Citrus Sinensis ID: 024295

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEccEEEEEEEEcccccccEEEEccEEEEcccccccccEEEEccccccccccEEEccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEccccccHHHHHHccccEEccccccccccHHHHHHHHHccccccEEEEccccHHHHHHHHHHcccccEEEEEEEccccccccccccHHHccccEEEEEEcccccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEEEccEEEEccccccccEcEEEEEHHHEEEccccccHHHHHHHHcHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHcccEEEcHHHccHHHHHEEEEEccccccccEEEEccccHHHHHHHHHHccccccEEEEcccccccccEEEccHHHHcccEEEEccHHHccHHHHHHHHHHHHHccccccHHHEEEEEEHHHHHHHHHHHHcccccEEEEEc
Coil and Loop (DISEMBL)
mtnlclkypialnglmldstsrmsvrgqKLYHIFScstwseymvidanyvvkvdpsidpsdasflscgfttgyGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIigidknpwkkekgkafgmtdfinpddepnkSISELVKGIThgmgvdycfectgvpslLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACggrtlkgttfggiktksdlptlldkcknkeFKLHQLLTHHVKLEEIDKAIQLlkqpdcvkvliti
Flexible Loop (DISEMBL)
MTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAkiigidknpwkkEKGKAFGMtdfinpddepnKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGgrtlkgttfggiktksdlpTLLDKCKNKEFKLHQLLTHHVKLEEIDKaiqllkqpdCVKVLITI
Low Complexity Region (SEG)
MTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKgssvavlglgtvglgavdgaRMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTkvgkgkvivigvgvDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI
Disordered region (IsUnstruct)
***LCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI*********ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI**
Disordered Region (DISOPRED)
MTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI
Disordered Region (DISEMBL)
MTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI
Disordered Region (DISPRO)
**NLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q9FH04	390	Alcohol dehydrogenase-lik	yes	no	0.985	0.679	0.425	1e-57
Q0V7W6	389	Alcohol dehydrogenase-lik	no	no	0.981	0.678	0.451	2e-56
Q9SK87	386	Alcohol dehydrogenase-lik	no	no	0.981	0.683	0.440	3e-56
Q9SK86	388	Alcohol dehydrogenase-lik	no	no	0.981	0.680	0.437	2e-54
Q8LEB2	381	Alcohol dehydrogenase-lik	no	no	0.973	0.687	0.416	1e-52
Q96533	379	Alcohol dehydrogenase cla	no	no	0.966	0.686	0.419	1e-51
A1L4Y2	394	Alcohol dehydrogenase-lik	no	no	0.985	0.672	0.407	4e-51
P80572	378	Alcohol dehydrogenase cla	N/A	no	0.973	0.693	0.408	4e-50
Q0DWH1	381	Alcohol dehydrogenase cla	no	no	0.966	0.682	0.408	6e-50
A2XAZ3	381	Alcohol dehydrogenase cla	N/A	no	0.966	0.682	0.408	6e-50

>sp|Q9FH04|ADHL7_ARATH Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1

 Score =  223 bits (569), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 115/270 (42%), Positives = 174/270 (64%), Gaps = 5/270 (1%)

Query: 2   TNLCLKYPIALNGLM--LDSTSRMS-VRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSID 58
           +NLC K+P  ++  M   D++SR + + G+ L+H  + S++SEY V+D   VVK+D SI 
Sbjct: 119 SNLCSKFPFKVSPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIP 178

Query: 59  PSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118
           PS A  LSCG +TG GAAW+ AKVEKGS+V + GLG++GL   +GAR+ GA++IIG+D N
Sbjct: 179 PSRACLLSCGVSTGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDIN 238

Query: 119 PWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTK 178
           P K + G+ FG+T+F+N        +SE++  +T G G DYCFEC G  SL+ EA    +
Sbjct: 239 PTKFQVGQKFGVTEFVNSMTCEKNRVSEVINEMTDG-GADYCFECVGSSSLVQEAYACCR 297

Query: 179 VGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKL 237
            G GK I +GV    + + L+   +   G+ L G+ FGG+K K+ +P LL +  + E +L
Sbjct: 298 QGWGKTITLGVDKPGSQICLDSFDVLHHGKILMGSLFGGLKAKTHIPILLKRYLSNELEL 357

Query: 238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
            + +TH +K EEI+ A QLL +  C++ ++
Sbjct: 358 DKFVTHEMKFEEINDAFQLLLEGKCIRCVL 387

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1

>sp|Q0V7W6|ADHL5_ARATH Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1

 Score =  219 bits (557), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/270 (45%), Positives = 166/270 (61%), Gaps = 6/270 (2%)

Query: 2   TNLCLKYP--IALNGLMLDSTSRM-SVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSID 58
           +N C ++      N      TSR     G+ +YH    S++SEY V+D  ++VK+ P I 
Sbjct: 118 SNWCARFADDFLSNTRRYGMTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIP 177

Query: 59  PSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118
              A+ LSCG +TG GAAWK A VEKGS+VAV GLG VGL   +GAR+ GA KIIG+D N
Sbjct: 178 VDKAALLSCGVSTGIGAAWKVANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLN 237

Query: 119 PWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTK 178
           P K E GK FG TDFIN        ISE++K +T G GVDY FEC G+PSLL+EA  +T+
Sbjct: 238 PEKFELGKKFGFTDFINSTLCGENKISEVIKEMTGG-GVDYSFECVGLPSLLTEAFSSTR 296

Query: 179 VGKGKVIVIGVGVDAMVPLNVIAL-ACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKL 237
            G GK +V+G+    + P+++ +     GR + G+ FGG+K K D+P L+D    KE  L
Sbjct: 297 TGSGKTVVLGID-KHLTPVSLGSFDLLRGRHVCGSLFGGLKPKLDIPILVDHYLKKELNL 355

Query: 238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
              +TH +K EEI+KA  LL Q   ++ ++
Sbjct: 356 DSFITHELKFEEINKAFDLLVQGKSLRCIL 385

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9SK87|ADHL2_ARATH Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1

 Score =  218 bits (556), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 119/270 (44%), Positives = 170/270 (62%), Gaps = 6/270 (2%)

Query: 2   TNLCLKYP--IALNGLMLDSTSRM-SVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSID 58
           +N C KY      N      TSR    RG+ ++H    S+++EY V+D  ++VK+ P I 
Sbjct: 115 SNWCTKYTNDYLSNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIP 174

Query: 59  PSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118
              A+ LSC   TG GAAWK A VE+GS+V + GLG VGL   +G R+ GAAKIIG+D N
Sbjct: 175 VDIAALLSCSVATGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLN 234

Query: 119 PWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTK 178
           P K E GK FG+TDF+NP     K+ISE+++ +T  +G DY FEC G+ SL+ EA ++T+
Sbjct: 235 PAKFEIGKRFGITDFVNPALCGEKTISEVIREMTD-VGADYSFECIGLASLMEEAFKSTR 293

Query: 179 VGKGKVIVIGVGVDAMVPLNVIAL-ACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKL 237
            G GK IV+G+   A+ P+++ +     GRT+ GT FGG+K K D+P L+D+   KE  L
Sbjct: 294 PGSGKTIVLGMEQKAL-PISLGSYDLLRGRTVCGTLFGGLKPKLDIPILVDRYLKKELNL 352

Query: 238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
             L+TH +  EEI+KA  LL + + ++ +I
Sbjct: 353 EDLITHELSFEEINKAFHLLAEGNSIRCII 382

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9SK86|ADHL1_ARATH Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1

 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 118/270 (43%), Positives = 167/270 (61%), Gaps = 6/270 (2%)

Query: 2   TNLCLKYP--IALNGLMLDSTSRM-SVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSID 58
           TN C +Y      N       SR     G+ ++H    S++SEY V+D  ++VK+ P I 
Sbjct: 117 TNWCDRYAEDFISNTRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIP 176

Query: 59  PSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118
              A+ LSCG +TG GAAWK A VE+GS++A+ GLG VGL   +GAR+ GAAKIIGID N
Sbjct: 177 VDKAALLSCGVSTGIGAAWKVANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTN 236

Query: 119 PWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTK 178
             K E GK FG TDFINP     K ISE++K +T G GVDY FEC G+ SLL+EA  +T+
Sbjct: 237 SDKFELGKKFGFTDFINPTLCGEKKISEVIKEMTEG-GVDYSFECVGLASLLNEAFISTR 295

Query: 179 VGKGKVIVIGVGVDAMVPLNVIAL-ACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKL 237
            G GK +++G+   A  P+++ +     GR + G+ FGG+K+K D+P L+D    KE  L
Sbjct: 296 TGTGKTVMLGMEKHA-APISLGSFDLLRGRVICGSLFGGLKSKLDIPILVDHYLKKELNL 354

Query: 238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
              +TH +  +EI+KA  LL++   ++ ++
Sbjct: 355 DSFITHELNFKEINKAFALLEEGKSLRCIL 384

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8LEB2|ADHL6_ARATH Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2

 Score =  206 bits (525), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 112/269 (41%), Positives = 164/269 (60%), Gaps = 7/269 (2%)

Query: 2   TNLCLKYPIALNGLM-LDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
           +N+C    +   GLM  D  +R S++G+ +YH  + S++SEY V+ +   VKVDP     
Sbjct: 113 SNMCQVLGMERKGLMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLH 172

Query: 61  DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW 120
               LSCG   G GAAW  A V+KGSSV + GLGTVGL    GA++ GAA+I+G+D NP 
Sbjct: 173 KICLLSCGVAAGLGAAWNVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPA 232

Query: 121 KKEKGKAFGMTDFINPDD--EPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTK 178
           K E+ K FG+TDFIN +D  EP   I +++K +T G G D+ FEC G   + + AL++  
Sbjct: 233 KAEQAKTFGVTDFINSNDLSEP---IPQVIKRMTGG-GADFSFECVGDTGIATTALQSCS 288

Query: 179 VGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLH 238
            G G  + +GV            L   G++LKGT FGG K KSDLP+L+DK  NKE  + 
Sbjct: 289 DGWGMTVTLGVPKAKPEVSAHYGLFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKEIMID 348

Query: 239 QLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
           + +TH++  +EI+KA  L+++  C++ ++
Sbjct: 349 EFITHNLSFDEINKAFVLMREGKCLRCVL 377

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q96533|ADHX_ARATH Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2

 Score =  203 bits (517), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 114/272 (41%), Positives = 162/272 (59%), Gaps = 12/272 (4%)

Query: 2   TNLCLKYPIALN-GLML-DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDP 59
           TNLC K   A   G+M+ D  SR SV G+ +YH    ST+S+Y V+    V K+DP+   
Sbjct: 110 TNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPL 169

Query: 60  SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP 119
                L CG  TG GA W  AKVE GS+VA+ GLGTVGL   +GA+  GA++IIGID + 
Sbjct: 170 DKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDS 229

Query: 120 WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKV 179
            K E  K FG+ +F+NP D  +K I E++  +T G GVDY FEC G  S++  ALE    
Sbjct: 230 KKYETAKKFGVNEFVNPKDH-DKPIQEVIVDLTDG-GVDYSFECIGNVSVMRAALECCHK 287

Query: 180 GKGKVIVIGVGVD----AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF 235
           G G  +++GV       +  P  ++     GR  KGT FGG K+++ +P L++K  NKE 
Sbjct: 288 GWGTSVIVGVAASGQEISTRPFQLVT----GRVWKGTAFGGFKSRTQVPWLVEKYMNKEI 343

Query: 236 KLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
           K+ + +TH++ L EI+KA  LL +  C++ ++
Sbjct: 344 KVDEYITHNLTLGEINKAFDLLHEGTCLRCVL 375

Plays a central role in formaldehyde detoxification.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|A1L4Y2|ADHL3_ARATH Alcohol dehydrogenase-like 3 OS=Arabidopsis thaliana GN=At1g32780 PE=2 SV=1

 Score =  201 bits (511), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 114/280 (40%), Positives = 166/280 (59%), Gaps = 15/280 (5%)

Query: 2   TNLCLKYPI-ALNGLML-DSTSRMSV---------RGQKLYHIFSCSTWSEYMVIDANYV 50
           +NLC +Y +  +  +M+ D  +R S          + Q +YH  + ST++EY V+D+  V
Sbjct: 112 SNLCERYHVDPMKRVMVNDGGTRFSTTINKDGGSSQSQPIYHFLNTSTFTEYTVLDSACV 171

Query: 51  VKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAA 110
           VK+DP+      S LSCG +TG GAAW  A V++G S AV GLG+VGL   +GAR  GA+
Sbjct: 172 VKIDPNSPLKQMSLLSCGVSTGVGAAWNIANVKEGKSTAVFGLGSVGLAVAEGARARGAS 231

Query: 111 KIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLL 170
           +IIG+D N  K EKGK  G+TDFINP D   K + ++++ IT G GVDY FECTG   +L
Sbjct: 232 RIIGVDANASKFEKGKLMGVTDFINPKDL-TKPVHQMIREITGG-GVDYSFECTGNVDVL 289

Query: 171 SEALETTKVGKGKVIVIGV-GVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDK 229
            EA  +T VG G  +++G+      +PL+ + L   GR + G+ FGG K KS LP    +
Sbjct: 290 REAFLSTHVGWGSTVLVGIYPTPRTLPLHPMELF-DGRRITGSVFGGFKPKSQLPNFAQQ 348

Query: 230 CKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
           C     KL   +T+ +  E+I+ A QLL+    ++ ++ I
Sbjct: 349 CMKGVVKLEPFITNELPFEKINDAFQLLRDGKSLRCILQI 388

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P80572|ADHX_PEA Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1

 Score =  198 bits (503), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 112/274 (40%), Positives = 159/274 (58%), Gaps = 12/274 (4%)

Query: 2   TNLCLKYPIA--LNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDP 59
           TNLC K   A  +  +M D  SR SV+G+ +YH    ST+S+Y V+    V K+ P    
Sbjct: 109 TNLCGKVRAATGVGVMMADRKSRFSVKGKPIYHFMGTSTFSQYTVVHDVSVAKIHPDAPL 168

Query: 60  SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP 119
                L CG  TG GA W  AKVE GS VA+ GLGTVGL   +GA+  GA++IIGID + 
Sbjct: 169 DKVCLLGCGVPTGLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDS 228

Query: 120 WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKV 179
            K +  K FG+T+FINP D   K I +++  +T G GVDY FEC G  S++  ALE    
Sbjct: 229 NKYDTAKNFGVTEFINPKDH-EKPIQQVIIDLTDG-GVDYSFECLGNVSVMRSALECCHK 286

Query: 180 GKGKVIVIGVGVD----AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF 235
           G G  +++GV       +  P  ++     GR  KGT FGG K++S +P L++K   KE 
Sbjct: 287 GWGTSVIVGVAASGQEISTRPFQLVT----GRVWKGTAFGGFKSRSQVPWLVEKYLKKEI 342

Query: 236 KLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
           K+ + +TH++ L EI+KA  LL +  C++ ++ +
Sbjct: 343 KVDEYITHNLTLLEINKAFDLLHEGQCLRCVLAV 376

Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|Q0DWH1|ADHX_ORYSJ Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1

 Score =  197 bits (502), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 111/272 (40%), Positives = 161/272 (59%), Gaps = 12/272 (4%)

Query: 2   TNLCLKYPIALN-GLML-DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDP 59
           TNLC K   A   G+M+ D  SR S+ G+ +YH    ST+S+Y V+    V K++P    
Sbjct: 112 TNLCGKVRAATGVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPL 171

Query: 60  SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP 119
                L CG +TG GA W  AKVE GS VA+ GLGTVGL   +GA+  GA++IIGID + 
Sbjct: 172 DKVCLLGCGVSTGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDS 231

Query: 120 WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKV 179
            K +  K FG+T+F+NP D  +K I +++  +T G GVDY FEC G  S++  ALE    
Sbjct: 232 KKFDVAKNFGVTEFVNPKDH-DKPIQQVIVDLTDG-GVDYSFECIGNVSVMRSALECCHK 289

Query: 180 GKGKVIVIGVGVD----AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF 235
           G G  +++GV       +  P  ++     GR  KGT FGG K++S +P L++K  NKE 
Sbjct: 290 GWGTSVIVGVAASGQEISTRPFQLVT----GRVWKGTAFGGFKSRSQVPWLVEKYLNKEI 345

Query: 236 KLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
           K+ + +TH + L +I+KA  LL +  C++ ++
Sbjct: 346 KVDEYVTHSMNLTDINKAFDLLHEGGCLRCVL 377

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|A2XAZ3|ADHX_ORYSI Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1

 Score =  197 bits (501), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 111/272 (40%), Positives = 161/272 (59%), Gaps = 12/272 (4%)

Query: 2   TNLCLKYPIALN-GLML-DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDP 59
           TNLC K   A   G+M+ D  SR S+ G+ +YH    ST+S+Y V+    V K++P    
Sbjct: 112 TNLCGKVRAATGVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPL 171

Query: 60  SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP 119
                L CG +TG GA W  AKVE GS VA+ GLGTVGL   +GA+  GA++IIGID + 
Sbjct: 172 DKVCLLGCGVSTGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDS 231

Query: 120 WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKV 179
            K +  K FG+T+F+NP D  +K I +++  +T G GVDY FEC G  S++  ALE    
Sbjct: 232 KKFDVAKNFGVTEFVNPKDH-DKPIQQVIVDLTDG-GVDYSFECIGNVSVMRSALECCHK 289

Query: 180 GKGKVIVIGVGVD----AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF 235
           G G  +++GV       +  P  ++     GR  KGT FGG K++S +P L++K  NKE 
Sbjct: 290 GWGTSVIVGVAASGQEISTRPFQLVT----GRVWKGTAFGGFKSRSQVPWLVEKYLNKEI 345

Query: 236 KLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
           K+ + +TH + L +I+KA  LL +  C++ ++
Sbjct: 346 KVDEYVTHSMNLTDINKAFDLLHEGGCLRCVL 377

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
224142703	377	predicted protein [Populus trichocarpa]	0.992	0.708	0.716	1e-107
225435026	392	PREDICTED: alcohol dehydrogenase-like 1-	0.988	0.678	0.671	1e-102
224144870	336	predicted protein [Populus trichocarpa]	0.988	0.791	0.675	1e-101
297746116	527	unnamed protein product [Vitis vinifera]	0.988	0.504	0.661	1e-100
224144873	378	predicted protein [Populus trichocarpa]	0.988	0.703	0.671	1e-100
147843919	402	hypothetical protein VITISV_023790 [Viti	0.970	0.649	0.659	1e-98
359478643	410	PREDICTED: LOW QUALITY PROTEIN: alcohol	0.988	0.648	0.667	2e-98
388507902	374	unknown [Lotus japonicus]	0.981	0.705	0.650	2e-97
359478647	411	PREDICTED: LOW QUALITY PROTEIN: alcohol	0.988	0.647	0.661	2e-97
367460047	375	alcohol dehydrogenase-like [Glycine max]	0.988	0.709	0.649	2e-97

>gi|224142703|ref|XP_002324694.1| predicted protein [Populus trichocarpa] gi|222866128|gb|EEF03259.1| predicted protein [Populus trichocarpa]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/268 (71%), Positives = 223/268 (83%), Gaps = 1/268 (0%)

Query: 2   TNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           TNLCLKYP+ LNGLM D TSRMS+ GQKLYH+ +CSTWSEYMVID NYVVK+DPSID   
Sbjct: 111 TNLCLKYPLILNGLMPDGTSRMSINGQKLYHLITCSTWSEYMVIDTNYVVKIDPSIDLPH 170

Query: 62  ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK 121
           ASFLSCGF+TG+G+AW+EA VEKGSSVAV+GLG VGLGA++GARM GAAKIIGIDKN  K
Sbjct: 171 ASFLSCGFSTGFGSAWREANVEKGSSVAVIGLGAVGLGAIEGARMQGAAKIIGIDKNEKK 230

Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK 181
           +EKG+AFGMTDFINPD+  NK ISEL+K IT G+GVDYCFECTGV  L++EAL  TK GK
Sbjct: 231 REKGQAFGMTDFINPDEYFNKPISELIKDITGGLGVDYCFECTGVGPLINEALLATKPGK 290

Query: 182 GKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLL 241
           G+  V+G G D  V +N + L CGG TLKG+ FGG+K KS LP LLDKCKNKEF L +LL
Sbjct: 291 GETFVVGAGTDLTVSINFLPLLCGG-TLKGSLFGGLKIKSHLPILLDKCKNKEFNLDELL 349

Query: 242 THHVKLEEIDKAIQLLKQPDCVKVLITI 269
           TH V L++I+KA QLL+QPDCVKVLI +
Sbjct: 350 THQVMLDDINKAFQLLEQPDCVKVLIKM 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435026|ref|XP_002281265.1| PREDICTED: alcohol dehydrogenase-like 1-like [Vitis vinifera]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/268 (67%), Positives = 224/268 (83%), Gaps = 2/268 (0%)

Query: 2   TNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           TN+CLK+P+   GLM D TSRMS+RGQ+L+HIFSCSTW+EYMV++ANY+VK+DP I PSD
Sbjct: 127 TNVCLKHPVTFTGLMPDGTSRMSIRGQRLHHIFSCSTWTEYMVVNANYLVKIDPRIAPSD 186

Query: 62  ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK 121
           ASFLSCGF+TGYGAAWK+AKVEKGSSVAVLGLG VGLG + GAR  GAA+IIGIDKN  +
Sbjct: 187 ASFLSCGFSTGYGAAWKDAKVEKGSSVAVLGLGAVGLGVLQGARNQGAARIIGIDKNERR 246

Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK 181
           +E G+AFGMTDFINP +E NKSISELV  +T G GVDY FECTG+PSL++EAL+ TKVGK
Sbjct: 247 REVGEAFGMTDFINP-NESNKSISELVNELTGGQGVDYSFECTGIPSLVNEALQATKVGK 305

Query: 182 GKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLL 241
           G  +V+G+     V ++++AL   G+TLKG  FGGIK +SD+P ++DKC NK+ +L +LL
Sbjct: 306 GMSMVLGIANVPTVDISLMALL-SGKTLKGCFFGGIKVQSDIPVIVDKCINKDIQLDELL 364

Query: 242 THHVKLEEIDKAIQLLKQPDCVKVLITI 269
           TH V+LE+++KA +LLKQPDCVKVLI I
Sbjct: 365 THEVQLEDMNKAFELLKQPDCVKVLIKI 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144870|ref|XP_002325445.1| predicted protein [Populus trichocarpa] gi|222862320|gb|EEE99826.1| predicted protein [Populus trichocarpa]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/268 (67%), Positives = 223/268 (83%), Gaps = 2/268 (0%)

Query: 2   TNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           TNLCL YP++ +GLMLD TSRMS++GQKLYH+F+CSTWSEYMVID+NYV K+DPSI    
Sbjct: 71  TNLCLTYPLSRSGLMLDGTSRMSIKGQKLYHMFTCSTWSEYMVIDSNYVNKIDPSIPLPH 130

Query: 62  ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK 121
           AS LSCGF+TG+GAAWKEA+V+ GS+VAVLGLG VGLG  +GARM GAAKIIG+DKN  K
Sbjct: 131 ASVLSCGFSTGFGAAWKEAQVKMGSTVAVLGLGAVGLGVTEGARMLGAAKIIGVDKNSMK 190

Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK 181
           K+KG AFGMTDFINPD+  +KSIS+++K +T GMGVDYCFEC G  SL+++A++ TK GK
Sbjct: 191 KDKGLAFGMTDFINPDECSDKSISQMIKDLTGGMGVDYCFECVGAESLINQAIQATKEGK 250

Query: 182 GKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLL 241
           GK IVIG G+++ V ++   L   GRTLKG+ FGG+K KSDLP L++KCKNKEF L +LL
Sbjct: 251 GKAIVIGGGINS-VKIDYAPLL-SGRTLKGSVFGGLKVKSDLPILMEKCKNKEFDLDELL 308

Query: 242 THHVKLEEIDKAIQLLKQPDCVKVLITI 269
           TH V L++I+KA +LLKQPDCVKVLI I
Sbjct: 309 THEVTLQDIEKAFELLKQPDCVKVLIKI 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746116|emb|CBI16172.3| unnamed protein product [Vitis vinifera]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/272 (66%), Positives = 224/272 (82%), Gaps = 6/272 (2%)

Query: 2   TNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           TN+CLK+P+   GLM D TSRMS+RGQ+L+HIFSCSTW+EYMV++ANY+VK+DP I PSD
Sbjct: 258 TNVCLKHPVTFTGLMPDGTSRMSIRGQRLHHIFSCSTWTEYMVVNANYLVKIDPRIAPSD 317

Query: 62  ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK 121
           ASFLSCGF+TGYGAAWK+AKVEKGSSVAVLGLG VGLG + GAR  GAA+IIGIDKN  +
Sbjct: 318 ASFLSCGFSTGYGAAWKDAKVEKGSSVAVLGLGAVGLGVLQGARNQGAARIIGIDKNERR 377

Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK 181
           +E G+AFGMTDFINP +E NKSISELV  +T G GVDY FECTG+PSL++EAL+ TKVGK
Sbjct: 378 REVGEAFGMTDFINP-NESNKSISELVNELTGGQGVDYSFECTGIPSLVNEALQATKVGK 436

Query: 182 GKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNK----EFKL 237
           G  +V+G+     V ++++AL   G+TLKG  FGGIK +SD+P ++DKC NK    + +L
Sbjct: 437 GMSMVLGIANVPTVDISLMALL-SGKTLKGCFFGGIKVQSDIPVIVDKCINKASSLDIQL 495

Query: 238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
            +LLTH V+LE+++KA +LLKQPDCVKVLI I
Sbjct: 496 DELLTHEVQLEDMNKAFELLKQPDCVKVLIKI 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144873|ref|XP_002325446.1| predicted protein [Populus trichocarpa] gi|222862321|gb|EEE99827.1| predicted protein [Populus trichocarpa]

 Score =  369 bits (948), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 180/268 (67%), Positives = 219/268 (81%), Gaps = 2/268 (0%)

Query: 2   TNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           TNLCL YP++ +GLMLD TSRMS+ GQKLYH+F+CSTWSEYMVID+NYV K+DPSI    
Sbjct: 113 TNLCLTYPLSRSGLMLDGTSRMSINGQKLYHMFTCSTWSEYMVIDSNYVNKIDPSIPLPH 172

Query: 62  ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK 121
           AS LSCGF+TG+GAAWKEA+V+ GS+VAVLGLG VGLG  +GARM GAAKIIG+DKN  K
Sbjct: 173 ASVLSCGFSTGFGAAWKEAQVKMGSTVAVLGLGAVGLGVTEGARMLGAAKIIGVDKNSMK 232

Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK 181
           K+KG AFGMTDFINPD+  +KSIS+++K +T GMGVDYCFEC G  SL+++A++ TK GK
Sbjct: 233 KDKGLAFGMTDFINPDECSDKSISQMIKDLTGGMGVDYCFECVGAESLINQAIQATKEGK 292

Query: 182 GKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLL 241
           GK IVIG G+ + V ++ + L   GRTLKG+ FGG+K KSDLP L  KCKNKEF L +LL
Sbjct: 293 GKTIVIGGGISS-VKIDYLPLL-SGRTLKGSLFGGLKVKSDLPILFQKCKNKEFDLDELL 350

Query: 242 THHVKLEEIDKAIQLLKQPDCVKVLITI 269
           TH V L++I+KA +LL QPDCVKVLI I
Sbjct: 351 THEVTLQDIEKAFELLNQPDCVKVLIKI 378

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843919|emb|CAN83716.1| hypothetical protein VITISV_023790 [Vitis vinifera]

 Score =  365 bits (937), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 176/267 (65%), Positives = 220/267 (82%), Gaps = 6/267 (2%)

Query: 2   TNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           TN+CLK+P+   GLM D TSRMS+RGQ+L+HIFSCSTW+EYMV++ANY+VK+DP I PSD
Sbjct: 97  TNVCLKHPVTFTGLMPDGTSRMSIRGQRLHHIFSCSTWTEYMVVNANYLVKIDPRIAPSD 156

Query: 62  ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK 121
           ASFLSCGF+TGYGAAWK+AKVEKGSSVAVLGLG VGLG + GAR  GAA+IIGIDKN  +
Sbjct: 157 ASFLSCGFSTGYGAAWKDAKVEKGSSVAVLGLGAVGLGVLQGARNQGAARIIGIDKNERR 216

Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK 181
           +E G+AFGMTDFINP +E NKSISELV  +T G GVDY FECTG+PSL++EAL+ TKVGK
Sbjct: 217 REVGEAFGMTDFINP-NESNKSISELVNELTGGQGVDYSFECTGIPSLVNEALQATKVGK 275

Query: 182 GKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNK----EFKL 237
           G  +V+G+     V ++++AL   G+TLKG  FGGIK +SD+P ++DKC NK    + +L
Sbjct: 276 GMSMVLGIANVPTVDISLMAL-LSGKTLKGCFFGGIKVQSDIPVIVDKCINKASSLDIQL 334

Query: 238 HQLLTHHVKLEEIDKAIQLLKQPDCVK 264
            +LLTH V+LE+++KA +LLKQPDCVK
Sbjct: 335 DELLTHEVQLEDMNKAFELLKQPDCVK 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478643|ref|XP_002281275.2| PREDICTED: LOW QUALITY PROTEIN: alcohol dehydrogenase-like 1-like [Vitis vinifera]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 179/268 (66%), Positives = 216/268 (80%), Gaps = 2/268 (0%)

Query: 2   TNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           TNLCL++P+ LNGLMLD TSRMS+RGQ+LYH+FSCSTW+ YMV++ANY+VK+D  I  S+
Sbjct: 145 TNLCLEHPLTLNGLMLDGTSRMSIRGQRLYHLFSCSTWAGYMVVNANYLVKIDSRIALSE 204

Query: 62  ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK 121
           ASFLSCGF+TGYGAAWKEAKVEKGSSVAVLGLG VGLG ++GAR  GAA+IIGIDKN  K
Sbjct: 205 ASFLSCGFSTGYGAAWKEAKVEKGSSVAVLGLGAVGLGVLEGARNQGAARIIGIDKNERK 264

Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK 181
           +E GK FGMTDFINP  + NK ISELV  +T   GVDY FEC G+ SL++E L+TTKVGK
Sbjct: 265 REMGKTFGMTDFINP-SKSNKPISELVHELTGXEGVDYSFECIGIQSLINEVLQTTKVGK 323

Query: 182 GKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLL 241
           G +IVIG G  A V +N + L   GRT+ G  FGGIK +SD+P L++KC NKE +L  LL
Sbjct: 324 GMLIVIGAGNKASVDINFLTLLL-GRTINGCIFGGIKVQSDIPLLVNKCINKEIQLDDLL 382

Query: 242 THHVKLEEIDKAIQLLKQPDCVKVLITI 269
           T+ ++LEEI KA +LLKQPDC+KVLI I
Sbjct: 383 TNEIQLEEIKKAYELLKQPDCIKVLIKI 410

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507902|gb|AFK42017.1| unknown [Lotus japonicus]

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 173/266 (65%), Positives = 213/266 (80%), Gaps = 2/266 (0%)

Query: 2   TNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           TNLCL YPI L GLM D+TSRMS+RGQ+L+H+ SC+TWSEYMV D NYV+KVDPSIDP+ 
Sbjct: 109 TNLCLTYPIRLTGLMPDNTSRMSIRGQRLHHVLSCATWSEYMVADVNYVLKVDPSIDPAH 168

Query: 62  ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK 121
           ASF+SCGF+TG+GAAWK+AKVE GSSVAV+GLG VGLGA+ GA+M GA KIIGIDKN  K
Sbjct: 169 ASFISCGFSTGFGAAWKQAKVESGSSVAVIGLGAVGLGAISGAKMLGATKIIGIDKNEMK 228

Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK 181
           +EKG+AFGMT FINP D   KS+SELVK ++ G  VDY FECTGVP LL+E+LE TKVG 
Sbjct: 229 REKGEAFGMTHFINPGDS-TKSVSELVKELSGGRSVDYSFECTGVPPLLTESLEATKVGT 287

Query: 182 GKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLL 241
           G+ I IGVG + +VP  + ++   GRTL+G+ FGG+KT SDL  + +KC+ +EF L +L 
Sbjct: 288 GETIAIGVGTEPIVPFGIGSILY-GRTLRGSVFGGLKTISDLSIIANKCQKEEFPLQELF 346

Query: 242 THHVKLEEIDKAIQLLKQPDCVKVLI 267
           TH V L +I KA +LLKQP+C KV+I
Sbjct: 347 THEVTLADIRKAFELLKQPNCAKVVI 372

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478647|ref|XP_003632151.1| PREDICTED: LOW QUALITY PROTEIN: alcohol dehydrogenase-like 1-like [Vitis vinifera]

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 178/269 (66%), Positives = 217/269 (80%), Gaps = 3/269 (1%)

Query: 2   TNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           TNLCL++P+ LNGLMLD TSRMS+RGQ+LYH+FSCSTW+EYMV++ANY+VK+D  I  S+
Sbjct: 145 TNLCLEHPLTLNGLMLDGTSRMSIRGQRLYHLFSCSTWAEYMVVNANYLVKIDSRIALSE 204

Query: 62  ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAV-DGARMHGAAKIIGIDKNPW 120
           ASFLSCGF+TGYGAAWK AKVEKGSSVAVLGLG VG G V +GAR  GAA+IIGIDKN  
Sbjct: 205 ASFLSCGFSTGYGAAWKAAKVEKGSSVAVLGLGAVGXGYVLEGARNQGAARIIGIDKNER 264

Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVG 180
           + E GK FGMTDFINP  + NK ISELV+ +T G GVDY FEC+G+ SL++E L+ TKVG
Sbjct: 265 RCEMGKNFGMTDFINP-SKSNKPISELVRELTRGEGVDYSFECSGIQSLINEVLQPTKVG 323

Query: 181 KGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQL 240
           KG +IVIG G +A + +N + L   GRT+KG  FGGIK +SD+P L++KC NKE +L  L
Sbjct: 324 KGMLIVIGAGNNASMDINFLTLLL-GRTIKGCIFGGIKVQSDIPLLVNKCINKEIQLDDL 382

Query: 241 LTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
           LTH ++LEEI K  +LLKQPDC+KVLI I
Sbjct: 383 LTHEIQLEEIKKVYELLKQPDCIKVLIKI 411

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|367460047|ref|NP_001238395.2| alcohol dehydrogenase-like [Glycine max]

 Score =  360 bits (925), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 174/268 (64%), Positives = 216/268 (80%), Gaps = 2/268 (0%)

Query: 2   TNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           TNLC+ YP+   GLM D+TSRMS+RG+++YHIFSC+TWSEYMV DANYV+KVDP+ID + 
Sbjct: 109 TNLCMTYPVRWTGLMPDNTSRMSIRGERIYHIFSCATWSEYMVSDANYVLKVDPTIDRAH 168

Query: 62  ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK 121
           ASF+SCGF+TG+GAAWKEAKVE GS+VAV GLG VGLGAV G++M GA++IIGID N  K
Sbjct: 169 ASFISCGFSTGFGAAWKEAKVESGSTVAVFGLGAVGLGAVIGSKMQGASRIIGIDTNENK 228

Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK 181
           + KG+AFG+TDFINP D  NKS SELVK ++ GMGVDY FECTGV +LLSE+LE TK+G 
Sbjct: 229 RAKGEAFGITDFINPGDS-NKSASELVKELSGGMGVDYSFECTGVSTLLSESLEATKIGT 287

Query: 182 GKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLL 241
           GK IVIGVG++  +PL + A+   GRTLKG+ FGG++  SDL  L DK   KEF L +L 
Sbjct: 288 GKAIVIGVGIEITLPLGLFAILL-GRTLKGSVFGGLRAISDLSILADKGHKKEFPLQELF 346

Query: 242 THHVKLEEIDKAIQLLKQPDCVKVLITI 269
           TH V L +I+KA +LLKQP+CVKV+I +
Sbjct: 347 THEVTLADINKAFELLKQPNCVKVVINM 374

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2157627	390	AT5G42250 [Arabidopsis thalian	0.985	0.679	0.366	1.3e-43
TAIR|locus:2009512	386	AT1G22440 [Arabidopsis thalian	0.981	0.683	0.381	3.5e-43
TAIR|locus:2120663	389	AT4G22110 [Arabidopsis thalian	0.981	0.678	0.385	9.3e-43
TAIR|locus:2009522	388	AT1G22430 [Arabidopsis thalian	0.981	0.680	0.381	8.4e-42
TAIR|locus:2184575	381	AT5G24760 [Arabidopsis thalian	0.981	0.692	0.348	7.5e-41
TAIR|locus:2035619	394	AT1G32780 [Arabidopsis thalian	0.985	0.672	0.353	3.4e-38
UNIPROTKB|J9P795	379	ADH4 "Uncharacterized protein"	0.981	0.696	0.335	2.1e-36
UNIPROTKB|F1S0Z0	391	ADH7 "Uncharacterized protein"	0.981	0.675	0.338	1.2e-35
UNIPROTKB|I3LFH9	374	ADH7 "Uncharacterized protein"	0.981	0.705	0.338	1.2e-35
MGI|MGI:1349472	377	Adh4 "alcohol dehydrogenase 4	0.977	0.697	0.332	2.4e-35

TAIR|locus:2157627 AT5G42250 [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 99/270 (36%), Positives = 151/270 (55%)

Query:     2 TNLCLKYPIALNGLM--LDSTSRMS-VRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSID 58
             +NLC K+P  ++  M   D++SR + + G+ L+H  + S++SEY V+D   VVK+D SI 
Sbjct:   119 SNLCSKFPFKVSPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIP 178

Query:    59 PSDASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKN 118
             PS A  LSCG +TG GAAW+ AKVEK                    R+ GA++IIG+D N
Sbjct:   179 PSRACLLSCGVSTGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDIN 238

Query:   119 PWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTX 178
             P K + G+ FG+T+F+N        +SE++  +T G G DYCFEC G  SL+ EA     
Sbjct:   239 PTKFQVGQKFGVTEFVNSMTCEKNRVSEVINEMTDG-GADYCFECVGSSSLVQEAYACCR 297

Query:   179 XXXXXXXXXXXXXD-AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKL 237
                            + + L+   +   G+ L G+ FGG+K K+ +P LL +  + E +L
Sbjct:   298 QGWGKTITLGVDKPGSQICLDSFDVLHHGKILMGSLFGGLKAKTHIPILLKRYLSNELEL 357

Query:   238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
              + +TH +K EEI+ A QLL +  C++ ++
Sbjct:   358 DKFVTHEMKFEEINDAFQLLLEGKCIRCVL 387

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2009512 AT1G22440 [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 103/270 (38%), Positives = 148/270 (54%)

Query:     2 TNLCLKYP--IALNGLMLDSTSRMS-VRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSID 58
             +N C KY      N      TSR    RG+ ++H    S+++EY V+D  ++VK+ P I 
Sbjct:   115 SNWCTKYTNDYLSNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIP 174

Query:    59 PSDASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKN 118
                A+ LSC   TG GAAWK A VE+                    R+ GAAKIIG+D N
Sbjct:   175 VDIAALLSCSVATGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLN 234

Query:   119 PWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTX 178
             P K E GK FG+TDF+NP     K+ISE+++ +T  +G DY FEC G+ SL+ EA ++T 
Sbjct:   235 PAKFEIGKRFGITDFVNPALCGEKTISEVIREMTD-VGADYSFECIGLASLMEEAFKSTR 293

Query:   179 XXXXXXXXXXXXXDAMVPLNVIAL-ACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKL 237
                           A+ P+++ +     GRT+ GT FGG+K K D+P L+D+   KE  L
Sbjct:   294 PGSGKTIVLGMEQKAL-PISLGSYDLLRGRTVCGTLFGGLKPKLDIPILVDRYLKKELNL 352

Query:   238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
               L+TH +  EEI+KA  LL + + ++ +I
Sbjct:   353 EDLITHELSFEEINKAFHLLAEGNSIRCII 382

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2120663 AT4G22110 [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 104/270 (38%), Positives = 142/270 (52%)

Query:     2 TNLCLKYP--IALNGLMLDSTSRMSVR-GQKLYHIFSCSTWSEYMVIDANYVVKVDPSID 58
             +N C ++      N      TSR     G+ +YH    S++SEY V+D  ++VK+ P I 
Sbjct:   118 SNWCARFADDFLSNTRRYGMTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIP 177

Query:    59 PSDASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKN 118
                A+ LSCG +TG GAAWK A VEK                    R+ GA KIIG+D N
Sbjct:   178 VDKAALLSCGVSTGIGAAWKVANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLN 237

Query:   119 PWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTX 178
             P K E GK FG TDFIN        ISE++K +T G GVDY FEC G+PSLL+EA  +T 
Sbjct:   238 PEKFELGKKFGFTDFINSTLCGENKISEVIKEMTGG-GVDYSFECVGLPSLLTEAFSSTR 296

Query:   179 XXXXXXXXXXXXXDAMVPLNVIAL-ACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKL 237
                            + P+++ +     GR + G+ FGG+K K D+P L+D    KE  L
Sbjct:   297 TGSGKTVVLGIDKH-LTPVSLGSFDLLRGRHVCGSLFGGLKPKLDIPILVDHYLKKELNL 355

Query:   238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
                +TH +K EEI+KA  LL Q   ++ ++
Sbjct:   356 DSFITHELKFEEINKAFDLLVQGKSLRCIL 385

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2009522 AT1G22430 [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 103/270 (38%), Positives = 143/270 (52%)

Query:     2 TNLCLKYP--IALNGLMLDSTSRMS-VRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSID 58
             TN C +Y      N       SR     G+ ++H    S++SEY V+D  ++VK+ P I 
Sbjct:   117 TNWCDRYAEDFISNTRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIP 176

Query:    59 PSDASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKN 118
                A+ LSCG +TG GAAWK A VE+                    R+ GAAKIIGID N
Sbjct:   177 VDKAALLSCGVSTGIGAAWKVANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTN 236

Query:   119 PWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTX 178
               K E GK FG TDFINP     K ISE++K +T G GVDY FEC G+ SLL+EA  +T 
Sbjct:   237 SDKFELGKKFGFTDFINPTLCGEKKISEVIKEMTEG-GVDYSFECVGLASLLNEAFISTR 295

Query:   179 XXXXXXXXXXXXXDAMVPLNVIAL-ACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKL 237
                           A  P+++ +     GR + G+ FGG+K+K D+P L+D    KE  L
Sbjct:   296 TGTGKTVMLGMEKHA-APISLGSFDLLRGRVICGSLFGGLKSKLDIPILVDHYLKKELNL 354

Query:   238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
                +TH +  +EI+KA  LL++   ++ ++
Sbjct:   355 DSFITHELNFKEINKAFALLEEGKSLRCIL 384

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2184575 AT5G24760 [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 93/267 (34%), Positives = 144/267 (53%)

Query:     2 TNLCLKYPIALNGLM-LDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
             +N+C    +   GLM  D  +R S++G+ +YH  + S++SEY V+ +   VKVDP     
Sbjct:   113 SNMCQVLGMERKGLMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLH 172

Query:    61 DASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPW 120
                 LSCG   G GAAW  A V+K                    ++ GAA+I+G+D NP 
Sbjct:   173 KICLLSCGVAAGLGAAWNVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPA 232

Query:   121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXX 180
             K E+ K FG+TDFIN +D  ++ I +++K +T G G D+ FEC G   + + AL++    
Sbjct:   233 KAEQAKTFGVTDFINSNDL-SEPIPQVIKRMTGG-GADFSFECVGDTGIATTALQSCSDG 290

Query:   181 XXXXXXXXXXXDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQL 240
                                  L   G++LKGT FGG K KSDLP+L+DK  NKE  + + 
Sbjct:   291 WGMTVTLGVPKAKPEVSAHYGLFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKEIMIDEF 350

Query:   241 LTHHVKLEEIDKAIQLLKQPDCVKVLI 267
             +TH++  +EI+KA  L+++  C++ ++
Sbjct:   351 ITHNLSFDEINKAFVLMREGKCLRCVL 377

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

TAIR|locus:2035619 AT1G32780 [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 99/280 (35%), Positives = 144/280 (51%)

Query:     2 TNLCLKYPI-ALNGLML-DSTSRMSV---------RGQKLYHIFSCSTWSEYMVIDANYV 50
             +NLC +Y +  +  +M+ D  +R S          + Q +YH  + ST++EY V+D+  V
Sbjct:   112 SNLCERYHVDPMKRVMVNDGGTRFSTTINKDGGSSQSQPIYHFLNTSTFTEYTVLDSACV 171

Query:    51 VKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAA 110
             VK+DP+      S LSCG +TG GAAW  A V++                    R  GA+
Sbjct:   172 VKIDPNSPLKQMSLLSCGVSTGVGAAWNIANVKEGKSTAVFGLGSVGLAVAEGARARGAS 231

Query:   111 KIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLL 170
             +IIG+D N  K EKGK  G+TDFINP D   K + ++++ IT G GVDY FECTG   +L
Sbjct:   232 RIIGVDANASKFEKGKLMGVTDFINPKDL-TKPVHQMIREITGG-GVDYSFECTGNVDVL 289

Query:   171 SEA-LETTXXXXXXXXXXXXXXDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDK 229
              EA L T                  +PL+ + L   GR + G+ FGG K KS LP    +
Sbjct:   290 REAFLSTHVGWGSTVLVGIYPTPRTLPLHPMELF-DGRRITGSVFGGFKPKSQLPNFAQQ 348

Query:   230 CKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
             C     KL   +T+ +  E+I+ A QLL+    ++ ++ I
Sbjct:   349 CMKGVVKLEPFITNELPFEKINDAFQLLRDGKSLRCILQI 388

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|J9P795 ADH4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 92/274 (33%), Positives = 146/274 (53%)

Query:     1 MTNLC-----LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDP 55
             +TNLC     +K PI    LM D TSR + +G+ +YH    ST+++Y V+    + K+D 
Sbjct:   109 LTNLCKKLSLVKNPIVDQELMEDKTSRFTCKGKPIYHFMGTSTFTQYTVVSDINLAKIDD 168

Query:    56 SIDPSDASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGI 115
              ++   A    CGF+TGYGAA   AKV                      ++ GA++II I
Sbjct:   169 DVNLERACLFGCGFSTGYGAAINTAKVTPGSTCAVFGLGGVGLSTIMGCKVAGASRIIAI 228

Query:   116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE 175
             D N  K  K KA G+T+ +NP D  NK I E++  +T+G GVD+ F+C G P  +  AL+
Sbjct:   229 DINNEKFTKAKALGITECLNPRDF-NKPIQEVIIEMTNG-GVDFAFDCAGGPEAMRAALD 286

Query:   176 TTXXXXXXXXXXXXXXD-AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKE 234
              T              + + + ++ + L  G RT+ GT FGG K+ S +P L+   KNK+
Sbjct:   287 CTTVGWGSCTLIGVNSEMSRLTISPVELIMG-RTINGTCFGGWKSDS-IPKLVTDYKNKK 344

Query:   235 FKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
             F L  L+TH +  ++I++A  ++ Q   +++++T
Sbjct:   345 FDLDLLVTHTLPFDKINEAFDIMNQGKSLRIVLT 378

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1S0Z0 ADH7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 90/266 (33%), Positives = 135/266 (50%)

Query:     3 NLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDA 62
             NLC++  I   G++ D T+R + +GQ +YH  + ST++EY V+D   V K+D +  P   
Sbjct:   127 NLCVRSDITGRGVLADGTTRFTCKGQPVYHFMNTSTYTEYTVVDETSVAKIDDAAPPEKV 186

Query:    63 SFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPWKK 122
               + CGF+TGYGAA K  KV                      ++ GA++IIGID N  K 
Sbjct:   187 CLIGCGFSTGYGAAVKTGKVTPGSTCVVFGLGRSGLSVIMGCKLAGASRIIGIDLNKDKF 246

Query:   123 EKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXX 182
             EK  A G T+ I+P D P K ISE++  +T G  V Y FE  G    + +AL +      
Sbjct:   247 EKAMAVGATECISPKDSP-KPISEVLSEMT-GDTVGYSFEVIGRLETMIDALASCNMNYG 304

Query:   183 XXXXXXXXXDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLT 242
                       A +      L   GRT KG  FGG K++ D+P L+     K+F L QL+T
Sbjct:   305 VSVVVGAPPSAKMLTYDPMLLFTGRTWKGCVFGGWKSRDDVPKLVTDFLAKKFDLDQLIT 364

Query:   243 HHVKLEEIDKAIQLLKQPDCVKVLIT 268
             H +  ++I++  +LL     ++ ++T
Sbjct:   365 HILPFKQINEGFELLYSGQSIRTVLT 390

GO:0048019 "receptor antagonist activity" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEA

GO:0042573 "retinoic acid metabolic process" evidence=IEA

GO:0042572 "retinol metabolic process" evidence=IEA

GO:0010430 "fatty acid omega-oxidation" evidence=IEA

GO:0009617 "response to bacterium" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0006068 "ethanol catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0004745 "retinol dehydrogenase activity" evidence=IEA

GO:0004031 "aldehyde oxidase activity" evidence=IEA

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|I3LFH9 ADH7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 90/266 (33%), Positives = 135/266 (50%)

Query:     3 NLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDA 62
             NLC++  I   G++ D T+R + +GQ +YH  + ST++EY V+D   V K+D +  P   
Sbjct:   110 NLCVRSDITGRGVLADGTTRFTCKGQPVYHFMNTSTYTEYTVVDETSVAKIDDAAPPEKV 169

Query:    63 SFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPWKK 122
               + CGF+TGYGAA K  KV                      ++ GA++IIGID N  K 
Sbjct:   170 CLIGCGFSTGYGAAVKTGKVTPGSTCVVFGLGRSGLSVIMGCKLAGASRIIGIDLNKDKF 229

Query:   123 EKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXX 182
             EK  A G T+ I+P D P K ISE++  +T G  V Y FE  G    + +AL +      
Sbjct:   230 EKAMAVGATECISPKDSP-KPISEVLSEMT-GDTVGYSFEVIGRLETMIDALASCNMNYG 287

Query:   183 XXXXXXXXXDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLT 242
                       A +      L   GRT KG  FGG K++ D+P L+     K+F L QL+T
Sbjct:   288 VSVVVGAPPSAKMLTYDPMLLFTGRTWKGCVFGGWKSRDDVPKLVTDFLAKKFDLDQLIT 347

Query:   243 HHVKLEEIDKAIQLLKQPDCVKVLIT 268
             H +  ++I++  +LL     ++ ++T
Sbjct:   348 HILPFKQINEGFELLYSGQSIRTVLT 373

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1349472 Adh4 "alcohol dehydrogenase 4 (class II), pi polypeptide" [Mus musculus (taxid:10090)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 91/274 (33%), Positives = 137/274 (50%)

Query:     1 MTNLC-----LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDP 55
             +TNLC      KYP     LM D TSR + +G+ +YH    S++S+Y V+    + +VD 
Sbjct:   108 LTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDD 167

Query:    56 SIDPSDASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGI 115
               +      + CGF++GYGAA   AKV                      ++ GA++II I
Sbjct:   168 EANLERVCLIGCGFSSGYGAAINTAKVTPSSTCAVFGLGCVGLSAIIGCKIAGASRIIAI 227

Query:   116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE 175
             D N  K  K KA G TD +NP  E +K + +++  +T G GVDY  +C G    L  A++
Sbjct:   228 DINGEKFPKAKALGATDCLNPR-ELDKPVQDVITELTAG-GVDYSLDCAGTAQTLKAAVD 285

Query:   176 TTXXXXXXXXXXXXXXDAM-VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKE 234
              T              D M +P   + L   GR++ GT FGG K+   +P L+   KNK+
Sbjct:   286 CTVLGWGSCTVVGAKVDKMTIPTVDVIL---GRSINGTFFGGWKSVDSVPNLVSDYKNKK 342

Query:   235 FKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
             F L  L+TH +  E I+ AI L+K+   ++ ++T
Sbjct:   343 FDLDLLVTHALPFESINDAIDLMKEGKSIRTILT 376

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001523 "retinoid metabolic process" evidence=ISO

GO:0003960 "NADPH:quinone reductase activity" evidence=IDA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISO;IDA

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISO;IDA

GO:0004032 "alditol:NADP+ 1-oxidoreductase activity" evidence=IDA

GO:0004745 "retinol dehydrogenase activity" evidence=ISO

GO:0005503 "all-trans retinal binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=ISO

GO:0006067 "ethanol metabolic process" evidence=IDA

GO:0006069 "ethanol oxidation" evidence=ISO

GO:0006081 "cellular aldehyde metabolic process" evidence=ISO;IDA

GO:0008270 "zinc ion binding" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016620 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor" evidence=ISO

GO:0019115 "benzaldehyde dehydrogenase activity" evidence=ISO

GO:0019841 "retinol binding" evidence=ISO

GO:0035276 "ethanol binding" evidence=ISO

GO:0042375 "quinone cofactor metabolic process" evidence=IDA

GO:0042572 "retinol metabolic process" evidence=ISO

GO:0046164 "alcohol catabolic process" evidence=IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-123
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	4e-98
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	2e-83
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	6e-79
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	7e-76
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	8e-73
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	9e-73
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	3e-72
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	4e-71
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	3e-66
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	3e-48
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	3e-47
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	5e-47
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	2e-43
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	1e-39
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	2e-35
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	1e-33
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	3e-33
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	3e-32
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	2e-31
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	2e-31
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	2e-29
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	7e-29
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	8e-29
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	1e-28
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	6e-28
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	8e-28
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	2e-27
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	7e-26
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	4e-25
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	4e-25
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	1e-24
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	1e-22
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	1e-20
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	2e-20
cd05281	341	cd05281, TDH, Threonine dehydrogenase	2e-20
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	2e-19
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	4e-19
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	5e-18
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	6e-18
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	8e-18
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	9e-18
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	7e-17
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	7e-16
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	6e-15
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	7e-15
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	8e-15
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	1e-14
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	4e-14
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	9e-14
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	1e-13
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	2e-13
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	2e-13
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	4e-13
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	6e-13
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	1e-12
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	4e-12
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	8e-12
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	2e-11
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	6e-11
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	6e-11
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	3e-10
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	3e-10
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	4e-09
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	9e-09
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	2e-08
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	6e-08
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	1e-07
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	7e-07
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	9e-07
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	1e-06
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	2e-06
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	2e-06
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	8e-06
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	6e-05
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	9e-05
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	1e-04
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	1e-04
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	3e-04
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	4e-04
smart00829	287	smart00829, PKS_ER, Enoylreductase	5e-04
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	8e-04
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	0.001
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	0.002
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	0.002
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	0.003
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	0.004

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score =  356 bits (915), Expect = e-123
 Identities = 136/267 (50%), Positives = 182/267 (68%), Gaps = 3/267 (1%)

Query: 2   TNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           TNLC KY    +GLM D TSR + +G+K+YH    ST+S+Y V+D NYV K+DP+     
Sbjct: 102 TNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEH 161

Query: 62  ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK 121
              L CGF+TGYGAAW  AKVE GS+VAV GLG VGL A+ GA++ GA++IIG+D N  K
Sbjct: 162 VCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDK 221

Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK 181
            EK K FG TDFINP D   K +SE+++ +T G GVDY FECTG   L++EALE+TK+G 
Sbjct: 222 FEKAKEFGATDFINPKDSD-KPVSEVIREMT-GGGVDYSFECTGNADLMNEALESTKLGW 279

Query: 182 GKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLL 241
           G  +V+GV   A + +    L   GRT KG+ FGG K++SD+P L+ K  NK+F L +L+
Sbjct: 280 GVSVVVGVPPGAELSIRPFQLIL-GRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELI 338

Query: 242 THHVKLEEIDKAIQLLKQPDCVKVLIT 268
           TH +  EEI+K   L+K  +C++ +IT
Sbjct: 339 THVLPFEEINKGFDLMKSGECIRTVIT 365

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score =  291 bits (747), Expect = 4e-98
 Identities = 117/270 (43%), Positives = 167/270 (61%), Gaps = 6/270 (2%)

Query: 2   TNLCLKYPI-ALNGLML-DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDP 59
           +N+C    I    G+M+ D  SR S+ G+ +YH    ST+SEY V+    V K++P    
Sbjct: 103 SNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPL 162

Query: 60  SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP 119
                LSCG +TG GAAW  AKV+KGS+VA+ GLG VGL   +GAR+ GA++IIG+D NP
Sbjct: 163 DKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNP 222

Query: 120 WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKV 179
            K E+ K FG+T+F+NP D  +K + E++  +T G GVDY FECTG    +  A E    
Sbjct: 223 SKFEQAKKFGVTEFVNPKDH-DKPVQEVIAEMTGG-GVDYSFECTGNIDAMISAFECVHD 280

Query: 180 GKGKVIVIGV-GVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLH 238
           G G  +++GV   DA+   + + L   GRTLKGT FGG K K+DLP L++K   KE +L 
Sbjct: 281 GWGVTVLLGVPHKDAVFSTHPMNL-LNGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELE 339

Query: 239 QLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
           + +TH +   EI+KA  LL + +C++ ++ 
Sbjct: 340 KFITHELPFSEINKAFDLLLKGECLRCILH 369

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score =  254 bits (650), Expect = 2e-83
 Identities = 112/272 (41%), Positives = 155/272 (56%), Gaps = 11/272 (4%)

Query: 2   TNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
           TNLC K       GLM D TSR S +G+ +YH    ST+SEY V+    V K++P     
Sbjct: 103 TNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAPLD 162

Query: 61  DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW 120
               L CG TTGYGA    AKVE GS+VAV GLG VGL  + GA+  GA++IIGID NP 
Sbjct: 163 KVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPD 222

Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVG 180
           K E  K FG TD +NP D   K I +++  +T G GVDY FEC G   ++  ALE    G
Sbjct: 223 KFELAKKFGATDCVNPKDHD-KPIQQVLVEMTDG-GVDYTFECIGNVKVMRAALEACHKG 280

Query: 181 KGKVIVIGV---GVD-AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFK 236
            G  ++IGV   G + +  P  ++     GR  KGT FGG K++S +P L++     + K
Sbjct: 281 WGTSVIIGVAAAGQEISTRPFQLVT----GRVWKGTAFGGWKSRSQVPKLVEDYMKGKIK 336

Query: 237 LHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
           + + +TH + L+EI++A  L+     ++ ++ 
Sbjct: 337 VDEFITHTMPLDEINEAFDLMHAGKSIRTVVK 368

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  242 bits (620), Expect = 6e-79
 Identities = 107/271 (39%), Positives = 149/271 (54%), Gaps = 7/271 (2%)

Query: 1   MTNLCLK-YPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDP 59
             NLC         G M D T+R+S  G  +YH   CST++EY V+    +VK+DP    
Sbjct: 101 KPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPL 160

Query: 60  SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP 119
             A  L CG TTG GA    AKVE G +VAV GLG VGL A+ GA+  GA +II +D NP
Sbjct: 161 EKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINP 220

Query: 120 WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKV 179
            K E  K FG T F+NP +  +  + E +  +T G G DY FEC G   ++ +ALE T  
Sbjct: 221 EKLELAKKFGATHFVNPKEVDD--VVEAIVELTDG-GADYAFECVGNVEVMRQALEATHR 277

Query: 180 GKGKVIVIGV-GVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLH 238
           G G  ++IGV G    +      L   GR  KG+ FGG + +SD+P L+D     +  L 
Sbjct: 278 G-GTSVIIGVAGAGQEISTRPFQLV-TGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPLD 335

Query: 239 QLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
           +L+TH + LE+I++A  L+ +   ++ +I  
Sbjct: 336 RLVTHTIPLEDINEAFDLMHEGKSIRSVIRF 366

Length = 366

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score =  235 bits (600), Expect = 7e-76
 Identities = 118/273 (43%), Positives = 166/273 (60%), Gaps = 8/273 (2%)

Query: 2   TNLCLKYPI-ALNGLML-DSTSRMSVR--GQKLYHIFSCSTWSEYMVIDANYVVKVDPSI 57
           TNLC  Y +     +M+ D  +R S +  GQ +YH  + ST++EY V+D+  VVK+DP+ 
Sbjct: 112 TNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNA 171

Query: 58  DPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDK 117
                S LSCG +TG GAAW  A V+ GSSVA+ GLG VGL   +GAR  GA+KIIG+D 
Sbjct: 172 PLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDI 231

Query: 118 NPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETT 177
           NP K EKGK  G+TDFINP D  +K + E ++ +T G GVDY FEC G   +L EA  +T
Sbjct: 232 NPEKFEKGKEMGITDFINPKDS-DKPVHERIREMTGG-GVDYSFECAGNVEVLREAFLST 289

Query: 178 KVGKGKVIVIGV-GVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFK 236
             G G  +++G+     M+PL+ + L   GR++ G+ FG  K KS LP L  +C      
Sbjct: 290 HDGWGLTVLLGIHPTPKMLPLHPMELF-DGRSITGSVFGDFKGKSQLPNLAKQCMQGVVN 348

Query: 237 LHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
           L   +TH +  E+I++A QLL+    ++ L+ +
Sbjct: 349 LDGFITHELPFEKINEAFQLLEDGKALRCLLHL 381

Length = 381

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score =  227 bits (580), Expect = 8e-73
 Identities = 114/267 (42%), Positives = 165/267 (61%), Gaps = 3/267 (1%)

Query: 2   TNLCLKYPIALNGLM-LDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
           +N+C    +   G+M  D  +R S++G+ +YH  + S++SEY V+ +   VKVDP     
Sbjct: 110 SNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLH 169

Query: 61  DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW 120
               LSCG   G GAAW  A V KGSSV + GLGTVGL    GA++ GA++IIG+D NP 
Sbjct: 170 KICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPE 229

Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVG 180
           K EK K FG+TDFINP+D  ++ I +++K +T G G DY FEC G   + + AL++   G
Sbjct: 230 KAEKAKTFGVTDFINPND-LSEPIQQVIKRMTGG-GADYSFECVGDTGIATTALQSCSDG 287

Query: 181 KGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQL 240
            G  + +GV            L   GRTLKG+ FGG K KSDLP+L+DK  NKE  + + 
Sbjct: 288 WGLTVTLGVPKAKPEVSAHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEF 347

Query: 241 LTHHVKLEEIDKAIQLLKQPDCVKVLI 267
           +TH++  +EI+KA +L+++  C++ +I
Sbjct: 348 ITHNLSFDEINKAFELMREGKCLRCVI 374

Length = 378

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score =  226 bits (579), Expect = 9e-73
 Identities = 105/269 (39%), Positives = 152/269 (56%), Gaps = 5/269 (1%)

Query: 2   TNLCLKYPIALN-GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
           +NLCLK  +    GLM D TSR + +G+ ++H    ST+SEY V+D   V K+D +    
Sbjct: 107 SNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLE 166

Query: 61  DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW 120
               + CGF+TGYGAA   AKV  GS+ AV GLG VGL A+ G +  GA++II +D N  
Sbjct: 167 KVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKD 226

Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVG 180
           K  K K  G T+ INP D   K I E++  +T G GVD+ FE  G    +  AL +   G
Sbjct: 227 KFAKAKELGATECINPQDY-KKPIQEVLTEMTDG-GVDFSFEVIGRLDTMKAALASCHEG 284

Query: 181 KGKVIVIGVGVDA-MVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQ 239
            G  +++GV   +  + +N + L   GRT KG  FGG K+K  +P L+     K+F L  
Sbjct: 285 YGVSVIVGVPPSSQNLSINPMLLLT-GRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDP 343

Query: 240 LLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
           L+TH +  E+I++   LL+    ++ ++T
Sbjct: 344 LITHTLPFEKINEGFDLLRSGKSIRTVLT 372

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  225 bits (575), Expect = 3e-72
 Identities = 92/269 (34%), Positives = 140/269 (52%), Gaps = 5/269 (1%)

Query: 1   MTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
             NLC      L G + D T R +  G+ +  +    T++EY V+    VVK+D  I   
Sbjct: 99  QPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLD 158

Query: 61  DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW 120
            A+ L CG TTG GA    A+V  G +VAV+G G VGL A+ GAR+ GA++II +D  P 
Sbjct: 159 RAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPE 218

Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVG 180
           K E  + FG T  +N  ++      E V+ +T G G DY FE  G  + + +AL  T+ G
Sbjct: 219 KLELARRFGATHTVNASED---DAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG 275

Query: 181 KGKVIVIGVG-VDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQ 239
            G  +V+G+G     V L  + L    + L+G+ +G    + D+P LLD  +    KL +
Sbjct: 276 -GTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDE 334

Query: 240 LLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
           L+T    L+EI++A   +   +  + +I 
Sbjct: 335 LVTRRYSLDEINEAFADMLAGENARGVIV 363

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score =  222 bits (567), Expect = 4e-71
 Identities = 107/269 (39%), Positives = 154/269 (57%), Gaps = 5/269 (1%)

Query: 2   TNLCLKY-PIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
            NLC K       GLM D TSR + +G+ ++H    ST++EY V+    + K+DP     
Sbjct: 100 PNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLE 159

Query: 61  DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW 120
               + CGF+TGYGAA   AKV  GS+ AV GLG VGL  + G +  GA++II +D N  
Sbjct: 160 KVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKD 219

Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVG 180
           K EK K  G T+ INP D  +K I E++  +T G GVDY FE  G    L +AL+ T++G
Sbjct: 220 KFEKAKQLGATECINPRD-QDKPIVEVLTEMTDG-GVDYAFEVIGSADTLKQALDATRLG 277

Query: 181 KGKVIVIGVGVDA-MVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQ 239
            G  +V+GV        L+   L   GRT+KGT FGG K+K  +P L+   + K+F L +
Sbjct: 278 GGTSVVVGVPPSGTEATLDPNDLL-TGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDE 336

Query: 240 LLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
           L+TH +  EEI+    L++  + ++ ++T
Sbjct: 337 LITHVLPFEEINDGFDLMRSGESIRTILT 365

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score =  210 bits (535), Expect = 3e-66
 Identities = 110/269 (40%), Positives = 156/269 (57%), Gaps = 5/269 (1%)

Query: 2   TNLCLKY-PIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
           TNLC+        GLM D TSR S  GQ +YH   CST+SEY V+    + K++P+    
Sbjct: 102 TNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLE 161

Query: 61  DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW 120
           +   L CG TTG GA    AKVE+G +VAV GLG +GL  + GARM  A++II ID NP 
Sbjct: 162 EVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPA 221

Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVG 180
           K E  K  G TD +NP+D  +K I E++  IT G GVDY FEC G  +++  ALE    G
Sbjct: 222 KFELAKKLGATDCVNPNDY-DKPIQEVIVEITDG-GVDYSFECIGNVNVMRAALECCHKG 279

Query: 181 KGKVIVIGV-GVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQ 239
            G+ I+IGV G    +      L   GR  +G+ FGG+K +++LP ++++    E  L  
Sbjct: 280 WGESIIIGVAGAGQEISTRPFQLVT-GRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDD 338

Query: 240 LLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
            +TH + LE+I++A  L+ +   ++ +I 
Sbjct: 339 FVTHTMPLEDINEAFDLMHEGKSIRTVIH 367

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score =  163 bits (415), Expect = 3e-48
 Identities = 89/260 (34%), Positives = 135/260 (51%), Gaps = 10/260 (3%)

Query: 1   MTNLCLKYPIALNGLML-DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDP 59
           + NLC      L G  + D T R    GQ +  +    T+SEY V+    VVK+D  I  
Sbjct: 101 LQNLCDLGAALLTGSQISDGTYRFHADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPL 160

Query: 60  SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP 119
             A  + CG  TG+G+A   A V  G +V V+G+G VG+ AV GA + GA K+I +D   
Sbjct: 161 DKACLVGCGVPTGWGSAVNIADVRPGDTVVVMGIGGVGINAVQGAAVAGARKVIAVDPVE 220

Query: 120 WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV--PSLLSEALETT 177
           +K+E+   FG T      +E  + + EL    T+G G D      G      ++EAL  T
Sbjct: 221 FKREQALKFGATHAFASMEEAVQLVREL----TNGQGADKTIITVGEVDGEHIAEALSAT 276

Query: 178 KVGKGKVIVIGVG--VDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF 235
           + G G+V+V G+G   D  V +N+  L    + L+GT FGG   ++D+P LL+  +  + 
Sbjct: 277 RKG-GRVVVTGLGPMADVDVKVNLFELTLLQKELQGTLFGGANPRADIPRLLELYRAGKL 335

Query: 236 KLHQLLTHHVKLEEIDKAIQ 255
           KL +L+T    L++I++  Q
Sbjct: 336 KLDELITRTYTLDQINEGYQ 355

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  160 bits (408), Expect = 3e-47
 Identities = 83/268 (30%), Positives = 133/268 (49%), Gaps = 11/268 (4%)

Query: 5   CLKY-PIALNGLMLDSTSRMSVRGQK--LYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           C  + P+  +G   D ++ +S+        H F  S+++ Y V+    VVKVD  +    
Sbjct: 104 CENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLEL 163

Query: 62  ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK 121
            + L CG  TG GA     K   GSS+AV G G VGL AV  A++ G   II +D    +
Sbjct: 164 LAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSR 223

Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK 181
            E  K  G T  INP +E    +   ++ IT G GVDY  + TGVP+++ +A++      
Sbjct: 224 LELAKELGATHVINPKEE---DLVAAIREITGG-GVDYALDTTGVPAVIEQAVDALAPR- 278

Query: 182 GKVIVIGVG-VDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQL 240
           G + ++G     A V L+V  L   G+T++G   G    +  +P L++  +  +F   +L
Sbjct: 279 GTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKL 338

Query: 241 LTHHVKLEEIDKAIQLLKQPDCVK-VLI 267
           +T +   E+I++AI   +    +K VL 
Sbjct: 339 VTFY-PFEDINQAIADSESGKVIKPVLR 365

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score =  160 bits (406), Expect = 5e-47
 Identities = 84/256 (32%), Positives = 128/256 (50%), Gaps = 6/256 (2%)

Query: 13  NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTG 72
            G +L    R+ +RG ++ H    S ++EY V+    VVK+D  +    A+   C   TG
Sbjct: 120 AGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTG 179

Query: 73  YGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD 132
            GA    A V  G SVAV+GLG VGL A+ GA   GA++++ +D N  K    +  G T 
Sbjct: 180 VGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA 239

Query: 133 FINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GV 191
            +N  D    +  E V+ +T G GVDY FE  G    L  A E T+ G G  +  G+   
Sbjct: 240 TVNAGDP---NAVEQVRELTGG-GVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDP 294

Query: 192 DAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEID 251
           +A + +  ++L    RTLKG+  G    + D+P  L    +    + +LLTH + L+EI+
Sbjct: 295 EARLSVPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEIN 354

Query: 252 KAIQLLKQPDCVKVLI 267
           +    L   + V+ +I
Sbjct: 355 EGFDRLAAGEAVRQVI 370

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  150 bits (382), Expect = 2e-43
 Identities = 79/261 (30%), Positives = 125/261 (47%), Gaps = 11/261 (4%)

Query: 3   NLC---LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDP 59
           NLC     Y      L  D T+R+        +++S    +EY V+ A  +  +  S+D 
Sbjct: 104 NLCEDFFAYNRLKGTL-YDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPLPESLDY 162

Query: 60  SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP 119
           ++++ L C   T YGA    A V  G +VAV+G+G VG  A+  A+  GA+ II +D   
Sbjct: 163 TESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRD 222

Query: 120 WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKV 179
            K  K K  G T  +N   E        ++ IT G GVD   E  G P     AL+  + 
Sbjct: 223 EKLAKAKELGATHTVNAAKE---DAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRD 279

Query: 180 GKGKVIVIGVG-VDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLH 238
           G G+ +V+G+    A   + +  L   G  + G ++G  + + DLP L+    + +    
Sbjct: 280 G-GRAVVVGLAPGGATAEIPITRLVRRGIKIIG-SYGA-RPRQDLPELVGLAASGKLDPE 336

Query: 239 QLLTHHVKLEEIDKAIQLLKQ 259
            L+TH  KLEEI++A + L++
Sbjct: 337 ALVTHKYKLEEINEAYENLRK 357

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score =  140 bits (355), Expect = 1e-39
 Identities = 62/234 (26%), Positives = 113/234 (48%), Gaps = 7/234 (2%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVG 97
            ++EY+ + A++ +   P     +A+ L+    T Y    + A V  G +V V+G G +G
Sbjct: 122 GFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIG 181

Query: 98  LGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGV 157
           L A+  A++ GA+ +I +D++P + E  K  G  D +    E +      +  +T G G 
Sbjct: 182 LLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDD--AGAEILELTGGRGA 239

Query: 158 DYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI 217
           D   E  G P  L +ALE  + G G V+V+GV     +PL    +     TL+G+     
Sbjct: 240 DVVIEAVGSPPALDQALEALRPG-GTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPS- 297

Query: 218 KTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLL--KQPDCVKVLITI 269
             + D    LD   + +    +L+TH + L++  +A +L   ++ + +KV++  
Sbjct: 298 -GREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVLKP 350

Length = 350

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  127 bits (321), Expect = 2e-35
 Identities = 54/191 (28%), Positives = 89/191 (46%), Gaps = 9/191 (4%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVG 97
            ++EY+V+ A+ +V +   +   +A+ L     T Y A  +   ++ G +V VLG G VG
Sbjct: 88  GFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVG 147

Query: 98  LGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGV 157
           L A   A+  G A++I  D++  K E  K  G    I+  +E      E    +T G G 
Sbjct: 148 LLAAQLAKAAG-ARVIVTDRSDEKLELAKELGADHVIDYKEED----LEEELRLTGGGGA 202

Query: 158 DYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI 217
           D   +  G P  L++AL   + G G+++V+G         ++  L     T+ G+T G  
Sbjct: 203 DVVIDAVGGPETLAQALRLLRPG-GRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGG-- 259

Query: 218 KTKSDLPTLLD 228
            T+ D    LD
Sbjct: 260 -TREDFEEALD 269

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score =  124 bits (313), Expect = 1e-33
 Identities = 76/234 (32%), Positives = 116/234 (49%), Gaps = 12/234 (5%)

Query: 40  SEYM-VIDANY-VVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVG 97
           +EY+ V  A+  + K+   +   DA  LS    TG+  A + A ++ GS+VAV+G G VG
Sbjct: 122 AEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVG 180

Query: 98  LGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGV 157
           L AV GAR+ GAA+II +D NP + +  K  G TD INP +     I E +  +T G GV
Sbjct: 181 LCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGD---IVEQILELTGGRGV 237

Query: 158 DYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI 217
           D   E  G      +A++  + G G +  +GV         +        T K    G +
Sbjct: 238 DCVIEAVGFEETFEQAVKVVRPG-GTIANVGVYGKPDPLPLLGEWFGKNLTFKT---GLV 293

Query: 218 KTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ--PDCVKVLITI 269
             ++ +P LLD  +  +    +L+TH   L++I KA +L       C+KV+I  
Sbjct: 294 PVRARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP 347

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score =  123 bits (311), Expect = 3e-33
 Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 6/234 (2%)

Query: 38  TWSEYMVIDAN-YVVKVDPSIDPSDASFLSCGFTTGYGAAWKEA-KVEKGSSVAVLGLGT 95
            ++E++ +     +V+V  ++    A+  +C   T   AA   A  V  G +V V G G 
Sbjct: 130 GYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALATVL-AALDRAGPVGAGDTVVVQGAGP 188

Query: 96  VGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGM 155
           +GL AV  A++ GA ++I ID +P + E  + FG    I+ D+ P+     +V+ IT G 
Sbjct: 189 LGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGR 248

Query: 156 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDA-MVPLNVIALACGGRTLKGTTF 214
           G D   E +G P+ + E LE  + G G  +++G    A  VPL+   +     T+ G   
Sbjct: 249 GADVVIEASGHPAAVPEGLELLRRG-GTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVHN 307

Query: 215 GGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
                       L++ +   F   +L+TH   LE+I++A++L +    +KV+I 
Sbjct: 308 YDPSHLYRAVRFLERTQ-DRFPFAELVTHRYPLEDINEALELAESGTALKVVID 360

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score =  121 bits (306), Expect = 3e-32
 Identities = 68/241 (28%), Positives = 114/241 (47%), Gaps = 30/241 (12%)

Query: 51  VKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAA 110
            K+   +    A FLS    TGY AA + A+V+ G +VAV G G VGL A   A++ GA 
Sbjct: 152 FKIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAE 210

Query: 111 KIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV---- 166
           ++I ID+ P + E  ++    + IN ++  +  + E ++ +T G G D C +  G+    
Sbjct: 211 RVIAIDRVPERLEMARSHLGAETINFEEVDD--VVEALRELTGGRGPDVCIDAVGMEAHG 268

Query: 167 -----------------PSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTL 209
                            P  L EA++  + G G V +IGV    +    + A    G TL
Sbjct: 269 SPLHKAEQALLKLETDRPDALREAIQAVRKG-GTVSIIGVYGGTVNKFPIGAAMNKGLTL 327

Query: 210 KGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLL--KQPDCVKVLI 267
           +    G    +  LP LL+  ++ E     ++TH + LE+  +A ++   K+  C+KV++
Sbjct: 328 RM---GQTHVQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVL 384

Query: 268 T 268
            
Sbjct: 385 K 385

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score =  119 bits (299), Expect = 2e-31
 Identities = 74/250 (29%), Positives = 123/250 (49%), Gaps = 8/250 (3%)

Query: 18  DSTSRMSVR-GQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAA 76
           ++T +M++  G +L        ++E  ++ A    KVDP+ DP+ A  L CG   G GAA
Sbjct: 109 NATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAA 168

Query: 77  WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINP 136
                V++G SVAV+G G VG  A+ GA + GA+KII +D +  K E  + FG T  +N 
Sbjct: 169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNS 228

Query: 137 -DDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAM- 194
              +P ++I  L    T G G D   +  G P    +A     +  G V+++GV    M 
Sbjct: 229 SGTDPVEAIRAL----TGGFGADVVIDAVGRPETYKQAFYARDLA-GTVVLVGVPTPDMT 283

Query: 195 VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAI 254
           + L ++ +   G  LK + +G    + D P L+D        L   +T  + L+++++A 
Sbjct: 284 LELPLLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAF 343

Query: 255 QLLKQPDCVK 264
             +   D ++
Sbjct: 344 DKMHAGDVLR 353

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score =  118 bits (299), Expect = 2e-31
 Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 19/242 (7%)

Query: 38  TWSEYMVI---DANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLG 94
            ++EY  +   DAN +  +   +    A  L    +TG+  A + A ++ G +VAV G+G
Sbjct: 119 VFAEYFHVNDADAN-LAPLPDGLTDEQAVMLPDMMSTGFHGA-ELANIKLGDTVAVFGIG 176

Query: 95  TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHG 154
            VGL AV GAR+ GA +II +   P + E  K +G TD ++     N  + E +  +T G
Sbjct: 177 PVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYK---NGDVVEQILKLTGG 233

Query: 155 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDAMVPLNVIALACG--GRTLKG 211
            GVD      G      +AL+  K G G +  +   G D  +P+       G   +T+ G
Sbjct: 234 KGVDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYGEDDYLPIPREEWGVGMGHKTING 292

Query: 212 T-TFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHV-KLEEIDKAIQLL--KQPDCVKVLI 267
               GG   +  +  L    +       +LLTHH    ++I++A+ L+  K  D +K +I
Sbjct: 293 GLCPGG---RLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVI 349

Query: 268 TI 269
             
Sbjct: 350 IF 351

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  113 bits (285), Expect = 2e-29
 Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 18/223 (8%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVG 97
            ++EY+V+ A YVVK+   +D ++A+ L C   T Y A  K+A V+ G  VAV+G G +G
Sbjct: 121 GYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLG 179

Query: 98  LGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGV 157
             AV  A+  G A++I I ++  K E  K  G    IN  D       E VK I      
Sbjct: 180 HMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDS---DALEAVKEI-----A 230

Query: 158 DYCFECTGVPSLLSEALETTKVGKGKVIVIG-VGVDAMVPLNVIALACGGRTLKGTTFGG 216
           D   +  G P+ L  +L+  + G G ++++G  G   +  L    L     ++ G+  G 
Sbjct: 231 DAIIDTVG-PATLEPSLKALRRG-GTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGT 288

Query: 217 IKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 259
                DL   LD     + K    +   + L+EI++A + +++
Sbjct: 289 RA---DLEEALDFAAEGKIKPE--ILETIPLDEINEAYERMEK 326

Length = 339

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  111 bits (280), Expect = 7e-29
 Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 13/221 (5%)

Query: 39  WSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGL 98
           ++EY+V+ A  +V V   +  + A+  +    T Y A  +  +V+ G +V V+GLG +GL
Sbjct: 120 FAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGL 179

Query: 99  GAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVD 158
            AV  A+  G A +I +D    K E  K  G  + +N  D+  K       G     G D
Sbjct: 180 NAVQIAKAMG-AAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGG----GFD 234

Query: 159 YCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIK 218
             F+  G      +A +  K G G+++V+G+G D  + +++  L      + G +FGG  
Sbjct: 235 VIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGRDK-LTVDLSDLIARELRIIG-SFGG-- 289

Query: 219 TKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 259
           T  DLP +LD       KL         L+EI + ++ L +
Sbjct: 290 TPEDLPEVLDLIAKG--KL-DPQVETRPLDEIPEVLERLHK 327

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score =  111 bits (280), Expect = 8e-29
 Identities = 66/229 (28%), Positives = 109/229 (47%), Gaps = 12/229 (5%)

Query: 41  EYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGA 100
           EYM++    ++ +   +  +D + L CG  T Y A  +   V    +V V+G G VGLGA
Sbjct: 121 EYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGA 179

Query: 101 VDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC 160
           +  AR  GA  +IG+D +P + E  KA G    IN   +  + I EL    T G G D  
Sbjct: 180 LMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIREL----TSGAGADVA 235

Query: 161 FECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVI-ALACGGRTLKGTTFGGIKT 219
            EC+G  +    ALE  +   G+++++G G    + + V   L    RTL G+ +  +  
Sbjct: 236 IECSGNTAARRLALEAVRP-WGRLVLVGEG--GELTIEVSNDLIRKQRTLIGSWYFSVPD 292

Query: 220 KSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
             +    L +    + ++ +L+TH   L++  +A  L  Q +  KV+  
Sbjct: 293 MEECAEFLAR---HKLEVDRLVTHRFGLDQAPEAYALFAQGESGKVVFV 338

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score =  105 bits (264), Expect = 1e-28
 Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 5/134 (3%)

Query: 96  VGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGM 155
           VGL AV  A+  GAA++I +D++  K E  K  G    IN  DE      E V+ +T G 
Sbjct: 2   VGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRDE---DFVERVRELTGGR 58

Query: 156 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFG 215
           GVD   +C G P+ L +ALE  + G G+V+V+G+   A VP  +  L     T+ G+  G
Sbjct: 59  GVDVVIDCVGAPATLEQALELLRPG-GRVVVVGLPGGAPVPFPLRDLLLKELTILGSLGG 117

Query: 216 GIKT-KSDLPTLLD 228
           G +  +  L  L  
Sbjct: 118 GREEFEEALELLAS 131

Length = 131

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  109 bits (274), Expect = 6e-28
 Identities = 60/238 (25%), Positives = 110/238 (46%), Gaps = 21/238 (8%)

Query: 40  SEYMVIDANYVV-----KVDPSIDPSDASF---LSCGFTTGYGAAWKEAKVEKGSSVAVL 91
           +EY+ + A  V      K+  ++   +A+    L+C        A ++A ++ G +V V+
Sbjct: 118 AEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLACCI-----NAQRKAGIKPGDTVLVI 172

Query: 92  GLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGI 151
           G G +GL     A+  GA K+I  D N ++ E  K  G    I+  +E    + E V+ +
Sbjct: 173 GAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEE---DLVEKVREL 229

Query: 152 THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDAMVPLNVIALACGGRTLK 210
           T G G D     TG P   ++ALE  + G G+++  G     + V ++   +     T+ 
Sbjct: 230 TDGRGADVVIVATGSPEAQAQALELVRKG-GRILFFGGLPKGSTVNIDPNLIHYREITIT 288

Query: 211 GTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
           G+      +  D    L+   + +  +  L+TH   LE+I++A +L      +K++IT
Sbjct: 289 GSYAA---SPEDYKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGKSLKIVIT 343

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score =  108 bits (273), Expect = 8e-28
 Identities = 60/235 (25%), Positives = 105/235 (44%), Gaps = 16/235 (6%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASF---LSCGFTTGYGAAWKEAKVEKGSSVAVLGLG 94
           T   Y+   A++  K+  ++   + +    LS G       A + A V  G +V V G G
Sbjct: 118 TLCRYVNHPADFCHKLPDNVSLEEGALVEPLSVGV-----HACRRAGVRPGDTVLVFGAG 172

Query: 95  TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHG 154
            +GL     A+  GA K++  D +P + E  K  G T  +N   E     +E +  +  G
Sbjct: 173 PIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAELLGG 232

Query: 155 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTF 214
            G D   ECTG  S +  A+  T+ G G V+++G+G    V L + A +     ++G   
Sbjct: 233 KGPDVVIECTGAESCIQTAIYATRPG-GTVVLVGMGKP-EVTLPLSAASLREIDIRGV-- 288

Query: 215 GGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP--DCVKVLI 267
              +  +  PT ++   + +  +  L+TH   LE+  +A +   +     +KV+I
Sbjct: 289 --FRYANTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVI 341

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score =  108 bits (271), Expect = 2e-27
 Identities = 56/236 (23%), Positives = 112/236 (47%), Gaps = 21/236 (8%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASF---LSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTV 96
           +EY+V+ A +V K+  ++   +A+    L+  +      A + +  + G +  VLG G +
Sbjct: 130 AEYVVVPAYHVHKLPDNVPLEEAALVEPLAVAWH-----AVRRSGFKPGDTALVLGAGPI 184

Query: 97  GLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG 156
           GL  +   +  GA+KII  + +  ++E  +  G T  ++P +     +   V+ +T G G
Sbjct: 185 GLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEV---DVVAEVRKLTGGGG 241

Query: 157 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDAMVPLNVIALACGGRTLKGTTFG 215
           VD  F+C GV + L  A++  +   G  + + +         N + L    +TL G+   
Sbjct: 242 VDVSFDCAGVQATLDTAIDALRPR-GTAVNVAIWEKPISFNPNDLVL--KEKTLTGSI-- 296

Query: 216 GIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEI-DKAIQ-LLKQPD-CVKVLIT 268
              T+ D   ++D   + +     L+T  + LE+I +K  + L+   +  VK+L++
Sbjct: 297 -CYTREDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILVS 351

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =  103 bits (260), Expect = 7e-26
 Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 25/240 (10%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASF---LSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTV 96
           +EY+ + A  ++K+   +D  +A+     +        A    A +  G +V V+G GT+
Sbjct: 117 AEYVSVPARNLIKIPDHVDYEEAAMIEPAAVALH----AVRL-AGITLGDTVVVIGAGTI 171

Query: 97  GLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG 156
           GL A+   ++ GA ++I +D +  K    +  G  D INP +E      E V+ +T G G
Sbjct: 172 GLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEED----VEKVRELTEGRG 227

Query: 157 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAM----VPLNVIALACGGRTLKGT 212
            D   E  G P+ + +AL   + G GKV+++G+    +         I       T++G+
Sbjct: 228 ADLVIEAAGSPATIEQALALARPG-GKVVLVGIPYGDVTLSEEAFEKILR--KELTIQGS 284

Query: 213 ---TFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ--PDCVKVLI 267
                       +  T LD   + + K+  L+TH + LE+   A + L        KVL+
Sbjct: 285 WNSYSAPFPGD-EWRTALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL 343

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score =  101 bits (254), Expect = 4e-25
 Identities = 62/234 (26%), Positives = 109/234 (46%), Gaps = 18/234 (7%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLG 99
           +EY+V+ A+ ++  +  +    A+ +      G  A  + A V  G +V V+G G +GLG
Sbjct: 118 AEYIVVPADALLVPE-GLSLDQAALVEP-LAIGAHAVRR-AGVTAGDTVLVVGAGPIGLG 174

Query: 100 AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 159
            +  A+  G A++I +D +  + E  +  G  D IN  DE        ++ +T G G D 
Sbjct: 175 VIQVAKARG-ARVIVVDIDDERLEFARELGADDTINVGDEDVA---ARLRELTDGEGADV 230

Query: 160 CFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIK- 218
             + TG P+ + EA+E    G G+V+++G+     V              K  T  G + 
Sbjct: 231 VIDATGNPASMEEAVELVAHG-GRVVLVGL-SKGPVTFPDPEF-----HKKELTILGSRN 283

Query: 219 -TKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD--CVKVLITI 269
            T+ D P ++D  ++ +     L+TH    E++ +A  L + P    +KVLI  
Sbjct: 284 ATREDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF 337

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score =  101 bits (254), Expect = 4e-25
 Identities = 66/219 (30%), Positives = 102/219 (46%), Gaps = 13/219 (5%)

Query: 38  TWSEYM-VIDA-NYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGT 95
           T +EY+ +  A N + K+   +D   A  LS    TGY       KV+ G +VA++G G 
Sbjct: 118 TQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGP 177

Query: 96  VGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGM 155
           VGL A+  A+++  +KII +D +  + E  K  G T  +N          E V  +T G 
Sbjct: 178 VGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKG---DAIEQVLELTDGR 234

Query: 156 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDAMVPLNVIALACGGRTLKGTTF 214
           GVD   E  G+P+      E    G G +  +GV G    + L  + +    + +  TT 
Sbjct: 235 GVDVVIEAVGIPATFELCQELVAPG-GHIANVGVHGKPVDLHLEKLWI----KNITITT- 288

Query: 215 GGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKA 253
            G+   +  P LL    + +    +L+TH  KL EI+KA
Sbjct: 289 -GLVDTNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKA 326

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 98.9 bits (247), Expect = 1e-24
 Identities = 65/244 (26%), Positives = 105/244 (43%), Gaps = 37/244 (15%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLG 99
           +E +V+ AN +V +   + P  A+  +    T        A+   G  VAV+GLG VGL 
Sbjct: 55  AERVVVPANLLVPLPDGLPPERAALTALA-ATALNGVRD-AEPRLGERVAVVGLGLVGLL 112

Query: 100 AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 159
           A   A+  GA +++G+D +  ++E  +A G  D +  D                G G D 
Sbjct: 113 AAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTA----------DEIGGRGADV 162

Query: 160 CFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRT-LKGTTF---- 214
             E +G PS L  AL   +   G+V+++G      + L       G     K        
Sbjct: 163 VIEASGSPSALETALRLLRDR-GRVVLVGWYGLKPLLL-------GEEFHFKRLPIRSSQ 214

Query: 215 -GGIKTKSDLPTLLDKCKNKEF--------KLHQLLTHHVKLEEIDKAIQLLKQ--PDCV 263
             GI  + D P    + +N E         +L  L+TH V  E+  +A +LL +  P+C+
Sbjct: 215 VYGI-GRYDRPRRWTEARNLEEALDLLAEGRLEALITHRVPFEDAPEAYRLLFEDPPECL 273

Query: 264 KVLI 267
           KV++
Sbjct: 274 KVVL 277

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 94.6 bits (236), Expect = 1e-22
 Identities = 66/219 (30%), Positives = 101/219 (46%), Gaps = 9/219 (4%)

Query: 50  VVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA 109
           ++K+   +    A  L     TGY  A K A+V  G +VAV+G G VGL AV  A++ GA
Sbjct: 134 LLKLPDGLSDEAALLLGDILPTGYFGA-KRAQVRPGDTVAVIGCGPVGLCAVLSAQVLGA 192

Query: 110 AKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL 169
           A++  +D  P + E+  A G  + IN +D       E V+  T G G D   E  G  + 
Sbjct: 193 ARVFAVDPVPERLERAAALG-AEPINFEDAEPV---ERVREATEGRGADVVLEAVGGAAA 248

Query: 170 LSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDK 229
           L  A +  + G G +  +GV      P   +       TL+   FG    +S  P LL  
Sbjct: 249 LDLAFDLVRPG-GVISSVGVHTAEEFPFPGLDAYNKNLTLR---FGRCPVRSLFPELLPL 304

Query: 230 CKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
            ++    L  L+ H + LEE  +A +L  +   +KV++ 
Sbjct: 305 LESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKVLKVVLD 343

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 89.2 bits (222), Expect = 1e-20
 Identities = 52/218 (23%), Positives = 99/218 (45%), Gaps = 14/218 (6%)

Query: 38  TWSEYMVI---DANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLG 94
           +++EY+ +   D N +V++   +D   A+ L C F T + A   +A+V+ G  VAV G G
Sbjct: 117 SFAEYVAVPRADVN-LVRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCG 175

Query: 95  TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHG 154
            VGL AV  A   G A++I +D +  K E  +  G    +N  +  +  ++  V+ +T G
Sbjct: 176 GVGLSAVMIASALG-ARVIAVDIDDDKLELARELGAVATVNASEVED--VAAAVRDLTGG 232

Query: 155 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV--GVDAMVPLNVIALACGGRTLKGT 212
            G     +  G+P     ++ + +   G+ + +G+  G +A V L +  +      + G 
Sbjct: 233 -GAHVSVDALGIPETCRNSVASLRKR-GRHVQVGLTLGEEAGVALPMDRVVARELEIVG- 289

Query: 213 TFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEI 250
           + G          +L    + +     L+   + L+E 
Sbjct: 290 SHG--MPAHRYDAMLALIASGKLDPEPLVGRTISLDEA 325

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 88.4 bits (220), Expect = 2e-20
 Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 51/248 (20%)

Query: 41  EYMVIDANYVVKVDPSIDPSDASF---LSCGFTTGYGAAW--KEAKVEKGSSVAVLGLGT 95
           EY+V+ A  V K+  ++   +A+    LSC       A        ++ G SV V G G 
Sbjct: 118 EYVVVPAKQVYKIPDNLSFEEAALAEPLSC-------AVHGLDLLGIKPGDSVLVFGAGP 170

Query: 96  VGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGM 155
           +GL      +++GA+++   + N  K E  K  G T+ ++P  E  ++  E         
Sbjct: 171 IGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPY----- 225

Query: 156 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG-VDAMVPLN--------------VI 200
           G D   E TGVP  L +A+E  + G G V+V GV   DA V ++               I
Sbjct: 226 GFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAPDARVSISPFEIFQKELTIIGSFI 284

Query: 201 ALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP 260
                 R +                LL+  K     +  L++H + LEE+ +A++ ++  
Sbjct: 285 NPYTFPRAIA---------------LLESGK---IDVKGLVSHRLPLEEVPEALEGMRSG 326

Query: 261 DCVKVLIT 268
             +KV++ 
Sbjct: 327 GALKVVVV 334

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 88.4 bits (220), Expect = 2e-20
 Identities = 69/238 (28%), Positives = 109/238 (45%), Gaps = 26/238 (10%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVE--KGSSVAVLGLGTVG 97
           +EY+V+    + K D  I P  AS          G A          G SV + G G +G
Sbjct: 122 AEYVVVPEENLWKNDKDIPPEIASIQE-----PLGNAVHTVLAGDVSGKSVLITGCGPIG 176

Query: 98  LGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGV 157
           L A+  A+  GA+ +I  D NP++ E  K  G    INP +E        VK +T G GV
Sbjct: 177 LMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVV----EVKSVTDGTGV 232

Query: 158 DYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI 217
           D   E +G P  + + L+    G G+V ++G+     V +++  L       KG T  GI
Sbjct: 233 DVVLEMSGNPKAIEQGLKALTPG-GRVSILGL-PPGPVDIDLNNLV----IFKGLTVQGI 286

Query: 218 ------KTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
                 +T   +  LL   K+ +  L  ++TH + LE+ ++A +L++   C KV++  
Sbjct: 287 TGRKMFETWYQVSALL---KSGKVDLSPVITHKLPLEDFEEAFELMRSGKCGKVVLYP 341

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 86.1 bits (214), Expect = 2e-19
 Identities = 54/222 (24%), Positives = 104/222 (46%), Gaps = 18/222 (8%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV-EKGSSVAVLGLGTVGL 98
           +EY+++ +  +VK+   +DP +A+ L+    T Y A  K     + GS+V V+G+G  GL
Sbjct: 122 AEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVG--GL 179

Query: 99  G--AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG 156
           G  AV   R    A +I +D++    +  +  G    +N  D+      E V+ +T G G
Sbjct: 180 GHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDV----VEEVRELTGGRG 235

Query: 157 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGG 216
            D   +  G    L+ A +    G G+ +++G G      L    L     ++ G+ +G 
Sbjct: 236 ADAVIDFVGSDETLALAAKLLAKG-GRYVIVGYG--GHGRLPTSDLVPTEISVIGSLWG- 291

Query: 217 IKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLK 258
             T+++L  ++   ++ + K+         LE+ ++A+  L+
Sbjct: 292 --TRAELVEVVALAESGKVKVE---ITKFPLEDANEALDRLR 328

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score = 85.1 bits (211), Expect = 4e-19
 Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 9/199 (4%)

Query: 71  TGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM 130
           TG+ AA   A V  GS+V V+G G VGL AV  A+  GA +II + ++  ++   + FG 
Sbjct: 156 TGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGA 214

Query: 131 TDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG 190
           TD +    E  +     V+ +T G+G D   EC G    + +A+   + G G+V  +GV 
Sbjct: 215 TDIV---AERGEEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPG-GRVGYVGVP 270

Query: 191 VDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEI 250
               V L+V  L      L G   G    +  LP LLD          ++    + L+E+
Sbjct: 271 HGG-VELDVRELFFRNVGLAG---GPAPVRRYLPELLDDVLAGRINPGRVFDLTLPLDEV 326

Query: 251 DKAIQLLKQPDCVKVLITI 269
            +  + + +   +KVL+  
Sbjct: 327 AEGYRAMDERRAIKVLLRP 345

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 82.0 bits (203), Expect = 5e-18
 Identities = 63/239 (26%), Positives = 101/239 (42%), Gaps = 15/239 (6%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG-LGTV 96
            ++EY+V+ A+++V +   +   +A+ L     T + A +  A ++ G +V V G  G V
Sbjct: 96  GYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGV 155

Query: 97  GLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG 156
           G  A+  A+  GA  +  +     K E  K  G    IN  +E      E V+ +T G G
Sbjct: 156 GSAAIQLAKALGATVVAVVSS-SEKLELLKELGADHVINYREE---DFVEQVRELTGGKG 211

Query: 157 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDAMVPLNVIALACGGRTLKGTTFG 215
           VD   +  G     + +L     G G+++ IG       VPLN++ L     TL+G T G
Sbjct: 212 VDVVLDTVG-GDTFAASLAALAPG-GRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLG 269

Query: 216 G---IKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAI-QLLKQPDCV-KVLITI 269
                     L  L D       KL  ++     L E   A   LL +     KV++ +
Sbjct: 270 SRDPEALAEALAELFDLL--ASGKLKPVIDRVYPLAEAPAAAAHLLLERRTTGKVVLKV 326

Length = 326

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 82.2 bits (203), Expect = 6e-18
 Identities = 53/237 (22%), Positives = 97/237 (40%), Gaps = 14/237 (5%)

Query: 40  SEYMVIDANYVVKVDPSID--PSDASFLSCGFTTGYGAAW-----KEAKVEKGSSVAVLG 92
           +EY+ ++A Y  +++   +    D +F +         A+     +      G+ V V G
Sbjct: 152 AEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLFIRGGGFRPGAYVVVYG 211

Query: 93  LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGIT 152
            G +GL A+  A+  GA+K+I  + +  ++   K  G     NP    +    E V  +T
Sbjct: 212 AGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVT 271

Query: 153 HGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGT 212
            G G D   E  G P      +E +    GK++ IG      VPL++  L       +  
Sbjct: 272 KGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRA-ATTVPLHLEVLQVR----RAQ 326

Query: 213 TFG--GIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
             G  G       P+++    + +  + +++T    LE I +AI+   +    K+ I
Sbjct: 327 IVGAQGHSGHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASERTDGKITI 383

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 81.4 bits (202), Expect = 8e-18
 Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 25/229 (10%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVG 97
           T++EY + DA YV  +   +    A+ L C   T Y A  K+A ++ G  V + G G  G
Sbjct: 120 TFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKAL-KKAGLKPGDWVVISGAGG-G 177

Query: 98  LG--AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGM 155
           LG   V  A+  G  ++I ID    K E  K  G   F++          E VK +T G 
Sbjct: 178 LGHLGVQYAKAMG-LRVIAIDVGDEKLELAKELGADAFVDFKKS---DDVEAVKELTGGG 233

Query: 156 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFG 215
           G           +   +AL+  + G G ++ +G+     +PL+   L   G T+ G+  G
Sbjct: 234 GAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLVG 292

Query: 216 GIKTKSDLPTLLD-----KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 259
              T+ DL   L+     K K    ++       V LE++++  + +++
Sbjct: 293 ---TRQDLQEALEFAARGKVK-PHIQV-------VPLEDLNEVFEKMEE 330

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 80.9 bits (200), Expect = 9e-18
 Identities = 59/238 (24%), Positives = 97/238 (40%), Gaps = 16/238 (6%)

Query: 37  STWSEYMVIDANYVVKVDPSID--PSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLG 94
             ++EY + DA++ V +   +D        L C         ++   +  G +VAV+G G
Sbjct: 85  GAFAEYDLADADHAVPLPSLLDGQAFPGEPLGCALN-----VFRRGWIRAGKTVAVIGAG 139

Query: 95  TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHG 154
            +GL  +  A   GA ++I ID+ P +    +  G T+ +  D E   +I E V+ +T G
Sbjct: 140 FIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSE---AIVERVRELTGG 196

Query: 155 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTF 214
            G D   E  G    L  A E      G++++ G   D   P+        G  L     
Sbjct: 197 AGADVVIEAVGHQWPLDLAGELVAER-GRLVIFGYHQDGPRPVPFQTWNWKGIDLINAVE 255

Query: 215 G--GIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQ-LLKQPD-CVKVLIT 268
               I     +   +    +    L  LLTH   LEE+  A +   ++PD  +K +I 
Sbjct: 256 RDPRIGL-EGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKGVIV 312

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 78.5 bits (194), Expect = 7e-17
 Identities = 62/233 (26%), Positives = 109/233 (46%), Gaps = 19/233 (8%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG-LGTV 96
            ++EY+ +    +VK+  ++    A+  +C   T   A  K A V+KG +V V G  G V
Sbjct: 117 GFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL-KRAGVKKGDTVLVTGAGGGV 175

Query: 97  GLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG 156
           G+ A+  A+  G A++I + ++P K +  K  G    I+         SE VK +    G
Sbjct: 176 GIHAIQLAKALG-ARVIAVTRSPEKLKILKELGADYVID-----GSKFSEDVKKLG---G 226

Query: 157 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGG 216
            D   E  G P+ + E+L +   G G++++IG       PL    L      + G+    
Sbjct: 227 ADVVIELVGSPT-IEESLRSLNKG-GRLVLIGNVTPDPAPLRPGLLILKEIRIIGSISA- 283

Query: 217 IKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCV-KVLIT 268
             TK+D+   L   K  + K   ++   V LE+I++A++ LK    V ++++ 
Sbjct: 284 --TKADVEEALKLVKEGKIK--PVIDRVVSLEDINEALEDLKSGKVVGRIVLK 332

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 75.8 bits (187), Expect = 7e-16
 Identities = 52/231 (22%), Positives = 96/231 (41%), Gaps = 12/231 (5%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLG 99
           +EYM++    +++V   +   DA+ L+     G  A  + A++  G    V+G G +GL 
Sbjct: 119 AEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHAVRR-ARLTPGEVALVIGCGPIGLA 176

Query: 100 AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 159
            +   +  G   I+  D +P ++    A G    ++P  +   +          G     
Sbjct: 177 VIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAELARAGGPKPAV 236

Query: 160 CFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTT--FGGI 217
            FEC G P L+ + +E    G G+++V+GV    M   N+          K  T  F   
Sbjct: 237 IFECVGAPGLIQQIIEGAPPG-GRIVVVGV---CMESDNIEPALA---IRKELTLQFSLG 289

Query: 218 KTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI 267
            T  +    LD     +  +  ++T  V L+ +  A + L+ P+   K+L+
Sbjct: 290 YTPEEFADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILV 340

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 72.5 bits (178), Expect = 6e-15
 Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 5/128 (3%)

Query: 84  KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKS 143
           KG  V V+G G +GL A   A   GAA+++  D +P ++E   +FG T    P+      
Sbjct: 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVL---- 175

Query: 144 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA 203
            +E   G+ +G GVD   E +G  + +   LE+  VG   V+   V     V L+   + 
Sbjct: 176 -AERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVV 234

Query: 204 CGGRTLKG 211
               T++G
Sbjct: 235 RRWLTIRG 242

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 73.0 bits (179), Expect = 7e-15
 Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 11/230 (4%)

Query: 39  WSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGL 98
           ++EY V+ A  + K   SI P  A+        G       A    G SV V G G +GL
Sbjct: 119 FAEYAVVPAQNIWKNPKSIPPEYATIQE---PLGNAVHTVLAGPISGKSVLVTGAGPIGL 175

Query: 99  GAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDE-PNKSISELVKGITHGMGV 157
            A+  A+  GA  +I  D N ++ E  K  G T  +NP  E   K +++L    T G GV
Sbjct: 176 MAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADL----TDGEGV 231

Query: 158 DYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI 217
           D   E +G P  L + L+    G G+V ++G+    +       +   G T+ G T  G 
Sbjct: 232 DVFLEMSGAPKALEQGLQAVTPG-GRVSLLGLPPGKVTIDFTNKVIFKGLTIYGIT--GR 288

Query: 218 KTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
                  T+    ++ +  L  ++TH  K ++ +K  +L++     KV++
Sbjct: 289 HMFETWYTVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQTGKVIL 338

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 72.8 bits (179), Expect = 8e-15
 Identities = 61/238 (25%), Positives = 99/238 (41%), Gaps = 28/238 (11%)

Query: 40  SEYMVIDANYVV-KVDPSIDPSDASF---LSCGFTTGYGAAWKEAKVEKGSSVAVLGLGT 95
           +EYM      +V KV   I P DA     L+C        A   A ++    V + G G 
Sbjct: 131 AEYMRFPKEAIVHKVPDDIPPEDAILIEPLACAL-----HAVDRANIKFDDVVVLAGAGP 185

Query: 96  VGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGM 155
           +GLG +  AR+    K+I +D    +    + FG    +NP   P   + E +K +T G 
Sbjct: 186 LGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNP---PEVDVVEKIKELTGGY 242

Query: 156 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDAMVPLNVIA----LACGGRTLK 210
           G D   E TG PS + + L   +   G+ +   V G    V  ++I     L   G  L 
Sbjct: 243 GCDIYIEATGHPSAVEQGLNMIR-KLGRFVEFSVFGDPVTVDWSIIGDRKELDVLGSHLG 301

Query: 211 GTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP-DCVKVLI 267
              +         P  +D   +       ++TH   LE+ ++A +L+ +  D +KV++
Sbjct: 302 PYCY---------PIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL 350

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 72.2 bits (178), Expect = 1e-14
 Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 13/180 (7%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLG 99
           +EY+V+    +V+    +   +A+ L C   T + A +    ++ G +V V G G V L 
Sbjct: 116 AEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLF 175

Query: 100 AVDGARMHGAAKII--GIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGV 157
           A+  A+  GA  I     D+   K E+ KA G    IN    P+    E V  +T G GV
Sbjct: 176 ALQFAKAAGARVIATSSSDE---KLERAKALGADHVINYRTTPD--WGEEVLKLTGGRGV 230

Query: 158 DYCFECTGVPSLLSEALETTKVGKGKVIVIGV--GVDAMVPLNVIALACGGRTLKGTTFG 215
           D+  E  G P  L+++++    G G + +IG   G +A  P+ ++ L   G TL+G   G
Sbjct: 231 DHVVEVGG-PGTLAQSIKAVAPG-GVISLIGFLSGFEA--PVLLLPLLTKGATLRGIAVG 286

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 70.7 bits (174), Expect = 4e-14
 Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 15/222 (6%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLG 99
           +EY+++  +  +     +DP+ A+ L+C   T Y A  K   +     V ++G G +GL 
Sbjct: 131 AEYVIVPHSRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLM 190

Query: 100 AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDE-PNKSISELVKGITHGMGVD 158
           A+   +  G A II +D +  K E  KA G    +N  D    K I +   G     GVD
Sbjct: 191 ALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSDPDAAKRIIKAAGG-----GVD 245

Query: 159 YCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDAMVPLNVIALACGGRTLKGTTFGGI 217
              +     +  S A +    G GK++++G+ G +A +PL ++ L     T++G+  G +
Sbjct: 246 AVIDFVNNSATASLAFDILAKG-GKLVLVGLFGGEATLPLPLLPL--RALTIQGSYVGSL 302

Query: 218 KTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 259
           +   +L  L      K  KL  +      L +++ A+  LK 
Sbjct: 303 EELRELVALA-----KAGKLKPIPLTERPLSDVNDALDDLKA 339

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 69.7 bits (171), Expect = 9e-14
 Identities = 67/254 (26%), Positives = 112/254 (44%), Gaps = 30/254 (11%)

Query: 16  MLDSTSRMSVRGQKLY----HIFSCST---WSEYMVIDANYVVKVDPSIDPSDASFLSCG 68
           + D T  M + G ++      I    +   ++EY+V+    + K+  SI    A+ L   
Sbjct: 88  VFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVA 147

Query: 69  FTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA 127
             T Y A  K A +  G +V V G  G  G+ AV  A+M G A++I + +  W KE    
Sbjct: 148 ALTAYHAL-KTAGLGPGETVVVFGASGNTGIFAVQLAKMMG-AEVIAVSRKDWLKE---- 201

Query: 128 FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI 187
           FG  + ++ D+     + E VK IT  M  D      G  S    +L     G G+++  
Sbjct: 202 FGADEVVDYDE-----VEEKVKEIT-KM-ADVVINSLG-SSFWDLSLSVLGRG-GRLVTF 252

Query: 188 GVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKL 247
           G      V L++  L     ++ G+T G   T+ +L  L+   K+ + K+ +      KL
Sbjct: 253 GTLTGGEVKLDLSDLYSKQISIIGSTGG---TRKELLELVKIAKDLKVKVWKTF----KL 305

Query: 248 EEIDKAIQLLKQPD 261
           EE  +A++ L   +
Sbjct: 306 EEAKEALKELFSKE 319

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 69.4 bits (171), Expect = 1e-13
 Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 16/181 (8%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLG 99
           ++++V+D  +V K+   +D + A+ L C   T Y +  K   V  G  V V+G+G  GLG
Sbjct: 126 ADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVY-SPLKRNGVGPGKRVGVVGIG--GLG 182

Query: 100 --AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGV 157
             AV  A+  G A++    ++P KKE     G  +FI   D                  +
Sbjct: 183 HLAVKFAKALG-AEVTAFSRSPSKKEDALKLGADEFIATKDPEAMK--------KAAGSL 233

Query: 158 DYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI 217
           D   +       L   L   K G G ++++G   + + P+    L  G +++ G+  GG 
Sbjct: 234 DLIIDTVSASHDLDPYLSLLKPG-GTLVLVGAPEEPL-PVPPFPLIFGRKSVAGSLIGGR 291

Query: 218 K 218
           K
Sbjct: 292 K 292

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 71/234 (30%), Positives = 105/234 (44%), Gaps = 23/234 (9%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVGL 98
           +EY  +    +VKV P++    A  + C     Y    + A V+KG +V V G  G VG+
Sbjct: 119 AEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGL-RRAGVKKGETVLVTGAGGGVGI 177

Query: 99  GAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVD 158
            A+  A+  G AK+I +  +  K +    +   D++          SE VK I    G D
Sbjct: 178 HAIQVAKALG-AKVIAVTSSESKAKIVSKYA--DYV----IVGSKFSEEVKKIG---GAD 227

Query: 159 YCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI- 217
              E  G P+ L E+L +  +G GK+I IG  VD   P    +L  G   LK     G  
Sbjct: 228 IVIETVGTPT-LEESLRSLNMG-GKIIQIG-NVD---PSPTYSLRLGYIILKDIEIIGHI 281

Query: 218 -KTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCV-KVLITI 269
             TK D+   L      E K+  ++   V L EIDKA++ LK    + K+L+  
Sbjct: 282 SATKRDVEEALKLV--AEGKIKPVIGAEVSLSEIDKALEELKDKSRIGKILVKP 333

Length = 334

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 53/234 (22%), Positives = 104/234 (44%), Gaps = 13/234 (5%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGT-V 96
            ++EY+ + A  ++ +  ++   +A+     F T +      A++  G +V V G G+ V
Sbjct: 120 GYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGV 179

Query: 97  GLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG 156
           G  A+  A++ G A +I    +  K E+ K  G    I+   E        V+ +T   G
Sbjct: 180 GSAAIQIAKLFG-ATVIATAGSEDKLERAKELGADYVIDYRKED---FVREVRELTGKRG 235

Query: 157 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGG 216
           VD   E  G  +   ++L++   G G+++  G       P+++  +     ++ G+T G 
Sbjct: 236 VDVVVEHVGA-ATWEKSLKSLARG-GRLVTCGATTGYEAPIDLRHVFWRQLSILGSTMG- 292

Query: 217 IKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCV-KVLITI 269
             TK++L   L        KL  ++     LEE  +A + L+  +   K+++T 
Sbjct: 293 --TKAELDEALRLVFRG--KLKPVIDSVFPLEEAAEAHRRLESREQFGKIVLTP 342

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 67.7 bits (166), Expect = 4e-13
 Identities = 42/176 (23%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASF---LSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTV 96
           +EY+++    + ++  ++    A+    L+        A  + + +  G +V V G G +
Sbjct: 121 AEYVLVPEESLHELPENLSLEAAALTEPLAVA----VHAVAERSGIRPGDTVVVFGPGPI 176

Query: 97  GLGAVDGARMHGAAKII-GIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGM 155
           GL A   A++ GA  ++ G +K+  + +  K  G    +N  +E    ++ELV  IT G 
Sbjct: 177 GLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADA-VNGGEE---DLAELVNEITDGD 232

Query: 156 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKG 211
           G D   EC+G    L +ALE  + G G+++ +G+       ++V  +     ++ G
Sbjct: 233 GADVVIECSGAVPALEQALELLRKG-GRIVQVGIFGPLAASIDVERIIQKELSVIG 287

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 67.6 bits (166), Expect = 6e-13
 Identities = 60/229 (26%), Positives = 96/229 (41%), Gaps = 31/229 (13%)

Query: 61  DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW 120
           D   LS  F TG+    + A V+ G +VAV G G VGL A   A + GA+++  +D  P 
Sbjct: 154 DYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPE 212

Query: 121 KKEKGKAFGMT--DFINPDDEPNKSISELVKGITHGM---GVDYC-FECTG-----VPSL 169
           + +  ++ G    DF + D        E + G+  G     VD   +E         P+L
Sbjct: 213 RLDLAESIGAIPIDFSDGDP------VEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNL 266

Query: 170 -LSEALETTKVGKGKVIVIGV--------GVDAMVPLNVIALACGGRTLKGTTFG-GI-K 218
            L++ +  T+ G G + ++GV        G  A      ++   G    KG +FG G   
Sbjct: 267 VLNQLIRVTRPG-GGIGIVGVYVAEDPGAGDAAAKQGE-LSFDFGLLWAKGLSFGTGQAP 324

Query: 219 TKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
            K     L D       K   +++H + LE+  +A     +    KV+I
Sbjct: 325 VKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRLETKVVI 373

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 57/238 (23%), Positives = 92/238 (38%), Gaps = 29/238 (12%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASF---LSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTV 96
            EY+V+DA+  V +   +    A+    L+         A   A    G  V V G G +
Sbjct: 123 REYLVVDASQCVPLPDGLSLRRAALAEPLAVAL-----HAVNRAGDLAGKRVLVTGAGPI 177

Query: 97  GLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG 156
           G   V  AR  GAA+I+  D         +A G  + +N   +P      L         
Sbjct: 178 GALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDP------LAAYAADKGD 231

Query: 157 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAM-VPLNVIALACGGR--TLKGT- 212
            D  FE +G P+ L+ AL   + G G V+ +G+    + +PLN +      +   L+G+ 
Sbjct: 232 FDVVFEASGAPAALASALRVVRPG-GTVVQVGMLGGPVPLPLNALV----AKELDLRGSF 286

Query: 213 TFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLK-QPDCVKVLITI 269
            F       +    +         +  L+T    LEE  +A  L   +   VKV ++ 
Sbjct: 287 RFD-----DEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF 339

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 64.8 bits (159), Expect = 4e-12
 Identities = 57/244 (23%), Positives = 95/244 (38%), Gaps = 49/244 (20%)

Query: 41  EYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEK-------GSSVAVLGL 93
           EY+VI A  V K+   I    A+         +G A     V         G  V + G 
Sbjct: 123 EYLVIPAFNVWKIPDDIPDDLAAIFD-----PFGNA-----VHTALSFDLVGEDVLITGA 172

Query: 94  GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITH 153
           G +G+ A   A+  GA  ++  D N ++ E  +  G T  +N   E    + +++  +  
Sbjct: 173 GPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKE---DLRDVMAELGM 229

Query: 154 GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAM-VPLN-VIALACGGRTLKG 211
             G D   E +G PS   + L+    G G++ ++G+    M +  N VI         KG
Sbjct: 230 TEGFDVGLEMSGAPSAFRQMLDNMNHG-GRIAMLGIPPGDMAIDWNKVI--------FKG 280

Query: 212 TTFGGI----------KTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD 261
            T  GI          K  + L + LD        L  ++TH   +++  K  + ++   
Sbjct: 281 LTIKGIYGREMFETWYKMSALLQSGLD--------LSPIITHRFPIDDFQKGFEAMRSGQ 332

Query: 262 CVKV 265
             KV
Sbjct: 333 SGKV 336

Length = 341

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 64.2 bits (156), Expect = 8e-12
 Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 13/164 (7%)

Query: 39  WSEYMVIDANYVVKVDPS------IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG 92
           ++ ++V+ A  +  VD +      +     S ++   TT Y AA + A ++KG  V V+G
Sbjct: 116 FASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAVQ-AGLKKGDLVIVIG 174

Query: 93  LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGIT 152
            G VG   V  A+  GAA ++ ID +P K E  K FG    +NP D+  + + +L+K   
Sbjct: 175 AGGVGGYMVQTAKAMGAA-VVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFA 233

Query: 153 HGMGVDY----CFECTGVPSLLSEALETTKVGKGKVIVIGVGVD 192
              G+       FEC+G       AL     G G ++V+G  + 
Sbjct: 234 KARGLRSTGWKIFECSGSKPGQESALSLLSHG-GTLVVVGYTMA 276

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 16/187 (8%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLG 99
           +E  ++ A+Y VKV   +DP+ AS ++C   T Y A  K + ++ G  +A+ G G +G  
Sbjct: 119 AEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNL 177

Query: 100 AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPN--KSISELVKGITHGMGV 157
           A+  A+    AK+I +D N  K    K  G    IN     +  K I E   G  H   V
Sbjct: 178 ALQYAKNVFNAKVIAVDINDDKLALAKEVGADLTINSKRVEDVAKIIQEKTGGA-HAAVV 236

Query: 158 DYCFECTGVP-SLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGG 216
                 T V  +  ++A++  + G G+V+ +G+  ++M  L++  L   G  + G+  G 
Sbjct: 237 ------TAVAKAAFNQAVDAVRAG-GRVVAVGLPPESM-DLSIPRLVLDGIEVVGSLVG- 287

Query: 217 IKTKSDL 223
             T+ DL
Sbjct: 288 --TRQDL 292

Length = 338

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 61.4 bits (150), Expect = 6e-11
 Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 7/149 (4%)

Query: 41  EYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLG 99
           E +V+ A  V  +   +   +A+ L   + T Y A  + A+++ G +V VLG  G VGL 
Sbjct: 96  EEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLA 155

Query: 100 AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 159
           AV  A+  G A++I    +  K    +A G    I+  D     + E VK +T G GVD 
Sbjct: 156 AVQLAKALG-ARVIAAASSEEKLALARALGADHVIDYRDPD---LRERVKALTGGRGVDV 211

Query: 160 CFECTGVPSLLSEALETTKVGKGKVIVIG 188
            ++  G   +   +L +   G G+++VIG
Sbjct: 212 VYDPVGGD-VFEASLRSLAWG-GRLLVIG 238

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 61.1 bits (149), Expect = 6e-11
 Identities = 57/260 (21%), Positives = 99/260 (38%), Gaps = 18/260 (6%)

Query: 18  DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAW 77
              S + V GQ++  +    TW EY+V  A+ ++ V  SI    A+ L     T +    
Sbjct: 73  SGVSGLLV-GQRVLPLGGEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLT 131

Query: 78  KEAKVEKGSSVAVLGLG-TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINP 136
           +  K+  G  V        VG   +  A++ G  K I + +   + E+ KA G  + I+ 
Sbjct: 132 EYLKLPPGDWVIQNAANSAVGRMLIQLAKLLG-FKTINVVRRDEQVEELKALGADEVIDS 190

Query: 137 DDEPNKSISELVKGITHGMGVDYCFECTG--VPSLLSEALETTKVGKGKVIVIGVGVDAM 194
             E    +++ VK  T G G     +  G    + L+ +L       G ++  G+     
Sbjct: 191 SPE---DLAQRVKEATGGAGARLALDAVGGESATRLARSLRPG----GTLVNYGLLSGEP 243

Query: 195 VPLNVIALACGGRTLKG---TTFGGIKTKSDLPTLLDKCKNK--EFKLHQLLTHHVKLEE 249
           VP           T++G     +    TK        +         L   +     LE+
Sbjct: 244 VPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTPVGAKFPLED 303

Query: 250 IDKAIQLLKQPDCV-KVLIT 268
            ++A+   +QP    KVL+T
Sbjct: 304 FEEAVAAAEQPGRGGKVLLT 323

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 14/189 (7%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLG 99
           +EYMV DA Y V +   +  + A+ L C   T Y +A ++A    G  VAVLG+G +G  
Sbjct: 119 AEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVY-SALRDAGPRPGERVAVLGIGGLGHL 177

Query: 100 AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 159
           AV  AR  G  + + I ++P K+E  +  G  + ++       S +EL +    G G D 
Sbjct: 178 AVQYARAMG-FETVAITRSPDKRELARKLGADEVVD-------SGAELDEQAAAG-GADV 228

Query: 160 CFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT 219
                   +    AL   + G G+++++G+        ++  L    +++ G+T GG   
Sbjct: 229 ILVTVVSGAAAEAALGGLRRG-GRIVLVGLPESPPFSPDIFPLIMKRQSIAGSTHGGRA- 286

Query: 220 KSDLPTLLD 228
             DL   LD
Sbjct: 287 --DLQEALD 293

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 50/181 (27%), Positives = 79/181 (43%), Gaps = 7/181 (3%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTV 96
           T++EY ++ A  VVK+   +   +A+ L   + T YGA  + A +  G SV +     +V
Sbjct: 98  TYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSV 157

Query: 97  GLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG 156
           GL A+  A   G A +I   +   K++   A G    I  D+E    +   V  IT G G
Sbjct: 158 GLAAIQIANAAG-ATVIATTRTSEKRDALLALGAAHVIVTDEED---LVAEVLRITGGKG 213

Query: 157 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGG 216
           VD  F+  G P   ++  +    G G ++V G       P  + A      T +G +   
Sbjct: 214 VDVVFDPVGGPQ-FAKLADALAPG-GTLVVYGALSGEPTPFPLKAALKKSLTFRGYSLDE 271

Query: 217 I 217
           I
Sbjct: 272 I 272

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 5/136 (3%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLG 99
           +EY+V+    +  +   +   D +F+    T G   A+  A+  +G +V ++G GT+GL 
Sbjct: 118 AEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGL-HAFHLAQGCEGKNVIIIGAGTIGLL 175

Query: 100 AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 159
           A+  A   GA  +  ID N  K    K+ G     N  +     I  +++ +     +  
Sbjct: 176 AIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLI-- 233

Query: 160 CFECTGVPSLLSEALE 175
             E  GVP  +  A+E
Sbjct: 234 -LETAGVPQTVELAIE 248

Length = 347

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 6/163 (3%)

Query: 27  GQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGS 86
           G ++  +     ++EY V    +V+ +       +A+ +   F T +    K   V+KG 
Sbjct: 83  GDRVMALLPGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQ 142

Query: 87  SVAV-LGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSIS 145
           SV +  G   VG  A   A  +GAA II    +  K +  K       I   DE   +  
Sbjct: 143 SVLIHAGASGVGTAAAQLAEKYGAATIITT-SSEEKVDFCKKLAAIILIRYPDEEGFAPK 201

Query: 146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIG 188
             VK +T   GV+   +C G  S LSE  E   V  GK IV G
Sbjct: 202 --VKKLTGEKGVNLVLDCVG-GSYLSETAEVLAV-DGKWIVYG 240

Length = 334

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 54.4 bits (131), Expect = 2e-08
 Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 5/125 (4%)

Query: 76  AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFIN 135
           A + A +   ++V V+G G +GL  +  AR  GA +I+ +D +  +    K  G  + + 
Sbjct: 173 ACRRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVL 232

Query: 136 PDDEPNKSISELVKGITHGMG--VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDA 193
                    SE+ + I   MG  +D  F+C G    +S ALE T+ G GKV ++G+G + 
Sbjct: 233 VSTNIEDVESEVEE-IQKAMGGGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVGMGHNE 290

Query: 194 M-VPL 197
           M VPL
Sbjct: 291 MTVPL 295

Length = 364

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)

Query: 39  WSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVG 97
            +EY+ +DA Y+V V   +D ++A  L   + T Y    + AKV  G  V + G  G VG
Sbjct: 94  NAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVG 153

Query: 98  LGAVDGARMHGAAKIIG 114
              ++ A + G A++ G
Sbjct: 154 QALLELALLAG-AEVYG 169

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 43/195 (22%), Positives = 77/195 (39%), Gaps = 54/195 (27%)

Query: 39  WSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGL 98
           ++EYM+  A  + ++   +D ++A+ L C   T + A  + +  + G  VAV G+G  GL
Sbjct: 119 YAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNAL-RNSGAKPGDLVAVQGIG--GL 175

Query: 99  G--AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDE----------------- 139
           G  AV  A   G  + + I +   K +  +  G   +I+   E                 
Sbjct: 176 GHLAVQYAAKMG-FRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILA 234

Query: 140 --PN-KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVP 196
             PN K+IS LV G+                              GK++++G      V 
Sbjct: 235 TAPNAKAISALVGGLAPR---------------------------GKLLILGA-AGEPVA 266

Query: 197 LNVIALACGGRTLKG 211
           ++ + L  G +++ G
Sbjct: 267 VSPLQLIMGRKSIHG 281

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 49.1 bits (118), Expect = 7e-07
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 8/163 (4%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG-LGTV 96
           T +EY+V+ A+ +V +   +     + L     T Y A +  A  + G +V V G  G V
Sbjct: 98  TAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAV 157

Query: 97  GLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG 156
           G  AV  AR  G A++I    +    E  +  G     N   E    +++ +   T G G
Sbjct: 158 GHAAVQLARWAG-ARVIATASSAEGAELVRQAGADAVFNYRAE---DLADRILAATAGQG 213

Query: 157 VDYCFECTGVPSLLSEALETTKVGKGKVIVIG-VGVDAMVPLN 198
           VD   E     + L++ L+    G G+++V G  G+   +P+N
Sbjct: 214 VDVIIEVLANVN-LAKDLDVLAPG-GRIVVYGSGGLRGTIPIN 254

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 48.7 bits (117), Expect = 9e-07
 Identities = 32/151 (21%), Positives = 65/151 (43%), Gaps = 12/151 (7%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG-LGTV 96
            ++EY+V+ A+ +     ++   +A+ L     T + A ++   ++ G +V + G  G V
Sbjct: 98  AYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGV 157

Query: 97  GLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG 156
           G  AV  A+  G A++I         +  ++ G  + I+             +      G
Sbjct: 158 GSFAVQLAKARG-ARVIATASAA-NADFLRSLGADEVIDYTK-------GDFERAAAPGG 208

Query: 157 VDYCFECTGVPSLLSEALETTKVGKGKVIVI 187
           VD   +  G  + L+ +L   K G G+++ I
Sbjct: 209 VDAVLDTVGGET-LARSLALVKPG-GRLVSI 237

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 51/160 (31%), Positives = 76/160 (47%), Gaps = 18/160 (11%)

Query: 40  SEY-MVIDANYVVKVDPSIDPS-----DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL 93
           SEY MV  A++ +   P  D +     D + LS  F TGY  A   A V  GS+V + G 
Sbjct: 136 SEYVMVPYADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGAVT-AGVGPGSTVYIAGA 194

Query: 94  GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM-TDFINPDDEPNKSISELVKGIT 152
           G VGL A   A++ GAA +I  D NP +  + ++FG  T  ++ D    + I +++    
Sbjct: 195 GPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPE 254

Query: 153 HGMGVDYC-FECTG--------VPS-LLSEALETTKVGKG 182
               VD   FE  G         P+ +L+  +E T+VG  
Sbjct: 255 VDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGA 294

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 29/224 (12%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLG 99
           +EYMV D  +   +    D  +A+ L C    GY  A K A ++ G  + + G G     
Sbjct: 124 AEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYR-ALKLAGLKPGQRLGLYGFGASAHL 182

Query: 100 AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSI-SELVKGITHGMGVD 158
           A+  AR  G A++    ++   +E  +  G     + DD P + + + ++          
Sbjct: 183 ALQIARYQG-AEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAII---------- 231

Query: 159 YCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIK 218
             F    V +L+  AL   K G G+V++ G+ +  +   +   L  G +T++        
Sbjct: 232 --F--APVGALVPAALRAVKKG-GRVVLAGIHMSDIPAFD-YELLWGEKTIRSVANL--- 282

Query: 219 TKSDLPTLLDKCKNKEFKLHQLLTHH--VKLEEIDKAIQLLKQP 260
           T+ D    L      E  +           LEE ++A+Q LK+ 
Sbjct: 283 TRQDGEEFLKLA--AEIPIK---PEVETYPLEEANEALQDLKEG 321

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 8/137 (5%)

Query: 76  AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFIN 135
           A  +A   +G  V V G+G +G   V   +  GAA+I+  D +P      +  G    +N
Sbjct: 161 AAHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVN 220

Query: 136 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMV 195
           P ++      +L          D  FE +G PS ++  LE T+  KG ++ +G+G  A  
Sbjct: 221 PQND------DLDHYKAEKGYFDVSFEVSGHPSSINTCLEVTR-AKGVMVQVGMG-GAPP 272

Query: 196 PLNVIALACGGRTLKGT 212
              ++ L     +LKG+
Sbjct: 273 EFPMMTLIVKEISLKGS 289

Length = 343

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 6/129 (4%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTV 96
           +++EY V+DA  V+ +  S+   +A+ L C   T Y A +K+ ++E G ++ + G  G V
Sbjct: 95  SFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGV 154

Query: 97  GLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG 156
           G  AV  A+  G   I    K  +  E  K+ G    I   D  ++ + E +K IT G G
Sbjct: 155 GSFAVQLAKRAGLRVITTCSKRNF--EYVKSLGADHVI---DYNDEDVCERIKEITGGRG 209

Query: 157 VDYCFECTG 165
           VD   +  G
Sbjct: 210 VDAVLDTVG 218

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 43.2 bits (103), Expect = 6e-05
 Identities = 43/133 (32%), Positives = 59/133 (44%), Gaps = 11/133 (8%)

Query: 37  STWSEYMVIDANYVVKVDPSIDPSDA--SFLSCGFTTGYGAAWKEA-KVEKGSSVAVLGL 93
             ++EY V+ A+ +VK+   I    A    L  G T  Y    +E   V+ G +V V   
Sbjct: 89  GAYAEYRVVPASRLVKLPDGISDETAAALLLQ-GLTAHYLL--RETYPVKPGDTVLVHAA 145

Query: 94  -GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGIT 152
            G VGL     A+  G A +IG   +  K E  +A G    IN  DE      E V+ IT
Sbjct: 146 AGGVGLLLTQWAKALG-ATVIGTVSSEEKAELARAAGADHVINYRDE---DFVERVREIT 201

Query: 153 HGMGVDYCFECTG 165
            G GVD  ++  G
Sbjct: 202 GGRGVDVVYDGVG 214

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 20/225 (8%)

Query: 39  WSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGL 98
           ++  MV+D  +VVK+   + P  A+ L C   T Y         + G    +LGLG VG 
Sbjct: 135 FASAMVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGH 194

Query: 99  GAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVD 158
             V  A+  G    +    +  ++E  +  G  D++   D     + E    +      D
Sbjct: 195 MGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDA--AEMQEAADSL------D 246

Query: 159 YCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIA--LACGGRTLKGTTFGG 216
           Y  +   V   L   L   K+  GK+I++GV      PL  +   L  G + + G+  G 
Sbjct: 247 YIIDTVPVFHPLEPYLSLLKL-DGKLILMGV---INTPLQFVTPMLMLGRKVITGSFIGS 302

Query: 217 IKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD 261
           +K   +   +L+ CK K       +   VK++ ++ A + L++ D
Sbjct: 303 MK---ETEEMLEFCKEKGL---TSMIEVVKMDYVNTAFERLEKND 341

Length = 357

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 9/129 (6%)

Query: 34  FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVL-G 92
            +   ++ ++ +DA  VVK+  S+   +A+ L   + T Y A    A+++KG SV +   
Sbjct: 58  LAPGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAA 117

Query: 93  LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGI- 151
            G VG  A+  A+  G A++     +  K+E    F        D   +        GI 
Sbjct: 118 AGGVGQAAIQLAQHLG-AEVFATVGSEEKRE----FLRELGGPVDHIFSSRDLSFADGIL 172

Query: 152 --THGMGVD 158
             T G GVD
Sbjct: 173 RATGGRGVD 181

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 42.0 bits (100), Expect = 1e-04
 Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 15/178 (8%)

Query: 41  EYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGT--VGL 98
           EY+V+ A  ++ V   +   +A+ L   F T +   ++   ++ G +V + G G   VG 
Sbjct: 96  EYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHG-GASGVGT 154

Query: 99  GAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVD 158
            A+  A+  GA ++I    +  K E  +A G    IN   E     +E VK  T G GVD
Sbjct: 155 AAIQLAKALGA-RVIATAGSEEKLEACRALGADVAINYRTE---DFAEEVKEATGGRGVD 210

Query: 159 YCFECTGVPSLLSEALETTKVGKGKVIVIGV--GVDAMVPLNVIALACGGR-TLKGTT 213
              +  G    L+  L       G++++IG+  G  A + L  +      R TL G+T
Sbjct: 211 VILDMVG-GDYLARNLRALAPD-GRLVLIGLLGGAKAELDLAPL---LRKRLTLTGST 263

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 45/174 (25%), Positives = 62/174 (35%), Gaps = 32/174 (18%)

Query: 26  RGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFL----SC---GFTTGYGAAWK 78
           RG K  H F      EY V D  Y+VKV PS+  +D   L    S           A  K
Sbjct: 114 RGIKGLHGFM----REYFVDDPEYLVKVPPSL--ADVGVLLEPLSVVEKAIEQAE-AVQK 166

Query: 79  EAKVEKGSSVAVLGLGTVGL-----GAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF 133
                      VLG G +GL       + G  ++   +    D    K +  +  G T +
Sbjct: 167 RLPTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR---RDPPDPKADIVEELGAT-Y 222

Query: 134 INPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI 187
           +N    P       V  +      D   E TGVP L  EAL    +    V+++
Sbjct: 223 VNSSKTP-------VAEVKLVGEFDLIIEATGVPPLAFEALP--ALAPNGVVIL 267

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 55/224 (24%), Positives = 96/224 (42%), Gaps = 18/224 (8%)

Query: 39  WSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGL 98
           +S+ +V+D ++V++   ++     + L C   T Y         E G  + V GLG +G 
Sbjct: 138 YSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGH 197

Query: 99  GAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDFINPDDEPNKSISELVKGITHGMGV 157
            AV   +  G  K+  I  +  K+++     G   F+   D P K     +K     M  
Sbjct: 198 VAVKIGKAFG-LKVTVISSSSNKEDEAINRLGADSFLVSTD-PEK-----MKAAIGTM-- 248

Query: 158 DYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI 217
           DY  +       L   L   KV  GK+I +G+  +  + L +  L  G + + G+  GGI
Sbjct: 249 DYIIDTVSAVHALGPLLGLLKV-NGKLITLGLP-EKPLELPIFPLVLGRKLVGGSDIGGI 306

Query: 218 KTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD 261
           K   +   +LD C          L   ++++EI+ A++ L + D
Sbjct: 307 KETQE---MLDFCAKHNITADIEL---IRMDEINTAMERLAKSD 344

Length = 360

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 40.4 bits (96), Expect = 5e-04
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 13/131 (9%)

Query: 34  FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVL-- 91
            +   ++  +V DA  VV +       +A+ +   F T Y A    A++  G S  VL  
Sbjct: 53  LAPGAFATRVVTDARLVVPIPDGWSFEEAATVPVVFLTAYYALVDLARLRPGES--VLIH 110

Query: 92  -GLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPD---DEPNKSISEL 147
              G VG  A+  AR  G A++     +P K++  +A G    I  D      + S ++ 
Sbjct: 111 AAAGGVGQAAIQLARHLG-AEVFATAGSPEKRDFLRALG----IPDDHIFSSRDLSFADE 165

Query: 148 VKGITHGMGVD 158
           +   T G GVD
Sbjct: 166 ILRATGGRGVD 176

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 53/233 (22%), Positives = 90/233 (38%), Gaps = 16/233 (6%)

Query: 39  WSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGL 98
           +SEY V+ A    ++  +I    A  +   FT             +     + G G VGL
Sbjct: 117 FSEYAVVPAKNAHRIPDAIADQYAVMVE-PFTIAANVT-GRTGPTEQDVALIYGAGPVGL 174

Query: 99  GAVDG-ARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGV 157
             V     ++    +I  D+   +    K  G    IN   EP     E  KGI   + +
Sbjct: 175 TIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALE-EKGIKPTLII 233

Query: 158 DYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI 217
           D        PS+L EA+ T      +++++G   +   P  ++     G+ L  + F   
Sbjct: 234 D----AACHPSILEEAV-TLASPAARIVLMGFSSE---PSEIVQQGITGKEL--SIFSSR 283

Query: 218 KTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLK--QPDCVKVLIT 268
              +  P ++D          +L+TH    + +  AI+L +  Q  C KVL+T
Sbjct: 284 LNANKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLT 336

Length = 339

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 13/94 (13%)

Query: 85  GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSI 144
           G  VAVLG G +GL       + G   ++ + ++  K    +  G  + + PD+  ++  
Sbjct: 156 GDKVAVLGDGKLGLLIAQVLALTG-PDVVLVGRHSEKLALARRLG-VETVLPDEAESE-- 211

Query: 145 SELVKGITHGMGVDYCFECTGVPSLLSEALETTK 178
                    G G D   E TG PS L  AL   +
Sbjct: 212 ---------GGGFDVVVEATGSPSGLELALRLVR 236

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 60/250 (24%), Positives = 96/250 (38%), Gaps = 46/250 (18%)

Query: 37  STWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTT---------GYGAAW-KEAKVEKGS 86
             + EY+V DA+   K+  +I   +A+ L  G  T         G      K +   KG 
Sbjct: 97  GAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGK 156

Query: 87  SVAVLGLGT-VGLGAVDGARMHGAAKIIGI--DKNPWKKEKGKAFGMTDFIN---PDDEP 140
            V + G  + VG  A+  A++ G  K+I     KN    +  K+ G     +   PD   
Sbjct: 157 PVLIWGGSSSVGTLAIQLAKLAG-YKVITTASPKN---FDLVKSLGADAVFDYHDPDVV- 211

Query: 141 NKSISELVKGITHGMGVDYCFECTGVPS---LLSEALETTKVGKGKVIVIGVGVDAMVPL 197
                E ++  T G  + Y  +C   P    L +EAL  +  GK  V ++ V  +     
Sbjct: 212 -----EDIRAATGG-KLRYALDCISTPESAQLCAEALGRSGGGKL-VSLLPVPEETEPRK 264

Query: 198 NVIALACGGRTLKGTTFGGIKTKSD--------LPTLLDKCKNKEFKLHQLLTHHVKLEE 249
            V         L  T FG I    +        LP LL++    + K H +      LE 
Sbjct: 265 GVKV----KFVLGYTVFGEIPEDREFGEVFWKYLPELLEE---GKLKPHPVRVVEGGLEG 317

Query: 250 IDKAIQLLKQ 259
           + + + LL++
Sbjct: 318 VQEGLDLLRK 327

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 37/159 (23%), Positives = 60/159 (37%), Gaps = 13/159 (8%)

Query: 35  SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFT--TGYGAAWKEAKVEKGSSVAVLG 92
             S W EY + D   + K+DPS  P  A     G    T Y       + + G +V V  
Sbjct: 99  GVSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSA 158

Query: 93  L-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF-IN-PDDEPNKSISELVK 149
             G VG      A++ G  +++GI     K +        D  I+   ++  +++ E   
Sbjct: 159 AAGAVGSVVGQIAKLKG-CRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEAC- 216

Query: 150 GITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIG 188
                 G+D  FE  G   +L   L    +   ++ V G
Sbjct: 217 ----PKGIDVYFENVGGE-VLDAVLPLLNL-FARIPVCG 249

Length = 340

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 51/225 (22%), Positives = 86/225 (38%), Gaps = 16/225 (7%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTV 96
             +EY+V   + + K    +   +A+ L     T   A     KV+ G  V + G  G V
Sbjct: 97  ALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGV 156

Query: 97  GLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG 156
           G  AV  A+  G A + G+  +    E  ++ G  + I+   E           +T G  
Sbjct: 157 GTFAVQIAKALG-AHVTGVC-STRNAELVRSLGADEVIDYTTED-------FVALTAGGE 207

Query: 157 V-DYCFECTG-VPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTF 214
             D  F+  G  P  L  A    K G G+ + +G G   ++ + ++     G   +   F
Sbjct: 208 KYDVIFDAVGNSPFSLYRASLALKPG-GRYVSVGGGPSGLLLVLLLLPLTLGGGGRRLKF 266

Query: 215 GGIK-TKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLK 258
              K    DL  L +  +  + K    +     LE+  +A + LK
Sbjct: 267 FLAKPNAEDLEQLAELVEEGKLKPV--IDSVYPLEDAPEAYRRLK 309

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 38.0 bits (89), Expect = 0.004
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 8/152 (5%)

Query: 39  WSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVL-GLGTVG 97
           ++E + + A+ V  +   +   +A+     + T Y A ++   +  G SV V    G VG
Sbjct: 93  YAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVG 152

Query: 98  LGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGV 157
           L A    +      ++G   +  K E  K  G+T  I   D   +   E VK I+   GV
Sbjct: 153 LAAGQLCKTVPNVTVVGT-ASASKHEALKENGVTHVI---DYRTQDYVEEVKKIS-PEGV 207

Query: 158 DYCFECTGVPSLLSEALETTKVGKGKVIVIGV 189
           D   +  G      ++ +  K   G+++V G 
Sbjct: 208 DIVLDALGGED-TRKSYDLLKPM-GRLVVYGA 237

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.98
PLN02514	357	cinnamyl-alcohol dehydrogenase	99.98
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.98
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.98
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.97
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.97
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.97
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.97
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.97
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.97
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.97
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.97
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.97
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.97
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.97
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.97
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.97
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.97
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.97
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.97
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.97
PRK10083	339	putative oxidoreductase; Provisional	99.97
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.97
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.97
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.97
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.97
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.97
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.97
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.96
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.96
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.96
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.96
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.96
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.96
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.96
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.96
PTZ00354	334	alcohol dehydrogenase; Provisional	99.96
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.96
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.96
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.96
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.96
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.96
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.96
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.96
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.96
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.96
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.96
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.96
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.96
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.95
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.95
PLN02702	364	L-idonate 5-dehydrogenase	99.95
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.95
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.95
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.95
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.95
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.95
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.95
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.95
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.95
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.95
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.95
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.95
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.95
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.94
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.94
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.94
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.94
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.94
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.94
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.94
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.94
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.94
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.94
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.94
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.94
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.94
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.94
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.93
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.93
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.93
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.93
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.93
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.93
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.92
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.92
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.92
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.92
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.91
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.91
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.91
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.83
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.59
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.51
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.41
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.82
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.72
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.53
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.44
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.41
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.41
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.38
PLN02494	477	adenosylhomocysteinase	98.3
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.27
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.13
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.04
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.02
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.0
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.95
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.95
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.94
PRK08324	681	short chain dehydrogenase; Validated	97.92
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.85
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.84
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.83
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.79
COG4122	219	Predicted O-methyltransferase [General function pr	97.77
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.72
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.71
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.71
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.7
TIGR00438	188	rrmJ cell division protein FtsJ.	97.66
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	97.65
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.63
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.62
PRK04148	134	hypothetical protein; Provisional	97.58
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	97.58
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.58
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.57
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.53
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	97.52
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.49
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.47
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.45
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.43
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.42
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.41
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	97.41
PRK07402	196	precorrin-6B methylase; Provisional	97.39
PRK14967	223	putative methyltransferase; Provisional	97.37
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.37
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.36
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.33
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.29
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	97.26
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	97.26
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	97.22
PRK05993	277	short chain dehydrogenase; Provisional	97.21
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.19
PRK11207	197	tellurite resistance protein TehB; Provisional	97.19
PRK08177	225	short chain dehydrogenase; Provisional	97.17
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	97.17
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.16
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.14
PRK05693	274	short chain dehydrogenase; Provisional	97.14
PLN02589	247	caffeoyl-CoA O-methyltransferase	97.11
PLN02476	278	O-methyltransferase	97.08
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.06
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.06
PRK12742	237	oxidoreductase; Provisional	97.05
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.03
PRK06182	273	short chain dehydrogenase; Validated	97.02
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.0
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.99
PRK07060	245	short chain dehydrogenase; Provisional	96.96
PRK08017	256	oxidoreductase; Provisional	96.94
PRK00811	283	spermidine synthase; Provisional	96.93
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	96.93
PLN03209	576	translocon at the inner envelope of chloroplast su	96.92
PRK06139	330	short chain dehydrogenase; Provisional	96.92
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.89
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	96.88
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	96.87
PRK07326	237	short chain dehydrogenase; Provisional	96.87
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.86
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	96.84
PRK04266	226	fibrillarin; Provisional	96.83
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.82
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.82
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	96.81
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.79
PLN03075	296	nicotianamine synthase; Provisional	96.79
PRK04457	262	spermidine synthase; Provisional	96.79
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.78
PRK06057	255	short chain dehydrogenase; Provisional	96.78
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.77
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	96.75
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.73
PRK08265	261	short chain dehydrogenase; Provisional	96.73
PRK07806	248	short chain dehydrogenase; Provisional	96.72
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	96.72
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	96.72
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.71
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	96.7
PRK07109	334	short chain dehydrogenase; Provisional	96.69
PRK06949	258	short chain dehydrogenase; Provisional	96.69
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.68
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.68
PLN02366	308	spermidine synthase	96.67
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.67
PRK00536	262	speE spermidine synthase; Provisional	96.66
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	96.66
PRK07825	273	short chain dehydrogenase; Provisional	96.66
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.66
PLN02244	340	tocopherol O-methyltransferase	96.65
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	96.64
PRK06841	255	short chain dehydrogenase; Provisional	96.64
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.63
PRK08618	325	ornithine cyclodeaminase; Validated	96.62
PRK06953	222	short chain dehydrogenase; Provisional	96.6
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.6
PRK08339	263	short chain dehydrogenase; Provisional	96.6
PRK07831	262	short chain dehydrogenase; Provisional	96.57
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	96.57
PLN02780	320	ketoreductase/ oxidoreductase	96.56
PRK08317	241	hypothetical protein; Provisional	96.56
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.54
PRK07340	304	ornithine cyclodeaminase; Validated	96.54
PRK05872	296	short chain dehydrogenase; Provisional	96.54
PRK06196	315	oxidoreductase; Provisional	96.54
PRK12829	264	short chain dehydrogenase; Provisional	96.53
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.53
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.53
PRK07574	385	formate dehydrogenase; Provisional	96.53
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.53
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.52
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	96.51
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.51
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.49
PLN00203	519	glutamyl-tRNA reductase	96.49
PRK06500	249	short chain dehydrogenase; Provisional	96.49
PRK07904	253	short chain dehydrogenase; Provisional	96.49
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.48
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	96.48
PRK05866	293	short chain dehydrogenase; Provisional	96.47
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.46
PRK07814	263	short chain dehydrogenase; Provisional	96.45
PRK12828	239	short chain dehydrogenase; Provisional	96.45
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.42
PRK09072	263	short chain dehydrogenase; Provisional	96.42
COG2910	211	Putative NADH-flavin reductase [General function p	96.41
PRK06180	277	short chain dehydrogenase; Provisional	96.41
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.4
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.37
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	96.37
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.36
PRK05867	253	short chain dehydrogenase; Provisional	96.36
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	96.34
PLN02233	261	ubiquinone biosynthesis methyltransferase	96.33
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	96.32
PRK09291	257	short chain dehydrogenase; Provisional	96.31
CHL00194	317	ycf39 Ycf39; Provisional	96.3
PRK01581	374	speE spermidine synthase; Validated	96.29
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	96.29
PRK07677	252	short chain dehydrogenase; Provisional	96.29
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.28
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.28
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.28
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.28
PRK08300	302	acetaldehyde dehydrogenase; Validated	96.28
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.27
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	96.27
PRK06849	389	hypothetical protein; Provisional	96.27
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.26
PRK08267	260	short chain dehydrogenase; Provisional	96.26
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.25
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	96.25
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	96.25
PRK07478	254	short chain dehydrogenase; Provisional	96.24
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	96.24
PLN03139	386	formate dehydrogenase; Provisional	96.23
PRK12939	250	short chain dehydrogenase; Provisional	96.22
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.21
PRK05884	223	short chain dehydrogenase; Provisional	96.21
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	96.21
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.21
PRK07024	257	short chain dehydrogenase; Provisional	96.2
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.2
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	96.18
PRK13243	333	glyoxylate reductase; Reviewed	96.18
PRK06128	300	oxidoreductase; Provisional	96.18
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.18
PRK08328	231	hypothetical protein; Provisional	96.17
PRK08862	227	short chain dehydrogenase; Provisional	96.16
PRK06198	260	short chain dehydrogenase; Provisional	96.16
PRK07062	265	short chain dehydrogenase; Provisional	96.15
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.15
PRK10258	251	biotin biosynthesis protein BioC; Provisional	96.14
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	96.14
PRK08264	238	short chain dehydrogenase; Validated	96.12
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.11
PRK08703	239	short chain dehydrogenase; Provisional	96.1
PTZ00146	293	fibrillarin; Provisional	96.1
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.09
PRK07576	264	short chain dehydrogenase; Provisional	96.09
PLN02823	336	spermine synthase	96.09
PRK08340	259	glucose-1-dehydrogenase; Provisional	96.08
TIGR00452	314	methyltransferase, putative. Known examples to dat	96.07
PRK06125	259	short chain dehydrogenase; Provisional	96.07
PLN02490	340	MPBQ/MSBQ methyltransferase	96.06
PRK07454	241	short chain dehydrogenase; Provisional	96.06
PRK06483	236	dihydromonapterin reductase; Provisional	96.06
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.06
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.05
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	96.04
PRK07774	250	short chain dehydrogenase; Provisional	96.03
PRK08213	259	gluconate 5-dehydrogenase; Provisional	96.02
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.02
PRK07063	260	short chain dehydrogenase; Provisional	96.0
PRK05717	255	oxidoreductase; Validated	95.99
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	95.98
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	95.98
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	95.98
PRK06181	263	short chain dehydrogenase; Provisional	95.97
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.97
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	95.96
PRK06194	287	hypothetical protein; Provisional	95.96
PRK05875	276	short chain dehydrogenase; Provisional	95.96
PRK06172	253	short chain dehydrogenase; Provisional	95.96
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.96
PRK06138	252	short chain dehydrogenase; Provisional	95.96
PRK12367	245	short chain dehydrogenase; Provisional	95.95
PRK07577	234	short chain dehydrogenase; Provisional	95.95
PRK07035	252	short chain dehydrogenase; Provisional	95.95
PRK05854	313	short chain dehydrogenase; Provisional	95.94
PRK06101	240	short chain dehydrogenase; Provisional	95.92
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	95.92
PRK14903	431	16S rRNA methyltransferase B; Provisional	95.91
PRK08643	256	acetoin reductase; Validated	95.91
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	95.91
PRK06179	270	short chain dehydrogenase; Provisional	95.9
PRK07890	258	short chain dehydrogenase; Provisional	95.89
PRK08277	278	D-mannonate oxidoreductase; Provisional	95.89
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	95.89
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	95.89
PRK08219	227	short chain dehydrogenase; Provisional	95.89
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.88
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.88
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	95.87
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.85
PRK06484	520	short chain dehydrogenase; Validated	95.84
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	95.83
PRK08628	258	short chain dehydrogenase; Provisional	95.83
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.82
PRK07417	279	arogenate dehydrogenase; Reviewed	95.81
PRK11579	346	putative oxidoreductase; Provisional	95.8
PRK06914	280	short chain dehydrogenase; Provisional	95.79
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	95.78
PRK12335	287	tellurite resistance protein TehB; Provisional	95.78
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.78
PRK07067	257	sorbitol dehydrogenase; Provisional	95.77
PRK06484	520	short chain dehydrogenase; Validated	95.76
PRK06197	306	short chain dehydrogenase; Provisional	95.76
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.75
PRK05876	275	short chain dehydrogenase; Provisional	95.75
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	95.75
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	95.75
PRK06398	258	aldose dehydrogenase; Validated	95.75
PRK06114	254	short chain dehydrogenase; Provisional	95.74
PRK09242	257	tropinone reductase; Provisional	95.74
PRK06482	276	short chain dehydrogenase; Provisional	95.73
PRK10538	248	malonic semialdehyde reductase; Provisional	95.73
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.72
PRK14901	434	16S rRNA methyltransferase B; Provisional	95.71
PLN02336	475	phosphoethanolamine N-methyltransferase	95.71
PRK14904	445	16S rRNA methyltransferase B; Provisional	95.71
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.71
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.7
PRK08263	275	short chain dehydrogenase; Provisional	95.69
PLN02928	347	oxidoreductase family protein	95.69
PRK08085	254	gluconate 5-dehydrogenase; Provisional	95.68
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	95.68
PRK07453	322	protochlorophyllide oxidoreductase; Validated	95.67
PRK09186	256	flagellin modification protein A; Provisional	95.67
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	95.66
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.65
PRK08589	272	short chain dehydrogenase; Validated	95.65
PRK08251	248	short chain dehydrogenase; Provisional	95.64
PRK13255	218	thiopurine S-methyltransferase; Reviewed	95.64
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.64
PRK07832	272	short chain dehydrogenase; Provisional	95.64
PRK14902	444	16S rRNA methyltransferase B; Provisional	95.63
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	95.63
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.63
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	95.62
PRK06940	275	short chain dehydrogenase; Provisional	95.62
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	95.62
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	95.62
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	95.61
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.61
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	95.61
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.6
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	95.6
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	95.59
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.57
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	95.56
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.56
PRK10901	427	16S rRNA methyltransferase B; Provisional	95.55
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.54
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	95.54
PRK13403	335	ketol-acid reductoisomerase; Provisional	95.53
PRK08278	273	short chain dehydrogenase; Provisional	95.53
PRK07856	252	short chain dehydrogenase; Provisional	95.53
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	95.52
PRK06141	314	ornithine cyclodeaminase; Validated	95.51
PLN02253	280	xanthoxin dehydrogenase	95.51
PRK07074	257	short chain dehydrogenase; Provisional	95.51
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.49
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.48
PRK10669	558	putative cation:proton antiport protein; Provision	95.47
PRK03612	521	spermidine synthase; Provisional	95.47
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.47
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.45
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	95.44
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.44
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.44
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	95.42
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.41
PRK14968	188	putative methyltransferase; Provisional	95.41
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.4
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	95.39
PRK06720	169	hypothetical protein; Provisional	95.39
PRK07102	243	short chain dehydrogenase; Provisional	95.39
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	95.39
PRK08226	263	short chain dehydrogenase; Provisional	95.37
COG0673	342	MviM Predicted dehydrogenases and related proteins	95.36
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	95.36
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.36
PRK12480	330	D-lactate dehydrogenase; Provisional	95.35
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	95.33
PRK07411	390	hypothetical protein; Validated	95.33
PRK08223	287	hypothetical protein; Validated	95.33
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	95.31
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	95.31
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.31
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	95.29
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	95.29
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.28
PRK06436	303	glycerate dehydrogenase; Provisional	95.27
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.27
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.27
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.27
PLN00016	378	RNA-binding protein; Provisional	95.26
PRK07985	294	oxidoreductase; Provisional	95.25
PRK12747	252	short chain dehydrogenase; Provisional	95.25
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.24
PRK07097	265	gluconate 5-dehydrogenase; Provisional	95.24
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.23
KOG1252	362	consensus Cystathionine beta-synthase and related	95.22
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	95.22
PRK07791	286	short chain dehydrogenase; Provisional	95.22
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	95.21
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.21
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	95.19
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.19
PRK05650	270	short chain dehydrogenase; Provisional	95.17
PRK10206	344	putative oxidoreductase; Provisional	95.16
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	95.16
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.16
KOG3010	261	consensus Methyltransferase [General function pred	95.15
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.14
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	95.13
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	95.13
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	95.12
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	95.12

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=4.4e-41  Score=271.46  Aligned_cols=263  Identities=40%  Similarity=0.713  Sum_probs=242.8

Q ss_pred             CCCCCCCCcccc-cccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHh
Q 024295            1 MTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKE   79 (269)
Q Consensus         1 ~~~~c~~~~~~~-~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~   79 (269)
                      ++++|....-+- .|..-+|..++.-+|..++.+...++|+||.++++..+++++++.+++.++++.|...|.+.+..+.
T Consensus       101 k~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~p~~~a~llGCgV~TG~Gav~nt  180 (366)
T COG1062         101 KPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNT  180 (366)
T ss_pred             CcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECCCCCCccceEEEeeeeccChHHhhhc
Confidence            367787666555 6777788888876688888888888999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCc-cHHHHHHhhhCCCCcc
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNK-SISELVKGITHGMGVD  158 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~-~~~~~i~~~~~~~~~d  158 (269)
                      +++++|++|.|.|.|++|++++|-|+..|+++++++|.+++|+++++++|+++++|.++   . +..+.+++++++ ++|
T Consensus       181 a~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~---~~~vv~~i~~~T~g-G~d  256 (366)
T COG1062         181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKE---VDDVVEAIVELTDG-GAD  256 (366)
T ss_pred             ccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchh---hhhHHHHHHHhcCC-CCC
Confidence            99999999999999999999999999999999999999999999999999999999987   5 699999999998 999


Q ss_pred             EEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCC
Q 024295          159 YCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKL  237 (269)
Q Consensus       159 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  237 (269)
                      ++|||+|+...++.++.++.++ |+.+.+|.... ...++++..+. .+++++|++++....+.+++.+++++.+|++.+
T Consensus       257 ~~~e~~G~~~~~~~al~~~~~~-G~~v~iGv~~~~~~i~~~~~~lv-~gr~~~Gs~~G~~~p~~diP~lv~~y~~Gkl~~  334 (366)
T COG1062         257 YAFECVGNVEVMRQALEATHRG-GTSVIIGVAGAGQEISTRPFQLV-TGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPL  334 (366)
T ss_pred             EEEEccCCHHHHHHHHHHHhcC-CeEEEEecCCCCceeecChHHee-ccceEEEEeecCCccccchhHHHHHHHcCCCch
Confidence            9999999999999999999995 99999998875 56667777777 559999999999988999999999999999999


Q ss_pred             CcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       238 ~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      ++++++.++|++++|||+.|.+++.+|.||+|
T Consensus       335 d~lvt~~~~Le~INeaf~~m~~G~~IR~Vi~~  366 (366)
T COG1062         335 DRLVTHTIPLEDINEAFDLMHEGKSIRSVIRF  366 (366)
T ss_pred             hHHhhccccHHHHHHHHHHHhCCceeeEEecC
Confidence            99999999999999999999999999999875

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.4e-40  Score=263.28  Aligned_cols=265  Identities=46%  Similarity=0.789  Sum_probs=244.5

Q ss_pred             CCCCCCCcccc--cccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHh
Q 024295            2 TNLCLKYPIAL--NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKE   79 (269)
Q Consensus         2 ~~~c~~~~~~~--~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~   79 (269)
                      .|+|.+.....  ....-++.++|.-.|+.++.+..-.+|+||.+++...++++++..+++.++++.|..+|+|.|..+.
T Consensus       108 tNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~  187 (375)
T KOG0022|consen  108 TNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNT  187 (375)
T ss_pred             CChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecCCCCChhheeEeeccccccchhhhhh
Confidence            47888888766  3334488889876699999887778999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      +.+++|+++.|.|.|++|+++++-+|+.|+++++++|.+++|.+.++++|+++++|+.+ ......+.+++.|++ |+|+
T Consensus       188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d-~~~~i~evi~EmTdg-GvDy  265 (375)
T KOG0022|consen  188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKD-LKKPIQEVIIEMTDG-GVDY  265 (375)
T ss_pred             cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhh-ccccHHHHHHHHhcC-CceE
Confidence            99999999999999999999999999999999999999999999999999999999874 224688889999998 9999


Q ss_pred             EEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCC
Q 024295          160 CFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLH  238 (269)
Q Consensus       160 v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  238 (269)
                      .|||+|+...+++++.+.+.|+|+-+.+|.... ...+++++.++ +++++.|+.++.++.+.+++.+.+.+.++++.++
T Consensus       266 sfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~-~GR~~~Gs~FGG~K~~~~iP~lV~~y~~~~l~ld  344 (375)
T KOG0022|consen  266 SFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLV-TGRTWKGSAFGGFKSKSDIPKLVKDYMKKKLNLD  344 (375)
T ss_pred             EEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhc-cccEEEEEecccccchhhhhHHHHHHHhCccchh
Confidence            999999999999999999998899999998876 77888888888 8999999999999999999999999999999999


Q ss_pred             cceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          239 QLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       239 ~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      .+++|.+|++++++||+.|.+++.+|.||.+
T Consensus       345 ~~ITh~l~f~~In~AF~ll~~GksiR~vl~~  375 (375)
T KOG0022|consen  345 EFITHELPFEEINKAFDLLHEGKSIRCVLWM  375 (375)
T ss_pred             hhhhcccCHHHHHHHHHHHhCCceEEEEEeC
Confidence            9999999999999999999999999999875

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=3.3e-40  Score=271.60  Aligned_cols=236  Identities=27%  Similarity=0.391  Sum_probs=208.4

Q ss_pred             cCCceeeeecCeEE-------eeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEE
Q 024295           17 LDSTSRMSVRGQKL-------YHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVA   89 (269)
Q Consensus        17 g~~~~~~~~~Gd~v-------~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vl   89 (269)
                      +|+.|.+|..|...       .+++.+|+||||+++++++++++|++++++.||.+.|+..|+|++|. ..+++||++|+
T Consensus        93 ~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y~alk-~~~~~pG~~V~  171 (339)
T COG1064          93 SCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALK-KANVKPGKWVA  171 (339)
T ss_pred             CCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEeeehh-hcCCCCCCEEE
Confidence            46666666666442       35666799999999999999999999999999999999999999975 59999999999


Q ss_pred             EEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhH
Q 024295           90 VLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  169 (269)
Q Consensus        90 I~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  169 (269)
                      |+|.|++|.+++|+|+.+|+ +|++++++++|++.++++|++++++.++   ++..+.+++     .+|+++|+++ +..
T Consensus       172 I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~~i~~~~---~~~~~~~~~-----~~d~ii~tv~-~~~  241 (339)
T COG1064         172 VVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVINSSD---SDALEAVKE-----IADAIIDTVG-PAT  241 (339)
T ss_pred             EECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcEEEEcCC---chhhHHhHh-----hCcEEEECCC-hhh
Confidence            99999999999999999998 9999999999999999999999999776   777777765     3999999999 779


Q ss_pred             HHHHHHHcccCCcEEEEEccCC-CccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehh
Q 024295          170 LSEALETTKVGKGKVIVIGVGV-DAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLE  248 (269)
Q Consensus       170 ~~~~~~~l~~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  248 (269)
                      ++.+++.++++ |+++++|.+. ....+++.+.++.+++++.|+..++   +.++++++++..+|++++.  +.+.++++
T Consensus       242 ~~~~l~~l~~~-G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~---~~d~~e~l~f~~~g~Ikp~--i~e~~~l~  315 (339)
T COG1064         242 LEPSLKALRRG-GTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGT---RADLEEALDFAAEGKIKPE--ILETIPLD  315 (339)
T ss_pred             HHHHHHHHhcC-CEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCC---HHHHHHHHHHHHhCCceee--EEeeECHH
Confidence            99999999996 9999999984 3445677888888999999998876   4789999999999997765  54689999


Q ss_pred             hHHHHHHHhcCCCe-eeEEeeC
Q 024295          249 EIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       249 ~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++||+.|++++. +|+||++
T Consensus       316 ~in~A~~~m~~g~v~gR~Vi~~  337 (339)
T COG1064         316 EINEAYERMEKGKVRGRAVIDM  337 (339)
T ss_pred             HHHHHHHHHHcCCeeeEEEecC
Confidence            99999999999887 6999875

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=1.7e-38  Score=267.01  Aligned_cols=247  Identities=26%  Similarity=0.366  Sum_probs=210.7

Q ss_pred             ccccCCceeeeecCeEEeeee---ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEE
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAV   90 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI   90 (269)
                      -.+|+++..+++ ||+|+...   .+|+||||+.+|++.++++|+++++++||++++.++|||+++....+++++++|||
T Consensus        70 ~avG~~V~~~~~-GdrV~~~~~~~~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV  148 (326)
T COG0604          70 VAVGSGVTGFKV-GDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLV  148 (326)
T ss_pred             EEeCCCCCCcCC-CCEEEEccCCCCCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            346899999988 99999886   67999999999999999999999999999999999999999999999999999999


Q ss_pred             Ec-CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhH
Q 024295           91 LG-LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  169 (269)
Q Consensus        91 ~G-~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  169 (269)
                      +| +|++|.+++|+||.+|+ .++++..++++.+.++++|+++++++++   .++.+.+++++++.++|+|||++|+. .
T Consensus       149 ~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~---~~~~~~v~~~t~g~gvDvv~D~vG~~-~  223 (326)
T COG0604         149 HGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVINYRE---EDFVEQVRELTGGKGVDVVLDTVGGD-T  223 (326)
T ss_pred             ecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCc---ccHHHHHHHHcCCCCceEEEECCCHH-H
Confidence            98 59999999999999998 6777766778888999999999999988   88999999999998999999999987 7


Q ss_pred             HHHHHHHcccCCcEEEEEccCC-CccccchhHhhhhCCceEEeeeccCC---CCCCcHHHHHHHHHCCCCCCCcceeEEe
Q 024295          170 LSEALETTKVGKGKVIVIGVGV-DAMVPLNVIALACGGRTLKGTTFGGI---KTKSDLPTLLDKCKNKEFKLHQLLTHHV  245 (269)
Q Consensus       170 ~~~~~~~l~~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~~  245 (269)
                      +..+++.++++ |+++.+|... ....+++...++.+.+...+......   ...+.+.++++++.+|++++  .++.+|
T Consensus       224 ~~~~l~~l~~~-G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~--~i~~~~  300 (326)
T COG0604         224 FAASLAALAPG-GRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKLKP--VIDRVY  300 (326)
T ss_pred             HHHHHHHhccC-CEEEEEecCCCCCccccCHHHHhhccEEEEEecceecchHHHHHHHHHHHHHHHcCCCcc--eeccEe
Confidence            78899999996 9999999887 35555666777778888888765533   11245777999999999654  477899


Q ss_pred             ehhhHHHHHH--HhcCCCeeeEEeeC
Q 024295          246 KLEEIDKAIQ--LLKQPDCVKVLITI  269 (269)
Q Consensus       246 ~~~~~~~a~~--~~~~~~~~k~vl~~  269 (269)
                      |+++..++..  .+.....+|+||++
T Consensus       301 ~l~e~~~a~a~~~~~~~~~GKvvl~~  326 (326)
T COG0604         301 PLAEAPAAAAHLLLERRTTGKVVLKV  326 (326)
T ss_pred             chhhhHHHHHHHHcccCCcceEEEeC
Confidence            9999655554  44412347999975

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.1e-37  Score=249.67  Aligned_cols=254  Identities=25%  Similarity=0.400  Sum_probs=217.3

Q ss_pred             CCcccccccccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccCceEEcCCCCC
Q 024295            7 KYPIALNGLMLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVKVDPSID   58 (269)
Q Consensus         7 ~~~~~~~~~vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~~~~vp~~~~   58 (269)
                      |....++-++|+++..+++ ||||..-.                            .+|++++|++.++++++|+|+++|
T Consensus        67 HEssGiV~evG~~Vk~LkV-GDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs  145 (354)
T KOG0024|consen   67 HESSGIVEEVGDEVKHLKV-GDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVS  145 (354)
T ss_pred             cccccchhhhccccccccc-CCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCc
Confidence            3344446778999999999 99985110                            139999999999999999999999


Q ss_pred             cccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCC
Q 024295           59 PSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDD  138 (269)
Q Consensus        59 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~  138 (269)
                      ++++|++. ++++++||. +++.+++|++|||+|+|++|+.+...||.+|+++|+.++..++|++.++++|++.+.+...
T Consensus       146 ~eeGAl~e-PLsV~~HAc-r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~  223 (354)
T KOG0024|consen  146 FEEGALIE-PLSVGVHAC-RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSH  223 (354)
T ss_pred             hhhccccc-chhhhhhhh-hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccc
Confidence            99999997 899999995 7899999999999999999999999999999999999999999999999999998776654


Q ss_pred             CC-CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC
Q 024295          139 EP-NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI  217 (269)
Q Consensus       139 ~~-~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (269)
                      .. ++.+.+.+.+..++..+|+.|||+|....++.++..++.+ |++++.|... ...+|+......|++.+.|+.   .
T Consensus       224 ~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~g-Gt~vlvg~g~-~~~~fpi~~v~~kE~~~~g~f---r  298 (354)
T KOG0024|consen  224 KSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSG-GTVVLVGMGA-EEIQFPIIDVALKEVDLRGSF---R  298 (354)
T ss_pred             cccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccC-CEEEEeccCC-CccccChhhhhhheeeeeeee---e
Confidence            11 3445555555555456999999999988999999999996 9999998766 577888888888999999985   1


Q ss_pred             CCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCC--eeeEEee
Q 024295          218 KTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD--CVKVLIT  268 (269)
Q Consensus       218 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~k~vl~  268 (269)
                      +...+++.+++++.+|++++++++++.|++++..+||+.+..++  .+|+++.
T Consensus       299 y~~~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~  351 (354)
T KOG0024|consen  299 YCNGDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVIIT  351 (354)
T ss_pred             eccccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHhCcCCceEEEEe
Confidence            22358999999999999999999999999999999999887765  4699886

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=4.3e-37  Score=265.14  Aligned_cols=226  Identities=35%  Similarity=0.547  Sum_probs=202.0

Q ss_pred             CcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295           37 STWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID  116 (269)
Q Consensus        37 g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~  116 (269)
                      |+|+||+.++++.++++|+++++++++++++++++||+++...++++++++|||+|+|++|++++|+||..|+++|++++
T Consensus       144 G~~aey~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~  223 (371)
T cd08281         144 SAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVD  223 (371)
T ss_pred             ccceeeEEecccceEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEc
Confidence            68999999999999999999999999999999999999988888999999999999999999999999999996799999


Q ss_pred             CCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccc
Q 024295          117 KNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMV  195 (269)
Q Consensus       117 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~  195 (269)
                      ++++|++.++++|+++++++.+   .++.+.+++.+++ ++|++|||+|.+..+..++++++++ |+++.+|.... ...
T Consensus       224 ~~~~r~~~a~~~Ga~~~i~~~~---~~~~~~i~~~~~~-g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~  298 (371)
T cd08281         224 LNEDKLALARELGATATVNAGD---PNAVEQVRELTGG-GVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPEARL  298 (371)
T ss_pred             CCHHHHHHHHHcCCceEeCCCc---hhHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHHHhcC-CEEEEEccCCCCcee
Confidence            9999999999999999999876   7888889888877 8999999999877889999999996 99999997643 345


Q ss_pred             cchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEe
Q 024295          196 PLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI  267 (269)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl  267 (269)
                      +++...++.+++++.+++...+..++++.++++++.+|+++++++++++|+++++++||+.+.+++..|.||
T Consensus       299 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi  370 (371)
T cd08281         299 SVPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVI  370 (371)
T ss_pred             eecHHHHhhcCCEEEEEecCCCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeee
Confidence            677777888999999988765444567899999999999998888999999999999999999887764443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=1.6e-36  Score=260.43  Aligned_cols=229  Identities=29%  Similarity=0.540  Sum_probs=203.6

Q ss_pred             cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295           36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI  115 (269)
Q Consensus        36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~  115 (269)
                      .|+|+||+.+++.+++++|+++++++++++++.+++||+++...+.++++++|||+|+|++|++++|+|+..|+++|+++
T Consensus       128 ~G~~aey~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~  207 (358)
T TIGR03451       128 IGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAV  207 (358)
T ss_pred             cccccceEEEehhheEECCCCCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            48999999999999999999999999999999999999988888899999999999999999999999999999669999


Q ss_pred             cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-cc
Q 024295          116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AM  194 (269)
Q Consensus       116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~  194 (269)
                      ++++++++.++++|+++++++.+   .++.+.+++.+++.++|++||++|++..+..++++++++ |+++.+|.... ..
T Consensus       208 ~~~~~~~~~~~~~Ga~~~i~~~~---~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~-G~iv~~G~~~~~~~  283 (358)
T TIGR03451       208 DIDDRKLEWAREFGATHTVNSSG---TDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLA-GTVVLVGVPTPDMT  283 (358)
T ss_pred             cCCHHHHHHHHHcCCceEEcCCC---cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCCCce
Confidence            99999999999999999999876   788888888888778999999999877889999999996 99999997653 23


Q ss_pred             ccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEee
Q 024295          195 VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT  268 (269)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~  268 (269)
                      .+++...++.++.++.+++.+....++.+.++++++.+|+++++++++++||++++++||+.+++++..|+++.
T Consensus       284 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~  357 (358)
T TIGR03451       284 LELPLLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVLRSVVE  357 (358)
T ss_pred             eeccHHHHhhcCCEEEEeecCCCCcHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcceeEEe
Confidence            55666677779999998865543345678999999999999888889999999999999999988877788875

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=7.6e-37  Score=236.42  Aligned_cols=247  Identities=22%  Similarity=0.261  Sum_probs=216.4

Q ss_pred             cccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG   92 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G   92 (269)
                      +-.+|+|++++.+ ||+|.-++..|.|||+..+|...++++|+.+++++||++...++|||..+.+...+++|++||++.
T Consensus        76 VvAvG~gvtdrkv-GDrVayl~~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvha  154 (336)
T KOG1197|consen   76 VVAVGEGVTDRKV-GDRVAYLNPFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHA  154 (336)
T ss_pred             EEEecCCcccccc-ccEEEEeccchhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEe
Confidence            3456999999999 999988888899999999999999999999999999999999999999999999999999999996


Q ss_pred             -CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHH
Q 024295           93 -LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS  171 (269)
Q Consensus        93 -~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~  171 (269)
                       +|++|+++.|+++..|+ .++++..+.+|++.+++.|+.|.++++.   +|+.+++.+++++.|+|+++|.+|.. .+.
T Consensus       155 AAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~akenG~~h~I~y~~---eD~v~~V~kiTngKGVd~vyDsvG~d-t~~  229 (336)
T KOG1197|consen  155 AAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKENGAEHPIDYST---EDYVDEVKKITNGKGVDAVYDSVGKD-TFA  229 (336)
T ss_pred             ccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhcCCcceeeccc---hhHHHHHHhccCCCCceeeeccccch-hhH
Confidence             59999999999999999 9999999999999999999999999998   99999999999888999999999987 889


Q ss_pred             HHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC-CC----cHHHHHHHHHCCCCCCCcceeEEee
Q 024295          172 EALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT-KS----DLPTLLDKCKNKEFKLHQLLTHHVK  246 (269)
Q Consensus       172 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~l~~~g~~~~~~~~~~~~~  246 (269)
                      ..+.+|++. |++|.+|..++...+++...+..+++++..-.+-.|.. +.    ...+++.++.+|.++++  |.|+||
T Consensus       230 ~sl~~Lk~~-G~mVSfG~asgl~~p~~l~~ls~k~l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~--I~~~yp  306 (336)
T KOG1197|consen  230 KSLAALKPM-GKMVSFGNASGLIDPIPLNQLSPKALQLVRPSLLGYIDGEVELVSYVARLFALVNSGHLKIH--IDHVYP  306 (336)
T ss_pred             HHHHHhccC-ceEEEeccccCCCCCeehhhcChhhhhhccHhhhcccCCHHHHHHHHHHHHHHhhcCcccee--eeeecc
Confidence            999999995 99999998887555555556666666665433333322 22    24468888899997766  999999


Q ss_pred             hhhHHHHHHHhcCCCe-eeEEee
Q 024295          247 LEEIDKAIQLLKQPDC-VKVLIT  268 (269)
Q Consensus       247 ~~~~~~a~~~~~~~~~-~k~vl~  268 (269)
                      ++++.+|++++++++. +|+++-
T Consensus       307 ls~vadA~~diesrktvGkvlLl  329 (336)
T KOG1197|consen  307 LSKVADAHADIESRKTVGKVLLL  329 (336)
T ss_pred             hHHHHHHHHHHHhhhccceEEEe
Confidence            9999999999999887 698874

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=1e-35  Score=257.37  Aligned_cols=231  Identities=45%  Similarity=0.812  Sum_probs=199.4

Q ss_pred             cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295           36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI  115 (269)
Q Consensus        36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~  115 (269)
                      +|+|+||++++.+.++++|+++++++++++++++.|||+++...++++++++|||+|+|++|++++|+|+.+|+++|+++
T Consensus       150 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~  229 (381)
T PLN02740        150 TSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGV  229 (381)
T ss_pred             CccceeEEEEehHHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEE
Confidence            48999999999999999999999999999999999999988888999999999999999999999999999999679999


Q ss_pred             cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-cc
Q 024295          116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AM  194 (269)
Q Consensus       116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~  194 (269)
                      ++++++.+.++++|+++++++.+ ...++.+.+++.+++ ++|++||++|.+..+..+++++++++|+++.+|.... ..
T Consensus       230 ~~~~~r~~~a~~~Ga~~~i~~~~-~~~~~~~~v~~~~~~-g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~  307 (381)
T PLN02740        230 DINPEKFEKGKEMGITDFINPKD-SDKPVHERIREMTGG-GVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKM  307 (381)
T ss_pred             cCChHHHHHHHHcCCcEEEeccc-ccchHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCce
Confidence            99999999999999999998764 112477888888877 8999999999877889999999882299999997653 22


Q ss_pred             ccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          195 VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      .+++...++ +++++.|+..+.+....++.++++++.++++++.++++++|+++++++||+.+.+++.+|++|+.
T Consensus       308 ~~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~~k~~~~~  381 (381)
T PLN02740        308 LPLHPMELF-DGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKALRCLLHL  381 (381)
T ss_pred             ecccHHHHh-cCCeEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCceeEEEeC
Confidence            344444344 78999998776554445789999999999998888899999999999999999888778999864

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=1.3e-35  Score=255.56  Aligned_cols=230  Identities=40%  Similarity=0.710  Sum_probs=195.9

Q ss_pred             CcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295           37 STWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID  116 (269)
Q Consensus        37 g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~  116 (269)
                      |+|+||+++|++.++++|+++++++++++++++.+||+++...++++++++|||+|+|++|++++|+||.+|+++|++++
T Consensus       138 G~~aey~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~  217 (368)
T TIGR02818       138 STFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAID  217 (368)
T ss_pred             ccceeeEEechhheEECCCCCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence            68999999999999999999999999999999999999988888999999999999999999999999999997799999


Q ss_pred             CCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccc
Q 024295          117 KNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMV  195 (269)
Q Consensus       117 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~  195 (269)
                      +++++++.++++|+++++++.+ .+.++.+.+++++++ ++|++||++|++..+..+++++++++|+++.+|.... ...
T Consensus       218 ~~~~~~~~a~~~Ga~~~i~~~~-~~~~~~~~v~~~~~~-g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~  295 (368)
T TIGR02818       218 INPAKFELAKKLGATDCVNPND-YDKPIQEVIVEITDG-GVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEI  295 (368)
T ss_pred             CCHHHHHHHHHhCCCeEEcccc-cchhHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcc
Confidence            9999999999999999998763 114566778888877 8999999999877889999999872399999997642 234


Q ss_pred             cchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          196 PLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      +++...+. ++..+.++..+....+.++.++++++.+++++++++++++||++++++||+.+.+++.+|++|+|
T Consensus       296 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~k~~v~~  368 (368)
T TIGR02818       296 STRPFQLV-TGRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKSIRTVIHY  368 (368)
T ss_pred             cccHHHHh-ccceEEEeeccCCCcHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCceeEEeeC
Confidence            44444444 45567777654433345789999999999998888999999999999999999887778999975

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=1.3e-35  Score=253.19  Aligned_cols=244  Identities=27%  Similarity=0.432  Sum_probs=210.7

Q ss_pred             ccccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccCceEEcCCCCCccccccc
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFL   65 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~   65 (269)
                      -.+|+++..+.+ ||+|+...                            .+|+|+||+.++++.++++|+++++++++++
T Consensus        67 ~~vG~~v~~~~~-Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l  145 (339)
T cd08239          67 VAVGPGVTHFRV-GDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALL  145 (339)
T ss_pred             EEECCCCccCCC-CCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhh
Confidence            345788888998 99997532                            2589999999999999999999999999999


Q ss_pred             ccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHH
Q 024295           66 SCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSIS  145 (269)
Q Consensus        66 ~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  145 (269)
                      ++++.|||+++ ....++++++|||+|+|++|++++|+++.+|+++|+++++++++.+.++++|+++++++++   .+ .
T Consensus       146 ~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~---~~-~  220 (339)
T cd08239         146 LCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQ---DD-V  220 (339)
T ss_pred             cchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCc---ch-H
Confidence            99999999997 5678899999999999999999999999999955999999999999999999999999876   55 6


Q ss_pred             HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchh-HhhhhCCceEEeeeccCCCCCCcHH
Q 024295          146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNV-IALACGGRTLKGTTFGGIKTKSDLP  224 (269)
Q Consensus       146 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  224 (269)
                      +.+++.+++.++|++||++|++..+..++++++++ |+++.+|.....  +++. ..++.+++++.+++...   .+++.
T Consensus       221 ~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~~~~~~i~g~~~~~---~~~~~  294 (339)
T cd08239         221 QEIRELTSGAGADVAIECSGNTAARRLALEAVRPW-GRLVLVGEGGEL--TIEVSNDLIRKQRTLIGSWYFS---VPDME  294 (339)
T ss_pred             HHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcCCCCc--ccCcHHHHHhCCCEEEEEecCC---HHHHH
Confidence            77777777778999999999887778899999996 999999975532  2332 34667999999987543   36799


Q ss_pred             HHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          225 TLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       225 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      ++++++.+|++++.++++++|+++++++||+.+.++..+|+||+|
T Consensus       295 ~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~gKvvi~~  339 (339)
T cd08239         295 ECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGESGKVVFVF  339 (339)
T ss_pred             HHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCCceEEEEeC
Confidence            999999999998888999999999999999999887778999976

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=3.2e-35  Score=253.73  Aligned_cols=230  Identities=45%  Similarity=0.808  Sum_probs=198.1

Q ss_pred             CcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295           37 STWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID  116 (269)
Q Consensus        37 g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~  116 (269)
                      |+|+||+.+++..++++|+++++++++++.+.+.++++++...++++++++|||+|+|++|++++|+++.+|++.|++++
T Consensus       146 G~~aeyv~v~~~~~~~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~  225 (378)
T PLN02827        146 SSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVD  225 (378)
T ss_pred             ccceeeEEechhheEECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence            79999999999999999999999999999889999998877778899999999999999999999999999996788999


Q ss_pred             CCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCcccc
Q 024295          117 KNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVP  196 (269)
Q Consensus       117 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  196 (269)
                      +++++.+.++++|+++++++++ ...++.+.+++.+++ ++|++||++|.+..+..+++.+++++|+++.+|.+.. ..+
T Consensus       226 ~~~~~~~~a~~lGa~~~i~~~~-~~~~~~~~v~~~~~~-g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~-~~~  302 (378)
T PLN02827        226 INPEKAEKAKTFGVTDFINPND-LSEPIQQVIKRMTGG-GADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKA-KPE  302 (378)
T ss_pred             CCHHHHHHHHHcCCcEEEcccc-cchHHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCC-Ccc
Confidence            8999999999999999998764 113677788888877 8999999999876789999999992299999997653 233


Q ss_pred             chh-HhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          197 LNV-IALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       197 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      ++. ..++.+++++.|+....+....++.++++++.+|+++++++++++|+++++.+||+.+.+++..|+||.+
T Consensus       303 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~~k~vi~~  376 (378)
T PLN02827        303 VSAHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKCLRCVIHM  376 (378)
T ss_pred             ccccHHHHhcCceEEeeecCCCchhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCceEEEEEe
Confidence            333 3466699999998766554446788999999999998877899999999999999999988878999875

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=6.7e-35  Score=251.29  Aligned_cols=229  Identities=41%  Similarity=0.732  Sum_probs=196.1

Q ss_pred             CcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295           37 STWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID  116 (269)
Q Consensus        37 g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~  116 (269)
                      |+|+||+.++++.++++|+++++++++++++++.+||+++...++++++++|||+|+|++|++++|+|+.+|+++|++++
T Consensus       139 G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~  218 (368)
T cd08300         139 STFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGID  218 (368)
T ss_pred             ccceeEEEEchhceEeCCCCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEe
Confidence            68999999999999999999999999999999999999988888999999999999999999999999999997799999


Q ss_pred             CCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccc
Q 024295          117 KNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMV  195 (269)
Q Consensus       117 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~  195 (269)
                      +++++.+.++++|+++++++.+ .++++.+.+++++++ ++|++||++|++..+..+++++++++|+++.+|.... ...
T Consensus       219 ~~~~~~~~~~~lGa~~~i~~~~-~~~~~~~~v~~~~~~-g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~  296 (368)
T cd08300         219 INPDKFELAKKFGATDCVNPKD-HDKPIQQVLVEMTDG-GVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEI  296 (368)
T ss_pred             CCHHHHHHHHHcCCCEEEcccc-cchHHHHHHHHHhCC-CCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCcc
Confidence            9999999999999999998865 112578888888877 9999999999877889999999873399999997642 233


Q ss_pred             cchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEee
Q 024295          196 PLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT  268 (269)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~  268 (269)
                      +++...+. ++..+.++..+.+..++++.++++++.++++++.++++++|+++++++||+.+.+++..|++++
T Consensus       297 ~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~~k~~~~  368 (368)
T cd08300         297 STRPFQLV-TGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKSIRTVVK  368 (368)
T ss_pred             ccCHHHHh-hcCeEEEEEecccCcHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCCceeeeC
Confidence            33444444 4557777766555555778999999999999888889999999999999999988877899875

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=1.3e-34  Score=249.23  Aligned_cols=230  Identities=52%  Similarity=0.897  Sum_probs=198.4

Q ss_pred             cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295           36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI  115 (269)
Q Consensus        36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~  115 (269)
                      .|+|+||++++++.++++|++++++++++++++++|||+++...++++++++|||+|+|++|++++|+|+..|+++|+++
T Consensus       136 ~g~~ae~~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~  215 (365)
T cd08277         136 TSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGV  215 (365)
T ss_pred             cccceeeEEEchhheEECCCCCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            47899999999999999999999999999999999999998888899999999999999999999999999999779999


Q ss_pred             cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccc
Q 024295          116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMV  195 (269)
Q Consensus       116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  195 (269)
                      ++++++++.++++|++++++..+ .+.++.+.+++.+++ ++|++||++|.+..+..+++++++++|+++.+|...+...
T Consensus       216 ~~~~~~~~~~~~~ga~~~i~~~~-~~~~~~~~~~~~~~~-g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  293 (365)
T cd08277         216 DINEDKFEKAKEFGATDFINPKD-SDKPVSEVIREMTGG-GVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAEL  293 (365)
T ss_pred             eCCHHHHHHHHHcCCCcEecccc-ccchHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCcccc
Confidence            99999999999999999998764 112356778877774 8999999999877889999999872399999997653334


Q ss_pred             cchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEee
Q 024295          196 PLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT  268 (269)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~  268 (269)
                      +++...++ +++++.++..+.+..+.+++++++++.+++++++++++++|+++++++||+.+.+++.+|++++
T Consensus       294 ~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~i~  365 (365)
T cd08277         294 SIRPFQLI-LGRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGECIRTVIT  365 (365)
T ss_pred             ccCHhHHh-hCCEEEeeecCCCChHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCCCceEeeC
Confidence            55665666 4889999887765545678999999999999888899999999999999999988877899874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=2.2e-34  Score=248.25  Aligned_cols=229  Identities=45%  Similarity=0.822  Sum_probs=198.6

Q ss_pred             CcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295           37 STWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID  116 (269)
Q Consensus        37 g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~  116 (269)
                      |+|+||+++++.+++++|+++++++++++++.+.+||+++....+++++++|||+|+|++|++++|+|+.+|+++|++++
T Consensus       140 G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~  219 (369)
T cd08301         140 STFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVD  219 (369)
T ss_pred             ccceeEEEEecccEEECCCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence            78999999999999999999999999999999999999988888999999999999999999999999999987799999


Q ss_pred             CCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccc
Q 024295          117 KNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMV  195 (269)
Q Consensus       117 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~  195 (269)
                      +++++.+.++++|++.++++.+ ....+.+.+++.+++ ++|++||++|.+..+..+++++++++|+++.+|.... ...
T Consensus       220 ~~~~~~~~~~~~Ga~~~i~~~~-~~~~~~~~v~~~~~~-~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~  297 (369)
T cd08301         220 LNPSKFEQAKKFGVTEFVNPKD-HDKPVQEVIAEMTGG-GVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVF  297 (369)
T ss_pred             CCHHHHHHHHHcCCceEEcccc-cchhHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCccc
Confidence            9999999999999998888763 113466778887776 8999999999877788999999992299999997653 344


Q ss_pred             cchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEee
Q 024295          196 PLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT  268 (269)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~  268 (269)
                      +++...++ +++++.|+....+..+++++++++++.+++++++++++++||++++++||+.+.+++.+|++|.
T Consensus       298 ~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~  369 (369)
T cd08301         298 STHPMNLL-NGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGECLRCILH  369 (369)
T ss_pred             ccCHHHHh-cCCeEEEEecCCCChHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCceeEEeC
Confidence            55554454 7899999887666555678999999999999888889999999999999999999888899874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=2e-34  Score=246.18  Aligned_cols=220  Identities=22%  Similarity=0.334  Sum_probs=187.8

Q ss_pred             cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295           36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI  115 (269)
Q Consensus        36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~  115 (269)
                      +|+|+||++++++.++++|++++++++++ ..++++||+++. .....++++|||+|+|++|++++|+++.+|+++|+++
T Consensus       123 ~G~~aey~~v~~~~~~~~P~~l~~~~aa~-~~~~~~a~~al~-~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~  200 (343)
T PRK09880        123 DGGFTRYKVVDTAQCIPYPEKADEKVMAF-AEPLAVAIHAAH-QAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCA  200 (343)
T ss_pred             CCceeeeEEechHHeEECCCCCCHHHHHh-hcHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence            59999999999999999999999877664 458889999875 4566689999999999999999999999999779999


Q ss_pred             cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccc
Q 024295          116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMV  195 (269)
Q Consensus       116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  195 (269)
                      ++++++++.++++|+++++++++   +++.+.. +. .+ ++|++||++|.+..+..++++++++ |+++.+|... ...
T Consensus       201 ~~~~~~~~~a~~lGa~~vi~~~~---~~~~~~~-~~-~g-~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~-~~~  272 (343)
T PRK09880        201 DVSPRSLSLAREMGADKLVNPQN---DDLDHYK-AE-KG-YFDVSFEVSGHPSSINTCLEVTRAK-GVMVQVGMGG-APP  272 (343)
T ss_pred             eCCHHHHHHHHHcCCcEEecCCc---ccHHHHh-cc-CC-CCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCC-CCC
Confidence            99999999999999999999876   5554322 22 23 6999999999877889999999996 9999999755 345


Q ss_pred             cchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          196 PLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +++...++.+++++.++...    .++++++++++++|++++.++++++|+++++++||+.+.++.. +|++|.+
T Consensus       273 ~~~~~~~~~k~~~i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  343 (343)
T PRK09880        273 EFPMMTLIVKEISLKGSFRF----TEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF  343 (343)
T ss_pred             ccCHHHHHhCCcEEEEEeec----cccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence            67777777899999988632    3679999999999999888889999999999999999987765 7999875

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-33  Score=241.06  Aligned_cols=247  Identities=21%  Similarity=0.273  Sum_probs=205.4

Q ss_pred             ccccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLS   66 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~   66 (269)
                      -.+|+++.++++ ||+|+...                           ..|+|+||+.++++.++++|+++++++++++.
T Consensus        66 ~~vG~~v~~~~v-Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~  144 (347)
T PRK10309         66 EAVGSGVDDLHP-GDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE  144 (347)
T ss_pred             EEeCCCCCCCCC-CCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEECcCCCCHHHhhhhh
Confidence            345788888999 99997642                           25899999999999999999999999998774


Q ss_pred             cchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHH
Q 024295           67 CGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISE  146 (269)
Q Consensus        67 ~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  146 (269)
                       +++++++++ ....++++++|||+|+|++|++++|+|+.+|++.|+++++++++.+.++++|+++++++++   .+ .+
T Consensus       145 -~~~~~~~~~-~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~---~~-~~  218 (347)
T PRK10309        145 -PITVGLHAF-HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSRE---MS-AP  218 (347)
T ss_pred             -HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcc---cC-HH
Confidence             566788874 5678899999999999999999999999999956899999999999999999999998875   44 45


Q ss_pred             HHHhhhCCCCcc-EEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccch---hHhhhhCCceEEeeeccCCC--CC
Q 024295          147 LVKGITHGMGVD-YCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLN---VIALACGGRTLKGTTFGGIK--TK  220 (269)
Q Consensus       147 ~i~~~~~~~~~d-~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~  220 (269)
                      .+.+.+++.++| ++|||+|++..+..++++++++ |+++.+|.... ..+++   ...++.+++++.|++.....  .+
T Consensus       219 ~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~  296 (347)
T PRK10309        219 QIQSVLRELRFDQLILETAGVPQTVELAIEIAGPR-AQLALVGTLHH-DLHLTSATFGKILRKELTVIGSWMNYSSPWPG  296 (347)
T ss_pred             HHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC-CcccChhhhhHHhhcCcEEEEEeccccCCcch
Confidence            677777666898 9999999887889999999996 99999997653 22232   23466789999998754221  23


Q ss_pred             CcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          221 SDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       221 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++++++++++|+++++++++++|+++++++||+.+.++.. +|+|+++
T Consensus       297 ~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  346 (347)
T PRK10309        297 QEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQI  346 (347)
T ss_pred             hHHHHHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeC
Confidence            678899999999999888899999999999999999988765 6999875

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=100.00  E-value=3.3e-33  Score=238.72  Aligned_cols=245  Identities=21%  Similarity=0.247  Sum_probs=202.2

Q ss_pred             cccccCCceeeeecCeEEeeeeccCcccceEeeccCc--eEE--cCCCCCcc-cccccccchhhhHHHHHHhcCCCCCCe
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANY--VVK--VDPSIDPS-DASFLSCGFTTGYGAAWKEAKVEKGSS   87 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~--~~~--vp~~~~~~-~aa~~~~~~~~a~~~l~~~~~~~~~~~   87 (269)
                      +..+|+++.++++ ||+|+++   |+|+||..++...  +.+  +|++++++ +++.++++++|||+++...++++++++
T Consensus        86 v~~vg~~v~~~~~-Gd~V~~~---~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~  161 (348)
T PLN03154         86 SKVVDSDDPNFKP-GDLISGI---TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDS  161 (348)
T ss_pred             EEEEecCCCCCCC-CCEEEec---CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCE
Confidence            4567888888999 9999865   6799999998753  544  58999986 688899999999999988889999999


Q ss_pred             EEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           88 VAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        88 vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      |||+|+ |++|++++|+||..|+ +|+++++++++.+.++ ++|+++++++++  ..++.+.+++.+++ ++|++||++|
T Consensus       162 VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~--~~~~~~~i~~~~~~-gvD~v~d~vG  237 (348)
T PLN03154        162 VFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKLGFDEAFNYKE--EPDLDAALKRYFPE-GIDIYFDNVG  237 (348)
T ss_pred             EEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhcCCCEEEECCC--cccHHHHHHHHCCC-CcEEEEECCC
Confidence            999997 9999999999999999 8999999999999987 799999999864  13677888887765 8999999999


Q ss_pred             ChhHHHHHHHHcccCCcEEEEEccCCCccc-----cchhHhhhhCCceEEeeeccCCC--CCCcHHHHHHHHHCCCCCCC
Q 024295          166 VPSLLSEALETTKVGKGKVIVIGVGVDAMV-----PLNVIALACGGRTLKGTTFGGIK--TKSDLPTLLDKCKNKEFKLH  238 (269)
Q Consensus       166 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~  238 (269)
                      +. .+..++++++++ |+++.+|.......     .++...++.+++++.|+....+.  ..+.++++++++++|++++ 
T Consensus       238 ~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~-  314 (348)
T PLN03154        238 GD-MLDAALLNMKIH-GRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVY-  314 (348)
T ss_pred             HH-HHHHHHHHhccC-CEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCccC-
Confidence            75 889999999996 99999997543211     12455677789999988654321  1245788999999999764 


Q ss_pred             cceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          239 QLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       239 ~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                       .+..+|+++++++||+.+++++. +|+||++
T Consensus       315 -~~~~~~~L~~~~~A~~~l~~g~~~GKvVl~~  345 (348)
T PLN03154        315 -IEDMSEGLESAPAALVGLFSGKNVGKQVIRV  345 (348)
T ss_pred             -ceecccCHHHHHHHHHHHHcCCCCceEEEEe
Confidence             36678999999999999988876 6999874

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=4.7e-33  Score=222.68  Aligned_cols=218  Identities=24%  Similarity=0.410  Sum_probs=193.3

Q ss_pred             CcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295           37 STWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID  116 (269)
Q Consensus        37 g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~  116 (269)
                      |+||+|+++++.+++++|++++.+.||.+.|+..|+|..| ...++.||+++-|.|+|++|.+++|+||++|. +|++++
T Consensus       135 ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis  212 (360)
T KOG0023|consen  135 GGFQEYAVVDEVFAIKIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVIS  212 (360)
T ss_pred             CccceeEEEeeeeEEECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEe
Confidence            6699999999999999999999999999999999999987 56788899999999997799999999999999 999999


Q ss_pred             CCc-chHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccc
Q 024295          117 KNP-WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMV  195 (269)
Q Consensus       117 ~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  195 (269)
                      ++. +|.+.++.+|+++.++..+  ++++.+.+.+.+++ ++|-+.+.  ....+..++++++.+ |++|++|.+.. +.
T Consensus       213 ~~~~kkeea~~~LGAd~fv~~~~--d~d~~~~~~~~~dg-~~~~v~~~--a~~~~~~~~~~lk~~-Gt~V~vg~p~~-~~  285 (360)
T KOG0023|consen  213 TSSKKKEEAIKSLGADVFVDSTE--DPDIMKAIMKTTDG-GIDTVSNL--AEHALEPLLGLLKVN-GTLVLVGLPEK-PL  285 (360)
T ss_pred             CCchhHHHHHHhcCcceeEEecC--CHHHHHHHHHhhcC-cceeeeec--cccchHHHHHHhhcC-CEEEEEeCcCC-cc
Confidence            887 5666677799999988773  38899999988776 77777665  445788999999996 99999999885 88


Q ss_pred             cchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          196 PLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      .++.+++..+.+++.||..++   +++.++++++..++.++++   .+..+++++++||+.|++++. .|.|+++
T Consensus       286 ~~~~~~lil~~~~I~GS~vG~---~ket~E~Ldf~a~~~ik~~---IE~v~~~~v~~a~erm~kgdV~yRfVvD~  354 (360)
T KOG0023|consen  286 KLDTFPLILGRKSIKGSIVGS---RKETQEALDFVARGLIKSP---IELVKLSEVNEAYERMEKGDVRYRFVVDV  354 (360)
T ss_pred             cccchhhhcccEEEEeecccc---HHHHHHHHHHHHcCCCcCc---eEEEehhHHHHHHHHHHhcCeeEEEEEEc
Confidence            899999999999999999887   4789999999999998775   468999999999999999987 4888864

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=2e-32  Score=234.32  Aligned_cols=226  Identities=25%  Similarity=0.350  Sum_probs=193.7

Q ss_pred             cCcccceEeeccCceEEcCC------CCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC
Q 024295           36 CSTWSEYMVIDANYVVKVDP------SIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA  109 (269)
Q Consensus        36 ~g~~a~~~~v~~~~~~~vp~------~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~  109 (269)
                      +|+|+||+.++++.++++|+      ++++++++.+++++.+||+++. ...++++++|+|+|+|++|++++|+|+..|+
T Consensus       113 ~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a~~-~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~  191 (349)
T TIGR03201       113 QGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAV-QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA  191 (349)
T ss_pred             CCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            58999999999999999999      8999999999999999999875 5789999999999999999999999999999


Q ss_pred             CeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCcc----EEEEccCChhHHHHHHHHcccCCcEEE
Q 024295          110 AKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVD----YCFECTGVPSLLSEALETTKVGKGKVI  185 (269)
Q Consensus       110 ~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d----~v~d~~g~~~~~~~~~~~l~~~~G~~v  185 (269)
                       +|+++++++++.+.++++|+++++++.+.+.+++.+.+++++++.++|    ++|||+|++..++.++++++++ |+++
T Consensus       192 -~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~-G~iv  269 (349)
T TIGR03201       192 -AVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHG-GTLV  269 (349)
T ss_pred             -eEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcC-CeEE
Confidence             899999999999999999999999876511235777788888777886    8999999887788899999996 9999


Q ss_pred             EEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-ee
Q 024295          186 VIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VK  264 (269)
Q Consensus       186 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k  264 (269)
                      .+|.... ..+++...++.++.++.+++...   .++++++++++.+|++++.++++ +||++++++||+.+.+++. +|
T Consensus       270 ~~G~~~~-~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~i~~g~i~~~~~i~-~~~l~~~~~A~~~~~~~~~~~k  344 (349)
T TIGR03201       270 VVGYTMA-KTEYRLSNLMAFHARALGNWGCP---PDRYPAALDLVLDGKIQLGPFVE-RRPLDQIEHVFAAAHHHKLKRR  344 (349)
T ss_pred             EECcCCC-CcccCHHHHhhcccEEEEEecCC---HHHHHHHHHHHHcCCCCcccceE-EecHHHHHHHHHHHHcCCccce
Confidence            9997653 34566667777888898876432   36799999999999998777775 6999999999999988775 59


Q ss_pred             EEeeC
Q 024295          265 VLITI  269 (269)
Q Consensus       265 ~vl~~  269 (269)
                      +++++
T Consensus       345 ~~~~~  349 (349)
T TIGR03201       345 AILTP  349 (349)
T ss_pred             EEecC
Confidence            88864

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=4.3e-32  Score=233.41  Aligned_cols=251  Identities=26%  Similarity=0.403  Sum_probs=209.0

Q ss_pred             ccccCCcee------eeecCeEEeeee----------------------------------ccCcccceEeeccC-ceEE
Q 024295           14 GLMLDSTSR------MSVRGQKLYHIF----------------------------------SCSTWSEYMVIDAN-YVVK   52 (269)
Q Consensus        14 ~~vg~~~~~------~~~~Gd~v~~~~----------------------------------~~g~~a~~~~v~~~-~~~~   52 (269)
                      -.+|+++.+      +++ ||+|+...                                  ..|+|+||+.++++ .+++
T Consensus        67 ~~vG~~v~~~~~~~~~~~-Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~  145 (361)
T cd08231          67 VALGGGVTTDVAGEPLKV-GDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVR  145 (361)
T ss_pred             EEeCCCccccccCCccCC-CCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEE
Confidence            345777765      888 99998652                                  24899999999996 7999


Q ss_pred             cCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce
Q 024295           53 VDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD  132 (269)
Q Consensus        53 vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~  132 (269)
                      +|++++.+++++++++++|||+++......+++++|||+|+|++|++++++|+..|+++|+++++++++.+.++++|++.
T Consensus       146 lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~  225 (361)
T cd08231         146 VPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADA  225 (361)
T ss_pred             CCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCe
Confidence            99999999999998999999999877777779999999999999999999999999978999999999999999999999


Q ss_pred             eeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEe
Q 024295          133 FINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKG  211 (269)
Q Consensus       133 v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~  211 (269)
                      ++++++....++.+.+.+.+++.++|++||++|+...+..++++++++ |+++.+|.... ...+++...++.+++++.+
T Consensus       226 vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  304 (361)
T cd08231         226 TIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG-GTYVLVGSVAPAGTVPLDPERIVRKNLTIIG  304 (361)
T ss_pred             EEcCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccC-CEEEEEcCCCCCCccccCHHHHhhcccEEEE
Confidence            888765111223356778887779999999998766789999999996 99999996642 3445565566779999988


Q ss_pred             eeccCCCCCCcHHHHHHHHHCC--CCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          212 TTFGGIKTKSDLPTLLDKCKNK--EFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       212 ~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      +....   .+++.++++++.++  .++++++++++|+++++++||+.+.++..+|+||++
T Consensus       305 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~~~k~vi~~  361 (361)
T cd08231         305 VHNYD---PSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGTALKVVIDP  361 (361)
T ss_pred             cccCC---chhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCCceEEEeCC
Confidence            86432   46789999999988  666777889999999999999999887778999875

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=3.3e-32  Score=233.61  Aligned_cols=238  Identities=22%  Similarity=0.375  Sum_probs=195.8

Q ss_pred             ccccCCceeeeecCeEEeee-----------------------------------eccCcccceEeeccCceEEcCCCCC
Q 024295           14 GLMLDSTSRMSVRGQKLYHI-----------------------------------FSCSTWSEYMVIDANYVVKVDPSID   58 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~-----------------------------------~~~g~~a~~~~v~~~~~~~vp~~~~   58 (269)
                      -.+|+++.++++ ||+|+..                                   ..+|+|+||++++++.++++|++++
T Consensus        79 ~~vG~~v~~~~v-GdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls  157 (360)
T PLN02586         79 TKLGKNVKKFKE-GDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLP  157 (360)
T ss_pred             EEECCCCCccCC-CCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCC
Confidence            335788888898 9998631                                   1158999999999999999999999


Q ss_pred             cccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchH-HHHHhCCCceeeCCC
Q 024295           59 PSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKK-EKGKAFGMTDFINPD  137 (269)
Q Consensus        59 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~-~~~~~~g~~~v~~~~  137 (269)
                      +++++++++.+.|||+++.....++++++|||.|+|++|++++|+||.+|+ +|++++.++++. +.++++|+++++++.
T Consensus       158 ~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~Ga~~vi~~~  236 (360)
T PLN02586        158 LDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRLGADSFLVST  236 (360)
T ss_pred             HHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhCCCcEEEcCC
Confidence            999999999999999988766777899999999999999999999999999 788887666554 456789999999875


Q ss_pred             CCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC
Q 024295          138 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI  217 (269)
Q Consensus       138 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (269)
                      +   .   +.+++.++  ++|++||++|.+..+..++++++++ |+++.+|.... ..+++...++.++..+.++..+. 
T Consensus       237 ~---~---~~~~~~~~--~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~vG~~~~-~~~~~~~~~~~~~~~i~g~~~~~-  305 (360)
T PLN02586        237 D---P---EKMKAAIG--TMDYIIDTVSAVHALGPLLGLLKVN-GKLITLGLPEK-PLELPIFPLVLGRKLVGGSDIGG-  305 (360)
T ss_pred             C---H---HHHHhhcC--CCCEEEECCCCHHHHHHHHHHhcCC-cEEEEeCCCCC-CCccCHHHHHhCCeEEEEcCcCC-
Confidence            4   2   24445443  6999999999876889999999996 99999997642 45667777777888888876543 


Q ss_pred             CCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          218 KTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       218 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                        .++++++++++.+|++++.  + ++|+++++++||+.+.+++. +|+|+++
T Consensus       306 --~~~~~~~~~li~~g~i~~~--~-~~~~l~~~~~A~~~~~~~~~~gkvvi~~  353 (360)
T PLN02586        306 --IKETQEMLDFCAKHNITAD--I-ELIRMDEINTAMERLAKSDVRYRFVIDV  353 (360)
T ss_pred             --HHHHHHHHHHHHhCCCCCc--E-EEEeHHHHHHHHHHHHcCCCcEEEEEEc
Confidence              3578999999999998753  4 58999999999999988876 6999864

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=4e-32  Score=232.75  Aligned_cols=243  Identities=23%  Similarity=0.396  Sum_probs=210.7

Q ss_pred             cccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295           15 LMLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLS   66 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~   66 (269)
                      .+|+++.++++ ||+|++..                            .+|+|+||+.++.+.++++|+++++++++.+ 
T Consensus        78 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~-  155 (351)
T cd08233          78 EVGSGVTGFKV-GDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALV-  155 (351)
T ss_pred             EeCCCCCCCCC-CCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhc-
Confidence            35778888999 99998521                            1589999999999999999999999998876 


Q ss_pred             cchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHH
Q 024295           67 CGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISE  146 (269)
Q Consensus        67 ~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  146 (269)
                      .++.+||+++ ...+++++++|||+|+|++|++++|+|+..|+++|+++++++++.+.++++|++.++++++   .++.+
T Consensus       156 ~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~---~~~~~  231 (351)
T cd08233         156 EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTE---VDVVA  231 (351)
T ss_pred             cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCc---cCHHH
Confidence            5888999998 7888999999999999999999999999999978999999999999999999999999887   78888


Q ss_pred             HHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHH
Q 024295          147 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTL  226 (269)
Q Consensus       147 ~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (269)
                      .+++.+++.++|++||++|.+..+..++++++++ |+++.+|... ...+++...++.+++++.++...   .++.++++
T Consensus       232 ~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~  306 (351)
T cd08233         232 EVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPR-GTAVNVAIWE-KPISFNPNDLVLKEKTLTGSICY---TREDFEEV  306 (351)
T ss_pred             HHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-CEEEEEccCC-CCCccCHHHHHhhCcEEEEEecc---CcchHHHH
Confidence            8988887768999999999776889999999996 9999999765 35567777777899999988643   24789999


Q ss_pred             HHHHHCCCCCCCcceeEEeehhhH-HHHHHHhcCCCe--eeEEee
Q 024295          227 LDKCKNKEFKLHQLLTHHVKLEEI-DKAIQLLKQPDC--VKVLIT  268 (269)
Q Consensus       227 ~~l~~~g~~~~~~~~~~~~~~~~~-~~a~~~~~~~~~--~k~vl~  268 (269)
                      +++++++++++.+.++++|+++++ ++||+.+.++..  +|+||.
T Consensus       307 ~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~~  351 (351)
T cd08233         307 IDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILVS  351 (351)
T ss_pred             HHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEeC
Confidence            999999999877888999999996 799998877764  799873

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=5.3e-32  Score=233.10  Aligned_cols=238  Identities=20%  Similarity=0.350  Sum_probs=196.5

Q ss_pred             ccccCCceeeeecCeEEeee-----------------------------------eccCcccceEeeccCceEEcCCCCC
Q 024295           14 GLMLDSTSRMSVRGQKLYHI-----------------------------------FSCSTWSEYMVIDANYVVKVDPSID   58 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~-----------------------------------~~~g~~a~~~~v~~~~~~~vp~~~~   58 (269)
                      -.+|+++.++++ ||+|...                                   ..+|+|+||++++++.++++|++++
T Consensus        73 v~vG~~v~~~~v-GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls  151 (375)
T PLN02178         73 TKVGKNVTKFKE-GDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLP  151 (375)
T ss_pred             EEECCCCCccCC-CCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCC
Confidence            345788888998 9998631                                   0158999999999999999999999


Q ss_pred             cccccccccchhhhHHHHHHhcC-CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcch-HHHHHhCCCceeeCC
Q 024295           59 PSDASFLSCGFTTGYGAAWKEAK-VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK-KEKGKAFGMTDFINP  136 (269)
Q Consensus        59 ~~~aa~~~~~~~~a~~~l~~~~~-~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~-~~~~~~~g~~~v~~~  136 (269)
                      +++++++++...|||+++..... .+++++|+|.|+|++|++++|+|+.+|+ +|+++++++++ .+.++++|+++++++
T Consensus       152 ~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~~i~~  230 (375)
T PLN02178        152 SDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADSFLVT  230 (375)
T ss_pred             HHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcEEEcC
Confidence            99999999999999998755433 3689999999999999999999999999 78888876554 677889999999987


Q ss_pred             CCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccC
Q 024295          137 DDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGG  216 (269)
Q Consensus       137 ~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (269)
                      .+   .   +.+.+.++  ++|++||++|.+..+..++++++++ |+++.+|... .+.+++...++.+++++.|+....
T Consensus       231 ~~---~---~~v~~~~~--~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~vG~~~-~~~~~~~~~~~~~~~~i~g~~~~~  300 (375)
T PLN02178        231 TD---S---QKMKEAVG--TMDFIIDTVSAEHALLPLFSLLKVS-GKLVALGLPE-KPLDLPIFPLVLGRKMVGGSQIGG  300 (375)
T ss_pred             cC---H---HHHHHhhC--CCcEEEECCCcHHHHHHHHHhhcCC-CEEEEEccCC-CCCccCHHHHHhCCeEEEEeCccC
Confidence            53   2   34555543  7999999999876789999999996 9999999764 345667777778999999987543


Q ss_pred             CCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          217 IKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       217 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                         .+++.++++++.+|++++.  + ++||++++++||+.+.+++. +|+|+.+
T Consensus       301 ---~~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gkvvi~~  348 (375)
T PLN02178        301 ---MKETQEMLEFCAKHKIVSD--I-ELIKMSDINSAMDRLAKSDVRYRFVIDV  348 (375)
T ss_pred             ---HHHHHHHHHHHHhCCCccc--E-EEEeHHHHHHHHHHHHcCCCceEEEEEe
Confidence               3578999999999997754  4 57999999999999988876 6999864

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=6.1e-32  Score=230.17  Aligned_cols=247  Identities=26%  Similarity=0.402  Sum_probs=199.5

Q ss_pred             ccCCceeeeecCeEEeee-------e-----ccCcccceEeeccCceEE-cCCCCCcccccccccchhhhHHHHHHhcCC
Q 024295           16 MLDSTSRMSVRGQKLYHI-------F-----SCSTWSEYMVIDANYVVK-VDPSIDPSDASFLSCGFTTGYGAAWKEAKV   82 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~-------~-----~~g~~a~~~~v~~~~~~~-vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~   82 (269)
                      +.|+.|.+|..|.+.++-       .     .+|+|+||+++|.+++++ +|++++ .+++++..++.+++++.......
T Consensus        88 ~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~~-~~~aal~epla~~~~~~a~~~~~  166 (350)
T COG1063          88 IPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGID-EEAAALTEPLATAYHGHAERAAV  166 (350)
T ss_pred             cCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCCC-hhhhhhcChhhhhhhhhhhccCC
Confidence            345555555555553322       1     358999999999755555 578874 44555556999998875555556


Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      +++.+|+|+|+|++|++++++++..|+++|++++++++|++.+++ .|++.+++..+   ++....+.+.+++.++|++|
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~---~~~~~~~~~~t~g~g~D~vi  243 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSE---DDAGAEILELTGGRGADVVI  243 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCcc---ccHHHHHHHHhCCCCCCEEE
Confidence            666699999999999999999999999999999999999999999 66777777665   46777888888888999999


Q ss_pred             EccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcce
Q 024295          162 ECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLL  241 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  241 (269)
                      ||+|.+..+..+++.++++ |+++.+|.+......++...++.|++++.|+...  ..+.+++.+++++.+|++++.+++
T Consensus       244 e~~G~~~~~~~ai~~~r~g-G~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~--~~~~~~~~~~~ll~~g~i~~~~li  320 (350)
T COG1063         244 EAVGSPPALDQALEALRPG-GTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRP--SGREDFERALDLLASGKIDPEKLI  320 (350)
T ss_pred             ECCCCHHHHHHHHHHhcCC-CEEEEEeccCCccCccCHHHHHhcccEEEeccCC--CCcccHHHHHHHHHcCCCChhHce
Confidence            9999988899999999996 9999999887421167777888899999998421  134679999999999999999999


Q ss_pred             eEEeehhhHHHHHHHhcCCC--eeeEEeeC
Q 024295          242 THHVKLEEIDKAIQLLKQPD--CVKVLITI  269 (269)
Q Consensus       242 ~~~~~~~~~~~a~~~~~~~~--~~k~vl~~  269 (269)
                      ++.+++++++++|+.+.+.+  ..|+++.+
T Consensus       321 t~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~  350 (350)
T COG1063         321 THRLPLDDAAEAYELFADRKEEAIKVVLKP  350 (350)
T ss_pred             EeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            99999999999999988754  46999875

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=8.6e-32  Score=228.41  Aligned_cols=231  Identities=19%  Similarity=0.249  Sum_probs=194.4

Q ss_pred             ccccCCceeeeecCeEEeee----------------------------eccCcccceEeeccCceEEcCCCCCccccccc
Q 024295           14 GLMLDSTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFL   65 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~   65 (269)
                      -.+|+++.++++ ||+|+..                            ..+|+|+||+.+++..++++|+++++++++.+
T Consensus        69 ~~vG~~v~~~~~-Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l  147 (329)
T TIGR02822        69 AGRGADAGGFAV-GDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPL  147 (329)
T ss_pred             EEECCCCcccCC-CCEEEEcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEECCCCCCHHHhHHH
Confidence            345788888998 9999631                            12589999999999999999999999999999


Q ss_pred             ccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHH
Q 024295           66 SCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSIS  145 (269)
Q Consensus        66 ~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  145 (269)
                      ++++.|||+++. .++++++++|||+|+|++|++++|+|+..|+ +|+++++++++.+.++++|+++++++.+   ..  
T Consensus       148 ~~~~~ta~~~~~-~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~~~---~~--  220 (329)
T TIGR02822       148 LCAGIIGYRALL-RASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAGGAYD---TP--  220 (329)
T ss_pred             hccchHHHHHHH-hcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceeccccc---cC--
Confidence            999999999974 6889999999999999999999999999999 8999999999999999999999987543   11  


Q ss_pred             HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHH
Q 024295          146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPT  225 (269)
Q Consensus       146 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (269)
                              ..++|+++++.+.+..+..++++++++ |+++.+|.......+++...++.+++++.+++...   ++++.+
T Consensus       221 --------~~~~d~~i~~~~~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~  288 (329)
T TIGR02822       221 --------PEPLDAAILFAPAGGLVPPALEALDRG-GVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTSNT---RADARE  288 (329)
T ss_pred             --------cccceEEEECCCcHHHHHHHHHhhCCC-cEEEEEeccCccCCCCCHHHHhhCCcEEEEeecCC---HHHHHH
Confidence                    126899999888777899999999996 99999997533223566666667899999876432   356888


Q ss_pred             HHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEe
Q 024295          226 LLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI  267 (269)
Q Consensus       226 ~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl  267 (269)
                      +++++++++++   +++++|+++++++||+.+.+++. +|+||
T Consensus       289 ~~~l~~~g~i~---~i~~~~~l~~~~~A~~~~~~~~~~Gkvvl  328 (329)
T TIGR02822       289 FLELAAQHGVR---VTTHTYPLSEADRALRDLKAGRFDGAAVL  328 (329)
T ss_pred             HHHHHHhCCCe---eEEEEEeHHHHHHHHHHHHcCCCceEEEe
Confidence            99999999975   35789999999999999988876 69887

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=8e-32  Score=229.73  Aligned_cols=245  Identities=20%  Similarity=0.250  Sum_probs=200.9

Q ss_pred             cccccCCceeeeecCeEEeeeeccCcccceEeecc-CceEEcC-CCCCcc-cccccccchhhhHHHHHHhcCCCCCCeEE
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDA-NYVVKVD-PSIDPS-DASFLSCGFTTGYGAAWKEAKVEKGSSVA   89 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~-~~~~~vp-~~~~~~-~aa~~~~~~~~a~~~l~~~~~~~~~~~vl   89 (269)
                      .+++++++..+.+ ||+|+++   |+|+||+++++ ..++++| ++++++ +++.++++++|||+++.+.+++++|++||
T Consensus        81 ~~~v~~~v~~~~v-Gd~V~~~---g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~Vl  156 (338)
T cd08295          81 AKVVDSGNPDFKV-GDLVWGF---TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVF  156 (338)
T ss_pred             EEEEecCCCCCCC-CCEEEec---CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEE
Confidence            4567888888999 9999875   68999999999 7999995 678876 78889999999999988889999999999


Q ss_pred             EEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh
Q 024295           90 VLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP  167 (269)
Q Consensus        90 I~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~  167 (269)
                      |+|+ |++|++++|+|+..|+ +|+++++++++.+.+++ +|+++++++.+  ..++.+.+++.++ .++|++||++|+.
T Consensus       157 I~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~--~~~~~~~i~~~~~-~gvd~v~d~~g~~  232 (338)
T cd08295         157 VSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLGFDDAFNYKE--EPDLDAALKRYFP-NGIDIYFDNVGGK  232 (338)
T ss_pred             EecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCCceeEEcCC--cccHHHHHHHhCC-CCcEEEEECCCHH
Confidence            9996 9999999999999999 89999999999999998 99999998653  1478888887776 4999999999974


Q ss_pred             hHHHHHHHHcccCCcEEEEEccCCCccc-----cchhHhhhhCCceEEeeeccCCCC--CCcHHHHHHHHHCCCCCCCcc
Q 024295          168 SLLSEALETTKVGKGKVIVIGVGVDAMV-----PLNVIALACGGRTLKGTTFGGIKT--KSDLPTLLDKCKNKEFKLHQL  240 (269)
Q Consensus       168 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~~~~  240 (269)
                       .+..++++++++ |+++.+|.......     ..+...+.++++++.++....+..  .+.+.++++++.+|++++.  
T Consensus       233 -~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--  308 (338)
T cd08295         233 -MLDAVLLNMNLH-GRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYV--  308 (338)
T ss_pred             -HHHHHHHHhccC-cEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEce--
Confidence             789999999996 99999986543111     123445666888888865443221  2347788999999997754  


Q ss_pred             eeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          241 LTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       241 ~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +...|+++++++|++.++++.. +|+|+++
T Consensus       309 ~~~~~~l~~~~~A~~~~~~~~~~GkvVl~~  338 (338)
T cd08295         309 EDIADGLESAPEAFVGLFTGSNIGKQVVKV  338 (338)
T ss_pred             eecccCHHHHHHHHHHHhcCCCCceEEEEC
Confidence            4456999999999999988766 6999874

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=100.00  E-value=5e-32  Score=225.00  Aligned_cols=205  Identities=25%  Similarity=0.359  Sum_probs=175.2

Q ss_pred             cCcccceEeeccC-ceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEE
Q 024295           36 CSTWSEYMVIDAN-YVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIG  114 (269)
Q Consensus        36 ~g~~a~~~~v~~~-~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~  114 (269)
                      +|+|+||++++++ .++++|+++++++++.+++.+.||++++. .....++++|||+|+|++|++++|+||.+|+++|++
T Consensus        72 ~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~  150 (280)
T TIGR03366        72 SGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAALE-AAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVA  150 (280)
T ss_pred             cccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHH-hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEE
Confidence            5899999999997 79999999999999999999999999874 455669999999999999999999999999966999


Q ss_pred             EcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-c
Q 024295          115 IDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-A  193 (269)
Q Consensus       115 ~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~  193 (269)
                      ++++++|.+.++++|++.+++..+     ..+.+++.+++.++|++||++|.+..++.++++++++ |+++.+|.... .
T Consensus       151 ~~~~~~r~~~a~~~Ga~~~i~~~~-----~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~  224 (280)
T TIGR03366       151 ADPSPDRRELALSFGATALAEPEV-----LAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVG-GTAVLAGSVFPGG  224 (280)
T ss_pred             ECCCHHHHHHHHHcCCcEecCchh-----hHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEeccCCCCC
Confidence            999999999999999999887643     2456667776668999999999887889999999996 99999997542 3


Q ss_pred             cccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCC--CCCCCcceeEEeehhhH
Q 024295          194 MVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNK--EFKLHQLLTHHVKLEEI  250 (269)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~  250 (269)
                      +.++++..++.|++++.|+...   ..++++++++++.++  +++++++++++||++++
T Consensus       225 ~~~i~~~~~~~~~~~i~g~~~~---~~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~  280 (280)
T TIGR03366       225 PVALDPEQVVRRWLTIRGVHNY---EPRHLDQAVRFLAANGQRFPFEELVGKPFPLADV  280 (280)
T ss_pred             ceeeCHHHHHhCCcEEEecCCC---CHHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence            4567778888899999998643   236799999999984  67777889999999863

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=3.9e-31  Score=228.85  Aligned_cols=248  Identities=21%  Similarity=0.262  Sum_probs=194.0

Q ss_pred             cccccCCceeeeecCeEEeee-------------------------------------eccCcccceEeeccC--ceEEc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHI-------------------------------------FSCSTWSEYMVIDAN--YVVKV   53 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~-------------------------------------~~~g~~a~~~~v~~~--~~~~v   53 (269)
                      +-.+|+++.++++ ||+|...                                     ..+|+||||+++++.  .++++
T Consensus        73 V~~vG~~V~~~~v-GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~v  151 (393)
T TIGR02819        73 VIEKGRDVEFIKI-GDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKF  151 (393)
T ss_pred             EEEEcCccccccC-CCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEEC
Confidence            3445788888888 9998531                                     024899999999964  79999


Q ss_pred             CCCCCc----ccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC
Q 024295           54 DPSIDP----SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG  129 (269)
Q Consensus        54 p~~~~~----~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g  129 (269)
                      |++++.    .+++.+.+++.+||+++. +.+++++++|||.|+|++|++++|+|+.+|++.++++++++++.+.++++|
T Consensus       152 P~~~~~~~~~~~~a~l~~~~~ta~~a~~-~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~G  230 (393)
T TIGR02819       152 PDRDQALEKIRDLTMLSDIFPTGYHGAV-TAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFG  230 (393)
T ss_pred             CCcccccccccceeeeccHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcC
Confidence            998753    356777788999999874 578999999999999999999999999999966777778888999999999


Q ss_pred             CceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh--------------hHHHHHHHHcccCCcEEEEEccCCC-cc
Q 024295          130 MTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP--------------SLLSEALETTKVGKGKVIVIGVGVD-AM  194 (269)
Q Consensus       130 ~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~--------------~~~~~~~~~l~~~~G~~v~~g~~~~-~~  194 (269)
                      ++.+....+   .++.+.+.+.+++.++|++||++|.+              ..++.+++.++++ |+++.+|.+.. ..
T Consensus       231 a~~v~~~~~---~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~i~~~G~~~~~~~  306 (393)
T TIGR02819       231 CETVDLSKD---ATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVG-GAIGIPGLYVTEDP  306 (393)
T ss_pred             CeEEecCCc---ccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCC-CEEEEeeecCCccc
Confidence            975443333   56777788887777899999999986              3789999999996 99999998631 11


Q ss_pred             -----------ccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCccee-EEeehhhHHHHHHHhcCCCe
Q 024295          195 -----------VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLT-HHVKLEEIDKAIQLLKQPDC  262 (269)
Q Consensus       195 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~  262 (269)
                                 .++.....+.++.++.++..   ...+.+.++++++.+|+++++++++ ++||++++++||+.+.+++.
T Consensus       307 ~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~~---~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~~~~~~~  383 (393)
T TIGR02819       307 GAVDAAAKTGSLSIRFGLGWAKSHSFHTGQT---PVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAEFDAGAA  383 (393)
T ss_pred             ccccccccccccccchHHhhccCceEEeccC---ChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHHHhhCCc
Confidence                       12223334446666665321   1123347899999999999887777 78999999999999988877


Q ss_pred             eeEEeeC
Q 024295          263 VKVLITI  269 (269)
Q Consensus       263 ~k~vl~~  269 (269)
                      +|++|++
T Consensus       384 ~Kvvi~~  390 (393)
T TIGR02819       384 KKFVIDP  390 (393)
T ss_pred             eEEEEeC
Confidence            8999875

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=6.8e-31  Score=226.13  Aligned_cols=227  Identities=41%  Similarity=0.700  Sum_probs=196.5

Q ss_pred             cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295           36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI  115 (269)
Q Consensus        36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~  115 (269)
                      .|+|++|+.++++.++++|+++++++++.+.+++.+||+++...+.++++++|||+|+|++|++++++|+..|++.|+++
T Consensus       135 ~g~~a~~~~v~~~~~~~lP~~~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~  214 (365)
T cd05279         135 TSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAV  214 (365)
T ss_pred             cccccceEEecCCceEECCCCCCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            36899999999999999999999999999999999999998888999999999999999999999999999999668888


Q ss_pred             cCCcchHHHHHhCCCceeeCCCCCCCc--cHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcc-cCCcEEEEEccCCC
Q 024295          116 DKNPWKKEKGKAFGMTDFINPDDEPNK--SISELVKGITHGMGVDYCFECTGVPSLLSEALETTK-VGKGKVIVIGVGVD  192 (269)
Q Consensus       116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~--~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~-~~~G~~v~~g~~~~  192 (269)
                      ++++++.+.++++|++++++..+   .  ++.+.++++++ .++|+++|++|....+..++++++ ++ |+++.+|....
T Consensus       215 ~~~~~~~~~~~~~g~~~~v~~~~---~~~~~~~~l~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~  289 (365)
T cd05279         215 DINKDKFEKAKQLGATECINPRD---QDKPIVEVLTEMTD-GGVDYAFEVIGSADTLKQALDATRLGG-GTSVVVGVPPS  289 (365)
T ss_pred             eCCHHHHHHHHHhCCCeeccccc---ccchHHHHHHHHhC-CCCcEEEECCCCHHHHHHHHHHhccCC-CEEEEEecCCC
Confidence            88999999999999999998765   4  67778888776 489999999987668899999999 96 99999986542


Q ss_pred             -ccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEee
Q 024295          193 -AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT  268 (269)
Q Consensus       193 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~  268 (269)
                       ....++...+ .++.++.|++...+...+.+..++++++++.+++.++++++++++++++||+.+++++..|++++
T Consensus       290 ~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~  365 (365)
T cd05279         290 GTEATLDPNDL-LTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGESIRTILT  365 (365)
T ss_pred             CCceeeCHHHH-hcCCeEEEEeccCCchHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCceeeeeC
Confidence             3455666666 58888888876665556789999999999998876678889999999999999988777888774

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=8e-31  Score=225.69  Aligned_cols=227  Identities=32%  Similarity=0.530  Sum_probs=195.0

Q ss_pred             cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295           36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI  115 (269)
Q Consensus        36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~  115 (269)
                      .|+|++|+++++.+++++|+++++++++.+++.+++|++++.....++++++|||+|+|++|++++|+|+..|++.++++
T Consensus       138 ~g~~~~y~~v~~~~~~~iP~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~  217 (365)
T cd08278         138 QSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAV  217 (365)
T ss_pred             ccceeeEEEecchhEEECCCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            48899999999999999999999999999999999999998888899999999999989999999999999999779999


Q ss_pred             cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-cc
Q 024295          116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AM  194 (269)
Q Consensus       116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~  194 (269)
                      ++++++.+.++++|++.++++.+   .++.+.+.+.+ +.++|+++|++|.+..+..++++++++ |+++.+|.... ..
T Consensus       218 ~~~~~k~~~~~~~g~~~~i~~~~---~~~~~~v~~~~-~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~  292 (365)
T cd08278         218 DIVDSRLELAKELGATHVINPKE---EDLVAAIREIT-GGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPGAE  292 (365)
T ss_pred             eCCHHHHHHHHHcCCcEEecCCC---cCHHHHHHHHh-CCCCcEEEECCCCcHHHHHHHHHhccC-CEEEEeCcCCCCCc
Confidence            99999999999999999998876   67888888877 559999999999766889999999996 99999997632 34


Q ss_pred             ccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEee
Q 024295          195 VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT  268 (269)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~  268 (269)
                      ..++...++.++.++.++........+.++++++++.++++.+.+.+ ..+++++++++++.+.++...|++++
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~-~~~~l~~~~~a~~~~~~~~~~k~~~~  365 (365)
T cd08278         293 VTLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLV-TFYPFEDINQAIADSESGKVIKPVLR  365 (365)
T ss_pred             cccCHHHHhhcCceEEEeecCCcChHHHHHHHHHHHHcCCCChHHhe-EEecHHHHHHHHHHHHCCCceEEEEC
Confidence            56666666568999988765433334567889999999997553344 47999999999999988877899875

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=7.9e-31  Score=222.36  Aligned_cols=242  Identities=18%  Similarity=0.206  Sum_probs=197.8

Q ss_pred             cccCCcee-eeecCeEEeeeec-cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEE-
Q 024295           15 LMLDSTSR-MSVRGQKLYHIFS-CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVL-   91 (269)
Q Consensus        15 ~vg~~~~~-~~~~Gd~v~~~~~-~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~-   91 (269)
                      .+|+++.+ +++ ||+|++... +|+|+||+.++++.++++|+++++++++.+++.++|||.. ...... ++++++|+ 
T Consensus        74 ~vG~~v~~~~~v-Gd~V~~~~~~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~-~~~~~~-~~~~vlv~~  150 (324)
T cd08291          74 AAGGGPLAQSLI-GKRVAFLAGSYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGM-LETARE-EGAKAVVHT  150 (324)
T ss_pred             EECCCccccCCC-CCEEEecCCCCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHH-HHhhcc-CCCcEEEEc
Confidence            35777775 888 999987654 3899999999999999999999999999888888999754 455555 55566665 


Q ss_pred             -cCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHH
Q 024295           92 -GLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLL  170 (269)
Q Consensus        92 -G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~  170 (269)
                       |+|++|++++|+|+.+|+ +|+++++++++.+.++++|+++++++.+   .++.+.+++.+++.++|++||++|+. ..
T Consensus       151 ~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~---~~~~~~v~~~~~~~~~d~vid~~g~~-~~  225 (324)
T cd08291         151 AAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIGAEYVLNSSD---PDFLEDLKELIAKLNATIFFDAVGGG-LT  225 (324)
T ss_pred             cCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEECCC---ccHHHHHHHHhCCCCCcEEEECCCcH-HH
Confidence             469999999999999999 8999999999999999999999999887   78889999888877999999999987 55


Q ss_pred             HHHHHHcccCCcEEEEEccCCCccc-cchhHhhhhCCceEEeeeccCCCC---CCcHHHHHHHHHCCCCCCCcceeEEee
Q 024295          171 SEALETTKVGKGKVIVIGVGVDAMV-PLNVIALACGGRTLKGTTFGGIKT---KSDLPTLLDKCKNKEFKLHQLLTHHVK  246 (269)
Q Consensus       171 ~~~~~~l~~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~  246 (269)
                      ...+++++++ |+++.+|....... .++...++.+++++.++....+..   .+.+.+++++++ ++  +++.++++|+
T Consensus       226 ~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~i~~~~~  301 (324)
T cd08291         226 GQILLAMPYG-STLYVYGYLSGKLDEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-TE--LKTTFASRYP  301 (324)
T ss_pred             HHHHHhhCCC-CEEEEEEecCCCCcccCCHHHHhhcCcEEEEEEHHHhhcccCHHHHHHHHHHHh-Cc--cccceeeEEc
Confidence            7789999996 99999986543222 355556667999999887654321   245778888887 76  4566889999


Q ss_pred             hhhHHHHHHHhcCCCe-eeEEee
Q 024295          247 LEEIDKAIQLLKQPDC-VKVLIT  268 (269)
Q Consensus       247 ~~~~~~a~~~~~~~~~-~k~vl~  268 (269)
                      ++++.+||+.+.++.. +|+++.
T Consensus       302 l~~~~~a~~~~~~~~~~Gkvv~~  324 (324)
T cd08291         302 LALTLEAIAFYSKNMSTGKKLLI  324 (324)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEeC
Confidence            9999999999888655 798874

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.98  E-value=1.2e-30  Score=223.82  Aligned_cols=237  Identities=27%  Similarity=0.317  Sum_probs=185.7

Q ss_pred             cccCCceeeeecCeEEeeee------------------------------ccCcccceEeeccCceEEcCCCCCcccccc
Q 024295           15 LMLDSTSRMSVRGQKLYHIF------------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASF   64 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~------------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~   64 (269)
                      .+|++ ..+++ ||+|+...                              .+|+|+||+.++++.++++|++++ +. +.
T Consensus        71 ~vG~~-~~~~v-GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~-~~-a~  146 (355)
T cd08230          71 EVGDG-SGLSP-GDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA-DV-GV  146 (355)
T ss_pred             EecCC-CCCCC-CCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEECCCCCC-cc-ee
Confidence            34777 78998 99997532                              248899999999999999999999 44 44


Q ss_pred             cccchhhhHHHHHH------hcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcC---CcchHHHHHhCCCceeeC
Q 024295           65 LSCGFTTGYGAAWK------EAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDK---NPWKKEKGKAFGMTDFIN  135 (269)
Q Consensus        65 ~~~~~~~a~~~l~~------~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~---~~~~~~~~~~~g~~~v~~  135 (269)
                      +..++.+++.++..      ...++++++|||+|+|++|++++|+||..|+ +|+++++   ++++++.++++|++. ++
T Consensus       147 ~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga~~-v~  224 (355)
T cd08230         147 LLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGATY-VN  224 (355)
T ss_pred             ecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCCEE-ec
Confidence            44577666655432      2235789999999999999999999999999 8999987   678999999999987 56


Q ss_pred             CCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccch----hHhhhhCCceEE
Q 024295          136 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLN----VIALACGGRTLK  210 (269)
Q Consensus       136 ~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~----~~~~~~~~~~~~  210 (269)
                      +.+   +++.+ .+  .. .++|++||++|.+..+..+++.++++ |+++.+|.... ...+++    ...++.+++++.
T Consensus       225 ~~~---~~~~~-~~--~~-~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~  296 (355)
T cd08230         225 SSK---TPVAE-VK--LV-GEFDLIIEATGVPPLAFEALPALAPN-GVVILFGVPGGGREFEVDGGELNRDLVLGNKALV  296 (355)
T ss_pred             CCc---cchhh-hh--hc-CCCCEEEECcCCHHHHHHHHHHccCC-cEEEEEecCCCCCccccChhhhhhhHhhcCcEEE
Confidence            654   44433 22  12 38999999999877889999999996 99999997664 344454    345667999999


Q ss_pred             eeeccCCCCCCcHHHHHHHHHCCCC----CCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          211 GTTFGGIKTKSDLPTLLDKCKNKEF----KLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~l~~~g~~----~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      |+....   ++++.++++++.+++.    .++++++++|+++++.+||+.+.++. +|+||+|
T Consensus       297 g~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~-~K~v~~~  355 (355)
T cd08230         297 GSVNAN---KRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE-IKVVIEW  355 (355)
T ss_pred             EecCCc---hhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhcccCC-eEEEeeC
Confidence            986443   3678999999988772    36677899999999999999887654 6999976

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=99.98  E-value=1.5e-30  Score=223.19  Aligned_cols=237  Identities=23%  Similarity=0.367  Sum_probs=195.6

Q ss_pred             cccCCceeeeecCeEEeee-----------------------------------eccCcccceEeeccCceEEcCCCCCc
Q 024295           15 LMLDSTSRMSVRGQKLYHI-----------------------------------FSCSTWSEYMVIDANYVVKVDPSIDP   59 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~-----------------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~   59 (269)
                      .+|+++.++++ ||+|+..                                   ..+|+|+||++++...++++|+++++
T Consensus        77 ~vG~~v~~~~~-Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~  155 (357)
T PLN02514         77 EVGSDVSKFTV-GDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAP  155 (357)
T ss_pred             EECCCcccccC-CCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCCCCH
Confidence            35788888999 9999631                                   12589999999999999999999999


Q ss_pred             ccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCceeeCCCC
Q 024295           60 SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDFINPDD  138 (269)
Q Consensus        60 ~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~  138 (269)
                      ++++.+++.+.|||+++......+++++|+|+|+|++|++++|+||..|+ +++++++++++...+ +++|+++++++.+
T Consensus       156 ~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~  234 (357)
T PLN02514        156 EQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGADDYLVSSD  234 (357)
T ss_pred             HHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCCcEEecCCC
Confidence            99999999999999998766667899999999999999999999999999 788888777666554 5699988877643


Q ss_pred             CCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCC
Q 024295          139 EPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIK  218 (269)
Q Consensus       139 ~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (269)
                         .   +.+.+.++  ++|++||++|....+..++++++++ |+++.+|.... ..+++...++.+++++.|++...  
T Consensus       235 ---~---~~~~~~~~--~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~~--  302 (357)
T PLN02514        235 ---A---AEMQEAAD--SLDYIIDTVPVFHPLEPYLSLLKLD-GKLILMGVINT-PLQFVTPMLMLGRKVITGSFIGS--  302 (357)
T ss_pred             ---h---HHHHHhcC--CCcEEEECCCchHHHHHHHHHhccC-CEEEEECCCCC-CCcccHHHHhhCCcEEEEEecCC--
Confidence               2   23444442  7999999999766889999999996 99999997653 45677777778999999987554  


Q ss_pred             CCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          219 TKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       219 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                       ..++.++++++.+|+++  +++ ++||++++.+||+.+.++.. +|+++.+
T Consensus       303 -~~~~~~~~~~~~~g~l~--~~i-~~~~l~~~~~A~~~~~~~~~~gk~v~~~  350 (357)
T PLN02514        303 -MKETEEMLEFCKEKGLT--SMI-EVVKMDYVNTAFERLEKNDVRYRFVVDV  350 (357)
T ss_pred             -HHHHHHHHHHHHhCCCc--CcE-EEEcHHHHHHHHHHHHcCCCceeEEEEc
Confidence             35789999999999854  455 58999999999999988776 5998864

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.98  E-value=4.2e-30  Score=221.70  Aligned_cols=230  Identities=39%  Similarity=0.660  Sum_probs=191.9

Q ss_pred             cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295           36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI  115 (269)
Q Consensus        36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~  115 (269)
                      .|+|+||++++++.++++|+++++++++++++++.+||+++...++++++++|||+|+|++|++++++++..|+.+|+++
T Consensus       142 ~G~~~e~~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~  221 (373)
T cd08299         142 TSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAV  221 (373)
T ss_pred             CCcccceEEecccceeeCCCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            48899999999999999999999999999999999999998888999999999999999999999999999998679999


Q ss_pred             cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHc-ccCCcEEEEEccCCC-c
Q 024295          116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETT-KVGKGKVIVIGVGVD-A  193 (269)
Q Consensus       116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l-~~~~G~~v~~g~~~~-~  193 (269)
                      ++++++++.++++|++++++..+ ...++.+.+.+++++ ++|+++|++|.+..+..++..+ +++ |+++.+|.... .
T Consensus       222 ~~~~~~~~~a~~lGa~~~i~~~~-~~~~~~~~v~~~~~~-~~d~vld~~g~~~~~~~~~~~~~~~~-G~~v~~g~~~~~~  298 (373)
T cd08299         222 DINKDKFAKAKELGATECINPQD-YKKPIQEVLTEMTDG-GVDFSFEVIGRLDTMKAALASCHEGY-GVSVIVGVPPSSQ  298 (373)
T ss_pred             cCCHHHHHHHHHcCCceEecccc-cchhHHHHHHHHhCC-CCeEEEECCCCcHHHHHHHHhhccCC-CEEEEEccCCCCc
Confidence            99999999999999999998764 012366777777764 8999999999766777767765 565 99999997643 2


Q ss_pred             cccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          194 MVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      ..+++...+ .++.++.+++.+.+..++.+.++++.+.++.++++++++++|++++++++|+.+.++...|+++++
T Consensus       299 ~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~~k~~~~~  373 (373)
T cd08299         299 NLSINPMLL-LTGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKSIRTVLTF  373 (373)
T ss_pred             eeecCHHHH-hcCCeEEEEEecCCccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCcceEEEeC
Confidence            344444334 377899988776654446677888888888877777788999999999999999887777998874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.98  E-value=8.1e-31  Score=220.54  Aligned_cols=226  Identities=18%  Similarity=0.273  Sum_probs=180.2

Q ss_pred             ccCCceeeeecCeEEeeee---------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCC
Q 024295           16 MLDSTSRMSVRGQKLYHIF---------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGS   86 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~---------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~   86 (269)
                      +|+++ .+++ ||+|+...         ..|+|+||+.++++.++++|++++++. ++++ ++.+||+++.+ . ..+++
T Consensus        73 vG~~v-~~~v-GdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~  146 (308)
T TIGR01202        73 AGPDT-GFRP-GDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALLA-LAATARHAVAG-A-EVKVL  146 (308)
T ss_pred             ecCCC-CCCC-CCEEEEeCccccccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCC
Confidence            46776 5888 99998532         149999999999999999999999764 5554 57899998754 3 34688


Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  166 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  166 (269)
                      ++||+|+|++|++++|+||++|++.|+++++++++++.++.+   +++|+.+   .          .+.++|++|||+|+
T Consensus       147 ~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i~~~~---~----------~~~g~Dvvid~~G~  210 (308)
T TIGR01202       147 PDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVLDPEK---D----------PRRDYRAIYDASGD  210 (308)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---cccChhh---c----------cCCCCCEEEECCCC
Confidence            999999999999999999999996677787777776666543   4555432   1          13389999999999


Q ss_pred             hhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEee
Q 024295          167 PSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVK  246 (269)
Q Consensus       167 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  246 (269)
                      +..++.++++++++ |+++.+|.... +.+++...++.+++++.++...   .+++++++++++++|+++++++++++||
T Consensus       211 ~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~l~~~g~i~~~~~it~~~~  285 (308)
T TIGR01202       211 PSLIDTLVRRLAKG-GEIVLAGFYTE-PVNFDFVPAFMKEARLRIAAEW---QPGDLHAVRELIESGALSLDGLITHQRP  285 (308)
T ss_pred             HHHHHHHHHhhhcC-cEEEEEeecCC-CcccccchhhhcceEEEEeccc---chhHHHHHHHHHHcCCCChhhccceeec
Confidence            87789999999996 99999997653 4556666677788999887533   2367999999999999998889999999


Q ss_pred             hhhHHHHHHHhcCC-CeeeEEee
Q 024295          247 LEEIDKAIQLLKQP-DCVKVLIT  268 (269)
Q Consensus       247 ~~~~~~a~~~~~~~-~~~k~vl~  268 (269)
                      ++++++||+.+.++ ..+|++|+
T Consensus       286 l~~~~~A~~~~~~~~~~~Kv~~~  308 (308)
T TIGR01202       286 ASDAAEAYMTAFSDPDCLKMILD  308 (308)
T ss_pred             HHHHHHHHHHHhcCcCceEEEeC
Confidence            99999999977654 44799874

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.97  E-value=3.2e-30  Score=224.97  Aligned_cols=249  Identities=20%  Similarity=0.225  Sum_probs=197.7

Q ss_pred             cccccCCce-eeeecCeEEeeee----------------ccCcccceEeeccC----ceEEcCCCCCcccccccccchh-
Q 024295           13 NGLMLDSTS-RMSVRGQKLYHIF----------------SCSTWSEYMVIDAN----YVVKVDPSIDPSDASFLSCGFT-   70 (269)
Q Consensus        13 ~~~vg~~~~-~~~~~Gd~v~~~~----------------~~g~~a~~~~v~~~----~~~~vp~~~~~~~aa~~~~~~~-   70 (269)
                      +-.+|+++. ++++ ||+|+...                .+|+|+||++++++    .++++|+++++++++++. ++. 
T Consensus        74 V~~vG~~v~~~~~v-GdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~e-pl~~  151 (410)
T cd08238          74 ILKVGKKWQGKYKP-GQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVE-PLSC  151 (410)
T ss_pred             EEEeCCCccCCCCC-CCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcc-hHHH
Confidence            344578876 5999 99997532                25899999999987    689999999999888652 222 


Q ss_pred             --hhHHHH--------HHhcCCCCCCeEEEEc-CChhHHHHHHHHHHcC--CCeEEEEcCCcchHHHHHhC--------C
Q 024295           71 --TGYGAA--------WKEAKVEKGSSVAVLG-LGTVGLGAVDGARMHG--AAKIIGIDKNPWKKEKGKAF--------G  129 (269)
Q Consensus        71 --~a~~~l--------~~~~~~~~~~~vlI~G-~g~~G~~a~~la~~~g--~~~v~~~~~~~~~~~~~~~~--------g  129 (269)
                        +++.++        ..+++++++++|+|+| +|++|++++|+|+..|  +.+|++++++++|++.++++        |
T Consensus       152 ~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~G  231 (410)
T cd08238         152 VIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRG  231 (410)
T ss_pred             HHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccC
Confidence              233332        2457889999999998 5999999999999974  45899999999999999997        6


Q ss_pred             Cc-eeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC-C-ccccchhHhhhhCC
Q 024295          130 MT-DFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV-D-AMVPLNVIALACGG  206 (269)
Q Consensus       130 ~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~-~-~~~~~~~~~~~~~~  206 (269)
                      ++ .++++.+  ..++.+.+++++++.++|++||++|.+..+..++++++++ |+++.++... . ...+++...++.++
T Consensus       232 a~~~~i~~~~--~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~-G~~v~~~g~~~~~~~~~~~~~~~~~~~  308 (410)
T cd08238         232 IELLYVNPAT--IDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPD-GCLNFFAGPVDKNFSAPLNFYNVHYNN  308 (410)
T ss_pred             ceEEEECCCc--cccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccC-CeEEEEEccCCCCccccccHHHhhhcC
Confidence            66 5677643  1467788888888779999999999877899999999996 8887765332 1 23467777788899


Q ss_pred             ceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          207 RTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      +++.|+....   +++++++++++.+|++++.++++++||++++++||+.+..+..+|+||.+
T Consensus       309 ~~i~g~~~~~---~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~gKvvl~~  368 (410)
T cd08238         309 THYVGTSGGN---TDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLPGIPGGKKLIYT  368 (410)
T ss_pred             cEEEEeCCCC---HHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhhccCCceEEEEC
Confidence            9999986433   36799999999999999888999999999999999999844347999864

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.97  E-value=7.1e-30  Score=218.84  Aligned_cols=247  Identities=23%  Similarity=0.390  Sum_probs=202.3

Q ss_pred             cccCCceeeeecCeEEeeee------------------------------ccCcccceEeeccC--ceEEcCCCCCcccc
Q 024295           15 LMLDSTSRMSVRGQKLYHIF------------------------------SCSTWSEYMVIDAN--YVVKVDPSIDPSDA   62 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~------------------------------~~g~~a~~~~v~~~--~~~~vp~~~~~~~a   62 (269)
                      .+|+++.++.+ ||+|+...                              .+|+|+||+.++.+  .++++|++++++++
T Consensus        67 ~vG~~v~~~~~-Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~a  145 (351)
T cd08285          67 EVGSEVKDFKP-GDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQA  145 (351)
T ss_pred             EecCCcCccCC-CCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHHh
Confidence            35778888888 99998632                              25899999999974  89999999999999


Q ss_pred             cccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCc
Q 024295           63 SFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNK  142 (269)
Q Consensus        63 a~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  142 (269)
                      +.++.++++|++++ ..+.++++++|||+|+|++|++++|+|+.+|++.++++++++++.+.++++|+++++++.+   .
T Consensus       146 a~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~---~  221 (351)
T cd08285         146 VMLPDMMSTGFHGA-ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKN---G  221 (351)
T ss_pred             hhhccchhhHHHHH-HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCC---C
Confidence            99988999999985 6788999999999999999999999999999977999999999999999999999999876   7


Q ss_pred             cHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchh--HhhhhCCceEEeeeccCCCC
Q 024295          143 SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNV--IALACGGRTLKGTTFGGIKT  219 (269)
Q Consensus       143 ~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~  219 (269)
                      ++.+.+.+.+++.++|+++|++|++..+..++++++++ |+++.+|.... ...+++.  .....+..++.+....  ..
T Consensus       222 ~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~  298 (351)
T cd08285         222 DVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLCP--GG  298 (351)
T ss_pred             CHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcC-CEEEEecccCCCceeecChhhhhhhccccEEEEeecC--Cc
Confidence            78888888777678999999999877889999999996 99999987653 2233332  2222355666654321  12


Q ss_pred             CCcHHHHHHHHHCCCCCCCc-ceeEEeehhhHHHHHHHhcCCC--eeeEEeeC
Q 024295          220 KSDLPTLLDKCKNKEFKLHQ-LLTHHVKLEEIDKAIQLLKQPD--CVKVLITI  269 (269)
Q Consensus       220 ~~~~~~~~~l~~~g~~~~~~-~~~~~~~~~~~~~a~~~~~~~~--~~k~vl~~  269 (269)
                      .+.++++++++.+|++++.. .+.+++++++++++++.+.++.  .+|++|++
T Consensus       299 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~  351 (351)
T cd08285         299 RLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF  351 (351)
T ss_pred             cccHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence            46799999999999988743 3445699999999999998876  36999875

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.97  E-value=9.4e-31  Score=223.18  Aligned_cols=230  Identities=20%  Similarity=0.260  Sum_probs=180.4

Q ss_pred             CceeeeecCeEEeeee------------------------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHH
Q 024295           19 STSRMSVRGQKLYHIF------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYG   74 (269)
Q Consensus        19 ~~~~~~~~Gd~v~~~~------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~   74 (269)
                      +...+++ ||+|+...                        .+|+|+||+.+|+++++++|+++++++|+++. ++++|++
T Consensus        74 g~~~~~v-GdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~~~-~~~~a~~  151 (341)
T cd08237          74 PTGTYKV-GTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAAFTE-LVSVGVH  151 (341)
T ss_pred             CCCccCC-CCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCChHHhhhhc-hHHHHHH
Confidence            3346888 99997431                        24889999999999999999999999888664 8899999


Q ss_pred             HHHH--hcCCCCCCeEEEEcCChhHHHHHHHHHH-cCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhh
Q 024295           75 AAWK--EAKVEKGSSVAVLGLGTVGLGAVDGARM-HGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        75 ~l~~--~~~~~~~~~vlI~G~g~~G~~a~~la~~-~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      ++..  ...++++++|||+|+|++|++++|+++. .|..+|++++++++|++.+++.+++..++       ++       
T Consensus       152 a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~-------~~-------  217 (341)
T cd08237         152 AISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLID-------DI-------  217 (341)
T ss_pred             HHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehh-------hh-------
Confidence            8754  3457889999999999999999999996 66558999999999999998866553321       11       


Q ss_pred             hCCCCccEEEEccCC---hhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHH
Q 024295          152 THGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLD  228 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (269)
                      .++.++|++||++|+   +..+..++++++++ |+++.+|... .+.+++...++.+++++.++....   .++++++++
T Consensus       218 ~~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~k~~~i~g~~~~~---~~~~~~~~~  292 (341)
T cd08237         218 PEDLAVDHAFECVGGRGSQSAINQIIDYIRPQ-GTIGLMGVSE-YPVPINTRMVLEKGLTLVGSSRST---REDFERAVE  292 (341)
T ss_pred             hhccCCcEEEECCCCCccHHHHHHHHHhCcCC-cEEEEEeecC-CCcccCHHHHhhCceEEEEecccC---HHHHHHHHH
Confidence            112379999999994   45789999999996 9999999754 345667777778999999986432   357899999


Q ss_pred             HHHCC---CCCCCcceeEEeehh---hHHHHHHHhcCCCeeeEEeeC
Q 024295          229 KCKNK---EFKLHQLLTHHVKLE---EIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       229 l~~~g---~~~~~~~~~~~~~~~---~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      ++.++   +.+++++++++|+++   ++.++|+.+.++..+|+||++
T Consensus       293 ~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~~~~~gKvvi~~  339 (341)
T cd08237         293 LLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDLTNSWGKTVMEW  339 (341)
T ss_pred             HHHhCCcccCChHHHhccccccccHHHHHHHHHHHhhcCcceEEEEe
Confidence            99999   346788899999985   556666655554457999874

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.97  E-value=2.2e-30  Score=219.78  Aligned_cols=244  Identities=17%  Similarity=0.169  Sum_probs=195.2

Q ss_pred             cccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEc----CCCCCcccc-cccccchhhhHHHHHHhcCCCCCCe
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKV----DPSIDPSDA-SFLSCGFTTGYGAAWKEAKVEKGSS   87 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~v----p~~~~~~~a-a~~~~~~~~a~~~l~~~~~~~~~~~   87 (269)
                      .|+|-.....+.+ ||+|+++   ++|++|+.++.+.+.++    |++++++++ ++++++++|||+++.+.++++++++
T Consensus        66 ~g~v~~~~~~~~~-GdrV~~~---~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~  141 (325)
T TIGR02825        66 ARVVESKNVALPK-GTIVLAS---PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGET  141 (325)
T ss_pred             EEEEEeCCCCCCC-CCEEEEe---cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCE
Confidence            4555555567888 9999975   46999999999988887    899999887 6788899999999888899999999


Q ss_pred             EEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295           88 VAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  166 (269)
Q Consensus        88 vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  166 (269)
                      |||+|+ |++|++++|+||..|+ +|+++++++++.+.++++|+++++++++  .+++.+.++..++ .++|++||++|+
T Consensus       142 VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~--~~~~~~~~~~~~~-~gvdvv~d~~G~  217 (325)
T TIGR02825       142 VMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKT--VKSLEETLKKASP-DGYDCYFDNVGG  217 (325)
T ss_pred             EEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeccc--cccHHHHHHHhCC-CCeEEEEECCCH
Confidence            999985 9999999999999999 8999999999999999999999999875  1256666666554 489999999998


Q ss_pred             hhHHHHHHHHcccCCcEEEEEccCCCc----ccc--chhHhhhhCCceEEeeeccCCCC---CCcHHHHHHHHHCCCCCC
Q 024295          167 PSLLSEALETTKVGKGKVIVIGVGVDA----MVP--LNVIALACGGRTLKGTTFGGIKT---KSDLPTLLDKCKNKEFKL  237 (269)
Q Consensus       167 ~~~~~~~~~~l~~~~G~~v~~g~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~  237 (269)
                      + .+..++++++++ |+++.+|.....    ..+  .....+.++++++.++....+..   .+.++++++++.+|++++
T Consensus       218 ~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~  295 (325)
T TIGR02825       218 E-FSNTVIGQMKKF-GRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQY  295 (325)
T ss_pred             H-HHHHHHHHhCcC-cEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhhhHHHHHHHHHHHHCCCccc
Confidence            6 679999999996 999999865320    111  12334555788888775432211   245788999999999876


Q ss_pred             CcceeEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295          238 HQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT  268 (269)
Q Consensus       238 ~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~  268 (269)
                      .  +..+|+++++++|++.++++.. +|+|+.
T Consensus       296 ~--~~~~~~l~~~~~A~~~~~~~~~~gkvVv~  325 (325)
T TIGR02825       296 K--EYVIEGFENMPAAFMGMLKGENLGKTIVK  325 (325)
T ss_pred             c--eeccccHHHHHHHHHHHhcCCCCCeEEeC
Confidence            5  4457899999999999988765 588863

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.97  E-value=1.4e-30  Score=219.34  Aligned_cols=239  Identities=25%  Similarity=0.343  Sum_probs=183.5

Q ss_pred             eeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhc------CCCCCCeEEEEcC-
Q 024295           21 SRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEA------KVEKGSSVAVLGL-   93 (269)
Q Consensus        21 ~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~------~~~~~~~vlI~G~-   93 (269)
                      ..+.. |+.+......|+|+||+++|+..++++|++++++++|.++.++.|||.++....      +++++++|||+|+ 
T Consensus        89 ~~~~~-g~~~~~~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggs  167 (347)
T KOG1198|consen   89 GGWVH-GDAVVAFLSSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGS  167 (347)
T ss_pred             cceEe-eeEEeeccCCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCC
Confidence            33444 666666677799999999999999999999999999999999999999999999      8999999999975 


Q ss_pred             ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHH
Q 024295           94 GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA  173 (269)
Q Consensus        94 g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  173 (269)
                      |++|++++|+|+..++ ..++++.++++.++++++|+++++|+++   .++.+.+.+.+ +.+||+||||+|++ .....
T Consensus       168 ggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vvdy~~---~~~~e~~kk~~-~~~~DvVlD~vg~~-~~~~~  241 (347)
T KOG1198|consen  168 GGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVVDYKD---ENVVELIKKYT-GKGVDVVLDCVGGS-TLTKS  241 (347)
T ss_pred             cHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcEeecCCC---HHHHHHHHhhc-CCCccEEEECCCCC-ccccc
Confidence            8999999999999996 4444555899999999999999999998   99999999988 55999999999987 56777


Q ss_pred             HHHcccCCcEEEEEccCCCccccchhH-------hhhhCCceEEeeeccC---CCCCCcHHHHHHHHHCCCCCCCcceeE
Q 024295          174 LETTKVGKGKVIVIGVGVDAMVPLNVI-------ALACGGRTLKGTTFGG---IKTKSDLPTLLDKCKNKEFKLHQLLTH  243 (269)
Q Consensus       174 ~~~l~~~~G~~v~~g~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~g~~~~~~~~~~  243 (269)
                      ..++..+ |+...++.........+..       ........+.+..+..   ....+.++.+.+++++++  +.+.+.+
T Consensus       242 ~~~l~~~-g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ie~gk--ikp~i~~  318 (347)
T KOG1198|consen  242 LSCLLKG-GGGAYIGLVGDELANYKLDDLWQSANGIKLYSLGLKGVNYRWLYFVPSAEYLKALVELIEKGK--IKPVIDS  318 (347)
T ss_pred             hhhhccC-CceEEEEeccccccccccccchhhhhhhhheeeeeeccceeeeeecCCHHHHHHHHHHHHcCc--ccCCcce
Confidence            7788774 6544444333211111111       0000111111111110   123467889999999997  5556889


Q ss_pred             EeehhhHHHHHHHhcCCC-eeeEEeeC
Q 024295          244 HVKLEEIDKAIQLLKQPD-CVKVLITI  269 (269)
Q Consensus       244 ~~~~~~~~~a~~~~~~~~-~~k~vl~~  269 (269)
                      +||++++.+||+.+.++. .+|+++.+
T Consensus       319 ~~p~~~~~ea~~~~~~~~~~GK~vl~~  345 (347)
T KOG1198|consen  319 VYPFSQAKEAFEKLEKSHATGKVVLEK  345 (347)
T ss_pred             eeeHHHHHHHHHHHhhcCCcceEEEEe
Confidence            999999999999887754 47988864

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.97  E-value=8.1e-30  Score=216.07  Aligned_cols=244  Identities=19%  Similarity=0.203  Sum_probs=205.1

Q ss_pred             cccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-
Q 024295           15 LMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-   93 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-   93 (269)
                      .+|+++.++++ ||+|++....|+|++|+++++..++++|+++++++++.+++.+++|++++ ..++++++++|||+|+ 
T Consensus        72 ~~G~~v~~~~~-Gd~V~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~  149 (324)
T cd08292          72 AVGEGVKGLQV-GQRVAVAPVHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAG  149 (324)
T ss_pred             EeCCCCCCCCC-CCEEEeccCCCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccc
Confidence            35778888898 99999876568999999999999999999999999999988899999986 5588999999999986 


Q ss_pred             ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHH
Q 024295           94 GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA  173 (269)
Q Consensus        94 g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  173 (269)
                      |.+|++++|+|+.+|+ +++++..++++.+.++++|+++++++.+   .++.+.+.+.+++.++|++||++|++ ....+
T Consensus       150 g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~i~~~~~~~~~d~v~d~~g~~-~~~~~  224 (324)
T cd08292         150 GAVGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIGPVVSTEQ---PGWQDKVREAAGGAPISVALDSVGGK-LAGEL  224 (324)
T ss_pred             cHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCCEEEcCCC---chHHHHHHHHhCCCCCcEEEECCCCh-hHHHH
Confidence            9999999999999999 8888888888888888899999998876   78888899988888999999999986 67899


Q ss_pred             HHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC-------CCcHHHHHHHHHCCCCCCCcceeEEee
Q 024295          174 LETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT-------KSDLPTLLDKCKNKEFKLHQLLTHHVK  246 (269)
Q Consensus       174 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~g~~~~~~~~~~~~~  246 (269)
                      +++++++ |+++.+|.......+++....+.++.++.++....+..       .+.+..+++++.++.+++.  +.++|+
T Consensus       225 ~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~  301 (324)
T cd08292         225 LSLLGEG-GTLVSFGSMSGEPMQISSGDLIFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLLLP--VEAVFD  301 (324)
T ss_pred             HHhhcCC-cEEEEEecCCCCCCcCCHHHHhhCCCEEEEEEcHHhhhhcCHHHHHHHHHHHHHHHHCCCccCc--cccEec
Confidence            9999996 99999987543334455555666999999887543211       2357889999999997754  467899


Q ss_pred             hhhHHHHHHHhcCCCe-eeEEee
Q 024295          247 LEEIDKAIQLLKQPDC-VKVLIT  268 (269)
Q Consensus       247 ~~~~~~a~~~~~~~~~-~k~vl~  268 (269)
                      ++++.++++.+.++.. +|++++
T Consensus       302 ~~~~~~a~~~~~~~~~~~kvvv~  324 (324)
T cd08292         302 LGDAAKAAAASMRPGRAGKVLLR  324 (324)
T ss_pred             HHHHHHHHHHHHcCCCCceEEeC
Confidence            9999999998876654 588764

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.97  E-value=2.6e-29  Score=216.21  Aligned_cols=228  Identities=36%  Similarity=0.628  Sum_probs=195.8

Q ss_pred             cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295           36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI  115 (269)
Q Consensus        36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~  115 (269)
                      .|+|++|++++++.++++|+++++++++++++.+.+||+++....+++++++|||+|+|++|++++++++..|+++|+++
T Consensus       134 ~g~~~~~~~~~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~  213 (363)
T cd08279         134 LGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAV  213 (363)
T ss_pred             CccceeeEEeccccEEECCCCCChHHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEE
Confidence            58999999999999999999999999999999999999998888999999999999889999999999999999559999


Q ss_pred             cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-cc
Q 024295          116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AM  194 (269)
Q Consensus       116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~  194 (269)
                      ++++++.+.++++|++++++.+.   .++...+++++++.++|+++|+++.......++++++++ |+++.+|.... ..
T Consensus       214 ~~~~~~~~~~~~~g~~~vv~~~~---~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~  289 (363)
T cd08279         214 DPVPEKLELARRFGATHTVNASE---DDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMGPPGET  289 (363)
T ss_pred             cCCHHHHHHHHHhCCeEEeCCCC---ccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcC-CeEEEEecCCCCcc
Confidence            99999999999999999998876   678888888876668999999999666889999999996 99999986542 34


Q ss_pred             ccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEe
Q 024295          195 VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI  267 (269)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl  267 (269)
                      ..++...+..++..+.++.++....++.++++++++.++++++.+.+.+++++++++++|+.+.++...|.||
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  362 (363)
T cd08279         290 VSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI  362 (363)
T ss_pred             cccCHHHHhhcCcEEEEEEecCcCcHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence            4566666666788888876544334567899999999999876555778899999999999998877766665

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.97  E-value=8.1e-30  Score=216.56  Aligned_cols=244  Identities=20%  Similarity=0.199  Sum_probs=197.0

Q ss_pred             cccccCCceeeeecCeEEeeeeccCcccceEeeccC---ceEEcCCCCC--c---ccccccccchhhhHHHHHHhcCCCC
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDAN---YVVKVDPSID--P---SDASFLSCGFTTGYGAAWKEAKVEK   84 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~---~~~~vp~~~~--~---~~aa~~~~~~~~a~~~l~~~~~~~~   84 (269)
                      .|+|-.++.++.+ ||+|++.   ++|++|++++.+   .++++|++++  +   ..++.++++++|||+++.+.+++++
T Consensus        68 ~G~V~~~~~~~~~-Gd~V~~~---~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~  143 (329)
T cd08294          68 AKVIESKNSKFPV-GTIVVAS---FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKA  143 (329)
T ss_pred             EEEEecCCCCCCC-CCEEEee---CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCC
Confidence            4555556667888 9999874   579999999999   9999999988  2   2234577899999999988899999


Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      +++|||+|+ |++|++++|+|+..|+ +|+++++++++.+.++++|+++++++++   .++.+.+++.++ .++|++||+
T Consensus       144 g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~~Ga~~vi~~~~---~~~~~~v~~~~~-~gvd~vld~  218 (329)
T cd08294         144 GETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKELGFDAVFNYKT---VSLEEALKEAAP-DGIDCYFDN  218 (329)
T ss_pred             CCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC---ccHHHHHHHHCC-CCcEEEEEC
Confidence            999999985 9999999999999999 8999999999999999999999999887   788888888776 489999999


Q ss_pred             cCChhHHHHHHHHcccCCcEEEEEccCCC-cc-----ccchhHhhhhCCceEEeeeccCCC--CCCcHHHHHHHHHCCCC
Q 024295          164 TGVPSLLSEALETTKVGKGKVIVIGVGVD-AM-----VPLNVIALACGGRTLKGTTFGGIK--TKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       164 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~  235 (269)
                      +|++ .+..++++++++ |+++.+|.... ..     .......+..+++++.++....+.  ..+.++++++++.++++
T Consensus       219 ~g~~-~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i  296 (329)
T cd08294         219 VGGE-FSSTVLSHMNDF-GRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKL  296 (329)
T ss_pred             CCHH-HHHHHHHhhccC-CEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCC
Confidence            9985 789999999996 99999985422 11     122233455688888887643321  12346788999999997


Q ss_pred             CCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          236 KLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       236 ~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++.  ...+++++++++|++.++++.. +|+|+++
T Consensus       297 ~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvvv~~  329 (329)
T cd08294         297 KYR--EHVTEGFENMPQAFIGMLKGENTGKAIVKV  329 (329)
T ss_pred             cCC--cccccCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            765  3356899999999999988766 6999874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.97  E-value=3.1e-29  Score=214.45  Aligned_cols=244  Identities=28%  Similarity=0.388  Sum_probs=206.7

Q ss_pred             ccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccC--ceEEcCCCCCccccccc
Q 024295           16 MLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDAN--YVVKVDPSIDPSDASFL   65 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~--~~~~vp~~~~~~~aa~~   65 (269)
                      +|+++..+++ ||+|+...                            .+|+|++|+.++++  .++++|++++.++++.+
T Consensus        69 ~G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l  147 (345)
T cd08286          69 VGSAVTNFKV-GDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVML  147 (345)
T ss_pred             eccCccccCC-CCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhc
Confidence            5778778888 99997642                            13889999999987  89999999999999999


Q ss_pred             ccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHH
Q 024295           66 SCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSIS  145 (269)
Q Consensus        66 ~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  145 (269)
                      ++.+++||+++....++++++++||+|+|++|.+++|+++..|..+|+++++++++.+.++++|++.++++.+   .++.
T Consensus       148 ~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~---~~~~  224 (345)
T cd08286         148 SDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAK---GDAI  224 (345)
T ss_pred             cchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceecccc---ccHH
Confidence            9999999998777889999999999999999999999999999448999988889999999999999999876   6787


Q ss_pred             HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHH
Q 024295          146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPT  225 (269)
Q Consensus       146 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (269)
                      +.+.++.++.++|++||++|.+..+..+++.++++ |+++.+|.... ..++++..++.+++++.+....    .+.+..
T Consensus       225 ~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  298 (345)
T cd08286         225 EQVLELTDGRGVDVVIEAVGIPATFELCQELVAPG-GHIANVGVHGK-PVDLHLEKLWIKNITITTGLVD----TNTTPM  298 (345)
T ss_pred             HHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-cEEEEecccCC-CCCcCHHHHhhcCcEEEeecCc----hhhHHH
Confidence            88888877778999999998777888999999996 99999996543 4556666656689999875432    246888


Q ss_pred             HHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCC---CeeeEEeeC
Q 024295          226 LLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP---DCVKVLITI  269 (269)
Q Consensus       226 ~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~k~vl~~  269 (269)
                      ++++++++.+++.+++++++++++++++++.+...   ...|++|++
T Consensus       299 ~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~  345 (345)
T cd08286         299 LLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF  345 (345)
T ss_pred             HHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence            99999999987766678899999999999998875   346999975

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.97  E-value=1.6e-29  Score=216.24  Aligned_cols=244  Identities=20%  Similarity=0.241  Sum_probs=189.3

Q ss_pred             cccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCccc----ccccccchhhhHHHHHHhcCCCCC--CeE
Q 024295           15 LMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD----ASFLSCGFTTGYGAAWKEAKVEKG--SSV   88 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~----aa~~~~~~~~a~~~l~~~~~~~~~--~~v   88 (269)
                      .+|+++.++++ ||+|+++.  ++|+||++++++.++++|+++++.+    ++.++.+++|||+++.+.++++++  ++|
T Consensus        82 ~vG~~v~~~~~-Gd~V~~~~--~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~V  158 (345)
T cd08293          82 VEESKHQKFAV-GDIVTSFN--WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTM  158 (345)
T ss_pred             EeccCCCCCCC-CCEEEecC--CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEE
Confidence            35788888999 99998753  6799999999999999999865433    445677899999998888888877  999


Q ss_pred             EEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295           89 AVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  166 (269)
Q Consensus        89 lI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  166 (269)
                      ||+|+ |++|++++|+|+..|+++|+++++++++.+.+++ +|+++++++.+   .++.+.++++++ .++|++||++|+
T Consensus       159 lI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~---~~~~~~i~~~~~-~gvd~vid~~g~  234 (345)
T cd08293         159 VVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT---DNVAERLRELCP-EGVDVYFDNVGG  234 (345)
T ss_pred             EEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC---CCHHHHHHHHCC-CCceEEEECCCc
Confidence            99986 9999999999999998679999999999999876 99999999886   788888888876 499999999998


Q ss_pred             hhHHHHHHHHcccCCcEEEEEccCCC--cc----ccch--hHhhh-hCCceEEeeeccCCCC--CCcHHHHHHHHHCCCC
Q 024295          167 PSLLSEALETTKVGKGKVIVIGVGVD--AM----VPLN--VIALA-CGGRTLKGTTFGGIKT--KSDLPTLLDKCKNKEF  235 (269)
Q Consensus       167 ~~~~~~~~~~l~~~~G~~v~~g~~~~--~~----~~~~--~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~  235 (269)
                      . .+..++++++++ |+++.+|....  ..    ..+.  ...+. .+++++..........  .+.++++++++.++++
T Consensus       235 ~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i  312 (345)
T cd08293         235 E-ISDTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQLSQWVKEGKL  312 (345)
T ss_pred             H-HHHHHHHHhccC-CEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEeeccHhHHHHHHHHHHHHHHCCCc
Confidence            6 679999999996 99999985321  11    1111  11122 2344443332211111  1346778889999997


Q ss_pred             CCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          236 KLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       236 ~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++.  +...++++++++||+.+.++.. +|+|+++
T Consensus       313 ~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvvl~~  345 (345)
T cd08293         313 KVK--ETVYEGLENAGEAFQSMMNGGNIGKQIVKV  345 (345)
T ss_pred             cce--eEEeecHHHHHHHHHHHhcCCCCCeEEEEC
Confidence            754  4445799999999999988765 6999875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=5.2e-29  Score=214.73  Aligned_cols=227  Identities=30%  Similarity=0.470  Sum_probs=193.9

Q ss_pred             cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295           36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI  115 (269)
Q Consensus        36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~  115 (269)
                      .|+|++|+.++.+.++++|+++++.+++.+++++++||+++.....++++++|||+|+|++|++++++|+..|+++++++
T Consensus       139 ~g~~~~~~~~~~~~~~~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~  218 (367)
T cd08263         139 MGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAV  218 (367)
T ss_pred             CCcceeEEEechhhEEECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEE
Confidence            58999999999999999999999999999999999999998888888999999999889999999999999999559999


Q ss_pred             cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-cc
Q 024295          116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AM  194 (269)
Q Consensus       116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~  194 (269)
                      +.++++.+.++++|++.++++++   .++.+.+++..++.++|++||++++......++++++++ |+++.+|.... ..
T Consensus       219 ~~s~~~~~~~~~~g~~~v~~~~~---~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~  294 (367)
T cd08263         219 DVRDEKLAKAKELGATHTVNAAK---EDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGAT  294 (367)
T ss_pred             eCCHHHHHHHHHhCCceEecCCc---ccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcC-CEEEEEccCCCCCc
Confidence            88899999999999999999876   778888888877678999999999865778999999996 99999986543 23


Q ss_pred             ccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295          195 VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT  268 (269)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~  268 (269)
                      ..++...++.++.++.++...  ..++.++.+++++.++++++.+.++++++++++.++++.++++.. +|+|+.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~  367 (367)
T cd08263         295 AEIPITRLVRRGIKIIGSYGA--RPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE  367 (367)
T ss_pred             cccCHHHHhhCCeEEEecCCC--CcHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence            455666665688888875322  123578899999999998765557788999999999999988775 588874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=5.2e-29  Score=212.04  Aligned_cols=236  Identities=20%  Similarity=0.344  Sum_probs=200.3

Q ss_pred             ccCCceeeeecCeEEee----------------------------eeccCcccceEeeccCceEEcCCCCCccccccccc
Q 024295           16 MLDSTSRMSVRGQKLYH----------------------------IFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSC   67 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~----------------------------~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~   67 (269)
                      +|+++.++++ ||+|+.                            +...|+++||+.++.+.++++|+++++++++.+++
T Consensus        69 vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~  147 (333)
T cd08296          69 VGEGVSRWKV-GDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLC  147 (333)
T ss_pred             ECCCCccCCC-CCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeCCCCCCHHHhhhhhh
Confidence            5777778888 999975                            22258999999999999999999999999999999


Q ss_pred             chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295           68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL  147 (269)
Q Consensus        68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  147 (269)
                      ++.+||+++.. .+++++++|||+|+|++|++++++|+.+|+ +|+++++++++.+.++++|+++++++.+   .++.+.
T Consensus       148 ~~~ta~~~~~~-~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~---~~~~~~  222 (333)
T cd08296         148 AGVTTFNALRN-SGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDTSK---EDVAEA  222 (333)
T ss_pred             hhHHHHHHHHh-cCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcEEecCCC---ccHHHH
Confidence            99999998754 589999999999999999999999999999 8999999999999999999999998876   667777


Q ss_pred             HHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHH
Q 024295          148 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLL  227 (269)
Q Consensus       148 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (269)
                      ++++  + ++|+++|++|.+..+..++++++++ |+++.+|... ...+++...++.+++++.++....   .+++..++
T Consensus       223 ~~~~--~-~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~  294 (333)
T cd08296         223 LQEL--G-GAKLILATAPNAKAISALVGGLAPR-GKLLILGAAG-EPVAVSPLQLIMGRKSIHGWPSGT---ALDSEDTL  294 (333)
T ss_pred             HHhc--C-CCCEEEECCCchHHHHHHHHHcccC-CEEEEEecCC-CCCCcCHHHHhhcccEEEEeCcCC---HHHHHHHH
Confidence            7765  2 7999999998666889999999996 9999999765 345666666777999999986432   35688899


Q ss_pred             HHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295          228 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT  268 (269)
Q Consensus       228 ~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~  268 (269)
                      +++.+++++  +.+ ++++++++.+||+.++++.. +|+|++
T Consensus       295 ~~~~~~~l~--~~v-~~~~~~~~~~a~~~~~~~~~~gk~v~~  333 (333)
T cd08296         295 KFSALHGVR--PMV-ETFPLEKANEAYDRMMSGKARFRVVLT  333 (333)
T ss_pred             HHHHhCCCC--ceE-EEEEHHHHHHHHHHHHCCCCceeEEeC
Confidence            999888754  344 57999999999999988776 699874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.97  E-value=3.6e-29  Score=217.57  Aligned_cols=244  Identities=17%  Similarity=0.219  Sum_probs=201.9

Q ss_pred             cccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295           15 LMLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLS   66 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~   66 (269)
                      .+|+++..+.+ ||+|+...                            ..|+|++|++++...++++|+++++++++.++
T Consensus        95 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~~~aa~l~  173 (393)
T cd08246          95 AVGEGVKNWKV-GDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEAAAYM  173 (393)
T ss_pred             EeCCCCCcCCC-CCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCHHHHhhhc
Confidence            35778888888 99998653                            24899999999999999999999999999999


Q ss_pred             cchhhhHHHHHHh--cCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCC---
Q 024295           67 CGFTTGYGAAWKE--AKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEP---  140 (269)
Q Consensus        67 ~~~~~a~~~l~~~--~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~---  140 (269)
                      +++++||+++...  ++++++++|+|+|+ |++|++++++++.+|+ +++++++++++.+.++++|+++++++++.+   
T Consensus       174 ~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~  252 (393)
T cd08246         174 LVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVSSEEKAEYCRALGAEGVINRRDFDHWG  252 (393)
T ss_pred             ccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCCEEEccccccccc
Confidence            9999999998654  78899999999996 9999999999999999 788888899999999999999999875310   


Q ss_pred             ----------------CccHHHHHHhhhCCC-CccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh
Q 024295          141 ----------------NKSISELVKGITHGM-GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA  203 (269)
Q Consensus       141 ----------------~~~~~~~i~~~~~~~-~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~  203 (269)
                                      ...+.+.+.+++++. ++|++||++|+. .+..++++++++ |+++.+|.......+++...+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~l~  330 (393)
T cd08246         253 VLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRA-TFPTSVFVCDRG-GMVVICAGTTGYNHTYDNRYLW  330 (393)
T ss_pred             ccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchH-hHHHHHHHhccC-CEEEEEcccCCCCCCCcHHHHh
Confidence                            013567788888877 899999999874 788999999996 9999998654323445556666


Q ss_pred             hCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCC-Ce-eeEEe
Q 024295          204 CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP-DC-VKVLI  267 (269)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~-~k~vl  267 (269)
                      .++.++.+++..+   .+.+.+++++++++.+.  +.++++|++++++++++.+.++ .. +|+++
T Consensus       331 ~~~~~i~g~~~~~---~~~~~~~~~~~~~~~l~--~~~~~~~~l~~~~~a~~~~~~~~~~~gkvvv  391 (393)
T cd08246         331 MRQKRIQGSHFAN---DREAAEANRLVMKGRID--PCLSKVFSLDETPDAHQLMHRNQHHVGNMAV  391 (393)
T ss_pred             hheeEEEecccCc---HHHHHHHHHHHHcCCce--eeeeEEEeHHHHHHHHHHHHhCccccceEEE
Confidence            6888888876543   35788999999999865  3477899999999999999877 55 58775

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.97  E-value=2.1e-29  Score=200.32  Aligned_cols=240  Identities=20%  Similarity=0.238  Sum_probs=198.9

Q ss_pred             cCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcc--cccccccchhhhHHHHHHhcCCCCCCeEEEEcC-
Q 024295           17 LDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS--DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-   93 (269)
Q Consensus        17 g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~--~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-   93 (269)
                      .+....|++ ||.|.+..   +|+||..++.+.+.|++++.-.-  ....+.++..|||.+|.+.++.++|++|+|.++ 
T Consensus        85 ~S~~~~f~~-GD~V~~~~---GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAa  160 (340)
T COG2130          85 ASNHPGFQP-GDIVVGVS---GWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAA  160 (340)
T ss_pred             ecCCCCCCC-CCEEEecc---cceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecc
Confidence            456677999 99998764   69999999999999998543222  223367899999999999999999999999986 


Q ss_pred             ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHH
Q 024295           94 GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSE  172 (269)
Q Consensus        94 g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~  172 (269)
                      |++|..+.|+||..|+ +|++++.++||.+++++ +|.|.++|++.   +++.+.+.+.+++ ++|+.||++|++ .++.
T Consensus       161 GaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk~---~d~~~~L~~a~P~-GIDvyfeNVGg~-v~DA  234 (340)
T COG2130         161 GAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKA---EDFAQALKEACPK-GIDVYFENVGGE-VLDA  234 (340)
T ss_pred             cccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecCc---ccHHHHHHHHCCC-CeEEEEEcCCch-HHHH
Confidence            9999999999999999 99999999999999988 99999999998   8999999999997 999999999998 8899


Q ss_pred             HHHHcccCCcEEEEEccCCC---ccccc---hhHhhhhCCceEEeeec-cCCCC--CCcHHHHHHHHHCCCCCCCcceeE
Q 024295          173 ALETTKVGKGKVIVIGVGVD---AMVPL---NVIALACGGRTLKGTTF-GGIKT--KSDLPTLLDKCKNKEFKLHQLLTH  243 (269)
Q Consensus       173 ~~~~l~~~~G~~v~~g~~~~---~~~~~---~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~l~~~g~~~~~~~~~~  243 (269)
                      .+..++. ++|++.+|..+.   ...+.   ....++.+.+++.|+-. ..+..  .+..+++.+|+++|+++.+.  +.
T Consensus       235 v~~~ln~-~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~e--ti  311 (340)
T COG2130         235 VLPLLNL-FARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRE--TI  311 (340)
T ss_pred             HHHhhcc-ccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEe--ee
Confidence            9999999 499999996554   11221   22334557888888876 33321  14577899999999988874  44


Q ss_pred             EeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          244 HVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       244 ~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +-.+|++++||.-|.+++. +|.|+++
T Consensus       312 ~dGlEnaP~Af~gLl~G~N~GK~vvKv  338 (340)
T COG2130         312 VDGLENAPEAFIGLLSGKNFGKLVVKV  338 (340)
T ss_pred             hhhhhccHHHHHHHhcCCccceEEEEe
Confidence            5679999999998888776 6999874

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.97  E-value=7.1e-29  Score=211.75  Aligned_cols=241  Identities=22%  Similarity=0.337  Sum_probs=202.8

Q ss_pred             ccccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLS   66 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~   66 (269)
                      -.+|.++..+.+ ||+|++..                           .+|+|++|+.+++++++++|+++++++++.++
T Consensus        70 ~~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~  148 (340)
T cd05284          70 EEVGSGVDGLKE-GDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLA  148 (340)
T ss_pred             EEeCCCCCcCcC-CCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEECCCCCCHHHhhhhc
Confidence            335778888999 99998653                           25899999999999999999999999999999


Q ss_pred             cchhhhHHHHHHh-cCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccH
Q 024295           67 CGFTTGYGAAWKE-AKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSI  144 (269)
Q Consensus        67 ~~~~~a~~~l~~~-~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  144 (269)
                      +.+.|||+++... ..+.++++|||+|+|++|++++++|+..| . +|+++++++++.+.++++|+++++++++   . +
T Consensus       149 ~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~-~  223 (340)
T cd05284         149 DAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPA-TVIAVDRSEEALKLAERLGADHVLNASD---D-V  223 (340)
T ss_pred             chHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHhCCcEEEcCCc---c-H
Confidence            9999999998765 46888999999998889999999999999 6 8999998999999999999999998876   5 8


Q ss_pred             HHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHH
Q 024295          145 SELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLP  224 (269)
Q Consensus       145 ~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (269)
                      .+++++++++.++|+++|++|++.....++++++++ |+++.+|....  .+++....+.+++++.++...   .++.+.
T Consensus       224 ~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~  297 (340)
T cd05284         224 VEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKG-GRYVIVGYGGH--GRLPTSDLVPTEISVIGSLWG---TRAELV  297 (340)
T ss_pred             HHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEEcCCCC--CccCHHHhhhcceEEEEEecc---cHHHHH
Confidence            888888877778999999999766889999999996 99999986542  344444445689999887643   236788


Q ss_pred             HHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          225 TLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       225 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      .+++++.++.+++   ..++|++++++++++.++++.. +|+++.+
T Consensus       298 ~~~~~l~~g~l~~---~~~~~~~~~~~~a~~~~~~~~~~gkvv~~~  340 (340)
T cd05284         298 EVVALAESGKVKV---EITKFPLEDANEALDRLREGRVTGRAVLVP  340 (340)
T ss_pred             HHHHHHHhCCCCc---ceEEEeHHHHHHHHHHHHcCCccceEEecC
Confidence            9999999998764   3457999999999999988766 5888764

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.97  E-value=1.7e-28  Score=212.62  Aligned_cols=226  Identities=29%  Similarity=0.430  Sum_probs=189.6

Q ss_pred             cCcccceEeeccC--ceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEE
Q 024295           36 CSTWSEYMVIDAN--YVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKII  113 (269)
Q Consensus        36 ~g~~a~~~~v~~~--~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~  113 (269)
                      +|+|++|++++++  .++++|+++++++++.+++.+++||+++ ..++++++++|||+|+|++|++++++|+..|+.+|+
T Consensus       135 ~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi  213 (386)
T cd08283         135 AGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVI  213 (386)
T ss_pred             CCeeEEEEEcccccCeEEECCCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence            4899999999987  8999999999999999999999999998 788999999999999999999999999999985699


Q ss_pred             EEcCCcchHHHHHhCCCceeeCCCCCCCc-cHHHHHHhhhCCCCccEEEEccCCh---------------------hHHH
Q 024295          114 GIDKNPWKKEKGKAFGMTDFINPDDEPNK-SISELVKGITHGMGVDYCFECTGVP---------------------SLLS  171 (269)
Q Consensus       114 ~~~~~~~~~~~~~~~g~~~v~~~~~~~~~-~~~~~i~~~~~~~~~d~v~d~~g~~---------------------~~~~  171 (269)
                      ++++++++.+.+++++...++++.+   . ++.+.+++++++.++|++||++|+.                     ..+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~~vi~~~~---~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (386)
T cd08283         214 AIDRVPERLEMARSHLGAETINFEE---VDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALR  290 (386)
T ss_pred             EEcCCHHHHHHHHHcCCcEEEcCCc---chHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHH
Confidence            9999999999999985446777765   5 4888888888777899999999752                     3678


Q ss_pred             HHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHH
Q 024295          172 EALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEID  251 (269)
Q Consensus       172 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~  251 (269)
                      .++++++++ |+++.+|........++....+.++.++.+....   ..+.+.++++++.++++...++++++++++++.
T Consensus       291 ~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~  366 (386)
T cd08283         291 EAIQAVRKG-GTVSIIGVYGGTVNKFPIGAAMNKGLTLRMGQTH---VQRYLPRLLELIESGELDPSFIITHRLPLEDAP  366 (386)
T ss_pred             HHHHHhccC-CEEEEEcCCCCCcCccCHHHHHhCCcEEEeccCC---chHHHHHHHHHHHcCCCChhHceEEEecHHHHH
Confidence            899999996 9999998765323345554556688988887532   236788999999999987766677889999999


Q ss_pred             HHHHHhcCCC-e-eeEEeeC
Q 024295          252 KAIQLLKQPD-C-VKVLITI  269 (269)
Q Consensus       252 ~a~~~~~~~~-~-~k~vl~~  269 (269)
                      ++|+.+.++. . +|++|++
T Consensus       367 ~a~~~~~~~~~~~~k~~~~~  386 (386)
T cd08283         367 EAYKIFDKKEDGCIKVVLKP  386 (386)
T ss_pred             HHHHHHHhCCCCeEEEEecC
Confidence            9999988765 3 6999874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=3.4e-28  Score=207.36  Aligned_cols=241  Identities=26%  Similarity=0.460  Sum_probs=202.0

Q ss_pred             ccCCceeeeecCeEEeee---------------------------eccCcccceEeeccCceEEcCCCCCcccccccccc
Q 024295           16 MLDSTSRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCG   68 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~   68 (269)
                      +|+++..+++ ||+|++.                           ...|+|++|+.++++ ++++|+++++++++++ ..
T Consensus        68 ~G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~  144 (337)
T cd08261          68 VGEGVAGLKV-GDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EP  144 (337)
T ss_pred             eCCCCCCCCC-CCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECCCCCCHHHhhhh-ch
Confidence            5677777888 9999862                           235899999999999 9999999999999877 57


Q ss_pred             hhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHH
Q 024295           69 FTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELV  148 (269)
Q Consensus        69 ~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  148 (269)
                      ++++++++ ...+++++++|||+|+|.+|.+++|+|+.+|+ +|+++.+++++.+.++++|+++++++.+   .++.+.+
T Consensus       145 ~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~v~~~~~---~~~~~~l  219 (337)
T cd08261         145 LAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGD---EDVAARL  219 (337)
T ss_pred             HHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCEEecCcc---cCHHHHH
Confidence            88888876 77899999999999889999999999999999 8999988999999999999999999886   6788888


Q ss_pred             HhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHH
Q 024295          149 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLD  228 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (269)
                      .+.+++.++|+++|++|+...+..++++++++ |+++.+|.... ...++...+..+++++.+...   ...+.++++++
T Consensus       220 ~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~i~~g~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  294 (337)
T cd08261         220 RELTDGEGADVVIDATGNPASMEEAVELVAHG-GRVVLVGLSKG-PVTFPDPEFHKKELTILGSRN---ATREDFPDVID  294 (337)
T ss_pred             HHHhCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEcCCCC-CCccCHHHHHhCCCEEEEecc---CChhhHHHHHH
Confidence            88877768999999998766889999999996 99999986552 334455556667888877632   23457889999


Q ss_pred             HHHCCCCCCCcceeEEeehhhHHHHHHHhcCCC-e-eeEEeeC
Q 024295          229 KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD-C-VKVLITI  269 (269)
Q Consensus       229 l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~-~k~vl~~  269 (269)
                      ++.++.+++.+.+..+++++++.++++.+.+++ . .|+|++|
T Consensus       295 l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~  337 (337)
T cd08261         295 LLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF  337 (337)
T ss_pred             HHHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence            999999876334677899999999999998873 4 6999876

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PRK10083 putative oxidoreductase; Provisional

Probab=99.97  E-value=2.3e-28  Score=208.48  Aligned_cols=241  Identities=17%  Similarity=0.269  Sum_probs=195.3

Q ss_pred             cccCCceeeeecCeEEe---------------------------eeeccCcccceEeeccCceEEcCCCCCccccccccc
Q 024295           15 LMLDSTSRMSVRGQKLY---------------------------HIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSC   67 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~---------------------------~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~   67 (269)
                      .+|+++..+++ ||+|+                           ++..+|+|+||+.++.+.++++|+++++++++ +..
T Consensus        67 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~  144 (339)
T PRK10083         67 AVGEGVDAARI-GERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVE  144 (339)
T ss_pred             EECCCCccCCC-CCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCCCCHHHHh-hhc
Confidence            35778888888 99997                           33335899999999999999999999998876 446


Q ss_pred             chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHH-cCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHH
Q 024295           68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARM-HGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISE  146 (269)
Q Consensus        68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~-~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  146 (269)
                      ++.++++ +...++++++++|+|+|+|++|++++|+++. +|++.++++++++++.+.++++|+++++++++   .++.+
T Consensus       145 ~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~---~~~~~  220 (339)
T PRK10083        145 PFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQ---EPLGE  220 (339)
T ss_pred             hHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc---ccHHH
Confidence            7888885 5577899999999999999999999999996 69967888999999999999999999998876   66666


Q ss_pred             HHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHH
Q 024295          147 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTL  226 (269)
Q Consensus       147 ~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (269)
                      .+...  +.++|++||++|.+..+..++++++++ |+++.+|.... ...++...+..+++++.+...    ..+.++++
T Consensus       221 ~~~~~--g~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  292 (339)
T PRK10083        221 ALEEK--GIKPTLIIDAACHPSILEEAVTLASPA-ARIVLMGFSSE-PSEIVQQGITGKELSIFSSRL----NANKFPVV  292 (339)
T ss_pred             HHhcC--CCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC-CceecHHHHhhcceEEEEEec----ChhhHHHH
Confidence            66432  335679999999776889999999996 99999997653 333444444557788777653    23678999


Q ss_pred             HHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCC-e-eeEEeeC
Q 024295          227 LDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD-C-VKVLITI  269 (269)
Q Consensus       227 ~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~-~k~vl~~  269 (269)
                      ++++.++++++.++++++|++++++++++.+.++. . +|+++++
T Consensus       293 ~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~  337 (339)
T PRK10083        293 IDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTF  337 (339)
T ss_pred             HHHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEec
Confidence            99999999876555788999999999999987543 3 6999865

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.97  E-value=2.8e-28  Score=208.90  Aligned_cols=243  Identities=23%  Similarity=0.296  Sum_probs=204.0

Q ss_pred             cccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCccccccccc
Q 024295           15 LMLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSC   67 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~   67 (269)
                      .+|+++.++.+ ||+|+++.                           ..|++++|+.++.+.++++|+++++++++.+.+
T Consensus        80 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~~  158 (350)
T cd08240          80 AVGPDAADVKV-GDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLAC  158 (350)
T ss_pred             eeCCCCCCCCC-CCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCCCCCCHHHeehhhc
Confidence            35778888888 99998651                           358999999999999999999999999999999


Q ss_pred             chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295           68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL  147 (269)
Q Consensus        68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  147 (269)
                      .+.+||+++.....++++++|||+|+|++|++++|+|+..|+++|+++++++++.+.++++|++.+++.++   ..+.+.
T Consensus       159 ~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~  235 (350)
T cd08240         159 SGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADVVVNGSD---PDAAKR  235 (350)
T ss_pred             hhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCcEEecCCC---ccHHHH
Confidence            99999999877777778999999998999999999999999978999998999999999999988888876   677777


Q ss_pred             HHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHH
Q 024295          148 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLL  227 (269)
Q Consensus       148 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (269)
                      +.+..++ ++|++||++|.+.....++++++++ |+++.+|.... ....+.....+++.++.++....   .+++.+++
T Consensus       236 ~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~  309 (350)
T cd08240         236 IIKAAGG-GVDAVIDFVNNSATASLAFDILAKG-GKLVLVGLFGG-EATLPLPLLPLRALTIQGSYVGS---LEELRELV  309 (350)
T ss_pred             HHHHhCC-CCcEEEECCCCHHHHHHHHHHhhcC-CeEEEECCCCC-CCcccHHHHhhcCcEEEEcccCC---HHHHHHHH
Confidence            8887777 8999999999766889999999996 99999987653 22333344455888888776443   26788999


Q ss_pred             HHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          228 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       228 ~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++++.++..  ....+++++++++++.+..+.. +|+++++
T Consensus       310 ~ll~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~  350 (350)
T cd08240         310 ALAKAGKLKPI--PLTERPLSDVNDALDDLKAGKVVGRAVLKP  350 (350)
T ss_pred             HHHHcCCCccc--eeeEEcHHHHHHHHHHHHcCCccceEEecC
Confidence            99999987643  5668999999999999887765 6988864

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.97  E-value=3.4e-28  Score=207.91  Aligned_cols=245  Identities=28%  Similarity=0.377  Sum_probs=202.4

Q ss_pred             ccccCCceeeeecCeEEeeee-------------------------------ccCcccceEeeccC--ceEEcCCCCCcc
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF-------------------------------SCSTWSEYMVIDAN--YVVKVDPSIDPS   60 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~-------------------------------~~g~~a~~~~v~~~--~~~~vp~~~~~~   60 (269)
                      -.+|+++.++++ ||+|++..                               .+|+|++|++++++  .++++|++++++
T Consensus        66 ~~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~  144 (344)
T cd08284          66 VEVGPEVRTLKV-GDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDE  144 (344)
T ss_pred             EeeCCCccccCC-CCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCHH
Confidence            346778888888 99998643                               14889999999865  999999999999


Q ss_pred             cccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCC
Q 024295           61 DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEP  140 (269)
Q Consensus        61 ~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~  140 (269)
                      +++.++++++|||+++. ..+++++++|||+|+|++|++++++++.+|+.+|+++++++++.+.++++|+. .++.+.  
T Consensus       145 ~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~--  220 (344)
T cd08284         145 AALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE-PINFED--  220 (344)
T ss_pred             HhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe-EEecCC--
Confidence            99999999999999985 47889999999999899999999999999975799998888999999999975 456655  


Q ss_pred             CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCC
Q 024295          141 NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTK  220 (269)
Q Consensus       141 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (269)
                       .++.+.+.+++++.++|++||+++++......+++++++ |+++.+|..............+.++.++.+...   ..+
T Consensus       221 -~~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  295 (344)
T cd08284         221 -AEPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPG-GVISSVGVHTAEEFPFPGLDAYNKNLTLRFGRC---PVR  295 (344)
T ss_pred             -cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccC-CEEEEECcCCCCCccccHHHHhhcCcEEEEecC---Ccc
Confidence             668888888887779999999999766889999999996 999999976532333444455568888875421   234


Q ss_pred             CcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEee
Q 024295          221 SDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT  268 (269)
Q Consensus       221 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~  268 (269)
                      +.+.++++++.++++++.+++.+++++++++++++.+.++..+|+|++
T Consensus       296 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~Vi~  343 (344)
T cd08284         296 SLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKVLKVVLD  343 (344)
T ss_pred             hhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCceEEEec
Confidence            679999999999998765557788999999999998887655888875

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.97  E-value=2.3e-28  Score=209.19  Aligned_cols=245  Identities=31%  Similarity=0.429  Sum_probs=201.1

Q ss_pred             cccCCceeeeecCeEEeee------------------------------eccCcccceEeeccC--ceEEcCCCCCcccc
Q 024295           15 LMLDSTSRMSVRGQKLYHI------------------------------FSCSTWSEYMVIDAN--YVVKVDPSIDPSDA   62 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~------------------------------~~~g~~a~~~~v~~~--~~~~vp~~~~~~~a   62 (269)
                      .+|+++.++++ ||+|++.                              ..+|+|++|++++++  +++++|++++++++
T Consensus        68 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~a  146 (347)
T cd05278          68 EVGSDVKRLKP-GDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDA  146 (347)
T ss_pred             EECCCccccCC-CCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHH
Confidence            35788888999 9999862                              235899999999987  89999999999999


Q ss_pred             cccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCc
Q 024295           63 SFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNK  142 (269)
Q Consensus        63 a~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  142 (269)
                      +.+++++++||+++ ...+++++++|||.|+|++|++++|+|+.+|..+++++++++++.+.++++|++.++++++   .
T Consensus       147 a~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~---~  222 (347)
T cd05278         147 LMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKN---G  222 (347)
T ss_pred             hhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCc---c
Confidence            99999999999997 6788999999999888999999999999999657888888888899999999999998876   6


Q ss_pred             cHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCcc-ccchhHhhhhCCceEEeeeccCCCCCC
Q 024295          143 SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAM-VPLNVIALACGGRTLKGTTFGGIKTKS  221 (269)
Q Consensus       143 ~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (269)
                      ++.+.+++.+++.++|++||++++...+..++++++++ |+++.+|...... .... ..++.++.++.++....   .+
T Consensus       223 ~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~  297 (347)
T cd05278         223 DIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPG-GTIANVGVYGKPDPLPLL-GEWFGKNLTFKTGLVPV---RA  297 (347)
T ss_pred             hHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcC-CEEEEEcCCCCCcccCcc-chhhhceeEEEeeccCc---hh
Confidence            78888888777668999999998755889999999996 9999998654311 1111 12334778877754322   46


Q ss_pred             cHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe--eeEEeeC
Q 024295          222 DLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC--VKVLITI  269 (269)
Q Consensus       222 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~k~vl~~  269 (269)
                      .++++++++.++.+++.+.+..++++++++++++.+..+..  .|+|+++
T Consensus       298 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~  347 (347)
T cd05278         298 RMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP  347 (347)
T ss_pred             HHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence            78899999999998765556778999999999999877654  5888864

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=3.8e-28  Score=207.32  Aligned_cols=243  Identities=22%  Similarity=0.377  Sum_probs=194.6

Q ss_pred             cccCCcee-eeecCeEEeeee-----------------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHH
Q 024295           15 LMLDSTSR-MSVRGQKLYHIF-----------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAA   76 (269)
Q Consensus        15 ~vg~~~~~-~~~~Gd~v~~~~-----------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l   76 (269)
                      .+|+++.+ +++ ||+|+++.                 ..|+|+||++++.+.++++|+++++++++ ++.++++||++ 
T Consensus        77 ~vG~~v~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~-  153 (341)
T cd08262          77 DYGPGTERKLKV-GTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHA-  153 (341)
T ss_pred             EeCCCCcCCCCC-CCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh-hhhhHHHHHHH-
Confidence            35677776 888 99999762                 35899999999999999999999999887 56688999998 


Q ss_pred             HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHH---HHHhhhC
Q 024295           77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISE---LVKGITH  153 (269)
Q Consensus        77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~---~i~~~~~  153 (269)
                      ...++++++++|||+|+|++|.+++|+++.+|++.++++++++++.+.++++|+++++++++   .+..+   .+....+
T Consensus       154 ~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~---~~~~~~~~~~~~~~~  230 (341)
T cd08262         154 VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAA---DSPFAAWAAELARAG  230 (341)
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCC---cCHHHHHHHHHHHhC
Confidence            47889999999999998999999999999999966888888899999999999998998765   32221   3444455


Q ss_pred             CCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCC
Q 024295          154 GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNK  233 (269)
Q Consensus       154 ~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  233 (269)
                      +.++|+++|++|+...+..++++++++ |+++.+|.... ...+.......++.++.++...   ..+.+.++++++.++
T Consensus       231 ~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~g  305 (341)
T cd08262         231 GPKPAVIFECVGAPGLIQQIIEGAPPG-GRIVVVGVCME-SDNIEPALAIRKELTLQFSLGY---TPEEFADALDALAEG  305 (341)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCC-CCccCHHHHhhcceEEEEEecc---cHHHHHHHHHHHHcC
Confidence            568999999998755778899999996 99999987643 1222322334477777755422   234788999999999


Q ss_pred             CCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295          234 EFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT  268 (269)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~  268 (269)
                      .+.+.+++.+++++++++++++.+.++.. +|+|++
T Consensus       306 ~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~  341 (341)
T cd08262         306 KVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD  341 (341)
T ss_pred             CCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence            98866667889999999999999988766 688874

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.97  E-value=3.9e-28  Score=205.72  Aligned_cols=244  Identities=18%  Similarity=0.171  Sum_probs=203.4

Q ss_pred             ccCCceeeeecCeEEeeeec--cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC
Q 024295           16 MLDSTSRMSVRGQKLYHIFS--CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL   93 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~~--~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~   93 (269)
                      +|+++..+++ ||+|++...  .|+|++|+.++.+.++++|+++++++++.+++.+++|| ++...++++++++|+|+|+
T Consensus        74 ~G~~v~~~~~-Gd~V~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~-~~~~~~~~~~~~~vlI~g~  151 (324)
T cd08244          74 VGPGVDPAWL-GRRVVAHTGRAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTAL-GLLDLATLTPGDVVLVTAA  151 (324)
T ss_pred             eCCCCCCCCC-CCEEEEccCCCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHH-HHHHhcCCCCCCEEEEEcC
Confidence            5677777888 999998752  58999999999999999999999999999999999995 5677889999999999985


Q ss_pred             -ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHH
Q 024295           94 -GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSE  172 (269)
Q Consensus        94 -g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~  172 (269)
                       |++|++++++|+.+|+ +|+++++++++.+.++++|++++++..+   .++.+.+.+..++.++|+++|++|++ ....
T Consensus       152 ~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~g~~-~~~~  226 (324)
T cd08244         152 AGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGADVAVDYTR---PDWPDQVREALGGGGVTVVLDGVGGA-IGRA  226 (324)
T ss_pred             CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEecCC---ccHHHHHHHHcCCCCceEEEECCChH-hHHH
Confidence             9999999999999999 8999999999999999999988888876   77888888877777899999999987 5689


Q ss_pred             HHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC---CCcHHHHHHHHHCCCCCCCcceeEEeehhh
Q 024295          173 ALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT---KSDLPTLLDKCKNKEFKLHQLLTHHVKLEE  249 (269)
Q Consensus       173 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  249 (269)
                      ++++++++ |+++.+|.......+++...++.++.++.+........   .+.+.++++++.++++..  .+.+.+++++
T Consensus       227 ~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~~  303 (324)
T cd08244         227 ALALLAPG-GRFLTYGWASGEWTALDEDDARRRGVTVVGLLGVQAERGGLRALEARALAEAAAGRLVP--VVGQTFPLER  303 (324)
T ss_pred             HHHHhccC-cEEEEEecCCCCCCccCHHHHhhCCcEEEEeecccCCHHHHHHHHHHHHHHHHCCCccC--ccceEEeHHH
Confidence            99999996 99999987654233555455566899988876543211   245777888999998653  4677899999


Q ss_pred             HHHHHHHhcCCCe-eeEEeeC
Q 024295          250 IDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       250 ~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++++.+.++.. +|+++++
T Consensus       304 ~~~a~~~~~~~~~~~kvv~~~  324 (324)
T cd08244         304 AAEAHAALEARSTVGKVLLLP  324 (324)
T ss_pred             HHHHHHHHHcCCCCceEEEeC
Confidence            9999999987766 5998875

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=5.8e-28  Score=206.94  Aligned_cols=240  Identities=24%  Similarity=0.388  Sum_probs=199.4

Q ss_pred             ccCCce--eeeecCeEEee---------------------------e--eccCcccceEeeccC-ceEEcCCCCCccccc
Q 024295           16 MLDSTS--RMSVRGQKLYH---------------------------I--FSCSTWSEYMVIDAN-YVVKVDPSIDPSDAS   63 (269)
Q Consensus        16 vg~~~~--~~~~~Gd~v~~---------------------------~--~~~g~~a~~~~v~~~-~~~~vp~~~~~~~aa   63 (269)
                      +|+++.  ++.+ ||+|+.                           +  ...|+|++|+.++++ .++++|+++++++++
T Consensus        77 vG~~v~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa  155 (350)
T cd08256          77 LGEGAEERGVKV-GDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAI  155 (350)
T ss_pred             eCCCcccCCCCC-CCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEECCCCCCHHHHh
Confidence            577777  7888 999986                           2  135899999999988 578999999999999


Q ss_pred             ccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCcc
Q 024295           64 FLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKS  143 (269)
Q Consensus        64 ~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  143 (269)
                      .+ .+++++|+++ ..++++++++|+|.|+|++|++++++|+.+|+..++++++++++.+.++++|++.++++.+   .+
T Consensus       156 ~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~~  230 (350)
T cd08256         156 LI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFGADVVLNPPE---VD  230 (350)
T ss_pred             hh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcCCcEEecCCC---cC
Confidence            88 7999999997 7889999999999888999999999999999867888999999999999999999998876   77


Q ss_pred             HHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhh-hhCCceEEeeeccCCCCCCc
Q 024295          144 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIAL-ACGGRTLKGTTFGGIKTKSD  222 (269)
Q Consensus       144 ~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  222 (269)
                      +.+.+.+++++.++|++||++|++..+..++++++++ |+++.+|.... ..+++...+ ..+++++.++....    ..
T Consensus       231 ~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~~~~~~~----~~  304 (350)
T cd08256         231 VVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKL-GRFVEFSVFGD-PVTVDWSIIGDRKELDVLGSHLGP----YC  304 (350)
T ss_pred             HHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEccCCC-CCccChhHhhcccccEEEEeccCc----hh
Confidence            8888888887778999999999765788999999996 99999986542 233333332 24677887776432    46


Q ss_pred             HHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEe
Q 024295          223 LPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI  267 (269)
Q Consensus       223 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl  267 (269)
                      +.++++++.++.+++.+++.++++++++.++++.++++.. +|+++
T Consensus       305 ~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~  350 (350)
T cd08256         305 YPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL  350 (350)
T ss_pred             HHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence            8899999999998765557889999999999999988765 58774

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=5.7e-28  Score=206.62  Aligned_cols=244  Identities=22%  Similarity=0.349  Sum_probs=204.8

Q ss_pred             ccCCceeeeecCeEEee---------------------------eeccCcccceEeeccC--ceEEcCCCCCcccccccc
Q 024295           16 MLDSTSRMSVRGQKLYH---------------------------IFSCSTWSEYMVIDAN--YVVKVDPSIDPSDASFLS   66 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~---------------------------~~~~g~~a~~~~v~~~--~~~~vp~~~~~~~aa~~~   66 (269)
                      +|+++..+++ ||+|++                           +..+|+|++|+.++..  .++++|++++.++++.++
T Consensus        69 ~G~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~  147 (345)
T cd08260          69 VGEDVSRWRV-GDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLG  147 (345)
T ss_pred             ECCCCccCCC-CCEEEECCCCCCCCCccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEECCCCCCHHHhhhhc
Confidence            5777778888 999975                           3336899999999974  899999999999999999


Q ss_pred             cchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHH
Q 024295           67 CGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISE  146 (269)
Q Consensus        67 ~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  146 (269)
                      +++++||+++....++.++++|+|+|+|++|++++++|+..|+ +|+++++++++.+.++++|++.+++.++  +.++.+
T Consensus       148 ~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~--~~~~~~  224 (345)
T cd08260         148 CRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNASE--VEDVAA  224 (345)
T ss_pred             cchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCEEEcccc--chhHHH
Confidence            9999999998888889999999999999999999999999999 8999999999999999999999988762  246777


Q ss_pred             HHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCcc--ccchhHhhhhCCceEEeeeccCCCCCCcHH
Q 024295          147 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAM--VPLNVIALACGGRTLKGTTFGGIKTKSDLP  224 (269)
Q Consensus       147 ~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (269)
                      .+..+.++ ++|++||++|+.......+++++++ |+++.+|......  ..++...+..++.++.+....   ..+.++
T Consensus       225 ~~~~~~~~-~~d~vi~~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  299 (345)
T cd08260         225 AVRDLTGG-GAHVSVDALGIPETCRNSVASLRKR-GRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGM---PAHRYD  299 (345)
T ss_pred             HHHHHhCC-CCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcC---CHHHHH
Confidence            78877777 8999999998766788999999996 9999998765321  455555565688888887542   246788


Q ss_pred             HHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295          225 TLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT  268 (269)
Q Consensus       225 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~  268 (269)
                      .+++++.++++.+.+.+.+.+++++++++++.+..+.. +|+|++
T Consensus       300 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~  344 (345)
T cd08260         300 AMLALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT  344 (345)
T ss_pred             HHHHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence            99999999998765556788999999999999887765 588864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.96  E-value=7.2e-28  Score=205.83  Aligned_cols=241  Identities=24%  Similarity=0.388  Sum_probs=199.3

Q ss_pred             ccCCceeeeecCeEEee------------------------e----eccCcccceEeeccCceEEcCCCCCccccccccc
Q 024295           16 MLDSTSRMSVRGQKLYH------------------------I----FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSC   67 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~------------------------~----~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~   67 (269)
                      +|+++.++++ ||+|++                        +    ...|+|++|++++++.++++|+++++++++.+ .
T Consensus        69 vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~  146 (343)
T cd05285          69 VGSGVTHLKV-GDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALV-E  146 (343)
T ss_pred             eCCCCCCCCC-CCEEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhh-h
Confidence            5777788898 999975                        1    12589999999999999999999999999877 5


Q ss_pred             chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccH---
Q 024295           68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSI---  144 (269)
Q Consensus        68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~---  144 (269)
                      ++++|++++ ..+.++++++|||+|+|++|++++|+|+.+|++.|+++++++++.+.++++|+++++++++   .++   
T Consensus       147 ~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~---~~~~~~  222 (343)
T cd05285         147 PLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRT---EDTPES  222 (343)
T ss_pred             HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEecccc---ccchhH
Confidence            888999986 7899999999999988999999999999999944999998899999999999999998875   453   


Q ss_pred             HHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHH
Q 024295          145 SELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLP  224 (269)
Q Consensus       145 ~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (269)
                      .+.+.+.+++.++|++|||+|....+..++++++++ |+++.+|.... ...++......++.++.++...    .+.+.
T Consensus       223 ~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~  296 (343)
T cd05285         223 AEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPG-GTVVLVGMGKP-EVTLPLSAASLREIDIRGVFRY----ANTYP  296 (343)
T ss_pred             HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC-CCccCHHHHhhCCcEEEEeccC----hHHHH
Confidence            777888777778999999999866789999999996 99999986543 2344444556678888776422    25788


Q ss_pred             HHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCC-e-eeEEee
Q 024295          225 TLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD-C-VKVLIT  268 (269)
Q Consensus       225 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~-~-~k~vl~  268 (269)
                      ++++++.++++.+.+.+.++++++++.++++.+.++. . +|++|.
T Consensus       297 ~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~  342 (343)
T cd05285         297 TAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVIE  342 (343)
T ss_pred             HHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEEe
Confidence            8999999998765555778899999999999988763 3 799873

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=7.6e-28  Score=208.54  Aligned_cols=247  Identities=21%  Similarity=0.334  Sum_probs=198.7

Q ss_pred             cccCCceeeeecCeEEee---------------------------eeccCcccceEeeccCceEEcCCCC-------Ccc
Q 024295           15 LMLDSTSRMSVRGQKLYH---------------------------IFSCSTWSEYMVIDANYVVKVDPSI-------DPS   60 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~---------------------------~~~~g~~a~~~~v~~~~~~~vp~~~-------~~~   60 (269)
                      .+|.++..+++ ||+|+.                           +..+|+|++|++++++.++++|+++       +.+
T Consensus       101 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~  179 (384)
T cd08265         101 KTGKNVKNFEK-GDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELREIYSEDKAFE  179 (384)
T ss_pred             EECCCCCCCCC-CCEEEECCCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCccccccccCCCHH
Confidence            35777778888 999974                           3336899999999999999999863       444


Q ss_pred             cccccccchhhhHHHHHHh-cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCC
Q 024295           61 DASFLSCGFTTGYGAAWKE-AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDE  139 (269)
Q Consensus        61 ~aa~~~~~~~~a~~~l~~~-~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~  139 (269)
                       ++.+..++++||+++... .+++++++|||+|+|++|++++++|+..|+++|+++++++++.+.++++|+++++++++.
T Consensus       180 -~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~  258 (384)
T cd08265         180 -AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPTKM  258 (384)
T ss_pred             -HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEccccc
Confidence             555667899999998666 789999999999989999999999999998779999988889999999999999987741


Q ss_pred             CCccHHHHHHhhhCCCCccEEEEccCCh-hHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCC
Q 024295          140 PNKSISELVKGITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIK  218 (269)
Q Consensus       140 ~~~~~~~~i~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (269)
                      +..++.+.+++++++.++|+++|++|.+ ..+..++++++++ |+++.+|.... ..++....+..++.++.+++...  
T Consensus       259 ~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~l~~~~~~~--  334 (384)
T cd08265         259 RDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAIN-GKIVYIGRAAT-TVPLHLEVLQVRRAQIVGAQGHS--  334 (384)
T ss_pred             ccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcC-CEEEEECCCCC-CCcccHHHHhhCceEEEEeeccC--
Confidence            1237888888888877999999999863 4678999999996 99999986542 33344445555777888765322  


Q ss_pred             CCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEe
Q 024295          219 TKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI  267 (269)
Q Consensus       219 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl  267 (269)
                      ....+.++++++.++.+++..+++++|++++++++++.+.++..+|+|+
T Consensus       335 ~~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~kvvv  383 (384)
T cd08265         335 GHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASERTDGKITI  383 (384)
T ss_pred             CcchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEe
Confidence            2346899999999999876656778999999999999977665568775

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.96  E-value=4.4e-28  Score=205.29  Aligned_cols=245  Identities=21%  Similarity=0.270  Sum_probs=205.5

Q ss_pred             cccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-
Q 024295           15 LMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-   93 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-   93 (269)
                      .+|+++.++++ ||+|++....|+|++|+.++...++++|+++++.+++.+++.+.+|++++.....+.++++|||+|+ 
T Consensus        70 ~~G~~v~~~~~-Gd~V~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~  148 (323)
T cd05282          70 EVGSGVSGLLV-GQRVLPLGGEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAAN  148 (323)
T ss_pred             EeCCCCCCCCC-CCEEEEeCCCCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccc
Confidence            36788888898 9999987645899999999999999999999999999999999999999888888899999999986 


Q ss_pred             ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHH
Q 024295           94 GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA  173 (269)
Q Consensus        94 g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  173 (269)
                      |.+|++++++|+.+|+ +++++.+++++.+.++++|++.++++.+   .++.+.+.+.+++.++|+++|++|+. .....
T Consensus       149 ~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~g~~-~~~~~  223 (323)
T cd05282         149 SAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVIDSSP---EDLAQRVKEATGGAGARLALDAVGGE-SATRL  223 (323)
T ss_pred             cHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCEEecccc---hhHHHHHHHHhcCCCceEEEECCCCH-HHHHH
Confidence            8999999999999999 8899988999999999999999998876   67888888888777999999999986 56788


Q ss_pred             HHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC-------CCcHHHHHHHHHCCCCCCCcceeEEee
Q 024295          174 LETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT-------KSDLPTLLDKCKNKEFKLHQLLTHHVK  246 (269)
Q Consensus       174 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~g~~~~~~~~~~~~~  246 (269)
                      +++++++ |+++.+|........++...+..++.++.+.....+..       .+.+.++++++.++++.+  .+.++++
T Consensus       224 ~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~  300 (323)
T cd05282         224 ARSLRPG-GTLVNYGLLSGEPVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTT--PVGAKFP  300 (323)
T ss_pred             HHhhCCC-CEEEEEccCCCCCCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCccc--Cccceec
Confidence            9999996 99999987653233455555555899998877654321       134777888999998654  3677899


Q ss_pred             hhhHHHHHHHhcCCCe-eeEEee
Q 024295          247 LEEIDKAIQLLKQPDC-VKVLIT  268 (269)
Q Consensus       247 ~~~~~~a~~~~~~~~~-~k~vl~  268 (269)
                      +++++++++.+.++.. +|+|++
T Consensus       301 ~~~~~~a~~~~~~~~~~~kvv~~  323 (323)
T cd05282         301 LEDFEEAVAAAEQPGRGGKVLLT  323 (323)
T ss_pred             HHHHHHHHHHHhcCCCCceEeeC
Confidence            9999999999887665 588764

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.96  E-value=1e-27  Score=204.81  Aligned_cols=243  Identities=25%  Similarity=0.384  Sum_probs=201.8

Q ss_pred             ccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCc-----eEEcCCCCCccccc
Q 024295           16 MLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANY-----VVKVDPSIDPSDAS   63 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~-----~~~vp~~~~~~~aa   63 (269)
                      +|.++..+++ ||+|++..                           ..|+|++|++++++.     ++++|+++++++++
T Consensus        68 ~G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa  146 (343)
T cd08235          68 VGDGVTGFKV-GDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAA  146 (343)
T ss_pred             eCCCCCCCCC-CCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEECCCCCCHHHHH
Confidence            5777778888 99998752                           358999999999988     99999999999998


Q ss_pred             ccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCcc
Q 024295           64 FLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKS  143 (269)
Q Consensus        64 ~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  143 (269)
                      .+ +++.+|++++. ..+++++++|||+|+|.+|++++|+|+..|++.|+++++++++.+.++++|.++++++++   .+
T Consensus       147 ~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~---~~  221 (343)
T cd08235         147 LV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAE---ED  221 (343)
T ss_pred             hh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCc---cC
Confidence            76 78899999885 458999999999988999999999999999943999988999999998999999998887   78


Q ss_pred             HHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeeccCCCCCCc
Q 024295          144 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGIKTKSD  222 (269)
Q Consensus       144 ~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (269)
                      +.+.+++..++.++|+++|++++......++++++++ |+++.+|.... ....++...+..++..+.++...   ..+.
T Consensus       222 ~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~  297 (343)
T cd08235         222 LVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKG-GRILFFGGLPKGSTVNIDPNLIHYREITITGSYAA---SPED  297 (343)
T ss_pred             HHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEeccCCCCCcccCHHHHhhCceEEEEEecC---Chhh
Confidence            8888888877778999999999766788999999996 99999986543 23444555566688888776532   2356


Q ss_pred             HHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEee
Q 024295          223 LPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT  268 (269)
Q Consensus       223 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~  268 (269)
                      ++.++++++++.+++.+.+..+++++++.++++.+.++..+|+|++
T Consensus       298 ~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~  343 (343)
T cd08235         298 YKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGKSLKIVIT  343 (343)
T ss_pred             HHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCCcEEEEeC
Confidence            8889999999997754456778999999999999887664588874

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.96  E-value=9.2e-28  Score=205.00  Aligned_cols=243  Identities=25%  Similarity=0.366  Sum_probs=205.0

Q ss_pred             ccccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccCceEEcCCCCCccccccc
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFL   65 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~   65 (269)
                      -.+|+++..+++ ||+|+...                            ..|++++|+.++++.++++|+++++++++.+
T Consensus        69 ~~vG~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l  147 (341)
T cd08297          69 VAVGPGVSGLKV-GDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPL  147 (341)
T ss_pred             EEeCCCCCCCCC-CCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEECCCCCCHHHHHHH
Confidence            346778888888 99997642                            2589999999999999999999999999999


Q ss_pred             ccchhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccH
Q 024295           66 SCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSI  144 (269)
Q Consensus        66 ~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  144 (269)
                      +..+.+||+++.. .+++++++|||+|+ +.+|++++++++.+|+ +|+++++++++.+.++++|++.++++.+   .++
T Consensus       148 ~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~~~  222 (341)
T cd08297         148 LCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADAFVDFKK---SDD  222 (341)
T ss_pred             HcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcEEEcCCC---ccH
Confidence            9999999998765 58999999999987 6799999999999999 9999999999999999999999998876   678


Q ss_pred             HHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHH
Q 024295          145 SELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLP  224 (269)
Q Consensus       145 ~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (269)
                      .+.+.+++++.++|+++|+.+.......++++++++ |+++.+|.......+++...++.++.++.+....   ..+.++
T Consensus       223 ~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  298 (341)
T cd08297         223 VEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLVG---TRQDLQ  298 (341)
T ss_pred             HHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcC-CEEEEecCCCCCCCCCCHHHHHhcccEEEEeccC---CHHHHH
Confidence            888888887779999999887766889999999996 9999998665323356666666789998886432   236789


Q ss_pred             HHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          225 TLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       225 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++++.++++++  .+ +.+++++++++++.+..+.. +|++++|
T Consensus       299 ~~~~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~  341 (341)
T cd08297         299 EALEFAARGKVKP--HI-QVVPLEDLNEVFEKMEEGKIAGRVVVDF  341 (341)
T ss_pred             HHHHHHHcCCCcc--ee-EEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence            9999999999754  34 57999999999999988766 5999875

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.96  E-value=5.9e-28  Score=210.20  Aligned_cols=246  Identities=19%  Similarity=0.228  Sum_probs=201.1

Q ss_pred             cccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295           15 LMLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLS   66 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~   66 (269)
                      .+|+++..+++ ||+|+...                            ..|+|+||++++++.++++|+++++++++.+.
T Consensus        91 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l~~~~aa~~~  169 (398)
T TIGR01751        91 RVGPGVTRWKV-GDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWEEAACPG  169 (398)
T ss_pred             EeCCCCCCCCC-CCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCCCCHHHHhhcc
Confidence            35778888888 99997643                            24899999999999999999999999999999


Q ss_pred             cchhhhHHHHHH--hcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCC---
Q 024295           67 CGFTTGYGAAWK--EAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEP---  140 (269)
Q Consensus        67 ~~~~~a~~~l~~--~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~---  140 (269)
                      +++.+||+++..  .++++++++|+|+|+ |++|++++++++.+|+ +++++++++++.+.++++|++.++|+++.+   
T Consensus       170 ~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~  248 (398)
T TIGR01751       170 LTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVVSSPEKAEYCRELGAEAVIDRNDFGHWG  248 (398)
T ss_pred             chHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCCEEecCCCcchhh
Confidence            999999999765  577889999999997 9999999999999999 788888888999999999999999875410   


Q ss_pred             ----------------CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhh
Q 024295          141 ----------------NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALAC  204 (269)
Q Consensus       141 ----------------~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~  204 (269)
                                      ...+.+.+.+++++.++|++|||+|.. .+..++++++++ |+++.+|.......+++...+..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~  326 (398)
T TIGR01751       249 RLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRA-TFPTSVFVCRRG-GMVVICGGTTGYNHDYDNRYLWM  326 (398)
T ss_pred             ccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHH-HHHHHHHhhccC-CEEEEEccccCCCCCcCHHHHhh
Confidence                            012556677777767899999999864 788999999996 99999997654334555556666


Q ss_pred             CCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          205 GGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++.++.++....   .+++.+++++++++++.  +.+++++++++++++|+.+.++.. +|+|+++
T Consensus       327 ~~~~~~~~~~~~---~~~~~~~~~~l~~~~l~--~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~  387 (398)
T TIGR01751       327 RQKRIQGSHFAN---LREAWEANRLVAKGRID--PTLSKVYPLEEIGQAHQDVHRNHHQGNVAVLV  387 (398)
T ss_pred             cccEEEccccCc---HHHHHHHHHHHHCCCcc--cceeeEEcHHHHHHHHHHHHcCCCCceEEEEe
Confidence            788887776443   24578899999999865  347789999999999999887765 5888763

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.96  E-value=1.4e-27  Score=201.28  Aligned_cols=245  Identities=22%  Similarity=0.314  Sum_probs=199.4

Q ss_pred             ccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC
Q 024295           14 GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL   93 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~   93 (269)
                      -.+|+++..+++ ||+|++.. .|+|++|++++++.++++|+++  ..++....++++|++++. ..+++++++|||+|+
T Consensus        64 ~~vG~~v~~~~~-Gd~V~~~~-~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~  138 (312)
T cd08269          64 VALGPGVRGLAV-GDRVAGLS-GGAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFR-RGWIRAGKTVAVIGA  138 (312)
T ss_pred             EEECCCCcCCCC-CCEEEEec-CCcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHH-hcCCCCCCEEEEECC
Confidence            346778778888 99998765 4889999999999999999988  233322368889999875 888999999999988


Q ss_pred             ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHH
Q 024295           94 GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA  173 (269)
Q Consensus        94 g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  173 (269)
                      |.+|.+++++|+.+|++.|+++++++++.+.++++|++++++.++   .++.+.+.+++++.++|+++|++|+......+
T Consensus       139 g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~  215 (312)
T cd08269         139 GFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDS---EAIVERVRELTGGAGADVVIEAVGHQWPLDLA  215 (312)
T ss_pred             CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCC---cCHHHHHHHHcCCCCCCEEEECCCCHHHHHHH
Confidence            999999999999999943999998888999889999998888776   77888888888777999999999877678999


Q ss_pred             HHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC-CCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHH
Q 024295          174 LETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI-KTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDK  252 (269)
Q Consensus       174 ~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  252 (269)
                      +++++++ |+++.+|.....+.++++..+.+++.++.++..... ...+.+++++++++++++.+...+.++++++++++
T Consensus       216 ~~~l~~~-g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  294 (312)
T cd08269         216 GELVAER-GRLVIFGYHQDGPRPVPFQTWNWKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGD  294 (312)
T ss_pred             HHHhccC-CEEEEEccCCCCCcccCHHHHhhcCCEEEEecccCccchhhHHHHHHHHHHcCCCCchhheeeeecHHHHHH
Confidence            9999996 999999865433344555566668888877643322 12357889999999999776444667899999999


Q ss_pred             HHHHhcCCCe--eeEEe
Q 024295          253 AIQLLKQPDC--VKVLI  267 (269)
Q Consensus       253 a~~~~~~~~~--~k~vl  267 (269)
                      +++.+.+++.  +|+++
T Consensus       295 a~~~~~~~~~~~~~~~~  311 (312)
T cd08269         295 AFEAARRRPDGFIKGVI  311 (312)
T ss_pred             HHHHHHhCCCCceEEEe
Confidence            9999988764  69886

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.96  E-value=6e-28  Score=205.32  Aligned_cols=246  Identities=25%  Similarity=0.280  Sum_probs=202.2

Q ss_pred             cccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-
Q 024295           15 LMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-   93 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-   93 (269)
                      .+|+++.++++ ||+|+++..+|+|++|++++.+.++++|++++.++++.+++++.+|++++...+.++++++|+|+|+ 
T Consensus        72 ~vG~~v~~~~~-Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~  150 (334)
T PTZ00354         72 DVGSDVKRFKE-GDRVMALLPGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGA  150 (334)
T ss_pred             EeCCCCCCCCC-CCEEEEecCCCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence            36777778888 9999988656899999999999999999999999999999999999999888889999999999985 


Q ss_pred             ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCcc-HHHHHHhhhCCCCccEEEEccCChhHHHH
Q 024295           94 GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKS-ISELVKGITHGMGVDYCFECTGVPSLLSE  172 (269)
Q Consensus        94 g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-~~~~i~~~~~~~~~d~v~d~~g~~~~~~~  172 (269)
                      |++|++++++++..|+ +++.+.+++++.+.++++|++++++...   .+ +.+.+++.+++.++|++||++++. .+..
T Consensus       151 g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~  225 (334)
T PTZ00354        151 SGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAIILIRYPD---EEGFAPKVKKLTGEKGVNLVLDCVGGS-YLSE  225 (334)
T ss_pred             chHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCC---hhHHHHHHHHHhCCCCceEEEECCchH-HHHH
Confidence            9999999999999999 7777888899999999999998888765   44 778888887777999999999865 7789


Q ss_pred             HHHHcccCCcEEEEEccCCCcccc-chhHhhhhCCceEEeeeccCCCCC-------CcHHHHHHHHHCCCCCCCcceeEE
Q 024295          173 ALETTKVGKGKVIVIGVGVDAMVP-LNVIALACGGRTLKGTTFGGIKTK-------SDLPTLLDKCKNKEFKLHQLLTHH  244 (269)
Q Consensus       173 ~~~~l~~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~g~~~~~~~~~~~  244 (269)
                      ++++++++ |+++.+|........ ++...+..++.++.++........       +.++++++++.++.++.  .+.++
T Consensus       226 ~~~~l~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~  302 (334)
T PTZ00354        226 TAEVLAVD-GKWIVYGFMGGAKVEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIKP--IVDRT  302 (334)
T ss_pred             HHHHhccC-CeEEEEecCCCCcccccCHHHHHhhCCEEEeeeccccchhhhHHHHHHHHHHHHHHHHCCCccC--ccccE
Confidence            99999996 999999865432222 555556667778888765432110       22467888898998653  36778


Q ss_pred             eehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          245 VKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       245 ~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +++++++++++.+.++.. +|+|+++
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~kvvv~~  328 (334)
T PTZ00354        303 YPLEEVAEAHTFLEQNKNIGKVVLTV  328 (334)
T ss_pred             EcHHHHHHHHHHHHhCCCCceEEEec
Confidence            999999999998887654 5888864

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=7.7e-28  Score=206.14  Aligned_cols=240  Identities=22%  Similarity=0.322  Sum_probs=196.6

Q ss_pred             ccccCCceeeeecCeEEeeee-------------------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHH
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF-------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYG   74 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~-------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~   74 (269)
                      -.+|+++.++++ ||+|++..                   .+|++++|+.++.+.++++|+++++++++.+++++.+||+
T Consensus        90 ~~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~  168 (350)
T cd08274          90 VAVGEGVDTARI-GERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAEN  168 (350)
T ss_pred             EEeCCCCCCCCC-CCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHH
Confidence            345788888998 99998631                   2489999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhC
Q 024295           75 AAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        75 ~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      ++ ...+++++++|||+|+ |++|++++++++.+|+ ++++++.++ +.+.++++|++.+++..+   ..+.+  ...++
T Consensus       169 ~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~~~~~-~~~~~~~~g~~~~~~~~~---~~~~~--~~~~~  240 (350)
T cd08274         169 ML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAVAGAA-KEEAVRALGADTVILRDA---PLLAD--AKALG  240 (350)
T ss_pred             HH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCch-hhHHHHhcCCeEEEeCCC---ccHHH--HHhhC
Confidence            87 7789999999999997 9999999999999999 788888655 888889999876666543   33433  44556


Q ss_pred             CCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCC
Q 024295          154 GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNK  233 (269)
Q Consensus       154 ~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  233 (269)
                      +.++|++||++|+. .+..++++++++ |+++.+|.......+++...++.++.++.++....   .+.+.++++++.++
T Consensus       241 ~~~~d~vi~~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~  315 (350)
T cd08274         241 GEPVDVVADVVGGP-LFPDLLRLLRPG-GRYVTAGAIAGPVVELDLRTLYLKDLTLFGSTLGT---REVFRRLVRYIEEG  315 (350)
T ss_pred             CCCCcEEEecCCHH-HHHHHHHHhccC-CEEEEecccCCccccCCHHHhhhcceEEEEeecCC---HHHHHHHHHHHHCC
Confidence            66899999999975 789999999996 99999986542224566666667899998876532   36788999999999


Q ss_pred             CCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          234 EFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +++.  .+.+++++++++++++.+.++.. +|+|+++
T Consensus       316 ~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~  350 (350)
T cd08274         316 EIRP--VVAKTFPLSEIREAQAEFLEKRHVGKLVLVP  350 (350)
T ss_pred             Cccc--ccccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence            8653  46788999999999999887665 5988864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.96  E-value=1.7e-27  Score=203.61  Aligned_cols=246  Identities=26%  Similarity=0.356  Sum_probs=200.6

Q ss_pred             ccccCCceeeeecCeEEee-ee--------------------------ccCcccceEeeccC--ceEEcCCCCCccccc-
Q 024295           14 GLMLDSTSRMSVRGQKLYH-IF--------------------------SCSTWSEYMVIDAN--YVVKVDPSIDPSDAS-   63 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~-~~--------------------------~~g~~a~~~~v~~~--~~~~vp~~~~~~~aa-   63 (269)
                      -.+|+++.++++ ||+|++ ..                          .+|+|++|+.++..  .++++|++++++.+. 
T Consensus        66 ~~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~  144 (345)
T cd08287          66 EEVGSEVTSVKP-GDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLL  144 (345)
T ss_pred             EEeCCCCCccCC-CCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEECCCCCChhhhhh
Confidence            336788888888 999976 21                          12889999999974  999999999873221 


Q ss_pred             ----ccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCC
Q 024295           64 ----FLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDE  139 (269)
Q Consensus        64 ----~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~  139 (269)
                          ++...+++|++++ ..+.++++++|+|.|+|++|++++|+|+..|++.++++++++++.+.++++|++.++++.+ 
T Consensus       145 ~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~-  222 (345)
T cd08287         145 PSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGATDIVAERG-  222 (345)
T ss_pred             hhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCceEecCCc-
Confidence                1225688899987 4678999999999989999999999999999966899998888999999999999999886 


Q ss_pred             CCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC
Q 024295          140 PNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT  219 (269)
Q Consensus       140 ~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (269)
                        ..+.+.+.+.+++.++|+++|++|++..+..++++++++ |+++.+|.... ...++....+.++.++.+....   .
T Consensus       223 --~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~---~  295 (345)
T cd08287         223 --EEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPG-GRVGYVGVPHG-GVELDVRELFFRNVGLAGGPAP---V  295 (345)
T ss_pred             --ccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccC-CEEEEecccCC-CCccCHHHHHhcceEEEEecCC---c
Confidence              778888888877779999999998877889999999996 99999987652 3445554555689999875322   2


Q ss_pred             CCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          220 KSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       220 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      .+.++++++++.++++++.+.+.+++++++++++++.+.++...|++|++
T Consensus       296 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~~~~~  345 (345)
T cd08287         296 RRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRAIKVLLRP  345 (345)
T ss_pred             HHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCceEEEeCC
Confidence            35789999999999987655577899999999999998877767999874

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.96  E-value=3.3e-28  Score=191.86  Aligned_cols=233  Identities=20%  Similarity=0.235  Sum_probs=191.8

Q ss_pred             cccCCceeeeecCeEEeeeec-cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC
Q 024295           15 LMLDSTSRMSVRGQKLYHIFS-CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL   93 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~~-~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~   93 (269)
                      -+|+++.+|.+ ||.|+.... .|+|++|.+.+++.++++++.++++.||++..+.+|||++|....++++|++|+-.|+
T Consensus        91 ~vGs~vkgfk~-Gd~VIp~~a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNga  169 (354)
T KOG0025|consen   91 AVGSNVKGFKP-GDWVIPLSANLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGA  169 (354)
T ss_pred             EecCCcCccCC-CCeEeecCCCCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCc
Confidence            35788888999 999986543 4999999999999999999999999999999999999999999999999999999987


Q ss_pred             -ChhHHHHHHHHHHcCCCeEEEEcCCcchHHH----HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChh
Q 024295           94 -GTVGLGAVDGARMHGAAKIIGIDKNPWKKEK----GKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS  168 (269)
Q Consensus        94 -g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~----~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~  168 (269)
                       +.+|++.+|+||+.|+ +.+.+.|+....+.    ++.+||++++...+..+.+..   ........+.+.|||+|+. 
T Consensus       170 nS~VG~~ViQlaka~Gi-ktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~~~~~---k~~~~~~~prLalNcVGGk-  244 (354)
T KOG0025|consen  170 NSGVGQAVIQLAKALGI-KTINVVRDRPNIEELKKQLKSLGATEVITEEELRDRKMK---KFKGDNPRPRLALNCVGGK-  244 (354)
T ss_pred             ccHHHHHHHHHHHHhCc-ceEEEeecCccHHHHHHHHHHcCCceEecHHHhcchhhh---hhhccCCCceEEEeccCch-
Confidence             8999999999999999 77777777655444    456999999976542122221   1212345899999999998 


Q ss_pred             HHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCC--------CcHHHHHHHHHCCCCCCCcc
Q 024295          169 LLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTK--------SDLPTLLDKCKNKEFKLHQL  240 (269)
Q Consensus       169 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~g~~~~~~~  240 (269)
                      +..++.+.|..| |+.+.||...-.+.+++...+++|++.+.|+|+..+...        +.+.++.+++..|+++.+. 
T Consensus       245 sa~~iar~L~~G-gtmvTYGGMSkqPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~-  322 (354)
T KOG0025|consen  245 SATEIARYLERG-GTMVTYGGMSKQPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAPN-  322 (354)
T ss_pred             hHHHHHHHHhcC-ceEEEecCccCCCcccccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeecccc-
Confidence            557899999997 999999988767888999999999999999999887432        3467899999999987663 


Q ss_pred             eeEEeehhhHHHHHHH
Q 024295          241 LTHHVKLEEIDKAIQL  256 (269)
Q Consensus       241 ~~~~~~~~~~~~a~~~  256 (269)
                       ....++++...|++.
T Consensus       323 -~e~v~L~~~~tald~  337 (354)
T KOG0025|consen  323 -CEKVPLADHKTALDA  337 (354)
T ss_pred             -ceeeechhhhHHHHH
Confidence             345788888777773

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.96  E-value=2.6e-27  Score=202.19  Aligned_cols=244  Identities=25%  Similarity=0.356  Sum_probs=198.1

Q ss_pred             cccCCceeeeecCeEEeee---------------------------eccCcccceEeeccCceEEcCCCCCccccccccc
Q 024295           15 LMLDSTSRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSC   67 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~   67 (269)
                      .+|+++.++++ ||+|++.                           ...|+|++|++++++.++++|++++.+++ .++.
T Consensus        69 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~  146 (340)
T TIGR00692        69 GIGPGVEGIKV-GDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQE  146 (340)
T ss_pred             EECCCCCcCCC-CCEEEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCCChHhh-hhcc
Confidence            35788888999 9999862                           24589999999999999999999998655 4667


Q ss_pred             chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295           68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL  147 (269)
Q Consensus        68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  147 (269)
                      ++.+|++++  ....+++++++|.|+|++|.+++|+++.+|++.|+++++++++.+.++++|++.++++.+   .++.+.
T Consensus       147 ~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~---~~~~~~  221 (340)
T TIGR00692       147 PLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFK---EDVVKE  221 (340)
T ss_pred             hHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccc---cCHHHH
Confidence            888998876  345778999999888999999999999999944888888888999999999998898876   778888


Q ss_pred             HHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhH-hhhhCCceEEeeeccCCCCCCcHHHH
Q 024295          148 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVI-ALACGGRTLKGTTFGGIKTKSDLPTL  226 (269)
Q Consensus       148 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (269)
                      +.+.+++.++|++||++|+...+...+++++++ |+++.+|.... ..+++.. .+++++.++.+.....  ..+.+.++
T Consensus       222 l~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  297 (340)
T TIGR00692       222 VADLTDGEGVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGLPPG-KVTIDFTNKVIFKGLTIYGITGRH--MFETWYTV  297 (340)
T ss_pred             HHHhcCCCCCCEEEECCCCHHHHHHHHHhhcCC-CEEEEEccCCC-CcccchhhhhhhcceEEEEEecCC--chhhHHHH
Confidence            888877678999999998776889999999996 99999987542 2233333 4555777877654211  22457889


Q ss_pred             HHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          227 LDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       227 ~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      ++++.++++++.+++.+.++++++.++++.+.++..+|+|+++
T Consensus       298 ~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~gkvvv~~  340 (340)
T TIGR00692       298 SRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQTGKVILSL  340 (340)
T ss_pred             HHHHHcCCCChHHheeeeeeHHHHHHHHHHHhcCCCceEEEeC
Confidence            9999999987655678899999999999998876667999875

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.96  E-value=3e-27  Score=201.40  Aligned_cols=240  Identities=26%  Similarity=0.400  Sum_probs=201.5

Q ss_pred             ccCCceeeeecCeEEee------------------e---------eccCcccceEeeccCceEEcCCCCCcccccccccc
Q 024295           16 MLDSTSRMSVRGQKLYH------------------I---------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCG   68 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~------------------~---------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~   68 (269)
                      +|+++..+++ ||+|+.                  +         ..+|+|++|+.++.+.++++|++++.++++.++.+
T Consensus        71 ~G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~  149 (338)
T cd08254          71 VGAGVTNFKV-GDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDA  149 (338)
T ss_pred             ECCCCccCCC-CCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCCCHHHhhhhcch
Confidence            4777777888 999975                  1         12489999999999999999999999999999999


Q ss_pred             hhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHH
Q 024295           69 FTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELV  148 (269)
Q Consensus        69 ~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  148 (269)
                      +++||+++.....++++++|||.|+|++|++++++|+..|+ +|+++++++++.+.++++|.+++++..+   ..+.+.+
T Consensus       150 ~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~~---~~~~~~~  225 (338)
T cd08254         150 VLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSLD---DSPKDKK  225 (338)
T ss_pred             HHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCCC---cCHHHHH
Confidence            99999998888889999999999889999999999999999 8999999999999999999988888775   5666666


Q ss_pred             HhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHH
Q 024295          149 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLD  228 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (269)
                       ...++.++|+++|++|....+..++++++++ |+++.+|.... ...++...+..++.++.+++..   ..+.+..+++
T Consensus       226 -~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  299 (338)
T cd08254         226 -AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGRD-KLTVDLSDLIARELRIIGSFGG---TPEDLPEVLD  299 (338)
T ss_pred             -HHhcCCCceEEEECCCCHHHHHHHHHHhhcC-CEEEEECCCCC-CCccCHHHHhhCccEEEEeccC---CHHHHHHHHH
Confidence             5555568999999998777889999999996 99999986542 3345555666788888876532   2467888999


Q ss_pred             HHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          229 KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       229 l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +++++.+++.   .+++++++++++++.+.++.. +|+|+++
T Consensus       300 ll~~~~l~~~---~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  338 (338)
T cd08254         300 LIAKGKLDPQ---VETRPLDEIPEVLERLHKGKVKGRVVLVP  338 (338)
T ss_pred             HHHcCCCccc---ceeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence            9999997754   468999999999999988766 5999875

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.96  E-value=3.5e-27  Score=201.44  Aligned_cols=244  Identities=20%  Similarity=0.292  Sum_probs=197.3

Q ss_pred             ccccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLS   66 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~   66 (269)
                      -.+|+++..+++ ||+|++..                           .+|+|++|+.++.+.++++|+++++++++.+ 
T Consensus        70 ~~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~-  147 (341)
T PRK05396         70 VEVGSEVTGFKV-GDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIF-  147 (341)
T ss_pred             EEeCCCCCcCCC-CCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhHhh-
Confidence            345788888999 99998641                           3589999999999999999999999888754 


Q ss_pred             cchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHH
Q 024295           67 CGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISE  146 (269)
Q Consensus        67 ~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  146 (269)
                      .++.++++++..  ..+++++|+|.|+|++|++++|+++.+|+++|+++++++++.+.++++|+++++++++   .++.+
T Consensus       148 ~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~---~~~~~  222 (341)
T PRK05396        148 DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAK---EDLRD  222 (341)
T ss_pred             hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc---ccHHH
Confidence            566777666532  3468999999988999999999999999966888888889999999999999998876   77888


Q ss_pred             HHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHH
Q 024295          147 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTL  226 (269)
Q Consensus       147 ~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (269)
                      .+++++++.++|++|||+|+...+..++++++++ |+++.+|.... ..+++...+.++++++.++....  ..+.+..+
T Consensus       223 ~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~  298 (341)
T PRK05396        223 VMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHG-GRIAMLGIPPG-DMAIDWNKVIFKGLTIKGIYGRE--MFETWYKM  298 (341)
T ss_pred             HHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCC-CCcccHHHHhhcceEEEEEEccC--ccchHHHH
Confidence            8888877779999999998877889999999996 99999987653 33344456667888888765222  12446678


Q ss_pred             HHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          227 LDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       227 ~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      ++++.++ +++.+.+.+++++++++++|+.+..+..+|++++|
T Consensus       299 ~~~~~~~-~~~~~~~~~~~~l~~~~~a~~~~~~~~~gk~vv~~  340 (341)
T PRK05396        299 SALLQSG-LDLSPIITHRFPIDDFQKGFEAMRSGQSGKVILDW  340 (341)
T ss_pred             HHHHHcC-CChhHheEEEEeHHHHHHHHHHHhcCCCceEEEec
Confidence            8899888 54555677899999999999988776657999875

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.96  E-value=5.4e-27  Score=200.42  Aligned_cols=244  Identities=25%  Similarity=0.385  Sum_probs=197.9

Q ss_pred             ccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCcccccccccc
Q 024295           16 MLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCG   68 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~   68 (269)
                      +|.++..+++ ||+|+++.                           ..|+|++|++++++.++++|+++++++++++ ..
T Consensus        67 ~g~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~  144 (343)
T cd08236          67 VGSGVDDLAV-GDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EP  144 (343)
T ss_pred             ECCCCCcCCC-CCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCCCHHHHHhc-ch
Confidence            5777778899 99998762                           3589999999999999999999999999887 58


Q ss_pred             hhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHH
Q 024295           69 FTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELV  148 (269)
Q Consensus        69 ~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  148 (269)
                      +++||+++. ..+++++++|||+|+|.+|.+++|+|+.+|++.|+++++++++.+.++++|++.++++++   .. .+.+
T Consensus       145 ~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~---~~-~~~~  219 (343)
T cd08236         145 AAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKE---ED-VEKV  219 (343)
T ss_pred             HHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCcc---cc-HHHH
Confidence            899999885 788999999999988999999999999999944999998889999998999999998876   55 6777


Q ss_pred             HhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCc-c-ccchhHhhhhCCceEEeeeccCCC--CCCcHH
Q 024295          149 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDA-M-VPLNVIALACGGRTLKGTTFGGIK--TKSDLP  224 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  224 (269)
                      .+..++.++|++||++|....+..++++++++ |+++.+|..... . ...+...++.++.++.++......  .++.++
T Consensus       220 ~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (343)
T cd08236         220 RELTEGRGADLVIEAAGSPATIEQALALARPG-GKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWR  298 (343)
T ss_pred             HHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeeccccccchhhHH
Confidence            77777768999999998766789999999996 999999865431 1 112233445688888887653221  135688


Q ss_pred             HHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcC-CCe-eeEEe
Q 024295          225 TLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ-PDC-VKVLI  267 (269)
Q Consensus       225 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~-~k~vl  267 (269)
                      ++++++.++++.+.+.+..++++++++++++.+.+ +.. .|+|+
T Consensus       299 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~  343 (343)
T cd08236         299 TALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL  343 (343)
T ss_pred             HHHHHHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence            89999999997644456678999999999999887 443 58764

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.96  E-value=1.9e-27  Score=203.08  Aligned_cols=246  Identities=22%  Similarity=0.256  Sum_probs=201.1

Q ss_pred             ccccCCceeeeecCeEEeeee-ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF-SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG   92 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~-~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G   92 (269)
                      -.+|+++..+++ ||+|++.. ..|+|++|+.++.+.++++|+++++++++.+++.+++||+++.....++++++|||+|
T Consensus        76 ~~vG~~v~~~~~-Gd~V~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g  154 (341)
T cd08290          76 VKVGSGVKSLKP-GDWVIPLRPGLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNG  154 (341)
T ss_pred             EEeCCCCCCCCC-CCEEEecCCCCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEcc
Confidence            345777778899 99998764 3589999999999999999999999999999999999999988778899999999998


Q ss_pred             C-ChhHHHHHHHHHHcCCCeEEEEcCCc----chHHHHHhCCCceeeCCCCCCCc---cHHHHHHhhhCCCCccEEEEcc
Q 024295           93 L-GTVGLGAVDGARMHGAAKIIGIDKNP----WKKEKGKAFGMTDFINPDDEPNK---SISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        93 ~-g~~G~~a~~la~~~g~~~v~~~~~~~----~~~~~~~~~g~~~v~~~~~~~~~---~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      + |++|++++|+|+..|+ +++++..++    ++.+.++++|+++++++.+   .   ++.+.++...++ ++|++||++
T Consensus       155 ~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~~~~~-~~d~vld~~  229 (341)
T cd08290         155 ANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERLKALGADHVLTEEE---LRSLLATELLKSAPGG-RPKLALNCV  229 (341)
T ss_pred             chhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHHHhcCCCEEEeCcc---cccccHHHHHHHHcCC-CceEEEECc
Confidence            6 9999999999999999 787777665    6688888899999998775   4   677888887777 899999999


Q ss_pred             CChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC-------CCcHHHHHHHHHCCCCCC
Q 024295          165 GVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT-------KSDLPTLLDKCKNKEFKL  237 (269)
Q Consensus       165 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~g~~~~  237 (269)
                      |+. .....+++++++ |+++.+|........++...++.++.++.+.....+..       ...+..+++++.++++.+
T Consensus       230 g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (341)
T cd08290         230 GGK-SATELARLLSPG-GTMVTYGGMSGQPVTVPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKA  307 (341)
T ss_pred             CcH-hHHHHHHHhCCC-CEEEEEeccCCCCcccCHHHHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccC
Confidence            986 667899999996 99999985432233455545566899999876543211       124778889999998765


Q ss_pred             CcceeEEe---ehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          238 HQLLTHHV---KLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       238 ~~~~~~~~---~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      .  ..+++   ++++++++++.+.++.. +|+|+++
T Consensus       308 ~--~~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~~  341 (341)
T cd08290         308 P--PVEKVTDDPLEEFKDALANALKGGGGGKQVLVM  341 (341)
T ss_pred             C--cccccccCCHHHHHHHHHHHhhcCCCCeEEEeC
Confidence            4  44567   99999999999887666 5999875

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.96  E-value=1.1e-27  Score=203.31  Aligned_cols=248  Identities=20%  Similarity=0.205  Sum_probs=196.0

Q ss_pred             cccCCceeeeecCeEEeee-eccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc-
Q 024295           15 LMLDSTSRMSVRGQKLYHI-FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG-   92 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~-~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G-   92 (269)
                      .+|+++..+.+ ||+|+.. ...|+|++|+.++.+.++++|+++++++++.+++.+++|++++...+.++++++|+|+| 
T Consensus        71 ~vG~~v~~~~~-Gd~V~~~~~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~  149 (327)
T PRK10754         71 KVGSGVKHIKV-GDRVVYAQSALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAA  149 (327)
T ss_pred             EeCCCCCCCCC-CCEEEECCCCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeC
Confidence            35777777888 9999754 34589999999999999999999999999998889999999988888999999999997 


Q ss_pred             CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHH
Q 024295           93 LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSE  172 (269)
Q Consensus        93 ~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~  172 (269)
                      +|.+|++++++++.+|+ +|+++++++++.+.++++|++++++.++   .++.+.+++.+++.++|+++|+++++ ....
T Consensus       150 ~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~~~~-~~~~  224 (327)
T PRK10754        150 AGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAWQVINYRE---ENIVERVKEITGGKKVRVVYDSVGKD-TWEA  224 (327)
T ss_pred             CcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEEcCCC---CcHHHHHHHHcCCCCeEEEEECCcHH-HHHH
Confidence            59999999999999999 8999999999999999999999998876   77888888888877999999999875 7788


Q ss_pred             HHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEE-eeec-cCCCCC----CcHHHHHHHHHCCCCCCCcceeEEee
Q 024295          173 ALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLK-GTTF-GGIKTK----SDLPTLLDKCKNKEFKLHQLLTHHVK  246 (269)
Q Consensus       173 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~----~~~~~~~~l~~~g~~~~~~~~~~~~~  246 (269)
                      .+++++++ |+++.+|........++...+..++..+. .... ......    +.++++++++.+|++++..+..+.|+
T Consensus       225 ~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~  303 (327)
T PRK10754        225 SLDCLQRR-GLMVSFGNASGPVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQKFP  303 (327)
T ss_pred             HHHHhccC-CEEEEEccCCCCCCCcCHHHHhccCceEEecceeecccCCHHHHHHHHHHHHHHHHCCCeeeecccCcEEc
Confidence            99999996 99999986642112233333322222111 1110 001111    23456889999999876555567899


Q ss_pred             hhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          247 LEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       247 ~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +++++++++.++++.. .|+|+.+
T Consensus       304 ~~~~~~a~~~~~~~~~~~~~~~~~  327 (327)
T PRK10754        304 LKDAQRAHEILESRATQGSSLLIP  327 (327)
T ss_pred             HHHHHHHHHHHHcCCCcceEEEeC
Confidence            9999999999987765 6999864

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.96  E-value=1.1e-26  Score=198.14  Aligned_cols=239  Identities=23%  Similarity=0.322  Sum_probs=192.3

Q ss_pred             cccCCceeeeecCeEEeee-------------------------e-------ccCcccceEeeccCceEEcCCCCCcccc
Q 024295           15 LMLDSTSRMSVRGQKLYHI-------------------------F-------SCSTWSEYMVIDANYVVKVDPSIDPSDA   62 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~-------------------------~-------~~g~~a~~~~v~~~~~~~vp~~~~~~~a   62 (269)
                      .+|+++.++++ ||+|+..                         .       .+|+|++|++++++.++++|++++++++
T Consensus        67 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~a  145 (339)
T cd08232          67 AVGPGVTGLAP-GQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRA  145 (339)
T ss_pred             eeCCCCCcCCC-CCEEEEccCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHh
Confidence            35778888988 9999852                         1       2589999999999999999999999998


Q ss_pred             cccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCc
Q 024295           63 SFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNK  142 (269)
Q Consensus        63 a~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  142 (269)
                      +. ..++++|++++.....+ ++++|||.|+|.+|++++|+++.+|+++++++++++++.+.++++|+++++++++   .
T Consensus       146 a~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~---~  220 (339)
T cd08232         146 AL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLAR---D  220 (339)
T ss_pred             hh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc---h
Confidence            76 56888999988666666 8999999988999999999999999867899998888888889999999998765   3


Q ss_pred             cHHHHHHhhh-CCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCC
Q 024295          143 SISELVKGIT-HGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKS  221 (269)
Q Consensus       143 ~~~~~i~~~~-~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (269)
                      ++    .++. ...++|+++|++|+...++.++++++++ |+++.+|... .....+...++.+++++.+...    ..+
T Consensus       221 ~~----~~~~~~~~~vd~vld~~g~~~~~~~~~~~L~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~  290 (339)
T cd08232         221 PL----AAYAADKGDFDVVFEASGAPAALASALRVVRPG-GTVVQVGMLG-GPVPLPLNALVAKELDLRGSFR----FDD  290 (339)
T ss_pred             hh----hhhhccCCCccEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC-CCccCcHHHHhhcceEEEEEec----CHH
Confidence            32    2222 2337999999998766789999999996 9999998544 2333444445558888877642    235


Q ss_pred             cHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          222 DLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       222 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      .+.++++++.++.+++.+.+.+++++++++++++.+..+.. +|+|+++
T Consensus       291 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~  339 (339)
T cd08232         291 EFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF  339 (339)
T ss_pred             HHHHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence            68889999999998766667789999999999999877654 6999875

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.96  E-value=2e-26  Score=199.14  Aligned_cols=245  Identities=24%  Similarity=0.308  Sum_probs=197.4

Q ss_pred             ccccCCceeeeecCeEEeeee-------------------------------------ccCcccceEeeccC--ceEEcC
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF-------------------------------------SCSTWSEYMVIDAN--YVVKVD   54 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~-------------------------------------~~g~~a~~~~v~~~--~~~~vp   54 (269)
                      -.+|+++..+++ ||+|+...                                     .+|+|+||++++..  .++++|
T Consensus        66 ~~vG~~v~~~~~-Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP  144 (375)
T cd08282          66 EEVGSAVESLKV-GDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLP  144 (375)
T ss_pred             EEeCCCCCcCCC-CCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECC
Confidence            335777777888 99987521                                     13889999999975  899999


Q ss_pred             CCCCcc---cccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc
Q 024295           55 PSIDPS---DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT  131 (269)
Q Consensus        55 ~~~~~~---~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~  131 (269)
                      ++++++   +++.+.+++++||+++ ..++++++++|+|.|+|++|++++|+++..|+++|+++++++++.+.++++|+.
T Consensus       145 ~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~  223 (375)
T cd08282         145 DRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI  223 (375)
T ss_pred             CCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCe
Confidence            999998   5677888999999998 788999999999998899999999999999986788899999999999999984


Q ss_pred             eeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChh-----------HHHHHHHHcccCCcEEEEEccCCCc-------
Q 024295          132 DFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS-----------LLSEALETTKVGKGKVIVIGVGVDA-------  193 (269)
Q Consensus       132 ~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~-----------~~~~~~~~l~~~~G~~v~~g~~~~~-------  193 (269)
                       .+++++   .++.+.+.+.++ .++|+++||+|.+.           .+..++++++++ |+++.+|.....       
T Consensus       224 -~v~~~~---~~~~~~i~~~~~-~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~g~~~~~~~~~~~~  297 (375)
T cd08282         224 -PIDFSD---GDPVEQILGLEP-GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPG-GGIGIVGVYVAEDPGAGDA  297 (375)
T ss_pred             -EeccCc---ccHHHHHHHhhC-CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcC-cEEEEEeccCCcccccccc
Confidence             567765   678888888777 48999999998763           478999999996 999988764310       


Q ss_pred             -----cccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEee
Q 024295          194 -----MVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT  268 (269)
Q Consensus       194 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~  268 (269)
                           ...++...+..++..+.+...   ..++.+..+++++.++++++..++++++++++++++|+.+.++...|+|++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~kvvv~  374 (375)
T cd08282         298 AAKQGELSFDFGLLWAKGLSFGTGQA---PVKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRLETKVVIK  374 (375)
T ss_pred             cccCccccccHHHHHhcCcEEEEecC---CchhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCCceEEEeC
Confidence                 123455555557776665532   123568889999999998765568899999999999999887775599986


Q ss_pred             C
Q 024295          269 I  269 (269)
Q Consensus       269 ~  269 (269)
                      +
T Consensus       375 ~  375 (375)
T cd08282         375 P  375 (375)
T ss_pred             C
Confidence            4

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.96  E-value=1.5e-26  Score=196.86  Aligned_cols=240  Identities=23%  Similarity=0.363  Sum_probs=195.2

Q ss_pred             cccCCceeeeecCeEEeee---------------------------eccCcccceEeeccCceEEcCCCCCccccccccc
Q 024295           15 LMLDSTSRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSC   67 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~   67 (269)
                      .+|+++..+++ ||+|++.                           ...|+|++|++++.+.++++|+++++.+++.+ .
T Consensus        66 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~  143 (334)
T cd08234          66 AVGSKVTGFKV-GDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-E  143 (334)
T ss_pred             EeCCCCCCCCC-CCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-h
Confidence            35778788888 9999761                           13589999999999999999999999998876 6


Q ss_pred             chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295           68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL  147 (269)
Q Consensus        68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  147 (269)
                      .+.++++++ ..++++++++|||+|+|.+|.+++++|+..|++.|+++++++++.+.++++|++.+++..+   .++...
T Consensus       144 ~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~  219 (334)
T cd08234         144 PLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSR---EDPEAQ  219 (334)
T ss_pred             HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCC---CCHHHH
Confidence            888999987 7889999999999988999999999999999944899999999999999999888888765   555444


Q ss_pred             HHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeeccCCCCCCcHHHH
Q 024295          148 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTL  226 (269)
Q Consensus       148 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (269)
                        ..+.+.++|+++|+++.......++++++++ |+++.+|.... ...+++...+..++.++.+....    .+.++++
T Consensus       220 --~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  292 (334)
T cd08234         220 --KEDNPYGFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAPDARVSISPFEIFQKELTIIGSFIN----PYTFPRA  292 (334)
T ss_pred             --HHhcCCCCcEEEECCCChHHHHHHHHHHhcC-CEEEEEecCCCCCCcccCHHHHHhCCcEEEEeccC----HHHHHHH
Confidence              3344458999999998766888999999996 99999986543 23445555555578888876532    2568899


Q ss_pred             HHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEe
Q 024295          227 LDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI  267 (269)
Q Consensus       227 ~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl  267 (269)
                      +++++++++++.+.+..++++++++++++.+.+...+|+|+
T Consensus       293 ~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi  333 (334)
T cd08234         293 IALLESGKIDVKGLVSHRLPLEEVPEALEGMRSGGALKVVV  333 (334)
T ss_pred             HHHHHcCCCChhhhEEEEecHHHHHHHHHHHhcCCceEEEe
Confidence            99999999876665778899999999999988733368876

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.96  E-value=7.6e-27  Score=198.88  Aligned_cols=241  Identities=15%  Similarity=0.188  Sum_probs=191.1

Q ss_pred             ccccCCceeeeecCeEEeeee---ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCC-----C
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEK-----G   85 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~-----~   85 (269)
                      -.+|+++.++++ ||+|++..   ..|+|++|++++++.++++|+++++++++.+++.+++||+++....++++     +
T Consensus        71 ~~vG~~v~~~~~-Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g  149 (336)
T TIGR02817        71 VAVGDEVTLFKP-GDEVWYAGDIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDK  149 (336)
T ss_pred             EEeCCCCCCCCC-CCEEEEcCCCCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCC
Confidence            346788888999 99998763   35899999999999999999999999999999999999999888888887     9


Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      ++|||+|+ |++|++++|+|+.+ |+ +|+++++++++.+.++++|+++++++.    .++.+.+++.. +.++|+++|+
T Consensus       150 ~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~~g~~~~~~~~----~~~~~~i~~~~-~~~vd~vl~~  223 (336)
T TIGR02817       150 RALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLELGAHHVIDHS----KPLKAQLEKLG-LEAVSYVFSL  223 (336)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHHcCCCEEEECC----CCHHHHHHHhc-CCCCCEEEEc
Confidence            99999985 99999999999998 99 999999899999999999999998764    35667777653 3489999999


Q ss_pred             cCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeecc--CCCC-------CCcHHHHHHHHHCCC
Q 024295          164 TGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFG--GIKT-------KSDLPTLLDKCKNKE  234 (269)
Q Consensus       164 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~l~~~g~  234 (269)
                      +++.......+++++++ |+++.++..    ..++...+..++.++.+..+.  ....       .+.++++++++.++.
T Consensus       224 ~~~~~~~~~~~~~l~~~-G~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  298 (336)
T TIGR02817       224 THTDQHFKEIVELLAPQ-GRFALIDDP----AELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGK  298 (336)
T ss_pred             CCcHHHHHHHHHHhccC-CEEEEEccc----ccccchhhhhcceEEEEEEeecccccchhhhhhhHHHHHHHHHHHHCCC
Confidence            87666889999999996 999988532    233444444455666653322  1100       134678999999998


Q ss_pred             CCCCcceeEEe---ehhhHHHHHHHhcCCCe-eeEEee
Q 024295          235 FKLHQLLTHHV---KLEEIDKAIQLLKQPDC-VKVLIT  268 (269)
Q Consensus       235 ~~~~~~~~~~~---~~~~~~~a~~~~~~~~~-~k~vl~  268 (269)
                      +++.  +.+.+   +++++++|++.+.++.. +|++++
T Consensus       299 l~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~  334 (336)
T TIGR02817       299 IRTT--LAETFGTINAANLKRAHALIESGKARGKIVLE  334 (336)
T ss_pred             eecc--chhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence            6542  34445   47899999999988765 588764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.95  E-value=1.8e-26  Score=196.76  Aligned_cols=240  Identities=23%  Similarity=0.338  Sum_probs=195.0

Q ss_pred             cccCCceeeeecCeEEeee----------------------------eccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295           15 LMLDSTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLS   66 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~   66 (269)
                      .+|+++..+.+ ||+|+..                            ..+|+|+||+.++...++++|+++++++++.++
T Consensus        67 ~~G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~  145 (338)
T PRK09422         67 EVGPGVTSLKV-GDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKVPEGLDPAQASSIT  145 (338)
T ss_pred             EECCCCccCCC-CCEEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeCCCCCCHHHeehhh
Confidence            35777778888 9999751                            125899999999999999999999999999999


Q ss_pred             cchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHH
Q 024295           67 CGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSIS  145 (269)
Q Consensus        67 ~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  145 (269)
                      +.++|||+++ ..++++++++|||+|+|++|++++++++.. |+ +|+++++++++.+.++++|++.+++++.  ..++.
T Consensus       146 ~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~  221 (338)
T PRK09422        146 CAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTINSKR--VEDVA  221 (338)
T ss_pred             cchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHcCCcEEecccc--cccHH
Confidence            9999999997 778899999999999999999999999984 99 8999999999999999999998888752  14566


Q ss_pred             HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHH
Q 024295          146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPT  225 (269)
Q Consensus       146 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (269)
                      +.+++..+  ++|.++++.++...+..++++++.+ |+++.+|.... ..+++...+..++.++.++...   .++.++.
T Consensus       222 ~~v~~~~~--~~d~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  294 (338)
T PRK09422        222 KIIQEKTG--GAHAAVVTAVAKAAFNQAVDAVRAG-GRVVAVGLPPE-SMDLSIPRLVLDGIEVVGSLVG---TRQDLEE  294 (338)
T ss_pred             HHHHHhcC--CCcEEEEeCCCHHHHHHHHHhccCC-CEEEEEeeCCC-CceecHHHHhhcCcEEEEecCC---CHHHHHH
Confidence            77777655  6896655555556889999999996 99999986543 3344555566688888776532   2367889


Q ss_pred             HHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          226 LLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       226 ~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +++++.++++..  .+. .+++++++++|+.+.++.. +|+++++
T Consensus       295 ~~~l~~~g~l~~--~v~-~~~~~~~~~a~~~~~~~~~~gkvvv~~  336 (338)
T PRK09422        295 AFQFGAEGKVVP--KVQ-LRPLEDINDIFDEMEQGKIQGRMVIDF  336 (338)
T ss_pred             HHHHHHhCCCCc--cEE-EEcHHHHHHHHHHHHcCCccceEEEec
Confidence            999999998643  354 5899999999999988766 5888753

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=9.6e-27  Score=195.60  Aligned_cols=237  Identities=22%  Similarity=0.294  Sum_probs=192.4

Q ss_pred             ccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC
Q 024295           14 GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL   93 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~   93 (269)
                      -.+|+++..+.+ ||+|++...+|+|++|+.++.++++++|+++++++++.+++.+.+||+++...... ++++|+|+|+
T Consensus        64 ~~~G~~v~~~~~-Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~  141 (305)
T cd08270          64 ERAAADGSGPAV-GARVVGLGAMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGA  141 (305)
T ss_pred             EEeCCCCCCCCC-CCEEEEecCCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECC
Confidence            335777777888 99999887679999999999999999999999999999999999999998665555 5999999987


Q ss_pred             -ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHH
Q 024295           94 -GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSE  172 (269)
Q Consensus        94 -g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~  172 (269)
                       |++|.+++++++..|+ +|+.+++++++.+.++++|++..++..+           ++.++ ++|+++|++|+. ....
T Consensus       142 ~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~-----------~~~~~-~~d~vl~~~g~~-~~~~  207 (305)
T cd08270         142 SGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAAEVVVGGS-----------ELSGA-PVDLVVDSVGGP-QLAR  207 (305)
T ss_pred             CcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEeccc-----------cccCC-CceEEEECCCcH-HHHH
Confidence             9999999999999999 8999999999999999999876654321           12233 799999999986 7799


Q ss_pred             HHHHcccCCcEEEEEccCCCccccchhHhhhh--CCceEEeeeccC-CCCCCcHHHHHHHHHCCCCCCCcceeEEeehhh
Q 024295          173 ALETTKVGKGKVIVIGVGVDAMVPLNVIALAC--GGRTLKGTTFGG-IKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEE  249 (269)
Q Consensus       173 ~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  249 (269)
                      ++++++++ |+++.+|........++...+..  ++.++.++.... ....+.+..+++++.++++++.  +.+++++++
T Consensus       208 ~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~  284 (305)
T cd08270         208 ALELLAPG-GTVVSVGSSSGEPAVFNPAAFVGGGGGRRLYTFFLYDGEPLAADLARLLGLVAAGRLDPR--IGWRGSWTE  284 (305)
T ss_pred             HHHHhcCC-CEEEEEeccCCCcccccHHHHhcccccceEEEEEccCHHHHHHHHHHHHHHHHCCCccce--eccEEcHHH
Confidence            99999996 99999986543233455555553  588888876543 1112467889999999997643  667899999


Q ss_pred             HHHHHHHhcCCCe-eeEEeeC
Q 024295          250 IDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       250 ~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++++.+.++.. +|+|+++
T Consensus       285 ~~~a~~~~~~~~~~gkvvi~~  305 (305)
T cd08270         285 IDEAAEALLARRFRGKAVLDV  305 (305)
T ss_pred             HHHHHHHHHcCCCCceEEEeC
Confidence            9999999987766 5999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.95  E-value=2.9e-26  Score=197.43  Aligned_cols=244  Identities=22%  Similarity=0.386  Sum_probs=193.3

Q ss_pred             ccCCceeeeecCeEEeee------------------------e----ccCcccceEeeccCceEEcCCCCCccccccccc
Q 024295           16 MLDSTSRMSVRGQKLYHI------------------------F----SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSC   67 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~------------------------~----~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~   67 (269)
                      +|+++..+++ ||+|++.                        .    .+|+|+||++++...++++|++++++++++. .
T Consensus        88 vG~~v~~~~~-Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~-~  165 (364)
T PLN02702         88 VGSEVKHLVV-GDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMC-E  165 (364)
T ss_pred             ECCCCCCCCC-CCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHhhh-h
Confidence            5777777888 9999752                        1    1589999999999999999999999988763 2


Q ss_pred             chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295           68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL  147 (269)
Q Consensus        68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  147 (269)
                      ++.++++++ ...++.++++|||+|+|++|++++++++..|+..++++++++++.+.++++|++.++++.. ...++.+.
T Consensus       166 ~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~  243 (364)
T PLN02702        166 PLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVST-NIEDVESE  243 (364)
T ss_pred             HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEecCc-ccccHHHH
Confidence            566688876 7788999999999999999999999999999967888988889999999999988765431 01456666


Q ss_pred             HHhh--hCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHH
Q 024295          148 VKGI--THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPT  225 (269)
Q Consensus       148 i~~~--~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (269)
                      +.++  ..+.++|++||++|++..+..++++++++ |+++.+|.... ..++....+..+++++.+++..    +..+..
T Consensus       244 ~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~----~~~~~~  317 (364)
T PLN02702        244 VEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVGMGHN-EMTVPLTPAAAREVDVVGVFRY----RNTWPL  317 (364)
T ss_pred             HHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCCC-CCcccHHHHHhCccEEEEeccC----hHHHHH
Confidence            6554  22348999999999766889999999996 99999986542 2334455666789999886532    256888


Q ss_pred             HHHHHHCCCCCCCcceeEEeeh--hhHHHHHHHhcCCCe-eeEEeeC
Q 024295          226 LLDKCKNKEFKLHQLLTHHVKL--EEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       226 ~~~l~~~g~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++++++++.+.++++++|++  ++++++++.+.++.. +|+++.+
T Consensus       318 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~~  364 (364)
T PLN02702        318 CLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFNL  364 (364)
T ss_pred             HHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEeC
Confidence            9999999998766667788655  799999999887655 6999863

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.95  E-value=1.2e-26  Score=197.77  Aligned_cols=234  Identities=22%  Similarity=0.403  Sum_probs=194.5

Q ss_pred             ccCCceeeeecCeEEeee-----------------------------------eccCcccceEeeccCceEEcCCCCCcc
Q 024295           16 MLDSTSRMSVRGQKLYHI-----------------------------------FSCSTWSEYMVIDANYVVKVDPSIDPS   60 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~-----------------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~   60 (269)
                      +|+++.++++ ||+|+..                                   ...|+|+||+.++.+.++++|++++++
T Consensus        68 vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~  146 (337)
T cd05283          68 VGSKVTKFKV-GDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSA  146 (337)
T ss_pred             ECCCCcccCC-CCEEEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHH
Confidence            5778888888 9998621                                   335899999999999999999999999


Q ss_pred             cccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCC
Q 024295           61 DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEP  140 (269)
Q Consensus        61 ~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~  140 (269)
                      +++.+.+.+.+||+++.. ..++++++++|.|+|++|++++++++..|+ +++++++++++.+.++++|++.+++..+  
T Consensus       147 ~aa~l~~~~~ta~~~~~~-~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~vi~~~~--  222 (337)
T cd05283         147 AAAPLLCAGITVYSPLKR-NGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADEFIATKD--  222 (337)
T ss_pred             HhhhhhhHHHHHHHHHHh-cCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEecCcc--
Confidence            999999999999998754 568999999999889999999999999999 9999999999999999999998888764  


Q ss_pred             CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCC
Q 024295          141 NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTK  220 (269)
Q Consensus       141 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (269)
                       .++.+.   .  +.++|++||+++.+.....++++++++ |+++.+|.... ..+++...++.++.++.++....   .
T Consensus       223 -~~~~~~---~--~~~~d~v~~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~~---~  291 (337)
T cd05283         223 -PEAMKK---A--AGSLDLIIDTVSASHDLDPYLSLLKPG-GTLVLVGAPEE-PLPVPPFPLIFGRKSVAGSLIGG---R  291 (337)
T ss_pred             -hhhhhh---c--cCCceEEEECCCCcchHHHHHHHhcCC-CEEEEEeccCC-CCccCHHHHhcCceEEEEecccC---H
Confidence             333222   1  238999999999875578999999996 99999997653 33566666667999999987543   3


Q ss_pred             CcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295          221 SDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT  268 (269)
Q Consensus       221 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~  268 (269)
                      +.+..+++++.++++++  .+ ++++++++++||+.+.++.. +|+|++
T Consensus       292 ~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~~k~v~~  337 (337)
T cd05283         292 KETQEMLDFAAEHGIKP--WV-EVIPMDGINEALERLEKGDVRYRFVLD  337 (337)
T ss_pred             HHHHHHHHHHHhCCCcc--ce-EEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence            67899999999998654  34 68999999999999988776 698874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.95  E-value=7.2e-28  Score=217.96  Aligned_cols=236  Identities=19%  Similarity=0.259  Sum_probs=201.9

Q ss_pred             CeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEE-cCChhHHHHHHHHH
Q 024295           27 GQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVL-GLGTVGLGAVDGAR  105 (269)
Q Consensus        27 Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~-G~g~~G~~a~~la~  105 (269)
                      |.||.++...-++|+.+.++.+++|.+|.+..+++|++.|+.|.|||++|+.+++.++|+++||+ |+|++|++|+.+|.
T Consensus      1495 GrRvM~mvpAksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiAL 1574 (2376)
T KOG1202|consen 1495 GRRVMGMVPAKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIAL 1574 (2376)
T ss_pred             CcEEEEeeehhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHH
Confidence            88888877767899999999999999999999999999999999999999999999999999999 57999999999999


Q ss_pred             HcCCCeEEEEcCCcchHHHHHh-CC---CceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCC
Q 024295          106 MHGAAKIIGIDKNPWKKEKGKA-FG---MTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK  181 (269)
Q Consensus       106 ~~g~~~v~~~~~~~~~~~~~~~-~g---~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~  181 (269)
                      +.|+ .|+.+..++||++++.. |.   ..++-|+++   .+|+..++.-|.|+|+|+|++....+ .++.+++|++-. 
T Consensus      1575 a~G~-~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRd---tsFEq~vl~~T~GrGVdlVLNSLaeE-kLQASiRCLa~~- 1648 (2376)
T KOG1202|consen 1575 AHGC-TVFTTVGSAEKREFLLKRFPQLQETNFANSRD---TSFEQHVLWHTKGRGVDLVLNSLAEE-KLQASIRCLALH- 1648 (2376)
T ss_pred             HcCC-EEEEecCcHHHHHHHHHhchhhhhhccccccc---ccHHHHHHHHhcCCCeeeehhhhhHH-HHHHHHHHHHhc-
Confidence            9999 99999999999999865 33   467888887   99999999999999999999999776 789999999995 


Q ss_pred             cEEEEEccCCC-ccccchhHhhhhCCceEEeeeccCCC--CCCcHHHHHHHHHCCCC--CCCcceeEEeehhhHHHHHHH
Q 024295          182 GKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGIK--TKSDLPTLLDKCKNKEF--KLHQLLTHHVKLEEIDKAIQL  256 (269)
Q Consensus       182 G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~--~~~~~~~~~~~~~~~~~a~~~  256 (269)
                      |++..+|.... ...++.+.-|+ ||.+++|.-....-  ..+.+.++..++++|.-  .+.|+.+++|+-.++++||++
T Consensus      1649 GRFLEIGKfDLSqNspLGMavfL-kNvsfHGiLLDsvmege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRf 1727 (2376)
T KOG1202|consen 1649 GRFLEIGKFDLSQNSPLGMAVFL-KNVSFHGILLDSVMEGEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRF 1727 (2376)
T ss_pred             CeeeeecceecccCCcchhhhhh-cccceeeeehhhhhcCcHHHHHHHHHHHHhhhccCceeccccccccHHHHHHHHHH
Confidence            99999997664 34455554555 99999997654432  22456677777766533  266778999999999999999


Q ss_pred             hcCCCee-eEEeeC
Q 024295          257 LKQPDCV-KVLITI  269 (269)
Q Consensus       257 ~~~~~~~-k~vl~~  269 (269)
                      |.+++++ |+|+++
T Consensus      1728 MasGKHIGKVvikv 1741 (2376)
T KOG1202|consen 1728 MASGKHIGKVVIKV 1741 (2376)
T ss_pred             HhccCccceEEEEE
Confidence            9999985 999863

>cd05281 TDH Threonine dehydrogenase

Probab=99.95  E-value=4e-26  Score=194.93  Aligned_cols=242  Identities=26%  Similarity=0.409  Sum_probs=194.2

Q ss_pred             ccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCcccccccccc
Q 024295           16 MLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCG   68 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~   68 (269)
                      +|+++..+++ ||+|+++.                           ..|+|++|++++.+.++++|++++.+.+ .+..+
T Consensus        72 ~G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP~~~~~~~a-~~~~~  149 (341)
T cd05281          72 VGEGVTRVKV-GDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKNDKDIPPEIA-SIQEP  149 (341)
T ss_pred             ECCCCCCCCC-CCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECcCCCCHHHh-hhhhH
Confidence            5677777888 99998741                           3489999999999999999999998555 45567


Q ss_pred             hhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHH
Q 024295           69 FTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELV  148 (269)
Q Consensus        69 ~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  148 (269)
                      +.++++++.  ...+++++|||.|+|++|++++|+++..|.++|+++++++++.+.++++|+++++++++   .++. .+
T Consensus       150 ~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~-~~  223 (341)
T cd05281         150 LGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPRE---EDVV-EV  223 (341)
T ss_pred             HHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCccc---ccHH-HH
Confidence            888888764  45578999999988999999999999999867888888889999999999998888775   6777 78


Q ss_pred             HhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhH-hhhhCCceEEeeeccCCCCCCcHHHHH
Q 024295          149 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVI-ALACGGRTLKGTTFGGIKTKSDLPTLL  227 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (269)
                      .+..++.++|++||++|.......++++++++ |+++.+|.... ...++.. ....++..+.+.....  ..+.+.+++
T Consensus       224 ~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  299 (341)
T cd05281         224 KSVTDGTGVDVVLEMSGNPKAIEQGLKALTPG-GRVSILGLPPG-PVDIDLNNLVIFKGLTVQGITGRK--MFETWYQVS  299 (341)
T ss_pred             HHHcCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEccCCC-CcccccchhhhccceEEEEEecCC--cchhHHHHH
Confidence            88777779999999998876789999999996 99999986543 2222222 2455788887765222  235678899


Q ss_pred             HHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          228 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       228 ~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      +++.++.+++.+.+..++++++++++|+.+.++..+|+|+++
T Consensus       300 ~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~gk~vv~~  341 (341)
T cd05281         300 ALLKSGKVDLSPVITHKLPLEDFEEAFELMRSGKCGKVVLYP  341 (341)
T ss_pred             HHHHcCCCChhHheEEEecHHHHHHHHHHHhcCCCceEEecC
Confidence            999999987666677889999999999998877655999874

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.95  E-value=5.3e-26  Score=191.65  Aligned_cols=245  Identities=23%  Similarity=0.286  Sum_probs=201.3

Q ss_pred             ccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-C
Q 024295           16 MLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-G   94 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g   94 (269)
                      +|+++.++++ ||+|+++...|++++|+.++.+.++++|++++..+++.+++.+++|++++....+++++++|||+|+ |
T Consensus        69 ~g~~~~~~~~-G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g  147 (320)
T cd05286          69 VGPGVTGFKV-GDRVAYAGPPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAG  147 (320)
T ss_pred             ECCCCCCCCC-CCEEEEecCCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCc
Confidence            5777778888 9999987535889999999999999999999999999999999999999888889999999999995 9


Q ss_pred             hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHH
Q 024295           95 TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL  174 (269)
Q Consensus        95 ~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~  174 (269)
                      ++|++++++++.+|+ +|+++++++++.+.++++|++++++..+   .++.+.+..++++.++|+++|++++. ....++
T Consensus       148 ~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vl~~~~~~-~~~~~~  222 (320)
T cd05286         148 GVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVINYRD---EDFVERVREITGGRGVDVVYDGVGKD-TFEGSL  222 (320)
T ss_pred             hHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCEEEeCCc---hhHHHHHHHHcCCCCeeEEEECCCcH-hHHHHH
Confidence            999999999999999 8999999999999999999988888775   67888888887777899999999885 778999


Q ss_pred             HHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCC-----CcHHHHHHHHHCCCCCCCcceeEEeehhh
Q 024295          175 ETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTK-----SDLPTLLDKCKNKEFKLHQLLTHHVKLEE  249 (269)
Q Consensus       175 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  249 (269)
                      ++++++ |+++.+|........++...+..+++++.+.....+...     +.+.++++++.++.+.+.  ..+.|++++
T Consensus       223 ~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~  299 (320)
T cd05286         223 DSLRPR-GTLVSFGNASGPVPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVASGKLKVE--IGKRYPLAD  299 (320)
T ss_pred             HhhccC-cEEEEEecCCCCCCccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcCc--ccceEcHHH
Confidence            999996 999999865432223444444468888876543322211     234568888989886643  567899999


Q ss_pred             HHHHHHHhcCCCe-eeEEeeC
Q 024295          250 IDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       250 ~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++++.+.++.. .|+++++
T Consensus       300 ~~~a~~~~~~~~~~~~vv~~~  320 (320)
T cd05286         300 AAQAHRDLESRKTTGKLLLIP  320 (320)
T ss_pred             HHHHHHHHHcCCCCceEEEeC
Confidence            9999999887665 5888764

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=5.5e-26  Score=193.37  Aligned_cols=244  Identities=25%  Similarity=0.371  Sum_probs=203.1

Q ss_pred             cccCCceeeeecCeEEeeeec---------------------cCcccceEeeccCceEEcCCCCCcccccccccchhhhH
Q 024295           15 LMLDSTSRMSVRGQKLYHIFS---------------------CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGY   73 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~~---------------------~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~   73 (269)
                      .+|.++.++++ ||+|++...                     .|+|++|+.++.+.++++|+++++.+++.+++.+.+|+
T Consensus        71 ~~G~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~  149 (336)
T cd08276          71 AVGEGVTRFKV-GDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAW  149 (336)
T ss_pred             EeCCCCcCCCC-CCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHH
Confidence            34667777888 999987641                     57899999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhC
Q 024295           74 GAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        74 ~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      +++...+.++++++|+|+|+|++|++++++++..|+ +|+++++++++.+.++++|.+.+++...  ..++.+.+++.++
T Consensus       150 ~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~  226 (336)
T cd08276         150 NALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINYRT--TPDWGEEVLKLTG  226 (336)
T ss_pred             HHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEcCCc--ccCHHHHHHHHcC
Confidence            998888899999999999889999999999999999 8999999999999999999998887653  1457777888887


Q ss_pred             CCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCC
Q 024295          154 GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNK  233 (269)
Q Consensus       154 ~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  233 (269)
                      +.++|+++|+++.. ....++++++++ |+++.+|.............++.+++++.+.....   .+.+.++++++.++
T Consensus       227 ~~~~d~~i~~~~~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~  301 (336)
T cd08276         227 GRGVDHVVEVGGPG-TLAQSIKAVAPG-GVISLIGFLSGFEAPVLLLPLLTKGATLRGIAVGS---RAQFEAMNRAIEAH  301 (336)
T ss_pred             CCCCcEEEECCChH-HHHHHHHhhcCC-CEEEEEccCCCCccCcCHHHHhhcceEEEEEecCc---HHHHHHHHHHHHcC
Confidence            77999999999865 778999999996 99999987654222344555667999999887543   35788899999888


Q ss_pred             CCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          234 EFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      .+..  .+.+++++++++++++.+.++.. .|++++.
T Consensus       302 ~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  336 (336)
T cd08276         302 RIRP--VIDRVFPFEEAKEAYRYLESGSHFGKVVIRV  336 (336)
T ss_pred             Cccc--ccCcEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            7653  35678999999999998887665 5888763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=5.3e-26  Score=192.38  Aligned_cols=211  Identities=21%  Similarity=0.303  Sum_probs=175.7

Q ss_pred             cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295           36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI  115 (269)
Q Consensus        36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~  115 (269)
                      +|+|++|++++++.++++|++++.++++.+ .++.+++.+ ....+++++++|||+|+|.+|++++|+++.+|+ +|+++
T Consensus       109 ~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~~-~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~  185 (319)
T cd08242         109 DGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAALEI-LEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLV  185 (319)
T ss_pred             CCceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEE
Confidence            589999999999999999999999888864 455566654 577889999999999999999999999999999 79999


Q ss_pred             cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccc
Q 024295          116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMV  195 (269)
Q Consensus       116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  195 (269)
                      ++++++.+.++++|++.++++++   .         +++.++|+++|++|+...+..++++++++ |+++..+... ...
T Consensus       186 ~~~~~~~~~~~~~g~~~~~~~~~---~---------~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~~~~~-~~~  251 (319)
T cd08242         186 GRHSEKLALARRLGVETVLPDEA---E---------SEGGGFDVVVEATGSPSGLELALRLVRPR-GTVVLKSTYA-GPA  251 (319)
T ss_pred             cCCHHHHHHHHHcCCcEEeCccc---c---------ccCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccC-CCC
Confidence            99999999999999988877653   1         23458999999998866788999999996 9999877544 244


Q ss_pred             cchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          196 PLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      .++...+..++.++.+...      ..++++++++.++++++.+.+++.|++++++++|+.++++..+|+|+++
T Consensus       252 ~~~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~vi~~  319 (319)
T cd08242         252 SFDLTKAVVNEITLVGSRC------GPFAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPGALKVLLRP  319 (319)
T ss_pred             ccCHHHheecceEEEEEec------ccHHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCCceEEEeCC
Confidence            5566566678888887653      2388899999999987666788999999999999998876667999874

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.95  E-value=4.4e-26  Score=193.40  Aligned_cols=240  Identities=19%  Similarity=0.208  Sum_probs=184.0

Q ss_pred             CceeeeecCeEEeeee------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHh--cCCC-CCCeEE
Q 024295           19 STSRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKE--AKVE-KGSSVA   89 (269)
Q Consensus        19 ~~~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~--~~~~-~~~~vl   89 (269)
                      ++.++.+ ||+|+...      .+|+|++|++++++.++++|+++++++++.+++.+.+|++++...  ..+. ++++||
T Consensus        73 ~~~~~~~-Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vl  151 (326)
T cd08289          73 NDPRFKP-GDEVIVTSYDLGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVL  151 (326)
T ss_pred             CCCCCCC-CCEEEEcccccCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEE
Confidence            4456788 99998764      368999999999999999999999999999999999999887543  2333 478999


Q ss_pred             EEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChh
Q 024295           90 VLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS  168 (269)
Q Consensus        90 I~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~  168 (269)
                      |+|+ |++|++++|+|+.+|+ +|+++++++++.+.++++|++.+++.++   . ..+.+.+.. +.++|++||++|+. 
T Consensus       152 I~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~-~~~~~~~~~-~~~~d~vld~~g~~-  224 (326)
T cd08289         152 VTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAKEVIPREE---L-QEESIKPLE-KQRWAGAVDPVGGK-  224 (326)
T ss_pred             EEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCEEEcchh---H-HHHHHHhhc-cCCcCEEEECCcHH-
Confidence            9997 9999999999999999 8999999999999999999988888764   3 345565554 34899999999985 


Q ss_pred             HHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCC---CCcceeEEe
Q 024295          169 LLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFK---LHQLLTHHV  245 (269)
Q Consensus       169 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~---~~~~~~~~~  245 (269)
                      .+...+++++++ |+++.+|.......+++...++.++.++.+...... ......++++.+.+ .+.   ....+.+++
T Consensus       225 ~~~~~~~~l~~~-G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  301 (326)
T cd08289         225 TLAYLLSTLQYG-GSVAVSGLTGGGEVETTVFPFILRGVNLLGIDSVEC-PMELRRRIWRRLAT-DLKPTQLLNEIKQEI  301 (326)
T ss_pred             HHHHHHHHhhcC-CEEEEEeecCCCCCCcchhhhhhccceEEEEEeEec-CchHHHHHHHHHHh-hcCccccccccceEe
Confidence            789999999996 999999976432334445556568999998753221 01123334333332 221   122357899


Q ss_pred             ehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          246 KLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       246 ~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++++++|+.+.+++. +|+|+++
T Consensus       302 ~l~~~~~a~~~~~~~~~~gkvvv~~  326 (326)
T cd08289         302 TLDELPEALKQILQGRVTGRTVVKL  326 (326)
T ss_pred             eHHHHHHHHHHHhcCcccceEEEeC
Confidence            99999999999988776 5988864

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.95  E-value=8.5e-26  Score=191.46  Aligned_cols=239  Identities=19%  Similarity=0.226  Sum_probs=184.2

Q ss_pred             CceeeeecCeEEeeee------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcC--CC-CCCeEE
Q 024295           19 STSRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAK--VE-KGSSVA   89 (269)
Q Consensus        19 ~~~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~--~~-~~~~vl   89 (269)
                      ++..+++ ||+|++..      .+|+|++|++++++.++++|+++++++++.+++.+.+|++++....+  ++ .+++|+
T Consensus        73 ~~~~~~~-Gd~V~~~~~~~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vl  151 (325)
T cd05280          73 DDPRFRE-GDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVL  151 (325)
T ss_pred             CCCCCCC-CCEEEEcccccCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEE
Confidence            3455778 99998652      36899999999999999999999999999999999999998765443  35 357999


Q ss_pred             EEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChh
Q 024295           90 VLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS  168 (269)
Q Consensus        90 I~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~  168 (269)
                      |+|+ |++|++++++|+.+|+ +|+++++++++.+.++++|++++++..+   .  .....+...+.++|++||+++++ 
T Consensus       152 I~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~--~~~~~~~~~~~~~d~vi~~~~~~-  224 (325)
T cd05280         152 VTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGASEVLDRED---L--LDESKKPLLKARWAGAIDTVGGD-  224 (325)
T ss_pred             EECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEcchh---H--HHHHHHHhcCCCccEEEECCchH-
Confidence            9997 9999999999999999 7999999999999999999999887653   2  12233333344799999999885 


Q ss_pred             HHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCC---CcHHHHHHHHHCCCCCCCcceeEEe
Q 024295          169 LLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTK---SDLPTLLDKCKNKEFKLHQLLTHHV  245 (269)
Q Consensus       169 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~g~~~~~~~~~~~~  245 (269)
                      .+..++++++++ |+++.+|.....+..++...++.++.++.+.........   +.++.+.+++..+..   +.+.+++
T Consensus       225 ~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  300 (325)
T cd05280         225 VLANLLKQTKYG-GVVASCGNAAGPELTTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLATEWKPDLL---EIVVREI  300 (325)
T ss_pred             HHHHHHHhhcCC-CEEEEEecCCCCccccccchheeeeeEEEEEEeecCchhHHHHHHHHHHHHHhcCCc---cceeeEe
Confidence            789999999996 999999976532234555555568999988765433210   123344444555532   2367789


Q ss_pred             ehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          246 KLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       246 ~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++++++++.+..+.. +|+|+++
T Consensus       301 ~~~~~~~a~~~~~~~~~~gk~vv~~  325 (325)
T cd05280         301 SLEELPEAIDRLLAGKHRGRTVVKI  325 (325)
T ss_pred             cHHHHHHHHHHHhcCCcceEEEEeC
Confidence            99999999999988776 5998874

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.95  E-value=9.7e-26  Score=190.51  Aligned_cols=234  Identities=20%  Similarity=0.321  Sum_probs=188.9

Q ss_pred             eeeeecCeEEeeee------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-
Q 024295           21 SRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-   93 (269)
Q Consensus        21 ~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-   93 (269)
                      ..+++ ||+|++..      .+|+|++|+.+++..++++|+++++++++.+++++.+||+++.....++++++|||+|+ 
T Consensus        74 ~~~~~-Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~  152 (320)
T cd08243          74 GTFTP-GQRVATAMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGT  152 (320)
T ss_pred             CCCCC-CCEEEEecCCCCCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence            45778 99998764      24899999999999999999999999999999999999999988888999999999996 


Q ss_pred             ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHH
Q 024295           94 GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA  173 (269)
Q Consensus        94 g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  173 (269)
                      |++|++++|+|+..|+ +|+++++++++.+.++++|++++++. .   .++.+.++++  +.++|+++|++++. .+...
T Consensus       153 g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~-~---~~~~~~i~~~--~~~~d~vl~~~~~~-~~~~~  224 (320)
T cd08243         153 SSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVVID-D---GAIAEQLRAA--PGGFDKVLELVGTA-TLKDS  224 (320)
T ss_pred             ChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEec-C---ccHHHHHHHh--CCCceEEEECCChH-HHHHH
Confidence            9999999999999999 89999999999999999999888754 3   5677778777  44899999999975 78999


Q ss_pred             HHHcccCCcEEEEEccCCC-cc-ccchhHhhh--hCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhh
Q 024295          174 LETTKVGKGKVIVIGVGVD-AM-VPLNVIALA--CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEE  249 (269)
Q Consensus       174 ~~~l~~~~G~~v~~g~~~~-~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~  249 (269)
                      +++++++ |+++.+|.... .. .........  .++.++.++...... .+.+..++++++++.+++  .+.+.+++++
T Consensus       225 ~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~l~~  300 (320)
T cd08243         225 LRHLRPG-GIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSGDVP-QTPLQELFDFVAAGHLDI--PPSKVFTFDE  300 (320)
T ss_pred             HHHhccC-CEEEEEccCCCCcccCCcchhhhhhhccceEEEecchhhhh-HHHHHHHHHHHHCCceec--ccccEEcHHH
Confidence            9999996 99999986432 11 111112222  467777766543221 235778899999998664  3567899999


Q ss_pred             HHHHHHHhcCCCe-eeEEe
Q 024295          250 IDKAIQLLKQPDC-VKVLI  267 (269)
Q Consensus       250 ~~~a~~~~~~~~~-~k~vl  267 (269)
                      ++++++.+.++.. +|+++
T Consensus       301 ~~~a~~~~~~~~~~~kvvv  319 (320)
T cd08243         301 IVEAHAYMESNRAFGKVVV  319 (320)
T ss_pred             HHHHHHHHHhCCCCCcEEe
Confidence            9999999887665 47775

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.95  E-value=1.6e-25  Score=191.11  Aligned_cols=239  Identities=21%  Similarity=0.302  Sum_probs=190.0

Q ss_pred             ccccCCceeeeecCeEEeeeec--------cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCC---
Q 024295           14 GLMLDSTSRMSVRGQKLYHIFS--------CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV---   82 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~~--------~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~---   82 (269)
                      -.+|+++..+++ ||+|+++..        +|+|++|++++.+.++++|+++++++++.+++++.+||+++....++   
T Consensus        67 ~~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~  145 (339)
T cd08249          67 VEVGSGVTRFKV-GDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLP  145 (339)
T ss_pred             EEeCCCcCcCCC-CCEEEEEeccccCCCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCC
Confidence            336777788888 999998753        48999999999999999999999999999999999999998766544   


Q ss_pred             -------CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCC
Q 024295           83 -------EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        83 -------~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                             +++++|||+|+ |++|++++++++..|+ +|+++. ++++.+.++++|++++++..+   .++.+.+++.+++
T Consensus       146 ~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~~g~~~v~~~~~---~~~~~~l~~~~~~  220 (339)
T cd08249         146 PPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVKSLGADAVFDYHD---PDVVEDIRAATGG  220 (339)
T ss_pred             CCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHHhcCCCEEEECCC---chHHHHHHHhcCC
Confidence                   78999999996 8999999999999999 888887 568999999999999998876   7788888887764


Q ss_pred             CCccEEEEccCChhHHHHHHHHccc--CCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC---------CCCCcH
Q 024295          155 MGVDYCFECTGVPSLLSEALETTKV--GKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI---------KTKSDL  223 (269)
Q Consensus       155 ~~~d~v~d~~g~~~~~~~~~~~l~~--~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~  223 (269)
                       ++|+++|++|.+..+..+++++++  + |+++.+|...... .+.      .+..........+         .....+
T Consensus       221 -~~d~vl~~~g~~~~~~~~~~~l~~~~~-g~~v~~g~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (339)
T cd08249         221 -KLRYALDCISTPESAQLCAEALGRSGG-GKLVSLLPVPEET-EPR------KGVKVKFVLGYTVFGEIPEDREFGEVFW  291 (339)
T ss_pred             -CeeEEEEeeccchHHHHHHHHHhccCC-CEEEEecCCCccc-cCC------CCceEEEEEeeeecccccccccchHHHH
Confidence             899999999985588999999999  8 9999998665321 111      2222222111110         112346


Q ss_pred             HHHHHHHHCCCCCCCcceeEEee--hhhHHHHHHHhcCCC-e-eeEEeeC
Q 024295          224 PTLLDKCKNKEFKLHQLLTHHVK--LEEIDKAIQLLKQPD-C-VKVLITI  269 (269)
Q Consensus       224 ~~~~~l~~~g~~~~~~~~~~~~~--~~~~~~a~~~~~~~~-~-~k~vl~~  269 (269)
                      ..+++++.++++.+.  ...+++  +++++++|+.+..++ . .|+|+++
T Consensus       292 ~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~~  339 (339)
T cd08249         292 KYLPELLEEGKLKPH--PVRVVEGGLEGVQEGLDLLRKGKVSGEKLVVRL  339 (339)
T ss_pred             HHHHHHHHcCCccCC--CceecCCcHHHHHHHHHHHHCCCccceEEEEeC
Confidence            778899999987764  334577  999999999998877 5 5999874

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.95  E-value=1.1e-25  Score=191.29  Aligned_cols=242  Identities=22%  Similarity=0.242  Sum_probs=193.8

Q ss_pred             cccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-
Q 024295           15 LMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-   93 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-   93 (269)
                      .+|+++..+++ ||+|++.. .|+|++|+.++.+.++++|++  +.+++.+++++.+||+++....+++++++++|+|+ 
T Consensus        74 ~vG~~v~~~~~-Gd~V~~~~-~g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~  149 (329)
T cd08250          74 AVGEGVTDFKV-GDAVATMS-FGAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAA  149 (329)
T ss_pred             EECCCCCCCCC-CCEEEEec-CcceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCc
Confidence            35777777888 99999765 488999999999999999997  35677788899999999888889999999999985 


Q ss_pred             ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHH
Q 024295           94 GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA  173 (269)
Q Consensus        94 g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  173 (269)
                      |.+|++++++++..|+ +|+++++++++.+.++++|++.+++..+   .++.+.+....+ .++|++||++|+. .+..+
T Consensus       150 g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~~~~~~~~~~~~-~~vd~v~~~~g~~-~~~~~  223 (329)
T cd08250         150 GGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCDRPINYKT---EDLGEVLKKEYP-KGVDVVYESVGGE-MFDTC  223 (329)
T ss_pred             cHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCceEEeCCC---ccHHHHHHHhcC-CCCeEEEECCcHH-HHHHH
Confidence            9999999999999999 8999998999999999999988887765   667677766655 4899999999874 78999


Q ss_pred             HHHcccCCcEEEEEccCCCc----------cccchhHhhhhCCceEEeeeccCCC--CCCcHHHHHHHHHCCCCCCCcce
Q 024295          174 LETTKVGKGKVIVIGVGVDA----------MVPLNVIALACGGRTLKGTTFGGIK--TKSDLPTLLDKCKNKEFKLHQLL  241 (269)
Q Consensus       174 ~~~l~~~~G~~v~~g~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~~~  241 (269)
                      +++++++ |+++.+|.....          ...++. ..+.++.++.+.....+.  ..+.+.++++++.++.+++....
T Consensus       224 ~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  301 (329)
T cd08250         224 VDNLALK-GRLIVIGFISGYQSGTGPSPVKGATLPP-KLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDP  301 (329)
T ss_pred             HHHhccC-CeEEEEecccCCcccCcccccccccccH-HHhhcCceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECC
Confidence            9999996 999999865421          012222 334588899887654321  12457788899999987664334


Q ss_pred             eEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295          242 THHVKLEEIDKAIQLLKQPDC-VKVLIT  268 (269)
Q Consensus       242 ~~~~~~~~~~~a~~~~~~~~~-~k~vl~  268 (269)
                      .+.++++++++|++.+..+.. +|++++
T Consensus       302 ~~~~~~~~~~~a~~~~~~~~~~~kvvv~  329 (329)
T cd08250         302 TRFRGLESVADAVDYLYSGKNIGKVVVE  329 (329)
T ss_pred             ccccCHHHHHHHHHHHHcCCCCceEEeC
Confidence            556999999999999887665 588864

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.95  E-value=2.1e-25  Score=188.22  Aligned_cols=243  Identities=22%  Similarity=0.298  Sum_probs=200.1

Q ss_pred             ccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-C
Q 024295           16 MLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-G   94 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g   94 (269)
                      +|.++..+++ ||+|+++..+|+|++|+.++++.++++|+++++.+++.++.++.+|++++.+...+.++++++|+|+ |
T Consensus        72 vg~~~~~~~~-Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~  150 (323)
T cd05276          72 VGPGVTGWKV-GDRVCALLAGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGAS  150 (323)
T ss_pred             eCCCCCCCCC-CCEEEEecCCCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcC
Confidence            5667777888 9999988767899999999999999999999999999999999999999888888999999999996 8


Q ss_pred             hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHH
Q 024295           95 TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL  174 (269)
Q Consensus        95 ~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~  174 (269)
                      ++|++++++++..|+ +++++++++++.+.++++|++.+++...   .++.+.+.....+.++|+++|++|+. .....+
T Consensus       151 ~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~  225 (323)
T cd05276         151 GVGTAAIQLAKALGA-RVIATAGSEEKLEACRALGADVAINYRT---EDFAEEVKEATGGRGVDVILDMVGGD-YLARNL  225 (323)
T ss_pred             hHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCc---hhHHHHHHHHhCCCCeEEEEECCchH-HHHHHH
Confidence            999999999999999 8999999889999998899888888775   67777777776666899999999976 578899


Q ss_pred             HHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCC-------CcHHHHHHHHHCCCCCCCcceeEEeeh
Q 024295          175 ETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTK-------SDLPTLLDKCKNKEFKLHQLLTHHVKL  247 (269)
Q Consensus       175 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~g~~~~~~~~~~~~~~  247 (269)
                      ++++++ |+++.+|........++...++.++.++.++........       +.+.++++++.++++++  ..++.|++
T Consensus       226 ~~~~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  302 (323)
T cd05276         226 RALAPD-GRLVLIGLLGGAKAELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAAFREHVWPLFASGRIRP--VIDKVFPL  302 (323)
T ss_pred             HhhccC-CEEEEEecCCCCCCCCchHHHHHhCCeEEEeeccchhhhccHHHHHHHHHHHHHHHHCCCccC--CcceEEcH
Confidence            999996 999999865432334555555568999998875542110       23566788888888653  36778999


Q ss_pred             hhHHHHHHHhcCCCe-eeEEe
Q 024295          248 EEIDKAIQLLKQPDC-VKVLI  267 (269)
Q Consensus       248 ~~~~~a~~~~~~~~~-~k~vl  267 (269)
                      ++++++++.+.++.. +|+++
T Consensus       303 ~~~~~a~~~~~~~~~~~kvv~  323 (323)
T cd05276         303 EEAAEAHRRMESNEHIGKIVL  323 (323)
T ss_pred             HHHHHHHHHHHhCCCcceEeC
Confidence            999999999887655 47663

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.94  E-value=3e-25  Score=188.05  Aligned_cols=238  Identities=18%  Similarity=0.216  Sum_probs=185.8

Q ss_pred             CceeeeecCeEEeeee------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHh--cCCCCCC-eEE
Q 024295           19 STSRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKE--AKVEKGS-SVA   89 (269)
Q Consensus        19 ~~~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~--~~~~~~~-~vl   89 (269)
                      ++..+++ ||+|++..      .+|++++|+.++.+.++++|+++++++++.+++.+.+|++++...  +.+.+++ +|+
T Consensus        72 ~~~~~~~-Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vl  150 (323)
T TIGR02823        72 EDPRFRE-GDEVIVTGYGLGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVL  150 (323)
T ss_pred             CCCCCCC-CCEEEEccCCCCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEE
Confidence            4556788 99998764      358999999999999999999999999999999999998876433  3488898 999


Q ss_pred             EEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChh
Q 024295           90 VLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS  168 (269)
Q Consensus        90 I~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~  168 (269)
                      |+|+ |++|.+++++|+.+|+ +++++++++++.+.++++|++.+++..+   .+.  .++...++ ++|+++|++|+. 
T Consensus       151 I~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~---~~~--~~~~~~~~-~~d~vld~~g~~-  222 (323)
T TIGR02823       151 VTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGASEVIDRED---LSP--PGKPLEKE-RWAGAVDTVGGH-  222 (323)
T ss_pred             EEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcEEEcccc---HHH--HHHHhcCC-CceEEEECccHH-
Confidence            9996 9999999999999999 7888888888889999999988887654   332  44455555 699999999976 


Q ss_pred             HHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC---CCcHHHHHHHHHCCCCCCCcceeEEe
Q 024295          169 LLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT---KSDLPTLLDKCKNKEFKLHQLLTHHV  245 (269)
Q Consensus       169 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~  245 (269)
                      .+...+++++++ |+++.+|.......+++...++.++.++.+........   .+.+..+.+++..+.+..  . .+.+
T Consensus       223 ~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~  298 (323)
T TIGR02823       223 TLANVLAQLKYG-GAVAACGLAGGPDLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLATDLKPRNLES--I-TREI  298 (323)
T ss_pred             HHHHHHHHhCCC-CEEEEEcccCCCCccccHHHHhhcceEEEEEeccccCchhHHHHHHHHHHHhhcCCCcC--c-eeee
Confidence            678999999996 99999997643333444455656899998875432211   112455666676777543  2 4589


Q ss_pred             ehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          246 KLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       246 ~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++++++|+.+.+++. +|+|++.
T Consensus       299 ~l~~~~~a~~~~~~~~~~~k~vv~~  323 (323)
T TIGR02823       299 TLEELPEALEQILAGQHRGRTVVDV  323 (323)
T ss_pred             cHHHHHHHHHHHhCCCccceEEEeC
Confidence            99999999999988776 5888763

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.94  E-value=2e-25  Score=185.13  Aligned_cols=234  Identities=25%  Similarity=0.368  Sum_probs=184.3

Q ss_pred             cccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG   92 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G   92 (269)
                      +-.+|+++.++++ ||+|+++   +.|++|+.++.+.++++|+++++++++.+ +++++||+++. ..++++++++||+|
T Consensus        32 V~~vG~~v~~~~~-Gd~V~~~---~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~~-~~~~~~g~~vlI~g  105 (277)
T cd08255          32 VVEVGSGVTGFKP-GDRVFCF---GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGVR-DAEPRLGERVAVVG  105 (277)
T ss_pred             EEEeCCCCCCCCC-CCEEEec---CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHHH-hcCCCCCCEEEEEC
Confidence            3345778888888 9999876   36999999999999999999999999988 78999999874 78999999999999


Q ss_pred             CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC-CceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHH
Q 024295           93 LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG-MTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS  171 (269)
Q Consensus        93 ~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~  171 (269)
                      +|++|++++++|+.+|+++|+++++++++.+.++++| ++.+++..+           ...++.++|++||+++......
T Consensus       106 ~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~d~vl~~~~~~~~~~  174 (277)
T cd08255         106 LGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTA-----------DEIGGRGADVVIEASGSPSALE  174 (277)
T ss_pred             CCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccch-----------hhhcCCCCCEEEEccCChHHHH
Confidence            8999999999999999944999999999999999999 555554431           1123448999999998776889


Q ss_pred             HHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCC---------CCCcHHHHHHHHHCCCCCCCccee
Q 024295          172 EALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIK---------TKSDLPTLLDKCKNKEFKLHQLLT  242 (269)
Q Consensus       172 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~g~~~~~~~~~  242 (269)
                      ..+++++++ |+++.+|..... .......+..++.++.+.......         ..+.++++++++.+++++.  .+.
T Consensus       175 ~~~~~l~~~-g~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~--~~~  250 (277)
T cd08255         175 TALRLLRDR-GRVVLVGWYGLK-PLLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLEA--LIT  250 (277)
T ss_pred             HHHHHhcCC-cEEEEEeccCCC-ccccHHHHHhccCeEEeecccccccccccccccccccHHHHHHHHHcCCccc--ccc
Confidence            999999996 999999876532 111223344466677766543210         1256889999999998553  367


Q ss_pred             EEeehhhHHHHHHHhcCC--CeeeEEe
Q 024295          243 HHVKLEEIDKAIQLLKQP--DCVKVLI  267 (269)
Q Consensus       243 ~~~~~~~~~~a~~~~~~~--~~~k~vl  267 (269)
                      +++++++++++|+.+.++  ..+|+++
T Consensus       251 ~~~~~~~~~~a~~~~~~~~~~~~k~~~  277 (277)
T cd08255         251 HRVPFEDAPEAYRLLFEDPPECLKVVL  277 (277)
T ss_pred             CccCHHHHHHHHHHHHcCCccceeeeC
Confidence            789999999999999877  3368764

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.94  E-value=2.5e-25  Score=189.39  Aligned_cols=235  Identities=28%  Similarity=0.389  Sum_probs=190.4

Q ss_pred             ccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCcccccccccc
Q 024295           16 MLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCG   68 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~   68 (269)
                      +|.++..+.+ ||+|++..                           .+|+|++|+.++.+.++++|+++++.+++.+++.
T Consensus        69 ~g~~~~~~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~  147 (334)
T PRK13771         69 VGENVKGFKP-GDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCV  147 (334)
T ss_pred             eCCCCccCCC-CCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEECCCCCCHHHhhcccch
Confidence            4667677888 99998753                           1589999999999999999999999999999999


Q ss_pred             hhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295           69 FTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL  147 (269)
Q Consensus        69 ~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  147 (269)
                      +.+|++++... .++++++|+|+|+ |++|++++++++..|+ +++++++++++.+.++++ ++++++..     ++.+.
T Consensus       148 ~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~  219 (334)
T PRK13771        148 TGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKY-ADYVIVGS-----KFSEE  219 (334)
T ss_pred             HHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH-HHHhcCch-----hHHHH
Confidence            99999998665 8999999999997 9999999999999999 899999899999998888 77666543     34555


Q ss_pred             HHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeeccCCCCCCcHHHH
Q 024295          148 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTL  226 (269)
Q Consensus       148 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (269)
                      ++++  + ++|+++|++|+. ....++++++++ |+++.+|.... ...+......+.++.++.+...   ..+++++.+
T Consensus       220 v~~~--~-~~d~~ld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  291 (334)
T PRK13771        220 VKKI--G-GADIVIETVGTP-TLEESLRSLNMG-GKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHIS---ATKRDVEEA  291 (334)
T ss_pred             HHhc--C-CCcEEEEcCChH-HHHHHHHHHhcC-CEEEEEeccCCCCCcccCHHHHHhcccEEEEecC---CCHHHHHHH
Confidence            6654  3 799999999986 678999999996 99999997643 1212333334558888887642   234678999


Q ss_pred             HHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          227 LDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       227 ~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++.++.++  +.+++++++++++++|+.+.++.. +|+++.+
T Consensus       292 ~~~~~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  333 (334)
T PRK13771        292 LKLVAEGKIK--PVIGAEVSLSEIDKALEELKDKSRIGKILVKP  333 (334)
T ss_pred             HHHHHcCCCc--ceEeeeEcHHHHHHHHHHHHcCCCcceEEEec
Confidence            9999999865  347788999999999999887655 5888763

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=9.7e-25  Score=185.90  Aligned_cols=242  Identities=21%  Similarity=0.305  Sum_probs=199.8

Q ss_pred             ccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCcccccccccc
Q 024295           16 MLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCG   68 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~   68 (269)
                      +|.++..+++ ||+|+...                           ..|++++|++++.+.++++|+++++++++.+++.
T Consensus        72 ~G~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~  150 (342)
T cd08266          72 VGPGVTNVKP-GQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLT  150 (342)
T ss_pred             eCCCCCCCCC-CCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeCCCCCCHHHHHhhhhH
Confidence            5677777888 99998652                           2578999999999999999999999999999999


Q ss_pred             hhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295           69 FTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL  147 (269)
Q Consensus        69 ~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  147 (269)
                      +.+|++++....++.++++++|+|+ +.+|++++++++..|+ +++.+++++++.+.+++++.+.+++..+   .++.+.
T Consensus       151 ~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  226 (342)
T cd08266         151 FLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYVIDYRK---EDFVRE  226 (342)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCeEEecCC---hHHHHH
Confidence            9999999888889999999999987 7999999999999999 8999999988998888888877777665   667777


Q ss_pred             HHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHH
Q 024295          148 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLL  227 (269)
Q Consensus       148 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (269)
                      +.+.+.+.++|++++++|.. .+...+++++++ |+++.++........++....+.++.++.+.....   ...+.+++
T Consensus       227 ~~~~~~~~~~d~~i~~~g~~-~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  301 (342)
T cd08266         227 VRELTGKRGVDVVVEHVGAA-TWEKSLKSLARG-GRLVTCGATTGYEAPIDLRHVFWRQLSILGSTMGT---KAELDEAL  301 (342)
T ss_pred             HHHHhCCCCCcEEEECCcHH-HHHHHHHHhhcC-CEEEEEecCCCCCCCcCHHHHhhcceEEEEEecCC---HHHHHHHH
Confidence            77776656899999999875 678999999996 99999986654333444444456888888876432   35688899


Q ss_pred             HHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          228 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       228 ~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++++.+++  .+++.|++++++++++.+.++.. .|+++++
T Consensus       302 ~~l~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  342 (342)
T cd08266         302 RLVFRGKLKP--VIDSVFPLEEAAEAHRRLESREQFGKIVLTP  342 (342)
T ss_pred             HHHHcCCccc--ceeeeEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence            9999998553  47788999999999998877655 5988864

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.94  E-value=1.1e-24  Score=185.19  Aligned_cols=229  Identities=23%  Similarity=0.317  Sum_probs=185.6

Q ss_pred             cccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295           15 LMLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLS   66 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~   66 (269)
                      .+|+++.++++ ||+|+...                            .+|+|++|+.++.+.++++|+++++.+++.++
T Consensus        72 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~  150 (329)
T cd08298          72 AVGPGVTRFSV-GDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLL  150 (329)
T ss_pred             EECCCCCCCcC-CCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEECCCCCCHHHhhHhh
Confidence            35777777888 99996521                            25899999999999999999999999999999


Q ss_pred             cchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHH
Q 024295           67 CGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISE  146 (269)
Q Consensus        67 ~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  146 (269)
                      +++.+||+++ ..+++++++++||+|+|++|++++++++..|+ +|+++++++++.+.++++|++++++..+   .    
T Consensus       151 ~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~----  221 (329)
T cd08298         151 CAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADWAGDSDD---L----  221 (329)
T ss_pred             hhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcEEeccCc---c----
Confidence            9999999998 88999999999999999999999999999999 9999999999999999999988887653   1    


Q ss_pred             HHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHH
Q 024295          147 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTL  226 (269)
Q Consensus       147 ~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (269)
                            .+.++|+++++.+....+..++++++++ |+++.+|........++... +.++..+.++...   ..+.+.++
T Consensus       222 ------~~~~vD~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~---~~~~~~~~  290 (329)
T cd08298         222 ------PPEPLDAAIIFAPVGALVPAALRAVKKG-GRVVLAGIHMSDIPAFDYEL-LWGEKTIRSVANL---TRQDGEEF  290 (329)
T ss_pred             ------CCCcccEEEEcCCcHHHHHHHHHHhhcC-CEEEEEcCCCCCCCccchhh-hhCceEEEEecCC---CHHHHHHH
Confidence                  1237999999877666889999999996 99999885432122233333 3367777665432   23568889


Q ss_pred             HHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEe
Q 024295          227 LDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI  267 (269)
Q Consensus       227 ~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl  267 (269)
                      +++++++.+++   ..++|+++++++|++.+++++. +|+|+
T Consensus       291 ~~l~~~~~l~~---~~~~~~~~~~~~a~~~~~~~~~~~~~v~  329 (329)
T cd08298         291 LKLAAEIPIKP---EVETYPLEEANEALQDLKEGRIRGAAVL  329 (329)
T ss_pred             HHHHHcCCCCc---eEEEEeHHHHHHHHHHHHcCCCcceeeC
Confidence            99999998764   2578999999999999988766 57764

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08251 polyketide_synthase polyketide synthase

Probab=99.94  E-value=7.9e-25  Score=183.40  Aligned_cols=242  Identities=20%  Similarity=0.267  Sum_probs=193.6

Q ss_pred             cccCCceeeeecCeEEeeee--ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295           15 LMLDSTSRMSVRGQKLYHIF--SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG   92 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~--~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G   92 (269)
                      .+|+++.++++ ||+|+++.  ..|+|++|++++++.++++|+++++++++.+++.+++||+++ +...++++++++|+|
T Consensus        51 ~~G~~v~~~~~-Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-~~~~~~~g~~vli~~  128 (303)
T cd08251          51 AVGPHVTRLAV-GDEVIAGTGESMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-ARAGLAKGEHILIQT  128 (303)
T ss_pred             EECCCCCCCCC-CCEEEEecCCCCcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-HhcCCCCCCEEEEec
Confidence            46788888888 99998764  348999999999999999999999999999999999999987 578999999999996


Q ss_pred             -CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHH
Q 024295           93 -LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS  171 (269)
Q Consensus        93 -~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~  171 (269)
                       .|++|++++|+++.+|+ +|+++++++++.+.++++|++.+++...   .++.+.+..++++.++|+++|++++. ...
T Consensus       129 ~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~i~~~~~~~~~d~v~~~~~~~-~~~  203 (303)
T cd08251         129 ATGGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVPHVINYVE---EDFEEEIMRLTGGRGVDVVINTLSGE-AIQ  203 (303)
T ss_pred             CCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCC---ccHHHHHHHHcCCCCceEEEECCcHH-HHH
Confidence             59999999999999999 8999998889999999999999998876   77888888888777999999999764 778


Q ss_pred             HHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeeccCCC------CCCcHHHHHHHHHCCCCCCCcceeEE
Q 024295          172 EALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGIK------TKSDLPTLLDKCKNKEFKLHQLLTHH  244 (269)
Q Consensus       172 ~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~g~~~~~~~~~~~  244 (269)
                      ..+++++++ |+++.+|.... ....++...+. ++.++....+....      ..+.+.++++++.++.++.  ...+.
T Consensus       204 ~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~  279 (303)
T cd08251         204 KGLNCLAPG-GRYVEIAMTALKSAPSVDLSVLS-NNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGELRP--TVSRI  279 (303)
T ss_pred             HHHHHhccC-cEEEEEeccCCCccCccChhHhh-cCceEEEEehHHhhhhCHHHHHHHHHHHHHHHHCCCccC--CCceE
Confidence            999999996 99999986542 22233333333 44544433321110      0134667888898998653  36678


Q ss_pred             eehhhHHHHHHHhcCCCe-eeEEe
Q 024295          245 VKLEEIDKAIQLLKQPDC-VKVLI  267 (269)
Q Consensus       245 ~~~~~~~~a~~~~~~~~~-~k~vl  267 (269)
                      +++++++++++.+.++.. +|+++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~iv~  303 (303)
T cd08251         280 FPFDDIGEAYRYLSDRENIGKVVV  303 (303)
T ss_pred             EcHHHHHHHHHHHHhCCCcceEeC
Confidence            999999999999887665 47763

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>smart00829 PKS_ER Enoylreductase

Probab=99.94  E-value=4.6e-25  Score=183.24  Aligned_cols=242  Identities=19%  Similarity=0.296  Sum_probs=194.9

Q ss_pred             cccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-
Q 024295           15 LMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-   93 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-   93 (269)
                      .+|+++.++++ ||+|++... |+|++|+.++.+.++++|+++++++++.+++.+.+|++++.....+.++++|+|+|+ 
T Consensus        37 ~~G~~~~~~~~-Gd~V~~~~~-g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~  114 (288)
T smart00829       37 RVGPGVTGLAV-GDRVMGLAP-GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAA  114 (288)
T ss_pred             eeCCCCcCCCC-CCEEEEEcC-CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCC
Confidence            35777778888 999998753 899999999999999999999999999999999999999878889999999999984 


Q ss_pred             ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC--ceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHH
Q 024295           94 GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM--TDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS  171 (269)
Q Consensus        94 g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~  171 (269)
                      |.+|++++++++..|+ +|+++++++++.+.++++|+  +.++++.+   .++.+.+.+..++.++|+++|++++. ...
T Consensus       115 ~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~  189 (288)
T smart00829      115 GGVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRELGIPDDHIFSSRD---LSFADEILRATGGRGVDVVLNSLAGE-FLD  189 (288)
T ss_pred             cHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCChhheeeCCC---ccHHHHHHHHhCCCCcEEEEeCCCHH-HHH
Confidence            9999999999999999 89999999999999999998  77887766   67878888877766899999999864 778


Q ss_pred             HHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeeccCCC-----CCCcHHHHHHHHHCCCCCCCcceeEEe
Q 024295          172 EALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGIK-----TKSDLPTLLDKCKNKEFKLHQLLTHHV  245 (269)
Q Consensus       172 ~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~g~~~~~~~~~~~~  245 (269)
                      ..+++++++ |+++.+|.... ....++...+ .++.++.+.......     ..+.+..+++++.++++++.  ..+.|
T Consensus       190 ~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  265 (288)
T smart00829      190 ASLRCLAPG-GRFVEIGKRDIRDNSQLGMAPF-RRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPL--PVTVF  265 (288)
T ss_pred             HHHHhccCC-cEEEEEcCcCCccccccchhhh-cCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccCc--CceEE
Confidence            899999996 99999986542 1223333332 366776665432211     11346678888988986543  45679


Q ss_pred             ehhhHHHHHHHhcCCCe-eeEEe
Q 024295          246 KLEEIDKAIQLLKQPDC-VKVLI  267 (269)
Q Consensus       246 ~~~~~~~a~~~~~~~~~-~k~vl  267 (269)
                      ++++++++++.+..+.. +|+++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~ivv  288 (288)
T smart00829      266 PISDVEDAFRYMQQGKHIGKVVL  288 (288)
T ss_pred             cHHHHHHHHHHHhcCCCcceEeC
Confidence            99999999999887655 47653

Enoylreductase in Polyketide synthases.

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=5.3e-25  Score=185.19  Aligned_cols=208  Identities=21%  Similarity=0.349  Sum_probs=175.9

Q ss_pred             cccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295           15 LMLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLS   66 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~   66 (269)
                      .+|+++..+++ ||+|++..                            ..|+|++|++++...++++|+++++++++ +.
T Consensus        69 ~vG~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~  146 (306)
T cd08258          69 EVGPDVEGWKV-GDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAA-LT  146 (306)
T ss_pred             EECCCcCcCCC-CCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEECcCCCCHHHHH-hh
Confidence            35788888888 99998753                            24899999999999999999999999887 66


Q ss_pred             cchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc--CCcchHHHHHhCCCceeeCCCCCCCccH
Q 024295           67 CGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID--KNPWKKEKGKAFGMTDFINPDDEPNKSI  144 (269)
Q Consensus        67 ~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~--~~~~~~~~~~~~g~~~v~~~~~~~~~~~  144 (269)
                      .++++|++++...++++++++|||.|+|.+|.+++|+++..|+ +|+.+.  +++++.+.++++|++++ ++..   .++
T Consensus       147 ~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~~~-~~~~---~~~  221 (306)
T cd08258         147 EPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGADAV-NGGE---EDL  221 (306)
T ss_pred             chHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCccc-CCCc---CCH
Confidence            6889999999888999999999998889999999999999999 787763  34557788889999888 7776   788


Q ss_pred             HHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHH
Q 024295          145 SELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLP  224 (269)
Q Consensus       145 ~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (269)
                      .+.+.+..++.++|++||++|+...+...+++++++ |+++.+|........++...++++++++.|++++.   +++++
T Consensus       222 ~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~  297 (306)
T cd08258         222 AELVNEITDGDGADVVIECSGAVPALEQALELLRKG-GRIVQVGIFGPLAASIDVERIIQKELSVIGSRSST---PASWE  297 (306)
T ss_pred             HHHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccCCCCcccCHHHHhhcCcEEEEEecCc---hHhHH
Confidence            888888777678999999998766888999999996 99999998653345667777778999999998754   47799


Q ss_pred             HHHHHHHCC
Q 024295          225 TLLDKCKNK  233 (269)
Q Consensus       225 ~~~~l~~~g  233 (269)
                      ++++++++|
T Consensus       298 ~~~~~~~~~  306 (306)
T cd08258         298 TALRLLASG  306 (306)
T ss_pred             HHHHHHhcC
Confidence            999998875

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.94  E-value=8e-25  Score=185.05  Aligned_cols=245  Identities=21%  Similarity=0.306  Sum_probs=201.2

Q ss_pred             ccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-C
Q 024295           16 MLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-G   94 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g   94 (269)
                      +|+++.++++ ||+|++...+|++++|++++...++++|+++++.+++.+++++++|++++.+...++++++++|+|+ |
T Consensus        72 vg~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~  150 (325)
T TIGR02824        72 VGEGVSRWKV-GDRVCALVAGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGAS  150 (325)
T ss_pred             eCCCCCCCCC-CCEEEEccCCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcc
Confidence            5667777888 9999987666899999999999999999999999999999999999999888899999999999985 9


Q ss_pred             hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHH
Q 024295           95 TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL  174 (269)
Q Consensus        95 ~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~  174 (269)
                      ++|.+++++++..|+ +|+++.+++++.+.++++|.+.+++...   .++.+.++...++.++|+++++++.. .....+
T Consensus       151 ~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~  225 (325)
T TIGR02824       151 GIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGADIAINYRE---EDFVEVVKAETGGKGVDVILDIVGGS-YLNRNI  225 (325)
T ss_pred             hHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCc---hhHHHHHHHHcCCCCeEEEEECCchH-HHHHHH
Confidence            999999999999999 8999998898888888899888887765   66777888777666899999999875 778899


Q ss_pred             HHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC-CC------CCcHHHHHHHHHCCCCCCCcceeEEeeh
Q 024295          175 ETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI-KT------KSDLPTLLDKCKNKEFKLHQLLTHHVKL  247 (269)
Q Consensus       175 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~l~~~g~~~~~~~~~~~~~~  247 (269)
                      ++++++ |+++.+|........++...++.++.++.+...... ..      ...+.++++++.++.++.  .+++.+++
T Consensus       226 ~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~  302 (325)
T TIGR02824       226 KALALD-GRIVQIGFQGGRKAELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVRP--VIDKVFPL  302 (325)
T ss_pred             HhhccC-cEEEEEecCCCCcCCCChHHHHhcCCEEEEEehhhcchhhhHHHHHHHHHHHHHHHHCCcccC--ccccEEeH
Confidence            999996 999999865432225555556569999998875542 11      123456778888888643  36778999


Q ss_pred             hhHHHHHHHhcCCCe-eeEEeeC
Q 024295          248 EEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       248 ~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++++++.+.++.. +|++++.
T Consensus       303 ~~~~~~~~~~~~~~~~~~~v~~~  325 (325)
T TIGR02824       303 EDAAQAHALMESGDHIGKIVLTV  325 (325)
T ss_pred             HHHHHHHHHHHhCCCcceEEEeC
Confidence            999999999887665 5888753

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.94  E-value=1.2e-24  Score=185.44  Aligned_cols=242  Identities=19%  Similarity=0.205  Sum_probs=193.1

Q ss_pred             ccCCceeeeecCeEEeeee---ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCC-----CCe
Q 024295           16 MLDSTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEK-----GSS   87 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~-----~~~   87 (269)
                      +|+++..+++ ||+|+...   .+|+|++|+.++.+.++++|++++.++++.+++.+.+||+++...+.+++     +++
T Consensus        74 ~G~~v~~~~~-Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~  152 (336)
T cd08252          74 VGSEVTLFKV-GDEVYYAGDITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKT  152 (336)
T ss_pred             cCCCCCCCCC-CCEEEEcCCCCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCE
Confidence            5677777888 99998753   35899999999999999999999999999999999999999888888887     999


Q ss_pred             EEEEcC-ChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           88 VAVLGL-GTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        88 vlI~G~-g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      |+|+|+ |++|++++++++.+| + +|+++++++++.+.++++|++++++..    .++.+.++... +.++|++||+++
T Consensus       153 vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~i~~~~-~~~~d~vl~~~~  226 (336)
T cd08252         153 LLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKELGADHVINHH----QDLAEQLEALG-IEPVDYIFCLTD  226 (336)
T ss_pred             EEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHhcCCcEEEeCC----ccHHHHHHhhC-CCCCCEEEEccC
Confidence            999985 999999999999999 7 999999999999999999998888775    24556665443 348999999998


Q ss_pred             ChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC---CC------CCcHHHHHHHHHCCCCC
Q 024295          166 VPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI---KT------KSDLPTLLDKCKNKEFK  236 (269)
Q Consensus       166 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~l~~~g~~~  236 (269)
                      .+..+..++++++++ |+++.+|...   ..++...+..++.++.+..+...   ..      .+.+.++++++.++.+.
T Consensus       227 ~~~~~~~~~~~l~~~-g~~v~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  302 (336)
T cd08252         227 TDQHWDAMAELIAPQ-GHICLIVDPQ---EPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLK  302 (336)
T ss_pred             cHHHHHHHHHHhcCC-CEEEEecCCC---CcccchhhhcccceEEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEe
Confidence            766889999999996 9999998653   23444445457888887554321   00      13467889999999876


Q ss_pred             CCcc-eeEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295          237 LHQL-LTHHVKLEEIDKAIQLLKQPDC-VKVLIT  268 (269)
Q Consensus       237 ~~~~-~~~~~~~~~~~~a~~~~~~~~~-~k~vl~  268 (269)
                      +... ..+.+++++++++++.+.++.. .|++++
T Consensus       303 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~  336 (336)
T cd08252         303 TTLTETLGPINAENLREAHALLESGKTIGKIVLE  336 (336)
T ss_pred             cceeeeecCCCHHHHHHHHHHHHcCCccceEEeC
Confidence            4311 1234799999999999988776 488763

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=1.4e-24  Score=184.46  Aligned_cols=235  Identities=27%  Similarity=0.411  Sum_probs=190.0

Q ss_pred             ccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCcccccccccc
Q 024295           16 MLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCG   68 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~   68 (269)
                      +|+++..+.+ ||+|+++.                           ..|+|++|++++...++++|+++++++++.++++
T Consensus        69 ~G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~  147 (332)
T cd08259          69 VGEGVERFKP-GDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACV  147 (332)
T ss_pred             ECCCCccCCC-CCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECCCCCCHHHHhhhccH
Confidence            4777777888 99998764                           1589999999999999999999999999999999


Q ss_pred             hhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295           69 FTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL  147 (269)
Q Consensus        69 ~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  147 (269)
                      +.+||+++.. +.+++++++||+|+ |++|++++++++..|. +|+++++++++.+.+++++.+.+++..    . +.+.
T Consensus       148 ~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~  220 (332)
T cd08259         148 VGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGS----K-FSED  220 (332)
T ss_pred             HHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCcEEEecH----H-HHHH
Confidence            9999999876 88999999999986 9999999999999999 899999888888888888888777553    3 5556


Q ss_pred             HHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHH
Q 024295          148 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLL  227 (269)
Q Consensus       148 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (269)
                      +.+..   ++|++++++|.. ....++++++++ |+++.+|........++......++.++.++..   ...+.+.+++
T Consensus       221 ~~~~~---~~d~v~~~~g~~-~~~~~~~~~~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  292 (332)
T cd08259         221 VKKLG---GADVVIELVGSP-TIEESLRSLNKG-GRLVLIGNVTPDPAPLRPGLLILKEIRIIGSIS---ATKADVEEAL  292 (332)
T ss_pred             HHhcc---CCCEEEECCChH-HHHHHHHHhhcC-CEEEEEcCCCCCCcCCCHHHHHhCCcEEEEecC---CCHHHHHHHH
Confidence            65543   799999999876 578899999995 999999865532222233333347777776632   1235688899


Q ss_pred             HHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295          228 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT  268 (269)
Q Consensus       228 ~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~  268 (269)
                      +++.++.++  +.+++++++++++++|+.+.++.. +|++++
T Consensus       293 ~~~~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  332 (332)
T cd08259         293 KLVKEGKIK--PVIDRVVSLEDINEALEDLKSGKVVGRIVLK  332 (332)
T ss_pred             HHHHcCCCc--cceeEEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence            999999865  347789999999999999987765 588764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.94  E-value=6.4e-25  Score=186.50  Aligned_cols=233  Identities=24%  Similarity=0.265  Sum_probs=188.2

Q ss_pred             eeeecCeEEeeeeccCcccceEeecc-CceEEcCCCCC--cccccc-cccchhhhHHHHHHhcCCCCCCeEEEEcC-Chh
Q 024295           22 RMSVRGQKLYHIFSCSTWSEYMVIDA-NYVVKVDPSID--PSDASF-LSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTV   96 (269)
Q Consensus        22 ~~~~~Gd~v~~~~~~g~~a~~~~v~~-~~~~~vp~~~~--~~~aa~-~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g~~   96 (269)
                      .+++ ||+|+++   ++|++|+.++. +.++++|++++  +.+++. +++++.+||+++.....+.++++|||+|+ |++
T Consensus        83 ~~~~-Gd~V~~~---~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~i  158 (329)
T cd05288          83 DFKV-GDLVSGF---LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAV  158 (329)
T ss_pred             CCCC-CCEEecc---cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchH
Confidence            5788 9999875   47999999999 99999999985  445555 88899999999888888999999999985 999


Q ss_pred             HHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHH
Q 024295           97 GLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE  175 (269)
Q Consensus        97 G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~  175 (269)
                      |++++++++..|+ +|+++++++++.+.+++ +|+++++++++   .++.+.+.++++ .++|+++|++|+. .+..+++
T Consensus       159 g~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~v~~~~~-~~~d~vi~~~g~~-~~~~~~~  232 (329)
T cd05288         159 GSVVGQIAKLLGA-RVVGIAGSDEKCRWLVEELGFDAAINYKT---PDLAEALKEAAP-DGIDVYFDNVGGE-ILDAALT  232 (329)
T ss_pred             HHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhhcCCceEEecCC---hhHHHHHHHhcc-CCceEEEEcchHH-HHHHHHH
Confidence            9999999999999 89999989999999988 99999998876   678888887775 4899999999975 7899999


Q ss_pred             HcccCCcEEEEEccCCCccc-----cchhHhhhhCCceEEeeeccCCCC--CCcHHHHHHHHHCCCCCCCcceeEEeehh
Q 024295          176 TTKVGKGKVIVIGVGVDAMV-----PLNVIALACGGRTLKGTTFGGIKT--KSDLPTLLDKCKNKEFKLHQLLTHHVKLE  248 (269)
Q Consensus       176 ~l~~~~G~~v~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  248 (269)
                      +++++ |+++.+|.......     .++....+.++.++.+.....+..  .+.+.++++++.++.+++.+  ...++++
T Consensus       233 ~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~--~~~~~l~  309 (329)
T cd05288         233 LLNKG-GRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYRE--DVVEGLE  309 (329)
T ss_pred             hcCCC-ceEEEEeeccCcccccccccccHHHHhhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCccccc--cccccHH
Confidence            99996 99999986543111     123444556889988876443211  13477788999999977653  3458999


Q ss_pred             hHHHHHHHhcCCCe-eeEEe
Q 024295          249 EIDKAIQLLKQPDC-VKVLI  267 (269)
Q Consensus       249 ~~~~a~~~~~~~~~-~k~vl  267 (269)
                      +++++++.+.++.. +|+++
T Consensus       310 ~~~~a~~~~~~~~~~gkvvv  329 (329)
T cd05288         310 NAPEAFLGLFTGKNTGKLVV  329 (329)
T ss_pred             HHHHHHHHHhcCCCccceeC
Confidence            99999999887655 47663

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.94  E-value=1.5e-24  Score=183.22  Aligned_cols=244  Identities=21%  Similarity=0.289  Sum_probs=198.6

Q ss_pred             ccCCceeeeecCeEEeeee-----ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEE
Q 024295           16 MLDSTSRMSVRGQKLYHIF-----SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAV   90 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~-----~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI   90 (269)
                      +|+++.++++ ||+|++..     ..|++++|+.++++.++++|+++++++++.+++++.+|++++....++.++++++|
T Consensus        72 ~g~~~~~~~~-Gd~v~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI  150 (325)
T cd08253          72 VGEGVDGLKV-GDRVWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLV  150 (325)
T ss_pred             eCCCCCCCCC-CCEEEEeccccCCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEE
Confidence            5777778888 99998875     35899999999999999999999999999999999999999888889999999999


Q ss_pred             EcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhH
Q 024295           91 LGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  169 (269)
Q Consensus        91 ~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  169 (269)
                      +|+ |.+|++++++++..|+ +|+++++++++.+.++++|++++++...   .++.+.+.++.++.++|+++|+++.. .
T Consensus       151 ~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~-~  225 (325)
T cd08253         151 HGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVFNYRA---EDLADRILAATAGQGVDVIIEVLANV-N  225 (325)
T ss_pred             EcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC---cCHHHHHHHHcCCCceEEEEECCchH-H
Confidence            985 9999999999999999 8999999999999998899988888765   67778888777666899999999886 6


Q ss_pred             HHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC---CCcHHHHHHHHHCCCCCCCcceeEEee
Q 024295          170 LSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT---KSDLPTLLDKCKNKEFKLHQLLTHHVK  246 (269)
Q Consensus       170 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~  246 (269)
                      ....+++++++ |+++.+|... ...+++...++.++.++.+........   .+.+..+.+++..+.++.  ..+++++
T Consensus       226 ~~~~~~~l~~~-g~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~  301 (325)
T cd08253         226 LAKDLDVLAPG-GRIVVYGSGG-LRGTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGALRP--VIAREYP  301 (325)
T ss_pred             HHHHHHhhCCC-CEEEEEeecC-CcCCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCccC--ccccEEc
Confidence            68889999996 9999998654 233454555455778777765322111   123556667788887654  3667899


Q ss_pred             hhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          247 LEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       247 ~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +++++++++.+.++.. +|+++++
T Consensus       302 ~~~~~~~~~~~~~~~~~~kvv~~~  325 (325)
T cd08253         302 LEEAAAAHEAVESGGAIGKVVLDP  325 (325)
T ss_pred             HHHHHHHHHHHHcCCCcceEEEeC
Confidence            9999999999877655 5888763

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.94  E-value=1.9e-24  Score=183.66  Aligned_cols=234  Identities=24%  Similarity=0.383  Sum_probs=188.4

Q ss_pred             ccCCceeeeecCeEEee----------------------------eeccCcccceEeeccCceEEcCCCCCccccccccc
Q 024295           16 MLDSTSRMSVRGQKLYH----------------------------IFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSC   67 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~----------------------------~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~   67 (269)
                      +|.++.++++ ||+|+.                            +...|+|++|+.++.+.++++|+++++++++.+.+
T Consensus        68 ~g~~~~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~  146 (330)
T cd08245          68 VGAGVEGRKV-GDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLC  146 (330)
T ss_pred             ECCCCccccc-CCEEEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEECCCCCCHHHhhhhhh
Confidence            5667777888 999872                            22358999999999999999999999999999999


Q ss_pred             chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295           68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL  147 (269)
Q Consensus        68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  147 (269)
                      .+.+||+++.. .+++++++|||+|+|.+|++++++++..|. +|+++++++++.+.++++|++.+++...   .+....
T Consensus       147 ~~~ta~~~l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~  221 (330)
T cd08245         147 AGITVYSALRD-AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGA---ELDEQA  221 (330)
T ss_pred             hHHHHHHHHHh-hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcEEeccCC---cchHHh
Confidence            99999998754 789999999999988899999999999999 8999999999999998899988887654   333222


Q ss_pred             HHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHH
Q 024295          148 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLL  227 (269)
Q Consensus       148 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (269)
                          ..+ ++|+++|+++.......++++++++ |+++.++........+....++.++.++.++....   .+.+..++
T Consensus       222 ----~~~-~~d~vi~~~~~~~~~~~~~~~l~~~-G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  292 (330)
T cd08245         222 ----AAG-GADVILVTVVSGAAAEAALGGLRRG-GRIVLVGLPESPPFSPDIFPLIMKRQSIAGSTHGG---RADLQEAL  292 (330)
T ss_pred             ----ccC-CCCEEEECCCcHHHHHHHHHhcccC-CEEEEECCCCCCccccchHHHHhCCCEEEEeccCC---HHHHHHHH
Confidence                223 7999999988766889999999996 99999986543222333444666788887776432   35688899


Q ss_pred             HHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEe
Q 024295          228 DKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI  267 (269)
Q Consensus       228 ~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl  267 (269)
                      +++.++.+++   ..+++++++++++|+.+.++.. +|+|+
T Consensus       293 ~ll~~~~l~~---~~~~~~~~~~~~a~~~~~~~~~~~~~v~  330 (330)
T cd08245         293 DFAAEGKVKP---MIETFPLDQANEAYERMEKGDVRFRFVL  330 (330)
T ss_pred             HHHHcCCCcc---eEEEEcHHHHHHHHHHHHcCCCCcceeC
Confidence            9999998764   3468999999999999887765 47664

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.93  E-value=1.7e-24  Score=180.07  Aligned_cols=243  Identities=21%  Similarity=0.245  Sum_probs=195.5

Q ss_pred             ccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc-
Q 024295           14 GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG-   92 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G-   92 (269)
                      -.+|+++.++++ ||+|++.. .|+|+||+.++.+.++++|+++++.+++.+++++.+|+.++.+...++++++|+|+| 
T Consensus        40 ~~~g~~~~~~~~-Gd~V~~~~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~  117 (293)
T cd05195          40 TRVGSGVTGLKV-GDRVMGLA-PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAA  117 (293)
T ss_pred             EeecCCccCCCC-CCEEEEEe-cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecC
Confidence            335777778888 99999875 489999999999999999999999999999899999999988888999999999997 


Q ss_pred             CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC--CceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHH
Q 024295           93 LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG--MTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLL  170 (269)
Q Consensus        93 ~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g--~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~  170 (269)
                      .|++|++++++++..|+ +++++++++++.+.+++.+  ++.+++..+   .++.+.+++.+++.++|+++|+++++ .+
T Consensus       118 ~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~-~~  192 (293)
T cd05195         118 AGGVGQAAIQLAQHLGA-EVFATVGSEEKREFLRELGGPVDHIFSSRD---LSFADGILRATGGRGVDVVLNSLSGE-LL  192 (293)
T ss_pred             CCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhCCCcceEeecCc---hhHHHHHHHHhCCCCceEEEeCCCch-HH
Confidence            59999999999999999 8999998889999998887  677888765   67888888888777899999999987 88


Q ss_pred             HHHHHHcccCCcEEEEEccCCCc-cccchhHhhhhCCceEEeeeccCCC------CCCcHHHHHHHHHCCCCCCCcceeE
Q 024295          171 SEALETTKVGKGKVIVIGVGVDA-MVPLNVIALACGGRTLKGTTFGGIK------TKSDLPTLLDKCKNKEFKLHQLLTH  243 (269)
Q Consensus       171 ~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~g~~~~~~~~~~  243 (269)
                      ..++++++++ |+++.+|..... ...+....+. ++.++.........      ..+.+..+++++.+++++  +..++
T Consensus       193 ~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  268 (293)
T cd05195         193 RASWRCLAPF-GRFVEIGKRDILSNSKLGMRPFL-RNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLK--PLPPT  268 (293)
T ss_pred             HHHHHhcccC-ceEEEeeccccccCCccchhhhc-cCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcc--cCCCe
Confidence            9999999996 999999865431 1223333332 56666654432211      013467788899999865  44667


Q ss_pred             EeehhhHHHHHHHhcCCCe-eeEEe
Q 024295          244 HVKLEEIDKAIQLLKQPDC-VKVLI  267 (269)
Q Consensus       244 ~~~~~~~~~a~~~~~~~~~-~k~vl  267 (269)
                      .++++++.++++.+..+.. +|+++
T Consensus       269 ~~~~~~~~~a~~~~~~~~~~~~ivv  293 (293)
T cd05195         269 VVPSASEIDAFRLMQSGKHIGKVVL  293 (293)
T ss_pred             eechhhHHHHHHHHhcCCCCceecC
Confidence            8999999999999887665 47663

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.93  E-value=8.8e-25  Score=173.52  Aligned_cols=243  Identities=21%  Similarity=0.252  Sum_probs=192.0

Q ss_pred             cccCCceeeeecCeEEeeeeccCcccceEeeccCceEEc--CC--CCCccc-ccccccchhhhHHHHHHhcCCCCCCeEE
Q 024295           15 LMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKV--DP--SIDPSD-ASFLSCGFTTGYGAAWKEAKVEKGSSVA   89 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~v--p~--~~~~~~-aa~~~~~~~~a~~~l~~~~~~~~~~~vl   89 (269)
                      ++..+-+++.+ ||.|.++.   +|.||.+++++...+.  |.  +.++.- ..++.++.+|||..+.+....++|++|+
T Consensus        83 Vi~S~~~~~~~-GD~v~g~~---gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~  158 (343)
T KOG1196|consen   83 VIDSGHPNYKK-GDLVWGIV---GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVF  158 (343)
T ss_pred             EEecCCCCCCc-CceEEEec---cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEE
Confidence            34567788999 99999887   5999999988655444  33  233222 2336789999999999999999999999


Q ss_pred             EEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh
Q 024295           90 VLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP  167 (269)
Q Consensus        90 I~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~  167 (269)
                      |-|+ |++|+.+.|+|+.+|+ +|++++.++||.+.++. +|.+..+||++  +.+..+.++...+. ++|+.||.+|+.
T Consensus       159 VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G~d~afNYK~--e~~~~~aL~r~~P~-GIDiYfeNVGG~  234 (343)
T KOG1196|consen  159 VSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKE--ESDLSAALKRCFPE-GIDIYFENVGGK  234 (343)
T ss_pred             EeeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccCCccceeccC--ccCHHHHHHHhCCC-cceEEEeccCcH
Confidence            9986 9999999999999999 99999999999999876 79999999997  34888888888777 999999999997


Q ss_pred             hHHHHHHHHcccCCcEEEEEccCCC--ccccch---hHhhhhCCceEEeeeccCCCC--CCcHHHHHHHHHCCCCCCCcc
Q 024295          168 SLLSEALETTKVGKGKVIVIGVGVD--AMVPLN---VIALACGGRTLKGTTFGGIKT--KSDLPTLLDKCKNKEFKLHQL  240 (269)
Q Consensus       168 ~~~~~~~~~l~~~~G~~v~~g~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~~~~  240 (269)
                       .++..+..++.. |+++.+|.-+.  .+.+..   ....+.|++++.|+....+..  .+.+..+..++++|+|+...-
T Consensus       235 -~lDavl~nM~~~-gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~~~ikegKI~y~ed  312 (343)
T KOG1196|consen  235 -MLDAVLLNMNLH-GRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLLPYIKEGKITYVED  312 (343)
T ss_pred             -HHHHHHHhhhhc-cceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhhhhHHHHHHHHHHHhcCceEEehh
Confidence             779999999995 99999996653  122211   123456888998876555432  244677888999999887643


Q ss_pred             eeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          241 LTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       241 ~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +.  -.+++.++||.-|.+++. +|.++.+
T Consensus       313 i~--~Glen~P~A~vglf~GkNvGKqiv~v  340 (343)
T KOG1196|consen  313 IA--DGLENGPSALVGLFHGKNVGKQLVKV  340 (343)
T ss_pred             HH--HHHhccHHHHHHHhccCcccceEEEe
Confidence            33  469999999998888776 6888763

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.93  E-value=6.1e-24  Score=179.43  Aligned_cols=244  Identities=25%  Similarity=0.393  Sum_probs=199.4

Q ss_pred             ccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-C
Q 024295           16 MLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-G   94 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g   94 (269)
                      +|+++.++++ ||+|+++...|++++|+.++.+.++++|++++..+++.+..++.+|++++.....++++++++|+|+ |
T Consensus        72 ~g~~~~~~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~  150 (323)
T cd08241          72 VGEGVTGFKV-GDRVVALTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAG  150 (323)
T ss_pred             eCCCCCCCCC-CCEEEEecCCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCc
Confidence            4666677888 9999988645899999999999999999999999888888899999999877888999999999997 9


Q ss_pred             hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHH
Q 024295           95 TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL  174 (269)
Q Consensus        95 ~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~  174 (269)
                      ++|++++++++..|+ .|+.+++++++.+.++++|++.+++...   .++.+.+...+++.++|.++|++|+. ....++
T Consensus       151 ~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~i~~~~~~~~~d~v~~~~g~~-~~~~~~  225 (323)
T cd08241         151 GVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVIDYRD---PDLRERVKALTGGRGVDVVYDPVGGD-VFEASL  225 (323)
T ss_pred             hHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCceeeecCC---ccHHHHHHHHcCCCCcEEEEECccHH-HHHHHH
Confidence            999999999999999 8999998999999999999888887776   67888888887767899999999874 778899


Q ss_pred             HHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC------CCcHHHHHHHHHCCCCCCCcceeEEeehh
Q 024295          175 ETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT------KSDLPTLLDKCKNKEFKLHQLLTHHVKLE  248 (269)
Q Consensus       175 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  248 (269)
                      ++++++ |+++.+|........++....+.++.++.+.....+..      .+.+.++++++.++.+.  +..++.|+++
T Consensus       226 ~~~~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  302 (323)
T cd08241         226 RSLAWG-GRLLVIGFASGEIPQIPANLLLLKNISVVGVYWGAYARREPELLRANLAELFDLLAEGKIR--PHVSAVFPLE  302 (323)
T ss_pred             HhhccC-CEEEEEccCCCCcCcCCHHHHhhcCcEEEEEecccccchhHHHHHHHHHHHHHHHHCCCcc--cccceEEcHH
Confidence            999996 99999986543111133334455888988876554321      13467788999999864  3467789999


Q ss_pred             hHHHHHHHhcCCCe-eeEEee
Q 024295          249 EIDKAIQLLKQPDC-VKVLIT  268 (269)
Q Consensus       249 ~~~~a~~~~~~~~~-~k~vl~  268 (269)
                      ++.++++.+.++.. +|++++
T Consensus       303 ~~~~~~~~~~~~~~~~~vvv~  323 (323)
T cd08241         303 QAAEALRALADRKATGKVVLT  323 (323)
T ss_pred             HHHHHHHHHHhCCCCCcEEeC
Confidence            99999998876655 577763

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=5.8e-24  Score=179.94  Aligned_cols=239  Identities=23%  Similarity=0.283  Sum_probs=194.4

Q ss_pred             ccCCceeeeecCeEEeeee-----ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEE
Q 024295           16 MLDSTSRMSVRGQKLYHIF-----SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAV   90 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~-----~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI   90 (269)
                      +|+++..+++ ||+|++..     ..|+|++|+.++.+.++++|+++++.+++.+++.+.+|++++.+..+++++++++|
T Consensus        72 ~G~~~~~~~~-Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli  150 (326)
T cd08272          72 VGEGVTRFRV-GDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLI  150 (326)
T ss_pred             eCCCCCCCCC-CCEEEEccCCcCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            5677777888 99999775     25889999999999999999999999999999999999999888899999999999


Q ss_pred             EcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhH
Q 024295           91 LGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  169 (269)
Q Consensus        91 ~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  169 (269)
                      +|+ |++|++++++++..|+ +|++++++ ++.+.++++|.+.+++...   . +.+.+.+.+++.++|+++|++++. .
T Consensus       151 ~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~---~-~~~~~~~~~~~~~~d~v~~~~~~~-~  223 (326)
T cd08272         151 HGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGADPIIYYRE---T-VVEYVAEHTGGRGFDVVFDTVGGE-T  223 (326)
T ss_pred             EcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCCEEEecch---h-HHHHHHHhcCCCCCcEEEECCChH-H
Confidence            985 9999999999999999 89998887 8888898899988888765   5 778888887777899999999885 6


Q ss_pred             HHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccC--CC------CCCcHHHHHHHHHCCCCCCCcce
Q 024295          170 LSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGG--IK------TKSDLPTLLDKCKNKEFKLHQLL  241 (269)
Q Consensus       170 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~l~~~g~~~~~~~~  241 (269)
                      ....+++++++ |+++.++...  ..++.  ....++.++.+.....  ..      ..+.+..+++++.++.++.  .+
T Consensus       224 ~~~~~~~l~~~-g~~v~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~  296 (326)
T cd08272         224 LDASFEAVALY-GRVVSILGGA--THDLA--PLSFRNATYSGVFTLLPLLTGEGRAHHGEILREAARLVERGQLRP--LL  296 (326)
T ss_pred             HHHHHHHhccC-CEEEEEecCC--ccchh--hHhhhcceEEEEEcccccccccchhhHHHHHHHHHHHHHCCCccc--cc
Confidence            78899999996 9999998653  22222  2235788877765332  10      1234677888888888653  33


Q ss_pred             e-EEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          242 T-HHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       242 ~-~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      + +.+++++++++++.+.++.. .|+++++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~  326 (326)
T cd08272         297 DPRTFPLEEAAAAHARLESGSARGKIVIDV  326 (326)
T ss_pred             ccceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence            4 78999999999999877655 5888864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=1.1e-23  Score=178.32  Aligned_cols=245  Identities=24%  Similarity=0.348  Sum_probs=196.5

Q ss_pred             ccCCceeeeecCeEEeeee-----ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEE
Q 024295           16 MLDSTSRMSVRGQKLYHIF-----SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAV   90 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~-----~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI   90 (269)
                      +|+++..+++ ||+|+++.     ..|++++|+.++.+.++++|+++++++++.+++++.+|++++.....+.++++++|
T Consensus        72 ~G~~~~~~~~-Gd~V~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli  150 (328)
T cd08268          72 VGAGVTGFAV-GDRVSVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLI  150 (328)
T ss_pred             eCCCCCcCCC-CCEEEeccccccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEE
Confidence            4677777888 99998764     24889999999999999999999999999999999999999888889999999999


Q ss_pred             EcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhH
Q 024295           91 LGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  169 (269)
Q Consensus        91 ~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  169 (269)
                      +|+ |.+|++++++++..|+ +++.+++++++.+.++++|.+.+++...   ..+.+.+.+...+.++|++++++++. .
T Consensus       151 ~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~-~  225 (328)
T cd08268         151 TAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHVIVTDE---EDLVAEVLRITGGKGVDVVFDPVGGP-Q  225 (328)
T ss_pred             ecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEecCC---ccHHHHHHHHhCCCCceEEEECCchH-h
Confidence            986 9999999999999999 8999998999999998899888888775   67777777777666899999999885 7


Q ss_pred             HHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC-C----CcHHHHHHHHHCCCCCCCcceeEE
Q 024295          170 LSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT-K----SDLPTLLDKCKNKEFKLHQLLTHH  244 (269)
Q Consensus       170 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~l~~~g~~~~~~~~~~~  244 (269)
                      ...++++++++ |+++.+|........++....+.++.++.+........ .    +.+..+.+++.++.+..  ...+.
T Consensus       226 ~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  302 (328)
T cd08268         226 FAKLADALAPG-GTLVVYGALSGEPTPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIAFILDGLASGALKP--VVDRV  302 (328)
T ss_pred             HHHHHHhhccC-CEEEEEEeCCCCCCCCchHHHhhcCCEEEEEecccccCCHHHHHHHHHHHHHHHHCCCCcC--CcccE
Confidence            78899999996 99999986543223344443456888888876543211 1    12444555676777553  35678


Q ss_pred             eehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          245 VKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       245 ~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++++.++++.+..+.. +|++++.
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~vv~~~  328 (328)
T cd08268         303 FPFDDIVEAHRYLESGQQIGKIVVTP  328 (328)
T ss_pred             EcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            999999999999887665 5888763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.93  E-value=1.3e-23  Score=180.13  Aligned_cols=246  Identities=21%  Similarity=0.231  Sum_probs=181.1

Q ss_pred             cccCCce-eeeecCeEEeeee-----ccCcccceEeeccC----ceEEcCCCCCcccccccccchhhhHHHHHHhc-CCC
Q 024295           15 LMLDSTS-RMSVRGQKLYHIF-----SCSTWSEYMVIDAN----YVVKVDPSIDPSDASFLSCGFTTGYGAAWKEA-KVE   83 (269)
Q Consensus        15 ~vg~~~~-~~~~~Gd~v~~~~-----~~g~~a~~~~v~~~----~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~-~~~   83 (269)
                      .+|+++. ++.+ ||+|++..     ..|+|++|++++..    .++++|+++++++++.+++.+.+||+++.... +++
T Consensus        72 ~vG~~v~~~~~~-Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~  150 (352)
T cd08247          72 KVGSNVASEWKV-GDEVCGIYPHPYGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLG  150 (352)
T ss_pred             EeCcccccCCCC-CCEEEEeecCCCCCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccC
Confidence            3577887 7999 99998875     25899999999987    78999999999999999999999999987777 799


Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhCCCceeeCCCCCCCcc---HHHHHHhh-hCCCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKS---ISELVKGI-THGMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~---~~~~i~~~-~~~~~~  157 (269)
                      ++++|+|+|+ |.+|++++++|+..|. +.++++. ++++.+.++++|++++++..+   .+   +...+.+. +++.++
T Consensus       151 ~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~g~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~  226 (352)
T cd08247         151 PDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKLGADHFIDYDA---HSGVKLLKPVLENVKGQGKF  226 (352)
T ss_pred             CCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHhCCCEEEecCC---CcccchHHHHHHhhcCCCCc
Confidence            9999999987 7999999999998754 3677776 456666788899999998765   33   44444444 435589


Q ss_pred             cEEEEccCChhHHHHHHHHcc---cCCcEEEEEccCCCcccc-----------chhHhhhhCCceEEeeeccC--CC-CC
Q 024295          158 DYCFECTGVPSLLSEALETTK---VGKGKVIVIGVGVDAMVP-----------LNVIALACGGRTLKGTTFGG--IK-TK  220 (269)
Q Consensus       158 d~v~d~~g~~~~~~~~~~~l~---~~~G~~v~~g~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~--~~-~~  220 (269)
                      |++|||+|+......++++++   ++ |+++.++.....+..           .....+. ++.++....+..  .. ..
T Consensus       227 d~vl~~~g~~~~~~~~~~~l~~~~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  304 (352)
T cd08247         227 DLILDCVGGYDLFPHINSILKPKSKN-GHYVTIVGDYKANYKKDTFNSWDNPSANARKLF-GSLGLWSYNYQFFLLDPNA  304 (352)
T ss_pred             eEEEECCCCHHHHHHHHHHhCccCCC-CEEEEEeCCCcccccchhhhhccccchhhhhhh-hhhcCCCcceEEEEecCCH
Confidence            999999998657788999999   96 999987522111100           1111111 222221111100  00 12


Q ss_pred             CcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          221 SDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       221 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +.+..+++++.++.++  +.+.+++++++++++++.++++.. +|+++++
T Consensus       305 ~~~~~~~~~~~~~~l~--~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~~  352 (352)
T cd08247         305 DWIEKCAELIADGKVK--PPIDSVYPFEDYKEAFERLKSNRAKGKVVIKV  352 (352)
T ss_pred             HHHHHHHHHHhCCCeE--eeeccEecHHHHHHHHHHHHcCCCCCcEEEeC
Confidence            4577889999999865  336778999999999999987765 5988864

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.93  E-value=1.2e-23  Score=178.20  Aligned_cols=239  Identities=18%  Similarity=0.233  Sum_probs=185.2

Q ss_pred             CCceeeeecCeEEeeee------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHH--HhcCCC-CCCeE
Q 024295           18 DSTSRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAW--KEAKVE-KGSSV   88 (269)
Q Consensus        18 ~~~~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~--~~~~~~-~~~~v   88 (269)
                      .++..+.+ ||+|++..      ..|+|++|++++.+.++++|++++.++++.+++.+++|+.++.  .....+ ++++|
T Consensus        72 ~~~~~~~~-Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~v  150 (324)
T cd08288          72 SSSPRFKP-GDRVVLTGWGVGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPV  150 (324)
T ss_pred             CCCCCCCC-CCEEEECCccCCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEE
Confidence            45556777 99998752      2589999999999999999999999999999999999987754  224555 57899


Q ss_pred             EEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh
Q 024295           89 AVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP  167 (269)
Q Consensus        89 lI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~  167 (269)
                      ||+|+ |++|++++|+|+.+|+ +|++++.++++.+.++++|+++++++++   ..  ..++.+.++ ++|.++|+++++
T Consensus       151 lI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~---~~--~~~~~~~~~-~~~~~~d~~~~~  223 (324)
T cd08288         151 LVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGASEIIDRAE---LS--EPGRPLQKE-RWAGAVDTVGGH  223 (324)
T ss_pred             EEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCEEEEcch---hh--HhhhhhccC-cccEEEECCcHH
Confidence            99997 9999999999999999 8999988999999999999999988764   22  245555555 689999999874


Q ss_pred             hHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC---CCcHHHHHHHHHCCCCCCCcceeEE
Q 024295          168 SLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT---KSDLPTLLDKCKNKEFKLHQLLTHH  244 (269)
Q Consensus       168 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~  244 (269)
                       .....+..++.+ |+++.+|.....+.+++...++.++.++.+.+......   .+.+..+.+++.++.+.+   +.+.
T Consensus       224 -~~~~~~~~~~~~-g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~  298 (324)
T cd08288         224 -TLANVLAQTRYG-GAVAACGLAGGADLPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLARDLDPALLEA---LTRE  298 (324)
T ss_pred             -HHHHHHHHhcCC-CEEEEEEecCCCCCCcchhhhhccccEEEEEEeecccchhhHHHHHHHHHHHhcCCccc---ccee
Confidence             667888889996 99999987532223344455546899999875433221   124556777787887543   3578


Q ss_pred             eehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          245 VKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       245 ~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +++++++++++.+.++.. +|+++++
T Consensus       299 ~~~~~~~~a~~~~~~~~~~~~vvv~~  324 (324)
T cd08288         299 IPLADVPDAAEAILAGQVRGRVVVDV  324 (324)
T ss_pred             ecHHHHHHHHHHHhcCCccCeEEEeC
Confidence            999999999999988776 5888864

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.93  E-value=7.9e-24  Score=179.56  Aligned_cols=225  Identities=26%  Similarity=0.359  Sum_probs=181.7

Q ss_pred             cccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCccccccccc
Q 024295           15 LMLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSC   67 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~   67 (269)
                      .+|+++..+++ ||+|+...                           ..|+|++|++++++.++++|+++++++++.+++
T Consensus        68 ~vG~~v~~~~~-Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~  146 (325)
T cd08264          68 EVGDHVKGVKK-GDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPV  146 (325)
T ss_pred             EECCCCCCCCC-CCEEEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhh
Confidence            36778778888 99997541                           358999999999999999999999999999999


Q ss_pred             chhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHH
Q 024295           68 GFTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISE  146 (269)
Q Consensus        68 ~~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  146 (269)
                      .+.+|++++.. ++++++++|+|+|+ |++|++++++|+.+|+ +|+++++    .+.++++|++++++..+     ..+
T Consensus       147 ~~~~a~~~l~~-~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~~----~~~~~~~g~~~~~~~~~-----~~~  215 (325)
T cd08264         147 AALTAYHALKT-AGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVSR----KDWLKEFGADEVVDYDE-----VEE  215 (325)
T ss_pred             hhHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeH----HHHHHHhCCCeeecchH-----HHH
Confidence            99999999754 88999999999996 9999999999999999 7888763    36678899988887643     345


Q ss_pred             HHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHH
Q 024295          147 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTL  226 (269)
Q Consensus       147 ~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (269)
                      .+++++ + ++|+++|++|.+ .+...+++++++ |+++.+|.......+++...+..++.++.++..+.   ++.++++
T Consensus       216 ~l~~~~-~-~~d~vl~~~g~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  288 (325)
T cd08264         216 KVKEIT-K-MADVVINSLGSS-FWDLSLSVLGRG-GRLVTFGTLTGGEVKLDLSDLYSKQISIIGSTGGT---RKELLEL  288 (325)
T ss_pred             HHHHHh-C-CCCEEEECCCHH-HHHHHHHhhccC-CEEEEEecCCCCCCccCHHHHhhcCcEEEEccCCC---HHHHHHH
Confidence            566666 3 899999999975 889999999996 99999986532335566666666788887765332   3678889


Q ss_pred             HHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe
Q 024295          227 LDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC  262 (269)
Q Consensus       227 ~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  262 (269)
                      ++++...+  +  .+.++|++++++++++.+.++..
T Consensus       289 ~~l~~~~~--~--~~~~~~~~~~~~~a~~~~~~~~~  320 (325)
T cd08264         289 VKIAKDLK--V--KVWKTFKLEEAKEALKELFSKER  320 (325)
T ss_pred             HHHHHcCC--c--eeEEEEcHHHHHHHHHHHHcCCC
Confidence            99986443  2  35678999999999998877654

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=1.1e-23  Score=173.58  Aligned_cols=205  Identities=26%  Similarity=0.391  Sum_probs=169.1

Q ss_pred             cccCCceeeeecCeEEeeee-----------------------ccCcccceEeeccCceEEcCCCCCcccccccccchhh
Q 024295           15 LMLDSTSRMSVRGQKLYHIF-----------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTT   71 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~-----------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~   71 (269)
                      .+|+++..+++ ||+|++..                       ..|+|++|+.++.+.++++|+++++++++.+++++.+
T Consensus        43 ~~G~~v~~~~~-Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~  121 (271)
T cd05188          43 EVGPGVTGVKV-GDRVVVLPNLGCGTCELCRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLAT  121 (271)
T ss_pred             EECCCCCcCCC-CCEEEEcCCCCCCCCHHHHhhCCCCCEeccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHH
Confidence            34777788899 99998764                       2589999999999999999999999999999999999


Q ss_pred             hHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhh
Q 024295           72 GYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        72 a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      |++++.....++++++|||+|+|++|++++++++..|. +|+++++++++.+.++++|++++++..+   .++.+.+. .
T Consensus       122 a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~-~  196 (271)
T cd05188         122 AYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKE---EDLEEELR-L  196 (271)
T ss_pred             HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceeccCCc---CCHHHHHH-H
Confidence            99998887777999999999986699999999999998 9999999999999999999888888776   66666666 5


Q ss_pred             hCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHH
Q 024295          152 THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDK  229 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  229 (269)
                      ..+.++|+++++++.......++++++++ |+++.++..............+.+++++.++....   .+++++++++
T Consensus       197 ~~~~~~d~vi~~~~~~~~~~~~~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  270 (271)
T cd05188         197 TGGGGADVVIDAVGGPETLAQALRLLRPG-GRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGT---REDFEEALDL  270 (271)
T ss_pred             hcCCCCCEEEECCCCHHHHHHHHHhcccC-CEEEEEccCCCCCCcccHHHHHhcceEEEEeecCC---HHHHHHHHhh
Confidence            55558999999999845788999999996 99999987664222222344566999999987543   2456666655

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=2.7e-23  Score=176.61  Aligned_cols=240  Identities=23%  Similarity=0.316  Sum_probs=182.5

Q ss_pred             ccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC
Q 024295           14 GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL   93 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~   93 (269)
                      -.+|+++..+++ ||+|++....|+|++|+.++.+.++++|+++++++++.+++++.+||+++.....+.++++|+|+|+
T Consensus        70 ~~vG~~v~~~~~-Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~  148 (331)
T cd08273          70 DALGSGVTGFEV-GDRVAALTRVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGA  148 (331)
T ss_pred             EEeCCCCccCCC-CCEEEEeCCCcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence            335788888888 9999987656899999999999999999999999999999999999999888788999999999996


Q ss_pred             -ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHH
Q 024295           94 -GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSE  172 (269)
Q Consensus        94 -g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~  172 (269)
                       |++|++++++++..|+ +|++++. +++.+.++++|+.. ++...   .++.+.  ...++ ++|+++|++++. ....
T Consensus       149 ~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~-~~~~~---~~~~~~--~~~~~-~~d~vl~~~~~~-~~~~  218 (331)
T cd08273         149 SGGVGQALLELALLAGA-EVYGTAS-ERNHAALRELGATP-IDYRT---KDWLPA--MLTPG-GVDVVFDGVGGE-SYEE  218 (331)
T ss_pred             CcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCeE-EcCCC---cchhhh--hccCC-CceEEEECCchH-HHHH
Confidence             9999999999999999 8999887 88888888899754 44443   344333  23334 899999999987 4789


Q ss_pred             HHHHcccCCcEEEEEccCCC-cccc--chhH------------hhhhCCceEEeeeccCC----CCCCcHHHHHHHHHCC
Q 024295          173 ALETTKVGKGKVIVIGVGVD-AMVP--LNVI------------ALACGGRTLKGTTFGGI----KTKSDLPTLLDKCKNK  233 (269)
Q Consensus       173 ~~~~l~~~~G~~v~~g~~~~-~~~~--~~~~------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~g  233 (269)
                      ++++++++ |+++.+|.... ....  +++.            ....++.+.........    ...+.+.+++++++++
T Consensus       219 ~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  297 (331)
T cd08273         219 SYAALAPG-GTLVCYGGNSSLLQGRRSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKG  297 (331)
T ss_pred             HHHHhcCC-CEEEEEccCCCCCCccccccchhhhhhhhhhhcceeccceeEEEeechhcccCHHHHHHHHHHHHHHHHCC
Confidence            99999996 99999986653 1111  1110            11112233322221100    0124577899999999


Q ss_pred             CCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEe
Q 024295          234 EFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI  267 (269)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl  267 (269)
                      .++.  .+.+++++++++++++.+.++.. +|+|+
T Consensus       298 ~l~~--~~~~~~~~~~~~~a~~~~~~~~~~gkvv~  330 (331)
T cd08273         298 KIRP--KIAKRLPLSEVAEAHRLLESGKVVGKIVL  330 (331)
T ss_pred             CccC--CcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence            8653  46778999999999998877655 57765

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=2.2e-23  Score=176.44  Aligned_cols=240  Identities=24%  Similarity=0.326  Sum_probs=188.5

Q ss_pred             ccCCceeeeecCeEEeeee---ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295           16 MLDSTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG   92 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G   92 (269)
                      +|+++..+++ ||+|++..   ..|+|++|+.++++.++++|++++..+++.+.+++.+|++++...+.++++++++|+|
T Consensus        71 ~G~~~~~~~~-Gd~V~~~~~~~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g  149 (325)
T cd08271          71 VGAKVTGWKV-GDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITG  149 (325)
T ss_pred             eCCCCCcCCC-CCEEEeccCCCCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEC
Confidence            5777777888 99999774   3589999999999999999999999999999999999999988888999999999999


Q ss_pred             C-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHH
Q 024295           93 L-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS  171 (269)
Q Consensus        93 ~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~  171 (269)
                      + |++|++++++++..|+ +|+.+. ++++.+.++++|++.+++...   .++.+.+.+..++.++|+++++++++ ...
T Consensus       150 ~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~  223 (325)
T cd08271         150 GAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGADHVIDYND---EDVCERIKEITGGRGVDAVLDTVGGE-TAA  223 (325)
T ss_pred             CccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCcEEecCCC---ccHHHHHHHHcCCCCCcEEEECCCcH-hHH
Confidence            7 7899999999999999 788776 667888888899988888776   67778888877767899999999886 557


Q ss_pred             HHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC----------CCCCcHHHHHHHHHCCCCCCCcce
Q 024295          172 EALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI----------KTKSDLPTLLDKCKNKEFKLHQLL  241 (269)
Q Consensus       172 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~g~~~~~~~~  241 (269)
                      ..+++++++ |+++.++......   ....+ .++..+........          ..++.+.++++++.++.+++  ..
T Consensus       224 ~~~~~l~~~-G~~v~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~  296 (325)
T cd08271         224 ALAPTLAFN-GHLVCIQGRPDAS---PDPPF-TRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLELLAAGKLEP--LV  296 (325)
T ss_pred             HHHHhhccC-CEEEEEcCCCCCc---chhHH-hhcceEEEEEecccccccchhhHHHHHHHHHHHHHHHHCCCeee--cc
Confidence            789999995 9999987543211   11111 13333333222111          01123567888898998653  35


Q ss_pred             eEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          242 THHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       242 ~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      .+.++++++.++++.+.++.. .|+++++
T Consensus       297 ~~~~~~~~~~~a~~~~~~~~~~~kiv~~~  325 (325)
T cd08271         297 IEVLPFEQLPEALRALKDRHTRGKIVVTI  325 (325)
T ss_pred             ceEEcHHHHHHHHHHHHcCCccceEEEEC
Confidence            578999999999999887665 5888764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=8.9e-23  Score=173.64  Aligned_cols=243  Identities=21%  Similarity=0.283  Sum_probs=192.4

Q ss_pred             ccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-C
Q 024295           16 MLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-G   94 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g   94 (269)
                      +|+++.++.+ ||+|+++...|+|++|+.++.+.++++|+++++++++.+++++++||+++....+++++++|+|+|+ |
T Consensus        71 ~g~~~~~~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g  149 (337)
T cd08275          71 VGEGVKDFKV-GDRVMGLTRFGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAG  149 (337)
T ss_pred             ECCCCcCCCC-CCEEEEecCCCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcc
Confidence            5677778888 9999988666899999999999999999999999999999999999999888889999999999996 9


Q ss_pred             hhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHH
Q 024295           95 TVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEA  173 (269)
Q Consensus        95 ~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~  173 (269)
                      ++|++++++++.. +. .++... .+++.+.++++|++.+++...   .++.+.++..++ .++|+++|++|+. ....+
T Consensus       150 ~~g~~~~~~a~~~~~~-~~~~~~-~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~-~~~d~v~~~~g~~-~~~~~  222 (337)
T cd08275         150 GVGLAAGQLCKTVPNV-TVVGTA-SASKHEALKENGVTHVIDYRT---QDYVEEVKKISP-EGVDIVLDALGGE-DTRKS  222 (337)
T ss_pred             hHHHHHHHHHHHccCc-EEEEeC-CHHHHHHHHHcCCcEEeeCCC---CcHHHHHHHHhC-CCceEEEECCcHH-HHHHH
Confidence            9999999999998 33 333222 345788888899988888776   778888887775 4899999999976 67889


Q ss_pred             HHHcccCCcEEEEEccCCC-ccc---------------cchhHhhhhCCceEEeeeccCCCC-C----CcHHHHHHHHHC
Q 024295          174 LETTKVGKGKVIVIGVGVD-AMV---------------PLNVIALACGGRTLKGTTFGGIKT-K----SDLPTLLDKCKN  232 (269)
Q Consensus       174 ~~~l~~~~G~~v~~g~~~~-~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~l~~~  232 (269)
                      +++++++ |+++.+|.... ...               .+....++.++.++.++....... .    ..+.++++++.+
T Consensus       223 ~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (337)
T cd08275         223 YDLLKPM-GRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEE  301 (337)
T ss_pred             HHhhccC-cEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhChHHHHHHHHHHHHHHHC
Confidence            9999996 99999986542 111               112234456888888876542211 1    236678888889


Q ss_pred             CCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          233 KEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       233 g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +.+..  ...+.|++++++++++.+.++.. +|+++++
T Consensus       302 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~  337 (337)
T cd08275         302 GKIKP--KIDSVFPFEEVGEAMRRLQSRKNIGKVVLTP  337 (337)
T ss_pred             CCCCC--ceeeEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence            88654  36678999999999999887665 5988875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.91  E-value=1.9e-23  Score=178.92  Aligned_cols=239  Identities=20%  Similarity=0.216  Sum_probs=181.7

Q ss_pred             cccCCceeeeecCeEEeeee---ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCC----CCe
Q 024295           15 LMLDSTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEK----GSS   87 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~----~~~   87 (269)
                      .+|.++..+++ ||+|++..   ..|+|++|+.++++.++++|+++++++++.+++.+.+||+++...+.+.+    +++
T Consensus        87 ~vG~~v~~~~~-Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~  165 (350)
T cd08248          87 DIGSGVKSFEI-GDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKR  165 (350)
T ss_pred             ecCCCcccCCC-CCEEEEecCCCCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCE
Confidence            35777888899 99998764   35899999999999999999999999999999999999999877777754    999


Q ss_pred             EEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295           88 VAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  166 (269)
Q Consensus        88 vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  166 (269)
                      |+|+|+ |++|++++++++.+|+ +|+++.++ ++.+.++++|.+++++..+   .++.+.+..   ..++|+++|++|.
T Consensus       166 vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~---~~~~~~l~~---~~~vd~vi~~~g~  237 (350)
T cd08248         166 VLILGGSGGVGTFAIQLLKAWGA-HVTTTCST-DAIPLVKSLGADDVIDYNN---EDFEEELTE---RGKFDVILDTVGG  237 (350)
T ss_pred             EEEECCCChHHHHHHHHHHHCCC-eEEEEeCc-chHHHHHHhCCceEEECCC---hhHHHHHHh---cCCCCEEEECCCh
Confidence            999985 9999999999999999 78888754 6777888999988888765   556555543   2489999999998


Q ss_pred             hhHHHHHHHHcccCCcEEEEEccCCC-cc--ccc--hh----Hhhhh-------CCceEEeeeccCCCCCCcHHHHHHHH
Q 024295          167 PSLLSEALETTKVGKGKVIVIGVGVD-AM--VPL--NV----IALAC-------GGRTLKGTTFGGIKTKSDLPTLLDKC  230 (269)
Q Consensus       167 ~~~~~~~~~~l~~~~G~~v~~g~~~~-~~--~~~--~~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~  230 (269)
                      + ....++++++++ |+++.+|.... ..  ..+  ..    ..+..       +........ .. ...+.+..+++++
T Consensus       238 ~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~  313 (350)
T cd08248         238 D-TEKWALKLLKKG-GTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGF-FS-PSGSALDELAKLV  313 (350)
T ss_pred             H-HHHHHHHHhccC-CEEEEecCCcccccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEE-EC-CCHHHHHHHHHHH
Confidence            7 789999999996 99999985432 10  011  00    01110       011110000 01 1235688899999


Q ss_pred             HCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEee
Q 024295          231 KNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLIT  268 (269)
Q Consensus       231 ~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~  268 (269)
                      .++.+.+  .+++.+++++++++++.+.++.. .|++++
T Consensus       314 ~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~  350 (350)
T cd08248         314 EDGKIKP--VIDKVFPFEEVPEAYEKVESGHARGKTVIK  350 (350)
T ss_pred             hCCCEec--ccceeecHHHHHHHHHHHhcCCCceEEEeC
Confidence            9998653  46788999999999999887665 587763

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.91  E-value=5e-23  Score=173.84  Aligned_cols=239  Identities=24%  Similarity=0.287  Sum_probs=180.7

Q ss_pred             ccccCCceeeeecCeEEeeeec---cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEE
Q 024295           14 GLMLDSTSRMSVRGQKLYHIFS---CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAV   90 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~~---~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI   90 (269)
                      -.+|+++..+++ ||+|++...   .|+|++|+.++.+.++++|++++.++++.+++++.+||+++.....++++++|+|
T Consensus        71 ~~~G~~v~~~~~-Gd~V~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli  149 (319)
T cd08267          71 VAVGSGVTRFKV-GDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLI  149 (319)
T ss_pred             EEeCCCCCCCCC-CCEEEEeccCCCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEE
Confidence            345778888888 999987752   5899999999999999999999999999999999999999887778999999999


Q ss_pred             EcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh-h
Q 024295           91 LGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP-S  168 (269)
Q Consensus        91 ~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~-~  168 (269)
                      +|+ |++|++++++++..|+ +|++++++ ++.+.++++|.+++++...   .++.   ...+.+.++|++++|+++. .
T Consensus       150 ~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~---~~~~---~~~~~~~~~d~vi~~~~~~~~  221 (319)
T cd08267         150 NGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGADEVIDYTT---EDFV---ALTAGGEKYDVIFDAVGNSPF  221 (319)
T ss_pred             EcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCCEeecCCC---CCcc---hhccCCCCCcEEEECCCchHH
Confidence            996 9999999999999999 89988865 8888889999888887765   3443   3344555899999999842 2


Q ss_pred             HHHHHHHHcccCCcEEEEEccCCC-ccccc---hhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEE
Q 024295          169 LLSEALETTKVGKGKVIVIGVGVD-AMVPL---NVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHH  244 (269)
Q Consensus       169 ~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  244 (269)
                      .....+..++++ |+++.+|.... .....   ...... ....+.......  ..+.+.++++++.+++++  +.++++
T Consensus       222 ~~~~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~--~~~~~~  295 (319)
T cd08267         222 SLYRASLALKPG-GRYVSVGGGPSGLLLVLLLLPLTLGG-GGRRLKFFLAKP--NAEDLEQLAELVEEGKLK--PVIDSV  295 (319)
T ss_pred             HHHHhhhccCCC-CEEEEeccccccccccccccchhhcc-ccceEEEEEecC--CHHHHHHHHHHHHCCCee--eeeeeE
Confidence            334444458995 99999987653 11111   111111 222222222111  246788899999999865  347788


Q ss_pred             eehhhHHHHHHHhcCCCe-eeEEe
Q 024295          245 VKLEEIDKAIQLLKQPDC-VKVLI  267 (269)
Q Consensus       245 ~~~~~~~~a~~~~~~~~~-~k~vl  267 (269)
                      |++++++++++.+.++.. .|+++
T Consensus       296 ~~~~~i~~a~~~~~~~~~~~~vvv  319 (319)
T cd08267         296 YPLEDAPEAYRRLKSGRARGKVVI  319 (319)
T ss_pred             EcHHHHHHHHHHHhcCCCCCcEeC
Confidence            999999999999887655 46653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.91  E-value=1.2e-22  Score=170.55  Aligned_cols=231  Identities=19%  Similarity=0.259  Sum_probs=184.8

Q ss_pred             ccCCceeeeecCeEEeeee---ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295           16 MLDSTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG   92 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G   92 (269)
                      +|.++.++++ ||+|++..   ..|+|++|+.++...++++|+++++.+++.+++.+.+|++++.....+.++++++|+|
T Consensus        74 ~G~~~~~~~~-G~~V~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g  152 (309)
T cd05289          74 VGPGVTGFKV-GDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHG  152 (309)
T ss_pred             eCCCCCCCCC-CCEEEEccCCCCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEec
Confidence            4667777888 99999875   2489999999999999999999999999999999999999988777799999999999


Q ss_pred             C-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHH
Q 024295           93 L-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS  171 (269)
Q Consensus        93 ~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~  171 (269)
                      + |.+|++++++++..|+ +|++++.++ +.+.++++|.+.+++...   .++.+    ...+.++|+++|++++. ...
T Consensus       153 ~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~~~~~~~~---~~~~~----~~~~~~~d~v~~~~~~~-~~~  222 (309)
T cd05289         153 AAGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGADEVIDYTK---GDFER----AAAPGGVDAVLDTVGGE-TLA  222 (309)
T ss_pred             CCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCCEEEeCCC---Cchhh----ccCCCCceEEEECCchH-HHH
Confidence            6 9999999999999999 888888776 888888899888887665   44433    33445899999999987 779


Q ss_pred             HHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHH
Q 024295          172 EALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEID  251 (269)
Q Consensus       172 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~  251 (269)
                      .++++++++ |+++.+|.... ...    ....++.++........  .+.+.+++++++++.++  +.+++.|++++++
T Consensus       223 ~~~~~l~~~-g~~v~~g~~~~-~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  292 (309)
T cd05289         223 RSLALVKPG-GRLVSIAGPPP-AEQ----AAKRRGVRAGFVFVEPD--GEQLAELAELVEAGKLR--PVVDRVFPLEDAA  292 (309)
T ss_pred             HHHHHHhcC-cEEEEEcCCCc-chh----hhhhccceEEEEEeccc--HHHHHHHHHHHHCCCEE--EeeccEEcHHHHH
Confidence            999999996 99999986542 111    22335666665543221  35788899999999854  3467889999999


Q ss_pred             HHHHHhcCCCe-eeEEe
Q 024295          252 KAIQLLKQPDC-VKVLI  267 (269)
Q Consensus       252 ~a~~~~~~~~~-~k~vl  267 (269)
                      ++++.+..+.. .|+++
T Consensus       293 ~a~~~~~~~~~~~kvv~  309 (309)
T cd05289         293 EAHERLESGHARGKVVL  309 (309)
T ss_pred             HHHHHHHhCCCCCcEeC
Confidence            99998877655 46653

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.83  E-value=7.6e-20  Score=134.49  Aligned_cols=129  Identities=30%  Similarity=0.471  Sum_probs=117.9

Q ss_pred             hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHH
Q 024295           95 TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL  174 (269)
Q Consensus        95 ~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~  174 (269)
                      ++|++++|+||..|+ +|++++++++|++.++++|+++++++++   .++.+++++.+++.++|+||||+|.+..++.++
T Consensus         1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~~---~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~   76 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYSD---DDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAI   76 (130)
T ss_dssp             HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETTT---SSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhcccccccccc---cccccccccccccccceEEEEecCcHHHHHHHH
Confidence            589999999999996 9999999999999999999999999987   889999999998889999999999888999999


Q ss_pred             HHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHH
Q 024295          175 ETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCK  231 (269)
Q Consensus       175 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  231 (269)
                      ++++++ |+++.+|.+.....+++...++.+++++.+++...   .++++++++++.
T Consensus        77 ~~l~~~-G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~la  129 (130)
T PF00107_consen   77 KLLRPG-GRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGS---PEDFQEALQLLA  129 (130)
T ss_dssp             HHEEEE-EEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGG---HHHHHHHHHHHH
T ss_pred             HHhccC-CEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCC---HHHHHHHHHHhc
Confidence            999996 99999998875578888899999999999998665   477888888875

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.59  E-value=1.2e-13  Score=118.69  Aligned_cols=174  Identities=21%  Similarity=0.224  Sum_probs=135.8

Q ss_pred             HHHHHHhcC-CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhh
Q 024295           73 YGAAWKEAK-VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        73 ~~~l~~~~~-~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      +.++.+..+ ..+|++|+|+|.|++|+.+++.++..|+ +|+++++++.|.+.++.+|++.+ +        ..+.+   
T Consensus       189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~-~--------~~e~v---  255 (413)
T cd00401         189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEVM-T--------MEEAV---  255 (413)
T ss_pred             HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEEc-c--------HHHHH---
Confidence            344444434 3589999999999999999999999999 89999999999999999997532 1        11222   


Q ss_pred             hCCCCccEEEEccCChhHHHHH-HHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHH--HHHH
Q 024295          152 THGMGVDYCFECTGVPSLLSEA-LETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLP--TLLD  228 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~~~~~~~~-~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  228 (269)
                         .++|+|++|+|.+..+... ++.++++ |.++.+|..   +.+++...+..+++++.++....  ....++  ..+.
T Consensus       256 ---~~aDVVI~atG~~~~i~~~~l~~mk~G-gilvnvG~~---~~eId~~~L~~~el~i~g~~~~~--~~~~~~~g~aI~  326 (413)
T cd00401         256 ---KEGDIFVTTTGNKDIITGEHFEQMKDG-AIVCNIGHF---DVEIDVKGLKENAVEVVNIKPQV--DRYELPDGRRII  326 (413)
T ss_pred             ---cCCCEEEECCCCHHHHHHHHHhcCCCC-cEEEEeCCC---CCccCHHHHHhhccEEEEccCCc--ceEEcCCcchhh
Confidence               1689999999988777765 9999996 999999964   45677778888899998876432  112455  6899


Q ss_pred             HHHCCCC-CCCcceeEE-----eehh-hHHHHHHHhcCCCe--eeEEee
Q 024295          229 KCKNKEF-KLHQLLTHH-----VKLE-EIDKAIQLLKQPDC--VKVLIT  268 (269)
Q Consensus       229 l~~~g~~-~~~~~~~~~-----~~~~-~~~~a~~~~~~~~~--~k~vl~  268 (269)
                      ++.+|++ ++.+.++|.     ++++ ++.++++.+.++..  .|+++.
T Consensus       327 LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~  375 (413)
T cd00401         327 LLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFL  375 (413)
T ss_pred             hhhCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEEC
Confidence            9999998 888888888     8899 99999998877543  477654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.51  E-value=2.5e-13  Score=119.57  Aligned_cols=156  Identities=19%  Similarity=0.234  Sum_probs=114.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCcee-eCCCCCC----------CccHHHHHHh
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF-INPDDEP----------NKSISELVKG  150 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~~----------~~~~~~~i~~  150 (269)
                      ..++++|+|+|+|++|+++++.|+.+|+ +|+++|+++++++.++++|++.+ +|..+.+          ..++.+..++
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~  240 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA  240 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence            4578999999999999999999999999 89999999999999999999854 5553300          0123233333


Q ss_pred             h-hCC-CCccEEEEccCCh-----hH-HHHHHHHcccCCcEEEEEccCCCc--cccchhHhhhh-CCceEEeeeccCCCC
Q 024295          151 I-THG-MGVDYCFECTGVP-----SL-LSEALETTKVGKGKVIVIGVGVDA--MVPLNVIALAC-GGRTLKGTTFGGIKT  219 (269)
Q Consensus       151 ~-~~~-~~~d~v~d~~g~~-----~~-~~~~~~~l~~~~G~~v~~g~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~  219 (269)
                      . .+. .++|++|+|++.+     .. .+++++.+++| |+++.+|...+.  ..+.+...++. +++++.|..  +++ 
T Consensus       241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpG-gvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~--n~P-  316 (509)
T PRK09424        241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPG-SVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYT--DLP-  316 (509)
T ss_pred             HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCC-CEEEEEccCCCCCcccccCccceEeECCEEEEEeC--CCc-
Confidence            2 221 3799999999863     24 49999999997 999999975332  34454455664 899999876  232 


Q ss_pred             CCcHHHHHHHHHCCCCCCCccee
Q 024295          220 KSDLPTLLDKCKNKEFKLHQLLT  242 (269)
Q Consensus       220 ~~~~~~~~~l~~~g~~~~~~~~~  242 (269)
                      .+...++.+++.++.+++.++++
T Consensus       317 ~~~p~~As~lla~~~i~l~~lIt  339 (509)
T PRK09424        317 SRLPTQSSQLYGTNLVNLLKLLC  339 (509)
T ss_pred             hhHHHHHHHHHHhCCccHHHHhc
Confidence            23333689999998877665555

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.41  E-value=1.5e-13  Score=100.41  Aligned_cols=120  Identities=24%  Similarity=0.311  Sum_probs=75.9

Q ss_pred             CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC--ChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhC
Q 024295          128 FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG--VPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACG  205 (269)
Q Consensus       128 ~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g--~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~  205 (269)
                      +|+++++|+++   .++       ....++|+|||++|  .+..+..+++++ ++ |+++.++. .     ........+
T Consensus         1 LGAd~vidy~~---~~~-------~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~-G~~v~i~~-~-----~~~~~~~~~   62 (127)
T PF13602_consen    1 LGADEVIDYRD---TDF-------AGPGGVDVVIDTVGQTGESLLDASRKLL-PG-GRVVSIGG-D-----LPSFARRLK   62 (127)
T ss_dssp             CT-SEEEETTC---SHH-------HTTS-EEEEEESS-CCHHHCGGGCCCTE-EE-EEEEEE-S-H-----HHHHHHHHH
T ss_pred             CCcCEEecCCC---ccc-------cCCCCceEEEECCCCccHHHHHHHHHHC-CC-CEEEEECC-c-----ccchhhhhc
Confidence            68999999986   666       33349999999999  554446667777 96 99999983 1     111111111


Q ss_pred             CceEEeeeccCCC----CCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEe
Q 024295          206 GRTLKGTTFGGIK----TKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLI  267 (269)
Q Consensus       206 ~~~~~~~~~~~~~----~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl  267 (269)
                      ...+....+....    ..+.++++.+++.+|++++  .+.++||++++.+|++.++++.. +|+||
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~G~l~~--~i~~~f~l~~~~~A~~~l~~~~~~GKvVl  127 (127)
T PF13602_consen   63 GRSIRYSFLFSVDPNAIRAEALEELAELVAEGKLKP--PIDRVFPLEEAPEAHERLESGHARGKVVL  127 (127)
T ss_dssp             CHHCEEECCC-H--HHHHHHHHHHHHHHHHTTSS-----EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred             ccceEEEEEEecCCCchHHHHHHHHHHHHHCCCeEE--eeccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence            2222222221100    1245999999999999665  48889999999999999998876 69986

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.82  E-value=2.8e-08  Score=82.24  Aligned_cols=163  Identities=20%  Similarity=0.235  Sum_probs=100.1

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHhhhC
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGAA-KIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~-~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .+.++++++||.+|+|+ |..+.++++..|.. +|++++.+++..+.+++.    +...+- ...   .++.+ + .+.+
T Consensus        72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~-~~~---~d~~~-l-~~~~  144 (272)
T PRK11873         72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVE-FRL---GEIEA-L-PVAD  144 (272)
T ss_pred             hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEE-EEE---cchhh-C-CCCC
Confidence            35788999999999988 98888888887763 799999999988888763    322211 111   22211 1 1122


Q ss_pred             CCCccEEEEcc------CChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHH
Q 024295          154 GMGVDYCFECT------GVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLL  227 (269)
Q Consensus       154 ~~~~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (269)
                       ..||+|+...      +.+..+.++.+.|++| |+++..+.......+    ....+...+.+.....   .....++.
T Consensus       145 -~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpG-G~l~i~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~e~~  215 (272)
T PRK11873        145 -NSVDVIISNCVINLSPDKERVFKEAFRVLKPG-GRFAISDVVLRGELP----EEIRNDAELYAGCVAG---ALQEEEYL  215 (272)
T ss_pred             -CceeEEEEcCcccCCCCHHHHHHHHHHHcCCC-cEEEEEEeeccCCCC----HHHHHhHHHHhccccC---CCCHHHHH
Confidence             3899998432      2345689999999997 999987654322111    1111222222111111   12455666


Q ss_pred             HHHHC-CCCCCCcceeEEeehhhHHHHHHHh
Q 024295          228 DKCKN-KEFKLHQLLTHHVKLEEIDKAIQLL  257 (269)
Q Consensus       228 ~l~~~-g~~~~~~~~~~~~~~~~~~~a~~~~  257 (269)
                      +++++ |-..+.......+++++..++++.+
T Consensus       216 ~~l~~aGf~~v~i~~~~~~~l~~~~~~~~~~  246 (272)
T PRK11873        216 AMLAEAGFVDITIQPKREYRIPDAREFLEDW  246 (272)
T ss_pred             HHHHHCCCCceEEEeccceecccHHHHHHHh
Confidence            77766 4333333344568889999999988

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.72  E-value=2e-07  Score=82.46  Aligned_cols=108  Identities=21%  Similarity=0.330  Sum_probs=80.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCcee-eCCCCC----------CCccHHHHHHhh
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF-INPDDE----------PNKSISELVKGI  151 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~----------~~~~~~~~i~~~  151 (269)
                      .++.+|+|+|+|.+|+++++.++.+|+ .|+++++++++++.++++|++.+ ++..+.          -.+++.+..++.
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            356899999999999999999999999 79999999999999999998753 232110          012333333332


Q ss_pred             hC--CCCccEEEEcc---CChh---HHHHHHHHcccCCcEEEEEccCCC
Q 024295          152 TH--GMGVDYCFECT---GVPS---LLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       152 ~~--~~~~d~v~d~~---g~~~---~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                      ..  ..++|++|+|+   |.+.   ..++.++.+++| +.++.++...+
T Consensus       241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG-svIVDlA~d~G  288 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG-SVIVDLAAEQG  288 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC-CEEEEeeeCCC
Confidence            22  24799999999   6544   467889999997 99999876544

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.53  E-value=2.1e-06  Score=74.62  Aligned_cols=102  Identities=25%  Similarity=0.305  Sum_probs=77.5

Q ss_pred             HHHHHHhcCCC-CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhh
Q 024295           73 YGAAWKEAKVE-KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        73 ~~~l~~~~~~~-~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      |.++.+...+. .+++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|+. +.        ++.+.+   
T Consensus       199 ~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~-v~--------~l~eal---  265 (425)
T PRK05476        199 LDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR-VM--------TMEEAA---  265 (425)
T ss_pred             HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE-ec--------CHHHHH---
Confidence            44444443444 89999999999999999999999999 999999988877666666654 22        122222   


Q ss_pred             hCCCCccEEEEccCChhHHH-HHHHHcccCCcEEEEEccCC
Q 024295          152 THGMGVDYCFECTGVPSLLS-EALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~  191 (269)
                       .  ++|++++++|.+..+. ..+..++++ +.++..|...
T Consensus       266 -~--~aDVVI~aTG~~~vI~~~~~~~mK~G-ailiNvG~~d  302 (425)
T PRK05476        266 -E--LGDIFVTATGNKDVITAEHMEAMKDG-AILANIGHFD  302 (425)
T ss_pred             -h--CCCEEEECCCCHHHHHHHHHhcCCCC-CEEEEcCCCC
Confidence             1  7899999999876665 678889996 8999988765

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.44  E-value=5.4e-06  Score=71.66  Aligned_cols=93  Identities=27%  Similarity=0.317  Sum_probs=73.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      ...|++|+|+|.|.+|..+++.++..|+ +|+++++++.+...++..|+. +.+        ..+.+      .+.|+++
T Consensus       192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~-v~~--------leeal------~~aDVVI  255 (406)
T TIGR00936       192 LIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFR-VMT--------MEEAA------KIGDIFI  255 (406)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCE-eCC--------HHHHH------hcCCEEE
Confidence            3689999999999999999999999999 899999888777667666753 221        12222      1679999


Q ss_pred             EccCChhHHH-HHHHHcccCCcEEEEEccCC
Q 024295          162 ECTGVPSLLS-EALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       162 d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~  191 (269)
                      +++|.+..+. ..+..++++ +.++.+|...
T Consensus       256 taTG~~~vI~~~~~~~mK~G-ailiN~G~~~  285 (406)
T TIGR00936       256 TATGNKDVIRGEHFENMKDG-AIVANIGHFD  285 (406)
T ss_pred             ECCCCHHHHHHHHHhcCCCC-cEEEEECCCC
Confidence            9999887666 488889996 9999988754

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.41  E-value=1.3e-06  Score=73.60  Aligned_cols=109  Identities=22%  Similarity=0.264  Sum_probs=79.6

Q ss_pred             CceEEcCCCCCcccccccccchhhhHHHHHHhcCC---CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchH-H
Q 024295           48 NYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKV---EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKK-E  123 (269)
Q Consensus        48 ~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~---~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~-~  123 (269)
                      ...+++|+.++.+.+.... +.++++.++......   .++.+|+|+|+|.+|..+++.++..|..+|+++++++++. +
T Consensus       139 ~~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~  217 (311)
T cd05213         139 QKAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEE  217 (311)
T ss_pred             HHHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            3567888888888887765 777887775433222   3689999999999999999999988877999999998765 5


Q ss_pred             HHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhH
Q 024295          124 KGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  169 (269)
Q Consensus       124 ~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  169 (269)
                      .++++|.. +++.     +++.+.+.      .+|+||.|++.+..
T Consensus       218 la~~~g~~-~~~~-----~~~~~~l~------~aDvVi~at~~~~~  251 (311)
T cd05213         218 LAKELGGN-AVPL-----DELLELLN------EADVVISATGAPHY  251 (311)
T ss_pred             HHHHcCCe-EEeH-----HHHHHHHh------cCCEEEECCCCCch
Confidence            66778863 3322     22222221      58999999998754

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=2e-06  Score=66.84  Aligned_cols=122  Identities=18%  Similarity=0.254  Sum_probs=86.9

Q ss_pred             cCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHH----HHhC
Q 024295           53 VDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEK----GKAF  128 (269)
Q Consensus        53 vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~----~~~~  128 (269)
                      .+..++....-.+.-+...|.  +.+...++++++||-+|+|+ |+.++-+++..+  +|+.+++.++-.+.    ++.+
T Consensus        43 ~d~~lpi~~gqtis~P~~vA~--m~~~L~~~~g~~VLEIGtGs-GY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~l  117 (209)
T COG2518          43 EDRALPIGCGQTISAPHMVAR--MLQLLELKPGDRVLEIGTGS-GYQAAVLARLVG--RVVSIERIEELAEQARRNLETL  117 (209)
T ss_pred             cCCcccCCCCceecCcHHHHH--HHHHhCCCCCCeEEEECCCc-hHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHc
Confidence            344455556666666666664  56788999999999999987 999999999887  89999988764444    4557


Q ss_pred             CCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295          129 GMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       129 g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      |...+.-...    |   -...+.+...||.|+-+.+.+..-+..++.|++| |+++.-
T Consensus       118 g~~nV~v~~g----D---G~~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~g-Grlv~P  168 (209)
T COG2518         118 GYENVTVRHG----D---GSKGWPEEAPYDRIIVTAAAPEVPEALLDQLKPG-GRLVIP  168 (209)
T ss_pred             CCCceEEEEC----C---cccCCCCCCCcCEEEEeeccCCCCHHHHHhcccC-CEEEEE
Confidence            7643322111    1   1233444459999998887765557889999997 988765

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.38  E-value=1e-05  Score=67.66  Aligned_cols=95  Identities=19%  Similarity=0.256  Sum_probs=74.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+++++|+|.|.+|+.+++.++.+|+ +|+++++++++.+.++++|...+ ..     .++    .+...  ++|+||++
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~~~-~~-----~~l----~~~l~--~aDiVI~t  217 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLSPF-HL-----SEL----AEEVG--KIDIIFNT  217 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeee-cH-----HHH----HHHhC--CCCEEEEC
Confidence            58999999999999999999999999 99999999888888888886532 11     122    22222  68999999


Q ss_pred             cCChhHHHHHHHHcccCCcEEEEEccCCC
Q 024295          164 TGVPSLLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       164 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                      ++........++.++++ +.++.++..++
T Consensus       218 ~p~~~i~~~~l~~~~~g-~vIIDla~~pg  245 (296)
T PRK08306        218 IPALVLTKEVLSKMPPE-ALIIDLASKPG  245 (296)
T ss_pred             CChhhhhHHHHHcCCCC-cEEEEEccCCC
Confidence            87553456777889996 99998886654

>PLN02494 adenosylhomocysteinase

Probab=98.30  E-value=1.4e-05  Score=69.90  Aligned_cols=102  Identities=20%  Similarity=0.282  Sum_probs=78.2

Q ss_pred             HHHHHHhcCC-CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhh
Q 024295           73 YGAAWKEAKV-EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        73 ~~~l~~~~~~-~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      +.++.+...+ ..|++|+|+|.|.+|..+++.++..|+ +|+++++++.+...+...|... +        ...+.+.  
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~v-v--------~leEal~--  308 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQV-L--------TLEDVVS--  308 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCee-c--------cHHHHHh--
Confidence            3344444443 579999999999999999999999999 8999998887776777777542 1        1222221  


Q ss_pred             hCCCCccEEEEccCChhH-HHHHHHHcccCCcEEEEEccCC
Q 024295          152 THGMGVDYCFECTGVPSL-LSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                          ..|+++.++|.... ....+..++++ +.++.+|...
T Consensus       309 ----~ADVVI~tTGt~~vI~~e~L~~MK~G-AiLiNvGr~~  344 (477)
T PLN02494        309 ----EADIFVTTTGNKDIIMVDHMRKMKNN-AIVCNIGHFD  344 (477)
T ss_pred             ----hCCEEEECCCCccchHHHHHhcCCCC-CEEEEcCCCC
Confidence                57999999997754 47899999996 9999999754

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.27  E-value=3.8e-05  Score=62.76  Aligned_cols=151  Identities=18%  Similarity=0.254  Sum_probs=93.8

Q ss_pred             CceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHH
Q 024295           19 STSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGL   98 (269)
Q Consensus        19 ~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~   98 (269)
                      ....+.+ |++++...   +|.+|.. +...++++++.+++..+..-. +.. ....+.  ..+.++.+||.+|+|+ |.
T Consensus        63 ~~~p~~~-g~~~~i~p---~~~~~~~-~~~~~i~i~p~~afgtg~h~t-t~~-~l~~l~--~~~~~~~~VLDiGcGs-G~  132 (250)
T PRK00517         63 YFHPIRI-GDRLWIVP---SWEDPPD-PDEINIELDPGMAFGTGTHPT-TRL-CLEALE--KLVLPGKTVLDVGCGS-GI  132 (250)
T ss_pred             HCCCEEE-cCCEEEEC---CCcCCCC-CCeEEEEECCCCccCCCCCHH-HHH-HHHHHH--hhcCCCCEEEEeCCcH-HH
Confidence            3444667 77655332   5777755 778889999999888765222 111 122222  1256889999999987 88


Q ss_pred             HHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh---hHHHHHHH
Q 024295           99 GAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP---SLLSEALE  175 (269)
Q Consensus        99 ~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~---~~~~~~~~  175 (269)
                      .++.+++ .|+.+|+++|.++...+.+++.....-+...    -.+      ..+...||+|+-.....   ..+..+.+
T Consensus       133 l~i~~~~-~g~~~v~giDis~~~l~~A~~n~~~~~~~~~----~~~------~~~~~~fD~Vvani~~~~~~~l~~~~~~  201 (250)
T PRK00517        133 LAIAAAK-LGAKKVLAVDIDPQAVEAARENAELNGVELN----VYL------PQGDLKADVIVANILANPLLELAPDLAR  201 (250)
T ss_pred             HHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCce----EEE------ccCCCCcCEEEEcCcHHHHHHHHHHHHH
Confidence            8876555 5775799999999888877653111000000    000      00111599998655432   24567888


Q ss_pred             HcccCCcEEEEEccCC
Q 024295          176 TTKVGKGKVIVIGVGV  191 (269)
Q Consensus       176 ~l~~~~G~~v~~g~~~  191 (269)
                      .+++| |+++..|...
T Consensus       202 ~Lkpg-G~lilsgi~~  216 (250)
T PRK00517        202 LLKPG-GRLILSGILE  216 (250)
T ss_pred             hcCCC-cEEEEEECcH
Confidence            99996 9999887543

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.13  E-value=3.3e-05  Score=66.59  Aligned_cols=99  Identities=20%  Similarity=0.238  Sum_probs=69.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      +..+|+|+|+|.+|+.+++.++.+|+ +|+++++++++.+.+.. ++........+  ..++.+.+    .  .+|++++
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~v~~~~~~--~~~l~~~l----~--~aDvVI~  236 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGRIHTRYSN--AYEIEDAV----K--RADLLIG  236 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCceeEeccCC--HHHHHHHH----c--cCCEEEE
Confidence            34569999999999999999999999 89999998888777654 55432222221  12232222    2  6899999


Q ss_pred             ccC---C--hh-HHHHHHHHcccCCcEEEEEccCCC
Q 024295          163 CTG---V--PS-LLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       163 ~~g---~--~~-~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                      +++   .  +. .....++.++++ +.++.++...+
T Consensus       237 a~~~~g~~~p~lit~~~l~~mk~g-~vIvDva~d~G  271 (370)
T TIGR00518       237 AVLIPGAKAPKLVSNSLVAQMKPG-AVIVDVAIDQG  271 (370)
T ss_pred             ccccCCCCCCcCcCHHHHhcCCCC-CEEEEEecCCC
Confidence            983   2  21 136788889996 99999886544

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.04  E-value=6.7e-06  Score=75.14  Aligned_cols=80  Identities=23%  Similarity=0.273  Sum_probs=58.8

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC---------------------cchHHHHHhCCCceeeCCCCC
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN---------------------PWKKEKGKAFGMTDFINPDDE  139 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~---------------------~~~~~~~~~~g~~~v~~~~~~  139 (269)
                      ..+++++|+|+|+|+.|+++++.++..|+ +|+++++.                     +.+.+.++++|++..++....
T Consensus       133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~  211 (564)
T PRK12771        133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG  211 (564)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence            36679999999999999999999999999 79889853                     245566788998877764310


Q ss_pred             CCccH-HHHHHhhhCCCCccEEEEccCChh
Q 024295          140 PNKSI-SELVKGITHGMGVDYCFECTGVPS  168 (269)
Q Consensus       140 ~~~~~-~~~i~~~~~~~~~d~v~d~~g~~~  168 (269)
                        .+. .+.+.    . ++|+||+++|...
T Consensus       212 --~~~~~~~~~----~-~~D~Vi~AtG~~~  234 (564)
T PRK12771        212 --EDITLEQLE----G-EFDAVFVAIGAQL  234 (564)
T ss_pred             --CcCCHHHHH----h-hCCEEEEeeCCCC
Confidence              111 12221    2 6999999999753

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.02  E-value=9e-05  Score=65.05  Aligned_cols=93  Identities=24%  Similarity=0.322  Sum_probs=71.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      .-.|++|+|+|.|.+|..+++.++..|+ +|+++++++.+...+...|+..         .++.+.++      ..|+++
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~~---------~~leell~------~ADIVI  314 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQV---------VTLEDVVE------TADIFV  314 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCcee---------ccHHHHHh------cCCEEE
Confidence            3478999999999999999999999999 8999988776665555556432         11222221      689999


Q ss_pred             EccCChhHHH-HHHHHcccCCcEEEEEccCC
Q 024295          162 ECTGVPSLLS-EALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       162 d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~  191 (269)
                      .++|....+. ..+..++++ +.++.+|...
T Consensus       315 ~atGt~~iI~~e~~~~MKpG-AiLINvGr~d  344 (476)
T PTZ00075        315 TATGNKDIITLEHMRRMKNN-AIVGNIGHFD  344 (476)
T ss_pred             ECCCcccccCHHHHhccCCC-cEEEEcCCCc
Confidence            9998765554 889999996 9999998764

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.00  E-value=1.7e-05  Score=69.73  Aligned_cols=90  Identities=21%  Similarity=0.241  Sum_probs=63.8

Q ss_pred             chhhhHHHHHHhcC---CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHhCCCceeeCCCCCCCcc
Q 024295           68 GFTTGYGAAWKEAK---VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKE-KGKAFGMTDFINPDDEPNKS  143 (269)
Q Consensus        68 ~~~~a~~~l~~~~~---~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~-~~~~~g~~~v~~~~~~~~~~  143 (269)
                      +.++++.++.....   -.++.+|+|+|+|.+|.++++.++..|+++|+++++++++.. .++++|.+ +++.     .+
T Consensus       162 ~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~-~~~~-----~~  235 (423)
T PRK00045        162 AVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGE-AIPL-----DE  235 (423)
T ss_pred             CcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc-EeeH-----HH
Confidence            56666666543322   257899999999999999999999999878999999988765 56667753 3222     12


Q ss_pred             HHHHHHhhhCCCCccEEEEccCChhH
Q 024295          144 ISELVKGITHGMGVDYCFECTGVPSL  169 (269)
Q Consensus       144 ~~~~i~~~~~~~~~d~v~d~~g~~~~  169 (269)
                      ..+.+      .++|+||+|++.+..
T Consensus       236 ~~~~l------~~aDvVI~aT~s~~~  255 (423)
T PRK00045        236 LPEAL------AEADIVISSTGAPHP  255 (423)
T ss_pred             HHHHh------ccCCEEEECCCCCCc
Confidence            22222      268999999987543

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.95  E-value=0.00017  Score=60.00  Aligned_cols=110  Identities=16%  Similarity=0.193  Sum_probs=75.9

Q ss_pred             chhhhHHHHHHhcCC----CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCcc
Q 024295           68 GFTTGYGAAWKEAKV----EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKS  143 (269)
Q Consensus        68 ~~~~a~~~l~~~~~~----~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  143 (269)
                      ...+|.+++......    -.+++++|+|.|.+|.+++..++..|+ +|++.++++++.+.+.+.|... +..     .+
T Consensus       130 ~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~~~-~~~-----~~  202 (287)
T TIGR02853       130 SIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGLIP-FPL-----NK  202 (287)
T ss_pred             cHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCee-ecH-----HH
Confidence            455666654322221    257899999999999999999999999 9999999988777776666432 111     12


Q ss_pred             HHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          144 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       144 ~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      +.    +...  .+|+|++++...-.-...+..++++ ..++.++..+
T Consensus       203 l~----~~l~--~aDiVint~P~~ii~~~~l~~~k~~-aliIDlas~P  243 (287)
T TIGR02853       203 LE----EKVA--EIDIVINTIPALVLTADVLSKLPKH-AVIIDLASKP  243 (287)
T ss_pred             HH----HHhc--cCCEEEECCChHHhCHHHHhcCCCC-eEEEEeCcCC
Confidence            22    2221  7899999986542234567778885 8888887654

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.95  E-value=3.3e-05  Score=56.78  Aligned_cols=97  Identities=23%  Similarity=0.263  Sum_probs=61.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCc--eeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMT--DFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      ++++++|+|+|.+|.+++..+...|+++|+.+.|+.+|.+.+.+ ++..  .++...     ++.+.+.      .+|++
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~-----~~~~~~~------~~Div   79 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLE-----DLEEALQ------EADIV   79 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGG-----GHCHHHH------TESEE
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHH-----HHHHHHh------hCCeE
Confidence            68999999999999999999999999889999999888777644 5322  233332     2222221      78999


Q ss_pred             EEccCChhH--HHHHHHHcccCCcEEEEEccCC
Q 024295          161 FECTGVPSL--LSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       161 ~d~~g~~~~--~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      ++|++.+..  ....+.......+.++.++.+.
T Consensus        80 I~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr  112 (135)
T PF01488_consen   80 INATPSGMPIITEEMLKKASKKLRLVIDLAVPR  112 (135)
T ss_dssp             EE-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-
T ss_pred             EEecCCCCcccCHHHHHHHHhhhhceeccccCC
Confidence            999976422  2233332222013666665443

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.94  E-value=0.00015  Score=60.44  Aligned_cols=98  Identities=23%  Similarity=0.301  Sum_probs=63.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      ..++++||-+|+|+ |..++.+++ .|+.+|++++.++...+.+++.    +....+....   .+    .....++ +|
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~---~~----~~~~~~~-~f  226 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL---IY----LEQPIEG-KA  226 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEe---cc----cccccCC-Cc
Confidence            45789999999988 888777665 5766999999998877777652    2111110000   11    1111223 89


Q ss_pred             cEEEEccCCh---hHHHHHHHHcccCCcEEEEEccC
Q 024295          158 DYCFECTGVP---SLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       158 d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      |+|+......   ..+..+.+.+++| |.++..|..
T Consensus       227 DlVvan~~~~~l~~ll~~~~~~Lkpg-G~li~sgi~  261 (288)
T TIGR00406       227 DVIVANILAEVIKELYPQFSRLVKPG-GWLILSGIL  261 (288)
T ss_pred             eEEEEecCHHHHHHHHHHHHHHcCCC-cEEEEEeCc
Confidence            9998655332   2466778999996 999887754

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK08324 short chain dehydrogenase; Validated

Probab=97.92  E-value=0.00013  Score=68.30  Aligned_cols=115  Identities=17%  Similarity=0.161  Sum_probs=71.9

Q ss_pred             CcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEE
Q 024295           37 STWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGI  115 (269)
Q Consensus        37 g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~  115 (269)
                      -++++|..+++..++.+ +..+.+++.....+          .....+++++||+|+ |.+|.+.++.+...|+ +|+++
T Consensus       385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~~----------~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~  452 (681)
T PRK08324        385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQRMP----------KPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLA  452 (681)
T ss_pred             hhcCCccCCChhhhcce-eeehhhhhhhhcCC----------CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEE
Confidence            35677777777777766 55555655421100          122336789999985 9999999999999999 99999


Q ss_pred             cCCcchHHHHHh-CCC-----ceeeCCCCCCCccHHHHHHhhhC-CCCccEEEEccC
Q 024295          116 DKNPWKKEKGKA-FGM-----TDFINPDDEPNKSISELVKGITH-GMGVDYCFECTG  165 (269)
Q Consensus       116 ~~~~~~~~~~~~-~g~-----~~v~~~~~~~~~~~~~~i~~~~~-~~~~d~v~d~~g  165 (269)
                      ++++++.+.+.+ ++.     ....|..+  .....+.+.+... ..++|++|+++|
T Consensus       453 ~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd--~~~v~~~~~~~~~~~g~iDvvI~~AG  507 (681)
T PRK08324        453 DLDEEAAEAAAAELGGPDRALGVACDVTD--EAAVQAAFEEAALAFGGVDIVVSNAG  507 (681)
T ss_pred             eCCHHHHHHHHHHHhccCcEEEEEecCCC--HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            998877665433 432     11223332  1223233333211 127999999998

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.85  E-value=0.00014  Score=63.03  Aligned_cols=109  Identities=13%  Similarity=0.123  Sum_probs=74.9

Q ss_pred             chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHH
Q 024295           68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL  147 (269)
Q Consensus        68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~  147 (269)
                      +-...+..+.+..+++++++||.+|+|. |..+..+++..|+ +|++++.+++..+.+++.....-++...   .++   
T Consensus       151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG~-G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~~---~D~---  222 (383)
T PRK11705        151 AQEAKLDLICRKLQLKPGMRVLDIGCGW-GGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIRL---QDY---  222 (383)
T ss_pred             HHHHHHHHHHHHhCCCCCCEEEEeCCCc-cHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEEE---Cch---
Confidence            3334444556778889999999999975 8888889988898 9999999999999887743211111111   222   


Q ss_pred             HHhhhCCCCccEEEE-----ccCC---hhHHHHHHHHcccCCcEEEEEc
Q 024295          148 VKGITHGMGVDYCFE-----CTGV---PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       148 i~~~~~~~~~d~v~d-----~~g~---~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                       .+. ++ .||.|+.     .++.   +..+..+.+.|++| |.++...
T Consensus       223 -~~l-~~-~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG-G~lvl~~  267 (383)
T PRK11705        223 -RDL-NG-QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPD-GLFLLHT  267 (383)
T ss_pred             -hhc-CC-CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence             122 23 7998864     2333   34578888999997 9988754

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.84  E-value=3.9e-05  Score=60.58  Aligned_cols=114  Identities=18%  Similarity=0.299  Sum_probs=71.5

Q ss_pred             cccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHh----CCCceeeCCC
Q 024295           63 SFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAA-KIIGIDKNPWKKEKGKA----FGMTDFINPD  137 (269)
Q Consensus        63 a~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~-~v~~~~~~~~~~~~~~~----~g~~~v~~~~  137 (269)
                      ..+..+...|.  +.+...++++++||.+|+|+ |+.++-+++..|.. +|+.+++.++-.+.+++    ++.+.+.-..
T Consensus        53 ~~is~P~~~a~--~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~  129 (209)
T PF01135_consen   53 QTISAPSMVAR--MLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV  129 (209)
T ss_dssp             EEE--HHHHHH--HHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred             eechHHHHHHH--HHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence            33444444443  45777899999999999986 99999999988754 69999988765555543    4543221111


Q ss_pred             CCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295          138 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       138 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                          .+.   ...+....+||.|+-+.+.+..-...++.|++| |++|..
T Consensus       130 ----gdg---~~g~~~~apfD~I~v~~a~~~ip~~l~~qL~~g-GrLV~p  171 (209)
T PF01135_consen  130 ----GDG---SEGWPEEAPFDRIIVTAAVPEIPEALLEQLKPG-GRLVAP  171 (209)
T ss_dssp             ----S-G---GGTTGGG-SEEEEEESSBBSS--HHHHHTEEEE-EEEEEE
T ss_pred             ----cch---hhccccCCCcCEEEEeeccchHHHHHHHhcCCC-cEEEEE
Confidence                111   111222348999998777665557889999996 998874

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.83  E-value=0.00028  Score=53.89  Aligned_cols=104  Identities=20%  Similarity=0.285  Sum_probs=71.8

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCceeeCCCCCCCccHHHHHHhhhC
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .+.++++++.++-+|+|+ |..++++++..-..+|++++++++..+..+    +||.+.+..-.    .+..+.+.++  
T Consensus        28 s~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~----g~Ap~~L~~~--  100 (187)
T COG2242          28 SKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVE----GDAPEALPDL--  100 (187)
T ss_pred             HhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEe----ccchHhhcCC--
Confidence            456788999888889876 888889995544459999999998887764    47766433222    2333333322  


Q ss_pred             CCCccEEEEccCC--hhHHHHHHHHcccCCcEEEEEccC
Q 024295          154 GMGVDYCFECTGV--PSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       154 ~~~~d~v~d~~g~--~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                       ..+|.+|--=|.  +..++.++..++++ |++|.-...
T Consensus       101 -~~~daiFIGGg~~i~~ile~~~~~l~~g-grlV~nait  137 (187)
T COG2242         101 -PSPDAIFIGGGGNIEEILEAAWERLKPG-GRLVANAIT  137 (187)
T ss_pred             -CCCCEEEECCCCCHHHHHHHHHHHcCcC-CeEEEEeec
Confidence             268999853332  33588999999997 999876543

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.79  E-value=0.00043  Score=54.43  Aligned_cols=102  Identities=23%  Similarity=0.401  Sum_probs=69.5

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CC-CceeeCCCCCCCccHHHHHHhh
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FG-MTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g-~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      ....++++++||.+|+|+ |..++.+++..+. .+|++++.+++..+.+++    ++ .+.+....    .+..+.+...
T Consensus        34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~----~d~~~~l~~~  108 (198)
T PRK00377         34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK----GEAPEILFTI  108 (198)
T ss_pred             HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE----echhhhHhhc
Confidence            456788999999999988 9999999987653 389999999888776643    55 22221111    2222222222


Q ss_pred             hCCCCccEEEEccCC---hhHHHHHHHHcccCCcEEEEE
Q 024295          152 THGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~  187 (269)
                       . ..+|.||...+.   ...+..+.+.++++ |+++..
T Consensus       109 -~-~~~D~V~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~  144 (198)
T PRK00377        109 -N-EKFDRIFIGGGSEKLKEIISASWEIIKKG-GRIVID  144 (198)
T ss_pred             -C-CCCCEEEECCCcccHHHHHHHHHHHcCCC-cEEEEE
Confidence             2 279999975442   33577888899996 998753

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.77  E-value=0.0004  Score=54.93  Aligned_cols=107  Identities=18%  Similarity=0.251  Sum_probs=76.0

Q ss_pred             HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhh
Q 024295           77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      ...++.+..+++|-+|.+. |+.++++|..+. -.+++.+++++++.+.+++    .|.+..+.-..  -.+..+.+.+.
T Consensus        52 ~~L~~~~~~k~iLEiGT~~-GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~--~gdal~~l~~~  128 (219)
T COG4122          52 RLLARLSGPKRILEIGTAI-GYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLL--GGDALDVLSRL  128 (219)
T ss_pred             HHHHHhcCCceEEEeeccc-CHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEe--cCcHHHHHHhc
Confidence            3456677889999999754 999999999876 3389999999999988865    46544222211  02555666553


Q ss_pred             hCCCCccEEE-Ecc--CChhHHHHHHHHcccCCcEEEEEc
Q 024295          152 THGMGVDYCF-ECT--GVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       152 ~~~~~~d~v~-d~~--g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ..+ .||+|| |+.  ..+..++.+++++++| |.++.=.
T Consensus       129 ~~~-~fDliFIDadK~~yp~~le~~~~lLr~G-Gliv~DN  166 (219)
T COG4122         129 LDG-SFDLVFIDADKADYPEYLERALPLLRPG-GLIVADN  166 (219)
T ss_pred             cCC-CccEEEEeCChhhCHHHHHHHHHHhCCC-cEEEEee
Confidence            334 899997 555  3466799999999996 8877654

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.72  E-value=0.00011  Score=64.52  Aligned_cols=113  Identities=17%  Similarity=0.205  Sum_probs=71.8

Q ss_pred             cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHH---HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeE
Q 024295           36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAA---WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKI  112 (269)
Q Consensus        36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l---~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v  112 (269)
                      ++.|++++.++. .+.. ...++.       .+.+.++.++   .......++++|+|+|+|.+|..+++.++..|+.+|
T Consensus       137 ~~lf~~a~~~~k-~vr~-~t~i~~-------~~vSv~~~Av~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V  207 (417)
T TIGR01035       137 ERLFQKAFSVGK-RVRT-ETDISA-------GAVSISSAAVELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKI  207 (417)
T ss_pred             HHHHHHHHHHhh-hhhh-hcCCCC-------CCcCHHHHHHHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCEE
Confidence            478899988876 3322 111110       1122222222   223334578999999999999999999999996699


Q ss_pred             EEEcCCcchHH-HHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhH
Q 024295          113 IGIDKNPWKKE-KGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  169 (269)
Q Consensus       113 ~~~~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  169 (269)
                      ++++++.++.. .++++|.. .+..     .+..+.+      .++|+||.|++.+..
T Consensus       208 ~v~~rs~~ra~~la~~~g~~-~i~~-----~~l~~~l------~~aDvVi~aT~s~~~  253 (417)
T TIGR01035       208 LIANRTYERAEDLAKELGGE-AVKF-----EDLEEYL------AEADIVISSTGAPHP  253 (417)
T ss_pred             EEEeCCHHHHHHHHHHcCCe-EeeH-----HHHHHHH------hhCCEEEECCCCCCc
Confidence            99999887755 56667754 2221     2222222      178999999987543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.71  E-value=0.00014  Score=59.46  Aligned_cols=105  Identities=16%  Similarity=0.244  Sum_probs=76.7

Q ss_pred             hHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccH
Q 024295           72 GYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSI  144 (269)
Q Consensus        72 a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~  144 (269)
                      ++..+.++.++++|.+||-+|+|- |.+++-+|+.+|+ +|++++-|++..+.+++    .|..   .+...+       
T Consensus        60 k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d-------  130 (283)
T COG2230          60 KLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD-------  130 (283)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecc-------
Confidence            444467889999999999999987 8889999999999 99999999988887765    4432   121111       


Q ss_pred             HHHHHhhhCCCCccEE-----EEccCC---hhHHHHHHHHcccCCcEEEEEccCC
Q 024295          145 SELVKGITHGMGVDYC-----FECTGV---PSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       145 ~~~i~~~~~~~~~d~v-----~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                         .++.. + .||-|     |+.+|.   +..+..+.+.|+++ |++++.....
T Consensus       131 ---~rd~~-e-~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~-G~~llh~I~~  179 (283)
T COG2230         131 ---YRDFE-E-PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG-GRMLLHSITG  179 (283)
T ss_pred             ---ccccc-c-ccceeeehhhHHHhCcccHHHHHHHHHhhcCCC-ceEEEEEecC
Confidence               11221 2 48876     455664   44688899999996 9998876555

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.71  E-value=0.0002  Score=56.98  Aligned_cols=101  Identities=24%  Similarity=0.346  Sum_probs=68.9

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELV  148 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i  148 (269)
                      +.....++++++||-+|+|. |..+..+++..+. .+|++++.+++..+.+++    .|..  .++..+      ..   
T Consensus        68 ~~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd------~~---  137 (212)
T PRK13942         68 MCELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD------GT---  137 (212)
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC------cc---
Confidence            44667889999999999986 8888888887764 389999999887776654    3432  122211      10   


Q ss_pred             HhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295          149 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      ..+.+...||+|+-....+......++.|++| |+++..
T Consensus       138 ~~~~~~~~fD~I~~~~~~~~~~~~l~~~Lkpg-G~lvi~  175 (212)
T PRK13942        138 LGYEENAPYDRIYVTAAGPDIPKPLIEQLKDG-GIMVIP  175 (212)
T ss_pred             cCCCcCCCcCEEEECCCcccchHHHHHhhCCC-cEEEEE
Confidence            01112238999875544444567888999997 998774

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.70  E-value=0.00066  Score=57.31  Aligned_cols=102  Identities=25%  Similarity=0.232  Sum_probs=71.2

Q ss_pred             HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhh
Q 024295           77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      .+...++++++||.+|+|+ |..++.+++..+. ..|++++.+++..+.+++    .|.+.+....    .+..+.+.  
T Consensus        73 l~~L~i~~g~~VLDIG~Gt-G~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~----gD~~~~~~--  145 (322)
T PRK13943         73 MEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVC----GDGYYGVP--  145 (322)
T ss_pred             HHhcCCCCCCEEEEEeCCc-cHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe----CChhhccc--
Confidence            4566788999999999985 9999999998764 269999999887666544    5554332211    22222221  


Q ss_pred             hCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295          152 THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                       +...+|+|+.+.+.+......++.++++ |+++..
T Consensus       146 -~~~~fD~Ii~~~g~~~ip~~~~~~Lkpg-G~Lvv~  179 (322)
T PRK13943        146 -EFAPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP  179 (322)
T ss_pred             -ccCCccEEEECCchHHhHHHHHHhcCCC-CEEEEE
Confidence             1137999998887655566788999996 987763

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.66  E-value=0.0011  Score=51.68  Aligned_cols=101  Identities=20%  Similarity=0.192  Sum_probs=63.8

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCCCcee-eCCCCCCCccHHHHHHhhhCCCC
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFGMTDF-INPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      ...++++++||.+|+|+-+ .+..+++.. +..+|++++.++.+    +..+...+ .+..+   ....+.+.+..+..+
T Consensus        27 ~~~i~~g~~VLDiG~GtG~-~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~---~~~~~~l~~~~~~~~   98 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGG-WSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTD---EEVLNKIRERVGDDK   98 (188)
T ss_pred             hcccCCCCEEEEecCCCCH-HHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCC---hhHHHHHHHHhCCCC
Confidence            4557899999999998744 455555543 44489999988754    11233322 13322   344445555555558


Q ss_pred             ccEEEE-cc----CC------------hhHHHHHHHHcccCCcEEEEEc
Q 024295          157 VDYCFE-CT----GV------------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       157 ~d~v~d-~~----g~------------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +|+|+. ..    |.            ...+..+.+.++++ |+++...
T Consensus        99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lvi~~  146 (188)
T TIGR00438        99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK-GNFVVKV  146 (188)
T ss_pred             ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC-CEEEEEE
Confidence            999994 21    21            24677889999996 9998754

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=97.65  E-value=0.00025  Score=50.04  Aligned_cols=93  Identities=24%  Similarity=0.301  Sum_probs=62.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHH-cCCCeEEEEcCCcchHHHHHhC----CC-ceeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARM-HGAAKIIGIDKNPWKKEKGKAF----GM-TDFINPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~-~g~~~v~~~~~~~~~~~~~~~~----g~-~~v~~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      |+.+||-+|+|. |..+..+++. .+. +|++++.+++..+.+++.    +. +.+- ...   .++ .  .......+|
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~-~~~---~d~-~--~~~~~~~~~   71 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRIT-FVQ---GDA-E--FDPDFLEPF   71 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEE-EEE---SCC-H--GGTTTSSCE
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeE-EEE---Ccc-c--cCcccCCCC
Confidence            678999999987 8888899985 567 999999999888887652    21 1111 111   222 1  112223379


Q ss_pred             cEEEEcc-CC---hh------HHHHHHHHcccCCcEEEE
Q 024295          158 DYCFECT-GV---PS------LLSEALETTKVGKGKVIV  186 (269)
Q Consensus       158 d~v~d~~-g~---~~------~~~~~~~~l~~~~G~~v~  186 (269)
                      |+|+... ..   ..      .++.+.+.+++| |+++.
T Consensus        72 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~lvi  109 (112)
T PF12847_consen   72 DLVICSGFTLHFLLPLDERRRVLERIRRLLKPG-GRLVI  109 (112)
T ss_dssp             EEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred             CEEEECCCccccccchhHHHHHHHHHHHhcCCC-cEEEE
Confidence            9998765 21   11      378889999996 98875

...

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.63  E-value=0.00083  Score=55.55  Aligned_cols=151  Identities=22%  Similarity=0.323  Sum_probs=86.9

Q ss_pred             eeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHH
Q 024295           23 MSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVD  102 (269)
Q Consensus        23 ~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~  102 (269)
                      .+. |++.+-..   +|.+|..-.....+++.+.+.+..+    ....|++..=.....++++.+||-+|+|+ |.+++.
T Consensus       109 ~ri-g~~f~I~P---sw~~~~~~~~~~~i~lDPGlAFGTG----~HpTT~lcL~~Le~~~~~g~~vlDvGcGS-GILaIA  179 (300)
T COG2264         109 VRI-GERFVIVP---SWREYPEPSDELNIELDPGLAFGTG----THPTTSLCLEALEKLLKKGKTVLDVGCGS-GILAIA  179 (300)
T ss_pred             EEe-eeeEEECC---CCccCCCCCCceEEEEccccccCCC----CChhHHHHHHHHHHhhcCCCEEEEecCCh-hHHHHH
Confidence            444 55543222   3555433323556777776665433    34444443211223456999999999976 777776


Q ss_pred             HHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChh---HHHHHHH
Q 024295          103 GARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS---LLSEALE  175 (269)
Q Consensus       103 la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~---~~~~~~~  175 (269)
                      .+| +|+++|+++|.++-..+.+++    -+.........   ....+   ...+ ..||+|+-.+=...   ....+..
T Consensus       180 a~k-LGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~---~~~~~---~~~~-~~~DvIVANILA~vl~~La~~~~~  251 (300)
T COG2264         180 AAK-LGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKG---FLLLE---VPEN-GPFDVIVANILAEVLVELAPDIKR  251 (300)
T ss_pred             HHH-cCCceEEEecCCHHHHHHHHHHHHHcCCchhhhccc---ccchh---hccc-CcccEEEehhhHHHHHHHHHHHHH
Confidence            665 588799999988765555544    23321110110   11111   1112 38999986663322   3567778


Q ss_pred             HcccCCcEEEEEccCC
Q 024295          176 TTKVGKGKVIVIGVGV  191 (269)
Q Consensus       176 ~l~~~~G~~v~~g~~~  191 (269)
                      .++++ |++++.|...
T Consensus       252 ~lkpg-g~lIlSGIl~  266 (300)
T COG2264         252 LLKPG-GRLILSGILE  266 (300)
T ss_pred             HcCCC-ceEEEEeehH
Confidence            99996 9999998665

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.62  E-value=0.0016  Score=53.06  Aligned_cols=80  Identities=18%  Similarity=0.251  Sum_probs=56.5

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C----CCc-ee--eCCCCCCCccHHHHHHh-hh
Q 024295           83 EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F----GMT-DF--INPDDEPNKSISELVKG-IT  152 (269)
Q Consensus        83 ~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~----g~~-~v--~~~~~~~~~~~~~~i~~-~~  152 (269)
                      ..+.++||+|+ +++|...+..+...|+ +++.+.|++++++.+.+ +    |.. .+  +|..+   .+-.+.+.+ +.
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~---~~~~~~l~~~l~   79 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLSD---PEALERLEDELK   79 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCC---hhHHHHHHHHHH
Confidence            35789999997 8999999988888999 99999999998887643 3    221 12  23333   333334333 32


Q ss_pred             -CCCCccEEEEccCC
Q 024295          153 -HGMGVDYCFECTGV  166 (269)
Q Consensus       153 -~~~~~d~v~d~~g~  166 (269)
                       .+..+|+.++++|.
T Consensus        80 ~~~~~IdvLVNNAG~   94 (265)
T COG0300          80 ERGGPIDVLVNNAGF   94 (265)
T ss_pred             hcCCcccEEEECCCc
Confidence             22489999999985

>PRK04148 hypothetical protein; Provisional

Probab=97.58  E-value=0.00062  Score=49.43  Aligned_cols=86  Identities=23%  Similarity=0.286  Sum_probs=57.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      .++.+++++|.| .|...+..+...|. .|+++|.+++..+.+++.+...+.+.-.  ..++     ++..  ++|+++.
T Consensus        15 ~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf--~p~~-----~~y~--~a~liys   83 (134)
T PRK04148         15 GKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDLF--NPNL-----EIYK--NAKLIYS   83 (134)
T ss_pred             ccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcCC--CCCH-----HHHh--cCCEEEE
Confidence            356789999999 78755656667898 9999999999999898887654443221  0111     1121  7888887


Q ss_pred             ccCChhHHHHHHHHccc
Q 024295          163 CTGVPSLLSEALETTKV  179 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~  179 (269)
                      .-..+.....+++..+.
T Consensus        84 irpp~el~~~~~~la~~  100 (134)
T PRK04148         84 IRPPRDLQPFILELAKK  100 (134)
T ss_pred             eCCCHHHHHHHHHHHHH
Confidence            77665454445554444

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.58  E-value=0.00095  Score=51.93  Aligned_cols=106  Identities=16%  Similarity=0.226  Sum_probs=71.7

Q ss_pred             CCCeEEEEcC--ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCC-ceeeCCCC-CCCccHHHHHHhhhCCCCcc
Q 024295           84 KGSSVAVLGL--GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGM-TDFINPDD-EPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        84 ~~~~vlI~G~--g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~-~~v~~~~~-~~~~~~~~~i~~~~~~~~~d  158 (269)
                      ..+.|||+|+  |++|.+...=....|+ .|+++.|+-+.++.+. ++|. ..-+|-.+ .....+..++++..+| +.|
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~G-kld   83 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDG-KLD   83 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCC-ceE
Confidence            3477999984  8999998888888899 9999999999888876 5663 22333322 0122344556666566 899


Q ss_pred             EEEEccCChh-------------------------HHHHH-HHHcccCCcEEEEEccCCC
Q 024295          159 YCFECTGVPS-------------------------LLSEA-LETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       159 ~v~d~~g~~~-------------------------~~~~~-~~~l~~~~G~~v~~g~~~~  192 (269)
                      +.++.+|.+.                         ..+.. -.+++. +|++|.+|...+
T Consensus        84 ~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~lika-KGtIVnvgSl~~  142 (289)
T KOG1209|consen   84 LLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKA-KGTIVNVGSLAG  142 (289)
T ss_pred             EEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHc-cceEEEecceeE
Confidence            9999887622                         01111 124456 599999997664

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.58  E-value=0.0008  Score=53.21  Aligned_cols=101  Identities=14%  Similarity=0.120  Sum_probs=67.2

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSISEL  147 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~  147 (269)
                      +.+...++++++||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++    .+..   .++..+      ..+.
T Consensus        64 ~~~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d------~~~~  136 (205)
T PRK13944         64 MCELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGD------GKRG  136 (205)
T ss_pred             HHHhcCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECC------cccC
Confidence            34566788999999999986 888888888765 2389999999876665543    4422   222221      1111


Q ss_pred             HHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295          148 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       148 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      +   .....||+|+-+.........+++.|++| |+++..
T Consensus       137 ~---~~~~~fD~Ii~~~~~~~~~~~l~~~L~~g-G~lvi~  172 (205)
T PRK13944        137 L---EKHAPFDAIIVTAAASTIPSALVRQLKDG-GVLVIP  172 (205)
T ss_pred             C---ccCCCccEEEEccCcchhhHHHHHhcCcC-cEEEEE
Confidence            1   11238999886655444557888999997 998763

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.57  E-value=8.1e-05  Score=61.38  Aligned_cols=98  Identities=20%  Similarity=0.319  Sum_probs=62.5

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSISELV  148 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i  148 (269)
                      +.+++++++|++||-+|+|- |..+..+++..|+ +|++++.+++..+.+++    .|..   .+..      .++    
T Consensus        54 ~~~~~~l~~G~~vLDiGcGw-G~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~------~D~----  121 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIGCGW-GGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRL------QDY----  121 (273)
T ss_dssp             HHTTTT--TT-EEEEES-TT-SHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEE------S-G----
T ss_pred             HHHHhCCCCCCEEEEeCCCc-cHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE------eec----
Confidence            45788999999999999984 8888899999999 99999999998888754    4422   1211      111    


Q ss_pred             HhhhCCCCccEEE-----EccCC---hhHHHHHHHHcccCCcEEEEEc
Q 024295          149 KGITHGMGVDYCF-----ECTGV---PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       149 ~~~~~~~~~d~v~-----d~~g~---~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +++. + .||.|+     +.+|.   +..+..+.+.|+|| |++++-.
T Consensus       122 ~~~~-~-~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg-G~~~lq~  166 (273)
T PF02353_consen  122 RDLP-G-KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG-GRLVLQT  166 (273)
T ss_dssp             GG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT-EEEEEEE
T ss_pred             cccC-C-CCCEEEEEechhhcChhHHHHHHHHHHHhcCCC-cEEEEEe
Confidence            2222 2 899874     34443   34588899999997 9987543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.53  E-value=0.00056  Score=52.90  Aligned_cols=78  Identities=15%  Similarity=0.188  Sum_probs=56.3

Q ss_pred             CCeEEEEc-CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC---ceeeCCCCCCCccHHHHHHhhh--CCCCcc
Q 024295           85 GSSVAVLG-LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM---TDFINPDDEPNKSISELVKGIT--HGMGVD  158 (269)
Q Consensus        85 ~~~vlI~G-~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~i~~~~--~~~~~d  158 (269)
                      |.+|||+| ++++|++.++-...+|- +|+...|++++++.++..-.   ..+.|-.+   .+..+++.++.  +-+..+
T Consensus         5 gnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d---~~~~~~lvewLkk~~P~lN   80 (245)
T COG3967           5 GNTILITGGASGIGLALAKRFLELGN-TVIICGRNEERLAEAKAENPEIHTEVCDVAD---RDSRRELVEWLKKEYPNLN   80 (245)
T ss_pred             CcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHHHHHHHhcCcchheeeecccc---hhhHHHHHHHHHhhCCchh
Confidence            68999997 58999999999999999 99999999999999877432   33444443   44333333332  124688


Q ss_pred             EEEEccCC
Q 024295          159 YCFECTGV  166 (269)
Q Consensus       159 ~v~d~~g~  166 (269)
                      ++++++|-
T Consensus        81 vliNNAGI   88 (245)
T COG3967          81 VLINNAGI   88 (245)
T ss_pred             eeeecccc
Confidence            99988863

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=97.52  E-value=0.0017  Score=54.04  Aligned_cols=134  Identities=23%  Similarity=0.337  Sum_probs=74.6

Q ss_pred             ccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHh-cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcC
Q 024295           39 WSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKE-AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDK  117 (269)
Q Consensus        39 ~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~-~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~  117 (269)
                      |.++-.-+....+.+++.+.+..+.    .-.|.. ||... .-.+++++||-+|+|+ |.+++..++ +|+++|+++|.
T Consensus       120 w~~~~~~~~~~~I~idPg~AFGTG~----H~TT~l-cl~~l~~~~~~g~~vLDvG~GS-GILaiaA~k-lGA~~v~a~Di  192 (295)
T PF06325_consen  120 WEEYPEPPDEIVIEIDPGMAFGTGH----HPTTRL-CLELLEKYVKPGKRVLDVGCGS-GILAIAAAK-LGAKKVVAIDI  192 (295)
T ss_dssp             T----SSTTSEEEEESTTSSS-SSH----CHHHHH-HHHHHHHHSSTTSEEEEES-TT-SHHHHHHHH-TTBSEEEEEES
T ss_pred             CcccCCCCCcEEEEECCCCcccCCC----CHHHHH-HHHHHHHhccCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEecC
Confidence            4444222344556666666655553    222222 22211 1256889999999876 777776666 49889999999


Q ss_pred             CcchHHHHHh----CCC-cee-eCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhH---HHHHHHHcccCCcEEEEEc
Q 024295          118 NPWKKEKGKA----FGM-TDF-INPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL---LSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       118 ~~~~~~~~~~----~g~-~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~---~~~~~~~l~~~~G~~v~~g  188 (269)
                      ++...+.+++    -|. +.+ +...    .+.       .. ..||+|+-..-.+..   ...+.+.++++ |.+++.|
T Consensus       193 Dp~Av~~a~~N~~~N~~~~~~~v~~~----~~~-------~~-~~~dlvvANI~~~vL~~l~~~~~~~l~~~-G~lIlSG  259 (295)
T PF06325_consen  193 DPLAVEAARENAELNGVEDRIEVSLS----EDL-------VE-GKFDLVVANILADVLLELAPDIASLLKPG-GYLILSG  259 (295)
T ss_dssp             SCHHHHHHHHHHHHTT-TTCEEESCT----SCT-------CC-S-EEEEEEES-HHHHHHHHHHCHHHEEEE-EEEEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCeeEEEEEe----ccc-------cc-ccCCEEEECCCHHHHHHHHHHHHHhhCCC-CEEEEcc
Confidence            8876665544    232 122 2111    111       11 389999976654322   34556678896 9999998


Q ss_pred             cCCC
Q 024295          189 VGVD  192 (269)
Q Consensus       189 ~~~~  192 (269)
                      ....
T Consensus       260 Il~~  263 (295)
T PF06325_consen  260 ILEE  263 (295)
T ss_dssp             EEGG
T ss_pred             ccHH
Confidence            7653

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.49  E-value=0.0025  Score=51.33  Aligned_cols=104  Identities=18%  Similarity=0.261  Sum_probs=66.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hh---CCCceee--CCCCCCCccHHHHHHhhhC-CC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KA---FGMTDFI--NPDDEPNKSISELVKGITH-GM  155 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~---~g~~~v~--~~~~~~~~~~~~~i~~~~~-~~  155 (269)
                      +++++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+ ++   .+..+.+  |..+  .....+.+.+... -.
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~   80 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSS--TESARNVIEKAAKVLN   80 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCC--HHHHHHHHHHHHHHhC
Confidence            4689999986 8999999999999999 999999988776655 22   2222222  2222  1223332322211 12


Q ss_pred             CccEEEEccCChh-----------------------HHHHHHHHcccCCcEEEEEccCC
Q 024295          156 GVDYCFECTGVPS-----------------------LLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       156 ~~d~v~d~~g~~~-----------------------~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      ++|.++.+++...                       .++..+..++++ |+++.++...
T Consensus        81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~ss~~  138 (238)
T PRK05786         81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEG-SSIVLVSSMS  138 (238)
T ss_pred             CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CEEEEEecch
Confidence            6899998886421                       134555566775 8898887653

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.47  E-value=0.00064  Score=54.21  Aligned_cols=101  Identities=19%  Similarity=0.255  Sum_probs=66.7

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCce--eeCCCCCCCccHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTD--FINPDDEPNKSISELV  148 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i  148 (269)
                      +.+...++++++||-+|+|. |..+..+++..+. .+|++++.+++..+.+++    .|.+.  ++..      +..+. 
T Consensus        69 ~~~~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~------d~~~~-  140 (215)
T TIGR00080        69 MTELLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVG------DGTQG-  140 (215)
T ss_pred             HHHHhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEEC------CcccC-
Confidence            44667789999999999886 8888888887653 269999999887776654    44322  2211      11111 


Q ss_pred             HhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295          149 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                        +.....||+|+-....+.....+.+.+++| |+++..
T Consensus       141 --~~~~~~fD~Ii~~~~~~~~~~~~~~~L~~g-G~lv~~  176 (215)
T TIGR00080       141 --WEPLAPYDRIYVTAAGPKIPEALIDQLKEG-GILVMP  176 (215)
T ss_pred             --CcccCCCCEEEEcCCcccccHHHHHhcCcC-cEEEEE
Confidence              111237998875443333556788999996 998764

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.45  E-value=0.0011  Score=51.11  Aligned_cols=91  Identities=24%  Similarity=0.443  Sum_probs=63.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      -.+++|.|+|.|.+|...++.++..|. +|++.+++..........+...         .++.+.+.      ..|+|+.
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~~---------~~l~ell~------~aDiv~~   97 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGVEY---------VSLDELLA------QADIVSL   97 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTEEE---------SSHHHHHH------H-SEEEE
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhccccccee---------eehhhhcc------hhhhhhh
Confidence            368999999999999999999999999 9999998876665444554321         23433333      4688888


Q ss_pred             ccCChh-----HHHHHHHHcccCCcEEEEEccC
Q 024295          163 CTGVPS-----LLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       163 ~~g~~~-----~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      +....+     .-.+.+..++++ ..+|.++..
T Consensus        98 ~~plt~~T~~li~~~~l~~mk~g-a~lvN~aRG  129 (178)
T PF02826_consen   98 HLPLTPETRGLINAEFLAKMKPG-AVLVNVARG  129 (178)
T ss_dssp             -SSSSTTTTTSBSHHHHHTSTTT-EEEEESSSG
T ss_pred             hhccccccceeeeeeeeeccccc-eEEEeccch
Confidence            775311     134677888886 888887643

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.43  E-value=0.0035  Score=44.83  Aligned_cols=101  Identities=17%  Similarity=0.312  Sum_probs=67.1

Q ss_pred             HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHHh
Q 024295           77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVKG  150 (269)
Q Consensus        77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~  150 (269)
                      .....+.++++||-+|+|. |..+..+++..+..+|++++.+++..+.+++    ++..  .++..+-   ..   ....
T Consensus        12 ~~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~---~~---~~~~   84 (124)
T TIGR02469        12 LSKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA---PE---ALED   84 (124)
T ss_pred             HHHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc---cc---cChh
Confidence            3445667788999999987 9899999988754599999999887777643    3322  2222111   11   0111


Q ss_pred             hhCCCCccEEEEccCC---hhHHHHHHHHcccCCcEEEEE
Q 024295          151 ITHGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       151 ~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~  187 (269)
                       .. ..+|+|+-....   ...++.+.+.++++ |+++..
T Consensus        85 -~~-~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~li~~  121 (124)
T TIGR02469        85 -SL-PEPDRVFIGGSGGLLQEILEAIWRRLRPG-GRIVLN  121 (124)
T ss_pred             -hc-CCCCEEEECCcchhHHHHHHHHHHHcCCC-CEEEEE
Confidence             11 279999865432   23578899999996 998764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.42  E-value=0.0011  Score=52.71  Aligned_cols=96  Identities=25%  Similarity=0.277  Sum_probs=66.0

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce--eeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD--FINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      -++.+||-+|+|+ |+++..+|+. |+ +|+++|.+++-.+.++......  -+|+..    ...+.+..  .+..||+|
T Consensus        58 l~g~~vLDvGCGg-G~Lse~mAr~-Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~----~~~edl~~--~~~~FDvV  128 (243)
T COG2227          58 LPGLRVLDVGCGG-GILSEPLARL-GA-SVTGIDASEKPIEVAKLHALESGVNIDYRQ----ATVEDLAS--AGGQFDVV  128 (243)
T ss_pred             CCCCeEEEecCCc-cHhhHHHHHC-CC-eeEEecCChHHHHHHHHhhhhccccccchh----hhHHHHHh--cCCCccEE
Confidence            4789999999976 7777777764 78 9999999999888887543221  245653    23333332  12489999


Q ss_pred             E-----EccCChh-HHHHHHHHcccCCcEEEEEc
Q 024295          161 F-----ECTGVPS-LLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       161 ~-----d~~g~~~-~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +     +-+..+. .+..+.++++|+ |.++..-
T Consensus       129 ~cmEVlEHv~dp~~~~~~c~~lvkP~-G~lf~ST  161 (243)
T COG2227         129 TCMEVLEHVPDPESFLRACAKLVKPG-GILFLST  161 (243)
T ss_pred             EEhhHHHccCCHHHHHHHHHHHcCCC-cEEEEec
Confidence            5     3444443 467899999996 9887653

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.41  E-value=0.0012  Score=51.22  Aligned_cols=99  Identities=17%  Similarity=0.189  Sum_probs=64.5

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhCCC
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      ..++++.+||-+|+|+ |..+..+++.....+|++++.+++..+.+++    .+.+. +....   .+..+ +   ....
T Consensus        41 ~~l~~g~~VLDiGcGt-G~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~---~d~~~-~---~~~~  111 (187)
T PRK00107         41 PYLPGGERVLDVGSGA-GFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVH---GRAEE-F---GQEE  111 (187)
T ss_pred             hhcCCCCeEEEEcCCC-CHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEe---ccHhh-C---CCCC
Confidence            3455689999999876 7777777775543499999999887776654    44332 21121   22222 1   1133


Q ss_pred             CccEEEEcc-CC-hhHHHHHHHHcccCCcEEEEEc
Q 024295          156 GVDYCFECT-GV-PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       156 ~~d~v~d~~-g~-~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .||+|+-.. .. +..+..+.+.+++| |+++.+-
T Consensus       112 ~fDlV~~~~~~~~~~~l~~~~~~LkpG-G~lv~~~  145 (187)
T PRK00107        112 KFDVVTSRAVASLSDLVELCLPLLKPG-GRFLALK  145 (187)
T ss_pred             CccEEEEccccCHHHHHHHHHHhcCCC-eEEEEEe
Confidence            799998533 22 34577889999996 9998874

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=97.41  E-value=0.016  Score=48.38  Aligned_cols=97  Identities=12%  Similarity=0.182  Sum_probs=68.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHH-HcCCCeEEEEcCCcchHHHHHhCCC-ceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGAR-MHGAAKIIGIDKNPWKKEKGKAFGM-TDFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~-~~g~~~v~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      ..+.|+|.++ +=+++.++.+++ ..+.-++++++ |+...+..+.+|. |.++.|++         +..+... .--++
T Consensus       135 ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglT-S~~N~~Fve~lg~Yd~V~~Yd~---------i~~l~~~-~~~v~  203 (314)
T PF11017_consen  135 GAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLT-SARNVAFVESLGCYDEVLTYDD---------IDSLDAP-QPVVI  203 (314)
T ss_pred             CccEEEEeccchHHHHHHHHHhhccCCCceEEEEe-cCcchhhhhccCCceEEeehhh---------hhhccCC-CCEEE
Confidence            3467777776 668888888877 55555899998 6677778999996 77888864         3333222 45678


Q ss_pred             EEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          161 FECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       161 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      +|..|.......+.+.+....-..+.+|...
T Consensus       204 VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~th  234 (314)
T PF11017_consen  204 VDFAGNGEVLAALHEHLGDNLVYSCLVGATH  234 (314)
T ss_pred             EECCCCHHHHHHHHHHHhhhhhEEEEEEccC
Confidence            8999998787788888877424566777554

>PRK07402 precorrin-6B methylase; Provisional

Probab=97.39  E-value=0.0057  Score=47.97  Aligned_cols=103  Identities=20%  Similarity=0.330  Sum_probs=64.9

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCce--eeCCCCCCCccHHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTD--FINPDDEPNKSISELVK  149 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i~  149 (269)
                      +.....++++++||-+|+|. |..+..+++.....+|++++.+++..+.+++    ++...  ++.      .+..+.+.
T Consensus        32 l~~~l~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~------~d~~~~~~  104 (196)
T PRK07402         32 LISQLRLEPDSVLWDIGAGT-GTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIE------GSAPECLA  104 (196)
T ss_pred             HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEE------CchHHHHh
Confidence            34556778899999999875 6677777776533499999999988777654    44322  222      22222222


Q ss_pred             hhhCCCCccE-EEEccCC-hhHHHHHHHHcccCCcEEEEEc
Q 024295          150 GITHGMGVDY-CFECTGV-PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       150 ~~~~~~~~d~-v~d~~g~-~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .+..  .+|. +++.... ...++.+.+.+++| |+++...
T Consensus       105 ~~~~--~~d~v~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~  142 (196)
T PRK07402        105 QLAP--APDRVCIEGGRPIKEILQAVWQYLKPG-GRLVATA  142 (196)
T ss_pred             hCCC--CCCEEEEECCcCHHHHHHHHHHhcCCC-eEEEEEe
Confidence            2221  2344 4443222 34678889999996 9988774

>PRK14967 putative methyltransferase; Provisional

Probab=97.37  E-value=0.011  Score=47.42  Aligned_cols=98  Identities=19%  Similarity=0.203  Sum_probs=64.0

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-eeeCCCCCCCccHHHHHHhhh
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      ....++++++||.+|+|. |..+..+++. +..++++++.+++..+.+++    .+.. .+++      .++.+.+    
T Consensus        30 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~------~d~~~~~----   97 (223)
T PRK14967         30 AAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRR------GDWARAV----   97 (223)
T ss_pred             HhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEE------Cchhhhc----
Confidence            345677889999999987 8888888875 55599999999887776554    3332 2222      2232211    


Q ss_pred             CCCCccEEEEccCC---------------------------hhHHHHHHHHcccCCcEEEEEc
Q 024295          153 HGMGVDYCFECTGV---------------------------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       153 ~~~~~d~v~d~~g~---------------------------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ....||+|+-..+.                           ...+..+.+.++++ |+++.+-
T Consensus        98 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g-G~l~~~~  159 (223)
T PRK14967         98 EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG-GSLLLVQ  159 (223)
T ss_pred             cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC-cEEEEEE
Confidence            22379999864210                           11245677899996 9988753

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.37  E-value=0.0025  Score=54.85  Aligned_cols=96  Identities=16%  Similarity=0.140  Sum_probs=65.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC---C-ceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG---M-TDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g---~-~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      .+|||+|+|.+|+.+++.+.+.+..+|++.+|+.++.+.+....   . ...+|-.+  .+...+.+    .  ++|+||
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d--~~al~~li----~--~~d~VI   73 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAAD--VDALVALI----K--DFDLVI   73 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccC--hHHHHHHH----h--cCCEEE
Confidence            47999999999999999988888449999999999999887653   2 23444433  12222222    2  559999


Q ss_pred             EccCChhHHHHHH-HHcccCCcEEEEEccCC
Q 024295          162 ECTGVPSLLSEAL-ETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       162 d~~g~~~~~~~~~-~~l~~~~G~~v~~g~~~  191 (269)
                      ++.+..-.. .++ .+++.| =.++......
T Consensus        74 n~~p~~~~~-~i~ka~i~~g-v~yvDts~~~  102 (389)
T COG1748          74 NAAPPFVDL-TILKACIKTG-VDYVDTSYYE  102 (389)
T ss_pred             EeCCchhhH-HHHHHHHHhC-CCEEEcccCC
Confidence            999876443 444 455553 4566555443

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.36  E-value=0.0014  Score=52.31  Aligned_cols=80  Identities=15%  Similarity=0.239  Sum_probs=57.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCC----ceeeCCCCCCCccHHHHHHhhhCC-CC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGM----TDFINPDDEPNKSISELVKGITHG-MG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~----~~v~~~~~~~~~~~~~~i~~~~~~-~~  156 (269)
                      +++.++|+|+ +++|.+.++.+...|+ +|+.+.|+.++++.+. +++.    ...+|-.+  .....+.+..+... ..
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD--~~~~~~~i~~~~~~~g~   81 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGAGAALALALDVTD--RAAVEAAIEALPEEFGR   81 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhccCceEEEeeccCC--HHHHHHHHHHHHHhhCc
Confidence            4577899997 8999999999999999 9999999999988864 4772    22344333  12333344433322 26


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|+.++..|.
T Consensus        82 iDiLvNNAGl   91 (246)
T COG4221          82 IDILVNNAGL   91 (246)
T ss_pred             ccEEEecCCC
Confidence            9999999875

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.33  E-value=0.00084  Score=51.32  Aligned_cols=102  Identities=21%  Similarity=0.229  Sum_probs=66.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCC-CCC-C------------CccHHHHHHh
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINP-DDE-P------------NKSISELVKG  150 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~-~~~-~------------~~~~~~~i~~  150 (269)
                      ..+|+|+|+|.+|+.|+.+++.+|+ +++..+..+++.+..+..+...+... .+. .            +......+.+
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~   98 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE   98 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence            4789999999999999999999999 99999998888888888776543321 100 0            1222233333


Q ss_pred             hhCCCCccEEEEcc--CC-hh---HHHHHHHHcccCCcEEEEEccC
Q 024295          151 ITHGMGVDYCFECT--GV-PS---LLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       151 ~~~~~~~d~v~d~~--g~-~~---~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      ...  .+|+++.+.  ++ ..   ..++.++.++++ ..++.+..-
T Consensus        99 ~i~--~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~g-svIvDis~D  141 (168)
T PF01262_consen   99 FIA--PADIVIGNGLYWGKRAPRLVTEEMVKSMKPG-SVIVDISCD  141 (168)
T ss_dssp             HHH--H-SEEEEHHHBTTSS---SBEHHHHHTSSTT-EEEEETTGG
T ss_pred             HHh--hCcEEeeecccCCCCCCEEEEhHHhhccCCC-ceEEEEEec
Confidence            222  578888644  22 11   146778889995 888887643

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.29  E-value=0.0017  Score=53.50  Aligned_cols=97  Identities=25%  Similarity=0.300  Sum_probs=72.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CCc-eeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GMT-DFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      ..+|.|+|.|.+|.-++.+|..+|+ +|+..+.+.+|++.+..+ +-. +.+-+.   +.++.+.+.      +.|+++.
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~~st---~~~iee~v~------~aDlvIg  237 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTLYST---PSNIEEAVK------KADLVIG  237 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEEEcC---HHHHHHHhh------hccEEEE
Confidence            4568899999999999999999999 999999999999988874 433 222222   244544443      6899998


Q ss_pred             cc---CC--hh-HHHHHHHHcccCCcEEEEEccCCC
Q 024295          163 CT---GV--PS-LLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       163 ~~---g~--~~-~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                      ++   |.  |. ..++.++.+++| +.++.+..-.+
T Consensus       238 aVLIpgakaPkLvt~e~vk~MkpG-sVivDVAiDqG  272 (371)
T COG0686         238 AVLIPGAKAPKLVTREMVKQMKPG-SVIVDVAIDQG  272 (371)
T ss_pred             EEEecCCCCceehhHHHHHhcCCC-cEEEEEEEcCC
Confidence            87   22  11 367889999997 99998875443

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=97.26  E-value=0.0042  Score=49.94  Aligned_cols=105  Identities=20%  Similarity=0.220  Sum_probs=73.9

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHhhhC
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      ......+|.+||-+|+|+ |-.|..+++..|..+|+++|.++..++.+++.    |... +....   .+. +++.  .+
T Consensus        45 ~~~~~~~g~~vLDva~GT-Gd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~---~dA-e~LP--f~  116 (238)
T COG2226          45 SLLGIKPGDKVLDVACGT-GDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVV---GDA-ENLP--FP  116 (238)
T ss_pred             HhhCCCCCCEEEEecCCc-cHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEE---ech-hhCC--CC
Confidence            345556899999999886 99999999999866999999999988888763    2221 11111   111 1111  23


Q ss_pred             CCCccEEEEccCC------hhHHHHHHHHcccCCcEEEEEccCC
Q 024295          154 GMGVDYCFECTGV------PSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       154 ~~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      +..||+|.-+.|-      +..+.++.+.++|| |+++.+....
T Consensus       117 D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg-G~~~vle~~~  159 (238)
T COG2226         117 DNSFDAVTISFGLRNVTDIDKALKEMYRVLKPG-GRLLVLEFSK  159 (238)
T ss_pred             CCccCEEEeeehhhcCCCHHHHHHHHHHhhcCC-eEEEEEEcCC
Confidence            4489988655542      44689999999997 9988887655

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=97.26  E-value=0.00067  Score=53.49  Aligned_cols=105  Identities=21%  Similarity=0.267  Sum_probs=69.0

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhC
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      ..+..+.++||-+|++. |+.++.+|+.+.. .+|+.++.+++..+.+++    .|...-+....   .+..+.+.++.+
T Consensus        40 l~~~~~~k~vLEIGt~~-GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~---gda~~~l~~l~~  115 (205)
T PF01596_consen   40 LVRLTRPKRVLEIGTFT-GYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIE---GDALEVLPELAN  115 (205)
T ss_dssp             HHHHHT-SEEEEESTTT-SHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEE---S-HHHHHHHHHH
T ss_pred             HHHhcCCceEEEecccc-ccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEE---eccHhhHHHHHh
Confidence            34445668999999865 9999999997642 399999999998888865    45432222222   445555555432


Q ss_pred             C---CCccEEE-EccC--ChhHHHHHHHHcccCCcEEEEEc
Q 024295          154 G---MGVDYCF-ECTG--VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       154 ~---~~~d~v~-d~~g--~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .   ..||.|| |+.-  ....+..+++++++| |.++.=.
T Consensus       116 ~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~g-gvii~DN  155 (205)
T PF01596_consen  116 DGEEGQFDFVFIDADKRNYLEYFEKALPLLRPG-GVIIADN  155 (205)
T ss_dssp             TTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEE-EEEEEET
T ss_pred             ccCCCceeEEEEcccccchhhHHHHHhhhccCC-eEEEEcc
Confidence            2   2799996 5542  233577889999995 7776543

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=97.22  E-value=0.0031  Score=50.56  Aligned_cols=105  Identities=21%  Similarity=0.221  Sum_probs=74.2

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHh
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKG  150 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~  150 (269)
                      +....++.+|++|+-.|.|+ |.++..|++..|. .+|+..+..++..+.+++    +|....+....   .|    +++
T Consensus        86 I~~~~gi~pg~rVlEAGtGS-G~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~---~D----v~~  157 (256)
T COG2519          86 IVARLGISPGSRVLEAGTGS-GALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKL---GD----VRE  157 (256)
T ss_pred             HHHHcCCCCCCEEEEcccCc-hHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEe---cc----ccc
Confidence            34578999999999999887 8899999998876 499999999888887754    44332222221   22    223


Q ss_pred             hhCCCCccEEE-EccCChhHHHHHHHHcccCCcEEEEEcc
Q 024295          151 ITHGMGVDYCF-ECTGVPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       151 ~~~~~~~d~v~-d~~g~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      ...+..||.+| |--..-..++.+.+.|++| |.++.+..
T Consensus       158 ~~~~~~vDav~LDmp~PW~~le~~~~~Lkpg-g~~~~y~P  196 (256)
T COG2519         158 GIDEEDVDAVFLDLPDPWNVLEHVSDALKPG-GVVVVYSP  196 (256)
T ss_pred             cccccccCEEEEcCCChHHHHHHHHHHhCCC-cEEEEEcC
Confidence            22233899876 4433344688999999997 99998853

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.21  E-value=0.0033  Score=52.09  Aligned_cols=78  Identities=18%  Similarity=0.267  Sum_probs=54.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCcee-eCCCCCCCccHHHHHHhh---hCCCCcc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF-INPDDEPNKSISELVKGI---THGMGVD  158 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~---~~~~~~d  158 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+.+...+ .|..+  ..++.+.+.+.   .++ .+|
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d--~~~~~~~~~~~~~~~~g-~id   78 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAEGLEAFQLDYAE--PESIAALVAQVLELSGG-RLD   78 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCceEEEccCCC--HHHHHHHHHHHHHHcCC-Ccc
Confidence            3578999986 9999999998888899 99999999888877766554432 24332  12222223322   223 799


Q ss_pred             EEEEccC
Q 024295          159 YCFECTG  165 (269)
Q Consensus       159 ~v~d~~g  165 (269)
                      +++++.|
T Consensus        79 ~li~~Ag   85 (277)
T PRK05993         79 ALFNNGA   85 (277)
T ss_pred             EEEECCC
Confidence            9999876

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.19  E-value=0.0065  Score=46.81  Aligned_cols=94  Identities=20%  Similarity=0.257  Sum_probs=62.0

Q ss_pred             EEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295           88 VAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  166 (269)
Q Consensus        88 vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  166 (269)
                      |+|+|+ |.+|...++.+...|. +|+++.|++++.+.  ..+.+.+. .+-   .+. +.+.+...  ++|.||.++|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~--~~~~~~~~-~d~---~d~-~~~~~al~--~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED--SPGVEIIQ-GDL---FDP-DSVKAALK--GADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH--CTTEEEEE-SCT---TCH-HHHHHHHT--TSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc--ccccccce-eee---hhh-hhhhhhhh--hcchhhhhhhh
Confidence            689996 9999999999999998 99999999988776  33444332 211   222 22333222  79999999974


Q ss_pred             ----hhHHHHHHHHcccC-CcEEEEEccCC
Q 024295          167 ----PSLLSEALETTKVG-KGKVIVIGVGV  191 (269)
Q Consensus       167 ----~~~~~~~~~~l~~~-~G~~v~~g~~~  191 (269)
                          ......+++.++.. -.+++.++...
T Consensus        71 ~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   71 PPKDVDAAKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             TTTHHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred             hcccccccccccccccccccccceeeeccc
Confidence                22345556655542 13777776444

...

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=97.19  E-value=0.0021  Score=50.52  Aligned_cols=99  Identities=21%  Similarity=0.310  Sum_probs=62.7

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHhhhC
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      ......++.+||.+|+|. |..+..+++. |. +|+++|.+++..+.+++.    +... ++...   .++.    +...
T Consensus        24 ~~l~~~~~~~vLDiGcG~-G~~a~~La~~-g~-~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~---~d~~----~~~~   92 (197)
T PRK11207         24 EAVKVVKPGKTLDLGCGN-GRNSLYLAAN-GF-DVTAWDKNPMSIANLERIKAAENLDN-LHTAV---VDLN----NLTF   92 (197)
T ss_pred             HhcccCCCCcEEEECCCC-CHHHHHHHHC-CC-EEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEe---cChh----hCCc
Confidence            344556778999999987 8888888875 77 999999998777666542    2221 11111   1111    1111


Q ss_pred             CCCccEEEEccC----C----hhHHHHHHHHcccCCcEEEEEc
Q 024295          154 GMGVDYCFECTG----V----PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       154 ~~~~d~v~d~~g----~----~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ...||+|+....    .    ...+..+.+.+++| |.++.+.
T Consensus        93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~~~~~~  134 (197)
T PRK11207         93 DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG-GYNLIVA  134 (197)
T ss_pred             CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence            226999986532    1    23577888899997 9965543

>PRK08177 short chain dehydrogenase; Provisional

Probab=97.17  E-value=0.0033  Score=50.33  Aligned_cols=77  Identities=19%  Similarity=0.342  Sum_probs=51.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCcee--eCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF--INPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      ++++|+|+ |.+|...+..+...|+ +|+++++++++.+.+++++....  .|-.+  .+...+.+..+.. .++|+++.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~-~~id~vi~   77 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQALPGVHIEKLDMND--PASLDQLLQRLQG-QRFDLLFV   77 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhccccceEEcCCCC--HHHHHHHHHHhhc-CCCCEEEE
Confidence            46899986 9999998888888899 99999998877766655542222  23322  1223333333333 37999998


Q ss_pred             ccCC
Q 024295          163 CTGV  166 (269)
Q Consensus       163 ~~g~  166 (269)
                      ++|.
T Consensus        78 ~ag~   81 (225)
T PRK08177         78 NAGI   81 (225)
T ss_pred             cCcc
Confidence            8753

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=97.17  E-value=0.004  Score=50.27  Aligned_cols=105  Identities=19%  Similarity=0.183  Sum_probs=69.5

Q ss_pred             HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhh
Q 024295           77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      ....+..+.++||-+|+|. |..++.+++.++ ..+|++++.+++..+.+++    .|...-+....   .+..+.+.++
T Consensus        61 ~~l~~~~~~~~vLEiGt~~-G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~---gda~~~L~~l  136 (234)
T PLN02781         61 SMLVKIMNAKNTLEIGVFT-GYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQ---SDALSALDQL  136 (234)
T ss_pred             HHHHHHhCCCEEEEecCcc-cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---ccHHHHHHHH
Confidence            3456667789999999865 888888888764 3499999999988887765    34332222222   4444444444


Q ss_pred             hC---CCCccEEEEccC---ChhHHHHHHHHcccCCcEEEE
Q 024295          152 TH---GMGVDYCFECTG---VPSLLSEALETTKVGKGKVIV  186 (269)
Q Consensus       152 ~~---~~~~d~v~d~~g---~~~~~~~~~~~l~~~~G~~v~  186 (269)
                      ..   ...||+||--..   ....+..+++.+++| |.++.
T Consensus       137 ~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~G-G~ii~  176 (234)
T PLN02781        137 LNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVG-GIIAF  176 (234)
T ss_pred             HhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-eEEEE
Confidence            21   238999974332   234578889999996 88765

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.16  E-value=0.0072  Score=45.39  Aligned_cols=102  Identities=25%  Similarity=0.323  Sum_probs=64.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      .-.|++++|.|-|-+|...++.++.+|+ +|++++.++-+.-.+..-|.. +        ....+.+      ...|+++
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf~-v--------~~~~~a~------~~adi~v   83 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGFE-V--------MTLEEAL------RDADIFV   83 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-E-E--------E-HHHHT------TT-SEEE
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCcE-e--------cCHHHHH------hhCCEEE
Confidence            4478999999999999999999999999 999999988766666555543 2        1222222      1679999


Q ss_pred             EccCChhH-HHHHHHHcccCCcEEEEEccCCCccccchhHhhh
Q 024295          162 ECTGVPSL-LSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA  203 (269)
Q Consensus       162 d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~  203 (269)
                      -++|.... -.+-+..++.+ .-+...|..   +.+++...+.
T Consensus        84 taTG~~~vi~~e~~~~mkdg-ail~n~Gh~---d~Eid~~~L~  122 (162)
T PF00670_consen   84 TATGNKDVITGEHFRQMKDG-AILANAGHF---DVEIDVDALE  122 (162)
T ss_dssp             E-SSSSSSB-HHHHHHS-TT-EEEEESSSS---TTSBTHHHHH
T ss_pred             ECCCCccccCHHHHHHhcCC-eEEeccCcC---ceeEeecccc
Confidence            99997643 35778889985 555555543   3455554443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.14  E-value=0.0039  Score=54.58  Aligned_cols=98  Identities=13%  Similarity=0.066  Sum_probs=62.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      -.+.++||+|+|.+|.+++..+...|+++++++.|+.++.+.+. +++...++..         +.+.+...  .+|+||
T Consensus       179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~---------~~l~~~l~--~aDiVI  247 (414)
T PRK13940        179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYL---------SELPQLIK--KADIII  247 (414)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecH---------HHHHHHhc--cCCEEE
Confidence            36789999999999999999999999878999999987766554 4542222221         12222211  689999


Q ss_pred             EccCChhHHHHHHHHcccCCcEEEEEccCCC
Q 024295          162 ECTGVPSLLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                      .|++.+..+-. .+.++...=.++.++.|..
T Consensus       248 ~aT~a~~~vi~-~~~~~~~~~~~iDLavPRd  277 (414)
T PRK13940        248 AAVNVLEYIVT-CKYVGDKPRVFIDISIPQA  277 (414)
T ss_pred             ECcCCCCeeEC-HHHhCCCCeEEEEeCCCCC
Confidence            99988643211 1122221024566666553

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.004  Score=51.43  Aligned_cols=78  Identities=18%  Similarity=0.290  Sum_probs=53.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCcee-eCCCCCCCccHHHHHHhhh-CCCCccEEEE
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF-INPDDEPNKSISELVKGIT-HGMGVDYCFE  162 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~-~~~~~d~v~d  162 (269)
                      +++||+|+ |.+|...++.+...|+ +|+++++++++.+.+...+...+ .|..+  +..+.+.+.... ...++|++++
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~id~vi~   78 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAAAGFTAVQLDVND--GAALARLAEELEAEHGGLDVLIN   78 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeEEEeeCCC--HHHHHHHHHHHHHhcCCCCEEEE
Confidence            47899986 8999999999888899 99999998877776665554332 34433  123333333321 1237999999


Q ss_pred             ccCC
Q 024295          163 CTGV  166 (269)
Q Consensus       163 ~~g~  166 (269)
                      +.|.
T Consensus        79 ~ag~   82 (274)
T PRK05693         79 NAGY   82 (274)
T ss_pred             CCCC
Confidence            9973

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=97.11  E-value=0.0056  Score=49.71  Aligned_cols=104  Identities=17%  Similarity=0.204  Sum_probs=69.9

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhh
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      ...+..+.++||-+|.+ +|..++.+++.++. .+++.++.+++..+.+++    .|..+-+....   .+..+.+.++.
T Consensus        73 ~l~~~~~ak~iLEiGT~-~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~---G~a~e~L~~l~  148 (247)
T PLN02589         73 MLLKLINAKNTMEIGVY-TGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFRE---GPALPVLDQMI  148 (247)
T ss_pred             HHHHHhCCCEEEEEeCh-hhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe---ccHHHHHHHHH
Confidence            34455567899999975 48888999987642 289999999988887755    45333333333   55555565543


Q ss_pred             C----CCCccEEE-Ecc--CChhHHHHHHHHcccCCcEEEE
Q 024295          153 H----GMGVDYCF-ECT--GVPSLLSEALETTKVGKGKVIV  186 (269)
Q Consensus       153 ~----~~~~d~v~-d~~--g~~~~~~~~~~~l~~~~G~~v~  186 (269)
                      +    ...||.|| |+-  .....++.+++++++| |.++.
T Consensus       149 ~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~G-Gviv~  188 (247)
T PLN02589        149 EDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVG-GVIGY  188 (247)
T ss_pred             hccccCCcccEEEecCCHHHhHHHHHHHHHhcCCC-eEEEE
Confidence            2    13899997 443  2233578889999996 77654

>PLN02476 O-methyltransferase

Probab=97.08  E-value=0.0074  Score=49.76  Aligned_cols=105  Identities=16%  Similarity=0.241  Sum_probs=70.5

Q ss_pred             HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhh
Q 024295           77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      ....+..+.++||-+|++. |..++.+++.++. .+|+.++.+++..+.+++    .|..+-+....   .+..+.+.++
T Consensus       111 ~~L~~~~~ak~VLEIGT~t-GySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~---GdA~e~L~~l  186 (278)
T PLN02476        111 AMLVQILGAERCIEVGVYT-GYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKH---GLAAESLKSM  186 (278)
T ss_pred             HHHHHhcCCCeEEEecCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHH
Confidence            3456667789999999854 8888888887642 279999999988887755    45443333332   4444555443


Q ss_pred             h---CCCCccEEEEccCC---hhHHHHHHHHcccCCcEEEE
Q 024295          152 T---HGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIV  186 (269)
Q Consensus       152 ~---~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~  186 (269)
                      .   ....||.||--...   ...++.+++.+++| |.++.
T Consensus       187 ~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~G-GvIV~  226 (278)
T PLN02476        187 IQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVG-GVIVM  226 (278)
T ss_pred             HhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-cEEEE
Confidence            2   12379998743332   34578899999996 88765

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.06  E-value=0.0036  Score=49.71  Aligned_cols=112  Identities=16%  Similarity=0.205  Sum_probs=67.8

Q ss_pred             cccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCC
Q 024295           63 SFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDD  138 (269)
Q Consensus        63 a~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~  138 (269)
                      ..+..+...++  +....+++++.+||-+|+|. |..+..+++.. . +|++++.+++..+.+++    .+...+ +...
T Consensus        59 ~~~~~p~~~~~--l~~~l~~~~~~~VLeiG~Gs-G~~t~~la~~~-~-~v~~vd~~~~~~~~a~~~~~~~~~~~v-~~~~  132 (212)
T PRK00312         59 QTISQPYMVAR--MTELLELKPGDRVLEIGTGS-GYQAAVLAHLV-R-RVFSVERIKTLQWEAKRRLKQLGLHNV-SVRH  132 (212)
T ss_pred             CeeCcHHHHHH--HHHhcCCCCCCEEEEECCCc-cHHHHHHHHHh-C-EEEEEeCCHHHHHHHHHHHHHCCCCce-EEEE
Confidence            33333444443  34567888999999999876 66666666654 3 89999998877666644    343221 1111


Q ss_pred             CCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295          139 EPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       139 ~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                         .+..+   .+.....||+|+-..........+.+.+++| |+++..
T Consensus       133 ---~d~~~---~~~~~~~fD~I~~~~~~~~~~~~l~~~L~~g-G~lv~~  174 (212)
T PRK00312        133 ---GDGWK---GWPAYAPFDRILVTAAAPEIPRALLEQLKEG-GILVAP  174 (212)
T ss_pred             ---CCccc---CCCcCCCcCEEEEccCchhhhHHHHHhcCCC-cEEEEE
Confidence               11111   1111237998876544444567788999996 988764

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.06  E-value=0.0098  Score=45.33  Aligned_cols=98  Identities=21%  Similarity=0.241  Sum_probs=63.4

Q ss_pred             ccccccchhhhHHHHHHhcCCCCCCeEEEEcCCh-hHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCC
Q 024295           62 ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGT-VGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEP  140 (269)
Q Consensus        62 aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~-~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~  140 (269)
                      ....|+....+...+.....--.+++|||+|+|- +|..++..++..|+ +|+.+.++.                     
T Consensus        21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~---------------------   78 (168)
T cd01080          21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKT---------------------   78 (168)
T ss_pred             CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCc---------------------
Confidence            3445554444444333333345789999999986 59989999998999 788887642                     


Q ss_pred             CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          141 NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       141 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                       ++..+.+.      .+|+||.+++.+..+.  .+.++++ -.++.++.+.
T Consensus        79 -~~l~~~l~------~aDiVIsat~~~~ii~--~~~~~~~-~viIDla~pr  119 (168)
T cd01080          79 -KNLKEHTK------QADIVIVAVGKPGLVK--GDMVKPG-AVVIDVGINR  119 (168)
T ss_pred             -hhHHHHHh------hCCEEEEcCCCCceec--HHHccCC-eEEEEccCCC
Confidence             12222222      6899999998864322  2346664 6777777654

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK12742 oxidoreductase; Provisional

Probab=97.05  E-value=0.017  Score=46.36  Aligned_cols=77  Identities=22%  Similarity=0.289  Sum_probs=48.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcC-CcchHHHH-HhCCCcee-eCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDK-NPWKKEKG-KAFGMTDF-INPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~-~~~~~~~~-~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.+.+ ++++.+.+ .+.+...+ .|..+  ...+.+.+.+ . + ++|+
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~--~~~~~~~~~~-~-~-~id~   78 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGATAVQTDSAD--RDAVIDVVRK-S-G-ALDI   78 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCeEEecCCCC--HHHHHHHHHH-h-C-CCcE
Confidence            4689999986 8999999999988999 7777654 44444433 34554432 23222  1223233322 1 2 6999


Q ss_pred             EEEccCC
Q 024295          160 CFECTGV  166 (269)
Q Consensus       160 v~d~~g~  166 (269)
                      +++++|.
T Consensus        79 li~~ag~   85 (237)
T PRK12742         79 LVVNAGI   85 (237)
T ss_pred             EEECCCC
Confidence            9999864

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.03  E-value=0.0049  Score=55.45  Aligned_cols=74  Identities=16%  Similarity=0.225  Sum_probs=54.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      +.++++|+|+|.|.+|++++.+++..|+ +|++.|.++++.+.+++.|...+ ...     ...+.+      ..+|+|+
T Consensus         9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~~~-~~~-----~~~~~l------~~~D~VV   75 (488)
T PRK03369          9 LLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVATV-STS-----DAVQQI------ADYALVV   75 (488)
T ss_pred             ccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCEEE-cCc-----chHhHh------hcCCEEE
Confidence            5578999999999999999999999999 99999977666666777777433 221     111222      1579999


Q ss_pred             EccCChh
Q 024295          162 ECTGVPS  168 (269)
Q Consensus       162 d~~g~~~  168 (269)
                      .+.|-+.
T Consensus        76 ~SpGi~~   82 (488)
T PRK03369         76 TSPGFRP   82 (488)
T ss_pred             ECCCCCC
Confidence            9887653

>PRK06182 short chain dehydrogenase; Validated

Probab=97.02  E-value=0.0044  Score=51.17  Aligned_cols=80  Identities=19%  Similarity=0.221  Sum_probs=54.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce-eeCCCCCCCccHHHHHHhhhC-CCCccEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD-FINPDDEPNKSISELVKGITH-GMGVDYC  160 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d~v  160 (269)
                      ++++++|+|+ |.+|...++.+...|+ +|+++++++++.+.+.+.+... ..|-.+  .+++.+.+.+... ..++|++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~~~id~l   78 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASLGVHPLSLDVTD--EASIKAAVDTIIAEEGRIDVL   78 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCCeEEEeeCCC--HHHHHHHHHHHHHhcCCCCEE
Confidence            3578999986 8999999999888899 9999999888776665544432 223332  2333333333211 1279999


Q ss_pred             EEccCC
Q 024295          161 FECTGV  166 (269)
Q Consensus       161 ~d~~g~  166 (269)
                      +++.|.
T Consensus        79 i~~ag~   84 (273)
T PRK06182         79 VNNAGY   84 (273)
T ss_pred             EECCCc
Confidence            999874

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.00  E-value=0.0082  Score=49.97  Aligned_cols=43  Identities=19%  Similarity=0.220  Sum_probs=37.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK  126 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~  126 (269)
                      ++++|+|+|+|+.|.+++..+...|+++|+.++|+.+|.+.+.
T Consensus       126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la  168 (284)
T PRK12549        126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA  168 (284)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            5689999999999999999999999989999999988777653

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.99  E-value=0.023  Score=45.63  Aligned_cols=94  Identities=16%  Similarity=0.201  Sum_probs=61.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCC--eEEEEcCC----cchH--------HHHHhCCCceeeCCCCCCCccHHHHH
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAA--KIIGIDKN----PWKK--------EKGKAFGMTDFINPDDEPNKSISELV  148 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~--~v~~~~~~----~~~~--------~~~~~~g~~~v~~~~~~~~~~~~~~i  148 (269)
                      -++++++|+|+|..|.+++..+...|.+  +++.++++    .++.        +++++++...    .+   .++.+.+
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~----~~---~~l~~~l   95 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK----TG---GTLKEAL   95 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc----cc---CCHHHHH
Confidence            3578999999999999999888889998  89999988    4442        2334433211    11   2333333


Q ss_pred             HhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccC
Q 024295          149 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      .      ++|+++++++........++.++++ ..++.+..+
T Consensus        96 ~------~~dvlIgaT~~G~~~~~~l~~m~~~-~ivf~lsnP  130 (226)
T cd05311          96 K------GADVFIGVSRPGVVKKEMIKKMAKD-PIVFALANP  130 (226)
T ss_pred             h------cCCEEEeCCCCCCCCHHHHHhhCCC-CEEEEeCCC
Confidence            2      5899999996322224667777774 655555433

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.96  E-value=0.0064  Score=49.11  Aligned_cols=77  Identities=18%  Similarity=0.302  Sum_probs=52.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCcee-eCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDF-INPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      ++++++|+|+ |.+|...++.+...|+ +|+++++++++.+.+.+ .+...+ .|..+   ....+...+.  ..++|++
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~--~~~~d~v   81 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGCEPLRLDVGD---DAAIRAALAA--AGAFDGL   81 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeEEEecCCC---HHHHHHHHHH--hCCCCEE
Confidence            4678999986 8999999999999999 89999998877665543 444322 23332   3222222222  2278999


Q ss_pred             EEccCC
Q 024295          161 FECTGV  166 (269)
Q Consensus       161 ~d~~g~  166 (269)
                      |+++|.
T Consensus        82 i~~ag~   87 (245)
T PRK07060         82 VNCAGI   87 (245)
T ss_pred             EECCCC
Confidence            998874

>PRK08017 oxidoreductase; Provisional

Probab=96.94  E-value=0.0037  Score=50.90  Aligned_cols=77  Identities=22%  Similarity=0.348  Sum_probs=53.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHH---HHHhhhCCCCccEE
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISE---LVKGITHGMGVDYC  160 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~---~i~~~~~~~~~d~v  160 (269)
                      +++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+++.+...+. |..+  .....+   .+....++ .+|.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~i~~~~~~-~~~~i   78 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNSLGFTGILLDLDD--PESVERAADEVIALTDN-RLYGL   78 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHhCCCeEEEeecCC--HHHHHHHHHHHHHhcCC-CCeEE
Confidence            57999997 9999999999998899 899999998888877777654332 3322  122222   22222223 78888


Q ss_pred             EEccCC
Q 024295          161 FECTGV  166 (269)
Q Consensus       161 ~d~~g~  166 (269)
                      +.+.|.
T Consensus        79 i~~ag~   84 (256)
T PRK08017         79 FNNAGF   84 (256)
T ss_pred             EECCCC
Confidence            888763

>PRK00811 spermidine synthase; Provisional

Probab=96.93  E-value=0.0058  Score=50.85  Aligned_cols=99  Identities=12%  Similarity=0.054  Sum_probs=63.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-C-----C--ceeeCCCCCCCccHHHHHHhhhCC
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-G-----M--TDFINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g-----~--~~v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      ...++||++|+|. |..+..+++..+.++|++++.+++-.+.++++ .     .  +.-+....   .+..+.+.+ .+ 
T Consensus        75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~---~Da~~~l~~-~~-  148 (283)
T PRK00811         75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVI---GDGIKFVAE-TE-  148 (283)
T ss_pred             CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEE---CchHHHHhh-CC-
Confidence            3568999999876 77788888876777999999999888888763 1     1  10000011   333333433 23 


Q ss_pred             CCccEEEEccCC----------hhHHHHHHHHcccCCcEEEEEc
Q 024295          155 MGVDYCFECTGV----------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       155 ~~~d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ..+|+|+--...          ...++.+.+.|+++ |.++...
T Consensus       149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~g-Gvlv~~~  191 (283)
T PRK00811        149 NSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKED-GIFVAQS  191 (283)
T ss_pred             CcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEEeC
Confidence            389998743211          12356788899996 9988753

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=96.93  E-value=0.013  Score=48.04  Aligned_cols=99  Identities=21%  Similarity=0.223  Sum_probs=66.9

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC-ceeeCCCCCCCccHHHHHHhhhCCCC
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM-TDFINPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      ....+.++++||-+|+|. |..+..+++..+..+|++++.+++..+.+++.-. ..++..      +..    ++.....
T Consensus        25 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~------d~~----~~~~~~~   93 (258)
T PRK01683         25 ARVPLENPRYVVDLGCGP-GNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEA------DIA----SWQPPQA   93 (258)
T ss_pred             hhCCCcCCCEEEEEcccC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEEC------chh----ccCCCCC
Confidence            445667889999999886 7888888887754499999999988888776422 122211      111    1122238


Q ss_pred             ccEEEEccC------ChhHHHHHHHHcccCCcEEEEEc
Q 024295          157 VDYCFECTG------VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       157 ~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +|+|+-...      ....+..+.+.|++| |.++...
T Consensus        94 fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~~~~~~  130 (258)
T PRK01683         94 LDLIFANASLQWLPDHLELFPRLVSLLAPG-GVLAVQM  130 (258)
T ss_pred             ccEEEEccChhhCCCHHHHHHHHHHhcCCC-cEEEEEC
Confidence            999874332      133578889999996 9987753

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=96.92  E-value=0.016  Score=52.52  Aligned_cols=47  Identities=21%  Similarity=0.174  Sum_probs=39.2

Q ss_pred             HhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 024295           78 KEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG  125 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~  125 (269)
                      ...+.+.++++||+|+ |.+|..+++.+...|+ +|++++|+.++.+.+
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l  120 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESL  120 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            3456678899999986 9999999998888899 999999988776543

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.0047  Score=52.64  Aligned_cols=80  Identities=18%  Similarity=0.300  Sum_probs=52.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce-e--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD-F--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+    ++.|.+. +  .|-.+  .++..+.+.+... .
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   82 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTD--ADQVKALATQAASFG   82 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC--HHHHHHHHHHHHHhc
Confidence            4689999986 8999999999999999 899999988776543    3345432 1  23322  1222222222211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus        83 g~iD~lVnnAG~   94 (330)
T PRK06139         83 GRIDVWVNNVGV   94 (330)
T ss_pred             CCCCEEEECCCc
Confidence            279999999873

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.89  E-value=0.0044  Score=51.23  Aligned_cols=44  Identities=20%  Similarity=0.259  Sum_probs=39.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA  127 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~  127 (269)
                      ++++++|+|+|+.+.+++..++..|+++++++.|+.+|.+.+.+
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~  168 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD  168 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            47899999999999999999999998899999999988777654

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=96.88  E-value=0.0088  Score=46.79  Aligned_cols=95  Identities=23%  Similarity=0.207  Sum_probs=71.9

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      ..+.+-..|.-+|+|+ |...-.+++......|.++|.+++..+.+++...+.-+..         ..++++.+....|+
T Consensus        26 Vp~~~~~~v~DLGCGp-GnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~---------aDl~~w~p~~~~dl   95 (257)
T COG4106          26 VPLERPRRVVDLGCGP-GNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEE---------ADLRTWKPEQPTDL   95 (257)
T ss_pred             CCccccceeeecCCCC-CHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceec---------ccHhhcCCCCccch
Confidence            3444567788889998 9999999998865599999999999999988665432222         23677888778999


Q ss_pred             EEEcc------CChhHHHHHHHHcccCCcEEE
Q 024295          160 CFECT------GVPSLLSEALETTKVGKGKVI  185 (269)
Q Consensus       160 v~d~~------g~~~~~~~~~~~l~~~~G~~v  185 (269)
                      +|-..      ..+..+.+.+..+++| |.+.
T Consensus        96 lfaNAvlqWlpdH~~ll~rL~~~L~Pg-g~LA  126 (257)
T COG4106          96 LFANAVLQWLPDHPELLPRLVSQLAPG-GVLA  126 (257)
T ss_pred             hhhhhhhhhccccHHHHHHHHHhhCCC-ceEE
Confidence            98544      2455788999999996 8764

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.87  E-value=0.021  Score=47.03  Aligned_cols=106  Identities=22%  Similarity=0.322  Sum_probs=66.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce---ee--CCCCCCCccHHHHHHhhh-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD---FI--NPDDEPNKSISELVKGIT-  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---v~--~~~~~~~~~~~~~i~~~~-  152 (269)
                      .++.|+|+|+ +++|.+.+.-....|+ +++.+.+..++++.+    ++.++..   ++  |-.+  .++..+.+.+.. 
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~--~~~~~~~~~~~~~   87 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSD--EESVKKFVEWAIR   87 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCC--HHHHHHHHHHHHH
Confidence            4788999997 7999887777777799 777777777777766    3333222   11  2121  233333332221 


Q ss_pred             CCCCccEEEEccCCh-------------------------hHHHHHHHHcccCC-cEEEEEccCCC
Q 024295          153 HGMGVDYCFECTGVP-------------------------SLLSEALETTKVGK-GKVIVIGVGVD  192 (269)
Q Consensus       153 ~~~~~d~v~d~~g~~-------------------------~~~~~~~~~l~~~~-G~~v~~g~~~~  192 (269)
                      .-.++|+.++..|-.                         ...+.++..+++.+ |++|.+++..+
T Consensus        88 ~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG  153 (282)
T KOG1205|consen   88 HFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAG  153 (282)
T ss_pred             hcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecccc
Confidence            123899999988741                         12455666666533 99999987766

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.018  Score=46.24  Aligned_cols=80  Identities=18%  Similarity=0.241  Sum_probs=50.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCC---Cceee--CCCCCCCccHHHHHHhhhCC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFG---MTDFI--NPDDEPNKSISELVKGITHG-M  155 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g---~~~v~--~~~~~~~~~~~~~i~~~~~~-~  155 (269)
                      ++.+++|+|+ |.+|..+++.+...|+ +|+++++++++.+.+ +++.   .-+.+  |..+  ..++.+.+.+.... .
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   81 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNKGNVLGLAADVRD--EADVQRAVDAIVAAFG   81 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCC--HHHHHHHHHHHHHHcC
Confidence            4688999986 8999999888888899 899999987665544 2232   11122  2222  23333334333211 2


Q ss_pred             CccEEEEccCC
Q 024295          156 GVDYCFECTGV  166 (269)
Q Consensus       156 ~~d~v~d~~g~  166 (269)
                      ++|++|++.|.
T Consensus        82 ~~d~vi~~ag~   92 (237)
T PRK07326         82 GLDVLIANAGV   92 (237)
T ss_pred             CCCEEEECCCC
Confidence            79999998764

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.86  E-value=0.01  Score=46.84  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      .+.+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            46789999999999999999999999899999866

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=96.84  E-value=0.021  Score=46.70  Aligned_cols=97  Identities=20%  Similarity=0.168  Sum_probs=67.7

Q ss_pred             HHhcCCCCCCeEEEEcCChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCC
Q 024295           77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      .......++.+||-+|+|. |..+..+++.. +. +|++++.+++..+.+++.+.+.+.       .+..    ++....
T Consensus        22 l~~l~~~~~~~vLDlGcG~-G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~~~~~~~~~-------~d~~----~~~~~~   88 (255)
T PRK14103         22 LARVGAERARRVVDLGCGP-GNLTRYLARRWPGA-VIEALDSSPEMVAAARERGVDART-------GDVR----DWKPKP   88 (255)
T ss_pred             HHhCCCCCCCEEEEEcCCC-CHHHHHHHHHCCCC-EEEEEECCHHHHHHHHhcCCcEEE-------cChh----hCCCCC
Confidence            3455667889999999986 77888888875 45 899999999888888876544332       2221    121223


Q ss_pred             CccEEEEccC-----C-hhHHHHHHHHcccCCcEEEEE
Q 024295          156 GVDYCFECTG-----V-PSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       156 ~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      .||+|+-...     . ...+..+.+.|++| |+++..
T Consensus        89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~~~  125 (255)
T PRK14103         89 DTDVVVSNAALQWVPEHADLLVRWVDELAPG-SWIAVQ  125 (255)
T ss_pred             CceEEEEehhhhhCCCHHHHHHHHHHhCCCC-cEEEEE
Confidence            7999975331     1 33577888999997 998764

>PRK04266 fibrillarin; Provisional

Probab=96.83  E-value=0.026  Score=45.32  Aligned_cols=102  Identities=19%  Similarity=0.172  Sum_probs=63.3

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhC
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      +...++++++||-+|+|+ |..+..+++..+..+|++++.+++..+.+.+    ...-..+..+.   .+. .....+ .
T Consensus        66 ~~l~i~~g~~VlD~G~G~-G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~---~~~-~~~~~l-~  139 (226)
T PRK04266         66 KNFPIKKGSKVLYLGAAS-GTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADA---RKP-ERYAHV-V  139 (226)
T ss_pred             hhCCCCCCCEEEEEccCC-CHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCC---CCc-chhhhc-c
Confidence            357889999999999876 6677777777653389999999876664433    21112221111   110 000111 1


Q ss_pred             CCCccEEEEccCChh----HHHHHHHHcccCCcEEEEE
Q 024295          154 GMGVDYCFECTGVPS----LLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       154 ~~~~d~v~d~~g~~~----~~~~~~~~l~~~~G~~v~~  187 (269)
                      + .+|+++-....+.    .+..+.+.|++| |+++..
T Consensus       140 ~-~~D~i~~d~~~p~~~~~~L~~~~r~LKpG-G~lvI~  175 (226)
T PRK04266        140 E-KVDVIYQDVAQPNQAEIAIDNAEFFLKDG-GYLLLA  175 (226)
T ss_pred             c-cCCEEEECCCChhHHHHHHHHHHHhcCCC-cEEEEE
Confidence            2 6999985443321    267888899997 998874

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.82  E-value=0.033  Score=43.80  Aligned_cols=110  Identities=24%  Similarity=0.272  Sum_probs=68.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      ++.+++|.|.|.+|..+++.+...|+ +|++.++++++.+.+++ +++. .++..+         +.   . ..+|+++.
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~~-~v~~~~---------l~---~-~~~Dv~vp   91 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGAT-VVAPEE---------IY---S-VDADVFAP   91 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE-EEcchh---------hc---c-ccCCEEEe
Confidence            57899999999999999999999999 99999998887776654 4644 232211         11   1 16899997


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEe
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKG  211 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  211 (269)
                      |......-...++.++..  .++.-+..+-.. +-....+..+++.+.+
T Consensus        92 ~A~~~~I~~~~~~~l~~~--~v~~~AN~~~~~-~~~~~~L~~~Gi~~~P  137 (200)
T cd01075          92 CALGGVINDDTIPQLKAK--AIAGAANNQLAD-PRHGQMLHERGILYAP  137 (200)
T ss_pred             cccccccCHHHHHHcCCC--EEEECCcCccCC-HhHHHHHHHCCCEEeC
Confidence            764433344555666542  333322221111 1222334457777766

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.82  E-value=0.0073  Score=54.05  Aligned_cols=77  Identities=26%  Similarity=0.405  Sum_probs=54.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc---------------------chHHHHHhCCCceeeCCCCCCCc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP---------------------WKKEKGKAFGMTDFINPDDEPNK  142 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~---------------------~~~~~~~~~g~~~v~~~~~~~~~  142 (269)
                      .+++|+|+|+|+.|+.++..++..|. +|+.+++.+                     ...+.++++|.+..++..-  ..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v--~~  216 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEV--GR  216 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEe--CC
Confidence            46899999999999999999999999 888887654                     2345677888776655432  01


Q ss_pred             cHHHHHHhhhCCCCccEEEEccCCh
Q 024295          143 SISELVKGITHGMGVDYCFECTGVP  167 (269)
Q Consensus       143 ~~~~~i~~~~~~~~~d~v~d~~g~~  167 (269)
                      ++  .+.+..  .++|.||.++|..
T Consensus       217 ~~--~~~~~~--~~~D~vilAtGa~  237 (467)
T TIGR01318       217 DI--SLDDLL--EDYDAVFLGVGTY  237 (467)
T ss_pred             cc--CHHHHH--hcCCEEEEEeCCC
Confidence            11  111111  2799999999875

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=96.81  E-value=0.0057  Score=49.56  Aligned_cols=108  Identities=19%  Similarity=0.229  Sum_probs=67.2

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHH-HHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAA-KIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSIS-ELVK  149 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~-~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~-~~i~  149 (269)
                      +.....+.||++|+--|.|+ |.++..+++..|.. +|+..+.++++.+.+++    .|....+.-..   .|.. +...
T Consensus        32 I~~~l~i~pG~~VlEaGtGS-G~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~---~Dv~~~g~~  107 (247)
T PF08704_consen   32 ILMRLDIRPGSRVLEAGTGS-GSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHH---RDVCEEGFD  107 (247)
T ss_dssp             HHHHTT--TT-EEEEE--TT-SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEE---S-GGCG--S
T ss_pred             HHHHcCCCCCCEEEEecCCc-HHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEe---cceeccccc
Confidence            45678999999999999876 88888999988743 99999999988887754    45432111110   1111 1111


Q ss_pred             hhhCCCCccEEEEccCCh-hHHHHHHHHc-ccCCcEEEEEcc
Q 024295          150 GITHGMGVDYCFECTGVP-SLLSEALETT-KVGKGKVIVIGV  189 (269)
Q Consensus       150 ~~~~~~~~d~v~d~~g~~-~~~~~~~~~l-~~~~G~~v~~g~  189 (269)
                      +-. ...+|.||=-...| ..+..+.+.| ++| |+++.+..
T Consensus       108 ~~~-~~~~DavfLDlp~Pw~~i~~~~~~L~~~g-G~i~~fsP  147 (247)
T PF08704_consen  108 EEL-ESDFDAVFLDLPDPWEAIPHAKRALKKPG-GRICCFSP  147 (247)
T ss_dssp             TT--TTSEEEEEEESSSGGGGHHHHHHHE-EEE-EEEEEEES
T ss_pred             ccc-cCcccEEEEeCCCHHHHHHHHHHHHhcCC-ceEEEECC
Confidence            101 13789886444443 3688999999 896 99999853

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.79  E-value=0.013  Score=49.42  Aligned_cols=91  Identities=26%  Similarity=0.451  Sum_probs=61.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      .+|.|+|+|.+|...+..++..|. .+|+++++++++.+.+++.|......      .+..+.+      ...|+|+.|+
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~------~~~~~~~------~~aDvViiav   74 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVT------TSAAEAV------KGADLVILCV   74 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceec------CCHHHHh------cCCCEEEECC
Confidence            579999999999999888888774 38999999998888888877422111      1121222      1689999999


Q ss_pred             CChhH---HHHHHHHcccCCcEEEEEcc
Q 024295          165 GVPSL---LSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       165 g~~~~---~~~~~~~l~~~~G~~v~~g~  189 (269)
                      .....   +..+...++++ ..++.+|.
T Consensus        75 p~~~~~~v~~~l~~~l~~~-~iv~dvgs  101 (307)
T PRK07502         75 PVGASGAVAAEIAPHLKPG-AIVTDVGS  101 (307)
T ss_pred             CHHHHHHHHHHHHhhCCCC-CEEEeCcc
Confidence            75422   33333455664 66666654

>PLN03075 nicotianamine synthase; Provisional

Probab=96.79  E-value=0.013  Score=48.73  Aligned_cols=97  Identities=12%  Similarity=0.132  Sum_probs=64.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhCC-C----ceeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKAFG-M----TDFINPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~~g-~----~~v~~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      +.++|+-+|+|+.++.++.+++.+.. .+++++|.+++..+.+++.- .    ..-+....   .+..+.   .....+|
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~---~Da~~~---~~~l~~F  196 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHT---ADVMDV---TESLKEY  196 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEE---Cchhhc---ccccCCc
Confidence            67999999999999999888876543 38999999998888887632 1    11111111   222211   1112389


Q ss_pred             cEEEEcc-------CChhHHHHHHHHcccCCcEEEEE
Q 024295          158 DYCFECT-------GVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       158 d~v~d~~-------g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      |+||-.+       .....++.+.+.+++| |.++.=
T Consensus       197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPG-G~Lvlr  232 (296)
T PLN03075        197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPG-ALLMLR  232 (296)
T ss_pred             CEEEEecccccccccHHHHHHHHHHhcCCC-cEEEEe
Confidence            9998654       1233578899999996 887654

>PRK04457 spermidine synthase; Provisional

Probab=96.79  E-value=0.02  Score=47.10  Aligned_cols=94  Identities=13%  Similarity=0.141  Sum_probs=65.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CC----c--eeeCCCCCCCccHHHHHHhhhCCC
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GM----T--DFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~----~--~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      .+.++||++|+|+ |..+..+++.....++++++.+++-.+.+++. +.    .  .++.      .+..+.+.+. + .
T Consensus        65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~------~Da~~~l~~~-~-~  135 (262)
T PRK04457         65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIE------ADGAEYIAVH-R-H  135 (262)
T ss_pred             CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEE------CCHHHHHHhC-C-C
Confidence            3567899999886 88888888877544999999999999888873 31    1  1221      3444444432 2 3


Q ss_pred             CccEEE-EccCC---------hhHHHHHHHHcccCCcEEEE
Q 024295          156 GVDYCF-ECTGV---------PSLLSEALETTKVGKGKVIV  186 (269)
Q Consensus       156 ~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~  186 (269)
                      .+|+|+ |+...         ...++.+.+.|+++ |.++.
T Consensus       136 ~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pg-Gvlvi  175 (262)
T PRK04457        136 STDVILVDGFDGEGIIDALCTQPFFDDCRNALSSD-GIFVV  175 (262)
T ss_pred             CCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCC-cEEEE
Confidence            799886 44321         24678889999996 99876

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.78  E-value=0.0093  Score=49.53  Aligned_cols=45  Identities=20%  Similarity=0.213  Sum_probs=38.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA  127 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~  127 (269)
                      ..+++++|+|+|++|.+++..+...|+.+|+++.|+.++.+.+.+
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~  165 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAK  165 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            356889999999999999999999996699999999887766543

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.0079  Score=49.06  Aligned_cols=80  Identities=19%  Similarity=0.258  Sum_probs=52.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCce-eeCCCCCCCccHHHHHHhhhC-CCCccE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTD-FINPDDEPNKSISELVKGITH-GMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d~  159 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.. .+++... ..|..+  +..+.+.+.+..+ ..++|+
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGGLFVPTDVTD--EDAVNALFDTAAETYGSVDI   82 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcCCcEEEeeCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            5789999986 9999999999998999 999999887765544 3344322 223332  1222222322211 127899


Q ss_pred             EEEccCC
Q 024295          160 CFECTGV  166 (269)
Q Consensus       160 v~d~~g~  166 (269)
                      ++.+.|.
T Consensus        83 vi~~ag~   89 (255)
T PRK06057         83 AFNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9998863

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.77  E-value=0.027  Score=42.73  Aligned_cols=88  Identities=19%  Similarity=0.240  Sum_probs=57.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      .+|-++|.|.+|...+.-+...|+ +|++.++++++.+.+.+.|+...        ++..+.+.      ..|+||-++.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~~~~--------~s~~e~~~------~~dvvi~~v~   66 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGAEVA--------DSPAEAAE------QADVVILCVP   66 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTEEEE--------SSHHHHHH------HBSEEEE-SS
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhhhhh--------hhhhhHhh------cccceEeecc
Confidence            368899999999998888888899 99999999999999888774422        22222332      4588888887


Q ss_pred             ChhHHHHHHH------HcccCCcEEEEEcc
Q 024295          166 VPSLLSEALE------TTKVGKGKVIVIGV  189 (269)
Q Consensus       166 ~~~~~~~~~~------~l~~~~G~~v~~g~  189 (269)
                      ........+.      .++++ ..++.++.
T Consensus        67 ~~~~v~~v~~~~~i~~~l~~g-~iiid~sT   95 (163)
T PF03446_consen   67 DDDAVEAVLFGENILAGLRPG-KIIIDMST   95 (163)
T ss_dssp             SHHHHHHHHHCTTHGGGS-TT-EEEEE-SS
T ss_pred             cchhhhhhhhhhHHhhccccc-eEEEecCC
Confidence            7555555443      34453 45555543

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR00477 tehB tellurite resistance protein TehB

Probab=96.75  E-value=0.0089  Score=46.85  Aligned_cols=100  Identities=17%  Similarity=0.284  Sum_probs=61.2

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHhh
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      +.......++.+||.+|+|. |..+..+++. |. +|+++|.+++..+.+++.    +..  +....   .+... . ..
T Consensus        22 l~~~~~~~~~~~vLDiGcG~-G~~a~~la~~-g~-~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~---~d~~~-~-~~   91 (195)
T TIGR00477        22 VREAVKTVAPCKTLDLGCGQ-GRNSLYLSLA-GY-DVRAWDHNPASIASVLDMKARENLP--LRTDA---YDINA-A-AL   91 (195)
T ss_pred             HHHHhccCCCCcEEEeCCCC-CHHHHHHHHC-CC-eEEEEECCHHHHHHHHHHHHHhCCC--ceeEe---ccchh-c-cc
Confidence            33444555667899999876 8888877774 77 999999998777766442    222  11110   11110 0 11


Q ss_pred             hCCCCccEEEEccC-----C---hhHHHHHHHHcccCCcEEEEEc
Q 024295          152 THGMGVDYCFECTG-----V---PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       152 ~~~~~~d~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                       ++ .+|+|+...-     .   +..+..+.+.|++| |.++.+.
T Consensus        92 -~~-~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lli~~  133 (195)
T TIGR00477        92 -NE-DYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPG-GYNLIVA  133 (195)
T ss_pred             -cC-CCCEEEEecccccCCHHHHHHHHHHHHHHhCCC-cEEEEEE
Confidence             23 7999875421     1   23577888899996 9865543

Part of a tellurite-reducing operon tehA and tehB

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.73  E-value=0.0067  Score=50.48  Aligned_cols=75  Identities=17%  Similarity=0.059  Sum_probs=51.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCce-eeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTD-FINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      ++++++|+|+|+.+.+++..+...|+++|+++.|+.+|.+.+.+ ++... +...     ... +++.+..  ..+|+|+
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~-----~~~-~~~~~~~--~~~DiVI  195 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRL-----EGD-SGGLAIE--KAAEVLV  195 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceec-----cch-hhhhhcc--cCCCEEE
Confidence            57899999999999999999999999899999999887776543 43211 1100     000 1111111  2689999


Q ss_pred             EccCC
Q 024295          162 ECTGV  166 (269)
Q Consensus       162 d~~g~  166 (269)
                      +|+..
T Consensus       196 naTp~  200 (282)
T TIGR01809       196 STVPA  200 (282)
T ss_pred             ECCCC
Confidence            99864

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.73  E-value=0.042  Score=45.00  Aligned_cols=80  Identities=18%  Similarity=0.177  Sum_probs=52.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCc-ee--eCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMT-DF--INPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      +++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+ ++++.. ..  .|..+  .+++.+.+.+... -..+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~i   81 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLGERARFIATDITD--DAAIERAVATVVARFGRV   81 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeeEEEEecCCC--HHHHHHHHHHHHHHhCCC
Confidence            4678999986 8999999999888999 999999987765544 344422 12  23322  2333333333211 1268


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |+++++.|.
T Consensus        82 d~lv~~ag~   90 (261)
T PRK08265         82 DILVNLACT   90 (261)
T ss_pred             CEEEECCCC
Confidence            999998863

>PRK07806 short chain dehydrogenase; Provisional

Probab=96.72  E-value=0.035  Score=44.91  Aligned_cols=102  Identities=19%  Similarity=0.192  Sum_probs=59.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc-hHHH----HHhCCCc-ee--eCCCCCCCccHHHHHHhhhCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW-KKEK----GKAFGMT-DF--INPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~-~~~~----~~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      +++++||+|+ |.+|...+..+...|+ +|+++.++.+ +.+.    ++..+.. ..  .|..+  +++..+.+.+....
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   81 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTD--EESVAALMDTAREE   81 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHh
Confidence            4678999986 8999999998888899 8888887643 2222    2222321 11  23322  22233333322211


Q ss_pred             -CCccEEEEccCCh-------------------hHHHHHHHHcccCCcEEEEEcc
Q 024295          155 -MGVDYCFECTGVP-------------------SLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       155 -~~~d~v~d~~g~~-------------------~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                       .++|+++.+.+..                   ..++.+...+..+ |+++.++.
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~-~~iv~isS  135 (248)
T PRK07806         82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAG-SRVVFVTS  135 (248)
T ss_pred             CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCC-ceEEEEeC
Confidence             2689998877532                   1234444455554 88888865

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=96.72  E-value=0.01  Score=48.83  Aligned_cols=105  Identities=17%  Similarity=0.155  Sum_probs=67.8

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc-eeeCCCCCCCccHHHHHHhhhCC
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT-DFINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      +....++.++.+||-+|+|. |..+..+++..++ +|++++.+++..+.+++.... .-+....   .++.   ..-.+.
T Consensus        44 ~l~~l~l~~~~~VLDiGcG~-G~~a~~la~~~~~-~v~giD~s~~~~~~a~~~~~~~~~i~~~~---~D~~---~~~~~~  115 (263)
T PTZ00098         44 ILSDIELNENSKVLDIGSGL-GGGCKYINEKYGA-HVHGVDICEKMVNIAKLRNSDKNKIEFEA---NDIL---KKDFPE  115 (263)
T ss_pred             HHHhCCCCCCCEEEEEcCCC-ChhhHHHHhhcCC-EEEEEECCHHHHHHHHHHcCcCCceEEEE---CCcc---cCCCCC
Confidence            44567888999999999875 6667777777787 999999998888877763211 0011100   1111   001122


Q ss_pred             CCccEEEE--cc---C---ChhHHHHHHHHcccCCcEEEEEcc
Q 024295          155 MGVDYCFE--CT---G---VPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       155 ~~~d~v~d--~~---g---~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      ..||+|+-  +.   +   ....+..+.+.|+|| |+++....
T Consensus       116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG-G~lvi~d~  157 (263)
T PTZ00098        116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPN-GILLITDY  157 (263)
T ss_pred             CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            37999985  22   1   123577888999997 99987654

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=96.72  E-value=0.032  Score=43.33  Aligned_cols=98  Identities=19%  Similarity=0.319  Sum_probs=64.1

Q ss_pred             HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHHh
Q 024295           77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVKG  150 (269)
Q Consensus        77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~  150 (269)
                      .....+.++.+||-+|+|. |..+..+++.....+|++++.+++..+.+++    .+..  .++..      +....   
T Consensus        24 ~~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~------d~~~~---   93 (187)
T PRK08287         24 LSKLELHRAKHLIDVGAGT-GSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG------EAPIE---   93 (187)
T ss_pred             HHhcCCCCCCEEEEECCcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec------Cchhh---
Confidence            3455677889999999876 7777788877543499999999887777654    3322  22221      11111   


Q ss_pred             hhCCCCccEEEEccC---ChhHHHHHHHHcccCCcEEEEE
Q 024295          151 ITHGMGVDYCFECTG---VPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       151 ~~~~~~~d~v~d~~g---~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      . .+ .+|+|+....   -...+..+.+.++++ |+++..
T Consensus        94 ~-~~-~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~lv~~  130 (187)
T PRK08287         94 L-PG-KADAIFIGGSGGNLTAIIDWSLAHLHPG-GRLVLT  130 (187)
T ss_pred             c-Cc-CCCEEEECCCccCHHHHHHHHHHhcCCC-eEEEEE
Confidence            1 22 7999985432   123567788999996 998764

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.71  E-value=0.013  Score=54.68  Aligned_cols=77  Identities=27%  Similarity=0.368  Sum_probs=55.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcc---------------------hHHHHHhCCCceeeCCCCCCCc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW---------------------KKEKGKAFGMTDFINPDDEPNK  142 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~---------------------~~~~~~~~g~~~v~~~~~~~~~  142 (269)
                      .+++|+|+|+|+.|+.++..++..|+ +|+++++.+.                     +.+.++++|.+..++..-..+-
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  387 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI  387 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence            47999999999999999999999999 8999986652                     4556677888766665320011


Q ss_pred             cHHHHHHhhhCCCCccEEEEccCCh
Q 024295          143 SISELVKGITHGMGVDYCFECTGVP  167 (269)
Q Consensus       143 ~~~~~i~~~~~~~~~d~v~d~~g~~  167 (269)
                      .+.    ++.  .++|.||.++|..
T Consensus       388 ~~~----~l~--~~~DaV~latGa~  406 (639)
T PRK12809        388 TFS----DLT--SEYDAVFIGVGTY  406 (639)
T ss_pred             CHH----HHH--hcCCEEEEeCCCC
Confidence            221    221  2799999999863

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=96.70  E-value=0.0057  Score=47.34  Aligned_cols=94  Identities=20%  Similarity=0.250  Sum_probs=59.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCceeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTDFINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      ++.+||-+|+|+ |..++.+++.....+|++++.+++..+.++    +.+.+.+ ....   .+..+    +.....+|+
T Consensus        42 ~~~~vLDiGcGt-G~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i-~~i~---~d~~~----~~~~~~fD~  112 (181)
T TIGR00138        42 DGKKVIDIGSGA-GFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNV-EIVN---GRAED----FQHEEQFDV  112 (181)
T ss_pred             CCCeEEEecCCC-CccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCe-EEEe---cchhh----ccccCCccE
Confidence            478999999876 777777776654348999999987666554    3443221 1111   22222    112238998


Q ss_pred             EEEcc-C-ChhHHHHHHHHcccCCcEEEEE
Q 024295          160 CFECT-G-VPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       160 v~d~~-g-~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      |+-.. . -+..++.+.+.+++| |+++..
T Consensus       113 I~s~~~~~~~~~~~~~~~~Lkpg-G~lvi~  141 (181)
T TIGR00138       113 ITSRALASLNVLLELTLNLLKVG-GYFLAY  141 (181)
T ss_pred             EEehhhhCHHHHHHHHHHhcCCC-CEEEEE
Confidence            87432 2 233566778899996 998876

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.024  Score=48.38  Aligned_cols=80  Identities=16%  Similarity=0.130  Sum_probs=51.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce---eeCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD---FINPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      ++++++|+|+ |.+|...++.+...|+ +|+.+++++++.+.+    ++.|...   ..|..+  ..+..+.+.+... -
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d--~~~v~~~~~~~~~~~   83 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVAD--AEAVQAAADRAEEEL   83 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCC--HHHHHHHHHHHHHHC
Confidence            4678999986 8999999998888999 899999988766543    2345332   123322  1223222222211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus        84 g~iD~lInnAg~   95 (334)
T PRK07109         84 GPIDTWVNNAMV   95 (334)
T ss_pred             CCCCEEEECCCc
Confidence            279999999874

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.01  Score=48.37  Aligned_cols=81  Identities=20%  Similarity=0.204  Sum_probs=52.3

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC-ceee--CCCCCCCccHHHHHHhhh-C
Q 024295           83 EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM-TDFI--NPDDEPNKSISELVKGIT-H  153 (269)
Q Consensus        83 ~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~v~--~~~~~~~~~~~~~i~~~~-~  153 (269)
                      ..++++||+|+ |.+|..++..+...|+ +|+++++++++.+.+..    .+. .+++  |..+  .+++.+.+.+.. .
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   83 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTD--YQSIKAAVAHAETE   83 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHh
Confidence            35789999986 9999999999988999 89999998877654432    121 1222  2222  133333333221 1


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      ...+|+++++.|.
T Consensus        84 ~~~~d~li~~ag~   96 (258)
T PRK06949         84 AGTIDILVNNSGV   96 (258)
T ss_pred             cCCCCEEEECCCC
Confidence            1278999998873

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.68  E-value=0.027  Score=46.57  Aligned_cols=96  Identities=21%  Similarity=0.325  Sum_probs=64.3

Q ss_pred             cccccchhhhHHHHHHhcCC-CCCCeEEEEcCCh-hHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCC
Q 024295           63 SFLSCGFTTGYGAAWKEAKV-EKGSSVAVLGLGT-VGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEP  140 (269)
Q Consensus        63 a~~~~~~~~a~~~l~~~~~~-~~~~~vlI~G~g~-~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~  140 (269)
                      ..+||+....+. +.+...+ -.|++++|+|.|. +|.-+..++...|+ .|+...+..                     
T Consensus       136 ~~~PcTp~ai~~-ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t---------------------  192 (286)
T PRK14175        136 TFVPCTPLGIME-ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRS---------------------  192 (286)
T ss_pred             CCCCCcHHHHHH-HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc---------------------
Confidence            345554433333 2333332 4789999999865 99999999999999 887776421                     


Q ss_pred             CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          141 NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       141 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                       .++.+.++      .+|+|+.++|.+..+..  +.++++ ..++.+|...
T Consensus       193 -~~l~~~~~------~ADIVIsAvg~p~~i~~--~~vk~g-avVIDvGi~~  233 (286)
T PRK14175        193 -KDMASYLK------DADVIVSAVGKPGLVTK--DVVKEG-AVIIDVGNTP  233 (286)
T ss_pred             -hhHHHHHh------hCCEEEECCCCCcccCH--HHcCCC-cEEEEcCCCc
Confidence             22222222      68999999998755444  458886 8888888654

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.68  E-value=0.027  Score=50.11  Aligned_cols=79  Identities=15%  Similarity=0.222  Sum_probs=49.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc--hHHH-HHhCCCce-eeCCCCCCCccHHHHHHh-hhC-CCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW--KKEK-GKAFGMTD-FINPDDEPNKSISELVKG-ITH-GMG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~--~~~~-~~~~g~~~-v~~~~~~~~~~~~~~i~~-~~~-~~~  156 (269)
                      +++++||+|+ |.+|...++.+...|+ +|+++++++.  +.+. .++++... ..|..+   .+-.+.+.+ ... ..+
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~---~~~~~~~~~~~~~~~g~  284 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPAAGEALAAVANRVGGTALALDITA---PDAPARIAEHLAERHGG  284 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCC---HHHHHHHHHHHHHhCCC
Confidence            5789999986 9999999999998999 8888887432  2222 23455432 234333   332223222 211 126


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|+++++.|.
T Consensus       285 id~vi~~AG~  294 (450)
T PRK08261        285 LDIVVHNAGI  294 (450)
T ss_pred             CCEEEECCCc
Confidence            9999999873

>PLN02366 spermidine synthase

Probab=96.67  E-value=0.031  Score=47.06  Aligned_cols=104  Identities=15%  Similarity=0.066  Sum_probs=64.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CCc-eeeCCCCC--CCccHHHHHHhhhCCCCc
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GMT-DFINPDDE--PNKSISELVKGITHGMGV  157 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~~-~v~~~~~~--~~~~~~~~i~~~~~~~~~  157 (269)
                      ....++|||+|+|. |.++..+++.-+..+|++++.+++-.+.++++ ... ..++....  -..+..+.+++..+ ..+
T Consensus        89 ~~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~-~~y  166 (308)
T PLN02366         89 IPNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPE-GTY  166 (308)
T ss_pred             CCCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccC-CCC
Confidence            34578999999876 66777888876666899999988878877773 210 00111000  00333333443322 379


Q ss_pred             cEEEE-ccC---------ChhHHHHHHHHcccCCcEEEEEc
Q 024295          158 DYCFE-CTG---------VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       158 d~v~d-~~g---------~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      |+|+- +..         ....++.+.+.|+++ |.++.-.
T Consensus       167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pg-Gvlv~q~  206 (308)
T PLN02366        167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPG-GVVCTQA  206 (308)
T ss_pred             CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEECc
Confidence            98874 332         112477888999996 9997654

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.67  E-value=0.013  Score=46.22  Aligned_cols=92  Identities=16%  Similarity=0.084  Sum_probs=60.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcc-hHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW-KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      .+++|||+|+|.+|..-++.+...|+ +|++++.... ....+.+.|.-..+. .+   ..  ..  .+   .++++|+-
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~~~l~~l~~~~~i~~~~-~~---~~--~~--dl---~~~~lVi~   75 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELESELTLLAEQGGITWLA-RC---FD--AD--IL---EGAFLVIA   75 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCCHHHHHHHHcCCEEEEe-CC---CC--HH--Hh---CCcEEEEE
Confidence            47899999999999999999999999 8998876543 233333333211221 11   11  11  11   27899999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEc
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +++.+..-..+....+.. |..+..-
T Consensus        76 at~d~~ln~~i~~~a~~~-~ilvn~~  100 (205)
T TIGR01470        76 ATDDEELNRRVAHAARAR-GVPVNVV  100 (205)
T ss_pred             CCCCHHHHHHHHHHHHHc-CCEEEEC
Confidence            999875555666666663 7766554

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK00536 speE spermidine synthase; Provisional

Probab=96.66  E-value=0.009  Score=48.83  Aligned_cols=99  Identities=8%  Similarity=-0.093  Sum_probs=66.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCC-ceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGM-TDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      .-++|||+|+|- |.++-.++|+-  ++|+.++-+++-.+.+++ +.. ...++...   -.+...+.+...+ .||+||
T Consensus        72 ~pk~VLIiGGGD-Gg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpR---v~l~~~~~~~~~~-~fDVII  144 (262)
T PRK00536         72 ELKEVLIVDGFD-LELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKN---FTHAKQLLDLDIK-KYDLII  144 (262)
T ss_pred             CCCeEEEEcCCc-hHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCC---EEEeehhhhccCC-cCCEEE
Confidence            458999998876 77778888875  399999999988888888 331 11222222   2222233332223 899886


Q ss_pred             -EccCChhHHHHHHHHcccCCcEEEEEccC
Q 024295          162 -ECTGVPSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       162 -d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                       |.+-.+...+.+.+.|+++ |.++.-+.+
T Consensus       145 vDs~~~~~fy~~~~~~L~~~-Gi~v~Qs~s  173 (262)
T PRK00536        145 CLQEPDIHKIDGLKRMLKED-GVFISVAKH  173 (262)
T ss_pred             EcCCCChHHHHHHHHhcCCC-cEEEECCCC
Confidence             6565565678899999996 998876543

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=96.66  E-value=0.01  Score=47.69  Aligned_cols=102  Identities=24%  Similarity=0.318  Sum_probs=65.3

Q ss_pred             HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhC----CCce--eeCCCCCCCccHHHHHH
Q 024295           77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKAF----GMTD--FINPDDEPNKSISELVK  149 (269)
Q Consensus        77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~~----g~~~--v~~~~~~~~~~~~~~i~  149 (269)
                      .....++++++||-+|+|. |..+..+++..+. .+|++++.+++..+.+++.    +.+.  ++..      +..+ + 
T Consensus        38 l~~l~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~------d~~~-~-  108 (231)
T TIGR02752        38 MKRMNVQAGTSALDVCCGT-ADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHG------NAME-L-  108 (231)
T ss_pred             HHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEe------chhc-C-
Confidence            3456778899999999876 7777888887643 3899999998877776542    2211  1211      1111 0 


Q ss_pred             hhhCCCCccEEEEccC------ChhHHHHHHHHcccCCcEEEEEcc
Q 024295          150 GITHGMGVDYCFECTG------VPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       150 ~~~~~~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      .. +...+|+|+-...      ....+..+.+.+++| |+++....
T Consensus       109 ~~-~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~g-G~l~~~~~  152 (231)
T TIGR02752       109 PF-DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPG-GKVVCLET  152 (231)
T ss_pred             CC-CCCCccEEEEecccccCCCHHHHHHHHHHHcCcC-eEEEEEEC
Confidence            11 2237999874321      123467788999997 99987653

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK07825 short chain dehydrogenase; Provisional

Probab=96.66  E-value=0.012  Score=48.53  Aligned_cols=79  Identities=19%  Similarity=0.266  Sum_probs=51.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCC-Cce-eeCCCCCCCccHHHHHHhhhCC-CCccE
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFG-MTD-FINPDDEPNKSISELVKGITHG-MGVDY  159 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g-~~~-v~~~~~~~~~~~~~~i~~~~~~-~~~d~  159 (269)
                      +.++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+ ++++ ... ..|..+  ++++.+.+.+.... .++|+
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   81 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELGLVVGGPLDVTD--PASFAAFLDAVEADLGPIDV   81 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEccCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            578999986 8999999888888899 899999888776654 3344 221 223332  23333333332211 27999


Q ss_pred             EEEccCC
Q 024295          160 CFECTGV  166 (269)
Q Consensus       160 v~d~~g~  166 (269)
                      ++++.|.
T Consensus        82 li~~ag~   88 (273)
T PRK07825         82 LVNNAGV   88 (273)
T ss_pred             EEECCCc
Confidence            9999874

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.66  E-value=0.013  Score=47.41  Aligned_cols=79  Identities=22%  Similarity=0.221  Sum_probs=51.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc---eeeCCCCCCCccHHHHHHhhhCC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT---DFINPDDEPNKSISELVKGITHG-  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~---~v~~~~~~~~~~~~~~i~~~~~~-  154 (269)
                      +++++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+    ++.+..   ...|-.+  .....+.+.+.... 
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTD--EEDVEATFAQIAEDF   80 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4788999986 9999999999988999 899999887665443    223432   1223222  12232323332221 


Q ss_pred             CCccEEEEccC
Q 024295          155 MGVDYCFECTG  165 (269)
Q Consensus       155 ~~~d~v~d~~g  165 (269)
                      .++|.+++++|
T Consensus        81 ~~id~vi~~ag   91 (253)
T PRK08217         81 GQLNGLINNAG   91 (253)
T ss_pred             CCCCEEEECCC
Confidence            27899999887

>PLN02244 tocopherol O-methyltransferase

Probab=96.65  E-value=0.0083  Score=51.34  Aligned_cols=97  Identities=19%  Similarity=0.305  Sum_probs=62.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      +++++||-+|+|. |..+..+++..|+ +|++++.+++..+.+++.    +...-+....   .+..+ + .. +...||
T Consensus       117 ~~~~~VLDiGCG~-G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~---~D~~~-~-~~-~~~~FD  188 (340)
T PLN02244        117 KRPKRIVDVGCGI-GGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQV---ADALN-Q-PF-EDGQFD  188 (340)
T ss_pred             CCCCeEEEecCCC-CHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---cCccc-C-CC-CCCCcc
Confidence            6789999999986 7788888888888 999999998877766542    3211011110   11100 0 11 223799


Q ss_pred             EEEEccC------ChhHHHHHHHHcccCCcEEEEEc
Q 024295          159 YCFECTG------VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       159 ~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +|+-.-.      ....+.++.+.+++| |+++...
T Consensus       189 ~V~s~~~~~h~~d~~~~l~e~~rvLkpG-G~lvi~~  223 (340)
T PLN02244        189 LVWSMESGEHMPDKRKFVQELARVAAPG-GRIIIVT  223 (340)
T ss_pred             EEEECCchhccCCHHHHHHHHHHHcCCC-cEEEEEE
Confidence            9975321      123578899999997 9998765

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=96.64  E-value=0.041  Score=43.37  Aligned_cols=99  Identities=18%  Similarity=0.170  Sum_probs=64.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      ++.+||-+|+|. |..+..+++.....++++++.+++..+.+++    .+...+ ....   .+..+.+........+|.
T Consensus        40 ~~~~VLDiGcGt-G~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v-~~~~---~d~~~~l~~~~~~~~~D~  114 (202)
T PRK00121         40 DAPIHLEIGFGK-GEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNL-RLLC---GDAVEVLLDMFPDGSLDR  114 (202)
T ss_pred             CCCeEEEEccCC-CHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCE-EEEe---cCHHHHHHHHcCccccce
Confidence            578899999987 8888888887644489999999988887754    232211 1111   333233332222337998


Q ss_pred             EEEccC--------------ChhHHHHHHHHcccCCcEEEEEc
Q 024295          160 CFECTG--------------VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       160 v~d~~g--------------~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      |+-...              .+..+..+.+.++++ |.++...
T Consensus       115 V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~l~i~~  156 (202)
T PRK00121        115 IYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPG-GEIHFAT  156 (202)
T ss_pred             EEEECCCCCCCccccccccCCHHHHHHHHHHcCCC-CEEEEEc
Confidence            874322              133578889999996 9998764

>PRK06841 short chain dehydrogenase; Provisional

Probab=96.64  E-value=0.012  Score=47.88  Aligned_cols=80  Identities=18%  Similarity=0.172  Sum_probs=51.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc----eeeCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT----DFINPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~----~v~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      +++++||+|+ |.+|...++.+...|+ +|+.++++++..+...+....    ...|-.+  +..+.+.+.+..+ -.++
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~~   90 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQLLGGNAKGLVCDVSD--SQSVEAAVAAVISAFGRI   90 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhhCCceEEEEecCCC--HHHHHHHHHHHHHHhCCC
Confidence            4689999986 8999999888888899 899999887655544443211    1123222  2223333332211 1278


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |+++.++|.
T Consensus        91 d~vi~~ag~   99 (255)
T PRK06841         91 DILVNSAGV   99 (255)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.63  E-value=0.0066  Score=54.04  Aligned_cols=94  Identities=12%  Similarity=0.134  Sum_probs=63.1

Q ss_pred             HhcCCCCCCeEE----EEc-CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc-eeeCCCCCCCccHHHHHHhh
Q 024295           78 KEAKVEKGSSVA----VLG-LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT-DFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        78 ~~~~~~~~~~vl----I~G-~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~  151 (269)
                      ...++++++.+|    |+| +|++|.+++|+++..|+ .|+++...+++....+..+.+ .+++...   ..+.+.+...
T Consensus        27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~l~~~  102 (450)
T PRK08261         27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTWAAGWGDRFGALVFDATG---ITDPADLKAL  102 (450)
T ss_pred             cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCccccccccCcCCcccEEEEECCC---CCCHHHHHHH
Confidence            456778888888    886 59999999999999999 999887665544333333433 4555544   3344444332


Q ss_pred             hCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          152 THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      .               ..+...++.+.++ |+++.++...
T Consensus       103 ~---------------~~~~~~l~~l~~~-griv~i~s~~  126 (450)
T PRK08261        103 Y---------------EFFHPVLRSLAPC-GRVVVLGRPP  126 (450)
T ss_pred             H---------------HHHHHHHHhccCC-CEEEEEcccc
Confidence            1               2456667778885 8888887654

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.62  E-value=0.061  Score=45.73  Aligned_cols=102  Identities=16%  Similarity=0.167  Sum_probs=66.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHH-HHHcCCCeEEEEcCCcchHHHHHh-----CCCceeeCCCCCCCccHHHHHHhhhCCCC
Q 024295           83 EKGSSVAVLGLGTVGLGAVDG-ARMHGAAKIIGIDKNPWKKEKGKA-----FGMTDFINPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~l-a~~~g~~~v~~~~~~~~~~~~~~~-----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      ...++++|+|+|..|...+.. +...+.++|.+.++++++.+.+.+     ++.. +...     .+..+.+      ..
T Consensus       125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~-~~~~-----~~~~~~~------~~  192 (325)
T PRK08618        125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE-IYVV-----NSADEAI------EE  192 (325)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc-EEEe-----CCHHHHH------hc
Confidence            356789999999999776654 445688899999999887765432     2332 1111     2233333      16


Q ss_pred             ccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchh
Q 024295          157 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNV  199 (269)
Q Consensus       157 ~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~  199 (269)
                      .|+|+.|++....+- . +.+++| -++..+|.......+++.
T Consensus       193 aDiVi~aT~s~~p~i-~-~~l~~G-~hV~~iGs~~p~~~E~~~  232 (325)
T PRK08618        193 ADIIVTVTNAKTPVF-S-EKLKKG-VHINAVGSFMPDMQELPS  232 (325)
T ss_pred             CCEEEEccCCCCcch-H-HhcCCC-cEEEecCCCCcccccCCH
Confidence            899999997664333 3 788996 888888876532334444

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.02  Score=45.57  Aligned_cols=77  Identities=21%  Similarity=0.284  Sum_probs=51.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc-eeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT-DFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      ++++|+|+ |.+|...++.+...|+ +|+.+++++++.+.++..+.. ...|-.+  ...+.+.+.+. .+.++|+++.+
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~-~~~~~d~vi~~   77 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQALGAEALALDVAD--PASVAGLAWKL-DGEALDAAVYV   77 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHhccceEEEecCCC--HHHHHHHHHHh-cCCCCCEEEEC
Confidence            46899985 8999999888777899 899999988777766665543 2233332  12233322233 23379999998


Q ss_pred             cCC
Q 024295          164 TGV  166 (269)
Q Consensus       164 ~g~  166 (269)
                      .|.
T Consensus        78 ag~   80 (222)
T PRK06953         78 AGV   80 (222)
T ss_pred             CCc
Confidence            764

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.60  E-value=0.017  Score=43.23  Aligned_cols=75  Identities=27%  Similarity=0.281  Sum_probs=50.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      .++.+++|+|+|.+|...++.+...|..+|+++++++++.+.+ ++++... +....   .+..+.+      .++|+|+
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~------~~~Dvvi   86 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG-IAIAY---LDLEELL------AEADLII   86 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc-cceee---cchhhcc------ccCCEEE
Confidence            4578899999999999999888888644899999988776654 4455321 00000   1111111      2789999


Q ss_pred             EccCCh
Q 024295          162 ECTGVP  167 (269)
Q Consensus       162 d~~g~~  167 (269)
                      .|++..
T Consensus        87 ~~~~~~   92 (155)
T cd01065          87 NTTPVG   92 (155)
T ss_pred             eCcCCC
Confidence            999754

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.016  Score=47.61  Aligned_cols=80  Identities=18%  Similarity=0.211  Sum_probs=51.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C----CCc-e--eeCCCCCCCccHHHHHHhhhCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F----GMT-D--FINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~----g~~-~--v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      +++++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+ +    +.. .  ..|-.+  +.+..+.+.+...-
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~i~~~~~~~~~~   83 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK--REDLERTVKELKNI   83 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC--HHHHHHHHHHHHhh
Confidence            4788999986 8999999999999999 89999998776654432 1    321 1  223222  23333333332221


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|+++++.|.
T Consensus        84 g~iD~lv~nag~   95 (263)
T PRK08339         84 GEPDIFFFSTGG   95 (263)
T ss_pred             CCCcEEEECCCC
Confidence            279999998874

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.57  E-value=0.017  Score=47.33  Aligned_cols=82  Identities=16%  Similarity=0.234  Sum_probs=52.0

Q ss_pred             CCCCCeEEEEcC-C-hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----CCCcee----eCCCCCCCccHHHHHHh
Q 024295           82 VEKGSSVAVLGL-G-TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-----FGMTDF----INPDDEPNKSISELVKG  150 (269)
Q Consensus        82 ~~~~~~vlI~G~-g-~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-----~g~~~v----~~~~~~~~~~~~~~i~~  150 (269)
                      +.+++++||+|+ | ++|.+.++.+...|+ +|+.+++++++.+...+     ++...+    .|..+  ++...+.+.+
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~   90 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS--EAQVDALIDA   90 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC--HHHHHHHHHH
Confidence            345789999986 6 799999999999999 89999888766554322     342221    23322  1223222322


Q ss_pred             hhC-CCCccEEEEccCC
Q 024295          151 ITH-GMGVDYCFECTGV  166 (269)
Q Consensus       151 ~~~-~~~~d~v~d~~g~  166 (269)
                      ... ..++|+++++.|.
T Consensus        91 ~~~~~g~id~li~~ag~  107 (262)
T PRK07831         91 AVERLGRLDVLVNNAGL  107 (262)
T ss_pred             HHHHcCCCCEEEECCCC
Confidence            211 1279999999974

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=96.57  E-value=0.054  Score=46.67  Aligned_cols=100  Identities=19%  Similarity=0.263  Sum_probs=62.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHc--CCCeEEEEc--CCcchHHH-HHhCCCceeeCCCCCCCccH--------------H
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMH--GAAKIIGID--KNPWKKEK-GKAFGMTDFINPDDEPNKSI--------------S  145 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~--g~~~v~~~~--~~~~~~~~-~~~~g~~~v~~~~~~~~~~~--------------~  145 (269)
                      ++|.|+|+ |++|..+++..+..  .+ +|++++  ++.++... ++++++..++-.++.....+              .
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f-~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~   80 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRF-RVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE   80 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCcccc-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence            57899995 99999999988765  45 777774  44444443 46688776554432000001              1


Q ss_pred             HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEc
Q 024295          146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       146 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +.+.++.....+|+|+.++++...+.-.+..++.  |+-+.+.
T Consensus        81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~a--GK~VaLA  121 (385)
T PRK05447         81 EGLCELAALPEADVVVAAIVGAAGLLPTLAAIRA--GKRIALA  121 (385)
T ss_pred             hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHC--CCcEEEe
Confidence            1222333334799999999876677778888877  4444443

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.56  E-value=0.015  Score=49.30  Aligned_cols=81  Identities=19%  Similarity=0.208  Sum_probs=52.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----CC-Cc---eeeCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-----FG-MT---DFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-----~g-~~---~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .|++++|+|+ |++|.+.+..+...|+ +|+.+++++++.+.+.+     .+ ..   ...|-.+ +..+..+.+.+..+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~l~~~~~  129 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG-DIDEGVKRIKETIE  129 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC-CcHHHHHHHHHHhc
Confidence            4789999996 8999998887777899 89999999887765422     22 11   1223221 11233444555444


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      +..+|++++++|.
T Consensus       130 ~~didilVnnAG~  142 (320)
T PLN02780        130 GLDVGVLINNVGV  142 (320)
T ss_pred             CCCccEEEEecCc
Confidence            4467799998863

>PRK08317 hypothetical protein; Provisional

Probab=96.56  E-value=0.033  Score=44.73  Aligned_cols=102  Identities=24%  Similarity=0.348  Sum_probs=68.3

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhC----CC-ceeeCCCCCCCccHHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKAF----GM-TDFINPDDEPNKSISELVK  149 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~~----g~-~~v~~~~~~~~~~~~~~i~  149 (269)
                      +.+...+.++.+||.+|+|. |..+..+++..+ ..++++++.+++..+.+++.    +. ..+...+.   ...     
T Consensus        11 ~~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~~-----   81 (241)
T PRK08317         11 TFELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA---DGL-----   81 (241)
T ss_pred             HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc---ccC-----
Confidence            34567788999999999987 888889998874 24899999998888877664    11 11221111   110     


Q ss_pred             hhhCCCCccEEEEcc------CChhHHHHHHHHcccCCcEEEEEc
Q 024295          150 GITHGMGVDYCFECT------GVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       150 ~~~~~~~~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .+.+ ..+|+|+-..      .....+..+.+.++++ |.++...
T Consensus        82 ~~~~-~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  124 (241)
T PRK08317         82 PFPD-GSFDAVRSDRVLQHLEDPARALAEIARVLRPG-GRVVVLD  124 (241)
T ss_pred             CCCC-CCceEEEEechhhccCCHHHHHHHHHHHhcCC-cEEEEEe
Confidence            1122 3789887432      2233678899999996 9988765

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.54  E-value=0.0056  Score=42.65  Aligned_cols=89  Identities=22%  Similarity=0.226  Sum_probs=58.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      ++++|||+|+|.+|..-++.+...|+ +|+++++..   +..++. ..+ . .     ..+.    +.  -.++++|+-+
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~---~~~~~~-i~~-~-~-----~~~~----~~--l~~~~lV~~a   67 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI---EFSEGL-IQL-I-R-----REFE----ED--LDGADLVFAA   67 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE---HHHHTS-CEE-E-E-----SS-G----GG--CTTESEEEE-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch---hhhhhH-HHH-H-h-----hhHH----HH--HhhheEEEec
Confidence            57899999999999999999999999 999998764   222211 111 1 1     2221    11  1279999999


Q ss_pred             cCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          164 TGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       164 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      ++.+..-+.+.+..+.. |..+...+.+
T Consensus        68 t~d~~~n~~i~~~a~~~-~i~vn~~D~p   94 (103)
T PF13241_consen   68 TDDPELNEAIYADARAR-GILVNVVDDP   94 (103)
T ss_dssp             SS-HHHHHHHHHHHHHT-TSEEEETT-C
T ss_pred             CCCHHHHHHHHHHHhhC-CEEEEECCCc
Confidence            98886666777777764 8888876544

>PRK07340 ornithine cyclodeaminase; Validated

Probab=96.54  E-value=0.021  Score=48.01  Aligned_cols=103  Identities=11%  Similarity=0.063  Sum_probs=67.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHH-cCCCeEEEEcCCcchHHHHH-hCCCc--eeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARM-HGAAKIIGIDKNPWKKEKGK-AFGMT--DFINPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~-~g~~~v~~~~~~~~~~~~~~-~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      ....+++|+|+|..|.+.+..+.. .+.++|.+.++++++.+.+. ++...  .+. .     .+..+.+.      +.|
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~-~-----~~~~~av~------~aD  190 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE-P-----LDGEAIPE------AVD  190 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE-E-----CCHHHHhh------cCC
Confidence            356889999999999888877764 67779999999988766543 34211  111 1     22333332      789


Q ss_pred             EEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhH
Q 024295          159 YCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVI  200 (269)
Q Consensus       159 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~  200 (269)
                      +|+.|+.++..+-..+  +++| -++..+|.......+++..
T Consensus       191 iVitaT~s~~Pl~~~~--~~~g-~hi~~iGs~~p~~~El~~~  229 (304)
T PRK07340        191 LVVTATTSRTPVYPEA--ARAG-RLVVAVGAFTPDMAELAPR  229 (304)
T ss_pred             EEEEccCCCCceeCcc--CCCC-CEEEecCCCCCCcccCCHH
Confidence            9999997654433333  7886 8888988765434455543

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.54  E-value=0.017  Score=48.39  Aligned_cols=80  Identities=18%  Similarity=0.175  Sum_probs=53.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCC--ce-e--eCCCCCCCccHHHHHHhhhC-CC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGM--TD-F--INPDDEPNKSISELVKGITH-GM  155 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~--~~-v--~~~~~~~~~~~~~~i~~~~~-~~  155 (269)
                      +++++||+|+ |++|.++++.+...|+ +|+.+++++++.+.+ ++++.  .. .  .|-.+  .++..+.+.+... -.
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g   84 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTD--LAAMQAAAEEAVERFG   84 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCC--HHHHHHHHHHHHHHcC
Confidence            5789999986 8999999999999999 899999988776654 33442  11 1  33332  1223233333221 12


Q ss_pred             CccEEEEccCC
Q 024295          156 GVDYCFECTGV  166 (269)
Q Consensus       156 ~~d~v~d~~g~  166 (269)
                      ++|++++++|.
T Consensus        85 ~id~vI~nAG~   95 (296)
T PRK05872         85 GIDVVVANAGI   95 (296)
T ss_pred             CCCEEEECCCc
Confidence            79999999874

>PRK06196 oxidoreductase; Provisional

Probab=96.54  E-value=0.016  Score=48.92  Aligned_cols=80  Identities=19%  Similarity=0.287  Sum_probs=51.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCC-Cce-eeCCCCCCCccHHHHHHhhhC-CCCcc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFG-MTD-FINPDDEPNKSISELVKGITH-GMGVD  158 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g-~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d  158 (269)
                      .++++||+|+ |.+|.+++..+...|+ +|+++++++++.+.+. ++. ... ..|-.+  .....+.+.+... ..++|
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d--~~~v~~~~~~~~~~~~~iD  101 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGIDGVEVVMLDLAD--LESVRAFAERFLDSGRRID  101 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhhCeEEEccCCC--HHHHHHHHHHHHhcCCCCC
Confidence            4688999986 8999999888888899 8999999877655432 222 221 123222  1223233333222 13799


Q ss_pred             EEEEccCC
Q 024295          159 YCFECTGV  166 (269)
Q Consensus       159 ~v~d~~g~  166 (269)
                      ++++++|.
T Consensus       102 ~li~nAg~  109 (315)
T PRK06196        102 ILINNAGV  109 (315)
T ss_pred             EEEECCCC
Confidence            99998873

>PRK12829 short chain dehydrogenase; Provisional

Probab=96.53  E-value=0.015  Score=47.55  Aligned_cols=81  Identities=16%  Similarity=0.146  Sum_probs=51.8

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCc--e--eeCCCCCCCccHHHHHHhhhC-CC
Q 024295           83 EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMT--D--FINPDDEPNKSISELVKGITH-GM  155 (269)
Q Consensus        83 ~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~--~--v~~~~~~~~~~~~~~i~~~~~-~~  155 (269)
                      -++.++||+|+ |.+|..+++.+...|+ +|++++++++..+.+.+ ....  .  ..|..+  +..+.+.+.+..+ -.
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   85 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGAKVTATVADVAD--PAQVERVFDTAVERFG   85 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCceEEEEccCCC--HHHHHHHHHHHHHHhC
Confidence            47789999986 9999999999988999 89999988766655433 2211  1  223322  1222222222211 12


Q ss_pred             CccEEEEccCC
Q 024295          156 GVDYCFECTGV  166 (269)
Q Consensus       156 ~~d~v~d~~g~  166 (269)
                      ++|+|+.++|.
T Consensus        86 ~~d~vi~~ag~   96 (264)
T PRK12829         86 GLDVLVNNAGI   96 (264)
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.53  E-value=0.016  Score=47.51  Aligned_cols=80  Identities=15%  Similarity=0.147  Sum_probs=52.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCc-ee--eCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMT-DF--INPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      +++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+.+ ++.. ..  .|-.+  ..+..+.+.+... -..+
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   81 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRFGDHVLVVEGDVTS--YADNQRAVDQTVDAFGKL   81 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC--HHHHHHHHHHHHHhcCCC
Confidence            4688999986 8999999998888999 89999998877666544 3321 12  22222  1223333333211 1279


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus        82 d~li~~ag~   90 (263)
T PRK06200         82 DCFVGNAGI   90 (263)
T ss_pred             CEEEECCCC
Confidence            999998873

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.53  E-value=0.016  Score=47.55  Aligned_cols=79  Identities=23%  Similarity=0.199  Sum_probs=51.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCc-eee--CCCCCCCccHHHHHHhhhCC-CCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMT-DFI--NPDDEPNKSISELVKGITHG-MGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~v~--~~~~~~~~~~~~~i~~~~~~-~~~  157 (269)
                      ++++++|+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+++ .+.. ..+  |..+  .....+.+.+.... ..+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   80 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEAAHGDAVVGVEGDVRS--LDDHKEAVARCVAAFGKI   80 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCceEEEEeccCC--HHHHHHHHHHHHHHhCCC
Confidence            4789999986 8999999998888999 99999988877666654 2321 112  2222  12233333332211 278


Q ss_pred             cEEEEccC
Q 024295          158 DYCFECTG  165 (269)
Q Consensus       158 d~v~d~~g  165 (269)
                      |+++++.|
T Consensus        81 d~li~~Ag   88 (262)
T TIGR03325        81 DCLIPNAG   88 (262)
T ss_pred             CEEEECCC
Confidence            99999886

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07574 formate dehydrogenase; Provisional

Probab=96.53  E-value=0.04  Score=47.79  Aligned_cols=90  Identities=20%  Similarity=0.282  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+++|.|+|.|.+|...++.++..|. +|++.+++....+..++++....        .++.+.+.      ..|+|+-+
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~~~~~~g~~~~--------~~l~ell~------~aDvV~l~  255 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELGLTYH--------VSFDSLVS------VCDVVTIH  255 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchhhHhhcCceec--------CCHHHHhh------cCCEEEEc
Confidence            46889999999999999999999999 99999987644443344443211        12222221      46777766


Q ss_pred             cCChhHH-----HHHHHHcccCCcEEEEEcc
Q 024295          164 TGVPSLL-----SEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       164 ~g~~~~~-----~~~~~~l~~~~G~~v~~g~  189 (269)
                      ....+..     ...+..++++ ..+|.++.
T Consensus       256 lPlt~~T~~li~~~~l~~mk~g-a~lIN~aR  285 (385)
T PRK07574        256 CPLHPETEHLFDADVLSRMKRG-SYLVNTAR  285 (385)
T ss_pred             CCCCHHHHHHhCHHHHhcCCCC-cEEEECCC
Confidence            6432221     2345566774 66666653

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.53  E-value=0.012  Score=46.32  Aligned_cols=35  Identities=29%  Similarity=0.421  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      +..+|+|+|+|++|...++.+...|..+++.+|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            45789999999999999998888999889999876

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.52  E-value=0.014  Score=47.36  Aligned_cols=80  Identities=20%  Similarity=0.196  Sum_probs=51.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CC--Cc-ee--eCCCCCCCccHHHHHHhhh-CCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FG--MT-DF--INPDDEPNKSISELVKGIT-HGM  155 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g--~~-~v--~~~~~~~~~~~~~~i~~~~-~~~  155 (269)
                      +++++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.. +.  .. ..  .|..+  +..+...+.+.. ...
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   80 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILAGGRAIAVAADVSD--EADVEAAVAAALERFG   80 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHhC
Confidence            4678999986 8999999888888899 89999999876654422 22  11 11  22222  233333333321 113


Q ss_pred             CccEEEEccCC
Q 024295          156 GVDYCFECTGV  166 (269)
Q Consensus       156 ~~d~v~d~~g~  166 (269)
                      .+|+++.+.|.
T Consensus        81 ~~d~vi~~ag~   91 (251)
T PRK07231         81 SVDILVNNAGT   91 (251)
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=96.51  E-value=0.032  Score=46.29  Aligned_cols=88  Identities=17%  Similarity=0.327  Sum_probs=56.8

Q ss_pred             eEEEEcCChhHHHH-HHHHHHcCCCeEEEE-cCCcch--HHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           87 SVAVLGLGTVGLGA-VDGARMHGAAKIIGI-DKNPWK--KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        87 ~vlI~G~g~~G~~a-~~la~~~g~~~v~~~-~~~~~~--~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      +|.|+|+|.+|... ..+.+..+. ++.++ +.++++  ++.++++|.....       .++...+.    ...+|+||+
T Consensus         3 rVAIIG~G~IG~~h~~~ll~~~~~-elvaV~d~d~es~~la~A~~~Gi~~~~-------~~~e~ll~----~~dIDaV~i   70 (285)
T TIGR03215         3 KVAIIGSGNIGTDLMYKLLRSEHL-EMVAMVGIDPESDGLARARELGVKTSA-------EGVDGLLA----NPDIDIVFD   70 (285)
T ss_pred             EEEEEeCcHHHHHHHHHHHhCCCc-EEEEEEeCCcccHHHHHHHHCCCCEEE-------CCHHHHhc----CCCCCEEEE
Confidence            58899999999754 566655566 55554 445544  4567778865433       22222222    237999999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEc
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +++...+.+.+...+..  |+.+..-
T Consensus        71 aTp~~~H~e~a~~al~a--Gk~VIde   94 (285)
T TIGR03215        71 ATSAKAHARHARLLAEL--GKIVIDL   94 (285)
T ss_pred             CCCcHHHHHHHHHHHHc--CCEEEEC
Confidence            99988777777777666  5555443

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.51  E-value=0.021  Score=49.76  Aligned_cols=91  Identities=22%  Similarity=0.281  Sum_probs=55.5

Q ss_pred             EEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh--CC--Cc-eeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           88 VAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA--FG--MT-DFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        88 vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~--~g--~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      |+|+|+|.+|..+++.+...+. .+|++.+++.++.+.+.+  .+  .. ..+|..+     .. .+.+...  +.|+|+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~-~l~~~~~--~~dvVi   72 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVND-----PE-SLAELLR--GCDVVI   72 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTT-----HH-HHHHHHT--TSSEEE
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCC-----HH-HHHHHHh--cCCEEE
Confidence            6899999999999998887654 389999999998777654  22  22 2333322     22 2444433  569999


Q ss_pred             EccCChhHHHHHHHHcccCCcEEEEE
Q 024295          162 ECTGVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      +|+|.......+-.++..| -+++..
T Consensus        73 n~~gp~~~~~v~~~~i~~g-~~yvD~   97 (386)
T PF03435_consen   73 NCAGPFFGEPVARACIEAG-VHYVDT   97 (386)
T ss_dssp             E-SSGGGHHHHHHHHHHHT--EEEES
T ss_pred             ECCccchhHHHHHHHHHhC-CCeecc
Confidence            9998764444444455664 677773

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.49  E-value=0.039  Score=45.34  Aligned_cols=35  Identities=29%  Similarity=0.425  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      .+.+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46789999999999999999999998899999854

>PLN00203 glutamyl-tRNA reductase

Probab=96.49  E-value=0.017  Score=52.08  Aligned_cols=98  Identities=18%  Similarity=0.234  Sum_probs=63.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CC-Cce-eeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FG-MTD-FINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g-~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      .+.+|+|+|+|.+|.+++..+...|+++|+++.++.++.+.+.+ ++ ... +...     .+..+.+      ...|+|
T Consensus       265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~-----~dl~~al------~~aDVV  333 (519)
T PLN00203        265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPL-----DEMLACA------AEADVV  333 (519)
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecH-----hhHHHHH------hcCCEE
Confidence            36899999999999999999999998789999999888776644 53 221 1111     1222222      178999


Q ss_pred             EEccCChhH--HHHHHHHcccC---Cc---EEEEEccCCC
Q 024295          161 FECTGVPSL--LSEALETTKVG---KG---KVIVIGVGVD  192 (269)
Q Consensus       161 ~d~~g~~~~--~~~~~~~l~~~---~G---~~v~~g~~~~  192 (269)
                      |.|++.+..  ....++.+.++   .+   .++.++.|..
T Consensus       334 IsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRd  373 (519)
T PLN00203        334 FTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRN  373 (519)
T ss_pred             EEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCC
Confidence            999875432  33444443221   02   4666666553

>PRK06500 short chain dehydrogenase; Provisional

Probab=96.49  E-value=0.017  Score=46.75  Aligned_cols=80  Identities=20%  Similarity=0.302  Sum_probs=51.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCce-ee--CCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTD-FI--NPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      ++++++|+|+ |.+|...++.+...|+ +|+.+++++++.+.+ ++++... .+  |..+  ..+..+.+..... ..++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~i   81 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGESALVIRADAGD--VAAQKALAQALAEAFGRL   81 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCCceEEEEecCCC--HHHHHHHHHHHHHHhCCC
Confidence            4678999986 9999999999999999 899999887665544 3355321 12  2221  1222222222211 1279


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus        82 d~vi~~ag~   90 (249)
T PRK06500         82 DAVFINAGV   90 (249)
T ss_pred             CEEEECCCC
Confidence            999998864

>PRK07904 short chain dehydrogenase; Provisional

Probab=96.49  E-value=0.029  Score=45.83  Aligned_cols=82  Identities=20%  Similarity=0.249  Sum_probs=49.4

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHc-CCCeEEEEcCCcch-HHH----HHhCCC--ceee--CCCCCCCccHHHHHHh
Q 024295           82 VEKGSSVAVLGL-GTVGLGAVDGARMH-GAAKIIGIDKNPWK-KEK----GKAFGM--TDFI--NPDDEPNKSISELVKG  150 (269)
Q Consensus        82 ~~~~~~vlI~G~-g~~G~~a~~la~~~-g~~~v~~~~~~~~~-~~~----~~~~g~--~~v~--~~~~~~~~~~~~~i~~  150 (269)
                      +-.++++||+|+ |++|.+.++-+... |+ +|+.+++++++ .+.    ++..+.  .+++  |..+  ..+..+.+.+
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~--~~~~~~~~~~   81 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALD--TDSHPKVIDA   81 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCC--hHHHHHHHHH
Confidence            345688999986 89999988776666 47 99999988765 332    233332  1222  3222  2333333333


Q ss_pred             hhCCCCccEEEEccCC
Q 024295          151 ITHGMGVDYCFECTGV  166 (269)
Q Consensus       151 ~~~~~~~d~v~d~~g~  166 (269)
                      .....++|+++.+.|.
T Consensus        82 ~~~~g~id~li~~ag~   97 (253)
T PRK07904         82 AFAGGDVDVAIVAFGL   97 (253)
T ss_pred             HHhcCCCCEEEEeeec
Confidence            3222379999887754

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.48  E-value=0.027  Score=47.08  Aligned_cols=36  Identities=22%  Similarity=0.336  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      ++++++|+|+|++|.+++..+...|+++|+.+.|++
T Consensus       125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            468899999999999998888889997799999886

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=96.48  E-value=0.031  Score=46.31  Aligned_cols=99  Identities=14%  Similarity=0.131  Sum_probs=67.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCce--eeCCCCC-CCccHHHHHHhhhCCCCccEEE
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTD--FINPDDE-PNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~--v~~~~~~-~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      ++|||+|.|. |..+-.++|+...+++++++-+++-.+.+++ ++..+  ..|.+-. -.+|-.+-+++.. . +||+|+
T Consensus        78 k~VLiiGgGd-G~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~-~-~fDvIi  154 (282)
T COG0421          78 KRVLIIGGGD-GGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE-E-KFDVII  154 (282)
T ss_pred             CeEEEECCCc-cHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC-C-cCCEEE
Confidence            6999998765 7777788898888899999999999998887 33111  1112110 0134444444432 3 899886


Q ss_pred             -EccCC---------hhHHHHHHHHcccCCcEEEEEc
Q 024295          162 -ECTGV---------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       162 -d~~g~---------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                       |++..         ...++.+-+.|+++ |.++.-.
T Consensus       155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~-Gi~v~q~  190 (282)
T COG0421         155 VDSTDPVGPAEALFTEEFYEGCRRALKED-GIFVAQA  190 (282)
T ss_pred             EcCCCCCCcccccCCHHHHHHHHHhcCCC-cEEEEec
Confidence             66643         33578889999996 9988773

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.47  E-value=0.016  Score=48.54  Aligned_cols=80  Identities=18%  Similarity=0.242  Sum_probs=50.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-eee--CCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DFI--NPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v~--~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+    .+.+ ..+  |-.+  .+.+.+.+.+... -
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~~  115 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSD--LDAVDALVADVEKRI  115 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            3578999986 8999999998888899 99999998876654432    2322 122  2222  1223222322211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus       116 g~id~li~~AG~  127 (293)
T PRK05866        116 GGVDILINNAGR  127 (293)
T ss_pred             CCCCEEEECCCC
Confidence            279999999874

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.46  E-value=0.021  Score=53.41  Aligned_cols=76  Identities=25%  Similarity=0.332  Sum_probs=52.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcc---------------------hHHHHHhCCCceeeCCCCCCCc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW---------------------KKEKGKAFGMTDFINPDDEPNK  142 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~---------------------~~~~~~~~g~~~v~~~~~~~~~  142 (269)
                      .+++|+|+|+|+.|++++..++..|+ +|+++++.+.                     ..+.++++|.+...+..-..+-
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i  404 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI  404 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence            57899999999999999999999999 8999986542                     3445666776544443210001


Q ss_pred             cHHHHHHhhhCCCCccEEEEccCC
Q 024295          143 SISELVKGITHGMGVDYCFECTGV  166 (269)
Q Consensus       143 ~~~~~i~~~~~~~~~d~v~d~~g~  166 (269)
                      .. +.+.     .++|.||.++|.
T Consensus       405 ~~-~~~~-----~~~DavilAtGa  422 (654)
T PRK12769        405 SL-ESLL-----EDYDAVFVGVGT  422 (654)
T ss_pred             CH-HHHH-----hcCCEEEEeCCC
Confidence            11 1111     279999999885

>PRK07814 short chain dehydrogenase; Provisional

Probab=96.45  E-value=0.016  Score=47.47  Aligned_cols=79  Identities=11%  Similarity=0.064  Sum_probs=50.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-ee--eCCCCCCCccHHH-HHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DF--INPDDEPNKSISE-LVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v--~~~~~~~~~~~~~-~i~~~~~-  153 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.+    .+.. .+  .|..+   .+..+ .+.+... 
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~   84 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAH---PEATAGLAGQAVEA   84 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC---HHHHHHHHHHHHHH
Confidence            5789999986 8999999998888999 99999998766554322    2321 22  23332   33222 2222211 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      -.++|++++++|.
T Consensus        85 ~~~id~vi~~Ag~   97 (263)
T PRK07814         85 FGRLDIVVNNVGG   97 (263)
T ss_pred             cCCCCEEEECCCC
Confidence            1279999998863

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.45  E-value=0.021  Score=45.81  Aligned_cols=80  Identities=19%  Similarity=0.171  Sum_probs=49.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHH-HH---hCCCcee-eCCCCCCCccHHHHHHhhhCC-CC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEK-GK---AFGMTDF-INPDDEPNKSISELVKGITHG-MG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~-~~---~~g~~~v-~~~~~~~~~~~~~~i~~~~~~-~~  156 (269)
                      +++++||+|+ |.+|..+++.+...|+ +|+.+++++++... ++   ..+...+ .|..+  ..++.+.+.+.... .+
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~   82 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAPLSQTLPGVPADALRIGGIDLVD--PQAARRAVDEVNRQFGR   82 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHhHHHHHHHHhhcCceEEEeecCC--HHHHHHHHHHHHHHhCC
Confidence            4789999986 9999999988888899 89999987755332 22   2232221 22222  12222222222211 27


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|+++++.+.
T Consensus        83 ~d~vi~~ag~   92 (239)
T PRK12828         83 LDALVNIAGA   92 (239)
T ss_pred             cCEEEECCcc
Confidence            9999998763

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.42  E-value=0.034  Score=44.74  Aligned_cols=35  Identities=37%  Similarity=0.504  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      .+.+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus        10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755          10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            35789999999999999999999999899999854

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK09072 short chain dehydrogenase; Provisional

Probab=96.42  E-value=0.025  Score=46.35  Aligned_cols=80  Identities=18%  Similarity=0.258  Sum_probs=50.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C--CC-ceee--CCCCCCCccHHHHHHhhhCCCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F--GM-TDFI--NPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~--g~-~~v~--~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      +++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.. +  +. .+.+  |-.+  .....+.+........
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~~   80 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTS--EAGREAVLARAREMGG   80 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHhcCC
Confidence            4678999986 8999999888888899 89999998876655432 2  21 1122  2222  1222222222211237


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|+++.++|.
T Consensus        81 id~lv~~ag~   90 (263)
T PRK09072         81 INVLINNAGV   90 (263)
T ss_pred             CCEEEECCCC
Confidence            8999998874

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.41  E-value=0.019  Score=43.81  Aligned_cols=93  Identities=20%  Similarity=0.327  Sum_probs=61.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC--ceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM--TDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      +|.|+|+ |-+|....+=|+..|. .|+++.|++.|....+..-.  ..+++..     ...+.+      .++|+|+++
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGH-eVTAivRn~~K~~~~~~~~i~q~Difd~~-----~~a~~l------~g~DaVIsA   69 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGH-EVTAIVRNASKLAARQGVTILQKDIFDLT-----SLASDL------AGHDAVISA   69 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCC-eeEEEEeChHhccccccceeecccccChh-----hhHhhh------cCCceEEEe
Confidence            5789986 9999999999999999 99999999988765422210  1133221     111222      289999999


Q ss_pred             cCChh---------HHHHHHHHccc-CCcEEEEEccCC
Q 024295          164 TGVPS---------LLSEALETTKV-GKGKVIVIGVGV  191 (269)
Q Consensus       164 ~g~~~---------~~~~~~~~l~~-~~G~~v~~g~~~  191 (269)
                      .+...         ..+.++..++. +.-+++.+|...
T Consensus        70 ~~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAG  107 (211)
T COG2910          70 FGAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAG  107 (211)
T ss_pred             ccCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence            97641         23345666665 224788887654

>PRK06180 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.021  Score=47.26  Aligned_cols=80  Identities=14%  Similarity=0.169  Sum_probs=51.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC-Cc-e--eeCCCCCCCccHHHHHHhhhCC-CCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG-MT-D--FINPDDEPNKSISELVKGITHG-MGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g-~~-~--v~~~~~~~~~~~~~~i~~~~~~-~~~  157 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+.. .. .  ..|..+  .+...+.+.+.... .++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~~~~   79 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEALHPDRALARLLDVTD--FDAIDAVVADAEATFGPI   79 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhhcCCCeeEEEccCCC--HHHHHHHHHHHHHHhCCC
Confidence            3578999986 9999999998888899 8999999888776655432 11 1  123322  12233333322111 268


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |+++++.|.
T Consensus        80 d~vv~~ag~   88 (277)
T PRK06180         80 DVLVNNAGY   88 (277)
T ss_pred             CEEEECCCc
Confidence            999999875

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.40  E-value=0.022  Score=47.03  Aligned_cols=80  Identities=13%  Similarity=0.268  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCC---hhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCceee--CCCCCCCccHHHHHHhhhCC
Q 024295           84 KGSSVAVLGLG---TVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTDFI--NPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        84 ~~~~vlI~G~g---~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v~--~~~~~~~~~~~~~i~~~~~~  154 (269)
                      +++++||+|++   ++|.+.++.+...|+ +|+.++++++..+.+    ++.|....+  |-.+  .++..+.+.+....
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d--~~~v~~~~~~~~~~   82 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGSDFVLPCDVED--IASVDAVFEALEKK   82 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCCceEEeCCCCC--HHHHHHHHHHHHHH
Confidence            56889999874   899999988888999 888888765322222    234533222  3222  12233333332211


Q ss_pred             -CCccEEEEccCC
Q 024295          155 -MGVDYCFECTGV  166 (269)
Q Consensus       155 -~~~d~v~d~~g~  166 (269)
                       ..+|++++++|.
T Consensus        83 ~g~iD~lVnnAG~   95 (271)
T PRK06505         83 WGKLDFVVHAIGF   95 (271)
T ss_pred             hCCCCEEEECCcc
Confidence             279999998873

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.37  E-value=0.016  Score=45.70  Aligned_cols=92  Identities=15%  Similarity=0.082  Sum_probs=54.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcc-hHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW-KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      .+++|||+|+|.+|...+..+...|+ +|+++.+... ....+.+.+.- .+....     +.+.  .+   .++|+|+-
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~~~~~l~~l~~~~~i-~~~~~~-----~~~~--~l---~~adlVia   76 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPELTENLVKLVEEGKI-RWKQKE-----FEPS--DI---VDAFLVIA   76 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCCCHHHHHHHhCCCE-EEEecC-----CChh--hc---CCceEEEE
Confidence            57899999999999998888888898 8888875431 11222122211 111111     1110  11   27899999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEcc
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      +++.+.. +..+...+.. +.++...+
T Consensus        77 aT~d~el-N~~i~~~a~~-~~lvn~~d  101 (202)
T PRK06718         77 ATNDPRV-NEQVKEDLPE-NALFNVIT  101 (202)
T ss_pred             cCCCHHH-HHHHHHHHHh-CCcEEECC
Confidence            9988744 4444433343 55555543

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.37  E-value=0.043  Score=44.90  Aligned_cols=93  Identities=20%  Similarity=0.255  Sum_probs=61.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCc---eeeCCCCCCCccHHHHHHhhhCCC
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMT---DFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      .++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++.    |..   .++.      .+..+ +....+ .
T Consensus        43 ~~~~~vLDiGcG~-G~~a~~la~~-g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~------~d~~~-l~~~~~-~  111 (255)
T PRK11036         43 PRPLRVLDAGGGE-GQTAIKLAEL-GH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIH------CAAQD-IAQHLE-T  111 (255)
T ss_pred             CCCCEEEEeCCCc-hHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEE------cCHHH-HhhhcC-C
Confidence            4567899999886 8888888875 77 999999999888877652    321   1221      12211 212222 3


Q ss_pred             CccEEEEcc-----CC-hhHHHHHHHHcccCCcEEEEE
Q 024295          156 GVDYCFECT-----GV-PSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       156 ~~d~v~d~~-----g~-~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      .||+|+-..     .. ...+..+.+.+++| |.++.+
T Consensus       112 ~fD~V~~~~vl~~~~~~~~~l~~~~~~Lkpg-G~l~i~  148 (255)
T PRK11036        112 PVDLILFHAVLEWVADPKSVLQTLWSVLRPG-GALSLM  148 (255)
T ss_pred             CCCEEEehhHHHhhCCHHHHHHHHHHHcCCC-eEEEEE
Confidence            799997432     22 23578899999997 998765

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.36  E-value=0.084  Score=42.07  Aligned_cols=77  Identities=26%  Similarity=0.284  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc----------chHHHHHhCCCceeeCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP----------WKKEKGKAFGMTDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~----------~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      ++.+|+|.|.|.+|+.+++++...|.+.|.+.|.+.          +..+..++.+....+...+   .-..+.+.    
T Consensus        22 ~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~---~~~~~~l~----   94 (217)
T cd05211          22 EGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQD---YFPGEAIL----   94 (217)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCccc---ccCcccce----
Confidence            689999999999999999999999995556666665          5555555544211111100   00001121    


Q ss_pred             CCCccEEEEccCCh
Q 024295          154 GMGVDYCFECTGVP  167 (269)
Q Consensus       154 ~~~~d~v~d~~g~~  167 (269)
                      ..++|+++.|+...
T Consensus        95 ~~~~DVlipaA~~~  108 (217)
T cd05211          95 GLDVDIFAPCALGN  108 (217)
T ss_pred             eccccEEeeccccC
Confidence            12789999888654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.36  E-value=0.021  Score=46.43  Aligned_cols=80  Identities=15%  Similarity=0.152  Sum_probs=51.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCce---eeCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTD---FINPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~---v~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.+    .+...   ..|..+  ++...+.+.+... -
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   84 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQ--HQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            4789999986 8999999999888999 89999988776654432    23221   223322  2233333332211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|+++++.|.
T Consensus        85 g~id~lv~~ag~   96 (253)
T PRK05867         85 GGIDIAVCNAGI   96 (253)
T ss_pred             CCCCEEEECCCC
Confidence            279999998863

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=96.34  E-value=0.059  Score=42.84  Aligned_cols=104  Identities=16%  Similarity=0.163  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCceee------C-CCCCCCccHHHHHHhhh-
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDFI------N-PDDEPNKSISELVKGIT-  152 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v~------~-~~~~~~~~~~~~i~~~~-  152 (269)
                      +.++.+||+.|+|. |.-++.+|. .|. .|++++.++.-.+.+ ++.+.....      . +......-....+.++. 
T Consensus        32 ~~~~~rvLd~GCG~-G~da~~LA~-~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~  108 (213)
T TIGR03840        32 LPAGARVFVPLCGK-SLDLAWLAE-QGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA  108 (213)
T ss_pred             CCCCCeEEEeCCCc-hhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence            35778999999986 888888886 599 999999998877764 223221000      0 00000000000011111 


Q ss_pred             -CCCCccEEEEccCC--------hhHHHHHHHHcccCCcEEEEEcc
Q 024295          153 -HGMGVDYCFECTGV--------PSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       153 -~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                       ....||.++|..--        +..++.+.+.|++| |++++++.
T Consensus       109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg-G~~ll~~~  153 (213)
T TIGR03840       109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG-ARQLLITL  153 (213)
T ss_pred             ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC-CeEEEEEE
Confidence             01268999996531        22577899999996 98766654

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=96.33  E-value=0.078  Score=43.61  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=67.0

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhCC-------Cc--eeeCCCCCCCccHHHH
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKAFG-------MT--DFINPDDEPNKSISEL  147 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~~g-------~~--~v~~~~~~~~~~~~~~  147 (269)
                      ....++++++||-+|+|+ |..+..+++..+. .+|+++|.+++..+.+++..       ..  .++..+.   .++   
T Consensus        67 ~~~~~~~~~~VLDlGcGt-G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~---~~l---  139 (261)
T PLN02233         67 SWSGAKMGDRVLDLCCGS-GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA---TDL---  139 (261)
T ss_pred             HHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc---ccC---
Confidence            345677899999999876 7777788887653 38999999998888876421       11  1111110   110   


Q ss_pred             HHhhhCCCCccEEEEccC------ChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          148 VKGITHGMGVDYCFECTG------VPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       148 i~~~~~~~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                        . .++..||.|+-..+      -...+.++.+.|+|| |+++.+....
T Consensus       140 --p-~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpG-G~l~i~d~~~  185 (261)
T PLN02233        140 --P-FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPG-SRVSILDFNK  185 (261)
T ss_pred             --C-CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcC-cEEEEEECCC
Confidence              0 12237998864321      133588999999997 9998875443

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=96.32  E-value=0.049  Score=48.18  Aligned_cols=102  Identities=12%  Similarity=0.186  Sum_probs=65.4

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-ee--eCCCCCCCccHHHHHHh
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DF--INPDDEPNKSISELVKG  150 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v--~~~~~~~~~~~~~~i~~  150 (269)
                      .....+++++||-+|+|+ |..+..+++..+..+|++++.++++.+.+++    +|.. .+  .+.+.   ...    ..
T Consensus       232 ~~L~~~~g~~VLDlcag~-G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~---~~~----~~  303 (426)
T TIGR00563       232 TWLAPQNEETILDACAAP-GGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG---RGP----SQ  303 (426)
T ss_pred             HHhCCCCCCeEEEeCCCc-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc---ccc----cc
Confidence            445778899999999876 6666677776653399999999988876643    5644 22  22111   111    00


Q ss_pred             hhCCCCccEEE-E--ccCC-------------------------hhHHHHHHHHcccCCcEEEEEc
Q 024295          151 ITHGMGVDYCF-E--CTGV-------------------------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       151 ~~~~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +.....||.|| |  |+|.                         ...+..+++.+++| |+++..-
T Consensus       304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg-G~lvyst  368 (426)
T TIGR00563       304 WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG-GTLVYAT  368 (426)
T ss_pred             cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEe
Confidence            11223799887 4  4432                         12567788899997 9998764

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK09291 short chain dehydrogenase; Provisional

Probab=96.31  E-value=0.027  Score=45.88  Aligned_cols=73  Identities=14%  Similarity=0.097  Sum_probs=48.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-ee--eCCCCCCCccHHHHHHhhhCCCC
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DF--INPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v--~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      ++++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+++    .+.. .+  .|..+   .   +.+.+...+ +
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~---~~~~~~~~~-~   73 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTD---A---IDRAQAAEW-D   73 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCC---H---HHHHHHhcC-C
Confidence            457999986 8999999999999999 99999988765554432    2321 11  23222   2   123332233 7


Q ss_pred             ccEEEEccC
Q 024295          157 VDYCFECTG  165 (269)
Q Consensus       157 ~d~v~d~~g  165 (269)
                      +|++|++.|
T Consensus        74 id~vi~~ag   82 (257)
T PRK09291         74 VDVLLNNAG   82 (257)
T ss_pred             CCEEEECCC
Confidence            999999887

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.30  E-value=0.026  Score=47.75  Aligned_cols=95  Identities=19%  Similarity=0.187  Sum_probs=59.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      +|||+|+ |-+|..++..+...|. +|.+++|+.++...+...+.+.+. |..+  +..+.+.+    .  ++|+||+++
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d--~~~l~~al----~--g~d~Vi~~~   72 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFLKEWGAELVYGDLSL--PETLPPSF----K--GVTAIIDAS   72 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhHhhcCCEEEECCCCC--HHHHHHHH----C--CCCEEEECC
Confidence            6899986 9999999998888898 899999887665555555654333 2222  12222222    2  689999987


Q ss_pred             CChh------------HHHHHHHHcccC-CcEEEEEccC
Q 024295          165 GVPS------------LLSEALETTKVG-KGKVIVIGVG  190 (269)
Q Consensus       165 g~~~------------~~~~~~~~l~~~-~G~~v~~g~~  190 (269)
                      +...            ....+++.++.. -.+++.++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~  111 (317)
T CHL00194         73 TSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL  111 (317)
T ss_pred             CCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence            5321            112344544442 1378877653

>PRK01581 speE spermidine synthase; Validated

Probab=96.29  E-value=0.1  Score=44.66  Aligned_cols=104  Identities=12%  Similarity=0.021  Sum_probs=64.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC-----ceeeCCCCC--CCccHHHHHHhhhCC
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM-----TDFINPDDE--PNKSISELVKGITHG  154 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~-----~~v~~~~~~--~~~~~~~~i~~~~~~  154 (269)
                      ....++|||+|+|. |.++..+++..+.++|++++.+++-.+.++++..     ...++....  -..+..+.+.+ .+ 
T Consensus       148 h~~PkrVLIIGgGd-G~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-~~-  224 (374)
T PRK01581        148 VIDPKRVLILGGGD-GLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-PS-  224 (374)
T ss_pred             CCCCCEEEEECCCH-HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-cC-
Confidence            34457999999764 7778888887666699999999998888886210     000100000  01333344433 23 


Q ss_pred             CCccEEEEccCC-----------hhHHHHHHHHcccCCcEEEEEcc
Q 024295          155 MGVDYCFECTGV-----------PSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       155 ~~~d~v~d~~g~-----------~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      ..||+||--...           ...+..+.+.|+++ |.++.-..
T Consensus       225 ~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg-GV~V~Qs~  269 (374)
T PRK01581        225 SLYDVIIIDFPDPATELLSTLYTSELFARIATFLTED-GAFVCQSN  269 (374)
T ss_pred             CCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCC-cEEEEecC
Confidence            379988743221           12467888899996 99877643

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=96.29  E-value=0.024  Score=42.29  Aligned_cols=99  Identities=22%  Similarity=0.266  Sum_probs=63.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCC---CCCccHHHHHHhhhCCCCccEEE
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDD---EPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~---~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      .+|+|+|. |++|.+.++..|..++ -|..++.++....     ....+++...   ..++...+++.+...+.++|.||
T Consensus         4 grVivYGGkGALGSacv~~Fkanny-wV~siDl~eNe~A-----d~sI~V~~~~swtEQe~~v~~~vg~sL~gekvDav~   77 (236)
T KOG4022|consen    4 GRVIVYGGKGALGSACVEFFKANNY-WVLSIDLSENEQA-----DSSILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAVF   77 (236)
T ss_pred             ceEEEEcCcchHhHHHHHHHHhcCe-EEEEEeecccccc-----cceEEecCCcchhHHHHHHHHHHHHhhcccccceEE
Confidence            57899986 9999999999999999 8888886653322     1223333321   01133444455555677999999


Q ss_pred             EccCC----hh----------------------HHHHHHHHcccCCcEEEEEccCC
Q 024295          162 ECTGV----PS----------------------LLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       162 d~~g~----~~----------------------~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      -..|+    ..                      ....+-..+++| |-+-+.|...
T Consensus        78 CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~G-GLL~LtGAka  132 (236)
T KOG4022|consen   78 CVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPG-GLLQLTGAKA  132 (236)
T ss_pred             EeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCC-ceeeeccccc
Confidence            77654    10                      123344578896 8888777543

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.29  E-value=0.023  Score=46.25  Aligned_cols=79  Identities=15%  Similarity=0.139  Sum_probs=50.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC-ceee--CCCCCCCccHHHHHHhhhC-CC
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM-TDFI--NPDDEPNKSISELVKGITH-GM  155 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~v~--~~~~~~~~~~~~~i~~~~~-~~  155 (269)
                      ++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+    .+. ...+  |-.+  ++.+.+.+.+... -.
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   77 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRN--PEDVQKMVEQIDEKFG   77 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHhC
Confidence            468999986 8999999999998999 99999988766554432    222 1222  2222  1233332322211 12


Q ss_pred             CccEEEEccCC
Q 024295          156 GVDYCFECTGV  166 (269)
Q Consensus       156 ~~d~v~d~~g~  166 (269)
                      ++|+++++.|.
T Consensus        78 ~id~lI~~ag~   88 (252)
T PRK07677         78 RIDALINNAAG   88 (252)
T ss_pred             CccEEEECCCC
Confidence            68999998863

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.28  E-value=0.039  Score=44.63  Aligned_cols=80  Identities=23%  Similarity=0.290  Sum_probs=50.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhCCCc-ee--eCCCCCCCccHHHHHHhhhC-CCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW--KKEKGKAFGMT-DF--INPDDEPNKSISELVKGITH-GMG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~--~~~~~~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~  156 (269)
                      +++++||+|+ |.+|.+.+..+...|+ +|+.+++++.  ..+.+++.+.. ..  .|..+  .+++...+.+... -.+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~   80 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEPSETQQQVEALGRRFLSLTADLSD--IEAIKALVDSAVEEFGH   80 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHHcCC
Confidence            5789999986 8999999888888899 9999987652  12233444422 12  23222  2333333333221 126


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|++++++|.
T Consensus        81 ~d~li~~ag~   90 (248)
T TIGR01832        81 IDILVNNAGI   90 (248)
T ss_pred             CCEEEECCCC
Confidence            9999998864

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.28  E-value=0.033  Score=45.29  Aligned_cols=35  Identities=29%  Similarity=0.404  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      ...+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            45789999999999999999999999899888754

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.28  E-value=0.043  Score=47.71  Aligned_cols=101  Identities=20%  Similarity=0.185  Sum_probs=67.3

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      ..--.+.++||+|+|-+|..++..+...|.++|++..|+.++... ++++|+. ++..+         ++.+..+  .+|
T Consensus       173 ~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~-~~~l~---------el~~~l~--~~D  240 (414)
T COG0373         173 FGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAE-AVALE---------ELLEALA--EAD  240 (414)
T ss_pred             hcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCe-eecHH---------HHHHhhh--hCC
Confidence            333478999999999999999999999998899999999887775 5668844 22221         2222221  789


Q ss_pred             EEEEccCChhH---HHHHHHHcccCCc-EEEEEccCCC
Q 024295          159 YCFECTGVPSL---LSEALETTKVGKG-KVIVIGVGVD  192 (269)
Q Consensus       159 ~v~d~~g~~~~---~~~~~~~l~~~~G-~~v~~g~~~~  192 (269)
                      +||-+++.+..   -....+.++.... -++.++.|..
T Consensus       241 vVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRd  278 (414)
T COG0373         241 VVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRD  278 (414)
T ss_pred             EEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCC
Confidence            99999987642   2233334443223 4566666553

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.28  E-value=0.055  Score=43.52  Aligned_cols=35  Identities=29%  Similarity=0.384  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      ...+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus        20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            35789999999999999999999999899888744

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=96.28  E-value=0.052  Score=45.28  Aligned_cols=91  Identities=16%  Similarity=0.224  Sum_probs=55.0

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHcCCCeEEEE-cCCcc--hHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           86 SSVAVLGLGTVGLG-AVDGARMHGAAKIIGI-DKNPW--KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        86 ~~vlI~G~g~~G~~-a~~la~~~g~~~v~~~-~~~~~--~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      -++.|+|+|.+|.. +..+.+.-+. ++.++ +.+++  .++.++++|....+       .++.+.+.. ..-.++|+||
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~~~v-elvAVvdid~es~gla~A~~~Gi~~~~-------~~ie~LL~~-~~~~dIDiVf   75 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRSEHL-EPGAMVGIDPESDGLARARRLGVATSA-------EGIDGLLAM-PEFDDIDIVF   75 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcCCCc-EEEEEEeCChhhHHHHHHHHcCCCccc-------CCHHHHHhC-cCCCCCCEEE
Confidence            46899999999986 4455554456 55544 44443  34567778754322       223333321 1113799999


Q ss_pred             EccCChhHHHHHHHHcccCCcEEEEE
Q 024295          162 ECTGVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      ++++...+.+.+......  |+.+..
T Consensus        76 ~AT~a~~H~e~a~~a~ea--Gk~VID   99 (302)
T PRK08300         76 DATSAGAHVRHAAKLREA--GIRAID   99 (302)
T ss_pred             ECCCHHHHHHHHHHHHHc--CCeEEE
Confidence            999988776666666666  444443

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.27  E-value=0.1  Score=37.03  Aligned_cols=90  Identities=19%  Similarity=0.311  Sum_probs=60.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHc--CCCeEE-EEcCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           87 SVAVLGLGTVGLGAVDGARMH--GAAKII-GIDKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~--g~~~v~-~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      ++.|+|.|..|..-...++..  +. +++ +.++++++.+. .+++|.. .+       .++.+.+.+    ..+|+|+-
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~-~v~~v~d~~~~~~~~~~~~~~~~-~~-------~~~~~ll~~----~~~D~V~I   68 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDF-EVVAVCDPDPERAEAFAEKYGIP-VY-------TDLEELLAD----EDVDAVII   68 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTE-EEEEEECSSHHHHHHHHHHTTSE-EE-------SSHHHHHHH----TTESEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCc-EEEEEEeCCHHHHHHHHHHhccc-ch-------hHHHHHHHh----hcCCEEEE
Confidence            578999999998877666655  44 555 45666666665 4557766 44       334444432    27999999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      ++....+...+..++..  |.-+++..+.
T Consensus        69 ~tp~~~h~~~~~~~l~~--g~~v~~EKP~   95 (120)
T PF01408_consen   69 ATPPSSHAEIAKKALEA--GKHVLVEKPL   95 (120)
T ss_dssp             ESSGGGHHHHHHHHHHT--TSEEEEESSS
T ss_pred             ecCCcchHHHHHHHHHc--CCEEEEEcCC
Confidence            99888787788888877  5566776443

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.27  E-value=0.032  Score=45.67  Aligned_cols=80  Identities=14%  Similarity=0.224  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCC---hhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCceee--CCCCCCCccHHHHHHhhhCC
Q 024295           84 KGSSVAVLGLG---TVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTDFI--NPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        84 ~~~~vlI~G~g---~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v~--~~~~~~~~~~~~~i~~~~~~  154 (269)
                      +++++||+|++   ++|.+.++.+...|+ +|+.++++++..+.+    ++++....+  |-.+  .++..+.+.+....
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~   85 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVRE--PGQLEAVFARIAEE   85 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCC--HHHHHHHHHHHHHH
Confidence            47889999853   899999988888999 888888875432222    233322222  2222  22333333332211


Q ss_pred             -CCccEEEEccCC
Q 024295          155 -MGVDYCFECTGV  166 (269)
Q Consensus       155 -~~~d~v~d~~g~  166 (269)
                       ..+|++++++|.
T Consensus        86 ~g~ld~lv~nAg~   98 (258)
T PRK07533         86 WGRLDFLLHSIAF   98 (258)
T ss_pred             cCCCCEEEEcCcc
Confidence             279999998863

>PRK06849 hypothetical protein; Provisional

Probab=96.27  E-value=0.29  Score=42.72  Aligned_cols=95  Identities=14%  Similarity=0.021  Sum_probs=59.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      ...+|||+|+ .+.|+..+..++..|. +|++++.++.......+. .....+.....+++.+.+.+.++....++|+++
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~-~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~vI   81 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGH-TVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLLI   81 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence            3578999997 5689999999999999 999998776443322221 111223222212355778888877666899999


Q ss_pred             EccCChhHHHHHHHHccc
Q 024295          162 ECTGVPSLLSEALETTKV  179 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~  179 (269)
                      -+......+....+.+.+
T Consensus        82 P~~e~~~~~a~~~~~l~~   99 (389)
T PRK06849         82 PTCEEVFYLSHAKEELSA   99 (389)
T ss_pred             ECChHHHhHHhhhhhhcC
Confidence            776532222233344555

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.26  E-value=0.019  Score=42.05  Aligned_cols=34  Identities=26%  Similarity=0.430  Sum_probs=29.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      ..+|+|+|+|++|..++..+...|..+++.+|..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            5789999999999999888888899899999853

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK08267 short chain dehydrogenase; Provisional

Probab=96.26  E-value=0.029  Score=45.86  Aligned_cols=78  Identities=17%  Similarity=0.158  Sum_probs=51.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CC-C-ce--eeCCCCCCCccHHHHHHhhhC--CCCc
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FG-M-TD--FINPDDEPNKSISELVKGITH--GMGV  157 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g-~-~~--v~~~~~~~~~~~~~~i~~~~~--~~~~  157 (269)
                      +++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+.+ .+ . .+  ..|-.+  ..++.+.+.+...  ..++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~~~~i   78 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGAGNAWTGALDVTD--RAAWDAALADFAAATGGRL   78 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHcCCCC
Confidence            47999986 8999999998888899 99999998877666543 22 1 11  223332  1333333333211  2379


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |+++.++|.
T Consensus        79 d~vi~~ag~   87 (260)
T PRK08267         79 DVLFNNAGI   87 (260)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.25  E-value=0.031  Score=47.70  Aligned_cols=36  Identities=19%  Similarity=0.366  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      .+.+|+|+|+|++|..++..+...|..+++.+|.+.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            457899999999999999999999998999898753

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.25  E-value=0.038  Score=45.06  Aligned_cols=80  Identities=15%  Similarity=0.135  Sum_probs=50.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce-ee--CCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD-FI--NPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+    ++.+... .+  |..+  ...+.+.+.+... -
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   82 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTN--EDAVNAGIDKVAERF   82 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4688999986 9999999999999999 899999887655433    2334332 11  2222  1222222222211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|+++.+.|.
T Consensus        83 ~~~d~vi~~ag~   94 (262)
T PRK13394         83 GSVDILVSNAGI   94 (262)
T ss_pred             CCCCEEEECCcc
Confidence            268999998864

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=96.25  E-value=0.049  Score=44.96  Aligned_cols=130  Identities=21%  Similarity=0.275  Sum_probs=83.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCC--------CCccHHHHHHhhh-
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDE--------PNKSISELVKGIT-  152 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~--------~~~~~~~~i~~~~-  152 (269)
                      ..+..++|+.|.|..|++++..++..|+ .|...+..+.+.+..+.+|+...--.++.        -.++|...-.++. 
T Consensus       161 tv~pA~vlv~G~Gvagl~aiata~~lG~-iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a  239 (356)
T COG3288         161 TVSPAKVLVIGAGVAGLAAIATAVRLGA-IVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVA  239 (356)
T ss_pred             cccchhhhhhhHHHHHHHHHHHHhhcce-EEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHH
Confidence            3456788999999999999999999999 99998888888777777775432211110        0122322222221 


Q ss_pred             C-CCCccEEEEcc---CChh---HHHHHHHHcccCCcEEEEEccCCC--ccccchhHhhhhCCceEEeee
Q 024295          153 H-GMGVDYCFECT---GVPS---LLSEALETTKVGKGKVIVIGVGVD--AMVPLNVIALACGGRTLKGTT  213 (269)
Q Consensus       153 ~-~~~~d~v~d~~---g~~~---~~~~~~~~l~~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~  213 (269)
                      . -.++|+||-+.   |.+.   ...++...+++| ..+|.+....+  .....+-.-...++.+++|..
T Consensus       240 ~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpG-SViVDlAa~~GGNce~t~pg~~v~~~gV~iig~~  308 (356)
T COG3288         240 EQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPG-SVIVDLAAETGGNCELTEPGKVVTKNGVKIIGYT  308 (356)
T ss_pred             HHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCC-cEEEEehhhcCCCcccccCCeEEEeCCeEEEeec
Confidence            1 13899999876   3322   256888999997 99999875544  222222222334677887754

>PRK07478 short chain dehydrogenase; Provisional

Probab=96.24  E-value=0.03  Score=45.59  Aligned_cols=80  Identities=20%  Similarity=0.191  Sum_probs=51.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCce-ee--CCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTD-FI--NPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v~--~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+.    +.+... .+  |..+  ++...+.+.+... -
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   81 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRD--EAYAKALVALAVERF   81 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHhc
Confidence            4678999986 8999999988888999 8999999877665442    233221 22  3222  1222222332221 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      ..+|++++++|.
T Consensus        82 ~~id~li~~ag~   93 (254)
T PRK07478         82 GGLDIAFNNAGT   93 (254)
T ss_pred             CCCCEEEECCCC
Confidence            279999998873

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=96.24  E-value=0.04  Score=43.99  Aligned_cols=105  Identities=21%  Similarity=0.166  Sum_probs=62.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc-------------------chHHHHHh----CCCceeeCCCCCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP-------------------WKKEKGKA----FGMTDFINPDDEP  140 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~-------------------~~~~~~~~----~g~~~v~~~~~~~  140 (269)
                      +.++|+|+|.|++|..++..+...|..++..+|.+.                   .|.+.+++    ..+.--++..+  
T Consensus        29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~--  106 (263)
T COG1179          29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIN--  106 (263)
T ss_pred             hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehH--
Confidence            468899999999999999999999998888887432                   11111111    11111111111  


Q ss_pred             CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHH-HcccCCcEEEEEccCCC
Q 024295          141 NKSISELVKGITHGMGVDYCFECTGVPSLLSEALE-TTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       141 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~-~l~~~~G~~v~~g~~~~  192 (269)
                      +.-..+.+.++... ++|+|+||...-..--.++. +.+.+ =.++..+...+
T Consensus       107 ~f~t~en~~~~~~~-~~DyvIDaiD~v~~Kv~Li~~c~~~k-i~vIss~Gag~  157 (263)
T COG1179         107 DFITEENLEDLLSK-GFDYVIDAIDSVRAKVALIAYCRRNK-IPVISSMGAGG  157 (263)
T ss_pred             hhhCHhHHHHHhcC-CCCEEEEchhhhHHHHHHHHHHHHcC-CCEEeeccccC
Confidence            02223344455555 99999999976544334444 44453 56777765443

>PLN03139 formate dehydrogenase; Provisional

Probab=96.23  E-value=0.06  Score=46.75  Aligned_cols=90  Identities=16%  Similarity=0.170  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .|++|.|+|.|.+|...++.++..|. +|++.+++....+..++.|+...        .++.+.+.      ..|+|+-+
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g~~~~--------~~l~ell~------~sDvV~l~  262 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETGAKFE--------EDLDAMLP------KCDVVVIN  262 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcCceec--------CCHHHHHh------hCCEEEEe
Confidence            57899999999999999999999999 99999877544444444443211        12322221      45777665


Q ss_pred             cCChhH-----HHHHHHHcccCCcEEEEEcc
Q 024295          164 TGVPSL-----LSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       164 ~g~~~~-----~~~~~~~l~~~~G~~v~~g~  189 (269)
                      +.....     -...+..++++ ..+|.++.
T Consensus       263 lPlt~~T~~li~~~~l~~mk~g-a~lIN~aR  292 (386)
T PLN03139        263 TPLTEKTRGMFNKERIAKMKKG-VLIVNNAR  292 (386)
T ss_pred             CCCCHHHHHHhCHHHHhhCCCC-eEEEECCC
Confidence            543221     12445566664 66666653

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.22  E-value=0.03  Score=45.27  Aligned_cols=79  Identities=16%  Similarity=0.124  Sum_probs=50.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc-ee--eCCCCCCCccHHHH-HHhhhCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT-DF--INPDDEPNKSISEL-VKGITHG  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v--~~~~~~~~~~~~~~-i~~~~~~  154 (269)
                      +++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.    ..+.. .+  .|-.+   .+..+. +.+....
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~---~~~~~~~~~~~~~~   81 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLAD---PASVQRFFDAAAAA   81 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC---HHHHHHHHHHHHHH
Confidence            4688999986 9999999998888999 8999988877555432    22322 12  23322   222222 2222111


Q ss_pred             -CCccEEEEccCC
Q 024295          155 -MGVDYCFECTGV  166 (269)
Q Consensus       155 -~~~d~v~d~~g~  166 (269)
                       .++|+++.++|.
T Consensus        82 ~~~id~vi~~ag~   94 (250)
T PRK12939         82 LGGLDGLVNNAGI   94 (250)
T ss_pred             cCCCCEEEECCCC
Confidence             279999999874

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.21  E-value=0.052  Score=40.14  Aligned_cols=32  Identities=31%  Similarity=0.378  Sum_probs=28.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      +|+|+|+|++|...++.+...|.++++.+|.+
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            48999999999999999999999889999754

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.21  E-value=0.041  Score=43.99  Aligned_cols=74  Identities=19%  Similarity=0.175  Sum_probs=48.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCcee-eCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      +++|+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+ ++++...+ .|-.+  +.++.+.+.+. .+ .+|+++++
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~-~~-~id~lv~~   76 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKELDVDAIVCDNTD--PASLEEARGLF-PH-HLDTIVNV   76 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCcEEecCCCC--HHHHHHHHHHH-hh-cCcEEEEC
Confidence            4899986 8999999998888899 999999888776654 33444322 23332  12233333332 22 68999987


Q ss_pred             cC
Q 024295          164 TG  165 (269)
Q Consensus       164 ~g  165 (269)
                      .|
T Consensus        77 ag   78 (223)
T PRK05884         77 PA   78 (223)
T ss_pred             CC
Confidence            64

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.21  E-value=0.053  Score=47.11  Aligned_cols=35  Identities=20%  Similarity=0.224  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      .+.+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            56789999999999999999999999899999876

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.21  E-value=0.036  Score=44.94  Aligned_cols=35  Identities=29%  Similarity=0.415  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      ++.+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus        23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            35789999999999999999999999899888754

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK07024 short chain dehydrogenase; Provisional

Probab=96.20  E-value=0.03  Score=45.68  Aligned_cols=79  Identities=11%  Similarity=0.066  Sum_probs=49.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCC--c-ee--eCCCCCCCccHHHHHHhhhC-CCC
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGM--T-DF--INPDDEPNKSISELVKGITH-GMG  156 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~--~-~v--~~~~~~~~~~~~~~i~~~~~-~~~  156 (269)
                      ..++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+.+ +..  . ..  .|-.+  .+.+.+.+.+... ...
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~i~~~~~~~~~~~g~   78 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRD--ADALAAAAADFIAAHGL   78 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCC--HHHHHHHHHHHHHhCCC
Confidence            368999986 8999999888888899 99999998877655433 221  1 11  22222  1233333333221 125


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|++++++|.
T Consensus        79 id~lv~~ag~   88 (257)
T PRK07024         79 PDVVIANAGI   88 (257)
T ss_pred             CCEEEECCCc
Confidence            8999998863

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.20  E-value=0.038  Score=43.89  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      +..+|+|+|+|++|...++.+...|..+++.+|.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45789999999999999999999999889999866

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=96.18  E-value=0.11  Score=41.08  Aligned_cols=98  Identities=19%  Similarity=0.224  Sum_probs=59.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      ++++.+||-+|+|+ |..+..+++..+. .+|+++|.++.     .......++..+- ......+++.+..+...+|+|
T Consensus        49 ~~~~~~VLDlG~Gt-G~~t~~l~~~~~~~~~V~aVDi~~~-----~~~~~v~~i~~D~-~~~~~~~~i~~~~~~~~~D~V  121 (209)
T PRK11188         49 FKPGMTVVDLGAAP-GGWSQYAVTQIGDKGRVIACDILPM-----DPIVGVDFLQGDF-RDELVLKALLERVGDSKVQVV  121 (209)
T ss_pred             CCCCCEEEEEcccC-CHHHHHHHHHcCCCceEEEEecccc-----cCCCCcEEEecCC-CChHHHHHHHHHhCCCCCCEE
Confidence            57889999999877 7777777777653 38999998761     1111122332221 112223444443334489999


Q ss_pred             EEcc-----CCh------------hHHHHHHHHcccCCcEEEEE
Q 024295          161 FECT-----GVP------------SLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       161 ~d~~-----g~~------------~~~~~~~~~l~~~~G~~v~~  187 (269)
                      +-..     |.+            ..++.+.+.|++| |+++..
T Consensus       122 ~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG-G~~vi~  164 (209)
T PRK11188        122 MSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG-GSFVVK  164 (209)
T ss_pred             ecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEE
Confidence            8532     221            2467888899997 998774

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.18  E-value=0.083  Score=45.10  Aligned_cols=88  Identities=17%  Similarity=0.293  Sum_probs=54.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .|++|.|+|.|.+|...++.++..|. +|++.+++.+.. ...+.+...         .++.+.+.      ..|+|+-+
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~-~~~~~~~~~---------~~l~ell~------~aDiV~l~  211 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKPE-AEKELGAEY---------RPLEELLR------ESDFVSLH  211 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCChh-hHHHcCCEe---------cCHHHHHh------hCCEEEEe
Confidence            57899999999999999999999999 999999875432 223333211         11222221      45677666


Q ss_pred             cCChhH-----HHHHHHHcccCCcEEEEEcc
Q 024295          164 TGVPSL-----LSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       164 ~g~~~~-----~~~~~~~l~~~~G~~v~~g~  189 (269)
                      +...+.     -...+..++++ ..++.++.
T Consensus       212 lP~t~~T~~~i~~~~~~~mk~g-a~lIN~aR  241 (333)
T PRK13243        212 VPLTKETYHMINEERLKLMKPT-AILVNTAR  241 (333)
T ss_pred             CCCChHHhhccCHHHHhcCCCC-eEEEECcC
Confidence            643221     12445566664 66666553

>PRK06128 oxidoreductase; Provisional

Probab=96.18  E-value=0.071  Score=44.69  Aligned_cols=80  Identities=18%  Similarity=0.126  Sum_probs=47.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcch--H----HHHHhCCCce-ee--CCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWK--K----EKGKAFGMTD-FI--NPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~--~----~~~~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~  153 (269)
                      .++++||+|+ |.+|.+.+..+...|+ +|+.+.++.+.  .    +.++..+... .+  |-.+  .....+.+.+...
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~  130 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKD--EAFCRQLVERAVK  130 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHHHHH
Confidence            4689999986 8999999988888899 88777654321  1    1223344322 22  2222  1222222322211


Q ss_pred             -CCCccEEEEccCC
Q 024295          154 -GMGVDYCFECTGV  166 (269)
Q Consensus       154 -~~~~d~v~d~~g~  166 (269)
                       -.++|++++++|.
T Consensus       131 ~~g~iD~lV~nAg~  144 (300)
T PRK06128        131 ELGGLDILVNIAGK  144 (300)
T ss_pred             HhCCCCEEEECCcc
Confidence             1279999998873

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.18  E-value=0.05  Score=44.97  Aligned_cols=70  Identities=17%  Similarity=0.158  Sum_probs=48.0

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCC---CceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFG---MTDFINPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g---~~~v~~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      .++++++|+|+|++|.+++..+...|. +|+++++++++.+.+ +++.   ........        +    .. ...+|
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~--------~----~~-~~~~D  180 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEELAERFQRYGEIQAFSMD--------E----LP-LHRVD  180 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhcCceEEechh--------h----hc-ccCcc
Confidence            457899999999999999888888898 999999987766544 3332   11121111        1    11 12689


Q ss_pred             EEEEccCC
Q 024295          159 YCFECTGV  166 (269)
Q Consensus       159 ~v~d~~g~  166 (269)
                      ++++|++.
T Consensus       181 ivInatp~  188 (270)
T TIGR00507       181 LIINATSA  188 (270)
T ss_pred             EEEECCCC
Confidence            99999965

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK08328 hypothetical protein; Provisional

Probab=96.17  E-value=0.026  Score=45.47  Aligned_cols=35  Identities=31%  Similarity=0.438  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      .+.+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            45789999999999999999999999899998754

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.16  E-value=0.038  Score=44.40  Aligned_cols=79  Identities=16%  Similarity=0.085  Sum_probs=50.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce-e--eCCCCCCCccHHHHHHhhhC--
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD-F--INPDDEPNKSISELVKGITH--  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~--  153 (269)
                      ++++++|+|+ +++|.+.+.-+...|+ +|+.+++++++.+.+    ++.+.+. .  .|..+  +++..+.+.+...  
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFS--QESIRHLFDAIEQQF   80 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            4688999986 7899998888888899 899999888766543    2334321 2  23222  2333333333222  


Q ss_pred             CCCccEEEEccC
Q 024295          154 GMGVDYCFECTG  165 (269)
Q Consensus       154 ~~~~d~v~d~~g  165 (269)
                      +..+|+++++.|
T Consensus        81 g~~iD~li~nag   92 (227)
T PRK08862         81 NRAPDVLVNNWT   92 (227)
T ss_pred             CCCCCEEEECCc
Confidence            126999999986

>PRK06198 short chain dehydrogenase; Provisional

Probab=96.16  E-value=0.039  Score=45.04  Aligned_cols=81  Identities=20%  Similarity=0.185  Sum_probs=50.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHH----HHhCCCce---eeCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEK----GKAFGMTD---FINPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~----~~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      ++++++|+|+ |.+|...++.+...|++.|+.+++++++...    ++..+...   ..|..+  ++.+.+.+..... -
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   82 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSD--VEDCRRVVAAADEAF   82 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            5688999986 8999999999988999449999987655442    23334321   223332  1222222222211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|+++++.|.
T Consensus        83 g~id~li~~ag~   94 (260)
T PRK06198         83 GRLDALVNAAGL   94 (260)
T ss_pred             CCCCEEEECCCc
Confidence            269999999874

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.031  Score=45.79  Aligned_cols=80  Identities=19%  Similarity=0.204  Sum_probs=50.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----CCC-c---eeeCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-----FGM-T---DFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-----~g~-~---~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      +++++||+|+ +.+|.+.++.+...|+ +|+.+++++++.+.+.+     .+. .   ...|-.+  .+...+.+.+...
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   83 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLD--EADVAAFAAAVEA   83 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC--HHHHHHHHHHHHH
Confidence            4788999986 8999999999988999 89999998876654322     111 1   1123332  1223222322221


Q ss_pred             -CCCccEEEEccCC
Q 024295          154 -GMGVDYCFECTGV  166 (269)
Q Consensus       154 -~~~~d~v~d~~g~  166 (269)
                       -..+|++++++|.
T Consensus        84 ~~g~id~li~~Ag~   97 (265)
T PRK07062         84 RFGGVDMLVNNAGQ   97 (265)
T ss_pred             hcCCCCEEEECCCC
Confidence             1269999999874

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.15  E-value=0.045  Score=44.02  Aligned_cols=80  Identities=20%  Similarity=0.251  Sum_probs=50.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce-e--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD-F--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      ++.++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+    +..+... +  .|..+  +..+.+.+.+... -
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSD--EAAVRALIEAAVEAF   80 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            3578999986 9999999988888899 799999987765443    2334322 2  23322  2223333333211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|.++.++|.
T Consensus        81 ~~id~vi~~ag~   92 (246)
T PRK05653         81 GALDILVNNAGI   92 (246)
T ss_pred             CCCCEEEECCCc
Confidence            268999998854

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=96.14  E-value=0.3  Score=39.81  Aligned_cols=99  Identities=15%  Similarity=0.199  Sum_probs=63.4

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC-ceeeCCCCCCCccHHHHHHhhhCCCC
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM-TDFINPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      ......+..+||-+|+|+ |..+..+++ .|. +++++|.+++..+.+++... ..++..      +..+ + .. .+..
T Consensus        36 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~~D~s~~~l~~a~~~~~~~~~~~~------d~~~-~-~~-~~~~  103 (251)
T PRK10258         36 AMLPQRKFTHVLDAGCGP-GWMSRYWRE-RGS-QVTALDLSPPMLAQARQKDAADHYLAG------DIES-L-PL-ATAT  103 (251)
T ss_pred             HhcCccCCCeEEEeeCCC-CHHHHHHHH-cCC-eEEEEECCHHHHHHHHhhCCCCCEEEc------Cccc-C-cC-CCCc
Confidence            333444678899999886 766666655 466 99999999998888877532 222211      1110 0 11 2237


Q ss_pred             ccEEEEccC------ChhHHHHHHHHcccCCcEEEEEcc
Q 024295          157 VDYCFECTG------VPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       157 ~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      ||+|+....      ....+.++.+.+++| |.++....
T Consensus       104 fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~g-G~l~~~~~  141 (251)
T PRK10258        104 FDLAWSNLAVQWCGNLSTALRELYRVVRPG-GVVAFTTL  141 (251)
T ss_pred             EEEEEECchhhhcCCHHHHHHHHHHHcCCC-eEEEEEeC
Confidence            999986432      123578889999996 99887643

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=96.14  E-value=0.0033  Score=50.71  Aligned_cols=102  Identities=22%  Similarity=0.281  Sum_probs=62.5

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCC---ceeeCCCCCCCccHHHHHH
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGM---TDFINPDDEPNKSISELVK  149 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~---~~v~~~~~~~~~~~~~~i~  149 (269)
                      +....+++.+||-+|+|+ |..+..+++..+. .+|+++|-+++-++.+++    .+.   +.+....    .++.    
T Consensus        41 ~~~~~~~g~~vLDv~~Gt-G~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da----~~lp----  111 (233)
T PF01209_consen   41 KLLGLRPGDRVLDVACGT-GDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA----EDLP----  111 (233)
T ss_dssp             HHHT--S--EEEEET-TT-SHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT----TB------
T ss_pred             hccCCCCCCEEEEeCCCh-HHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH----HHhc----
Confidence            345678899999999886 8888889988764 389999999988888765    222   2222111    1111    


Q ss_pred             hhhCCCCccEEEEccCC------hhHHHHHHHHcccCCcEEEEEccCC
Q 024295          150 GITHGMGVDYCFECTGV------PSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       150 ~~~~~~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                       . ++..||+|.-+.|-      ...+.++.+.|+|| |+++.+....
T Consensus       112 -~-~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPG-G~l~ile~~~  156 (233)
T PF01209_consen  112 -F-PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPG-GRLVILEFSK  156 (233)
T ss_dssp             -S--TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEE-EEEEEEEEEB
T ss_pred             -C-CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCC-eEEEEeeccC
Confidence             1 22379999865543      33688999999997 9988776544

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK08264 short chain dehydrogenase; Validated

Probab=96.12  E-value=0.043  Score=44.11  Aligned_cols=75  Identities=21%  Similarity=0.264  Sum_probs=48.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc-ee--eCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT-DF--INPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      .++++||+|+ |.+|...++.+...|+++|+.+++++++.+.   .+.. .+  .|..+   .+-.+.+.+..  ..+|+
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~---~~~~~~~~~~~--~~id~   76 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQLDVTD---PASVAAAAEAA--SDVTI   76 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEEecCCC---HHHHHHHHHhc--CCCCE
Confidence            4678999985 9999999998888898789999988765543   2221 12  22222   22222222222  26899


Q ss_pred             EEEccCC
Q 024295          160 CFECTGV  166 (269)
Q Consensus       160 v~d~~g~  166 (269)
                      ++.+.|.
T Consensus        77 vi~~ag~   83 (238)
T PRK08264         77 LVNNAGI   83 (238)
T ss_pred             EEECCCc
Confidence            9998876

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.11  E-value=0.091  Score=35.74  Aligned_cols=76  Identities=18%  Similarity=0.308  Sum_probs=50.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC---CCeEEEE-cCCcchHHHHH-hCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           87 SVAVLGLGTVGLGAVDGARMHG---AAKIIGI-DKNPWKKEKGK-AFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g---~~~v~~~-~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      +|.|+|+|.+|.+.+.-+...|   . +|+.+ ++++++.+.+. +++.....       .+..+.+.      ..|+||
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~~~~~-------~~~~~~~~------~advvi   66 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGVQATA-------DDNEEAAQ------EADVVI   66 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTTEEES-------EEHHHHHH------HTSEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhcccccc-------CChHHhhc------cCCEEE
Confidence            5778899999999998888888   5 78844 89998888774 46644322       23333443      569999


Q ss_pred             EccCChhHHHHHHHHc
Q 024295          162 ECTGVPSLLSEALETT  177 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l  177 (269)
                      -|+... .+.+.++.+
T Consensus        67 lav~p~-~~~~v~~~i   81 (96)
T PF03807_consen   67 LAVKPQ-QLPEVLSEI   81 (96)
T ss_dssp             E-S-GG-GHHHHHHHH
T ss_pred             EEECHH-HHHHHHHHH
Confidence            999654 445555544

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK08703 short chain dehydrogenase; Provisional

Probab=96.10  E-value=0.044  Score=44.11  Aligned_cols=41  Identities=22%  Similarity=0.246  Sum_probs=34.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG  125 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~  125 (269)
                      ++++++|+|+ |.+|...++.+...|+ +|+++++++++.+.+
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~   46 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKV   46 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHH
Confidence            4678999986 8999999988888899 899999988766544

>PTZ00146 fibrillarin; Provisional

Probab=96.10  E-value=0.1  Score=43.38  Aligned_cols=101  Identities=18%  Similarity=0.228  Sum_probs=61.8

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHH----HHhC-CCceeeCCCCCCCccHHHHHHhh
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEK----GKAF-GMTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~----~~~~-g~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      ....++++++||-+|+|+ |..+..++...+. ..|++++.+++..+.    +++. +...++....     ........
T Consensus       126 ~~l~IkpG~~VLDLGaG~-G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~-----~p~~y~~~  199 (293)
T PTZ00146        126 ANIPIKPGSKVLYLGAAS-GTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDAR-----YPQKYRML  199 (293)
T ss_pred             ceeccCCCCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCcc-----Chhhhhcc
Confidence            445789999999999876 8888888888864 389999987543322    2222 2233322111     11112211


Q ss_pred             hCCCCccEEEEccCChh----HHHHHHHHcccCCcEEEEE
Q 024295          152 THGMGVDYCFECTGVPS----LLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~~~----~~~~~~~~l~~~~G~~v~~  187 (269)
                      . + .+|+||-.+..+.    ....+.+.|+++ |+++..
T Consensus       200 ~-~-~vDvV~~Dva~pdq~~il~~na~r~LKpG-G~~vI~  236 (293)
T PTZ00146        200 V-P-MVDVIFADVAQPDQARIVALNAQYFLKNG-GHFIIS  236 (293)
T ss_pred             c-C-CCCEEEEeCCCcchHHHHHHHHHHhccCC-CEEEEE
Confidence            1 2 6999986554432    234567799996 998873

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.09  E-value=0.049  Score=45.98  Aligned_cols=89  Identities=13%  Similarity=0.204  Sum_probs=56.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+++|.|+|.|.+|...++.++..|. +|++.+++.++..     +.......     .++.+.+.      ..|+|+.+
T Consensus       135 ~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~~~-----~~~~~~~~-----~~l~e~l~------~aDvvv~~  197 (312)
T PRK15469        135 EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKSWP-----GVQSFAGR-----EELSAFLS------QTRVLINL  197 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCCCC-----Cceeeccc-----ccHHHHHh------cCCEEEEC
Confidence            57899999999999999999999999 9999987543321     11111111     22332222      56777777


Q ss_pred             cCChhH-----HHHHHHHcccCCcEEEEEccC
Q 024295          164 TGVPSL-----LSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       164 ~g~~~~-----~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      ....+.     -...+..++++ ..+|.+|..
T Consensus       198 lPlt~~T~~li~~~~l~~mk~g-a~lIN~aRG  228 (312)
T PRK15469        198 LPNTPETVGIINQQLLEQLPDG-AYLLNLARG  228 (312)
T ss_pred             CCCCHHHHHHhHHHHHhcCCCC-cEEEECCCc
Confidence            753222     12456677775 777777643

>PRK07576 short chain dehydrogenase; Provisional

Probab=96.09  E-value=0.041  Score=45.20  Aligned_cols=79  Identities=16%  Similarity=0.164  Sum_probs=50.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-e--eeCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-D--FINPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~--v~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |.+|...++.+...|+ +|+.+++++++.+..    .+.+.. .  .+|..+  +.+....+.+... .
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~i~~~~~~~~~~~   84 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRD--YAAVEAAFAQIADEF   84 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            5789999986 8999999998888999 899999887655433    222322 1  123322  1223333333321 1


Q ss_pred             CCccEEEEccC
Q 024295          155 MGVDYCFECTG  165 (269)
Q Consensus       155 ~~~d~v~d~~g  165 (269)
                      .++|+++.+.|
T Consensus        85 ~~iD~vi~~ag   95 (264)
T PRK07576         85 GPIDVLVSGAA   95 (264)
T ss_pred             CCCCEEEECCC
Confidence            27899998775

>PLN02823 spermine synthase

Probab=96.09  E-value=0.061  Score=45.83  Aligned_cols=100  Identities=13%  Similarity=0.089  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CCc-eeeC-CCC-CCCccHHHHHHhhhCCCCccE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GMT-DFIN-PDD-EPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~~-~v~~-~~~-~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      ..++|||+|+|. |.++..+++..+.++|++++.+++-.+.++++ +.. ..++ .+- --..|..+.+++ .+ ..+|+
T Consensus       103 ~pk~VLiiGgG~-G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~-~~-~~yDv  179 (336)
T PLN02823        103 NPKTVFIMGGGE-GSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK-RD-EKFDV  179 (336)
T ss_pred             CCCEEEEECCCc-hHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-CC-CCccE
Confidence            457899999875 66777888877777999999999999988873 211 1111 110 001333334433 23 38998


Q ss_pred             EE-EccC----Ch-------hHHH-HHHHHcccCCcEEEEE
Q 024295          160 CF-ECTG----VP-------SLLS-EALETTKVGKGKVIVI  187 (269)
Q Consensus       160 v~-d~~g----~~-------~~~~-~~~~~l~~~~G~~v~~  187 (269)
                      || |...    ++       ..++ .+.+.|+++ |.++.-
T Consensus       180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~-Gvlv~q  219 (336)
T PLN02823        180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPG-GIFVTQ  219 (336)
T ss_pred             EEecCCCccccCcchhhccHHHHHHHHHHhcCCC-cEEEEe
Confidence            86 5332    11       1344 678899996 988764

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=96.08  E-value=0.043  Score=44.85  Aligned_cols=77  Identities=21%  Similarity=0.228  Sum_probs=48.7

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCceee--CCCCCCCccHHHHHHhhhC-CCCcc
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTDFI--NPDDEPNKSISELVKGITH-GMGVD  158 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v~--~~~~~~~~~~~~~i~~~~~-~~~~d  158 (269)
                      ++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.    +.+..+.+  |-.+  .++..+.+.+... -.++|
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d--~~~~~~~~~~~~~~~g~id   78 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYGEVYAVKADLSD--KDDLKNLVKEAWELLGGID   78 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCC--HHHHHHHHHHHHHhcCCCC
Confidence            5899986 8999999888888899 8999998876654432    22322222  2222  2233333333221 12799


Q ss_pred             EEEEccCC
Q 024295          159 YCFECTGV  166 (269)
Q Consensus       159 ~v~d~~g~  166 (269)
                      +++++.|.
T Consensus        79 ~li~naG~   86 (259)
T PRK08340         79 ALVWNAGN   86 (259)
T ss_pred             EEEECCCC
Confidence            99998874

>TIGR00452 methyltransferase, putative

Probab=96.07  E-value=0.037  Score=46.67  Aligned_cols=99  Identities=15%  Similarity=0.146  Sum_probs=60.8

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHH---HHHhC-CC---ceeeCCCCCCCccHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKE---KGKAF-GM---TDFINPDDEPNKSISELV  148 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~---~~~~~-g~---~~v~~~~~~~~~~~~~~i  148 (269)
                      +.......++++||-+|+|. |..+..+++. |+..|++++.++....   .++.+ +.   .++..      .++    
T Consensus       113 ~l~~l~~~~g~~VLDvGCG~-G~~~~~~~~~-g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~------~~i----  180 (314)
T TIGR00452       113 VLPHLSPLKGRTILDVGCGS-GYHMWRMLGH-GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEP------LGI----  180 (314)
T ss_pred             HHHhcCCCCCCEEEEeccCC-cHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEE------CCH----
Confidence            33444566789999999987 7777666654 6658999998875433   23332 21   12221      111    


Q ss_pred             HhhhCCCCccEEEEcc-----CC-hhHHHHHHHHcccCCcEEEEE
Q 024295          149 KGITHGMGVDYCFECT-----GV-PSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~-----g~-~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      .++.....||+|+-.-     .. ...+.++.+.|++| |++++-
T Consensus       181 e~lp~~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpG-G~Lvle  224 (314)
T TIGR00452       181 EQLHELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIK-GELVLE  224 (314)
T ss_pred             HHCCCCCCcCEEEEcchhhccCCHHHHHHHHHHhcCCC-CEEEEE
Confidence            1222223799997431     12 24688899999997 999864

Known examples to date are restricted to the proteobacteria.

>PRK06125 short chain dehydrogenase; Provisional

Probab=96.07  E-value=0.054  Score=44.24  Aligned_cols=77  Identities=17%  Similarity=0.260  Sum_probs=50.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----CCCc-eee--CCCCCCCccHHHHHHhhhCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-----FGMT-DFI--NPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-----~g~~-~v~--~~~~~~~~~~~~~i~~~~~~  154 (269)
                      +++++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+     .+.. ..+  |-.+  ..+..+.+.. . +
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~-~-g   80 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSS--PEAREQLAAE-A-G   80 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC--HHHHHHHHHH-h-C
Confidence            4689999986 8999999988888899 99999988776655322     1221 222  2222  1222222222 2 2


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                       .+|+++++.|.
T Consensus        81 -~id~lv~~ag~   91 (259)
T PRK06125         81 -DIDILVNNAGA   91 (259)
T ss_pred             -CCCEEEECCCC
Confidence             79999998864

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=96.06  E-value=0.049  Score=46.43  Aligned_cols=99  Identities=19%  Similarity=0.200  Sum_probs=63.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      .++.+||-+|+|. |..+..+++..+..+++++|.+++..+.+++.....-+....   .+..+ + .. ....||+|+-
T Consensus       112 ~~~~~VLDLGcGt-G~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~---gD~e~-l-p~-~~~sFDvVIs  184 (340)
T PLN02490        112 DRNLKVVDVGGGT-GFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIE---GDAED-L-PF-PTDYADRYVS  184 (340)
T ss_pred             CCCCEEEEEecCC-cHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEe---ccHHh-C-CC-CCCceeEEEE
Confidence            4678999999876 777778888765459999999988777776642111011111   22211 1 11 2236998875


Q ss_pred             cc-----C-ChhHHHHHHHHcccCCcEEEEEcc
Q 024295          163 CT-----G-VPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       163 ~~-----g-~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      +-     . ....++++.+.|++| |+++..+.
T Consensus       185 ~~~L~~~~d~~~~L~e~~rvLkPG-G~LvIi~~  216 (340)
T PLN02490        185 AGSIEYWPDPQRGIKEAYRVLKIG-GKACLIGP  216 (340)
T ss_pred             cChhhhCCCHHHHHHHHHHhcCCC-cEEEEEEe
Confidence            32     1 123578899999997 99987753

>PRK07454 short chain dehydrogenase; Provisional

Probab=96.06  E-value=0.047  Score=44.00  Aligned_cols=80  Identities=13%  Similarity=0.072  Sum_probs=50.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DF--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +.+++||+|+ |.+|..++..+...|. +|+++++++++.+.+.+    .+.. ..  .|-.+  .+.+...+.+... -
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   81 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSN--PEAIAPGIAELLEQF   81 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4578999986 9999999999988999 99999998766554422    2221 12  22222  2333333333221 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|+++.++|.
T Consensus        82 ~~id~lv~~ag~   93 (241)
T PRK07454         82 GCPDVLINNAGM   93 (241)
T ss_pred             CCCCEEEECCCc
Confidence            269999998874

>PRK06483 dihydromonapterin reductase; Provisional

Probab=96.06  E-value=0.058  Score=43.35  Aligned_cols=79  Identities=11%  Similarity=0.124  Sum_probs=49.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcch-HHHHHhCCCce-eeCCCCCCCccHHHHHHhhhCC-CCccEE
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWK-KEKGKAFGMTD-FINPDDEPNKSISELVKGITHG-MGVDYC  160 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~-~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~~-~~~d~v  160 (269)
                      ++++||+|+ |.+|.+.++.+...|+ +|+.+++++++ .+.++..+... ..|..+  .+...+.+.+.... .++|++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~l   78 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDGLRQAGAQCIQADFST--NAGIMAFIDELKQHTDGLRAI   78 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHHHHHcCCEEEEcCCCC--HHHHHHHHHHHHhhCCCccEE
Confidence            467999986 8999999998888899 99999887643 23344455322 123222  23333333333221 269999


Q ss_pred             EEccCC
Q 024295          161 FECTGV  166 (269)
Q Consensus       161 ~d~~g~  166 (269)
                      +++.|.
T Consensus        79 v~~ag~   84 (236)
T PRK06483         79 IHNASD   84 (236)
T ss_pred             EECCcc
Confidence            998864

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.06  E-value=0.048  Score=44.39  Aligned_cols=80  Identities=19%  Similarity=0.321  Sum_probs=50.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-eee--CCCCCCCccHHHHHHhhh-CC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-DFI--NPDDEPNKSISELVKGIT-HG  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v~--~~~~~~~~~~~~~i~~~~-~~  154 (269)
                      +++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+    ++.|.. ..+  |..+  .....+.+.+.. .-
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   85 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTD--HDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCC--HHHHHHHHHHHHHhc
Confidence            5789999986 9999999998888899 899999887655433    223321 112  3322  122333333221 11


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|+++.+.|.
T Consensus        86 ~~~d~li~~ag~   97 (255)
T PRK07523         86 GPIDILVNNAGM   97 (255)
T ss_pred             CCCCEEEECCCC
Confidence            379999998874

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.05  E-value=0.07  Score=41.69  Aligned_cols=75  Identities=23%  Similarity=0.343  Sum_probs=49.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C----CCce-eeCCCCCCCccHHHHHHhhhCCCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F----GMTD-FINPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~----g~~~-v~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      ++.+++|+|+ |.+|..++..+...|. +|+.+.|+.++.+.+.+ +    +... ..+..+  .++..+.+      .+
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~------~~   97 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSLRARFGEGVGAVETSD--DAARAAAI------KG   97 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCC--HHHHHHHH------hc
Confidence            5789999986 9999988888888887 99999998877665433 2    2221 111111  12222222      16


Q ss_pred             ccEEEEccCCh
Q 024295          157 VDYCFECTGVP  167 (269)
Q Consensus       157 ~d~v~d~~g~~  167 (269)
                      .|+||.++..+
T Consensus        98 ~diVi~at~~g  108 (194)
T cd01078          98 ADVVFAAGAAG  108 (194)
T ss_pred             CCEEEECCCCC
Confidence            89999988654

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=96.04  E-value=0.033  Score=42.03  Aligned_cols=81  Identities=21%  Similarity=0.243  Sum_probs=48.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC--cchHHHH----HhCCCc-eeeCCCCCCCccHHHHHHhhh-CCCC
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN--PWKKEKG----KAFGMT-DFINPDDEPNKSISELVKGIT-HGMG  156 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~--~~~~~~~----~~~g~~-~v~~~~~~~~~~~~~~i~~~~-~~~~  156 (269)
                      +++||+|+ +++|...++.+...|..+|+.+.++  .++.+.+    +..+.. .++..+-.+.++....+.+.. ....
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            47899986 8999998888777777688888888  3433333    334432 222211101233333333332 1238


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|++|.+.|.
T Consensus        81 ld~li~~ag~   90 (167)
T PF00106_consen   81 LDILINNAGI   90 (167)
T ss_dssp             ESEEEEECSC
T ss_pred             cccccccccc
Confidence            9999999875

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.03  E-value=0.047  Score=44.21  Aligned_cols=80  Identities=21%  Similarity=0.246  Sum_probs=49.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc-e--eeCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT-D--FINPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~--v~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+.    +.+.. +  ..|..+  .....+.+.+... .
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   81 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSD--PDSAKAMADATVSAF   81 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHh
Confidence            4678999986 9999999988888899 9999998876544332    22211 1  223222  1222222222211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++|.++|.
T Consensus        82 ~~id~vi~~ag~   93 (250)
T PRK07774         82 GGIDYLVNNAAI   93 (250)
T ss_pred             CCCCEEEECCCC
Confidence            269999998873

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=96.02  E-value=0.045  Score=44.65  Aligned_cols=80  Identities=21%  Similarity=0.277  Sum_probs=51.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc-eee--CCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT-DFI--NPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v~--~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |.+|...++.+...|+ +|+.++++.++.+.+.    ..+.. ..+  |..+  ...+.+.+.++.. .
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d--~~~i~~~~~~~~~~~   87 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVAD--EADIERLAEETLERF   87 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            5789999986 9999999988888999 9999999877655443    22321 122  3222  2223222222211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|.++.++|.
T Consensus        88 ~~id~vi~~ag~   99 (259)
T PRK08213         88 GHVDILVNNAGA   99 (259)
T ss_pred             CCCCEEEECCCC
Confidence            278999998864

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.02  E-value=0.044  Score=46.81  Aligned_cols=35  Identities=20%  Similarity=0.425  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      ...+|+|+|+|++|..+++.+...|..++..+|.+
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45789999999999999999999999899999875

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.00  E-value=0.044  Score=44.77  Aligned_cols=80  Identities=19%  Similarity=0.180  Sum_probs=50.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C-----CCc-ee--eCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F-----GMT-DF--INPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~-----g~~-~v--~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+.+ +     +.. ..  .|..+  +.+..+.+.+...
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   82 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTD--AASVAAAVAAAEE   82 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC--HHHHHHHHHHHHH
Confidence            4688999986 8999999998888999 89999988766554322 1     211 12  23222  1223333333211


Q ss_pred             -CCCccEEEEccCC
Q 024295          154 -GMGVDYCFECTGV  166 (269)
Q Consensus       154 -~~~~d~v~d~~g~  166 (269)
                       -..+|++++++|.
T Consensus        83 ~~g~id~li~~ag~   96 (260)
T PRK07063         83 AFGPLDVLVNNAGI   96 (260)
T ss_pred             HhCCCcEEEECCCc
Confidence             1279999998873

>PRK05717 oxidoreductase; Validated

Probab=95.99  E-value=0.046  Score=44.53  Aligned_cols=80  Identities=19%  Similarity=0.173  Sum_probs=50.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCc-e--eeCCCCCCCccHHHHHHhhhCC-CCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMT-D--FINPDDEPNKSISELVKGITHG-MGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~-~--v~~~~~~~~~~~~~~i~~~~~~-~~~  157 (269)
                      +++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+ ++++.. .  ..|-.+  .....+.+.+.... ..+
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~i   85 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKALGENAWFIAMDVAD--EAQVAAGVAEVLGQFGRL   85 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHcCCceEEEEccCCC--HHHHHHHHHHHHHHhCCC
Confidence            4788999986 9999999888888899 899998876654443 334422 1  222222  12222223332211 268


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |+++.+.|.
T Consensus        86 d~li~~ag~   94 (255)
T PRK05717         86 DALVCNAAI   94 (255)
T ss_pred             CEEEECCCc
Confidence            999998864

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.98  E-value=0.0082  Score=40.49  Aligned_cols=86  Identities=24%  Similarity=0.305  Sum_probs=53.5

Q ss_pred             EEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce---eeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           89 AVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD---FINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        89 lI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      |-+|+|. |..+..+++. +..++++++.+++..+.+++.....   +...+.   .++     .. ++..||+|+-...
T Consensus         1 LdiG~G~-G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~---~~l-----~~-~~~sfD~v~~~~~   69 (95)
T PF08241_consen    1 LDIGCGT-GRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDA---EDL-----PF-PDNSFDVVFSNSV   69 (95)
T ss_dssp             EEET-TT-SHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBT---TSS-----SS--TT-EEEEEEESH
T ss_pred             CEecCcC-CHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehH---HhC-----cc-ccccccccccccc
Confidence            4567774 8888899888 4449999999999888887743211   222111   111     11 2338999875331


Q ss_pred             ------ChhHHHHHHHHcccCCcEEEE
Q 024295          166 ------VPSLLSEALETTKVGKGKVIV  186 (269)
Q Consensus       166 ------~~~~~~~~~~~l~~~~G~~v~  186 (269)
                            ....+.++.+.++++ |+++.
T Consensus        70 ~~~~~~~~~~l~e~~rvLk~g-G~l~~   95 (95)
T PF08241_consen   70 LHHLEDPEAALREIYRVLKPG-GRLVI   95 (95)
T ss_dssp             GGGSSHHHHHHHHHHHHEEEE-EEEEE
T ss_pred             eeeccCHHHHHHHHHHHcCcC-eEEeC
Confidence                  123578999999996 98863

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=95.98  E-value=0.047  Score=44.19  Aligned_cols=79  Identities=25%  Similarity=0.207  Sum_probs=50.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCC-ceee--CCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGM-TDFI--NPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~-~~v~--~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+.    +.+. ..++  |..+  +..+.+.+.++.+ -
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   78 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITD--RDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4688999986 8999999998888899 8999998876655432    2232 1222  2221  1223333333221 1


Q ss_pred             CCccEEEEccC
Q 024295          155 MGVDYCFECTG  165 (269)
Q Consensus       155 ~~~d~v~d~~g  165 (269)
                      .++|+++.+.|
T Consensus        79 ~~~d~vi~~ag   89 (250)
T TIGR03206        79 GPVDVLVNNAG   89 (250)
T ss_pred             CCCCEEEECCC
Confidence            26899999886

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=95.98  E-value=0.06  Score=41.61  Aligned_cols=72  Identities=22%  Similarity=0.225  Sum_probs=55.7

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      -++++++||-+|+|. |.+...|....++ ..++++.++++.....+.|.. |+.      .+..+.+....++ .||+|
T Consensus        10 ~I~pgsrVLDLGCGd-G~LL~~L~~~k~v-~g~GvEid~~~v~~cv~rGv~-Viq------~Dld~gL~~f~d~-sFD~V   79 (193)
T PF07021_consen   10 WIEPGSRVLDLGCGD-GELLAYLKDEKQV-DGYGVEIDPDNVAACVARGVS-VIQ------GDLDEGLADFPDQ-SFDYV   79 (193)
T ss_pred             HcCCCCEEEecCCCc-hHHHHHHHHhcCC-eEEEEecCHHHHHHHHHcCCC-EEE------CCHHHhHhhCCCC-CccEE
Confidence            467999999999986 7777777777788 999999999998888888866 442      4555566665544 99999


Q ss_pred             EE
Q 024295          161 FE  162 (269)
Q Consensus       161 ~d  162 (269)
                      +=
T Consensus        80 Il   81 (193)
T PF07021_consen   80 IL   81 (193)
T ss_pred             eh
Confidence            74

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK06181 short chain dehydrogenase; Provisional

Probab=95.97  E-value=0.045  Score=44.75  Aligned_cols=78  Identities=15%  Similarity=0.190  Sum_probs=49.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce-e--eCCCCCCCccHHHHHHhhhC-CCC
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD-F--INPDDEPNKSISELVKGITH-GMG  156 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~~  156 (269)
                      .++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+    +..+... +  .|..+  ...+...+.+... -.+
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~   78 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSD--AEACERLIEAAVARFGG   78 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHcCC
Confidence            57999986 9999999998888899 999999887654433    2233321 1  22222  1223333333211 126


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|+++.++|.
T Consensus        79 id~vi~~ag~   88 (263)
T PRK06181         79 IDILVNNAGI   88 (263)
T ss_pred             CCEEEECCCc
Confidence            8999999864

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.97  E-value=0.059  Score=42.28  Aligned_cols=35  Identities=14%  Similarity=0.357  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      .+.+|+|+|+|++|.-.+..+...|.+++..+|..
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            46789999999999999999999999889998754

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=95.96  E-value=0.04  Score=38.96  Aligned_cols=96  Identities=23%  Similarity=0.273  Sum_probs=57.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      |.+||..|+|. |..++.+++.. ..++++++.+++..+.++.    .+.+.-++...   .++.+..... ....+|+|
T Consensus         1 g~~vlD~~~G~-G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~---~D~~~~~~~~-~~~~~D~I   74 (117)
T PF13659_consen    1 GDRVLDPGCGS-GTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIV---GDARDLPEPL-PDGKFDLI   74 (117)
T ss_dssp             TEEEEEETSTT-CHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEE---SHHHHHHHTC-TTT-EEEE
T ss_pred             CCEEEEcCcch-HHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEE---Cchhhchhhc-cCceeEEE
Confidence            45788887764 66666666655 4499999999988887765    22210011111   4444443233 33489998


Q ss_pred             EEccCC--------------hhHHHHHHHHcccCCcEEEEE
Q 024295          161 FECTGV--------------PSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       161 ~d~~g~--------------~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      +-....              ...+..+.+.++++ |.++.+
T Consensus        75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~g-G~~~~~  114 (117)
T PF13659_consen   75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPG-GVLVFI  114 (117)
T ss_dssp             EE--STTSBTT----GGCHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             EECCCCccccccchhhHHHHHHHHHHHHHHcCCC-eEEEEE
Confidence            753311              12377889999996 988765

...

>PRK06194 hypothetical protein; Provisional

Probab=95.96  E-value=0.034  Score=46.19  Aligned_cols=80  Identities=18%  Similarity=0.192  Sum_probs=49.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hh---CCCce-ee--CCCCCCCccHHHHHHhhh-CC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KA---FGMTD-FI--NPDDEPNKSISELVKGIT-HG  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~---~g~~~-v~--~~~~~~~~~~~~~i~~~~-~~  154 (269)
                      +++++||+|+ |.+|...+..+...|+ +|+.++++.++.+.. .+   .+... ++  |..+  ..++.+.+.+.. ..
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~   81 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSD--AAQVEALADAALERF   81 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            3578999986 8999999988888899 899999876655443 22   23221 12  2222  122322222221 11


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus        82 g~id~vi~~Ag~   93 (287)
T PRK06194         82 GAVHLLFNNAGV   93 (287)
T ss_pred             CCCCEEEECCCC
Confidence            268999999874

>PRK05875 short chain dehydrogenase; Provisional

Probab=95.96  E-value=0.048  Score=44.94  Aligned_cols=79  Identities=19%  Similarity=0.296  Sum_probs=49.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-h---CC--Cc-eee--CCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-A---FG--MT-DFI--NPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~---~g--~~-~v~--~~~~~~~~~~~~~i~~~~~  153 (269)
                      +++++||+|+ |.+|...++.+...|+ +|+.+++++++.+... +   .+  .. .++  |-.+  +.+..+.+.+...
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   82 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD--EDQVARAVDAATA   82 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC--HHHHHHHHHHHHH
Confidence            4689999996 8999999999998999 8999998876544332 2   11  11 122  3222  1223333333221


Q ss_pred             -CCCccEEEEccC
Q 024295          154 -GMGVDYCFECTG  165 (269)
Q Consensus       154 -~~~~d~v~d~~g  165 (269)
                       ..++|+++.++|
T Consensus        83 ~~~~~d~li~~ag   95 (276)
T PRK05875         83 WHGRLHGVVHCAG   95 (276)
T ss_pred             HcCCCCEEEECCC
Confidence             127899999886

>PRK06172 short chain dehydrogenase; Provisional

Probab=95.96  E-value=0.038  Score=44.91  Aligned_cols=80  Identities=21%  Similarity=0.295  Sum_probs=49.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-DF--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+    ++.+.. ..  .|-.+  .....+.+.+... -
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~~   82 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTR--DAEVKALVEQTIAAY   82 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHh
Confidence            4689999986 8999999888888899 899999987664433    233322 12  22222  1222222222211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|+++.+.|.
T Consensus        83 g~id~li~~ag~   94 (253)
T PRK06172         83 GRLDYAFNNAGI   94 (253)
T ss_pred             CCCCEEEECCCC
Confidence            278999998874

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.96  E-value=0.12  Score=43.03  Aligned_cols=76  Identities=21%  Similarity=0.240  Sum_probs=54.9

Q ss_pred             CCCCeEEEEcCCh-hHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           83 EKGSSVAVLGLGT-VGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        83 ~~~~~vlI~G~g~-~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      -+|++++|+|.|. +|...+.++...|+ .|+...+..                      .++.+.+      ..+|+++
T Consensus       157 l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t----------------------~~L~~~~------~~aDIvI  207 (283)
T PRK14192        157 LAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRT----------------------QNLPELV------KQADIIV  207 (283)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCc----------------------hhHHHHh------ccCCEEE
Confidence            4789999999876 99999999999999 888776411                      2222222      2789999


Q ss_pred             EccCChhHHHHHHHHcccCCcEEEEEccC
Q 024295          162 ECTGVPSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      +++|.+..+.  .+.++++ ..++.+|..
T Consensus       208 ~AtG~~~~v~--~~~lk~g-avViDvg~n  233 (283)
T PRK14192        208 GAVGKPELIK--KDWIKQG-AVVVDAGFH  233 (283)
T ss_pred             EccCCCCcCC--HHHcCCC-CEEEEEEEe
Confidence            9998765333  3568885 788888744

>PRK06138 short chain dehydrogenase; Provisional

Probab=95.96  E-value=0.049  Score=44.14  Aligned_cols=80  Identities=18%  Similarity=0.184  Sum_probs=49.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C--CCc-eee--CCCCCCCccHHHHHHhhhC-CC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F--GMT-DFI--NPDDEPNKSISELVKGITH-GM  155 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~--g~~-~v~--~~~~~~~~~~~~~i~~~~~-~~  155 (269)
                      +++++||+|+ |.+|...++.+...|+ +|+.+++++++.+...+ +  +.. ..+  |..+  +....+.+.+... -.
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~i~~~~~   80 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIAAGGRAFARQGDVGS--AEAVEALVDFVAARWG   80 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHcC
Confidence            4678999986 9999999888888898 89999988765544322 2  321 122  2222  1222222222211 13


Q ss_pred             CccEEEEccCC
Q 024295          156 GVDYCFECTGV  166 (269)
Q Consensus       156 ~~d~v~d~~g~  166 (269)
                      ++|+++.+.|.
T Consensus        81 ~id~vi~~ag~   91 (252)
T PRK06138         81 RLDVLVNNAGF   91 (252)
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>PRK12367 short chain dehydrogenase; Provisional

Probab=95.95  E-value=0.062  Score=43.72  Aligned_cols=73  Identities=19%  Similarity=0.345  Sum_probs=46.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCc-chHHHHHhCCCcee--eCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNP-WKKEKGKAFGMTDF--INPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~-~~~~~~~~~g~~~v--~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      ++++++|+|+ |.+|.+.++.+...|+ +|+++++++ ++.+... .+....  .|-.+   .   +.+.+.. + .+|+
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~~~~~~~~~-~~~~~~~~~D~~~---~---~~~~~~~-~-~iDi   82 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSKINNSESND-ESPNEWIKWECGK---E---ESLDKQL-A-SLDV   82 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCchhhhhhhc-cCCCeEEEeeCCC---H---HHHHHhc-C-CCCE
Confidence            3688999986 8999999998888999 999998876 2222111 111122  22221   1   1222322 2 6999


Q ss_pred             EEEccCC
Q 024295          160 CFECTGV  166 (269)
Q Consensus       160 v~d~~g~  166 (269)
                      +++++|.
T Consensus        83 lVnnAG~   89 (245)
T PRK12367         83 LILNHGI   89 (245)
T ss_pred             EEECCcc
Confidence            9999874

>PRK07577 short chain dehydrogenase; Provisional

Probab=95.95  E-value=0.042  Score=44.02  Aligned_cols=75  Identities=20%  Similarity=0.205  Sum_probs=48.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc-eeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT-DFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      +++++||+|+ |.+|...++.+...|+ +|+.++++.++.     .... ...|..+  .....+.+.+.....+.|+++
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~~~~-----~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~d~vi   73 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSAIDD-----FPGELFACDLAD--IEQTAATLAQINEIHPVDAIV   73 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCcccc-----cCceEEEeeCCC--HHHHHHHHHHHHHhCCCcEEE
Confidence            3578999986 8999999988888898 999999876541     1111 1223322  233333344433333689999


Q ss_pred             EccCC
Q 024295          162 ECTGV  166 (269)
Q Consensus       162 d~~g~  166 (269)
                      .+.|.
T Consensus        74 ~~ag~   78 (234)
T PRK07577         74 NNVGI   78 (234)
T ss_pred             ECCCC
Confidence            98874

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.95  E-value=0.049  Score=44.24  Aligned_cols=79  Identities=15%  Similarity=0.114  Sum_probs=49.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-eee--CCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DFI--NPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v~--~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.+    .+.. +.+  |..+  .....+.+.+... -
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   83 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGE--MEQIDALFAHIRERH   83 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4678999986 8999999999988999 99999988765544322    2321 222  2222  1222222322211 1


Q ss_pred             CCccEEEEccC
Q 024295          155 MGVDYCFECTG  165 (269)
Q Consensus       155 ~~~d~v~d~~g  165 (269)
                      ..+|+++++.|
T Consensus        84 ~~id~li~~ag   94 (252)
T PRK07035         84 GRLDILVNNAA   94 (252)
T ss_pred             CCCCEEEECCC
Confidence            26899998886

>PRK05854 short chain dehydrogenase; Provisional

Probab=95.94  E-value=0.056  Score=45.67  Aligned_cols=40  Identities=30%  Similarity=0.346  Sum_probs=33.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHH
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEK  124 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~  124 (269)
                      ++++++|+|+ +++|.+.+..+...|+ +|+.++|++++.+.
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~   53 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEA   53 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            4688999986 8999999888888899 99999998776544

>PRK06101 short chain dehydrogenase; Provisional

Probab=95.92  E-value=0.055  Score=43.66  Aligned_cols=42  Identities=14%  Similarity=0.147  Sum_probs=34.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF  128 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~  128 (269)
                      .+++|+|+ |++|...+..+...|+ +|+++++++++.+.+.+.
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~   44 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQ   44 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHh
Confidence            56899986 9999988887778899 899999988877766543

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=95.92  E-value=0.11  Score=43.45  Aligned_cols=70  Identities=16%  Similarity=0.158  Sum_probs=48.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  166 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  166 (269)
                      +|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|....        .+..+.+.      ..|+||.|+..
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~~~~~~~------~aDivi~~vp~   65 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLAAGAVTA--------ETARQVTE------QADVIFTMVPD   65 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCccc--------CCHHHHHh------cCCEEEEecCC
Confidence            37789999999988887777898 99999999988888877664311        11222221      56788887765


Q ss_pred             hhHHH
Q 024295          167 PSLLS  171 (269)
Q Consensus       167 ~~~~~  171 (269)
                      .....
T Consensus        66 ~~~~~   70 (291)
T TIGR01505        66 SPQVE   70 (291)
T ss_pred             HHHHH
Confidence            43333

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=95.91  E-value=0.15  Score=45.11  Aligned_cols=102  Identities=17%  Similarity=0.200  Sum_probs=65.8

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCce--eeCCCCCCCccHHHHHHh
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMTD--FINPDDEPNKSISELVKG  150 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i~~  150 (269)
                      ....++++++||-+|+|+ |.-+.+++..++ ..+|+++|.++++.+.+++    +|.+.  ++..+.   ..+    .+
T Consensus       231 ~~l~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da---~~l----~~  302 (431)
T PRK14903        231 LLMELEPGLRVLDTCAAP-GGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADA---ERL----TE  302 (431)
T ss_pred             HHhCCCCCCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch---hhh----hh
Confidence            345788999999998876 666777777763 2389999999999888754    56543  222211   111    11


Q ss_pred             hhCCCCccEEE-E--ccCCh-------------------------hHHHHHHHHcccCCcEEEEEcc
Q 024295          151 ITHGMGVDYCF-E--CTGVP-------------------------SLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       151 ~~~~~~~d~v~-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      ..++ .||.|+ |  |+|..                         ..+..+++.+++| |.++..-.
T Consensus       303 ~~~~-~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG-G~LvYsTC  367 (431)
T PRK14903        303 YVQD-TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG-GILLYSTC  367 (431)
T ss_pred             hhhc-cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEEC
Confidence            1223 799887 3  43321                         1266788899997 98876543

>PRK08643 acetoin reductase; Validated

Probab=95.91  E-value=0.052  Score=44.17  Aligned_cols=79  Identities=15%  Similarity=0.148  Sum_probs=49.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCce-e--eCCCCCCCccHHHHHHhhhC-CC
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTD-F--INPDDEPNKSISELVKGITH-GM  155 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~  155 (269)
                      ++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+..    .+... .  .|-.+  ++...+.+.+... -.
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSD--RDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence            568999986 8999999999888999 99999988766544322    23221 1  22222  1222232333211 12


Q ss_pred             CccEEEEccCC
Q 024295          156 GVDYCFECTGV  166 (269)
Q Consensus       156 ~~d~v~d~~g~  166 (269)
                      ++|+++.+.|.
T Consensus        79 ~id~vi~~ag~   89 (256)
T PRK08643         79 DLNVVVNNAGV   89 (256)
T ss_pred             CCCEEEECCCC
Confidence            79999998864

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.91  E-value=0.062  Score=43.78  Aligned_cols=79  Identities=16%  Similarity=0.210  Sum_probs=48.2

Q ss_pred             CCCeEEEEcC---ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc--ee--eCCCCCCCccHHHHHHhhhC-CC
Q 024295           84 KGSSVAVLGL---GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT--DF--INPDDEPNKSISELVKGITH-GM  155 (269)
Q Consensus        84 ~~~~vlI~G~---g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~--~v--~~~~~~~~~~~~~~i~~~~~-~~  155 (269)
                      .++++||+|+   +++|.+.++.+...|+ +|+.++++++..+.++++...  +.  .|-.+  +++..+.+.+... -.
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~g   82 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLVDEEDLLVECDVAS--DESIERAFATIKERVG   82 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhccCceeEEeCCCCC--HHHHHHHHHHHHHHhC
Confidence            5788999986   4899999888888999 899888874433344443211  11  22222  1223333322221 12


Q ss_pred             CccEEEEccC
Q 024295          156 GVDYCFECTG  165 (269)
Q Consensus       156 ~~d~v~d~~g  165 (269)
                      .+|++++++|
T Consensus        83 ~iD~lv~nAg   92 (252)
T PRK06079         83 KIDGIVHAIA   92 (252)
T ss_pred             CCCEEEEccc
Confidence            7999999886

>PRK06179 short chain dehydrogenase; Provisional

Probab=95.90  E-value=0.03  Score=46.06  Aligned_cols=77  Identities=18%  Similarity=0.287  Sum_probs=49.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce-eeCCCCCCCccHHHHHHhhhC-CCCccEEE
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD-FINPDDEPNKSISELVKGITH-GMGVDYCF  161 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d~v~  161 (269)
                      +++++|+|+ |.+|...++.+...|+ +|+++++++++.+...  +... ..|..+  ++++.+.+.+... -..+|+++
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~--~~~~~~~D~~d--~~~~~~~~~~~~~~~g~~d~li   78 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARAAPIP--GVELLELDVTD--DASVQAAVDEVIARAGRIDVLV   78 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhccccC--CCeeEEeecCC--HHHHHHHHHHHHHhCCCCCEEE
Confidence            467999986 9999999888888899 8999998765543221  2221 223322  2333333333221 12689999


Q ss_pred             EccCC
Q 024295          162 ECTGV  166 (269)
Q Consensus       162 d~~g~  166 (269)
                      ++.|.
T Consensus        79 ~~ag~   83 (270)
T PRK06179         79 NNAGV   83 (270)
T ss_pred             ECCCC
Confidence            99974

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.89  E-value=0.061  Score=43.74  Aligned_cols=80  Identities=20%  Similarity=0.127  Sum_probs=50.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccHHHHHHhhhCC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSISELVKGITHG-  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~~~~~~-  154 (269)
                      +++++||+|+ |.+|.+.+..+...|+ +|+++++++++.+.+.+    .+..   ...|..+  .+.+...+.+.... 
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITD--EDQCANLVALALERF   80 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCC--HHHHHHHHHHHHHHc
Confidence            5688999986 8999999998888999 99999988766554432    2321   1222222  12333333322111 


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      ..+|+++.+.|.
T Consensus        81 g~~d~vi~~ag~   92 (258)
T PRK07890         81 GRVDALVNNAFR   92 (258)
T ss_pred             CCccEEEECCcc
Confidence            268999998863

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=95.89  E-value=0.054  Score=44.75  Aligned_cols=79  Identities=24%  Similarity=0.193  Sum_probs=49.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT-DF--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      ++++++|+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+.    +.+.. ..  .|..+  .......+.+... -
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~   85 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLD--KESLEQARQQILEDF   85 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4688999986 8999999999888999 8999998876554332    22322 12  22222  1223322332221 1


Q ss_pred             CCccEEEEccC
Q 024295          155 MGVDYCFECTG  165 (269)
Q Consensus       155 ~~~d~v~d~~g  165 (269)
                      ..+|++++++|
T Consensus        86 g~id~li~~ag   96 (278)
T PRK08277         86 GPCDILINGAG   96 (278)
T ss_pred             CCCCEEEECCC
Confidence            27999999887

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=95.89  E-value=0.13  Score=37.14  Aligned_cols=87  Identities=21%  Similarity=0.264  Sum_probs=50.4

Q ss_pred             EEEEcC-ChhHHHHHHHHHHcC--CCeEEEEcCC--cchHH-HHHhCCCceeeCCCCCCCccHHHHHH------------
Q 024295           88 VAVLGL-GTVGLGAVDGARMHG--AAKIIGIDKN--PWKKE-KGKAFGMTDFINPDDEPNKSISELVK------------  149 (269)
Q Consensus        88 vlI~G~-g~~G~~a~~la~~~g--~~~v~~~~~~--~~~~~-~~~~~g~~~v~~~~~~~~~~~~~~i~------------  149 (269)
                      |.|+|+ |++|..+.++.+...  + +|++..-.  -+++. .++++.+..++-.++    ...+.++            
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f-~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~----~~~~~l~~~~~~~~~~~~v   75 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKF-EVVALSAGSNIEKLAEQAREFKPKYVVIADE----EAYEELKKALPSKGPGIEV   75 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTE-EEEEEEESSTHHHHHHHHHHHT-SEEEESSH----HHHHHHHHHHHHTTSSSEE
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCce-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH----HHHHHHHHHhhhcCCCCEE
Confidence            578896 999999999999886  5 77766533  23332 346677776665542    2222222            


Q ss_pred             --------hhhCCCCccEEEEccCChhHHHHHHHHccc
Q 024295          150 --------GITHGMGVDYCFECTGVPSLLSEALETTKV  179 (269)
Q Consensus       150 --------~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~  179 (269)
                              +......+|+++.++.+-..+.-.+..++.
T Consensus        76 ~~G~~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~  113 (129)
T PF02670_consen   76 LSGPEGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKA  113 (129)
T ss_dssp             EESHHHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHT
T ss_pred             EeChHHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHC
Confidence                    323323677777766554455666666665

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=95.89  E-value=0.068  Score=44.29  Aligned_cols=78  Identities=21%  Similarity=0.214  Sum_probs=56.8

Q ss_pred             CCCeEEEEcC-ChhHHH-HHHHHHHcCCCeEEEEcCCcchHHHHHh-----CCC---ceeeCCCCCCCcc-HHHHHHhhh
Q 024295           84 KGSSVAVLGL-GTVGLG-AVDGARMHGAAKIIGIDKNPWKKEKGKA-----FGM---TDFINPDDEPNKS-ISELVKGIT  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~-a~~la~~~g~~~v~~~~~~~~~~~~~~~-----~g~---~~v~~~~~~~~~~-~~~~i~~~~  152 (269)
                      -|+|.+|+|+ .++|.+ |-++|+ .|. +|+.+.|+++|++.+++     .++   .+++|..+   ++ .-+.+++..
T Consensus        48 ~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~---~~~~ye~i~~~l  122 (312)
T KOG1014|consen   48 LGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTK---GDEVYEKLLEKL  122 (312)
T ss_pred             cCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCC---CchhHHHHHHHh
Confidence            3689999997 689976 677777 899 89999999999987643     342   34667665   33 244455555


Q ss_pred             CCCCccEEEEccCC
Q 024295          153 HGMGVDYCFECTGV  166 (269)
Q Consensus       153 ~~~~~d~v~d~~g~  166 (269)
                      .+..+-+.+|++|.
T Consensus       123 ~~~~VgILVNNvG~  136 (312)
T KOG1014|consen  123 AGLDVGILVNNVGM  136 (312)
T ss_pred             cCCceEEEEecccc
Confidence            55588899999985

>PRK08219 short chain dehydrogenase; Provisional

Probab=95.89  E-value=0.11  Score=41.16  Aligned_cols=75  Identities=11%  Similarity=0.039  Sum_probs=45.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCC-CCccEEEE
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHG-MGVDYCFE  162 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~-~~~d~v~d  162 (269)
                      .++||+|+ |.+|...+..+... . +|++++++.++.+.+.+ ...-.++..+-   .+. +.+.+.... .++|.++.
T Consensus         4 ~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~---~~~-~~~~~~~~~~~~id~vi~   77 (227)
T PRK08219          4 PTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLDELAAELPGATPFPVDL---TDP-EAIAAAVEQLGRLDVLVH   77 (227)
T ss_pred             CEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHHHHHHHhccceEEecCC---CCH-HHHHHHHHhcCCCCEEEE
Confidence            57999986 89999888777666 6 89999998776655543 21112221111   111 222222221 26999999


Q ss_pred             ccCC
Q 024295          163 CTGV  166 (269)
Q Consensus       163 ~~g~  166 (269)
                      ++|.
T Consensus        78 ~ag~   81 (227)
T PRK08219         78 NAGV   81 (227)
T ss_pred             CCCc
Confidence            8874

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.88  E-value=0.078  Score=43.14  Aligned_cols=80  Identities=20%  Similarity=0.265  Sum_probs=49.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcch--HHHHHhCCCce---eeCCCCCCCccHHHHHHhhhC-CCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWK--KEKGKAFGMTD---FINPDDEPNKSISELVKGITH-GMG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~--~~~~~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~  156 (269)
                      +++++||+|+ +++|.+.++.+...|+ +|+.+++++..  .+.+++.+...   ..|-.+  .++..+.+.+... -.+
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~   83 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEAPETQAQVEALGRKFHFITADLIQ--QKDIDSIVSQAVEVMGH   83 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHcCCeEEEEEeCCCC--HHHHHHHHHHHHHHcCC
Confidence            5788999986 8999999999888999 88888765421  22334444321   223332  2333333333211 127


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|+++++.|.
T Consensus        84 iD~lv~~ag~   93 (251)
T PRK12481         84 IDILINNAGI   93 (251)
T ss_pred             CCEEEECCCc
Confidence            9999998864

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.88  E-value=0.14  Score=36.18  Aligned_cols=92  Identities=16%  Similarity=0.173  Sum_probs=59.4

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh
Q 024295           88 VAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP  167 (269)
Q Consensus        88 vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~  167 (269)
                      |+|.|.|.+|...++.++..+. +|++++.++++.+.+++.|...+. -+    ..-.+.+++. +-..++.++-+++..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~~i~-gd----~~~~~~l~~a-~i~~a~~vv~~~~~d   73 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVEVIY-GD----ATDPEVLERA-GIEKADAVVILTDDD   73 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSEEEE-S-----TTSHHHHHHT-TGGCESEEEEESSSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhccccccc-cc----chhhhHHhhc-CccccCEEEEccCCH
Confidence            5788999999999999999665 999999999999999998855333 22    1112233332 223788888887765


Q ss_pred             hHH---HHHHHHcccCCcEEEEE
Q 024295          168 SLL---SEALETTKVGKGKVIVI  187 (269)
Q Consensus       168 ~~~---~~~~~~l~~~~G~~v~~  187 (269)
                      ..-   ...++.+.+. .+++..
T Consensus        74 ~~n~~~~~~~r~~~~~-~~ii~~   95 (116)
T PF02254_consen   74 EENLLIALLARELNPD-IRIIAR   95 (116)
T ss_dssp             HHHHHHHHHHHHHTTT-SEEEEE
T ss_pred             HHHHHHHHHHHHHCCC-CeEEEE
Confidence            332   2233444453 555544

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>TIGR00417 speE spermidine synthase

Probab=95.87  E-value=0.16  Score=42.06  Aligned_cols=101  Identities=14%  Similarity=0.071  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC-C-ceeeCCCCC--CCccHHHHHHhhhCCCCccE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG-M-TDFINPDDE--PNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g-~-~~v~~~~~~--~~~~~~~~i~~~~~~~~~d~  159 (269)
                      ..++||++|+|. |..+..+++....+++++++.+++-.+.++++- . ...++....  -..+..+.+++. + ..+|+
T Consensus        72 ~p~~VL~iG~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-~-~~yDv  148 (270)
T TIGR00417        72 NPKHVLVIGGGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-E-NTFDV  148 (270)
T ss_pred             CCCEEEEEcCCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-C-CCccE
Confidence            456999999876 556667777665668999999888777776631 1 000110000  002233333332 2 38998


Q ss_pred             EE-Ecc---C------ChhHHHHHHHHcccCCcEEEEEc
Q 024295          160 CF-ECT---G------VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       160 v~-d~~---g------~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      |+ |..   +      ....++.+.+.|+++ |.++...
T Consensus       149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pg-G~lv~~~  186 (270)
T TIGR00417       149 IIVDSTDPVGPAETLFTKEFYELLKKALNED-GIFVAQS  186 (270)
T ss_pred             EEEeCCCCCCcccchhHHHHHHHHHHHhCCC-cEEEEcC
Confidence            86 433   1      122356888999996 9998764

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.85  E-value=0.064  Score=40.45  Aligned_cols=81  Identities=12%  Similarity=0.151  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+.+|+|+|+|.+|..-++.+...|+ +|++++  ++..+.+++++... +..+.     +.+.     +-.++|+|+-+
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs--p~~~~~l~~l~~i~-~~~~~-----~~~~-----dl~~a~lViaa   77 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS--PEICKEMKELPYIT-WKQKT-----FSND-----DIKDAHLIYAA   77 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc--CccCHHHHhccCcE-EEecc-----cChh-----cCCCceEEEEC
Confidence            57899999999999988888888899 888884  44444455554211 11111     1110     11378999999


Q ss_pred             cCChhHHHHHHHHccc
Q 024295          164 TGVPSLLSEALETTKV  179 (269)
Q Consensus       164 ~g~~~~~~~~~~~l~~  179 (269)
                      ++.+. .+..+...+.
T Consensus        78 T~d~e-~N~~i~~~a~   92 (157)
T PRK06719         78 TNQHA-VNMMVKQAAH   92 (157)
T ss_pred             CCCHH-HHHHHHHHHH
Confidence            98874 4554444444

>PRK06484 short chain dehydrogenase; Validated

Probab=95.84  E-value=0.059  Score=48.90  Aligned_cols=104  Identities=17%  Similarity=0.204  Sum_probs=66.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCce---eeCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTD---FINPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      .++++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+ ++...   ..|-.+  ++...+.+.+... -..+
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i  344 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGDEHLSVQADITD--EAAVESAFAQIQARWGRL  344 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            5688999986 8999999998888999 99999998877766544 44321   223332  2233333333221 1279


Q ss_pred             cEEEEccCChh--------------------------HHHHHHHHcccCCcEEEEEccCC
Q 024295          158 DYCFECTGVPS--------------------------LLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       158 d~v~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      |++++++|...                          ..+.++..++.+ |+++.++...
T Consensus       345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-g~iv~isS~~  403 (520)
T PRK06484        345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQG-GVIVNLGSIA  403 (520)
T ss_pred             CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccC-CEEEEECchh
Confidence            99999887410                          123334455564 8999887554

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.83  E-value=0.059  Score=44.18  Aligned_cols=80  Identities=14%  Similarity=0.234  Sum_probs=47.5

Q ss_pred             CCCeEEEEcC---ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceee--CCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL---GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFI--NPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~---g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~--~~~~~~~~~~~~~i~~~~~-  153 (269)
                      +++++||+|+   +++|.+.++.+...|+ +|+.+.++++..+.+++    .+....+  |-.+  .++..+.+.+... 
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   81 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDKLEERVRKMAAELDSELVFRCDVAS--DDEINQVFADLGKH   81 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHhccCCceEEECCCCC--HHHHHHHHHHHHHH
Confidence            5788999983   4899999888888999 88887655432233322    3322222  3222  2333333333221 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      -.++|++++++|.
T Consensus        82 ~g~iD~lVnnAG~   94 (261)
T PRK08690         82 WDGLDGLVHSIGF   94 (261)
T ss_pred             hCCCcEEEECCcc
Confidence            1279999998863

>PRK08628 short chain dehydrogenase; Provisional

Probab=95.83  E-value=0.053  Score=44.19  Aligned_cols=80  Identities=18%  Similarity=0.169  Sum_probs=50.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---CCCc-ee--eCCCCCCCccHHHHHHhhhCC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA---FGMT-DF--INPDDEPNKSISELVKGITHG-M  155 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~~~i~~~~~~-~  155 (269)
                      +++++||+|+ |.+|...++.+...|+ +|+.+++++++.+..++   .+.. ..  .|..+  +......+.+.... .
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   82 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTD--DAQCRDAVEQTVAKFG   82 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHhcC
Confidence            4678999986 8999998888888899 88888888766544333   3322 12  22222  12233333332211 2


Q ss_pred             CccEEEEccCC
Q 024295          156 GVDYCFECTGV  166 (269)
Q Consensus       156 ~~d~v~d~~g~  166 (269)
                      ++|+++.++|.
T Consensus        83 ~id~vi~~ag~   93 (258)
T PRK08628         83 RIDGLVNNAGV   93 (258)
T ss_pred             CCCEEEECCcc
Confidence            79999999873

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.82  E-value=0.041  Score=42.27  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      +|+|+|+|++|...++.+...|..+++.+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            489999999999999988889998899998654

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=95.81  E-value=0.083  Score=43.88  Aligned_cols=87  Identities=17%  Similarity=0.252  Sum_probs=56.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  166 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  166 (269)
                      +|.|+|.|.+|...+..++..|. +|+++++++++.+.+.+.|.....   .   .+. +.+      ...|+||-|+..
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~~~~~---~---~~~-~~~------~~aDlVilavp~   67 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGLVDEA---S---TDL-SLL------KDCDLVILALPI   67 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCcccc---c---CCH-hHh------cCCCEEEEcCCH
Confidence            58899999999988888887888 899999999888888777642111   1   111 111      167999999875


Q ss_pred             hhH---HHHHHHHcccCCcEEEEEc
Q 024295          167 PSL---LSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       167 ~~~---~~~~~~~l~~~~G~~v~~g  188 (269)
                      ...   +..+...++++ -.+..++
T Consensus        68 ~~~~~~~~~l~~~l~~~-~ii~d~~   91 (279)
T PRK07417         68 GLLLPPSEQLIPALPPE-AIVTDVG   91 (279)
T ss_pred             HHHHHHHHHHHHhCCCC-cEEEeCc
Confidence            422   23333444453 4444443

>PRK11579 putative oxidoreductase; Provisional

Probab=95.80  E-value=0.18  Score=43.24  Aligned_cols=130  Identities=16%  Similarity=0.120  Sum_probs=73.7

Q ss_pred             eEEEEcCChhHH-HHHHH-HHHcCCCeEEEEc-CCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           87 SVAVLGLGTVGL-GAVDG-ARMHGAAKIIGID-KNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        87 ~vlI~G~g~~G~-~a~~l-a~~~g~~~v~~~~-~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      +|.|+|+|.+|. ..... .+.-++ +++++. +++++.  ..+++...++       .++.+.+    ....+|+|+-|
T Consensus         6 rvgiiG~G~i~~~~~~~~~~~~~~~-~l~av~d~~~~~~--~~~~~~~~~~-------~~~~ell----~~~~vD~V~I~   71 (346)
T PRK11579          6 RVGLIGYGYASKTFHAPLIAGTPGL-ELAAVSSSDATKV--KADWPTVTVV-------SEPQHLF----NDPNIDLIVIP   71 (346)
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCC-EEEEEECCCHHHH--HhhCCCCcee-------CCHHHHh----cCCCCCEEEEc
Confidence            689999999886 33443 334467 666654 443332  2334322222       2333333    23489999999


Q ss_pred             cCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          164 TGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       164 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      +....+.+.+..++..  |+-|++..+.... .-....+.    .+++.+.-...  +.....++.+.+++++|.+
T Consensus        72 tp~~~H~~~~~~al~a--GkhVl~EKPla~t-~~ea~~l~~~a~~~g~~l~v~~~--~R~~p~~~~~k~~i~~g~i  142 (346)
T PRK11579         72 TPNDTHFPLAKAALEA--GKHVVVDKPFTVT-LSQARELDALAKSAGRVLSVFHN--RRWDSDFLTLKALLAEGVL  142 (346)
T ss_pred             CCcHHHHHHHHHHHHC--CCeEEEeCCCCCC-HHHHHHHHHHHHHhCCEEEEEee--ccCCHHHHHHHHHHhcCCC
Confidence            9888788888888877  6777786554211 11111221    23444432221  1122457888889998875

>PRK06914 short chain dehydrogenase; Provisional

Probab=95.79  E-value=0.063  Score=44.36  Aligned_cols=78  Identities=19%  Similarity=0.200  Sum_probs=49.7

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC---cee--eCCCCCCCccHHHHHHhhhC-
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM---TDF--INPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~---~~v--~~~~~~~~~~~~~~i~~~~~-  153 (269)
                      ++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+    .+.   ..+  .|..+  ++++.+ +.+... 
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~-~~~~~~~   78 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD--QNSIHN-FQLVLKE   78 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC--HHHHHH-HHHHHHh
Confidence            567999986 8999999988888899 99999988766554422    221   112  23322  223333 433321 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      -.++|+++.+.|.
T Consensus        79 ~~~id~vv~~ag~   91 (280)
T PRK06914         79 IGRIDLLVNNAGY   91 (280)
T ss_pred             cCCeeEEEECCcc
Confidence            1278999998864

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=95.78  E-value=0.36  Score=39.79  Aligned_cols=101  Identities=13%  Similarity=0.159  Sum_probs=63.4

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhC
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      ...++++++||-+|+|+ |..++.++..++. ..|++++.++++.+.+++    .|...+.-..    .+.. .+.. ..
T Consensus        66 ~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~----~D~~-~~~~-~~  138 (264)
T TIGR00446        66 ALEPDPPERVLDMAAAP-GGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTN----FDGR-VFGA-AV  138 (264)
T ss_pred             HhCCCCcCEEEEECCCc-hHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEec----CCHH-Hhhh-hc
Confidence            34678999999998876 6666667776642 389999999988877644    5544321111    1111 1111 12


Q ss_pred             CCCccEEE-E--ccCC-------------------------hhHHHHHHHHcccCCcEEEEEc
Q 024295          154 GMGVDYCF-E--CTGV-------------------------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       154 ~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      + .||.|+ |  |+|.                         ...+..+++.+++| |+++...
T Consensus       139 ~-~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg-G~lvYst  199 (264)
T TIGR00446       139 P-KFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG-GVLVYST  199 (264)
T ss_pred             c-CCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence            2 599886 4  3332                         12567788899996 9987654

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=95.78  E-value=0.028  Score=46.89  Aligned_cols=91  Identities=20%  Similarity=0.254  Sum_probs=56.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-eeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DFINPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      ++.+||-+|+|. |..+..+++. |. +|+++|.+++..+.+++    .+.. .+..      .+....  .+ + ..||
T Consensus       120 ~~~~vLDlGcG~-G~~~~~la~~-g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~------~D~~~~--~~-~-~~fD  186 (287)
T PRK12335        120 KPGKALDLGCGQ-GRNSLYLALL-GF-DVTAVDINQQSLENLQEIAEKENLNIRTGL------YDINSA--SI-Q-EEYD  186 (287)
T ss_pred             CCCCEEEeCCCC-CHHHHHHHHC-CC-EEEEEECCHHHHHHHHHHHHHcCCceEEEE------echhcc--cc-c-CCcc
Confidence            455899999876 7777777764 77 99999999887776654    2321 1111      111100  11 2 3799


Q ss_pred             EEEEccC--------ChhHHHHHHHHcccCCcEEEEEc
Q 024295          159 YCFECTG--------VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       159 ~v~d~~g--------~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +|+...-        .+..+..+.+.+++| |.++.+.
T Consensus       187 ~I~~~~vl~~l~~~~~~~~l~~~~~~Lkpg-G~~l~v~  223 (287)
T PRK12335        187 FILSTVVLMFLNRERIPAIIKNMQEHTNPG-GYNLIVC  223 (287)
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCC-cEEEEEE
Confidence            9986531        123477888899996 9866543

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.78  E-value=0.05  Score=44.97  Aligned_cols=47  Identities=17%  Similarity=0.094  Sum_probs=39.3

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA  127 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~  127 (269)
                      ....+++++|+|+|+.+.+++..++..|+++|+++.|++++.+.+.+
T Consensus       118 ~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~  164 (272)
T PRK12550        118 QVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAE  164 (272)
T ss_pred             CCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence            34456789999999999999999999999889999999887776543

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=95.77  E-value=0.079  Score=43.17  Aligned_cols=80  Identities=18%  Similarity=0.272  Sum_probs=51.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCc-eee--CCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMT-DFI--NPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~v~--~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      .++++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+.+ ++.. ..+  |-.+  +....+.+.+... -..+
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~i   81 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAALEIGPAAIAVSLDVTR--QDSIDRIVAAAVERFGGI   81 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            3678999986 9999999999888899 99999998876665433 3321 112  2222  1233333333211 1278


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |+++.+.|.
T Consensus        82 d~li~~ag~   90 (257)
T PRK07067         82 DILFNNAAL   90 (257)
T ss_pred             CEEEECCCc
Confidence            999998763

>PRK06484 short chain dehydrogenase; Validated

Probab=95.76  E-value=0.045  Score=49.67  Aligned_cols=80  Identities=20%  Similarity=0.273  Sum_probs=53.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCce---eeCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTD---FINPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      +++++||+|+ +++|.+.++.+...|+ +|+.++++.++.+.+ ++++...   ..|-.+  ++...+.+.+... -.++
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   80 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLGPDHHALAMDVSD--EAQIREGFEQLHREFGRI   80 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEeccCC--HHHHHHHHHHHHHHhCCC
Confidence            5788999986 8999999999989999 999999888776654 3455321   223322  2333333333221 1279


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |+++++.|.
T Consensus        81 D~li~nag~   89 (520)
T PRK06484         81 DVLVNNAGV   89 (520)
T ss_pred             CEEEECCCc
Confidence            999998864

>PRK06197 short chain dehydrogenase; Provisional

Probab=95.76  E-value=0.067  Score=44.95  Aligned_cols=79  Identities=16%  Similarity=0.207  Sum_probs=49.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----Hh-C-CCc-ee--eCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KA-F-GMT-DF--INPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~-~-g~~-~v--~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .++++||+|+ |.+|.++++.+...|+ +|+.++++.++.+.+    ++ . +.. ..  .|-.+  .....+.+.++..
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~   91 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTS--LASVRAAADALRA   91 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCC--HHHHHHHHHHHHh
Confidence            5689999986 8999999888888899 899999887654432    11 1 111 11  23222  1223333333321


Q ss_pred             -CCCccEEEEccC
Q 024295          154 -GMGVDYCFECTG  165 (269)
Q Consensus       154 -~~~~d~v~d~~g  165 (269)
                       -.++|++++++|
T Consensus        92 ~~~~iD~li~nAg  104 (306)
T PRK06197         92 AYPRIDLLINNAG  104 (306)
T ss_pred             hCCCCCEEEECCc
Confidence             126999999886

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.75  E-value=0.07  Score=43.71  Aligned_cols=79  Identities=19%  Similarity=0.272  Sum_probs=47.1

Q ss_pred             CCCeEEEEcC-C--hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCcee--eCCCCCCCccHHHHHHhhhCC
Q 024295           84 KGSSVAVLGL-G--TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTDF--INPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        84 ~~~~vlI~G~-g--~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v--~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      +++++||+|+ +  ++|.+.++.+...|+ +|+..+++++..+.++    +.|....  .|-.+  ++...+.+.+....
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~--~~~v~~~~~~~~~~   83 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTN--PKSISNLFDDIKEK   83 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCC--HHHHHHHHHHHHHH
Confidence            5688999986 4  699998888888899 8888877642222222    2343322  23332  23333333332221


Q ss_pred             -CCccEEEEccC
Q 024295          155 -MGVDYCFECTG  165 (269)
Q Consensus       155 -~~~d~v~d~~g  165 (269)
                       ..+|++++++|
T Consensus        84 ~g~iDilVnnag   95 (260)
T PRK06603         84 WGSFDFLLHGMA   95 (260)
T ss_pred             cCCccEEEEccc
Confidence             26999999876

>PRK05876 short chain dehydrogenase; Provisional

Probab=95.75  E-value=0.051  Score=44.97  Aligned_cols=80  Identities=18%  Similarity=0.177  Sum_probs=50.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCce-e--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTD-F--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+.    ..+... .  .|-.+  ..++.+.+.+... -
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   81 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRH--REEVTHLADEAFRLL   81 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCC--HHHHHHHHHHHHHHc
Confidence            4688999986 8999999998888999 8998988876555432    233321 1  22222  1223222222211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|+++++.|.
T Consensus        82 g~id~li~nAg~   93 (275)
T PRK05876         82 GHVDVVFSNAGI   93 (275)
T ss_pred             CCCCEEEECCCc
Confidence            268999998873

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=95.75  E-value=0.059  Score=43.94  Aligned_cols=39  Identities=23%  Similarity=0.220  Sum_probs=32.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHH
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEK  124 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~  124 (269)
                      ++++||+|+ |.+|.+.+..+...|+ +|+.++++.++.+.
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~   41 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAAN   41 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            468999986 8999999988888899 99999988765543

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.75  E-value=0.074  Score=44.04  Aligned_cols=104  Identities=14%  Similarity=0.195  Sum_probs=63.2

Q ss_pred             CCCeEEEEcC---ChhHHHHHHHHHHcCCCeEEEEcCCcc---hHHHH-HhCCCcee--eCCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL---GTVGLGAVDGARMHGAAKIIGIDKNPW---KKEKG-KAFGMTDF--INPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~---g~~G~~a~~la~~~g~~~v~~~~~~~~---~~~~~-~~~g~~~v--~~~~~~~~~~~~~~i~~~~~-  153 (269)
                      .++++||+|+   +++|.+.++.+...|+ +|+.++++++   +.+.+ ++++....  .|-.+  .+...+.+.+... 
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~i~~~   80 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSDYVYELDVSK--PEHFKSLAESLKKD   80 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCceEEEecCCC--HHHHHHHHHHHHHH
Confidence            4688999985   4899999988888999 8988888743   22322 33443222  23332  2233333333322 


Q ss_pred             CCCccEEEEccCCh--------------h---------------HHHHHHHHcccCCcEEEEEccCC
Q 024295          154 GMGVDYCFECTGVP--------------S---------------LLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       154 ~~~~d~v~d~~g~~--------------~---------------~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      -..+|++++++|..              .               ..+..+..+..+ |+++.++...
T Consensus        81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-g~Iv~isS~~  146 (274)
T PRK08415         81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDG-ASVLTLSYLG  146 (274)
T ss_pred             cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccC-CcEEEEecCC
Confidence            12799999998731              0               123455566674 8998887543

>PRK06398 aldose dehydrogenase; Validated

Probab=95.75  E-value=0.013  Score=48.04  Aligned_cols=76  Identities=13%  Similarity=0.149  Sum_probs=47.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhC-CCCccEEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITH-GMGVDYCF  161 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~-~~~~d~v~  161 (269)
                      +++++||+|+ |.+|.+.+..+...|+ +|+.+++++++...+.    ....|-.+  +....+.+.+... -..+|+++
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~----~~~~D~~~--~~~i~~~~~~~~~~~~~id~li   77 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYNDVD----YFKVDVSN--KEQVIKGIDYVISKYGRIDILV   77 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccCceE----EEEccCCC--HHHHHHHHHHHHHHcCCCCEEE
Confidence            4689999986 8999999999998999 9999988764432110    11123322  1233333333221 12699999


Q ss_pred             EccCC
Q 024295          162 ECTGV  166 (269)
Q Consensus       162 d~~g~  166 (269)
                      ++.|.
T Consensus        78 ~~Ag~   82 (258)
T PRK06398         78 NNAGI   82 (258)
T ss_pred             ECCCC
Confidence            98863

>PRK06114 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.087  Score=42.88  Aligned_cols=80  Identities=16%  Similarity=0.135  Sum_probs=49.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcch-HHH----HHhCCCc-eee--CCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWK-KEK----GKAFGMT-DFI--NPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~-~~~----~~~~g~~-~v~--~~~~~~~~~~~~~i~~~~~-  153 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.+++++++ .+.    ++..+.. ..+  |-.+  +....+.+.+... 
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~   83 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTS--KADLRAAVARTEAE   83 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4688999986 8999999999888999 89988876532 222    2223422 122  2222  2233333333211 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      -..+|+++++.|.
T Consensus        84 ~g~id~li~~ag~   96 (254)
T PRK06114         84 LGALTLAVNAAGI   96 (254)
T ss_pred             cCCCCEEEECCCC
Confidence            1278999999874

>PRK09242 tropinone reductase; Provisional

Probab=95.74  E-value=0.081  Score=43.08  Aligned_cols=80  Identities=11%  Similarity=0.139  Sum_probs=50.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----C--CCc-ee--eCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----F--GMT-DF--INPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~--g~~-~v--~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+.+    .  +.. ..  .|..+  ..+..+.+.+...
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   84 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSD--DEDRRAILDWVED   84 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC--HHHHHHHHHHHHH
Confidence            4789999986 8999999999988999 89999988766554322    1  221 11  23222  1223332332211


Q ss_pred             -CCCccEEEEccCC
Q 024295          154 -GMGVDYCFECTGV  166 (269)
Q Consensus       154 -~~~~d~v~d~~g~  166 (269)
                       -.++|+++.+.|.
T Consensus        85 ~~g~id~li~~ag~   98 (257)
T PRK09242         85 HWDGLHILVNNAGG   98 (257)
T ss_pred             HcCCCCEEEECCCC
Confidence             1279999999974

>PRK06482 short chain dehydrogenase; Provisional

Probab=95.73  E-value=0.069  Score=44.04  Aligned_cols=78  Identities=15%  Similarity=0.189  Sum_probs=50.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCc-e--eeCCCCCCCccHHHHHHhhh-CCCCccE
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMT-D--FINPDDEPNKSISELVKGIT-HGMGVDY  159 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~--v~~~~~~~~~~~~~~i~~~~-~~~~~d~  159 (269)
                      +++||+|+ |.+|...++.+...|+ +|+++++++++.+.+++ .+.. .  ..|..+  ...+.+.+.+.. ...++|+
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   79 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLKARYGDRLWVLQLDVTD--SAAVRAVVDRAFAALGRIDV   79 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCceEEEEccCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            57999986 9999999888888899 99999998877766544 2221 1  123222  122333333321 1137899


Q ss_pred             EEEccCC
Q 024295          160 CFECTGV  166 (269)
Q Consensus       160 v~d~~g~  166 (269)
                      +|.++|.
T Consensus        80 vi~~ag~   86 (276)
T PRK06482         80 VVSNAGY   86 (276)
T ss_pred             EEECCCC
Confidence            9998864

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=95.73  E-value=0.058  Score=43.76  Aligned_cols=77  Identities=17%  Similarity=0.223  Sum_probs=49.7

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCce-e--eCCCCCCCccHHHHHHhhhC-CCCccEE
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTD-F--INPDDEPNKSISELVKGITH-GMGVDYC  160 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~~~d~v  160 (269)
                      +++|+|+ |.+|.+.+..+...|+ +|+++++++++.+.+.. ++... .  .|-.+  ...+.+.+.+... ..++|.+
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~i~~~~~~~~~~~~~id~v   78 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN--RAAIEEMLASLPAEWRNIDVL   78 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEEecCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            5899986 9999999999888899 89999998877666543 34321 1  22222  1223333332221 1279999


Q ss_pred             EEccCC
Q 024295          161 FECTGV  166 (269)
Q Consensus       161 ~d~~g~  166 (269)
                      +.++|.
T Consensus        79 i~~ag~   84 (248)
T PRK10538         79 VNNAGL   84 (248)
T ss_pred             EECCCc
Confidence            998864

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.72  E-value=0.045  Score=45.50  Aligned_cols=44  Identities=25%  Similarity=0.232  Sum_probs=37.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA  127 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~  127 (269)
                      ++++++|+|+|+.+.+++..+...|+++++++.|+.+|.+.+.+
T Consensus       126 ~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~  169 (283)
T PRK14027        126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALAD  169 (283)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHH
Confidence            46889999999999999888888999899999999887766543

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=95.71  E-value=0.14  Score=45.46  Aligned_cols=103  Identities=19%  Similarity=0.310  Sum_probs=63.9

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCce--eeCCCCCCCccHHHHHHhh
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTD--FINPDDEPNKSISELVKGI  151 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i~~~  151 (269)
                      ....+++++||-+|+|+ |.-+..+++.++. .+|++++.++++.+.+++    +|.+.  ++..+.   ..+.... ..
T Consensus       247 ~l~~~~g~~VLDl~ag~-G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~---~~~~~~~-~~  321 (434)
T PRK14901        247 LLDPQPGEVILDACAAP-GGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADS---RNLLELK-PQ  321 (434)
T ss_pred             HhCCCCcCEEEEeCCCC-chhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCCh---hhccccc-cc
Confidence            45678899999998876 6666667776542 389999999988877644    56543  222211   1111000 01


Q ss_pred             hCCCCccEEE-E--ccCC-------------------------hhHHHHHHHHcccCCcEEEEEc
Q 024295          152 THGMGVDYCF-E--CTGV-------------------------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       152 ~~~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ..+ .||.|+ |  |+|.                         ...+..+++.+++| |+++..-
T Consensus       322 ~~~-~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg-G~lvyst  384 (434)
T PRK14901        322 WRG-YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG-GTLVYAT  384 (434)
T ss_pred             ccc-cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence            112 799886 4  3431                         12477888999996 9987653

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=95.71  E-value=0.05  Score=48.87  Aligned_cols=102  Identities=19%  Similarity=0.208  Sum_probs=65.3

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC--CCceeeCCCCCCCccHHHHHHhhhCCC
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF--GMTDFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~--g~~~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      ....++++.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++.  +...-+....   .++.+   ...+..
T Consensus       260 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~---~d~~~---~~~~~~  331 (475)
T PLN02336        260 DKLDLKPGQKVLDVGCGI-GGGDFYMAENFDV-HVVGIDLSVNMISFALERAIGRKCSVEFEV---ADCTK---KTYPDN  331 (475)
T ss_pred             HhcCCCCCCEEEEEeccC-CHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhhcCCCceEEEE---cCccc---CCCCCC
Confidence            344567889999999876 7777888887788 999999998888777552  2110011000   11100   001223


Q ss_pred             CccEEEEcc-----C-ChhHHHHHHHHcccCCcEEEEEc
Q 024295          156 GVDYCFECT-----G-VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       156 ~~d~v~d~~-----g-~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .||+|+..-     . ....+..+.+.+++| |+++...
T Consensus       332 ~fD~I~s~~~l~h~~d~~~~l~~~~r~Lkpg-G~l~i~~  369 (475)
T PLN02336        332 SFDVIYSRDTILHIQDKPALFRSFFKWLKPG-GKVLISD  369 (475)
T ss_pred             CEEEEEECCcccccCCHHHHHHHHHHHcCCC-eEEEEEE
Confidence            799997531     1 234678999999997 9987764

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=95.71  E-value=0.17  Score=45.12  Aligned_cols=100  Identities=27%  Similarity=0.311  Sum_probs=63.5

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCce--eeCCCCCCCccHHHHHHh
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMTD--FINPDDEPNKSISELVKG  150 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i~~  150 (269)
                      .....+++++||-+|+|+ |..+..+++.++ ..+|++++.++++.+.+++    .|...  ++..+.   ..       
T Consensus       244 ~~l~~~~g~~VLDlgaG~-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da---~~-------  312 (445)
T PRK14904        244 LLLNPQPGSTVLDLCAAP-GGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDA---RS-------  312 (445)
T ss_pred             HhcCCCCCCEEEEECCCC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcc---cc-------
Confidence            345677899999998876 555556666542 2389999999988876654    56442  222111   11       


Q ss_pred             hhCCCCccEEE-E--ccCCh-------------------------hHHHHHHHHcccCCcEEEEEcc
Q 024295          151 ITHGMGVDYCF-E--CTGVP-------------------------SLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       151 ~~~~~~~d~v~-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      +.....||.|+ |  |+|..                         ..+..+++.+++| |+++....
T Consensus       313 ~~~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg-G~lvystc  378 (445)
T PRK14904        313 FSPEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG-GVLVYATC  378 (445)
T ss_pred             cccCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEeC
Confidence            11223799887 3  44421                         2477888899996 99887643

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.71  E-value=0.1  Score=37.59  Aligned_cols=93  Identities=20%  Similarity=0.312  Sum_probs=51.1

Q ss_pred             eEEEEcC-ChhHHHHHHHHHH-cCCCeEEEEcCCcc---hHHHHHhCCCc--eeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           87 SVAVLGL-GTVGLGAVDGARM-HGAAKIIGIDKNPW---KKEKGKAFGMT--DFINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~-~g~~~v~~~~~~~~---~~~~~~~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      +|.|+|+ |.+|...++.+.. .+.+-+-+++++++   ..+.-.-.|..  .+..+     .++    .+...  ..|+
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~-----~~l----~~~~~--~~DV   70 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT-----DDL----EELLE--EADV   70 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB-----S-H----HHHTT--H-SE
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc-----hhH----HHhcc--cCCE
Confidence            5889998 9999999999997 57734455555441   11111111111  11001     222    22222  3899


Q ss_pred             EEEccCChhHHHHHHHHcccCCcEEEEEccCCC
Q 024295          160 CFECTGVPSLLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       160 v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                      ++|++ .+......++.+.. .|.-+.+|.+..
T Consensus        71 vIDfT-~p~~~~~~~~~~~~-~g~~~ViGTTG~  101 (124)
T PF01113_consen   71 VIDFT-NPDAVYDNLEYALK-HGVPLVIGTTGF  101 (124)
T ss_dssp             EEEES--HHHHHHHHHHHHH-HT-EEEEE-SSS
T ss_pred             EEEcC-ChHHhHHHHHHHHh-CCCCEEEECCCC
Confidence            99999 45566666776666 377777776653

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.70  E-value=0.085  Score=42.06  Aligned_cols=92  Identities=13%  Similarity=0.006  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc-chHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP-WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      ++.+|||+|+|.++.-=+..+...|+ +|+++...- +....+...|.-..+. ++     +...  ++   .++++||-
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~el~~l~~~~~i~~~~-r~-----~~~~--dl---~g~~LVia   91 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSKEFLDLKKYGNLKLIK-GN-----YDKE--FI---KDKHLIVI   91 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCHHHHHHHhCCCEEEEe-CC-----CChH--Hh---CCCcEEEE
Confidence            46789999999999887777778899 888886442 1222222233222221 11     1111  11   27899999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEc
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      |++.+..-..+....+.. +.++...
T Consensus        92 ATdD~~vN~~I~~~a~~~-~~lvn~v  116 (223)
T PRK05562         92 ATDDEKLNNKIRKHCDRL-YKLYIDC  116 (223)
T ss_pred             CCCCHHHHHHHHHHHHHc-CCeEEEc
Confidence            998875545555555553 6555553

>PRK08263 short chain dehydrogenase; Provisional

Probab=95.69  E-value=0.076  Score=43.83  Aligned_cols=79  Identities=11%  Similarity=0.108  Sum_probs=50.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCc-eee--CCCCCCCccHHHHHHhhhC-CCCcc
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMT-DFI--NPDDEPNKSISELVKGITH-GMGVD  158 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~v~--~~~~~~~~~~~~~i~~~~~-~~~~d  158 (269)
                      ++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+.+ .+.. ..+  |..+  +..+.+.+.+... -.++|
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~d   79 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAEKYGDRLLPLALDVTD--RAAVFAAVETAVEHFGRLD   79 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhccCCeeEEEccCCC--HHHHHHHHHHHHHHcCCCC
Confidence            467999986 9999999888888898 89999998877665544 2211 122  2221  1223222332211 12789


Q ss_pred             EEEEccCC
Q 024295          159 YCFECTGV  166 (269)
Q Consensus       159 ~v~d~~g~  166 (269)
                      .++.++|.
T Consensus        80 ~vi~~ag~   87 (275)
T PRK08263         80 IVVNNAGY   87 (275)
T ss_pred             EEEECCCC
Confidence            99999874

>PLN02928 oxidoreductase family protein

Probab=95.69  E-value=0.11  Score=44.56  Aligned_cols=97  Identities=21%  Similarity=0.353  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC-----CceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG-----MTDFINPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g-----~~~v~~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      .|+++.|+|.|.+|..+++.++..|. +|++.+++..+... ..++     .....+... ...++.+.+.      ..|
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~L~ell~------~aD  228 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSWTSEPE-DGLLIPNGDVDDLVDEKG-GHEDIYEFAG------EAD  228 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCChhhh-hhhccccccccccccccC-cccCHHHHHh------hCC
Confidence            57899999999999999999999999 99999876332111 1110     000010000 0123333332      568


Q ss_pred             EEEEccCChhH-----HHHHHHHcccCCcEEEEEccC
Q 024295          159 YCFECTGVPSL-----LSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       159 ~v~d~~g~~~~-----~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      +|+.++...+.     -...+..++++ ..+|.++..
T Consensus       229 iVvl~lPlt~~T~~li~~~~l~~Mk~g-a~lINvaRG  264 (347)
T PLN02928        229 IVVLCCTLTKETAGIVNDEFLSSMKKG-ALLVNIARG  264 (347)
T ss_pred             EEEECCCCChHhhcccCHHHHhcCCCC-eEEEECCCc
Confidence            88887743221     24667788885 888887744

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=95.68  E-value=0.1  Score=42.43  Aligned_cols=80  Identities=19%  Similarity=0.259  Sum_probs=50.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-DF--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+    +..+.. ..  .|-.+  .+.+.+.+.+... -
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   84 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTH--KQEVEAAIEHIEKDI   84 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCC--HHHHHHHHHHHHHhc
Confidence            4688999986 8999999988888899 999999887655443    222322 12  22222  2233333332211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|+++.+.|.
T Consensus        85 ~~id~vi~~ag~   96 (254)
T PRK08085         85 GPIDVLINNAGI   96 (254)
T ss_pred             CCCCEEEECCCc
Confidence            279999998874

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=95.68  E-value=0.24  Score=38.72  Aligned_cols=98  Identities=18%  Similarity=0.192  Sum_probs=63.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      +...+|-+|+|. |..+..+++.....++++++.+++..+.+++    .+..  .++.      .+..+......+...+
T Consensus        16 ~~~~ilDiGcG~-G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~------~d~~~~~~~~~~~~~~   88 (194)
T TIGR00091        16 KAPLHLEIGCGK-GRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLC------GDANELLDKFFPDGSL   88 (194)
T ss_pred             CCceEEEeCCCc-cHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEc------cCHHHHHHhhCCCCce
Confidence            456788889987 8888889987644499999998877666543    2322  2222      3333333333333368


Q ss_pred             cEEEEccCC--------------hhHHHHHHHHcccCCcEEEEEcc
Q 024295          158 DYCFECTGV--------------PSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       158 d~v~d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      |.++-....              +..+..+.+.|++| |.+.....
T Consensus        89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg-G~l~~~td  133 (194)
T TIGR00091        89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKG-GVIHFKTD  133 (194)
T ss_pred             eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCC-CEEEEEeC
Confidence            888654322              23578899999997 99877643

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=95.67  E-value=0.066  Score=45.38  Aligned_cols=79  Identities=23%  Similarity=0.246  Sum_probs=49.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCC---Cc-ee--eCCCCCCCccHHHHHHhhh-CC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFG---MT-DF--INPDDEPNKSISELVKGIT-HG  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g---~~-~v--~~~~~~~~~~~~~~i~~~~-~~  154 (269)
                      +++++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+. ++.   .. ..  .|-.+  .....+.+.+.. ..
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~   81 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGD--LDSVRRFVDDFRALG   81 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCC--HHHHHHHHHHHHHhC
Confidence            4678999986 8999999888888898 9999998877665442 232   11 11  23222  122222232221 12


Q ss_pred             CCccEEEEccC
Q 024295          155 MGVDYCFECTG  165 (269)
Q Consensus       155 ~~~d~v~d~~g  165 (269)
                      ..+|++++++|
T Consensus        82 ~~iD~li~nAg   92 (322)
T PRK07453         82 KPLDALVCNAA   92 (322)
T ss_pred             CCccEEEECCc
Confidence            36999999887

>PRK09186 flagellin modification protein A; Provisional

Probab=95.67  E-value=0.085  Score=42.85  Aligned_cols=79  Identities=18%  Similarity=0.241  Sum_probs=50.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhC----CCc---e-eeCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAF----GMT---D-FINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~----g~~---~-v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      +++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+ +++    +..   . ..|-.+  ++.+.+.+.+...
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~   79 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD--QESLEEFLSKSAE   79 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC--HHHHHHHHHHHHH
Confidence            4688999986 8999999988888899 899999887765543 222    211   1 223332  2333333333211


Q ss_pred             -CCCccEEEEccC
Q 024295          154 -GMGVDYCFECTG  165 (269)
Q Consensus       154 -~~~~d~v~d~~g  165 (269)
                       -.++|+++++.+
T Consensus        80 ~~~~id~vi~~A~   92 (256)
T PRK09186         80 KYGKIDGAVNCAY   92 (256)
T ss_pred             HcCCccEEEECCc
Confidence             126899999875

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=95.66  E-value=0.039  Score=44.98  Aligned_cols=98  Identities=20%  Similarity=0.225  Sum_probs=61.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHc---CCCeEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHhhhCC
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMH---GAAKIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~---g~~~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      +.++.+||.+|+|. |..+..+++..   +. ++++++.+++..+.+++.    +...-+....   .++.    +....
T Consensus        54 ~~~~~~vLDlGcGt-G~~~~~l~~~~~~~~~-~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~---~d~~----~~~~~  124 (247)
T PRK15451         54 VQPGTQVYDLGCSL-GAATLSVRRNIHHDNC-KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIE---GDIR----DIAIE  124 (247)
T ss_pred             CCCCCEEEEEcccC-CHHHHHHHHhcCCCCC-eEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEe---CChh----hCCCC
Confidence            56788999999876 77777777742   45 999999999888877652    2211111111   2221    11112


Q ss_pred             CCccEEEEcc-----CC---hhHHHHHHHHcccCCcEEEEEccC
Q 024295          155 MGVDYCFECT-----GV---PSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       155 ~~~d~v~d~~-----g~---~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                       .+|+++-..     ..   ...+..+.+.|++| |.++.....
T Consensus       125 -~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpG-G~l~l~e~~  166 (247)
T PRK15451        125 -NASMVVLNFTLQFLEPSERQALLDKIYQGLNPG-GALVLSEKF  166 (247)
T ss_pred             -CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCC-CEEEEEEec
Confidence             577776432     11   23678999999997 999887643

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.65  E-value=0.054  Score=43.77  Aligned_cols=80  Identities=18%  Similarity=0.133  Sum_probs=49.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-eee--CCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-DFI--NPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v~--~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      .++++||+|+ |.+|...+..+...|+ +|++++++.++...+    +..+.. .++  |..+  ...+.+.+.+... -
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   81 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRD--RAALKAAVAAGVEDF   81 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHh
Confidence            4678999986 9999999888888899 999999886544332    223321 122  2222  1223333322211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      ..+|.++.+.+.
T Consensus        82 ~~~d~vi~~ag~   93 (251)
T PRK12826         82 GRLDILVANAGI   93 (251)
T ss_pred             CCCCEEEECCCC
Confidence            268999998854

>PRK08589 short chain dehydrogenase; Validated

Probab=95.65  E-value=0.068  Score=44.09  Aligned_cols=79  Identities=16%  Similarity=0.237  Sum_probs=48.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHh---CCCc-e--eeCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEK-GKA---FGMT-D--FINPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~-~~~---~g~~-~--v~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ +.+|.+.++.+...|+ +|++++++ ++.+. +++   .+.. .  ..|-.+  +......+.+... -
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   80 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISD--EQQVKDFASEIKEQF   80 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCC--HHHHHHHHHHHHHHc
Confidence            4789999986 8999999888888899 99999988 43332 322   2321 1  223322  1223333333221 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      ..+|++++++|.
T Consensus        81 g~id~li~~Ag~   92 (272)
T PRK08589         81 GRVDVLFNNAGV   92 (272)
T ss_pred             CCcCEEEECCCC
Confidence            268999998864

>PRK08251 short chain dehydrogenase; Provisional

Probab=95.64  E-value=0.095  Score=42.36  Aligned_cols=78  Identities=17%  Similarity=0.224  Sum_probs=49.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----C--CCc-eee--CCCCCCCccHHHHHHhhhC-
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----F--GMT-DFI--NPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~--g~~-~v~--~~~~~~~~~~~~~i~~~~~-  153 (269)
                      ++++||+|+ |.+|...+..+...|+ +|+.+++++++.+.+..    .  +.. +++  |..+  ...+.+.+.++.. 
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   78 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVND--HDQVFEVFAEFRDE   78 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            468999986 9999988887777898 89999988876654432    1  211 122  3332  2233333333321 


Q ss_pred             CCCccEEEEccC
Q 024295          154 GMGVDYCFECTG  165 (269)
Q Consensus       154 ~~~~d~v~d~~g  165 (269)
                      -.++|+++.+.|
T Consensus        79 ~~~id~vi~~ag   90 (248)
T PRK08251         79 LGGLDRVIVNAG   90 (248)
T ss_pred             cCCCCEEEECCC
Confidence            127999999886

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=95.64  E-value=0.15  Score=40.73  Aligned_cols=101  Identities=16%  Similarity=0.167  Sum_probs=60.2

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCcee---------eCCCCCCCccHHHHHHh
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDF---------INPDDEPNKSISELVKG  150 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v---------~~~~~~~~~~~~~~i~~  150 (269)
                      .+.++.+||+.|+|. |.-+..||. .|. +|++++.++.-.+.+ ++.+....         ....+  ..-+...+.+
T Consensus        34 ~~~~~~rvL~~gCG~-G~da~~LA~-~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~--v~~~~~D~~~  108 (218)
T PRK13255         34 ALPAGSRVLVPLCGK-SLDMLWLAE-QGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGE--ITIYCGDFFA  108 (218)
T ss_pred             CCCCCCeEEEeCCCC-hHhHHHHHh-CCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCc--eEEEECcccC
Confidence            455678999999986 888888875 699 999999998877754 33332100         00000  0000000111


Q ss_pred             hh--CCCCccEEEEccC--------ChhHHHHHHHHcccCCcEEEEE
Q 024295          151 IT--HGMGVDYCFECTG--------VPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       151 ~~--~~~~~d~v~d~~g--------~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      +.  ....||.|+|..-        .+..+..+.+.|++| |+++++
T Consensus       109 l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg-G~~~l~  154 (218)
T PRK13255        109 LTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG-CRGLLV  154 (218)
T ss_pred             CCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC-CeEEEE
Confidence            11  1126899998652        123478888999996 875543

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.64  E-value=0.31  Score=41.34  Aligned_cols=39  Identities=28%  Similarity=0.433  Sum_probs=33.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG  125 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~  125 (269)
                      ++|.|+|+|.+|...++.+...|. +|+..+++++..+.+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~   46 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAAL   46 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHH
Confidence            679999999999998888888899 999999988765543

>PRK07832 short chain dehydrogenase; Provisional

Probab=95.64  E-value=0.12  Score=42.67  Aligned_cols=77  Identities=17%  Similarity=0.261  Sum_probs=47.7

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc--e--eeCCCCCCCccHHHHHHhhhC-CCC
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT--D--FINPDDEPNKSISELVKGITH-GMG  156 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~--~--v~~~~~~~~~~~~~~i~~~~~-~~~  156 (269)
                      +++|+|+ |++|..+++.+...|+ +|+.+++++++.+.+    +..+..  .  ..|-.+  +....+.+.+... ..+
T Consensus         2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~   78 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISD--YDAVAAFAADIHAAHGS   78 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCC--HHHHHHHHHHHHHhcCC
Confidence            6899986 8999999998888899 899998887654433    223322  1  233332  1222222222211 126


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|+++++.|.
T Consensus        79 id~lv~~ag~   88 (272)
T PRK07832         79 MDVVMNIAGI   88 (272)
T ss_pred             CCEEEECCCC
Confidence            9999999874

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=95.63  E-value=0.13  Score=45.77  Aligned_cols=103  Identities=17%  Similarity=0.245  Sum_probs=63.2

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhh
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      ....++++++||-+|+|+ |..+..+++..+ ..+|++++.++++.+.+++    .|.+. +....   .+..+....+ 
T Consensus       244 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~---~D~~~~~~~~-  317 (444)
T PRK14902        244 PALDPKGGDTVLDACAAP-GGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKA---LDARKVHEKF-  317 (444)
T ss_pred             HHhCCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEe---CCcccccchh-
Confidence            345678899999998876 666667777652 3389999999988776654    55443 11111   1111111111 


Q ss_pred             CCCCccEEE-E--ccCC-------------------------hhHHHHHHHHcccCCcEEEEEc
Q 024295          153 HGMGVDYCF-E--CTGV-------------------------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       153 ~~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      . ..||.|+ |  |.|.                         ...+..+++.+++| |+++...
T Consensus       318 ~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG-G~lvyst  379 (444)
T PRK14902        318 A-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG-GILVYST  379 (444)
T ss_pred             c-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEc
Confidence            1 2799886 4  3322                         12467788899997 9998643

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=95.63  E-value=0.18  Score=41.98  Aligned_cols=109  Identities=14%  Similarity=0.086  Sum_probs=71.3

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC----C-ceeeCCCC-CCCccHHHHHHhhhCCC
Q 024295           83 EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG----M-TDFINPDD-EPNKSISELVKGITHGM  155 (269)
Q Consensus        83 ~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g----~-~~v~~~~~-~~~~~~~~~i~~~~~~~  155 (269)
                      .+++.|||+|+ ++.|..++.-+...|. +|++.+-.++..+.++..-    . +..+|-.+ .+.....+.+++..++.
T Consensus        27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf-~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~  105 (322)
T KOG1610|consen   27 LSDKAVLITGCDSGFGRLLAKKLDKKGF-RVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGED  105 (322)
T ss_pred             cCCcEEEEecCCcHHHHHHHHHHHhcCC-EEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcccc
Confidence            35678999997 9999988888888899 9999997777766654421    1 22333222 01222333444555666


Q ss_pred             CccEEEEccCCh--------------------------hHHHHHHHHcccCCcEEEEEccCCC
Q 024295          156 GVDYCFECTGVP--------------------------SLLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       156 ~~d~v~d~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                      +.=-++|++|..                          ......+.++++..||+|.++...+
T Consensus       106 gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~G  168 (322)
T KOG1610|consen  106 GLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLG  168 (322)
T ss_pred             cceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEeccccc
Confidence            788888888721                          1234556667765699999987765

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.63  E-value=0.034  Score=41.46  Aligned_cols=97  Identities=18%  Similarity=0.185  Sum_probs=56.1

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCC---CCccHHHHHHhhhCCCCccEEEEcc
Q 024295           88 VAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDE---PNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        88 vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~---~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      |+|+|+|++|......++..|. +|..+.+++ +.+.+++.|........+.   .+......  . .....+|++|-|+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~D~viv~v   75 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAP--S-ADAGPYDLVIVAV   75 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSH--G-HHHSTESEEEE-S
T ss_pred             CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcc--h-hccCCCcEEEEEe
Confidence            6899999999988888877888 999999887 7777766553211111000   00000000  0 1123899999999


Q ss_pred             CChh---HHHHHHHHcccCCcEEEEEccC
Q 024295          165 GVPS---LLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       165 g~~~---~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      -...   .++.+...+.++ ..++.+-..
T Consensus        76 Ka~~~~~~l~~l~~~~~~~-t~iv~~qNG  103 (151)
T PF02558_consen   76 KAYQLEQALQSLKPYLDPN-TTIVSLQNG  103 (151)
T ss_dssp             SGGGHHHHHHHHCTGEETT-EEEEEESSS
T ss_pred             cccchHHHHHHHhhccCCC-cEEEEEeCC
Confidence            5542   233444444553 567776443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=95.62  E-value=0.2  Score=41.87  Aligned_cols=70  Identities=17%  Similarity=0.204  Sum_probs=48.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  166 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  166 (269)
                      +|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|... .       .++.+.+.      ..|+||.++..
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~g~~~-~-------~~~~e~~~------~~d~vi~~vp~   68 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAVAEVIAAGAET-A-------STAKAVAE------QCDVIITMLPN   68 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCee-c-------CCHHHHHh------cCCEEEEeCCC
Confidence            68899999999987777777888 8999999988887777766431 1       12222221      56888888765


Q ss_pred             hhHHH
Q 024295          167 PSLLS  171 (269)
Q Consensus       167 ~~~~~  171 (269)
                      +....
T Consensus        69 ~~~~~   73 (296)
T PRK11559         69 SPHVK   73 (296)
T ss_pred             HHHHH
Confidence            44433

>PRK06940 short chain dehydrogenase; Provisional

Probab=95.62  E-value=0.095  Score=43.34  Aligned_cols=78  Identities=21%  Similarity=0.209  Sum_probs=48.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc-eee--CCCCCCCccHHHHHHhhhCCCCc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT-DFI--NPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v~--~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      +++++|.|+|.+|.+.+..+. .|+ +|+.+++++++.+.+.    ..+.. ..+  |-.+  .+...+.+.+...-.++
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~i~~~~~~~~~~g~i   77 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSS--RESVKALAATAQTLGPV   77 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCC--HHHHHHHHHHHHhcCCC
Confidence            357888898899999888775 788 9999998876654332    22322 122  3322  23333333332111279


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus        78 d~li~nAG~   86 (275)
T PRK06940         78 TGLVHTAGV   86 (275)
T ss_pred             CEEEECCCc
Confidence            999999874

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=95.62  E-value=0.022  Score=47.62  Aligned_cols=33  Identities=33%  Similarity=0.397  Sum_probs=27.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID  116 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~  116 (269)
                      ++.+|||+|+|++|.=|+|++.+.|+.++=.+|
T Consensus        65 k~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD   97 (427)
T KOG2017|consen   65 KNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVD   97 (427)
T ss_pred             CCccEEEEccCCCCCHHHHHHHHcCCCeecccc
Confidence            468899999999999999999999986654444

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=95.62  E-value=0.065  Score=43.73  Aligned_cols=79  Identities=18%  Similarity=0.212  Sum_probs=49.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---CCCce---eeCCCCCCCccHHHHHHhhhC-CC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA---FGMTD---FINPDDEPNKSISELVKGITH-GM  155 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~  155 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.+++++...+..++   .+.+.   ..|..+  .++..+.+.+... -.
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   83 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAAELRAAGGEALALTADLET--YAGAQAAMAAAVEAFG   83 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCC--HHHHHHHHHHHHHHcC
Confidence            4688999986 8999999998888899 89999987533333322   33321   223322  1223333333211 12


Q ss_pred             CccEEEEccC
Q 024295          156 GVDYCFECTG  165 (269)
Q Consensus       156 ~~d~v~d~~g  165 (269)
                      ++|++++++|
T Consensus        84 ~id~lv~nAg   93 (260)
T PRK12823         84 RIDVLINNVG   93 (260)
T ss_pred             CCeEEEECCc
Confidence            7999999886

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=95.61  E-value=0.084  Score=42.99  Aligned_cols=80  Identities=21%  Similarity=0.221  Sum_probs=48.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhCCCc-ee--eCCCCCCCccHHHHHHhhhC-CCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW--KKEKGKAFGMT-DF--INPDDEPNKSISELVKGITH-GMG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~--~~~~~~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~  156 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.+++++.  ..+.+++.+.. ..  .|-.+  .++..+.+.+... ..+
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~   85 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEPTETIEQVTALGRRFLSLTADLRK--IDGIPALLERAVAEFGH   85 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcchHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHhCC
Confidence            4688999986 8999999999988999 8888876532  22333344422 11  22221  1223333332211 127


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|++++++|.
T Consensus        86 ~D~li~~Ag~   95 (253)
T PRK08993         86 IDILVNNAGL   95 (253)
T ss_pred             CCEEEECCCC
Confidence            9999998874

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.61  E-value=0.074  Score=45.82  Aligned_cols=35  Identities=31%  Similarity=0.323  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      .+.+|||+|+|++|..+++.+...|..+++.+|.+
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D   61 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD   61 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            45789999999999999999999999999999865

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.61  E-value=0.096  Score=42.53  Aligned_cols=80  Identities=23%  Similarity=0.219  Sum_probs=50.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc-e--eeCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT-D--FINPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~--v~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.    ..+.. +  ..|..+  +....+.+.+... .
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   79 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTD--EEAINAGIDYAVETF   79 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4578999985 9999999988888899 9999999877655432    22321 1  223222  1222222222211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|+++.+++.
T Consensus        80 ~~~d~vi~~a~~   91 (258)
T PRK12429         80 GGVDILVNNAGI   91 (258)
T ss_pred             CCCCEEEECCCC
Confidence            279999998863

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.60  E-value=0.095  Score=42.63  Aligned_cols=80  Identities=18%  Similarity=0.197  Sum_probs=51.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCC--ce-eeCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGM--TD-FINPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~--~~-v~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      ++++++|+|+ |.+|...+..+...|+ +|+.+++++++.+.+    ++.+.  .. ..|..+  +.++.+.+.+... -
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   86 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIAD--EEAVAAAFARIDAEH   86 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHhc
Confidence            5789999986 8999999988888899 999999987655443    22332  11 123222  2333333333221 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      ..+|.++.++|.
T Consensus        87 ~~id~vi~~ag~   98 (256)
T PRK06124         87 GRLDILVNNVGA   98 (256)
T ss_pred             CCCCEEEECCCC
Confidence            278999998874

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=95.60  E-value=0.043  Score=41.00  Aligned_cols=96  Identities=26%  Similarity=0.330  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHHhhhCC
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMH--GAAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~--g~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      +++.+||-+|+|. |..+..+++..  +. +++++|.+++..+.+++    .+.+  .++..      ++.+ +....+ 
T Consensus         2 ~~~~~iLDlGcG~-G~~~~~l~~~~~~~~-~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~------d~~~-l~~~~~-   71 (152)
T PF13847_consen    2 KSNKKILDLGCGT-GRLLIQLAKELNPGA-KIIGVDISEEMIEYAKKRAKELGLDNIEFIQG------DIED-LPQELE-   71 (152)
T ss_dssp             TTTSEEEEET-TT-SHHHHHHHHHSTTTS-EEEEEESSHHHHHHHHHHHHHTTSTTEEEEES------BTTC-GCGCSS-
T ss_pred             CCCCEEEEecCcC-cHHHHHHHHhcCCCC-EEEEEECcHHHHHHhhcccccccccccceEEe------ehhc-cccccC-
Confidence            4678899999876 77788888544  44 99999999988888765    4543  22221      1111 111011 


Q ss_pred             CCccEEEEcc-----CC-hhHHHHHHHHcccCCcEEEEEcc
Q 024295          155 MGVDYCFECT-----GV-PSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       155 ~~~d~v~d~~-----g~-~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      ..||+|+...     .. ...++.+.+.++++ |.++....
T Consensus        72 ~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~-G~~i~~~~  111 (152)
T PF13847_consen   72 EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPG-GILIISDP  111 (152)
T ss_dssp             TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCeeEEEEcCchhhccCHHHHHHHHHHHcCCC-cEEEEEEC
Confidence            3899998753     21 23578889999996 98876643

...

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=95.59  E-value=0.0091  Score=41.95  Aligned_cols=39  Identities=21%  Similarity=0.248  Sum_probs=29.6

Q ss_pred             ccccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEc
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKV   53 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~v   53 (269)
                      -.+|+++.+|++ ||+|+...                           .+|+||||+.+++++++|+
T Consensus        44 ~~vG~~v~~~~~-Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   44 VAVGPGVTDFKV-GDRVVVSPNIGCGECEYCLSGRPNLCPNPEVLGLGLDGGFAEYVVVPARNLVPV  109 (109)
T ss_dssp             EEESTTTTSSGT-T-EEEEESEEETSSSHHHHTTTGGGTTTBEETTTSSTCSSBSEEEEEGGGEEEE
T ss_pred             eeeccccccccc-cceeeeecccCccCchhhcCCccccCCCCCEeEcCCCCcccCeEEEehHHEEEC
Confidence            345788888998 99986421                           1399999999999999875

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.57  E-value=0.15  Score=43.32  Aligned_cols=95  Identities=19%  Similarity=0.104  Sum_probs=62.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCcee------eCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF------INPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v------~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      -+|.|+|+|.+|.+....+...|. .|...++++++.+.++..+....      +..+-....+..+.+      ...|+
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~------~~aD~   77 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEAL------AGADF   77 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH------cCCCE
Confidence            368999999999999888888888 89999998887776665321100      000000002222222      16899


Q ss_pred             EEEccCChhHHHHHHHHcccCCcEEEEEcc
Q 024295          160 CFECTGVPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       160 v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      |+-++... .+...++.++++ -.++.+..
T Consensus        78 Vi~~v~~~-~~~~v~~~l~~~-~~vi~~~~  105 (328)
T PRK14618         78 AVVAVPSK-ALRETLAGLPRA-LGYVSCAK  105 (328)
T ss_pred             EEEECchH-HHHHHHHhcCcC-CEEEEEee
Confidence            99999876 557788888884 56665543

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=95.56  E-value=0.073  Score=45.10  Aligned_cols=96  Identities=18%  Similarity=0.145  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC----CceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG----MTDFINPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g----~~~v~~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      .++.+||-+|+|. |..+..+++ .|+ +|+++|.+++..+.+++..    ...-+.+..   .+.. .+. . ....||
T Consensus       130 ~~g~~ILDIGCG~-G~~s~~La~-~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~---~dae-~l~-~-~~~~FD  200 (322)
T PLN02396        130 FEGLKFIDIGCGG-GLLSEPLAR-MGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLC---TTAE-KLA-D-EGRKFD  200 (322)
T ss_pred             CCCCEEEEeeCCC-CHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEe---cCHH-Hhh-h-ccCCCC
Confidence            4677899999876 666666665 577 9999999998888886521    111111111   2221 121 1 123799


Q ss_pred             EEEEc-----cC-ChhHHHHHHHHcccCCcEEEEEc
Q 024295          159 YCFEC-----TG-VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       159 ~v~d~-----~g-~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +|+-.     +. ....+..+.+.+++| |.++..-
T Consensus       201 ~Vi~~~vLeHv~d~~~~L~~l~r~LkPG-G~liist  235 (322)
T PLN02396        201 AVLSLEVIEHVANPAEFCKSLSALTIPN-GATVLST  235 (322)
T ss_pred             EEEEhhHHHhcCCHHHHHHHHHHHcCCC-cEEEEEE
Confidence            99632     22 233578888999997 9887663

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.56  E-value=0.11  Score=46.64  Aligned_cols=70  Identities=26%  Similarity=0.322  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcc-----hHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW-----KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~-----~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      .+++|+|+|+|.+|+.++.+++..|. +|++++++++     ..+.+++.|.........   .        .  ..++|
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~---~--------~--~~~~D   80 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGATVRLGPGP---T--------L--PEDTD   80 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc---c--------c--cCCCC
Confidence            46789999999999999999999999 8999986542     223456677665443321   1        0  12678


Q ss_pred             EEEEccCCh
Q 024295          159 YCFECTGVP  167 (269)
Q Consensus       159 ~v~d~~g~~  167 (269)
                      +|+-+.|.+
T Consensus        81 ~Vv~s~Gi~   89 (480)
T PRK01438         81 LVVTSPGWR   89 (480)
T ss_pred             EEEECCCcC
Confidence            888887753

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=95.55  E-value=0.2  Score=44.40  Aligned_cols=102  Identities=16%  Similarity=0.235  Sum_probs=64.2

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-eeeCCCCCCCccHHHHHHhhh
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      ....++++++||-+|+|+ |..+..+++..+..+|++++.++++.+.+++    +|.. .++..+.   .+.    ..+.
T Consensus       238 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~---~~~----~~~~  309 (427)
T PRK10901        238 TLLAPQNGERVLDACAAP-GGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDA---RDP----AQWW  309 (427)
T ss_pred             HHcCCCCCCEEEEeCCCC-ChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCc---ccc----hhhc
Confidence            345678999999998876 6666677776542399999999988877754    4432 2232221   111    1111


Q ss_pred             CCCCccEEE-E--ccCC-------------------------hhHHHHHHHHcccCCcEEEEEc
Q 024295          153 HGMGVDYCF-E--CTGV-------------------------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       153 ~~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ....||.|+ |  |.+.                         ...+..+.+.+++| |+++..-
T Consensus       310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpG-G~lvyst  372 (427)
T PRK10901        310 DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPG-GTLLYAT  372 (427)
T ss_pred             ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence            223699887 3  3321                         12567888899997 9988654

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.54  E-value=0.12  Score=41.40  Aligned_cols=74  Identities=18%  Similarity=0.236  Sum_probs=53.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh--CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA--FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~--~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      +++|+|+|.+|...++.+...|. .|+.+++++++.+....  +.. +++.-+    ..-.+.+++. +=..+|+++-++
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~-~~v~gd----~t~~~~L~~a-gi~~aD~vva~t   74 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDT-HVVIGD----ATDEDVLEEA-GIDDADAVVAAT   74 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcce-EEEEec----CCCHHHHHhc-CCCcCCEEEEee
Confidence            57899999999999999999999 99999999988777333  443 333332    2222334443 334899999988


Q ss_pred             CCh
Q 024295          165 GVP  167 (269)
Q Consensus       165 g~~  167 (269)
                      |..
T Consensus        75 ~~d   77 (225)
T COG0569          75 GND   77 (225)
T ss_pred             CCC
Confidence            874

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.54  E-value=0.11  Score=42.67  Aligned_cols=79  Identities=16%  Similarity=0.244  Sum_probs=47.2

Q ss_pred             CCCeEEEEcCC---hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceee--CCCCCCCccHHHHHHhhhCC
Q 024295           84 KGSSVAVLGLG---TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFI--NPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        84 ~~~~vlI~G~g---~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~--~~~~~~~~~~~~~i~~~~~~  154 (269)
                      +++++||+|++   ++|.+.++.+...|+ +|+.++++++..+.+++    .+....+  |-.+  +++..+.+.+....
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~   81 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAE--DASIDAMFAELGKV   81 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhccCCceEeecCCCC--HHHHHHHHHHHHhh
Confidence            56889999863   799998888888899 88888776321222322    2221222  3222  23333333333221


Q ss_pred             -CCccEEEEccC
Q 024295          155 -MGVDYCFECTG  165 (269)
Q Consensus       155 -~~~d~v~d~~g  165 (269)
                       ..+|++++++|
T Consensus        82 ~g~iD~linnAg   93 (262)
T PRK07984         82 WPKFDGFVHSIG   93 (262)
T ss_pred             cCCCCEEEECCc
Confidence             26999999986

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=95.53  E-value=0.25  Score=41.69  Aligned_cols=86  Identities=23%  Similarity=0.276  Sum_probs=57.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      ++++|.|+|.|.+|.+.++.++..|. +|++..+.....+.++..|+. +        .++.+.++      ..|+|+-+
T Consensus        15 kgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~~~A~~~G~~-v--------~sl~Eaak------~ADVV~ll   78 (335)
T PRK13403         15 QGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVAKADGFE-V--------MSVSEAVR------TAQVVQML   78 (335)
T ss_pred             CcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhhHHHHHcCCE-E--------CCHHHHHh------cCCEEEEe
Confidence            68999999999999999999999999 888887655555556666653 1        12222222      57899887


Q ss_pred             cCChhH---H-HHHHHHcccCCcEEEEE
Q 024295          164 TGVPSL---L-SEALETTKVGKGKVIVI  187 (269)
Q Consensus       164 ~g~~~~---~-~~~~~~l~~~~G~~v~~  187 (269)
                      +..+..   + ...+..++++  .++.+
T Consensus        79 LPd~~t~~V~~~eil~~MK~G--aiL~f  104 (335)
T PRK13403         79 LPDEQQAHVYKAEVEENLREG--QMLLF  104 (335)
T ss_pred             CCChHHHHHHHHHHHhcCCCC--CEEEE
Confidence            765332   2 2355566774  44444

>PRK08278 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.068  Score=44.14  Aligned_cols=36  Identities=25%  Similarity=0.306  Sum_probs=30.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW  120 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~  120 (269)
                      +++++||+|+ |.+|...+..+...|+ +|++++++.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~   41 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAE   41 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccc
Confidence            4678999986 8999999888888899 9999988754

>PRK07856 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.079  Score=43.04  Aligned_cols=78  Identities=18%  Similarity=0.157  Sum_probs=48.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce-eeCCCCCCCccHHHHHHhhhC-CCCccEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD-FINPDDEPNKSISELVKGITH-GMGVDYC  160 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d~v  160 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.  ........ ..|..+  ...+.+.+.+... -..+|++
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~~--~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~v   79 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPET--VDGRPAEFHAADVRD--PDQVAALVDAIVERHGRLDVL   79 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhhh--hcCCceEEEEccCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4789999986 8999999998888899 999999876541  11111211 223222  1223333332211 1268999


Q ss_pred             EEccCC
Q 024295          161 FECTGV  166 (269)
Q Consensus       161 ~d~~g~  166 (269)
                      +.++|.
T Consensus        80 i~~ag~   85 (252)
T PRK07856         80 VNNAGG   85 (252)
T ss_pred             EECCCC
Confidence            998863

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=95.52  E-value=0.082  Score=43.05  Aligned_cols=96  Identities=15%  Similarity=0.144  Sum_probs=63.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CC---------ceeeCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GM---------TDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~---------~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      +.++|||+|.|. |..+-.+++....++|.+++.+++-.+.++++ +.         -.++.      .|-...+++...
T Consensus        76 ~p~~VLiiGgG~-G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~------~Dg~~~l~~~~~  148 (246)
T PF01564_consen   76 NPKRVLIIGGGD-GGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIII------GDGRKFLKETQE  148 (246)
T ss_dssp             ST-EEEEEESTT-SHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEE------STHHHHHHTSSS
T ss_pred             CcCceEEEcCCC-hhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEE------hhhHHHHHhccC
Confidence            579999999765 66777888877677999999999888888773 21         11221      444455555433


Q ss_pred             CCCccEEE-EccC---------ChhHHHHHHHHcccCCcEEEEEc
Q 024295          154 GMGVDYCF-ECTG---------VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       154 ~~~~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      + .+|+|+ |...         ....++.+.+.|+++ |.++.-.
T Consensus       149 ~-~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~-Gv~v~~~  191 (246)
T PF01564_consen  149 E-KYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPD-GVLVLQA  191 (246)
T ss_dssp             T--EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             C-cccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCC-cEEEEEc
Confidence            3 799886 5553         123578888999996 9988764

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.51  E-value=0.28  Score=41.50  Aligned_cols=102  Identities=17%  Similarity=0.074  Sum_probs=63.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHH-HcCCCeEEEEcCCcchHHHHHh-C---CCceeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGAR-MHGAAKIIGIDKNPWKKEKGKA-F---GMTDFINPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~-~~g~~~v~~~~~~~~~~~~~~~-~---g~~~v~~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      ...++++|+|+|..|...+..+. ..+.++|.+..|++++.+.+.+ +   |.. +...     .+..+.+      .+.
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~-~~~~-----~~~~~av------~~a  190 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFD-AEVV-----TDLEAAV------RQA  190 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCc-eEEe-----CCHHHHH------hcC
Confidence            45688999999999998876444 4676799999999887665433 3   321 1111     2222233      168


Q ss_pred             cEEEEccCChhH-HHHHHHHcccCCcEEEEEccCCCccccchh
Q 024295          158 DYCFECTGVPSL-LSEALETTKVGKGKVIVIGVGVDAMVPLNV  199 (269)
Q Consensus       158 d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~  199 (269)
                      |+|+.+++.+.. +.  .+.++++ -++..+|.......+++.
T Consensus       191 DIVi~aT~s~~pvl~--~~~l~~g-~~i~~ig~~~~~~~El~~  230 (314)
T PRK06141        191 DIISCATLSTEPLVR--GEWLKPG-THLDLVGNFTPDMRECDD  230 (314)
T ss_pred             CEEEEeeCCCCCEec--HHHcCCC-CEEEeeCCCCcccccCCH
Confidence            999998876422 22  2567885 677677754433334443

>PLN02253 xanthoxin dehydrogenase

Probab=95.51  E-value=0.078  Score=43.82  Aligned_cols=80  Identities=20%  Similarity=0.161  Sum_probs=49.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCC---cee--eCCCCCCCccHHHHHHhhhCC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGM---TDF--INPDDEPNKSISELVKGITHG-M  155 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~---~~v--~~~~~~~~~~~~~~i~~~~~~-~  155 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+ .+++.   ...  .|-.+  .+...+.+.+.... .
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~~~g   93 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTV--EDDVSRAVDFTVDKFG   93 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCC--HHHHHHHHHHHHHHhC
Confidence            4678999986 8999998888888899 999998876554433 22321   111  23222  12233323322111 2


Q ss_pred             CccEEEEccCC
Q 024295          156 GVDYCFECTGV  166 (269)
Q Consensus       156 ~~d~v~d~~g~  166 (269)
                      ++|++++++|.
T Consensus        94 ~id~li~~Ag~  104 (280)
T PLN02253         94 TLDIMVNNAGL  104 (280)
T ss_pred             CCCEEEECCCc
Confidence            69999998863

>PRK07074 short chain dehydrogenase; Provisional

Probab=95.51  E-value=0.096  Score=42.64  Aligned_cols=79  Identities=15%  Similarity=0.187  Sum_probs=49.1

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CC---Cce-eeCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FG---MTD-FINPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g---~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      ++++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+ +.   ... ..|..+  ...+...+.+... -.++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~   78 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALGDARFVPVACDLTD--AASLAAALANAAAERGPV   78 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            468999986 8999998888888898 89999988776654432 21   111 122222  1222223332211 1268


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |+++.+.|.
T Consensus        79 d~vi~~ag~   87 (257)
T PRK07074         79 DVLVANAGA   87 (257)
T ss_pred             CEEEECCCC
Confidence            999999864

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.49  E-value=0.11  Score=41.80  Aligned_cols=80  Identities=11%  Similarity=0.224  Sum_probs=50.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce-ee--CCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD-FI--NPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      .+.+++|+|+ |.+|...+..+...|+ +|+.+++++++.+.+    +..+... ++  |..+  +..+.+.+.+... -
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   82 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSD--YEEVTAAIEQLKNEL   82 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            3578999986 8999999988888899 999999887655433    2223221 12  2221  2333333333221 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|+++.++|.
T Consensus        83 ~~id~vi~~ag~   94 (239)
T PRK07666         83 GSIDILINNAGI   94 (239)
T ss_pred             CCccEEEEcCcc
Confidence            378999998864

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.48  E-value=0.097  Score=44.09  Aligned_cols=95  Identities=12%  Similarity=0.121  Sum_probs=55.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CCceeeCCCCCCCccHHHHHHhhh--CCCCccEEEEc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GMTDFINPDDEPNKSISELVKGIT--HGMGVDYCFEC  163 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~~i~~~~--~~~~~d~v~d~  163 (269)
                      +|+|+|+|++|....-.+...|. .|+.+++.+++.+.+++. |.. +....+   .... .+...+  ....+|++|-|
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~-i~~~g~---~~~~-~~~~~~~~~~~~~D~viv~   77 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLT-LVEQGQ---ASLY-AIPAETADAAEPIHRLLLA   77 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeE-EeeCCc---ceee-ccCCCCcccccccCEEEEE
Confidence            58999999999877666666788 899999887777766543 421 111111   0000 000000  11378999999


Q ss_pred             cCChh---HHHHHHHHcccCCcEEEEEc
Q 024295          164 TGVPS---LLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       164 ~g~~~---~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +=..+   .+..+...+.++ ..++.+-
T Consensus        78 vK~~~~~~al~~l~~~l~~~-t~vv~lQ  104 (305)
T PRK05708         78 CKAYDAEPAVASLAHRLAPG-AELLLLQ  104 (305)
T ss_pred             CCHHhHHHHHHHHHhhCCCC-CEEEEEe
Confidence            84432   233444455664 6666653

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.47  E-value=0.12  Score=47.46  Aligned_cols=75  Identities=12%  Similarity=0.127  Sum_probs=55.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      ++++|.|.|.+|+..++.++..|. +++++|.++++.+.+++.|...+.-...     -.+.+++ .+=..+|.++-+++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i~GD~~-----~~~~L~~-a~i~~a~~viv~~~  490 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAVLGNAA-----NEEIMQL-AHLDCARWLLLTIP  490 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEEEcCCC-----CHHHHHh-cCccccCEEEEEcC
Confidence            688999999999999999999998 9999999999999999988655543221     1222222 23237888887776


Q ss_pred             Ch
Q 024295          166 VP  167 (269)
Q Consensus       166 ~~  167 (269)
                      .+
T Consensus       491 ~~  492 (558)
T PRK10669        491 NG  492 (558)
T ss_pred             Ch
Confidence            54

>PRK03612 spermidine synthase; Provisional

Probab=95.47  E-value=0.18  Score=45.77  Aligned_cols=102  Identities=15%  Similarity=0.149  Sum_probs=62.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC-C----ceeeCCCCC--CCccHHHHHHhhhCCC
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG-M----TDFINPDDE--PNKSISELVKGITHGM  155 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g-~----~~v~~~~~~--~~~~~~~~i~~~~~~~  155 (269)
                      .+.++||++|+|. |..+..+++.-..++|++++.+++-.+.+++.. .    ...++..+-  -..|..+.+++. + .
T Consensus       296 ~~~~rVL~IG~G~-G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~-~-~  372 (521)
T PRK03612        296 ARPRRVLVLGGGD-GLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL-A-E  372 (521)
T ss_pred             CCCCeEEEEcCCc-cHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC-C-C
Confidence            4568999999875 777777777544369999999999888888721 0    001111000  003333334332 3 3


Q ss_pred             CccEEEEccCCh-----------hHHHHHHHHcccCCcEEEEEc
Q 024295          156 GVDYCFECTGVP-----------SLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       156 ~~d~v~d~~g~~-----------~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .||+|+-....+           ..++.+.+.++++ |.++.-.
T Consensus       373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pg-G~lv~~~  415 (521)
T PRK03612        373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPD-GLLVVQS  415 (521)
T ss_pred             CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCC-eEEEEec
Confidence            899887433211           1456888899996 9988754

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.47  E-value=0.075  Score=43.34  Aligned_cols=79  Identities=20%  Similarity=0.196  Sum_probs=48.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-DF--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+.++++ ++.+.+    .+.+.. ..  .|-.+  .+.....+.+... .
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~~   89 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTK--PESAEKVVKEALEEF   89 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            5789999986 8999999999988999 88888877 333322    223322 12  23222  1223223333221 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|+++.+.|.
T Consensus        90 g~id~li~~ag~  101 (258)
T PRK06935         90 GKIDILVNNAGT  101 (258)
T ss_pred             CCCCEEEECCCC
Confidence            278999998864

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.45  E-value=0.084  Score=39.77  Aligned_cols=85  Identities=14%  Similarity=0.097  Sum_probs=54.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC------ceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM------TDFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~------~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      +|.|+|+|+.|.+++..+...|. +|....++++..+.+++-+.      +..+...-....++.+.++      +.|++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~------~ad~I   73 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE------DADII   73 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT------T-SEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC------cccEE
Confidence            58899999999999999999998 99999999887777765221      1111110000133444332      67999


Q ss_pred             EEccCChhHHHHHHHHccc
Q 024295          161 FECTGVPSLLSEALETTKV  179 (269)
Q Consensus       161 ~d~~g~~~~~~~~~~~l~~  179 (269)
                      +-++... .++..++.+++
T Consensus        74 iiavPs~-~~~~~~~~l~~   91 (157)
T PF01210_consen   74 IIAVPSQ-AHREVLEQLAP   91 (157)
T ss_dssp             EE-S-GG-GHHHHHHHHTT
T ss_pred             EecccHH-HHHHHHHHHhh
Confidence            9988765 44556665554

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.44  E-value=0.12  Score=42.77  Aligned_cols=80  Identities=18%  Similarity=0.236  Sum_probs=48.3

Q ss_pred             CCCCeEEEEcC---ChhHHHHHHHHHHcCCCeEEEEcCCc---chHHHH-HhCCCceee--CCCCCCCccHHHHHHhhhC
Q 024295           83 EKGSSVAVLGL---GTVGLGAVDGARMHGAAKIIGIDKNP---WKKEKG-KAFGMTDFI--NPDDEPNKSISELVKGITH  153 (269)
Q Consensus        83 ~~~~~vlI~G~---g~~G~~a~~la~~~g~~~v~~~~~~~---~~~~~~-~~~g~~~v~--~~~~~~~~~~~~~i~~~~~  153 (269)
                      -.++++||+|+   +++|.+.++.+...|+ +|+.+.+++   ++.+.+ ++++....+  |-.+  .++..+.+.+...
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~   84 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTD--EASIDAVFETLEK   84 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCC--HHHHHHHHHHHHH
Confidence            35788999986   5899999888888999 888887653   222322 334532222  2222  2333333333221


Q ss_pred             C-CCccEEEEccC
Q 024295          154 G-MGVDYCFECTG  165 (269)
Q Consensus       154 ~-~~~d~v~d~~g  165 (269)
                      . ..+|++++++|
T Consensus        85 ~~g~iD~lv~nAG   97 (272)
T PRK08159         85 KWGKLDFVVHAIG   97 (272)
T ss_pred             hcCCCcEEEECCc
Confidence            1 27999999886

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.44  E-value=0.25  Score=41.28  Aligned_cols=95  Identities=17%  Similarity=0.231  Sum_probs=64.1

Q ss_pred             cccccchhhhHHHHHHhcCC-CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCC
Q 024295           63 SFLSCGFTTGYGAAWKEAKV-EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEP  140 (269)
Q Consensus        63 a~~~~~~~~a~~~l~~~~~~-~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~  140 (269)
                      ..+||+...... +.+..++ -.|++|.|+|. +.+|.-.+.++...|+ .|++..+..                     
T Consensus       137 ~~~PcTp~aii~-lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t---------------------  193 (301)
T PRK14194        137 VLTPCTPSGCLR-LLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRS---------------------  193 (301)
T ss_pred             CCCCCcHHHHHH-HHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCC---------------------
Confidence            345555433333 3344444 36999999997 5999999999998999 888875432                     


Q ss_pred             CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccC
Q 024295          141 NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       141 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                       .+..+.++      ..|+|+-++|.+..+...+  +++| ..++.+|..
T Consensus       194 -~~l~e~~~------~ADIVIsavg~~~~v~~~~--ik~G-aiVIDvgin  233 (301)
T PRK14194        194 -TDAKALCR------QADIVVAAVGRPRLIDADW--LKPG-AVVIDVGIN  233 (301)
T ss_pred             -CCHHHHHh------cCCEEEEecCChhcccHhh--ccCC-cEEEEeccc
Confidence             12222221      5799999999876655544  8886 888888754

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.44  E-value=0.11  Score=42.32  Aligned_cols=80  Identities=14%  Similarity=0.144  Sum_probs=48.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC-cchHHHHHhCCCce-eeCCCCCCCccHHHHHHhhhC-CCCccE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN-PWKKEKGKAFGMTD-FINPDDEPNKSISELVKGITH-GMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~-~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d~  159 (269)
                      .+++++|+|+ |.+|.+.++.+...|+ +|+.+.++ ++..+.++..+... ..|-.+  +....+.+.+... -.++|+
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKELREKGVFTIKCDVGN--RDQVKKSKEVVEKEFGRVDV   82 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHhCCCeEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            4688999986 8999999988888899 77776544 33444444434322 223322  1333333333221 127999


Q ss_pred             EEEccCC
Q 024295          160 CFECTGV  166 (269)
Q Consensus       160 v~d~~g~  166 (269)
                      ++.+.|.
T Consensus        83 li~~ag~   89 (255)
T PRK06463         83 LVNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9998864

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=95.42  E-value=0.23  Score=39.86  Aligned_cols=104  Identities=19%  Similarity=0.183  Sum_probs=64.7

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhCCC----ceeeCCCCCCCccHHHHHHhhhC
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKAFGM----TDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~~g~----~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .....++.+||.+|+|. |..+..+++..+ ..++++++.+++..+.+++.-.    ...++...   .++.+.   ...
T Consensus        46 ~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~---~~~  118 (239)
T PRK00216         46 WLGVRPGDKVLDLACGT-GDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQ---GDAEAL---PFP  118 (239)
T ss_pred             HhCCCCCCeEEEeCCCC-CHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEe---cccccC---CCC
Confidence            34455788999999987 888888888775 2399999998887777766321    11011111   111110   012


Q ss_pred             CCCccEEEEcc------CChhHHHHHHHHcccCCcEEEEEccC
Q 024295          154 GMGVDYCFECT------GVPSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       154 ~~~~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      ...+|+|+-..      .....+..+.+.++++ |.++.+...
T Consensus       119 ~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~g-G~li~~~~~  160 (239)
T PRK00216        119 DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPG-GRLVILEFS  160 (239)
T ss_pred             CCCccEEEEecccccCCCHHHHHHHHHHhccCC-cEEEEEEec
Confidence            23789886422      1233577888999996 998877543

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.41  E-value=0.12  Score=47.97  Aligned_cols=77  Identities=19%  Similarity=0.267  Sum_probs=58.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      ..+|+|.|.|.+|+..++.++..|. +++++|.++++.+.+++.|...++ |..+   .+   .+++ .+-..+|.++-+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~GDat~---~~---~L~~-agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKVFYGDATR---MD---LLES-AGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeEEEEeCCC---HH---HHHh-cCCCcCCEEEEE
Confidence            3679999999999999999999999 999999999999999998865443 2222   22   2322 333478999988


Q ss_pred             cCChhH
Q 024295          164 TGVPSL  169 (269)
Q Consensus       164 ~g~~~~  169 (269)
                      ++.+..
T Consensus       472 ~~d~~~  477 (621)
T PRK03562        472 IDDPQT  477 (621)
T ss_pred             eCCHHH
Confidence            877543

>PRK14968 putative methyltransferase; Provisional

Probab=95.41  E-value=0.069  Score=41.24  Aligned_cols=43  Identities=37%  Similarity=0.638  Sum_probs=33.7

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA  127 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~  127 (269)
                      ..+++++|.+|+|. |..+..+++. +. ++++++.+++..+.+++
T Consensus        21 ~~~~~~vLd~G~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~   63 (188)
T PRK14968         21 DKKGDRVLEVGTGS-GIVAIVAAKN-GK-KVVGVDINPYAVECAKC   63 (188)
T ss_pred             ccCCCEEEEEcccc-CHHHHHHHhh-cc-eEEEEECCHHHHHHHHH
Confidence            36788999999875 7777777776 66 99999999877776643

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.40  E-value=0.1  Score=42.82  Aligned_cols=80  Identities=16%  Similarity=0.255  Sum_probs=47.3

Q ss_pred             CCCeEEEEcC---ChhHHHHHHHHHHcCCCeEEEEcCC---cchHHHH-HhCCCceee--CCCCCCCccHHHHHHhhhCC
Q 024295           84 KGSSVAVLGL---GTVGLGAVDGARMHGAAKIIGIDKN---PWKKEKG-KAFGMTDFI--NPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        84 ~~~~vlI~G~---g~~G~~a~~la~~~g~~~v~~~~~~---~~~~~~~-~~~g~~~v~--~~~~~~~~~~~~~i~~~~~~  154 (269)
                      +++++||+|+   +++|.+.++.+...|+ +|+.+.+.   +++.+.+ ++++....+  |-.+  +++..+.+.+....
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~   81 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVAS--DEQIDALFASLGQH   81 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhcCCcceeeccCCC--HHHHHHHHHHHHHH
Confidence            4688999983   5899998888888899 88877543   3333333 334432222  3222  23333333333221


Q ss_pred             -CCccEEEEccCC
Q 024295          155 -MGVDYCFECTGV  166 (269)
Q Consensus       155 -~~~d~v~d~~g~  166 (269)
                       ..+|+++++.|.
T Consensus        82 ~g~iD~lvnnAG~   94 (260)
T PRK06997         82 WDGLDGLVHSIGF   94 (260)
T ss_pred             hCCCcEEEEcccc
Confidence             279999998863

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.39  E-value=0.12  Score=42.18  Aligned_cols=79  Identities=14%  Similarity=0.193  Sum_probs=47.1

Q ss_pred             CCCeEEEEcC---ChhHHHHHHHHHHcCCCeEEEEcCCc---chHHHH-HhC-CCc-e--eeCCCCCCCccHHHHHHhhh
Q 024295           84 KGSSVAVLGL---GTVGLGAVDGARMHGAAKIIGIDKNP---WKKEKG-KAF-GMT-D--FINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        84 ~~~~vlI~G~---g~~G~~a~~la~~~g~~~v~~~~~~~---~~~~~~-~~~-g~~-~--v~~~~~~~~~~~~~~i~~~~  152 (269)
                      .+++++|+|+   +++|.+.++.+...|+ +|+.++++.   ++.+.+ +++ +.. .  ..|-.+  ++...+.+.+..
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~   82 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTS--DEEITACFETIK   82 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCC--HHHHHHHHHHHH
Confidence            4688999985   5899998888888999 888887653   233333 223 211 1  123322  233333333332


Q ss_pred             CC-CCccEEEEccC
Q 024295          153 HG-MGVDYCFECTG  165 (269)
Q Consensus       153 ~~-~~~d~v~d~~g  165 (269)
                      .. .++|++++++|
T Consensus        83 ~~~g~ld~lv~nag   96 (257)
T PRK08594         83 EEVGVIHGVAHCIA   96 (257)
T ss_pred             HhCCCccEEEECcc
Confidence            21 27999998876

>PRK06720 hypothetical protein; Provisional

Probab=95.39  E-value=0.17  Score=38.63  Aligned_cols=39  Identities=23%  Similarity=0.155  Sum_probs=32.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKE  123 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~  123 (269)
                      +++.++|.|+ +++|...+..+...|+ +|+.++++++..+
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~   54 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQ   54 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            5788999986 7899998888888898 8999998765543

>PRK07102 short chain dehydrogenase; Provisional

Probab=95.39  E-value=0.12  Score=41.61  Aligned_cols=38  Identities=11%  Similarity=0.219  Sum_probs=32.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHH
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEK  124 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~  124 (269)
                      ++++|+|+ |.+|...++.+...|+ +|+++++++++.+.
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~   40 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLER   40 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHH
Confidence            47899986 9999999998888899 89999998876554

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=95.39  E-value=0.096  Score=44.49  Aligned_cols=99  Identities=18%  Similarity=0.170  Sum_probs=58.8

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHH---HHh-CCCceeeCCCCCCCccHHHHHHhhhCC
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEK---GKA-FGMTDFINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~---~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      .....++++||-+|+|. |..+..+++. |+..|+++|.++.....   .+. .+.+.-+....   .++.    ++...
T Consensus       117 ~l~~l~g~~VLDIGCG~-G~~~~~la~~-g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~---~d~e----~lp~~  187 (322)
T PRK15068        117 HLSPLKGRTVLDVGCGN-GYHMWRMLGA-GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLP---LGIE----QLPAL  187 (322)
T ss_pred             hhCCCCCCEEEEeccCC-cHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEe---CCHH----HCCCc
Confidence            33445689999999987 8888888776 66589999987743322   222 22110011111   1111    11112


Q ss_pred             CCccEEEEcc-----C-ChhHHHHHHHHcccCCcEEEEE
Q 024295          155 MGVDYCFECT-----G-VPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       155 ~~~d~v~d~~-----g-~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      ..||+|+-.-     . -...+..+.+.|++| |.++.-
T Consensus       188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpG-G~lvl~  225 (322)
T PRK15068        188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPG-GELVLE  225 (322)
T ss_pred             CCcCEEEECChhhccCCHHHHHHHHHHhcCCC-cEEEEE
Confidence            3799998521     1 133678899999997 998764

>PRK08226 short chain dehydrogenase; Provisional

Probab=95.37  E-value=0.15  Score=41.55  Aligned_cols=80  Identities=21%  Similarity=0.279  Sum_probs=48.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---CCCc-ee--eCCCCCCCccHHHHHHhhhC-CC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA---FGMT-DF--INPDDEPNKSISELVKGITH-GM  155 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~---~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~  155 (269)
                      +++++||+|+ |.+|...+..+...|+ +|+.++++++..+.+++   .+.. ..  .|..+  ..+..+.+.+... -.
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~~   81 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLADELCGRGHRCTAVVADVRD--PASVAAAIKRAKEKEG   81 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhCCceEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence            4688999986 8999999998888899 89999987653333322   2322 11  22222  1222222222211 12


Q ss_pred             CccEEEEccCC
Q 024295          156 GVDYCFECTGV  166 (269)
Q Consensus       156 ~~d~v~d~~g~  166 (269)
                      .+|+++.+.|.
T Consensus        82 ~id~vi~~ag~   92 (263)
T PRK08226         82 RIDILVNNAGV   92 (263)
T ss_pred             CCCEEEECCCc
Confidence            68999998873

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=95.36  E-value=0.29  Score=41.70  Aligned_cols=133  Identities=16%  Similarity=0.216  Sum_probs=79.1

Q ss_pred             eEEEEcCChhH-HHHHHHHHHcC--CCeEEEEcCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           87 SVAVLGLGTVG-LGAVDGARMHG--AAKIIGIDKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        87 ~vlI~G~g~~G-~~a~~la~~~g--~~~v~~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      +|.|+|+|.++ ..-....+..+  .+-+-+.++++++.+. ++++|....+       .++.+.+.    ...+|+|+-
T Consensus         5 rvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~-------~~~~~ll~----~~~iD~V~I   73 (342)
T COG0673           5 RVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAY-------TDLEELLA----DPDIDAVYI   73 (342)
T ss_pred             EEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCccc-------CCHHHHhc----CCCCCEEEE
Confidence            67899998555 33454555544  4345555778877654 4567765333       33433332    336999999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh---h-CCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA---C-GGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      ++....+.+.+...++.  |+-|++..|-. ...-+...+.   . +++.+.-...  +.....++.+-+++.+|.+
T Consensus        74 atp~~~H~e~~~~AL~a--GkhVl~EKPla-~t~~ea~~l~~~a~~~~~~l~v~~~--~Rf~p~~~~~k~li~~g~l  145 (342)
T COG0673          74 ATPNALHAELALAALEA--GKHVLCEKPLA-LTLEEAEELVELARKAGVKLMVGFN--RRFDPAVQALKELIDSGAL  145 (342)
T ss_pred             cCCChhhHHHHHHHHhc--CCEEEEcCCCC-CCHHHHHHHHHHHHHcCCceeeehh--hhcCHHHHHHHHHHhcCCc
Confidence            99888888888888888  68888876553 1111112222   2 2333322221  1122468888899999865

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=95.36  E-value=0.09  Score=42.40  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=28.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      +|||+|+|++|...+..+...|..++..+|.+
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D   32 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMD   32 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            48999999999999999999999999999864

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.36  E-value=0.23  Score=41.18  Aligned_cols=95  Identities=18%  Similarity=0.255  Sum_probs=62.9

Q ss_pred             ccccchhhhHHHHHHhcCC-CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCC
Q 024295           64 FLSCGFTTGYGAAWKEAKV-EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPN  141 (269)
Q Consensus        64 ~~~~~~~~a~~~l~~~~~~-~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  141 (269)
                      .+||+...... +.+..++ -.|++|+|+|. +.+|.-...++...|+ .|+....                   +.   
T Consensus       137 ~~PcTp~aii~-lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~a-tVt~~hs-------------------~t---  192 (285)
T PRK14189        137 FRPCTPYGVMK-MLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGA-TVTICHS-------------------KT---  192 (285)
T ss_pred             CcCCCHHHHHH-HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEecC-------------------CC---
Confidence            34544332222 3344443 36899999997 4569999999999998 7776532                   11   


Q ss_pred             ccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          142 KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       142 ~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      .++.+.++      ..|+++-++|.+..+..  +.+++| ..++.+|...
T Consensus       193 ~~l~~~~~------~ADIVV~avG~~~~i~~--~~ik~g-avVIDVGin~  233 (285)
T PRK14189        193 RDLAAHTR------QADIVVAAVGKRNVLTA--DMVKPG-ATVIDVGMNR  233 (285)
T ss_pred             CCHHHHhh------hCCEEEEcCCCcCccCH--HHcCCC-CEEEEccccc
Confidence            33333332      67999999998754443  789996 8888988543

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=95.35  E-value=0.25  Score=42.08  Aligned_cols=87  Identities=22%  Similarity=0.237  Sum_probs=57.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+.+|.|+|.|.+|...++.++..|. +|++.+++++.....        ....    .++.+.+.      ..|+|+-+
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~~~~~--------~~~~----~~l~ell~------~aDiVil~  205 (330)
T PRK12480        145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNKDLDF--------LTYK----DSVKEAIK------DADIISLH  205 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhHhhhh--------hhcc----CCHHHHHh------cCCEEEEe
Confidence            56789999999999999999999999 999999876432211        0011    22322221      57888887


Q ss_pred             cCChhH-----HHHHHHHcccCCcEEEEEccC
Q 024295          164 TGVPSL-----LSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       164 ~g~~~~-----~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      +.....     ....+..++++ ..+|.++..
T Consensus       206 lP~t~~t~~li~~~~l~~mk~g-avlIN~aRG  236 (330)
T PRK12480        206 VPANKESYHLFDKAMFDHVKKG-AILVNAARG  236 (330)
T ss_pred             CCCcHHHHHHHhHHHHhcCCCC-cEEEEcCCc
Confidence            764321     23455677775 777777644

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=95.33  E-value=0.1  Score=44.82  Aligned_cols=76  Identities=17%  Similarity=0.150  Sum_probs=47.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCC----Ccee-eCCCCCCCccHHHHHHhhhCCCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFG----MTDF-INPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g----~~~v-~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      ++.+|||+|+ |.+|..+++.+...|. +|++++++++..... +.++    ...+ .|-.+   .   +.+.+...+.+
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~---~---~~~~~~~~~~~   75 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRD---A---AKLRKAIAEFK   75 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCccchhHHHHHhhcCCceEEEccCCC---H---HHHHHHHhhcC
Confidence            4678999986 9999999999998999 899998776543322 2121    1111 12221   1   22333322336


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|+|+++++.
T Consensus        76 ~d~vih~A~~   85 (349)
T TIGR02622        76 PEIVFHLAAQ   85 (349)
T ss_pred             CCEEEECCcc
Confidence            8999998863

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK07411 hypothetical protein; Validated

Probab=95.33  E-value=0.069  Score=46.61  Aligned_cols=35  Identities=26%  Similarity=0.264  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      +..+|||+|+|++|..+++.+...|..+++.+|.+
T Consensus        37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D   71 (390)
T PRK07411         37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD   71 (390)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            35789999999999999999999999999999854

>PRK08223 hypothetical protein; Validated

Probab=95.33  E-value=0.1  Score=43.25  Aligned_cols=35  Identities=31%  Similarity=0.275  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      +..+|+|+|+|++|..+++.+...|..++..+|.+
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            46789999999999999999999999899888754

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=95.31  E-value=0.086  Score=38.13  Aligned_cols=78  Identities=19%  Similarity=0.351  Sum_probs=48.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEc-CCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGID-KNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~-~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      -+|-|+|+|.+|......++..|. .|..+. ++.++.+.+.. ++...+.+..            +..  ...|++|-+
T Consensus        11 l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~srs~~sa~~a~~~~~~~~~~~~~------------~~~--~~aDlv~ia   75 (127)
T PF10727_consen   11 LKIGIIGAGRVGTALARALARAGH-EVVGVYSRSPASAERAAAFIGAGAILDLE------------EIL--RDADLVFIA   75 (127)
T ss_dssp             -EEEEECTSCCCCHHHHHHHHTTS-EEEEESSCHH-HHHHHHC--TT-----TT------------GGG--CC-SEEEE-
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCcccccccccccccccccccc------------ccc--ccCCEEEEE
Confidence            578899999999999999999999 887774 55556666554 3433333221            111  278999999


Q ss_pred             cCChhHHHHHHHHccc
Q 024295          164 TGVPSLLSEALETTKV  179 (269)
Q Consensus       164 ~g~~~~~~~~~~~l~~  179 (269)
                      +... .+....+.+..
T Consensus        76 vpDd-aI~~va~~La~   90 (127)
T PF10727_consen   76 VPDD-AIAEVAEQLAQ   90 (127)
T ss_dssp             S-CC-HHHHHHHHHHC
T ss_pred             echH-HHHHHHHHHHH
Confidence            9776 66666666654

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=95.31  E-value=0.045  Score=41.99  Aligned_cols=110  Identities=20%  Similarity=0.246  Sum_probs=55.2

Q ss_pred             cccchhhhHHHHHH-----hcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---C-C----C-
Q 024295           65 LSCGFTTGYGAAWK-----EAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA---F-G----M-  130 (269)
Q Consensus        65 ~~~~~~~a~~~l~~-----~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~---~-g----~-  130 (269)
                      ++.+...+.+....     .....++.+||-+|+| +|+..+.+++..+..+|+.+|.++ -.+.++.   . +    . 
T Consensus        21 W~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG-~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~   98 (173)
T PF10294_consen   21 WPAALVLARYLLSHSESEFNPELFRGKRVLELGAG-TGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGR   98 (173)
T ss_dssp             --HHHHHHHHHHH-------GGGTTTSEEEETT-T-TSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-------
T ss_pred             echHHHHHHHHHHhcccccchhhcCCceEEEECCc-cchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhcccccccc
Confidence            34445555554332     2345678999999988 587777777776666999999876 5555433   1 1    1 


Q ss_pred             --ceeeCCCCCCCccHHHHHHhhhCCCCccEEE--Ecc----CChhHHHHHHHHcccCCcEE
Q 024295          131 --TDFINPDDEPNKSISELVKGITHGMGVDYCF--ECT----GVPSLLSEALETTKVGKGKV  184 (269)
Q Consensus       131 --~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~--d~~----g~~~~~~~~~~~l~~~~G~~  184 (269)
                        ...+++.+   + ..   .+..+...||+|+  |++    -.++.+..+..+++++ +.+
T Consensus        99 v~v~~L~Wg~---~-~~---~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~-~~v  152 (173)
T PF10294_consen   99 VSVRPLDWGD---E-LD---SDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPN-GKV  152 (173)
T ss_dssp             -EEEE--TTS-----HH---HHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT--TTE
T ss_pred             ccCcEEEecC---c-cc---ccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCC-CEE
Confidence              11233332   1 11   1222334789886  333    2233455666677775 663

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.31  E-value=0.079  Score=44.20  Aligned_cols=37  Identities=19%  Similarity=0.288  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW  120 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~  120 (269)
                      +++++||+|+|+.+.+++..+...|+++++++.|+++
T Consensus       123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            5679999999888988777777789989999999854

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.29  E-value=0.15  Score=42.46  Aligned_cols=92  Identities=25%  Similarity=0.287  Sum_probs=58.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcc---hHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW---KKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~---~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      .|++||-+|+|. |.....+++. |++.|++++.+..   +...+++ +|.+..+..-    +...+.+..   ...||+
T Consensus       115 ~gk~VLDIGC~n-GY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l----plgvE~Lp~---~~~FDt  185 (315)
T PF08003_consen  115 KGKRVLDIGCNN-GYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL----PLGVEDLPN---LGAFDT  185 (315)
T ss_pred             CCCEEEEecCCC-cHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEc----Ccchhhccc---cCCcCE
Confidence            689999999987 8888888776 7779999998763   3334454 3432211111    122333333   237999


Q ss_pred             EEEccCC-------hhHHHHHHHHcccCCcEEEE
Q 024295          160 CFECTGV-------PSLLSEALETTKVGKGKVIV  186 (269)
Q Consensus       160 v~d~~g~-------~~~~~~~~~~l~~~~G~~v~  186 (269)
                      ||- .|.       -.++..+-+.+++| |.+++
T Consensus       186 VF~-MGVLYHrr~Pl~~L~~Lk~~L~~g-GeLvL  217 (315)
T PF08003_consen  186 VFS-MGVLYHRRSPLDHLKQLKDSLRPG-GELVL  217 (315)
T ss_pred             EEE-eeehhccCCHHHHHHHHHHhhCCC-CEEEE
Confidence            984 332       12567777889996 98874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=95.29  E-value=0.12  Score=41.62  Aligned_cols=80  Identities=21%  Similarity=0.189  Sum_probs=49.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCc-ee--eCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMT-DF--INPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      +++++||+|+ |.+|...+..+...|+ .|+..+++.++.+.+. +++.. .+  .|-.+  ...+.+.+.+... -.++
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~i   81 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAELGERVKIFPANLSD--RDEVKALGQKAEADLEGV   81 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            4678999986 9999999888888898 8888888776665543 33321 12  22222  1222222222211 1279


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |.++.+.|.
T Consensus        82 d~vi~~ag~   90 (245)
T PRK12936         82 DILVNNAGI   90 (245)
T ss_pred             CEEEECCCC
Confidence            999999874

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.28  E-value=0.063  Score=35.26  Aligned_cols=32  Identities=22%  Similarity=0.411  Sum_probs=28.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      +|+|+|+|.+|.-++..++..|. +|+.+.+++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~   32 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSD   32 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccc
Confidence            58899999999999999999998 999998764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK06436 glycerate dehydrogenase; Provisional

Probab=95.27  E-value=0.18  Score=42.46  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      .|++|.|+|.|.+|...+++++..|. +|++.+++.
T Consensus       121 ~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~~  155 (303)
T PRK06436        121 YNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRSY  155 (303)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            57999999999999999999999999 999999763

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.27  E-value=0.14  Score=41.19  Aligned_cols=70  Identities=23%  Similarity=0.310  Sum_probs=48.4

Q ss_pred             EEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           88 VAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW--KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        88 vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~--~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      |+|+|+ |.+|...++.+...+. +|.++.|+..  ..+.++..|+..+. -+-   .+ .+.+.+...  |+|.||-++
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l~R~~~~~~~~~l~~~g~~vv~-~d~---~~-~~~l~~al~--g~d~v~~~~   72 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF-SVRALVRDPSSDRAQQLQALGAEVVE-ADY---DD-PESLVAALK--GVDAVFSVT   72 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG-CEEEEESSSHHHHHHHHHHTTTEEEE-S-T---T--HHHHHHHHT--TCSEEEEES
T ss_pred             CEEECCccHHHHHHHHHHHhCCC-CcEEEEeccchhhhhhhhcccceEee-ccc---CC-HHHHHHHHc--CCceEEeec
Confidence            689996 9999999999999888 8999998763  34556778876442 221   11 222333222  899999988


Q ss_pred             C
Q 024295          165 G  165 (269)
Q Consensus       165 g  165 (269)
                      +
T Consensus        73 ~   73 (233)
T PF05368_consen   73 P   73 (233)
T ss_dssp             S
T ss_pred             C
Confidence            7

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.27  E-value=0.17  Score=46.82  Aligned_cols=92  Identities=8%  Similarity=0.058  Sum_probs=64.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      .+|+|.|.|.+|+..++.++..|. +++++|.++++.+.+++.|...++ |..+   .+    +.+..+=...|.++-++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~GDat~---~~----~L~~agi~~A~~vv~~~  472 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYKVYYGDATQ---LE----LLRAAGAEKAEAIVITC  472 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCeEEEeeCCC---HH----HHHhcCCccCCEEEEEe
Confidence            579999999999999999999999 999999999999999998865444 2222   22    22323334789999998


Q ss_pred             CChhHHHHH---HHHcccCCcEEEE
Q 024295          165 GVPSLLSEA---LETTKVGKGKVIV  186 (269)
Q Consensus       165 g~~~~~~~~---~~~l~~~~G~~v~  186 (269)
                      +.+..-..+   .+...|. -+++.
T Consensus       473 ~d~~~n~~i~~~~r~~~p~-~~Iia  496 (601)
T PRK03659        473 NEPEDTMKIVELCQQHFPH-LHILA  496 (601)
T ss_pred             CCHHHHHHHHHHHHHHCCC-CeEEE
Confidence            875442233   3444553 55543

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.27  E-value=0.34  Score=39.16  Aligned_cols=104  Identities=16%  Similarity=0.100  Sum_probs=58.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC-cchH----HHHHhCCCc-ee--eCCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN-PWKK----EKGKAFGMT-DF--INPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~-~~~~----~~~~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-  153 (269)
                      .++++||+|+ |.+|.+.+.-+...|+ +++.+.++ .++.    +.+++.+.. ..  .|..+  +....+.+.++.. 
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   81 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKEGS-LVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVST--REGCETLAKATIDR   81 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCC--HHHHHHHHHHHHHH
Confidence            3578999986 8999998888888899 77666543 2222    222334332 12  23222  1222222222211 


Q ss_pred             CCCccEEEEccCC----------hh---------------HHHHHHHHcccCCcEEEEEccCC
Q 024295          154 GMGVDYCFECTGV----------PS---------------LLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       154 ~~~~d~v~d~~g~----------~~---------------~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      -.++|++|.++|.          ..               ..+.+.+.++.. |+++.++...
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~sS~~  143 (252)
T PRK06077         82 YGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREG-GAIVNIASVA  143 (252)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcC-cEEEEEcchh
Confidence            1278999999873          00               123344455664 8999887654

>PLN00016 RNA-binding protein; Provisional

Probab=95.26  E-value=0.26  Score=42.78  Aligned_cols=96  Identities=14%  Similarity=0.160  Sum_probs=59.3

Q ss_pred             CCeEEEE----cC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-----------HhCCCceeeCCCCCCCccHHHHH
Q 024295           85 GSSVAVL----GL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-----------KAFGMTDFINPDDEPNKSISELV  148 (269)
Q Consensus        85 ~~~vlI~----G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-----------~~~g~~~v~~~~~~~~~~~~~~i  148 (269)
                      ..+|||+    |+ |-+|..++..+...|. +|++++++++....+           ...+...+.       .+..+ +
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~-------~D~~d-~  122 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVW-------GDPAD-V  122 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhccCchhhhhHhhhcCceEEE-------ecHHH-H
Confidence            4689999    96 9999999988888898 999999876543221           122333332       22222 2


Q ss_pred             HhhhCCCCccEEEEccCChh-HHHHHHHHcccC-CcEEEEEcc
Q 024295          149 KGITHGMGVDYCFECTGVPS-LLSEALETTKVG-KGKVIVIGV  189 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~g~~~-~~~~~~~~l~~~-~G~~v~~g~  189 (269)
                      .+.....++|+|+++.+... ....+++.++.. -.++|.++.
T Consensus       123 ~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS  165 (378)
T PLN00016        123 KSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSS  165 (378)
T ss_pred             HhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            22222348999999876431 244556665542 136777664

>PRK07985 oxidoreductase; Provisional

Probab=95.25  E-value=0.4  Score=40.09  Aligned_cols=80  Identities=19%  Similarity=0.063  Sum_probs=47.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCc--chHHHH----HhCCCce---eeCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNP--WKKEKG----KAFGMTD---FINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~--~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.+.++.  ++.+.+    ++.+...   ..|-.+  .+...+.+.+...
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~  124 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSD--EKFARSLVHEAHK  124 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCC--HHHHHHHHHHHHH
Confidence            5678999986 8999999988888899 888876543  223222    2233221   123222  1223333333221


Q ss_pred             -CCCccEEEEccCC
Q 024295          154 -GMGVDYCFECTGV  166 (269)
Q Consensus       154 -~~~~d~v~d~~g~  166 (269)
                       -.++|+++.+.|.
T Consensus       125 ~~g~id~lv~~Ag~  138 (294)
T PRK07985        125 ALGGLDIMALVAGK  138 (294)
T ss_pred             HhCCCCEEEECCCC
Confidence             1278999988763

>PRK12747 short chain dehydrogenase; Provisional

Probab=95.25  E-value=0.38  Score=38.96  Aligned_cols=38  Identities=18%  Similarity=0.117  Sum_probs=29.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEc-CCcchH
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGID-KNPWKK  122 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~-~~~~~~  122 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+... +++++.
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~   42 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEA   42 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHH
Confidence            4688999986 8999999999988999 777764 444433

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.24  E-value=0.13  Score=41.88  Aligned_cols=100  Identities=15%  Similarity=0.096  Sum_probs=58.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC--CCcee-eCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF--GMTDF-INPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~--g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      +..+|||+|+ |.+|..+++.+...|+ +|+++.|++++.......  ++..+ .|..+   .  .+.+.+... .++|+
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d---~--~~~l~~~~~-~~~d~   88 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAKTSLPQDPSLQIVRADVTE---G--SDKLVEAIG-DDSDA   88 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHHHhcccCCceEEEEeeCCC---C--HHHHHHHhh-cCCCE
Confidence            3578999996 9999999888888898 899998887665433221  22222 22221   1  122222221 26899


Q ss_pred             EEEccCChh-------------HHHHHHHHcccC-CcEEEEEccC
Q 024295          160 CFECTGVPS-------------LLSEALETTKVG-KGKVIVIGVG  190 (269)
Q Consensus       160 v~d~~g~~~-------------~~~~~~~~l~~~-~G~~v~~g~~  190 (269)
                      +|.+.|...             ....+++.+... .++++.++..
T Consensus        89 vi~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~  133 (251)
T PLN00141         89 VICATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI  133 (251)
T ss_pred             EEECCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence            998876421             123444444432 2578887654

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=95.24  E-value=0.11  Score=42.58  Aligned_cols=80  Identities=21%  Similarity=0.296  Sum_probs=49.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-ee--eCCCCCCCccHHHHHHhhhCC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-DF--INPDDEPNKSISELVKGITHG-  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~~-  154 (269)
                      +++++||+|+ +.+|.+.+..+...|+ +|+.+++++++.+.+    ++.+.. ..  .|-.+  .....+.+.+.... 
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   85 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTD--EDGVQAMVSQIEKEV   85 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHhC
Confidence            5688999986 8999998888888899 888888887665443    233432 11  23222  12222223222111 


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|.++.+.|.
T Consensus        86 ~~id~li~~ag~   97 (265)
T PRK07097         86 GVIDILVNNAGI   97 (265)
T ss_pred             CCCCEEEECCCC
Confidence            268999998874

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.23  E-value=0.21  Score=39.20  Aligned_cols=35  Identities=20%  Similarity=0.416  Sum_probs=30.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      .+.+|+|+|+|++|...++.+...|..+++.+|.+
T Consensus        18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d   52 (198)
T cd01485          18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR   52 (198)
T ss_pred             hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            35789999999999999999999999889888754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=95.22  E-value=0.24  Score=41.54  Aligned_cols=59  Identities=24%  Similarity=0.262  Sum_probs=47.7

Q ss_pred             HhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcC---CcchHHHHHhCCCceeeCCC
Q 024295           78 KEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDK---NPWKKEKGKAFGMTDFINPD  137 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~---~~~~~~~~~~~g~~~v~~~~  137 (269)
                      ..+.+.|+++.||=.. |++|....-+++..|+ +++++-.   +.||...++.+|+..+....
T Consensus        96 ~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gy-k~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~  158 (362)
T KOG1252|consen   96 KKGLITPGKSTLIEPTSGNTGIGLAYMAALRGY-KCIITMPEKMSKEKRILLRALGAEIILTPP  158 (362)
T ss_pred             HcCCccCCceEEEecCCCchHHHHHHHHHHcCc-eEEEEechhhhHHHHHHHHHcCCEEEecCh
Confidence            4577899999999985 9999999999999999 7777753   45888888999987655443

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=95.22  E-value=0.12  Score=41.91  Aligned_cols=78  Identities=17%  Similarity=0.233  Sum_probs=49.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-ee--eCCCCCCCccHHHHHHhhhC-CCC
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DF--INPDDEPNKSISELVKGITH-GMG  156 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~  156 (269)
                      +++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+    .+.. ..  .|..+  ..++.+.+.+... ..+
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~   78 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTK--EDEIADMIAAAAAEFGG   78 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHhcCC
Confidence            57999986 9999999988888899 99999998776655433    2221 11  23322  1233333333211 136


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|+++.+.+.
T Consensus        79 ~d~vi~~a~~   88 (255)
T TIGR01963        79 LDILVNNAGI   88 (255)
T ss_pred             CCEEEECCCC
Confidence            8999987753

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK07791 short chain dehydrogenase; Provisional

Probab=95.22  E-value=0.21  Score=41.50  Aligned_cols=36  Identities=25%  Similarity=0.301  Sum_probs=29.8

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           83 EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        83 ~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      .+++++||+|+ +++|.+.++.+...|+ +|+.++++.
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~   40 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGV   40 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCc
Confidence            35789999986 8999999888888899 888887654

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=95.21  E-value=0.13  Score=41.88  Aligned_cols=80  Identities=16%  Similarity=0.096  Sum_probs=50.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-DF--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      .++++||+|+ |.+|...+..+...|+ +++.+++++++.+.+    ++.+.+ ++  .|..+  .+...+.+.+... -
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~~   86 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS--EQELSALADFALSKL   86 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4789999986 8999999988888899 888888877655433    223322 12  23322  1223333332211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|+++.+.|.
T Consensus        87 ~~~d~li~~ag~   98 (255)
T PRK06113         87 GKVDILVNNAGG   98 (255)
T ss_pred             CCCCEEEECCCC
Confidence            278999998863

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.21  E-value=0.12  Score=46.13  Aligned_cols=70  Identities=29%  Similarity=0.335  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc-chH----HHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP-WKK----EKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~-~~~----~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      .+++|+|+|+|.+|+.++..+...|+ +|++++++. +..    +.+++.|...+....    .+   ...    + ++|
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~----~~---~~~----~-~~d   70 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKEALEELGELGIELVLGEY----PE---EFL----E-GVD   70 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCEEEeCCc----ch---hHh----h-cCC
Confidence            46889999998899999999999999 999999764 222    233445655333222    11   111    2 689


Q ss_pred             EEEEccCC
Q 024295          159 YCFECTGV  166 (269)
Q Consensus       159 ~v~d~~g~  166 (269)
                      +|+.++|.
T Consensus        71 ~vv~~~g~   78 (450)
T PRK14106         71 LVVVSPGV   78 (450)
T ss_pred             EEEECCCC
Confidence            99998875

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=95.19  E-value=0.62  Score=39.09  Aligned_cols=43  Identities=21%  Similarity=0.302  Sum_probs=36.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM  130 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~  130 (269)
                      +|.|+|.|.+|...+..+...|. +|++.++++++.+.+++.|.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~g~   44 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKEDRT   44 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCC
Confidence            57899999999988777777888 89999999998888877653

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.19  E-value=0.3  Score=40.71  Aligned_cols=40  Identities=20%  Similarity=0.260  Sum_probs=34.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK  126 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~  126 (269)
                      ++|.|+|+|.+|...++.+...|. +|++.++++++.+.+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~   41 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQ   41 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Confidence            468999999999998888888898 9999999988877654

>PRK05650 short chain dehydrogenase; Provisional

Probab=95.17  E-value=0.13  Score=42.19  Aligned_cols=77  Identities=18%  Similarity=0.197  Sum_probs=47.4

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce-ee--CCCCCCCccHHHHHHhhhC-CCCc
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD-FI--NPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      ++||+|+ |.+|...+..+...|+ +|+.++++.++.+.+    +..+.+. .+  |..+  ..++.+.+.+... ..++
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~i~~~~~~i   78 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRD--YSQLTALAQACEEKWGGI   78 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            6899986 8999998888888899 899999887665533    2233222 12  2221  1222222222211 1279


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus        79 d~lI~~ag~   87 (270)
T PRK05650         79 DVIVNNAGV   87 (270)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK10206 putative oxidoreductase; Provisional

Probab=95.16  E-value=0.18  Score=43.31  Aligned_cols=132  Identities=14%  Similarity=0.153  Sum_probs=73.8

Q ss_pred             eEEEEcCChhHH-HHHH-HHHH-cCCCeEEEE-cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           87 SVAVLGLGTVGL-GAVD-GARM-HGAAKIIGI-DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        87 ~vlI~G~g~~G~-~a~~-la~~-~g~~~v~~~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      ++.|+|+|.++. .-+. +... .++ +++++ ++++++.+.+++++...++       .++.+.+    ....+|+|+-
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~-~l~av~d~~~~~~~~~~~~~~~~~~-------~~~~ell----~~~~iD~V~I   70 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSW-HVAHIFRRHAKPEEQAPIYSHIHFT-------SDLDEVL----NDPDVKLVVV   70 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCE-EEEEEEcCChhHHHHHHhcCCCccc-------CCHHHHh----cCCCCCEEEE
Confidence            578999987553 2222 2232 356 66654 5555555445556522222       3343333    2348999999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      ++....+.+.+..++..  |+-|++..+... ..-....+.    .+++.+.......  ....+..+.+++++|.+
T Consensus        71 ~tp~~~H~~~~~~al~a--GkhVl~EKPla~-~~~ea~~l~~~a~~~~~~l~v~~~~R--~~p~~~~~k~li~~g~i  142 (344)
T PRK10206         71 CTHADSHFEYAKRALEA--GKNVLVEKPFTP-TLAEAKELFALAKSKGLTVTPYQNRR--FDSCFLTAKKAIESGKL  142 (344)
T ss_pred             eCCchHHHHHHHHHHHc--CCcEEEecCCcC-CHHHHHHHHHHHHHhCCEEEEEEeee--ECHHHHHHHHHHHcCCC
Confidence            99888788888888887  677777655431 111111121    2344443322111  22457788889998875

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=95.16  E-value=0.38  Score=39.92  Aligned_cols=73  Identities=22%  Similarity=0.205  Sum_probs=53.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcch-HHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK-KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~-~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      +|.++|.|.+|.-..+=+...|. .+.+.++++++ .+.++..|+...-        ...+.+.      ..|+||-++.
T Consensus         2 kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ka~~~~~~~Ga~~a~--------s~~eaa~------~aDvVitmv~   66 (286)
T COG2084           2 KIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPEKAAELLAAAGATVAA--------SPAEAAA------EADVVITMLP   66 (286)
T ss_pred             eEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChhhhhHHHHHcCCcccC--------CHHHHHH------hCCEEEEecC
Confidence            57889999999998888888899 99999999999 8888888865332        1122221      5677777776


Q ss_pred             ChhHHHHHH
Q 024295          166 VPSLLSEAL  174 (269)
Q Consensus       166 ~~~~~~~~~  174 (269)
                      .++.....+
T Consensus        67 ~~~~V~~V~   75 (286)
T COG2084          67 DDAAVRAVL   75 (286)
T ss_pred             CHHHHHHHH
Confidence            655544444

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.16  E-value=0.16  Score=44.00  Aligned_cols=35  Identities=29%  Similarity=0.434  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      .+.+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46789999999999999999999999899999865

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=95.15  E-value=0.055  Score=43.17  Aligned_cols=102  Identities=19%  Similarity=0.189  Sum_probs=61.7

Q ss_pred             HhcCCCCCCeEE-EEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc-eeeCCCCCCCccHHHHHHhhh-CC
Q 024295           78 KEAKVEKGSSVA-VLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT-DFINPDDEPNKSISELVKGIT-HG  154 (269)
Q Consensus        78 ~~~~~~~~~~vl-I~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~-~~  154 (269)
                      ..+...++.+++ -+|+|+ |+++.-++-+  +++|+++|.+++.++.+++.... .......+++++    +-++. +.
T Consensus        26 ~ia~~~~~h~~a~DvG~G~-Gqa~~~iae~--~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~----~v~L~g~e   98 (261)
T KOG3010|consen   26 KIASRTEGHRLAWDVGTGN-GQAARGIAEH--YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDE----MVDLLGGE   98 (261)
T ss_pred             HHHhhCCCcceEEEeccCC-CcchHHHHHh--hhhheeecCCHHHHHHhhcCCCcccccCCccccccc----cccccCCC
Confidence            456666777643 338876 7777666666  56899999999999999875432 111111111111    22222 23


Q ss_pred             CCccEEEEcc-----CChhHHHHHHHHcccCCcEEEEE
Q 024295          155 MGVDYCFECT-----GVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       155 ~~~d~v~d~~-----g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      ..+|+|.-+-     ..+...+.+.+.|++. |.++.+
T Consensus        99 ~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~-Gg~iav  135 (261)
T KOG3010|consen   99 ESVDLITAAQAVHWFDLERFYKEAYRVLRKD-GGLIAV  135 (261)
T ss_pred             cceeeehhhhhHHhhchHHHHHHHHHHcCCC-CCEEEE
Confidence            4788886432     2345678889999996 744443

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.14  E-value=0.36  Score=40.28  Aligned_cols=40  Identities=28%  Similarity=0.289  Sum_probs=34.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK  126 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~  126 (269)
                      .+|.|+|+|.+|...++.+...|. +|+..++++++.+.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~   43 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAK   43 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHH
Confidence            579999999999998888888898 9999999887766553

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=95.13  E-value=0.19  Score=42.68  Aligned_cols=100  Identities=17%  Similarity=0.283  Sum_probs=60.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC----CCeEEEEcC--CcchHHHHHhCCC--------------ceeeCCCC---CCCcc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHG----AAKIIGIDK--NPWKKEKGKAFGM--------------TDFINPDD---EPNKS  143 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g----~~~v~~~~~--~~~~~~~~~~~g~--------------~~v~~~~~---~~~~~  143 (269)
                      +|.|+|.|.+|....+.+...+    . .|+++..  +.+.+.++.++.-              ..+++.+.   ....+
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~-~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~   79 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGI-EVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT   79 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCe-EEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence            4789999999999999877653    4 6666642  2233344433221              01111110   00011


Q ss_pred             HHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          144 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       144 ~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      .. ++ .| +..++|+||+|+|...+.+.+...+..| ++.|.++.+.
T Consensus        80 p~-~~-~w-~~~gvDiVie~tG~~~s~e~a~~~l~aG-a~~V~~SaP~  123 (325)
T TIGR01532        80 PE-AL-PW-RALGVDLVLDCTGVYGNREQGERHIRAG-AKRVLFSHPG  123 (325)
T ss_pred             hh-hc-cc-cccCCCEEEEccchhccHHHHHHHHHcC-CeEEEecCCC
Confidence            11 11 12 1248999999999887778888899986 8888888653

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.13  E-value=0.11  Score=42.81  Aligned_cols=78  Identities=22%  Similarity=0.232  Sum_probs=49.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchH----HHHHhCC-C-ceeeCCCCCCCcc---HHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKK----EKGKAFG-M-TDFINPDDEPNKS---ISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~----~~~~~~g-~-~~v~~~~~~~~~~---~~~~i~~~~~  153 (269)
                      .|+.|||+|+ +++|.+.++=....|+ +++..|.+++..    +..++.| + ....|-.+  .++   ..+++++-. 
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~--~eei~~~a~~Vk~e~-  112 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISD--REEIYRLAKKVKKEV-  112 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCC--HHHHHHHHHHHHHhc-
Confidence            5899999986 6899876655555688 888888776433    3344444 2 23444433  133   333343333 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      | .+|++++.+|-
T Consensus       113 G-~V~ILVNNAGI  124 (300)
T KOG1201|consen  113 G-DVDILVNNAGI  124 (300)
T ss_pred             C-CceEEEecccc
Confidence            3 89999998875

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=95.12  E-value=0.48  Score=39.47  Aligned_cols=60  Identities=17%  Similarity=0.243  Sum_probs=46.2

Q ss_pred             HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc---CCcchHHHHHhCCCceeeCCC
Q 024295           77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID---KNPWKKEKGKAFGMTDFINPD  137 (269)
Q Consensus        77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~---~~~~~~~~~~~~g~~~v~~~~  137 (269)
                      ...+.+++|.+|+---+|++|.+.+.+++..|+ +++.+-   .+++|.+.++.+|+.-+....
T Consensus        54 e~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy-~~iivmP~~~S~er~~~l~a~GAevi~t~~  116 (300)
T COG0031          54 EKRGLLKPGGTIVEATSGNTGIALAMVAAAKGY-RLIIVMPETMSQERRKLLRALGAEVILTPG  116 (300)
T ss_pred             HHcCCCCCCCEEEEcCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence            356779999965554469999999999999999 555443   356888899999988766655

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=95.12  E-value=0.13  Score=48.41  Aligned_cols=80  Identities=21%  Similarity=0.238  Sum_probs=51.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----CCCc--e--eeCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-----FGMT--D--FINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-----~g~~--~--v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|++++++.++.+.+.+     .+..  .  ..|-.+  ...+.+.+.+...
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd--~~~v~~a~~~i~~  489 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTD--EQAVKAAFADVAL  489 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCC--HHHHHHHHHHHHH
Confidence            4789999986 9999999988888899 99999988766554321     2221  1  122222  1233333333211


Q ss_pred             -CCCccEEEEccCC
Q 024295          154 -GMGVDYCFECTGV  166 (269)
Q Consensus       154 -~~~~d~v~d~~g~  166 (269)
                       -.++|++++++|.
T Consensus       490 ~~g~iDilV~nAG~  503 (676)
T TIGR02632       490 AYGGVDIVVNNAGI  503 (676)
T ss_pred             hcCCCcEEEECCCC
Confidence             1279999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		3e-39
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		3e-39
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		4e-36
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		4e-36
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		2e-35
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		5e-35
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		7e-35
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		7e-35
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		1e-34
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		1e-34
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		1e-34
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		1e-34
1qlh_A	374	Horse Liver Alcohol Dehydrogenase Complexed To Nad		1e-33
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-33
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		2e-33
1ju9_A	374	Horse Liver Alcohol Dehydrogenase Val292ser Mutant		2e-33
1a71_A	374	Ternary Complex Of An Active Site Double Mutant Of		2e-33
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-33
1n8k_A	374	Horse Liver Alcohol Dehydrogenase Val292thr Mutant		2e-33
1axg_A	374	Crystal Structure Of The Val203->ala Mutant Of Live		2e-33
1mgo_A	374	Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L		2e-33
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		2e-33
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		2e-33
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		3e-33
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		2e-31
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		2e-31
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		3e-31
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		1e-30
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		1e-30
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		8e-30
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		1e-27
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		2e-11
3fpl_A	351	Chimera Of Alcohol Dehydrogenase By Exchange Of The		8e-07
1vj0_A	380	Crystal Structure Of Alcohol Dehydrogenase (Tm0436)		2e-06
1jqb_A	351	Alcohol Dehydrogenase From Clostridium Beijerinckii		2e-06
2b83_A	351	A Single Amino Acid Substitution In The Clostridium		3e-06
1ped_A	351	Bacterial Secondary Alcohol Dehydrogenase (Apo-Form		3e-06
1ykf_A	352	Nadp-Dependent Alcohol Dehydrogenase From Thermoana		2e-05
3ftn_A	352	Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO		5e-05
3fsr_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		5e-05
2nvb_A	352	Contribution Of Pro275 To The Thermostability Of Th		2e-04

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score =  158 bits (400), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/272 (35%), Positives = 139/272 (51%), Gaps = 12/272 (4%)
Query: 2   TNLCLKYPIALN-GLML-DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDP 59
           TNLC K   A   G+M+ D  SR SV G+ +YH    ST+S+Y V+    V K+DP+   
Sbjct: 109 TNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPL 168
Query: 60  SDASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNP 119
                L CG  TG GA W  AKVE                     +  GA++IIGID + 
Sbjct: 169 DKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDS 228
Query: 120 WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXX 179
            K E  K FG+ +F+NP D  +K I E++  +T G GVDY FEC G  S++  ALE    
Sbjct: 229 KKYETAKKFGVNEFVNPKDH-DKPIQEVIVDLTDG-GVDYSFECIGNVSVMRAALECCHK 286
Query: 180 XXXXXXXXXXXXD----AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF 235
                            +  P  ++     GR  KGT FGG K+++ +P L++K  NKE 
Sbjct: 287 GWGTSVIVGVAASGQEISTRPFQLVT----GRVWKGTAFGGFKSRTQVPWLVEKYMNKEI 342
Query: 236 KLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
           K+ + +TH++ L EI+KA  LL +  C++ ++
Sbjct: 343 KVDEYITHNLTLGEINKAFDLLHEGTCLRCVL 374

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/272 (35%), Positives = 139/272 (51%), Gaps = 12/272 (4%)
Query: 2   TNLCLKYPIALN-GLML-DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDP 59
           TNLC K   A   G+M+ D  SR S+ G+ +YH    ST+S+Y V+    V K+DP    
Sbjct: 127 TNLCGKVRAATGVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPL 186
Query: 60  SDASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNP 119
                L CG  TG GA W  AKVE                     +  GA++IIGID + 
Sbjct: 187 EKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDS 246
Query: 120 WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXX 179
            K ++ K FG+T+FINP  E  + I +++  +T G GVDY FEC G  S++  ALE    
Sbjct: 247 KKFDRAKNFGVTEFINPK-EHEQPIQQVIVDLTDG-GVDYSFECIGNVSVMRSALECCHK 304
Query: 180 XXXXXXXXXXXXDAM----VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF 235
                               P  ++     GR  KGT FGG K++S +P+L+DK   KE 
Sbjct: 305 GWGTSVIVGVAASGQEISTRPFQLVT----GRVWKGTAFGGFKSRSQVPSLVDKYLKKEI 360
Query: 236 KLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
           K+ + +TH++ L +I+KA  L+   DC++V++
Sbjct: 361 KVDEYITHNMTLADINKAFDLMHDGDCLRVVL 392

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  148 bits (373), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/274 (33%), Positives = 137/274 (50%), Gaps = 11/274 (4%)
Query: 1   MTNLC-----LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDP 55
           +TNLC      KYP     LM D TSR + +G+ +YH    S++S+Y V+    + +VD 
Sbjct: 107 LTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDD 166
Query: 56  SIDPSDASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGI 115
             +      + CGF++GYGAA   AKV                      ++ GA++II I
Sbjct: 167 EANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAI 226
Query: 116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE 175
           D N  K  K KA G TD +NP  E +K + +++  +T G GVDY  +C G    L  A++
Sbjct: 227 DINGEKFPKAKALGATDCLNP-RELDKPVQDVITELTAG-GVDYSLDCAGTAQTLKAAVD 284
Query: 176 TTXXXXXXXXXXXXXXDAM-VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKE 234
            T              D M +P   + L   GR++ GT FGG K+   +P L+   KNK+
Sbjct: 285 CTVLGWGSCTVVGAKVDEMTIPTVDVIL---GRSINGTFFGGWKSVDSVPNLVSDYKNKK 341
Query: 235 FKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
           F L  L+TH +  E I+ AI L+K+   ++ ++T
Sbjct: 342 FDLDLLVTHALPFESINDAIDLMKEGKSIRTILT 375

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  148 bits (373), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/274 (33%), Positives = 137/274 (50%), Gaps = 11/274 (4%)
Query: 1   MTNLC-----LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDP 55
           +TNLC      KYP     LM D TSR + +G+ +YH    S++S+Y V+    + +VD 
Sbjct: 107 LTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDD 166
Query: 56  SIDPSDASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGI 115
             +      + CGF++GYGAA   AKV                      ++ GA++II I
Sbjct: 167 EANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAI 226
Query: 116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE 175
           D N  K  K KA G TD +NP  E +K + +++  +T G GVDY  +C G    L  A++
Sbjct: 227 DINGEKFPKAKALGATDCLNP-RELDKPVQDVITELTAG-GVDYSLDCAGTAQTLKAAVD 284
Query: 176 TTXXXXXXXXXXXXXXDAM-VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKE 234
            T              D M +P   + L   GR++ GT FGG K+   +P L+   KNK+
Sbjct: 285 CTVLGWGSCTVVGAKVDEMTIPTVDVIL---GRSINGTFFGGWKSVDSVPNLVSDYKNKK 341
Query: 235 FKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
           F L  L+TH +  E I+ AI L+K+   ++ ++T
Sbjct: 342 FDLDLLVTHALPFESINDAIDLMKEGKSIRTILT 375

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/272 (32%), Positives = 139/272 (51%), Gaps = 10/272 (3%)
Query: 2   TNLCLK-YPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
           TN C+K +      +M    +R + +G+K+      ST+S+Y V++   V K+DPS    
Sbjct: 109 TNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLD 168
Query: 61  DASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPW 120
               L CG +TG+GAA   AKVE                        GA +II +D NP 
Sbjct: 169 TVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD 228
Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXX- 179
           K EK K FG TDF+NP+D  ++ IS+++  +T+G GVD+  EC G   ++  ALE+    
Sbjct: 229 KFEKAKVFGATDFVNPNDH-SEPISQVLSKMTNG-GVDFSLECVGNVGVMRNALESCLKG 286
Query: 180 --XXXXXXXXXXXXDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKL 237
                          A  P+ +IA    GRT KG+ FGG K K  +P ++    +K+ KL
Sbjct: 287 WGVSVLVGWTDLHDVATRPIQLIA----GRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKL 342
Query: 238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
            + +TH + LE ++ AI L+K   C++ ++++
Sbjct: 343 DEFITHRMPLESVNDAIDLMKHGKCIRTVLSL 374

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score =  144 bits (363), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 93/276 (33%), Positives = 136/276 (49%), Gaps = 15/276 (5%)
Query: 1   MTNLC-----LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDP 55
           +TNLC     LK P +   LM D TSR + +G+ +YH F  ST+S+Y V+    + K+D 
Sbjct: 110 LTNLCGKISNLKSPASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDD 169
Query: 56  SIDPSDASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGI 115
             +      L CGF+TGYGAA   AKV                      +  GA++IIGI
Sbjct: 170 DANLERVCLLGCGFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGI 229
Query: 116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE 175
           D N  K  K KA G TD +NP D  +K I E++  +T G GVD+  +C G    +  AL+
Sbjct: 230 DINSEKFVKAKALGATDCLNPRDL-HKPIQEVIIELTKG-GVDFALDCAGGSETMKAALD 287
Query: 176 TTXXXXXXXXXXXXXXDA----MVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCK 231
            T               +    + P  +I     GRT+ GT FGG K+   +P L+   K
Sbjct: 288 CTTAGWGSCTFIGVAAGSKGLTVFPEELII----GRTINGTFFGGWKSVDSIPKLVTDYK 343
Query: 232 NKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
           NK+F L  L+TH +  ++I +A  L+ Q   ++ ++
Sbjct: 344 NKKFNLDALVTHTLPFDKISEAFDLMNQGKSIRTIL 379

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score =  144 bits (362), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 87/266 (32%), Positives = 136/266 (51%), Gaps = 2/266 (0%)
Query: 3   NLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDA 62
           NLC++  I   G++ D T+R + +G+ ++H  + ST++EY V+D + V K+D +  P   
Sbjct: 109 NLCIRSDITGRGVLADGTTRFTCKGKPVHHFLNTSTFTEYTVVDESSVAKIDDAAPPEKV 168
Query: 63  SFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPWKK 122
             + CGF+TGYGAA K  KV+                     +  GA++IIGID N  K 
Sbjct: 169 CLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKF 228
Query: 123 EKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXX 182
           EK  A G T+ I+P D   K ISE++  +T G  V Y FE  G    + +AL +      
Sbjct: 229 EKAMAVGATECISPKDS-TKPISEVLSEMT-GNNVGYTFEVIGHLETMIDALASCHMNYG 286
Query: 183 XXXXXXXXXDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLT 242
                     A +      L   GRT KG  FGG+K++ D+P L+ +   K+F L QL+T
Sbjct: 287 TSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLIT 346
Query: 243 HHVKLEEIDKAIQLLKQPDCVKVLIT 268
           H +  ++I +  +LL     ++ ++T
Sbjct: 347 HVLPFKKISEGFELLNSGQSIRTVLT 372

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score =  144 bits (362), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 87/266 (32%), Positives = 136/266 (51%), Gaps = 2/266 (0%)
Query: 3   NLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDA 62
           NLC++  I   G++ D T+R + +G+ ++H  + ST++EY V+D + V K+D +  P   
Sbjct: 109 NLCIRSDITGRGVLADGTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKV 168
Query: 63  SFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPWKK 122
             + CGF+TGYGAA K  KV+                     +  GA++IIGID N  K 
Sbjct: 169 CLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKF 228
Query: 123 EKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXX 182
           EK  A G T+ I+P D   K ISE++  +T G  V Y FE  G    + +AL +      
Sbjct: 229 EKAMAVGATECISPKDS-TKPISEVLSEMT-GNNVGYTFEVIGHLETMIDALASCHMNYG 286
Query: 183 XXXXXXXXXDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLT 242
                     A +      L   GRT KG  FGG+K++ D+P L+ +   K+F L QL+T
Sbjct: 287 TSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLIT 346
Query: 243 HHVKLEEIDKAIQLLKQPDCVKVLIT 268
           H +  ++I +  +LL     ++ ++T
Sbjct: 347 HVLPFKKISEGFELLNSGQSIRTVLT 372

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/273 (33%), Positives = 136/273 (49%), Gaps = 11/273 (4%)
Query: 2   TNLCLKYPIALN-GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
           TNLC K  +    GLM D TSR + +G+ + H    ST+SEY V+    V K+DP     
Sbjct: 108 TNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLD 167
Query: 61  DASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPW 120
               L CG +TGYGAA   AK+E                     ++ GA++IIG+D N  
Sbjct: 168 KVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKD 227
Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETT--- 177
           K  + K FG T+ INP D  +K I E++  +T G GVDY FEC G   ++  ALE     
Sbjct: 228 KFARAKEFGATECINPQDF-SKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKG 285
Query: 178 -XXXXXXXXXXXXXXDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFK 236
                           A  P  ++     GRT KGT FGG K+   +P L+ +  +K+ K
Sbjct: 286 WGVSVVVGVAASGEEIATRPFQLVT----GRTWKGTAFGGWKSVESVPKLVSEYMSKKIK 341
Query: 237 LHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
           + + +TH++  +EI+KA +L+     ++ ++ I
Sbjct: 342 VDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI 374

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/273 (33%), Positives = 136/273 (49%), Gaps = 11/273 (4%)
Query: 2   TNLCLKYPIALN-GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
           TNLC K  +    GLM D TSR + +G+ + H    ST+SEY V+    V K+DP     
Sbjct: 107 TNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLD 166
Query: 61  DASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPW 120
               L CG +TGYGAA   AK+E                     ++ GA++IIG+D N  
Sbjct: 167 KVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKD 226
Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETT--- 177
           K  + K FG T+ INP D  +K I E++  +T G GVDY FEC G   ++  ALE     
Sbjct: 227 KFARAKEFGATECINPQDF-SKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKG 284
Query: 178 -XXXXXXXXXXXXXXDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFK 236
                           A  P  ++     GRT KGT FGG K+   +P L+ +  +K+ K
Sbjct: 285 WGVSVVVGVAASGEEIATRPFQLVT----GRTWKGTAFGGWKSVESVPKLVSEYMSKKIK 340
Query: 237 LHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
           + + +TH++  +EI+KA +L+     ++ ++ I
Sbjct: 341 VDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI 373

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/273 (33%), Positives = 136/273 (49%), Gaps = 11/273 (4%)
Query: 2   TNLCLKYPIALN-GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
           TNLC K  +    GLM D TSR + +G+ + H    ST+SEY V+    V K+DP     
Sbjct: 107 TNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLD 166
Query: 61  DASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPW 120
               L CG +TGYGAA   AK+E                     ++ GA++IIG+D N  
Sbjct: 167 KVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKD 226
Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETT--- 177
           K  + K FG T+ INP D  +K I E++  +T G GVDY FEC G   ++  ALE     
Sbjct: 227 KFARAKEFGATECINPQDF-SKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKG 284
Query: 178 -XXXXXXXXXXXXXXDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFK 236
                           A  P  ++     GRT KGT FGG K+   +P L+ +  +K+ K
Sbjct: 285 WGVSVVVGVAASGEEIATRPFQLVT----GRTWKGTAFGGWKSVESVPKLVSEYMSKKIK 340
Query: 237 LHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
           + + +TH++  +EI+KA +L+     ++ ++ I
Sbjct: 341 VDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI 373

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/273 (33%), Positives = 136/273 (49%), Gaps = 11/273 (4%)
Query: 2   TNLCLKYPIALN-GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
           TNLC K  +    GLM D TSR + +G+ + H    ST+SEY V+    V K+DP     
Sbjct: 108 TNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLD 167
Query: 61  DASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPW 120
               L CG +TGYGAA   AK+E                     ++ GA++IIG+D N  
Sbjct: 168 KVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKD 227
Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETT--- 177
           K  + K FG T+ INP D  +K I E++  +T G GVDY FEC G   ++  ALE     
Sbjct: 228 KFARAKEFGATECINPQDF-SKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKG 285
Query: 178 -XXXXXXXXXXXXXXDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFK 236
                           A  P  ++     GRT KGT FGG K+   +P L+ +  +K+ K
Sbjct: 286 WGVSVVVGVAASGEEIATRPFQLVT----GRTWKGTAFGGWKSVESVPKLVSEYMSKKIK 341
Query: 237 LHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
           + + +TH++  +EI+KA +L+     ++ ++ I
Sbjct: 342 VDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI 374

>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 136/272 (50%), Gaps = 11/272 (4%)
Query: 3   NLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           N CLK  +++  G M D TSR + RG+ ++H    ST+S+Y V+D   V K+D +     
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 62  ASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPWK 121
              + CGF+TGYG+A K AKV +                    +  GAA+IIG+D N  K
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK 228
Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXX 181
             K K  G T+ +NP D   K I E++  +++G GVD+ FE  G    +  AL       
Sbjct: 229 FAKAKEVGATECVNPQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAY 286
Query: 182 XXXXXXXXXXD----AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKL 237
                     D    +M P+ +++    GRT KG  FGG K+K  +P L+     K+F L
Sbjct: 287 GVSVIVAVTPDSQNLSMNPMLLLS----GRTWKGAIFGGFKSKDSVPKLVADFMAKKFAL 342
Query: 238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
             L+TH +  E+I++   LL+  + ++ ++T 
Sbjct: 343 DPLITHVLPFEKINEGFDLLRSGESIRTILTF 374

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 133/270 (49%), Gaps = 10/270 (3%)
Query: 3   NLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDA 62
           NLCLK      G M D TSR + RG+ ++H    ST+S+Y V+D   V K+D +      
Sbjct: 109 NLCLKNLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKV 168
Query: 63  SFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPWKK 122
             + CGF+TGYG+A K AKV +                    +  GAA+IIG+D N  K 
Sbjct: 169 CLVGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF 228
Query: 123 EKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXX 182
            K K  G T+ +NP D   K I E++  +++G GVD+ FE  G    +  AL        
Sbjct: 229 AKAKEVGATECVNPQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVAALSCCQEAYG 286
Query: 183 XXXXXXXXXD----AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLH 238
                    D    +M P+ +++    GRT KG  FGG K+K  +P L+     K+F L 
Sbjct: 287 VSVIVGVPPDSQNLSMNPMLLLS----GRTWKGAIFGGFKSKDSVPKLVADFMAKKFALD 342
Query: 239 QLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
            L+TH +  E+I++   LL+    ++ ++T
Sbjct: 343 PLITHVLPFEKINEGFDLLRSGKSIRTILT 372

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 135/269 (50%), Gaps = 5/269 (1%)
Query: 3   NLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           N CLK  +++  G M D TSR + RG+ ++H    ST+S+Y V+D   V K+D +     
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 62  ASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPWK 121
              + CGF+TGYG+A K AKV +                    +  GAA+IIG+D N  K
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK 228
Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXX 181
             K K  G T+ +NP D   K I E++  +++G GVD+ FE  G    +  AL       
Sbjct: 229 FAKAKEVGATECVNPQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAY 286
Query: 182 XXXXXXXXXXDAM-VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQL 240
                     D+  + +N + L   GRT KG  FGG K+K  +P L+     K+F L  L
Sbjct: 287 GVSVIVGVPPDSQNLSMNPMLLL-SGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPL 345
Query: 241 LTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
           +TH +  E+I++   LL+  + ++ ++T 
Sbjct: 346 ITHVLPFEKINEGFDLLRSGESIRTILTF 374

>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 136/272 (50%), Gaps = 11/272 (4%)
Query: 3   NLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           N CLK  +++  G M D TSR + RG+ ++H    ST+S+Y V+D   V K+D +     
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 62  ASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPWK 121
              + CGF+TGYG+A K AKV +                    +  GAA+IIG+D N  K
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK 228
Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXX 181
             K K  G T+ +NP D   K I E++  +++G GVD+ FE  G    +  AL       
Sbjct: 229 FAKAKEVGATECVNPQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAY 286
Query: 182 XXXXXXXXXXD----AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKL 237
                     D    +M P+ +++    GRT KG  FGG K+K  +P L+     K+F L
Sbjct: 287 GVSVISGVPPDSQNLSMNPMLLLS----GRTWKGAIFGGFKSKDSVPKLVADFMAKKFAL 342
Query: 238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
             L+TH +  E+I++   LL+  + ++ ++T 
Sbjct: 343 DPLITHVLPFEKINEGFDLLRSGESIRTILTF 374

>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 135/269 (50%), Gaps = 5/269 (1%)
Query: 3   NLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           N CLK  +++  G M D TSR + RG+ ++H    ST+S+Y V+D   V K+D +     
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 62  ASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPWK 121
              + CGF+TGYG+A K AKV +                    +  GAA+IIG+D N  K
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDK 228
Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXX 181
             K K  G T+ +NP D   K I E++  +++G GVD+ FE  G    +  AL       
Sbjct: 229 FAKAKEVGATECVNPQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAY 286
Query: 182 XXXXXXXXXXDAM-VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQL 240
                     D+  + +N + L   GRT KG  FGG K+K  +P L+     K+F L  L
Sbjct: 287 GVSVIVGVPPDSQNLSMNPMLLL-SGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPL 345
Query: 241 LTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
           +TH +  E+I++   LL+  + ++ ++T 
Sbjct: 346 ITHVLPFEKINEGFDLLRSGESIRTILTF 374

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 133/270 (49%), Gaps = 10/270 (3%)
Query: 3   NLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDA 62
           NLCLK      G M D TSR + RG+ ++H    ST+S+Y V+D   V K+D +      
Sbjct: 109 NLCLKNLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKV 168
Query: 63  SFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPWKK 122
             + CGF+TGYG+A K AKV +                    +  GAA+IIG+D N  K 
Sbjct: 169 CLVGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKF 228
Query: 123 EKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXXX 182
            K K  G T+ +NP D   K I E++  +++G GVD+ FE  G    +  AL        
Sbjct: 229 AKAKEVGATECVNPQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVAALSCCQEAYG 286
Query: 183 XXXXXXXXXD----AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLH 238
                    D    +M P+ +++    GRT KG  FGG K+K  +P L+     K+F L 
Sbjct: 287 VSVIVGVPPDSQNLSMNPMLLLS----GRTWKGAIFGGFKSKDSVPKLVADFMAKKFALD 342
Query: 239 QLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
            L+TH +  E+I++   LL+    ++ ++T
Sbjct: 343 PLITHVLPFEKINEGFDLLRSGKSIRTILT 372

>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 136/272 (50%), Gaps = 11/272 (4%)
Query: 3   NLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           N CLK  +++  G M D TSR + RG+ ++H    ST+S+Y V+D   V K+D +     
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 62  ASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPWK 121
              + CGF+TGYG+A K AKV +                    +  GAA+IIG+D N  K
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK 228
Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXX 181
             K K  G T+ +NP D   K I E++  +++G GVD+ FE  G    +  AL       
Sbjct: 229 FAKAKEVGATECVNPQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAY 286
Query: 182 XXXXXXXXXXD----AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKL 237
                     D    +M P+ +++    GRT KG  FGG K+K  +P L+     K+F L
Sbjct: 287 GVSVITGVPPDSQNLSMNPMLLLS----GRTWKGAIFGGFKSKDSVPKLVADFMAKKFAL 342
Query: 238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
             L+TH +  E+I++   LL+  + ++ ++T 
Sbjct: 343 DPLITHVLPFEKINEGFDLLRSGESIRTILTF 374

>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 136/272 (50%), Gaps = 11/272 (4%)
Query: 3   NLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           N CLK  +++  G M D TSR + RG+ ++H    ST+S+Y V+D   V K+D +     
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 62  ASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPWK 121
              + CGF+TGYG+A K AKV +                    +  GAA+IIG+D N  K
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDK 228
Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXX 181
             K K  G T+ +NP D   K I E++  +++G GVD+ FE  G    +  AL       
Sbjct: 229 FAKAKEVGATECVNPQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAY 286
Query: 182 XXXXXXXXXXD----AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKL 237
                     D    +M P+ +++    GRT KG  FGG K+K  +P L+     K+F L
Sbjct: 287 GVSVIVGVPPDSQNLSMNPMLLLS----GRTWKGAIFGGFKSKDSVPKLVADFMAKKFAL 342
Query: 238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
             L+TH +  E+I++   LL+  + ++ ++T 
Sbjct: 343 DPLITHVLPFEKINEGFDLLRSGESIRTILTF 374

>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 136/271 (50%), Gaps = 11/271 (4%)
Query: 3   NLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           N CLK  +++  G M D TSR + RG+ ++H    ST+S+Y V+D   V K+D +     
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 62  ASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPWK 121
              + CGF+TGYG+A K AKV +                    +  GAA+IIG+D N  K
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK 228
Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXX 181
             K K  G T+ +NP D   K I E++  +++G GVD+ FE  G    +  AL       
Sbjct: 229 FAKAKEVGATECVNPQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAY 286
Query: 182 XXXXXXXXXXD----AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKL 237
                     D    +M P+ +++    GRT KG  FGG K+K  +P L+     K+F L
Sbjct: 287 GVSVIVGVPPDSQNLSMNPMLLLS----GRTWKGAIFGGFKSKDSVPKLVADFMAKKFAL 342
Query: 238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
             L+TH +  E+I++   LL+  + ++ ++T
Sbjct: 343 DPLITHVLPFEKINEGFDLLRSGESIRTILT 373

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 136/272 (50%), Gaps = 11/272 (4%)
Query: 3   NLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           N CLK  +++  G M D TSR + RG+ ++H    ST+S+Y V+D   V K+D +     
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 62  ASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPWK 121
              + CGF+TGYG+A K AKV +                    +  GAA+IIG+D N  K
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK 228
Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXX 181
             K K  G T+ +NP D   K I E++  +++G GVD+ FE  G    +  AL       
Sbjct: 229 FAKAKEVGATECVNPQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAY 286
Query: 182 XXXXXXXXXXD----AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKL 237
                     D    +M P+ +++    GRT KG  FGG K+K  +P L+     K+F L
Sbjct: 287 GVSVIVGVPPDSQNLSMNPMLLLS----GRTWKGAIFGGFKSKDSVPKLVADFMAKKFAL 342
Query: 238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
             L+TH +  E+I++   LL+  + ++ ++T 
Sbjct: 343 DPLITHVLPFEKINEGFDLLRSGESIRTILTF 374

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 135/269 (50%), Gaps = 5/269 (1%)
Query: 3   NLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           N CLK  +++  G M D TSR + RG+ ++H    ST+S+Y V+D   V K+D +     
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 62  ASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPWK 121
              + CGF+TGYG+A K AKV +                    +  GAA+IIG+D N  K
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK 228
Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXX 181
             K K  G T+ +NP D   K I E++  +++G GVD+ FE  G    +  AL       
Sbjct: 229 FAKAKEVGATECVNPQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAY 286
Query: 182 XXXXXXXXXXDAM-VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQL 240
                     D+  + +N + L   GRT KG  FGG K+K  +P L+     K+F L  L
Sbjct: 287 GVSVIVGVPPDSQNLSMNPMLLL-SGRTWKGCIFGGFKSKDSVPKLVADFMAKKFALDPL 345
Query: 241 LTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
           +TH +  E+I++   LL+  + ++ ++T 
Sbjct: 346 ITHVLPFEKINEGFDLLRSGESIRTILTF 374

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/272 (31%), Positives = 136/272 (50%), Gaps = 11/272 (4%)
Query: 3   NLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD 61
           N CLK  +++  G M D TSR + RG+ ++H    ST+S+Y V+D   V K+D +     
Sbjct: 109 NFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEK 168
Query: 62  ASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPWK 121
              + CGF+TGYG+A K AKV +                    +  GAA+IIG+D N  +
Sbjct: 169 VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDR 228
Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXXX 181
             K K  G T+ +NP D   K I E++  +++G GVD+ FE  G    +  AL       
Sbjct: 229 FAKAKEVGATECVNPQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAY 286
Query: 182 XXXXXXXXXXD----AMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKL 237
                     D    +M P+ +++    GRT KG  FGG K+K  +P L+     K+F L
Sbjct: 287 GVSVIVGVPPDSQNLSMNPMLLLS----GRTWKGAIFGGFKSKDSVPKLVADFMAKKFAL 342
Query: 238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
             L+TH +  E+I++   LL+  + ++ ++T 
Sbjct: 343 DPLITHVLPFEKINEGFDLLRSGESIRTILTF 374

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 131/276 (47%), Gaps = 17/276 (6%)
Query: 2   TNLCLKYPIA-LNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
           +N CLK  +    G + D T R + RG+ ++H    ST+S+Y V+D N V K+D +    
Sbjct: 108 SNYCLKNDLGNPRGTLQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLE 167
Query: 61  DASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPW 120
               + CGF+TGYG+A   AKV                      +  GAA+II +D N  
Sbjct: 168 KVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKD 227
Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG-----VPSLLS--EA 173
           K  K K  G T+ INP D   K I E++K +T G GVD+ FE  G     + SLL   EA
Sbjct: 228 KFAKAKELGATECINPQDY-KKPIQEVLKEMTDG-GVDFSFEVIGRLDTMMASLLCCHEA 285
Query: 174 LETTXXXXXXXXXXXXXXDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNK 233
             T+              + M+ L        GRT KG  +GG K+K  +P L+     K
Sbjct: 286 CGTSVIVGVPPASQNLSINPMLLLT-------GRTWKGAVYGGFKSKEGIPKLVADFMAK 338
Query: 234 EFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
           +F L  L+TH +  E+I++   LL     ++ ++T 
Sbjct: 339 KFSLDALITHVLPFEKINEGFDLLHSGKSIRTVLTF 374

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 131/276 (47%), Gaps = 17/276 (6%)
Query: 2   TNLCLKYPIA-LNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
           +N CLK  +    G + D T R + RG+ ++H    ST+S+Y V+D N V K+D +    
Sbjct: 108 SNYCLKNDLGNPRGTLQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLE 167
Query: 61  DASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPW 120
               + CGF+TGYG+A   AKV                      +  GAA+II +D N  
Sbjct: 168 KVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKD 227
Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG-----VPSLL--SEA 173
           K  K K  G T+ INP D   K I E++K +T G GVD+ FE  G     + SLL   EA
Sbjct: 228 KFAKAKELGATECINPQDY-KKPIQEVLKEMTDG-GVDFSFEVIGRLDTMMASLLCCHEA 285
Query: 174 LETTXXXXXXXXXXXXXXDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNK 233
             T+              + M+ L        GRT KG  +GG K+K  +P L+     K
Sbjct: 286 CGTSVIVGVPPASQNLSINPMLLLT-------GRTWKGAVYGGFKSKEGIPKLVADFMAK 338
Query: 234 EFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
           +F L  L+TH +  E+I++   LL     ++ ++T 
Sbjct: 339 KFSLDALITHVLPFEKINEGFDLLHSGKSIRTVLTF 374

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  132 bits (331), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 131/276 (47%), Gaps = 17/276 (6%)
Query: 2   TNLCLKYPIA-LNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
           +N CLK  +    G + D T R + RG+ ++H    ST+S+Y V+D N V K+D +    
Sbjct: 108 SNYCLKNDLGNPRGTLQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLE 167
Query: 61  DASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPW 120
               + CGF+TGYG+A   AKV                      +  GAA+II +D N  
Sbjct: 168 KVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKD 227
Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG-----VPSLLS--EA 173
           K  K K  G T+ INP D   K I E++K +T G GVD+ FE  G     + SLL   EA
Sbjct: 228 KFAKAKELGATECINPQDY-KKPIQEVLKEMTDG-GVDFSFEVIGRLDTMMASLLCCHEA 285
Query: 174 LETTXXXXXXXXXXXXXXDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNK 233
             T+              + M+ L        GRT KG  +GG K+K  +P L+     K
Sbjct: 286 CGTSVIVGVPPASQNLSINPMLLLT-------GRTWKGAVYGGFKSKEGIPKLVADFMAK 338
Query: 234 EFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
           +F L  L+TH +  E+I++   LL     ++ ++T 
Sbjct: 339 KFSLDALITHVLPFEKINEGFDLLHSGKSIRTVLTF 374

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score =  130 bits (326), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 132/276 (47%), Gaps = 17/276 (6%)
Query: 2   TNLCLKYPIA-LNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
           +N CLK  +    G + D T R +  G+ ++H    ST+S+Y V+D N V K+D +    
Sbjct: 108 SNYCLKNDLGNPRGTLQDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLE 167
Query: 61  DASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPW 120
               + CGF+TGYG+A K AKV                      +  GAA+II +D N  
Sbjct: 168 KVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKD 227
Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG-----VPSLLS--EA 173
           K  K K  G T+ INP D   K I E++K +T G GVD+ FE  G     + SLL   EA
Sbjct: 228 KFAKAKELGATECINPQDY-KKPIQEVLKEMTDG-GVDFSFEVIGQLDTMMASLLCCHEA 285
Query: 174 LETTXXXXXXXXXXXXXXDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNK 233
             T+              + M+ L        GRT KG  FGG K+K  +P L+     K
Sbjct: 286 CGTSVIVGVPPDSQNLSINPMLLLT-------GRTWKGAIFGGFKSKESVPKLVADFMAK 338
Query: 234 EFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
           +F L  L+T+ +  E+I++   LL+    ++ ++T 
Sbjct: 339 KFSLDALITNVLPFEKINEGFDLLRSGKSIRTVLTF 374

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/276 (32%), Positives = 130/276 (47%), Gaps = 17/276 (6%)
Query: 2   TNLCLKYPIA-LNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
           +N CLK  +    G + D T R + RG+ ++H    ST+S+Y V+D N V K+D +    
Sbjct: 108 SNYCLKNDLGNPRGTLQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLE 167
Query: 61  DASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPW 120
               + CGF+TGYG+A   AKV                      +  GAA+II +D N  
Sbjct: 168 KVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKD 227
Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG-----VPSLLS--EA 173
           K  K K  G T+ INP D   K I E++K +T G GVD+ FE  G     + SLL   EA
Sbjct: 228 KFAKAKELGATECINPQDY-KKPIQEVLKEMTDG-GVDFSFEVIGRLDTMMASLLCCHEA 285
Query: 174 LETTXXXXXXXXXXXXXXDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNK 233
             T+              + M+ L        GRT KG  +GG K+K  +P L+     K
Sbjct: 286 CGTSVIVGVPPASQNLSINPMLLLT-------GRTWKGAVYGGFKSKEGIPKLVADFMAK 338
Query: 234 EFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
           +F L  L+TH +  E+I++   LL     +  ++T 
Sbjct: 339 KFSLDALITHVLPFEKINEGFDLLHSGKSICTVLTF 374

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score =  127 bits (318), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 89/274 (32%), Positives = 130/274 (47%), Gaps = 17/274 (6%)
Query: 2   TNLCLKYPIA-LNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
           +N CLK  ++   G + D TSR + R + ++H    ST+S+Y V+D N V K+D +    
Sbjct: 108 SNYCLKNDVSNPQGTLQDGTSRFTCRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLE 167
Query: 61  DASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPW 120
               + CGF+TGYG+A   AKV                      +  GAA+II +D N  
Sbjct: 168 KVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDINKD 227
Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG-----VPSLLS--EA 173
           K  K K  G T+ INP D   K I E++K +T G GVD+ FE  G     + SLL   EA
Sbjct: 228 KFAKAKELGATECINPQDY-KKPIQEVLKEMTDG-GVDFSFEVIGRLDTMMASLLCCHEA 285
Query: 174 LETTXXXXXXXXXXXXXXDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNK 233
             T+              + M+ L        GRT KG   GG K+K  +P L+     K
Sbjct: 286 CGTSVIVGVPPDSQNLSMNPMLLLT-------GRTWKGAILGGFKSKECVPKLVADFMAK 338
Query: 234 EFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
           +F L  L+TH +  E+I++   LL     ++ ++
Sbjct: 339 KFSLDALITHVLPFEKINEGFDLLHSGKSIRTIL 372

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 131/267 (49%), Gaps = 5/267 (1%)
Query: 2   TNLCLKYPI-ALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
           +N C K  + A  GLM D TSR + RG+ +Y++   ST++EY V+    V K+DP   P 
Sbjct: 109 SNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKA-PL 167
Query: 61  DASFLSCGFTTGYGAAWKEAKVEKXXXXXXXXXXXXXXXXXXXXRMHGAAKIIGIDKNPW 120
           ++  + CGF TGYGAA   AKV                      +  GA++IIG+  +  
Sbjct: 168 ESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD 227
Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTXXX 180
           K  K    G T+ +NP D  +K I E++   T+G GVDY  EC G    +  AL++T   
Sbjct: 228 KFPKAIELGATECLNPKDY-DKPIYEVICEKTNG-GVDYAVECAGRIETMMNALQSTYCG 285
Query: 181 XXXXXXXXXXXDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQL 240
                                L   GR+LKG+ FGG K + ++  L+D    K+  ++ L
Sbjct: 286 SGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKKINVNFL 344
Query: 241 LTHHVKLEEIDKAIQLLKQPDCVKVLI 267
           ++  + L++I+KA +LL     V+ ++
Sbjct: 345 VSTKLTLDQINKAFELLSSGQGVRSIM 371

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 87/223 (39%), Gaps = 7/223 (3%)
Query: 32  HIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKXXXXXXX 91
           H F+ S+++ Y +   N  VKV   +       L CG  TG GA     KV         
Sbjct: 138 HFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTW 197
Query: 92  XXXXXXXXXXXXXRMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPD-DEPNKSISELVKG 150
                        ++ GA+ II +D    + E  K  G T  IN    +P  +I E+  G
Sbjct: 198 GAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDG 257
Query: 151 ITHGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDAMVPLNVIALACGGRTLK 210
                GV++  E TG P +L + ++                      +V  L  GG+T+ 
Sbjct: 258 -----GVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTIL 312
Query: 211 GTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKA 253
           G   G    K  +P L+   +  +F   QL+  +   +EI++A
Sbjct: 313 GVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKFYA-FDEINQA 354

>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/243 (22%), Positives = 101/243 (41%), Gaps = 13/243 (5%)
Query: 34  FSCSTWSEYM-VIDANYVVKVDPSIDP-SDASFLSCGFTTGYGAAWKEAKVEKXXXXXXX 91
           F    + EY  V DA+  + + P   P  +A  ++   TTG+  A + A +E        
Sbjct: 115 FKDGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIELGATVAVL 173
Query: 92  XXXXXXXXXXXXXRMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGI 151
                        ++ GA +II +   P   +  K +G TD +N  D P   I   +  +
Sbjct: 174 GIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDGP---IESQIMNL 230
Query: 152 THGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDAMVPLNVIALACG--GRTL 209
           T G GVD      G   +++ A++                  ++P+  +   CG   +T+
Sbjct: 231 TEGKGVDAAIIAGGNADIMATAVKIVKPGGTIANVNYFGEGEVLPVPRLEWGCGMAHKTI 290
Query: 210 KGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTH-HVKLEEIDKAIQLLKQ--PDCVKVL 266
           KG    G + ++++  L D        L +L+TH +   + I++A+ L+K    D +K +
Sbjct: 291 KGGLCPGGRLRAEM--LRDMVVYNRVDLSKLVTHVYHGFDHIEEALLLMKDKPKDLIKAV 348
Query: 267 ITI 269
           + +
Sbjct: 349 VIL 351

>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
Query: 105 RMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT 164
           R  GA  +I I  +P + +  +  G    +N  +   +   + +  ITHG G D+  E T
Sbjct: 216 RSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEAT 275
Query: 165 GVPSLLSEALETTXXXXXXXXXXXXXXDAMVPLNVIALACGGRTLKGTTFGGI---KTKS 221
           G    L E  E                   VP  V         LK  TF GI    T  
Sbjct: 276 GDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWL----VLKNATFKGIWVSDTSH 331
Query: 222 DLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
            + T+    +N +  L +L+TH + L+E +KA++L++  + +KV++
Sbjct: 332 FVKTVSITSRNYQL-LSKLITHRLPLKEANKALELMESREALKVIL 376

>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/243 (23%), Positives = 100/243 (41%), Gaps = 13/243 (5%)
Query: 34  FSCSTWSEYM-VIDANYVVKVDPSIDP-SDASFLSCGFTTGYGAAWKEAKVEKXXXXXXX 91
           F    + EY  V DA+  + + P   P  +A  ++   TTG+  A + A +E        
Sbjct: 115 FKDGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVI 173
Query: 92  XXXXXXXXXXXXXRMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGI 151
                        ++ GA +IIG+   P   E  K +G TD +N     N  I + V  +
Sbjct: 174 GIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILN---YKNGHIEDQVMKL 230
Query: 152 THGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDAMVPLNVIALACG--GRTL 209
           T+G GVD      G    LS+A++                   + +  +   CG   +T+
Sbjct: 231 TNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTI 290
Query: 210 KGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTH-HVKLEEIDKAIQLLKQ--PDCVKVL 266
           KG    G + +++   L D        L +L+TH +   + I++A+ L+K    D +K +
Sbjct: 291 KGGLCPGGRLRAE--RLRDMVVYNRVDLSKLVTHVYHGFDHIEEALLLMKDKPKDLIKAV 348
Query: 267 ITI 269
           + +
Sbjct: 349 VIL 351

>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium Beijerinckii Alcohol Dehydrogenase Is Critical For Thermostabilization Length = 351

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 100/243 (41%), Gaps = 13/243 (5%)
Query: 34  FSCSTWSEYM-VIDANYVVKVDPSIDP-SDASFLSCGFTTGYGAAWKEAKVEKXXXXXXX 91
           F    + EY  V DA+  + + P   P  +A  ++   TTG+  A + A ++        
Sbjct: 115 FKDGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIQMGSSVVVI 173
Query: 92  XXXXXXXXXXXXXRMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGI 151
                        ++ GA +IIG+   P   E  K +G TD +N     N  I + V  +
Sbjct: 174 GIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILN---YKNGHIVDQVMKL 230
Query: 152 THGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDAMVPLNVIALACG--GRTL 209
           T+G GVD      G    LS+A+                    + +  +   CG   +T+
Sbjct: 231 TNGKGVDRVIMAGGGSETLSQAVSMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTI 290
Query: 210 KGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTH-HVKLEEIDKAIQLLKQ--PDCVKVL 266
           KG    G + ++++  L D        L +L+TH +   + I++A+ L+K    D +K +
Sbjct: 291 KGGLCPGGRLRAEM--LRDMVVYNRVDLSKLVTHVYHGFDHIEEALLLMKDKPKDLIKAV 348
Query: 267 ITI 269
           + +
Sbjct: 349 VIL 351

>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 100/243 (41%), Gaps = 13/243 (5%)
Query: 34  FSCSTWSEYM-VIDANYVVKVDPSIDP-SDASFLSCGFTTGYGAAWKEAKVEKXXXXXXX 91
           F    + EY  V DA+  + + P   P  +A  ++   TTG+  A + A ++        
Sbjct: 115 FKDGVFGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIQMGSSVVVI 173
Query: 92  XXXXXXXXXXXXXRMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGI 151
                        ++ GA +IIG+   P   E  K +G TD +N     N  I + V  +
Sbjct: 174 GIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILN---YKNGHIVDQVMKL 230
Query: 152 THGMGVDYCFECTGVPSLLSEALETTXXXXXXXXXXXXXXDAMVPLNVIALACG--GRTL 209
           T+G GVD      G    LS+A+                    + +  +   CG   +T+
Sbjct: 231 TNGKGVDRVIMAGGGSETLSQAVSMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTI 290
Query: 210 KGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTH-HVKLEEIDKAIQLLKQ--PDCVKVL 266
           KG    G + ++++  L D        L +L+TH +   + I++A+ L+K    D +K +
Sbjct: 291 KGGLCPGGRLRAEM--LRDMVVYNRVDLSKLVTHVYHGFDHIEEALLLMKDKPKDLIKAV 348
Query: 267 ITI 269
           + +
Sbjct: 349 VIL 351

>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 8/157 (5%)
Query: 105 RMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT 164
           ++ GA +II +   P   +  K +G TD +N  D P   I   +  +T G GVD      
Sbjct: 187 KLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDGP---IESQIMNLTEGKGVDAAIIAG 243
Query: 165 GVPSLLSEALETTXXXXXXXXXXXXXXDAMVPLNVIALACG--GRTLKGTTFGGIKTKSD 222
           G   +++ A++                  ++P+  +   CG   +T+KG    G + +  
Sbjct: 244 GNADIMATAVKIVKPGGTIANVNYFGEGEVLPVPRLEWGCGMAHKTIKGGLCPGGRLR-- 301
Query: 223 LPTLLDKCKNKEFKLHQLLTHHVK-LEEIDKAIQLLK 258
           +  L+D    K     +L+TH  +  + I+KA  L+K
Sbjct: 302 MERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMK 338

>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 8/157 (5%)
Query: 105 RMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT 164
           ++ GA +IIG+   P   E  K +G TD +N     N  I + V  +T+G GVD      
Sbjct: 187 KLRGAGRIIGVGSRPICVEAAKFYGATDILN---YKNGHIVDQVMKLTNGKGVDRVIMAG 243
Query: 165 GVPSLLSEALETTXXXXXXXXXXXXXXDAMVPLNVIALACG--GRTLKGTTFGGIKTKSD 222
           G    LS+A++                   + +  +   CG   +T+KG    G + +  
Sbjct: 244 GGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLR-- 301
Query: 223 LPTLLDKCKNKEFKLHQLLTHHVK-LEEIDKAIQLLK 258
           +  L+D    K     +L+TH  +  + I+KA  L+K
Sbjct: 302 MERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMK 338

>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 67/157 (42%), Gaps = 8/157 (5%)
Query: 105 RMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT 164
           ++ GA +IIG+   P   E  K +G TD +N     N  I + V  +T+G GVD      
Sbjct: 187 KLRGAGRIIGVGSRPICVEAAKFYGATDILN---YKNGHIVDQVMKLTNGKGVDRVIMAG 243
Query: 165 GVPSLLSEALETTXXXXXXXXXXXXXXDAMVPLNVIALACG--GRTLKGTTFGGIKTKSD 222
           G    LS+A+                    + +  +   CG   +T+KG    G + +  
Sbjct: 244 GGSETLSQAVSMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLR-- 301
Query: 223 LPTLLDKCKNKEFKLHQLLTHHVK-LEEIDKAIQLLK 258
           +  L+D    K     +L+TH  +  + I+KA  L+K
Sbjct: 302 MERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMK 338

>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 8/157 (5%)
Query: 105 RMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT 164
           ++ GA +II +   P   +  K +G TD +N  D P   I   +  +T G GVD      
Sbjct: 187 KLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYKDGP---IESQIMNLTEGKGVDAAIIAG 243
Query: 165 GVPSLLSEALETTXXXXXXXXXXXXXXDAMVPLNVIALACG--GRTLKGTTFGGIKTKSD 222
           G   +++ A++                  ++ +  +   CG   +T+KG    G + +  
Sbjct: 244 GNADIMATAVKIVKPGGTIANVNYFGEGEVLDVPRLEWGCGMAHKTIKGGLCPGGRLR-- 301
Query: 223 LPTLLDKCKNKEFKLHQLLTHHVK-LEEIDKAIQLLK 258
           +  L+D    K     +L+TH  +  + I+KA  L+K
Sbjct: 302 MERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMK 338

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-112
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	1e-112
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	1e-112
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	1e-110
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	1e-109
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	2e-91
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	5e-78
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	2e-44
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	3e-42
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	3e-42
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	5e-42
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	1e-39
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	2e-39
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	2e-39
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	2e-38
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	1e-37
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	9e-36
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	8e-35
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	3e-33
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	6e-33
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	2e-31
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	2e-30
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	1e-29
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	1e-29
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	9e-24
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	2e-22
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	9e-22
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	1e-20
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	6e-18
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	6e-18
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	1e-17
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	7e-17
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	6e-14
3gms_A	340	Putative NADPH:quinone reductase; structural genom	7e-14
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	9e-14
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	2e-13
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	1e-12
4eye_A	342	Probable oxidoreductase; structural genomics, niai	2e-12
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	3e-12
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	5e-12
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	1e-10
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	2e-10
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	2e-10
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	1e-09
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	3e-09
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	7e-09
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	1e-08
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	6e-08
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	4e-07
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	8e-07
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	2e-05
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	2e-05
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	1e-04

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  327 bits (840), Expect = e-112
 Identities = 101/270 (37%), Positives = 153/270 (56%), Gaps = 5/270 (1%)

Query: 1   MTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDP 59
             N CLK  +++  G M D TSR + RG+ ++H    ST+S+Y V+D   V K+D +   
Sbjct: 107 EGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPL 166

Query: 60  SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP 119
                + CGF+TGYG+A K AKV +GS+ AV GLG VGL  + G +  GAA+IIG+D N 
Sbjct: 167 EKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK 226

Query: 120 WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKV 179
            K  K K  G T+ +NP D   K I E++  +++G GVD+ FE  G    +  AL   + 
Sbjct: 227 DKFAKAKEVGATECVNPQDY-KKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQE 284

Query: 180 GKGKVIVIGV-GVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLH 238
             G  +++GV      + +N + L   GRT KG  FGG K+K  +P L+     K+F L 
Sbjct: 285 AYGVSVIVGVPPDSQNLSMNPMLLLS-GRTWKGAIFGGFKSKDSVPKLVADFMAKKFALD 343

Query: 239 QLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
            L+TH +  E+I++   LL+  + ++ ++T
Sbjct: 344 PLITHVLPFEKINEGFDLLRSGESIRTILT 373

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  326 bits (838), Expect = e-112
 Identities = 104/270 (38%), Positives = 155/270 (57%), Gaps = 4/270 (1%)

Query: 1   MTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDP 59
            TN C+K        +M    +R + +G+K+      ST+S+Y V++   V K+DPS   
Sbjct: 108 KTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPL 167

Query: 60  SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP 119
                L CG +TG+GAA   AKVE GS+ AV GLG VGL AV G    GA +II +D NP
Sbjct: 168 DTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP 227

Query: 120 WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKV 179
            K EK K FG TDF+NP+D  ++ IS+++  +T+G GVD+  EC G   ++  ALE+   
Sbjct: 228 DKFEKAKVFGATDFVNPNDH-SEPISQVLSKMTNG-GVDFSLECVGNVGVMRNALESCLK 285

Query: 180 GKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQ 239
           G G  +++G      V    I L   GRT KG+ FGG K K  +P ++    +K+ KL +
Sbjct: 286 GWGVSVLVGWTDLHDVATRPIQLIA-GRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDE 344

Query: 240 LLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
            +TH + LE ++ AI L+K   C++ ++++
Sbjct: 345 FITHRMPLESVNDAIDLMKHGKCIRTVLSL 374

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  326 bits (838), Expect = e-112
 Identities = 107/271 (39%), Positives = 153/271 (56%), Gaps = 5/271 (1%)

Query: 1   MTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDP 59
            TNLC K  +    GLM D TSR + +G+ + H    ST+SEY V+    V K+DP    
Sbjct: 106 KTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPL 165

Query: 60  SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP 119
                L CG +TGYGAA   AK+E GS  AV GLG VGL  + G ++ GA++IIG+D N 
Sbjct: 166 DKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK 225

Query: 120 WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKV 179
            K  + K FG T+ INP D  +K I E++  +T G GVDY FEC G   ++  ALE    
Sbjct: 226 DKFARAKEFGATECINPQDF-SKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHK 283

Query: 180 GKGKVIVIGV-GVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLH 238
           G G  +V+GV      +      L   GRT KGT FGG K+   +P L+ +  +K+ K+ 
Sbjct: 284 GWGVSVVVGVAASGEEIATRPFQLVT-GRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVD 342

Query: 239 QLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
           + +TH++  +EI+KA +L+     ++ ++ I
Sbjct: 343 EFVTHNLSFDEINKAFELMHSGKSIRTVVKI 373

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  320 bits (823), Expect = e-110
 Identities = 100/269 (37%), Positives = 156/269 (57%), Gaps = 7/269 (2%)

Query: 2   TNLCLKYPIA-LNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
           +N C K  +    GLM D TSR + RG+ +Y++   ST++EY V+    V K+DP   P 
Sbjct: 109 SNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKA-PL 167

Query: 61  DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW 120
           ++  + CGF TGYGAA   AKV  GS+ AV GLG VG  A+ G +  GA++IIG+  +  
Sbjct: 168 ESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD 227

Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVG 180
           K  K    G T+ +NP D  +K I E++   T+G GVDY  EC G    +  AL++T  G
Sbjct: 228 KFPKAIELGATECLNPKDY-DKPIYEVICEKTNG-GVDYAVECAGRIETMMNALQSTYCG 285

Query: 181 KGKVIVIGV-GVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQ 239
            G  +V+G+   +  +PL+ + L   GR+LKG+ FGG K + ++  L+D    K+  ++ 
Sbjct: 286 SGVTVVLGLASPNERLPLDPLLLLT-GRSLKGSVFGGFKGE-EVSRLVDDYMKKKINVNF 343

Query: 240 LLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
           L++  + L++I+KA +LL     V+ ++ 
Sbjct: 344 LVSTKLTLDQINKAFELLSSGQGVRSIMI 372

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  319 bits (821), Expect = e-109
 Identities = 101/272 (37%), Positives = 153/272 (56%), Gaps = 9/272 (3%)

Query: 2   TNLCLKY-----PIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPS 56
           TNLC K      P     LM D TSR + +G+ +YH    S++S+Y V+    + +VD  
Sbjct: 108 TNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDE 167

Query: 57  IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID 116
            +      + CGF++GYGAA   AKV  GS+ AV GLG VGL A+ G ++ GA++II ID
Sbjct: 168 ANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAID 227

Query: 117 KNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALET 176
            N  K  K KA G TD +NP +  +K + +++  +T G GVDY  +C G    L  A++ 
Sbjct: 228 INGEKFPKAKALGATDCLNPREL-DKPVQDVITELTAG-GVDYSLDCAGTAQTLKAAVDC 285

Query: 177 TKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFK 236
           T +G G   V+G      + +  + +   GR++ GT FGG K+   +P L+   KNK+F 
Sbjct: 286 TVLGWGSCTVVGAK-VDEMTIPTVDVIL-GRSINGTFFGGWKSVDSVPNLVSDYKNKKFD 343

Query: 237 LHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
           L  L+TH +  E I+ AI L+K+   ++ ++T
Sbjct: 344 LDLLVTHALPFESINDAIDLMKEGKSIRTILT 375

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  274 bits (702), Expect = 2e-91
 Identities = 74/272 (27%), Positives = 119/272 (43%), Gaps = 10/272 (3%)

Query: 2   TNLCLKYPIA-LNGLMLDSTSRMSVRGQKLY--HIFSCSTWSEYMVIDANYVVKVDPSID 58
              C ++     +G   +    +    Q +   H F+ S+++ Y +   N  VKV   + 
Sbjct: 105 PAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVP 164

Query: 59  PSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118
                 L CG  TG GA     KV   SS    G G VGL A+  A++ GA+ II +D  
Sbjct: 165 IELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV 224

Query: 119 PWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTK 178
             + E  K  G T  IN   +        +K IT G GV++  E TG P +L + ++   
Sbjct: 225 ESRLELAKQLGATHVINSKTQD---PVAAIKEITDG-GVNFALESTGSPEILKQGVDALG 280

Query: 179 VGKGKVIVIGVG-VDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKL 237
           +  GK+ V+G   +      +V  L  GG+T+ G   G    K  +P L+   +  +F  
Sbjct: 281 IL-GKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPF 339

Query: 238 HQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI 269
            QL+      +EI++A    ++   +K +I I
Sbjct: 340 DQLVK-FYAFDEINQAAIDSRKGITLKPIIKI 370

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  239 bits (613), Expect = 5e-78
 Identities = 69/259 (26%), Positives = 107/259 (41%), Gaps = 10/259 (3%)

Query: 13  NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVID-ANYVVKVDPSIDPSDASFLSCGFTT 71
             L  +       RG   Y       +S ++V+D    V+KV    D    +   C   T
Sbjct: 124 PYLCPNRKVYGINRGCSEYPHLR-GCYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGAT 182

Query: 72  GYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT 131
            Y A  +  +   G +V + G G +GL  V  AR  GA  +I I  +P + +  +  G  
Sbjct: 183 AYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD 242

Query: 132 DFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-G 190
             +N  +   +   + +  ITHG G D+  E TG    L E  E  + G G   V GV  
Sbjct: 243 LTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAV 301

Query: 191 VDAMVPLNVIALACGGRTLKGTTFGGI--KTKSDLPTLLDKCKNKEFKLHQLLTHHVKLE 248
               VP  V         LK  TF GI     S     +         L +L+TH + L+
Sbjct: 302 PQDPVPFKVYE----WLVLKNATFKGIWVSDTSHFVKTVSITSRNYQLLSKLITHRLPLK 357

Query: 249 EIDKAIQLLKQPDCVKVLI 267
           E +KA++L++  + +KV++
Sbjct: 358 EANKALELMESREALKVIL 376

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score =  152 bits (386), Expect = 2e-44
 Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 15/237 (6%)

Query: 41  EYM-VIDANY-VVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGL 98
           E+  V DA+  +  +   I    A  +    TTG+  A + A ++ G +V V+G+G VGL
Sbjct: 122 EFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGL 180

Query: 99  GAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVD 158
            +V GA   GA +I  +       +    +G TD IN  +     I E +   T G GVD
Sbjct: 181 MSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNG---DIVEQILKATDGKGVD 237

Query: 159 YCFECTGVPSLLSEALETTKVGKGKVIVIGV---GVDAMVPLNVIALACGGRTLKGTTFG 215
                 G     ++A++  K G   +  +     G +  +P +   +  G + + G    
Sbjct: 238 KVVIAGGDVHTFAQAVKMIKPG-SDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCP 296

Query: 216 GIKTKSDLPTLLDKCKNKEFKLHQLLTHHVK-LEEIDKAIQLL--KQPDCVKVLITI 269
           G   +  +  L+D    K     +L+TH  +  + I+KA  L+  K  D +K ++ +
Sbjct: 297 G--GRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVIL 351

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  147 bits (373), Expect = 3e-42
 Identities = 52/235 (22%), Positives = 96/235 (40%), Gaps = 19/235 (8%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASF---LSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTV 96
           +EY+++      ++  ++DP   +F   L+C            + ++ GS+VA+LG G +
Sbjct: 140 AEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCL-----HGVDLSGIKAGSTVAILGGGVI 194

Query: 97  GLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGIT--HG 154
           GL  V  AR+ GA  +I   +   K+   +  G T  ++P       + E + G      
Sbjct: 195 GLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAG---DVVEAIAGPVGLVP 251

Query: 155 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV-DAMVPLNVIALACGGRTLKGTT 213
            GVD   EC GV   + ++    K G G V+++GV      V +    +      + G +
Sbjct: 252 GGVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGEKVEIEPFDILFRELRVLG-S 309

Query: 214 FGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLIT 268
           F             D       ++ ++++  + L+E    I        VKVL+ 
Sbjct: 310 FIN---PFVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLVI 361

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  146 bits (371), Expect = 3e-42
 Identities = 45/223 (20%), Positives = 94/223 (42%), Gaps = 13/223 (5%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSC-GFTTGYGAAWKEAKVEKGSSVAVLGLGTV 96
           + +EYM++D+   +     +DP  A+ L+  G T  +  +     +  GS+  V+G+G +
Sbjct: 124 SMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGL 183

Query: 97  GLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG 156
           G   +   R   AA++I +D +  +    +  G    +          ++ ++ +T G G
Sbjct: 184 GHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGA----ADAIRELTGGQG 239

Query: 157 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGG 216
               F+  G  S +  A +   V  G + V+G+   A        +   G ++    +G 
Sbjct: 240 ATAVFDFVGAQSTIDTAQQVVAVD-GHISVVGIHAGAH-AKVGFFMIPFGASVVTPYWG- 296

Query: 217 IKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 259
             T+S+L  ++   +     +H   T    L+E   A + L++
Sbjct: 297 --TRSELMEVVALARAGRLDIH---TETFTLDEGPAAYRRLRE 334

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  146 bits (370), Expect = 5e-42
 Identities = 45/238 (18%), Positives = 90/238 (37%), Gaps = 17/238 (7%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASF---LSCGFTTGYGAAWKEAKVEKGSSVAVLGLG 94
            ++EY+V+    V  +   +   D +F   ++ G       A+  A+  +  +V ++G G
Sbjct: 116 GFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGL-----HAFHLAQGCENKNVIIIGAG 170

Query: 95  TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHG 154
           T+GL A+  A   GA  +  ID +  K    K+FG     N  +    S  ++   +   
Sbjct: 171 TIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEM---SAPQMQSVLREL 227

Query: 155 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD--AMVPLNVIALACGGRTLKGT 212
                  E  GVP  +  A+E       ++ ++G       +       +     T+ G+
Sbjct: 228 RFNQLILETAGVPQTVELAVEIAGPH-AQLALVGTLHQDLHLTSATFGKILRKELTVIGS 286

Query: 213 --TFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLL-KQPDCVKVLI 267
              +       +  T       ++  L  L+ H    E   +A++ + +     KVL+
Sbjct: 287 WMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLL 344

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  140 bits (356), Expect = 1e-39
 Identities = 54/243 (22%), Positives = 94/243 (38%), Gaps = 23/243 (9%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASF----------LSCGFTTGYGAAWKEAKVEKGSSVA 89
           +EY+ +DA Y   +       +              S  +        +   +  G +V 
Sbjct: 162 AEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAY---NAVIVRGGGIRPGDNVV 218

Query: 90  VLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVK 149
           +LG G +GL AV   +  GA+K+I  + +  ++   K  G    I+P  E   +  E V 
Sbjct: 219 ILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKE---NFVEAVL 275

Query: 150 GITHGMGVDYCFECTGVPSLLSEALETTKVGK--GKVIVIGVGV-DAMVPLNVIALACGG 206
             T+G+G     E TGVP L+   +E            V  V   DA +PL         
Sbjct: 276 DYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRR 335

Query: 207 RTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ-PDCVKV 265
             + G+   G       P ++    +    + ++++  V +EEI + I+ L+     VKV
Sbjct: 336 AQIVGSQ--GHSGHGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQTDKSLVKV 392

Query: 266 LIT 268
            + 
Sbjct: 393 TML 395

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  139 bits (352), Expect = 2e-39
 Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 18/235 (7%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASF---LSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTV 96
           +EY V+ A  + K   SI P  A+    L              A    G SV + G G +
Sbjct: 126 AEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAV---DTV---LAGPISGKSVLITGAGPL 179

Query: 97  GLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG 156
           GL  +  A+  GA  +I  + + +++E  K  G    INP +E    + + V  IT G G
Sbjct: 180 GLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEE---DVVKEVMDITDGNG 236

Query: 157 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV-DAMVPLNVIALACGGRTLKGTTFG 215
           VD   E +G P  L + L+      G+V ++G+      +  N + +     T+ G T  
Sbjct: 237 VDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGLYPGKVTIDFNNLIIF-KALTIYGIT-- 292

Query: 216 GIKTKSDLPTLLDKCKNKEFKLHQLLTHHVK-LEEIDKAIQLLKQPDCVKVLITI 269
           G        T+    ++ +  L  ++TH  K  ++ ++A +L++     KV+  +
Sbjct: 293 GRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRAGKTGKVVFML 347

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  138 bits (351), Expect = 2e-39
 Identities = 53/231 (22%), Positives = 87/231 (37%), Gaps = 16/231 (6%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASF---LSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTV 96
           +EY+V+ A         +    A+                        G SV + G G +
Sbjct: 122 AEYVVVPAENAWVNPKDLPFEVAAILEPFGNAV-----HTVYAGSGVSGKSVLITGAGPI 176

Query: 97  GLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG 156
           GL A    R  GA  I+  D NP++    + +     +NP +E    + E+V+ +T G G
Sbjct: 177 GLMAAMVVRASGAGPILVSDPNPYRLAFARPYA-DRLVNPLEE---DLLEVVRRVT-GSG 231

Query: 157 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGG 216
           V+   E +G  + + + L     G G+  ++G+  D +       L   G T  G    G
Sbjct: 232 VEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPSDPIRFDLAGELVMRGITAFGIA--G 288

Query: 217 IKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
            +             +    L  LLTH + L    +A  LL     VKV++
Sbjct: 289 RRLWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQAVKVIL 339

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  136 bits (345), Expect = 2e-38
 Identities = 49/235 (20%), Positives = 100/235 (42%), Gaps = 19/235 (8%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASF---LSCGFTTGYGAAWKEAKVEKGSSVAVLGLG 94
               +   +A +  K+  ++   + +    LS G       A +   V  G  V V G G
Sbjct: 127 NLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSVGI-----HACRRGGVTLGHKVLVCGAG 181

Query: 95  TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHG 154
            +G+  +  A+  GAA+++  D +  +  K K  G    +    E   S  E+ + +   
Sbjct: 182 PIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKE---SPQEIARKVEGQ 238

Query: 155 MG--VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGT 212
           +G   +   ECTG  + +   +  T+ G G ++++G+G + M  + ++  A     +KG 
Sbjct: 239 LGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGSE-MTTVPLLHAAIREVDIKG- 295

Query: 213 TFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
            F      +  P  +    +K   +  L+TH   LE+  +A +  K+   +K+++
Sbjct: 296 VFRY---CNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIML 347

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  135 bits (341), Expect = 1e-37
 Identities = 44/226 (19%), Positives = 93/226 (41%), Gaps = 17/226 (7%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPS---DASFLSCGFTTGYGAAWK-EAKVEKGSSVAVLGL 93
            ++E+M      V+K+   I      + + L+    T Y A  K    +  G+ VA++G+
Sbjct: 136 GFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGV 195

Query: 94  GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITH 153
           G +G  AV   ++   A +I +D    K +  +  G    ++   +P     + V  +T 
Sbjct: 196 GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDP----VKQVMELTR 251

Query: 154 GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTT 213
           G GV+   +  G  + +           G++I++G G    +    I +     + +G+ 
Sbjct: 252 GRGVNVAMDFVGSQATVDYTPYLLGRM-GRLIIVGYG--GELRFPTIRVISSEVSFEGSL 308

Query: 214 FGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 259
            G      +L  L+      + ++        KL+EI+  ++ L++
Sbjct: 309 VG---NYVELHELVTLALQGKVRVE---VDIHKLDEINDVLERLEK 348

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  130 bits (328), Expect = 9e-36
 Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 28/241 (11%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASF---LSCGFTTGYGAAWKEAKVEKGSSVAVLGLG 94
               Y+   A +  K+  ++   + +    LS        A  + A V  G  V + G G
Sbjct: 136 LLRRYVNHPAVWCHKI-GNMSYENGAMLEPLSVAL-----AGLQRAGVRLGDPVLICGAG 189

Query: 95  TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPN-KSISELVKGITH 153
            +GL  +  A+  GA  ++  D +  + +  K        +  +  + +  ++ +     
Sbjct: 190 PIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFG 249

Query: 154 GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGT- 212
           G+      ECTGV S ++ A+   K G GKV VIGVG +  + +  +  +     L+   
Sbjct: 250 GIEPAVALECTGVESSIAAAIWAVKFG-GKVFVIGVGKN-EIQIPFMRASVREVDLQFQY 307

Query: 213 ----TFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLK--QPDCVKVL 266
               T+         P  +   +N    L +L+TH   LE+  KA +     +   +KV 
Sbjct: 308 RYCNTW---------PRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQ 358

Query: 267 I 267
           I
Sbjct: 359 I 359

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  126 bits (320), Expect = 8e-35
 Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 12/223 (5%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG-LGTV 96
            ++EY+++     +     ++  +A+ L+C   T Y A  ++A ++   ++ V+G  G +
Sbjct: 125 AYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGL 183

Query: 97  GLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG 156
           G  AV  A+    A IIG+D      E  K  G    IN   +        ++ IT   G
Sbjct: 184 GTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQ---DPLAEIRRITESKG 240

Query: 157 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGG 216
           VD   +       LS   +      GK +++G+   A +  +   +        G+  G 
Sbjct: 241 VDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLF-GADLHYHAPLITLSEIQFVGSLVG- 297

Query: 217 IKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 259
              +SD   ++     +  K+  ++T  +KLEE ++AI  L+ 
Sbjct: 298 --NQSDFLGIMRLA--EAGKVKPMITKTMKLEEANEAIDNLEN 336

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  123 bits (310), Expect = 3e-33
 Identities = 44/226 (19%), Positives = 90/226 (39%), Gaps = 17/226 (7%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGA---AWKEAKVEKGSSVAVLGLG 94
            +SEYM++ ++  +    S+ P +A+ L+   TT  GA   A           V V G+G
Sbjct: 121 GFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVNGIG 180

Query: 95  TVGLGAVDGAR-MHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITH 153
            + +  +   + +     I+GI ++   ++     G        D        L+  +T 
Sbjct: 181 GLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKD-----AESLINKLTD 235

Query: 154 GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTT 213
           G+G     +  G         +      G +I++G+    +  L     A   + L G+ 
Sbjct: 236 GLGASIAIDLVGTEETTYNLGKLLAQE-GAIILVGMEGKRV-SLEAFDTAVWNKKLLGSN 293

Query: 214 FGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 259
           +G   + +DL  ++   ++ + K +      V L++I+KA   L +
Sbjct: 294 YG---SLNDLEDVVRLSESGKIKPY---IIKVPLDDINKAFTNLDE 333

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  122 bits (308), Expect = 6e-33
 Identities = 54/239 (22%), Positives = 110/239 (46%), Gaps = 20/239 (8%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASF---LSCGFTTGYGAAWKEAKVEKGSSVAVLGLG 94
             + Y V  A++  K+  ++   + +    LS G       A + A V+ G++V V+G G
Sbjct: 124 NLARYYVHAADFCHKLPDNVSLEEGALLEPLSVGV-----HACRRAGVQLGTTVLVIGAG 178

Query: 95  TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHG 154
            +GL +V  A+ +G A ++   ++P + E  K  G    +  D    +  S +++ I   
Sbjct: 179 PIGLVSVLAAKAYG-AFVVCTARSPRRLEVAKNCGADVTLVVDP-AKEEESSIIERIRSA 236

Query: 155 MG--VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGT 212
           +G   +   +C+G    ++  +  T+ G G ++++G+G   MV + ++        +K  
Sbjct: 237 IGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGSQ-MVTVPLVNACAREIDIKSV 294

Query: 213 TFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLL--KQPDCVKVLITI 269
                +  +D P  L+   +    + QL+TH  KLE+   A +    K  + +KV+I+ 
Sbjct: 295 ----FRYCNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISC 349

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score =  118 bits (299), Expect = 2e-31
 Identities = 42/241 (17%), Positives = 74/241 (30%), Gaps = 30/241 (12%)

Query: 53  VDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKI 112
                   D + +S    TG+      A V+ GS V + G G VG  A  GAR+ GAA +
Sbjct: 155 EQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACV 213

Query: 113 IGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP----- 167
           I  D+NP + +     G       +  P   + + +  I     VD   +  G       
Sbjct: 214 IVGDQNPERLKLLSDAGFETIDLRNSAP---LRDQIDQILGKPEVDCGVDAVGFEAHGLG 270

Query: 168 ---------SLLSEALETTKVGKGKVIVIGV-------GVDAMVPLNVIALACGGRTLKG 211
                      L+   +  + G G + + G+        V+       + L  G    K 
Sbjct: 271 DEANTETPNGALNSLFDVVRAG-GAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKS 329

Query: 212 TTFGGIKT--KSDLPTLLDKCKNKEFKLH--QLLTHHVKLEEIDKAIQLLKQPDCVKVLI 267
                      +    L +     +       +    + L++         +    K +I
Sbjct: 330 IRIMTGMAPVTNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDKGSPAKFVI 389

Query: 268 T 268
            
Sbjct: 390 D 390

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score =  116 bits (293), Expect = 2e-30
 Identities = 53/241 (21%), Positives = 86/241 (35%), Gaps = 30/241 (12%)

Query: 53  VDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKI 112
                   D + LS    TGY  A   A V  GS+V V G G VGL A   AR+ GAA +
Sbjct: 155 DKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVV 213

Query: 113 IGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP----- 167
           I  D NP +    KA G        D P   + E +  +     VD   +  G       
Sbjct: 214 IVGDLNPARLAHAKAQGFEIADLSLDTP---LHEQIAALLGEPEVDCAVDAVGFEARGHG 270

Query: 168 ----------SLLSEALETTKVGKGKVIVIGV-------GVDAMVPLNVIALACGGRTLK 210
                     ++L+  ++ T+V  GK+ + G+        VDA   +  +++  G    K
Sbjct: 271 HEGAKHEAPATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAK 329

Query: 211 GTTFGG--IKTKSDLPTLLDKCKNKEFKLHQLL-THHVKLEEIDKAIQLLKQPDCVKVLI 267
             +F             L+         + +++    + L++  +           K +I
Sbjct: 330 SHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGVPKKFVI 389

Query: 268 T 268
            
Sbjct: 390 D 390

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  114 bits (286), Expect = 1e-29
 Identities = 39/252 (15%), Positives = 75/252 (29%), Gaps = 31/252 (12%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASF--LSCG---------FTTGYGAAWKEAKVEKGS 86
              E+   D  Y+VK+  SI+        L+                     +       
Sbjct: 123 FMREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCR 182

Query: 87  SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISE 146
            V V+G G +G+      R +G    +   + P + E+                   + +
Sbjct: 183 KVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKD 242

Query: 147 LVKGITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA-- 203
            V         D   + TG   ++L   +       G + + G      VPL+   L   
Sbjct: 243 SVG------KFDVIIDATGADVNILGNVIPLLGRN-GVLGLFGFSTSGSVPLDYKTLQEI 295

Query: 204 -CGGRTLKGTTFGGIKTKSDLPTLLD----KCKNKEFKLHQLLTHHVKLEEIDKAIQLL- 257
               +T+ G   G    K      +                L+T  V + +  + +++L 
Sbjct: 296 VHTNKTIIGLVNG---QKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLR 352

Query: 258 -KQPDCVKVLIT 268
            K+   +K+ I 
Sbjct: 353 EKEHGEIKIRIL 364

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  113 bits (285), Expect = 1e-29
 Identities = 41/248 (16%), Positives = 88/248 (35%), Gaps = 36/248 (14%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASF---LSCGFTTGYGAAWKEAKVEK------GSSVAV 90
           SE+      Y+V++  S           +S         A + A   +       SS  V
Sbjct: 125 SEFFTSPEKYLVRIPRSQAE-LGFLIEPISITE-----KALEHAYASRSAFDWDPSSAFV 178

Query: 91  LGLGTVGLGAVDGARMH--GAAKIIGI---DKNPWKKEKGKAFGMTDFINPDDEPNKSIS 145
           LG G++GL  +   ++   G   +  +   D+     +  +    T +++    P + + 
Sbjct: 179 LGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDAT-YVDSRQTPVEDVP 237

Query: 146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIA---- 201
           ++ +       +D+ +E TG P    ++++      G   ++GV  D    ++  A    
Sbjct: 238 DVYEQ------MDFIYEATGFPKHAIQSVQALAPN-GVGALLGVPSDWAFEVDAGAFHRE 290

Query: 202 LACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD 261
           +    + L G+    ++        +   K  ++ L  L+T    L E + A        
Sbjct: 291 MVLHNKALVGSVNSHVEH--FEAATVTFTKLPKWFLEDLVTGVHPLSEFEAAFD--DDDT 346

Query: 262 CVKVLITI 269
            +K  I  
Sbjct: 347 TIKTAIEF 354

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score = 97.2 bits (243), Expect = 9e-24
 Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 17/227 (7%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSC-GFTTGYGAAWKEAKVEKGSSVAVLGLGTV 96
           ++ +Y   DA     +    D +  + + C G T  Y  A K A +  G  VA+ G    
Sbjct: 124 SFQQYATADAVQAAHIPQGTDLAQVAPILCAGITV-Y-KALKSANLMAGHWVAISGAAG- 180

Query: 97  GLG--AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHG 154
           GLG  AV  A+  G  +++GID    K+E  ++ G   FI+   E +  I   V   T G
Sbjct: 181 GLGSLAVQYAKAMG-YRVLGIDGGEGKEELFRSIGGEVFIDFTKEKD--IVGAVLKATDG 237

Query: 155 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTF 214
            G       +   + +  +    +   G  +++G+   A    +V        ++ G+  
Sbjct: 238 -GAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYV 295

Query: 215 GGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD 261
           G      D    LD       K        V L  + +  + +++  
Sbjct: 296 GNRA---DTREALDFFARGLVKSP---IKVVGLSTLPEIYEKMEKGQ 336

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score = 93.4 bits (233), Expect = 2e-22
 Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 19/224 (8%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVG 97
            + EY+V D NYV  +   +   + + + C   T Y    K      G  V + G+G  G
Sbjct: 121 GYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVY-KGLKVTDTRPGQWVVISGIG--G 177

Query: 98  LG--AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGM 155
           LG  AV  AR  G  ++  +D +  K    +  G    +N  D      +  ++    G 
Sbjct: 178 LGHVAVQYARAMG-LRVAAVDIDDAKLNLARRLGAEVAVNARDTD---PAAWLQKEIGGA 233

Query: 156 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFG 215
                      P   S+A+   + G G + + G+         +  +   G T++G+  G
Sbjct: 234 --HGVLVTAVSPKAFSQAIGMVRRG-GTIALNGLPPGDF-GTPIFDVVLKGITIRGSIVG 289

Query: 216 GIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 259
                 DL   LD   + + K         KL++++     L++
Sbjct: 290 TRS---DLQESLDFAAHGDVKAT---VSTAKLDDVNDVFGRLRE 327

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 91.9 bits (229), Expect = 9e-22
 Identities = 41/247 (16%), Positives = 77/247 (31%), Gaps = 25/247 (10%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTV 96
           TW    V     +++V   I    A+ L     T Y       +++ G SV        V
Sbjct: 121 TWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGV 180

Query: 97  GLGAVDGARMHGAAKIIGI----DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGIT 152
           G   +  A   G  + I +           ++ K+ G    I  ++       E+     
Sbjct: 181 GQAVIQIAAALG-LRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRP---EMKNFFK 236

Query: 153 HGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV--GVDAMVPLNVIALACGGRTLK 210
                     C G  S  +E L     G G ++  G       +  ++++        L+
Sbjct: 237 DMPQPRLALNCVGGKS-STELLRQLARG-GTMVTYGGMAKQPVVASVSLLIF--KDLKLR 292

Query: 211 GTTFGGIKTKSD-------LPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCV 263
           G      K           + TL D  +  +          V L++   A++   +P   
Sbjct: 293 GFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAP--ACSQVPLQDYQSALEASMKPFIS 350

Query: 264 -KVLITI 269
            K ++T+
Sbjct: 351 SKQILTM 357

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score = 88.4 bits (220), Expect = 1e-20
 Identities = 55/225 (24%), Positives = 92/225 (40%), Gaps = 21/225 (9%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSC-GFTTGYGAAWKEAKVEKGSSVAVLGLGTV 96
            ++EY    A+YVVK+  ++   +A+ + C G TT Y  A K    + G  VA+ G+G  
Sbjct: 119 GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTT-Y-KALKVTGAKPGEWVAIYGIG-- 174

Query: 97  GLG--AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHG 154
           GLG  AV  A+  G   ++ +D    K E  K  G    +NP  E     ++ +K     
Sbjct: 175 GLGHVAVQYAKAMG-LNVVAVDIGDEKLELAKELGADLVVNPLKED---AAKFMKEKVG- 229

Query: 155 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTF 214
            GV               A  + + G G  +++G+  + M P+ +      G  + G+  
Sbjct: 230 -GVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPPEEM-PIPIFDTVLNGIKIIGSIV 286

Query: 215 GGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 259
           G  K   DL   L      + K          LE+I++    + +
Sbjct: 287 GTRK---DLQEALQFAAEGKVKTI---IEVQPLEKINEVFDRMLK 325

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 81.8 bits (202), Expect = 6e-18
 Identities = 43/237 (18%), Positives = 89/237 (37%), Gaps = 25/237 (10%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGA--AWKEAKVEKGSSVAVLGL-GTV 96
           +E  ++ +N ++     +   +A+      +T Y    +   A +++G +V + G  G +
Sbjct: 182 AEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGL 241

Query: 97  GLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFIN--------------PDDEPNK 142
           G  A   A   G A  I +  +P K E  +A G    I+               D +  K
Sbjct: 242 GSYATQFALAGG-ANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWK 300

Query: 143 SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIAL 202
              + ++ +T G  +D  FE  G       ++  T+ G G +         M   +   L
Sbjct: 301 RFGKRIRELTGGEDIDIVFEHPG-RETFGASVFVTRKG-GTITTCASTSGYMHEYDNRYL 358

Query: 203 ACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 259
               + + G+ F   +   +   L+      + ++H  L+    LE+  +A   + +
Sbjct: 359 WMSLKRIIGSHFANYREAWEANRLIA-----KGRIHPTLSKVYSLEDTGQAAYDVHR 410

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 81.1 bits (201), Expect = 6e-18
 Identities = 57/222 (25%), Positives = 97/222 (43%), Gaps = 15/222 (6%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLG 99
           SEY+V+   + V    S+D ++AS L C   T + A  ++  +  G  V V G G V L 
Sbjct: 145 SEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALF 204

Query: 100 AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 159
            +  A+  G A++I    +  K ++  A G    IN  +E      E V  +T   G D+
Sbjct: 205 GLQIAKATG-AEVIVTSSSREKLDRAFALGADHGINRLEE---DWVERVYALTGDRGADH 260

Query: 160 CFECTGVPSLLSEALETTKVGKGKVIVIGV--GVDAMVPLNVIALACGGRTLKGTTFGGI 217
             E  G  + L ++L+      G++ VIGV  G +   P+  + L      ++G + G  
Sbjct: 261 ILEIAG-GAGLGQSLKAVAPD-GRISVIGVLEGFEVSGPVGPLLL--KSPVVQGISVGHR 316

Query: 218 KTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ 259
           +   DL   +D        L  ++    K  E+ +A+  L +
Sbjct: 317 RALEDLVGAVD-----RLGLKPVIDMRYKFTEVPEALAHLDR 353

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 80.3 bits (199), Expect = 1e-17
 Identities = 47/231 (20%), Positives = 94/231 (40%), Gaps = 13/231 (5%)

Query: 41  EYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG-LGTVGLG 99
           EY+V+    +     ++   +A+ +   F T +     +  V  G  V V+     V + 
Sbjct: 123 EYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVA 182

Query: 100 AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 159
           A+  A++ G A++I    +  K  + KA G  + +N          + V+ +T G G D 
Sbjct: 183 AIQIAKLFG-ARVIATAGSEDKLRRAKALGADETVNYTHP---DWPKEVRRLTGGKGADK 238

Query: 160 CFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT 219
             + TG        ++ T  G G++ + G        L    +     ++ G+T     +
Sbjct: 239 VVDHTG-ALYFEGVIKATANG-GRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMA---S 293

Query: 220 KSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCV-KVLITI 269
           KS L  +L   +    KL  ++   + LE   +  +LL++     KV++ +
Sbjct: 294 KSRLFPILRFVEEG--KLKPVVGQVLPLEAAAEGHRLLEERRVFGKVVLQV 342

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 78.7 bits (194), Expect = 7e-17
 Identities = 38/250 (15%), Positives = 84/250 (33%), Gaps = 26/250 (10%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGA--AWKEAKVEKGSSVAVLGL-G 94
             +EY V+ A+ ++     +   +A+       T Y    + + A++++G  V + G  G
Sbjct: 172 GLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASG 231

Query: 95  TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISEL------- 147
            +G  A+   +  G    + +  +  K+   +A G    IN  +                
Sbjct: 232 GLGSYAIQFVKNGG-GIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVE 290

Query: 148 -------VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVI 200
                  +     G   D  FE TG       ++   + G G V+  G     +   +  
Sbjct: 291 TGRKLAKLVVEKAGREPDIVFEHTG-RVTFGLSVIVARRG-GTVVTCGSSSGYLHTFDNR 348

Query: 201 ALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP 260
            L    + + G+         +        ++    +   ++    L E  +A ++++  
Sbjct: 349 YLWMKLKKIVGSHGA---NHEEQQATNRLFESG--AVVPAMSAVYPLAEAAEACRVVQTS 403

Query: 261 DCV-KVLITI 269
             V KV +  
Sbjct: 404 RQVGKVAVLC 413

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 69.9 bits (172), Expect = 6e-14
 Identities = 36/183 (19%), Positives = 71/183 (38%), Gaps = 17/183 (9%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLG 99
           + Y+ +  ++VV +  +I    A+ L CG  T Y +         G  V ++GLG  G+G
Sbjct: 136 ANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVY-SPLVRNGCGPGKKVGIVGLG--GIG 192

Query: 100 --AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGV 157
                 ++  G A+   I ++  K+E     G   +I   +E +           +    
Sbjct: 193 SMGTLISKAMG-AETYVISRSSRKREDAMKMGADHYIATLEEGDWGEK-------YFDTF 244

Query: 158 DYCFECTGVPSLLSEA--LETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFG 215
           D    C    + +      +  KVG G+++ I +  +    L++        ++  +  G
Sbjct: 245 DLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISI-PEQHEMLSLKPYGLKAVSISYSALG 302

Query: 216 GIK 218
            IK
Sbjct: 303 SIK 305

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 69.5 bits (171), Expect = 7e-14
 Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 18/241 (7%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG-LGTV 96
           TW EY+   A++VV +  SID   A+ +     T +    +   +++   + V      +
Sbjct: 98  TWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAI 157

Query: 97  GLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG 156
           G      +++    ++I + +N    E+    G    I+    P   + E V  +T+G+G
Sbjct: 158 GHLFAQLSQILN-FRLIAVTRNNKHTEELLRLGAAYVIDTSTAP---LYETVMELTNGIG 213

Query: 157 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGG 216
            D   +  G P   +E   + +   G  + IG+     V    I                
Sbjct: 214 ADAAIDSIGGPD-GNELAFSLRPN-GHFLTIGLLSGIQVNWAEIVTK-AKVHANIFHLRH 270

Query: 217 IKTKSDLPTLLDKCKNKEF------KLHQLLTHHV-KLEEIDKAIQLLKQPDCV--KVLI 267
              +   P    +            +L  +  H   +L ++  A+ +++  +    KV +
Sbjct: 271 WNDEVS-PYKWQETFRHLIRLVENEQLRFMKVHSTYELADVKAAVDVVQSAEKTKGKVFL 329

Query: 268 T 268
           T
Sbjct: 330 T 330

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 69.2 bits (170), Expect = 9e-14
 Identities = 39/182 (21%), Positives = 69/182 (37%), Gaps = 16/182 (8%)

Query: 40  SEYMVIDANYVVKVDPSIDPSD-ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGL 98
           S+ +V+   YV+++    +     + L C   T Y +  +  +   G  V V+G+G  GL
Sbjct: 150 SQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTY-SPLRHWQAGPGKKVGVVGIG--GL 206

Query: 99  G--AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG 156
           G   +  A   GA  ++    +  K+E  KA G  + +N  +       + +    H   
Sbjct: 207 GHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNSRNA------DEMA--AHLKS 257

Query: 157 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGG 216
            D+       P  L +     K   G + ++G          V  L    R + G+  GG
Sbjct: 258 FDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGG 316

Query: 217 IK 218
           I 
Sbjct: 317 IP 318

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 34/262 (12%), Positives = 68/262 (25%), Gaps = 38/262 (14%)

Query: 38  TWSEYMVIDANYVVKVD-----------PSIDPSDASFLSCGFTTGYGAAWKEAKVEKGS 86
           TW  + + + +  +K+              +  +  + +S    T Y       K+  G 
Sbjct: 109 TWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGK 168

Query: 87  SVAVL--GLGTVGLGAVDGARMHGAAKIIGI----DKNPWKKEKGKAFGMTDFINPDDEP 140
              +   G   VG  A    ++      I +              K  G T  I  D   
Sbjct: 169 DWFIQNGGTSAVGKYASQIGKLLN-FNSISVIRDRPNLDEVVASLKELGATQVITEDQNN 227

Query: 141 NKSISELVKGIT--HGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV--GVDAMVP 196
           ++     +K      G        C G  S  +          G ++  G        +P
Sbjct: 228 SREFGPTIKEWIKQSGGEAKLALNCVGGKS-STGIARKLNNN-GLMLTYGGMSFQPVTIP 285

Query: 197 LNVIALACGGRTLKGTTFGGIKTKS------DLPTLLDKCKNKEFKLHQLLTHHVKLEEI 250
            ++        T  G     +   +       L  ++   +  +       +     +  
Sbjct: 286 TSLYIF--KNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDA--KSIETLYDGT 341

Query: 251 DKAIQLLKQPDCV----KVLIT 268
               +L +         K LIT
Sbjct: 342 KPLHELYQDGVANSKDGKQLIT 363

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 22/183 (12%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLG 99
           S  +V+D NYV+ VD +      + L C   T Y +  K +KV KG+ V V G G  GLG
Sbjct: 133 SNNIVVDENYVISVDKNAPLEKVAPLLCAGITTY-SPLKFSKVTKGTKVGVAGFG--GLG 189

Query: 100 --AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGV 157
             AV  A   G A++    +N  KK+   + G+  F     +  + +             
Sbjct: 190 SMAVKYAVAMG-AEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEEL------------- 235

Query: 158 DYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIA--LACGGRTLKGTTFG 215
           D+          L + L+      G + ++G+    + P+  +   +  G R + G+  G
Sbjct: 236 DFIISTIPTHYDLKDYLKLLTYN-GDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIG 294

Query: 216 GIK 218
           GIK
Sbjct: 295 GIK 297

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 65.3 bits (160), Expect = 2e-12
 Identities = 50/239 (20%), Positives = 99/239 (41%), Gaps = 20/239 (8%)

Query: 39  WSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG-LGTVG 97
           ++E + +  + ++   P +D ++A  L   + T Y A  +  ++  G +V VLG  G +G
Sbjct: 114 YAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIG 173

Query: 98  LGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGV 157
             A+  A+  G AK+I +       E  K+ G    +  ++      ++ V+  T G GV
Sbjct: 174 TAAIQIAKGMG-AKVIAVVNRTAATEFVKSVGADIVLPLEEG----WAKAVREATGGAGV 228

Query: 158 DYCFECTGVPSLLSEALETTKVGKGKVIVIGV--GVDAMVPLNVIALACGGRTLKGTTFG 215
           D   +  G      +A+ T     G+++V+G   G    + +N + L     +L G  +G
Sbjct: 229 DMVVDPIG-GPAFDDAVRTLASE-GRLLVVGFAAGGIPTIKVNRLLL--RNASLIGVAWG 284

Query: 216 GIKTKSDLPTLLDKCKNKEFKLHQ-----LLTHHVKLEEIDKAIQLLKQPDCV-KVLIT 268
                      L + +    KL        ++  + L E  +A+Q         K+++ 
Sbjct: 285 EFLRTH--ADYLYETQAGLEKLVAEGMRPPVSARIPLSEGRQALQDFADGKVYGKMVLV 341

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 64.5 bits (158), Expect = 3e-12
 Identities = 41/184 (22%), Positives = 76/184 (41%), Gaps = 20/184 (10%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYG--AAWKEAKVEKGSSVAVLGLGTVG 97
           ++  V+   +VVK+   +    A+ L C   T Y   + +   +   G    +LGLG  G
Sbjct: 136 AKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQ--PGLRGGILGLG--G 191

Query: 98  LG--AVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDFINPDDEPNKSISELVKGITHG 154
           +G   V  A+  G   +  I  +  K+E+  +  G  D++   D+        +      
Sbjct: 192 VGHMGVKIAKAMG-HHVTVISSSNKKREEALQDLGADDYVIGSDQ------AKMS--ELA 242

Query: 155 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTF 214
             +DY  +   V   L   L   K+  GK+I++GV ++  +      L  G + + G+  
Sbjct: 243 DSLDYVIDTVPVHHALEPYLSLLKLD-GKLILMGV-INNPLQFLTPLLMLGRKVITGSFI 300

Query: 215 GGIK 218
           G +K
Sbjct: 301 GSMK 304

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 64.1 bits (157), Expect = 5e-12
 Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 18/183 (9%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEK-GSSVAVLGLGTVGL 98
           S +MV +  Y+++   ++     + L C   T Y +  K   +++ G  + ++GLG  GL
Sbjct: 143 SNHMVANERYIIRFPDNMPLDGGAPLLCAGITVY-SPLKYFGLDEPGKHIGIVGLG--GL 199

Query: 99  G--AVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDFINPDDEPNKSISELVKGITHGM 155
           G  AV  A+  G +K+  I  +P KKE+  K FG   F+   D+      E ++      
Sbjct: 200 GHVAVKFAKAFG-SKVTVISTSPSKKEEALKNFGADSFLVSRDQ------EQMQ--AAAG 250

Query: 156 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFG 215
            +D   +       L       K   GK+I++G   +  + L   +L  G + + G+  G
Sbjct: 251 TLDGIIDTVSAVHPLLPLFGLLKSH-GKLILVGA-PEKPLELPAFSLIAGRKIVAGSGIG 308

Query: 216 GIK 218
           G+K
Sbjct: 309 GMK 311

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 25/180 (13%), Positives = 53/180 (29%), Gaps = 9/180 (5%)

Query: 38  TWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG-LGTV 96
           +W+EY V +A   + +  ++   D + +     T   A +   K E   +  +      +
Sbjct: 119 SWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAI-AMFDIVKQEGEKAFVMTAGASQL 177

Query: 97  GLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG 156
               +  A+  G  + I   +   +    K  G    +N            ++ +     
Sbjct: 178 CKLIIGLAKEEG-FRPIVTVRRDEQIALLKDIGAAHVLNEKAPD---FEATLREVMKAEQ 233

Query: 157 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGV-GVDAMVPLNVIALACGGRTLKGTTFG 215
                +      L S           + I+ G    DA V      L    + ++G    
Sbjct: 234 PRIFLDAVT-GPLASAIFNAMPKR-ARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWLS 291

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 59.6 bits (144), Expect = 2e-10
 Identities = 28/164 (17%), Positives = 52/164 (31%), Gaps = 14/164 (8%)

Query: 27  GQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD-ASFLSCGFTTGYGAAW---KEAKV 82
             K       + +S+Y  I A+  + +     P+D AS      T     A    +  ++
Sbjct: 115 MGKTVAAIGGAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLT-----ALGMVETMRL 169

Query: 83  EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPN 141
           E  S++        +G          G  K++ I +   + +  KA G     N      
Sbjct: 170 EGHSALVHTAAASNLGQMLNQICLKDG-IKLVNIVRKQEQADLLKAQGAVHVCNAASP-- 226

Query: 142 KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVI 185
            +  + +       G    F+ TG   L  + L   +    K  
Sbjct: 227 -TFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSA 269

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 27/238 (11%)

Query: 41  EYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG-LGTVGLG 99
           E + +    ++ +   + P +A+     F T Y  A K A+   G  V V    G +G  
Sbjct: 83  ERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAY-LALKRAQARPGEKVLVQAAAGALGTA 141

Query: 100 AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 159
           AV  AR  G  +++     P K     A G  +     +          +      G+D 
Sbjct: 142 AVQVARAMG-LRVLAAASRPEKLALPLALGAEEAATYAEV--------PERAKAWGGLDL 192

Query: 160 CFECTGVPSLLSEALETTKVGKGKVIVIGV--GVDAMVPLNVIALACGGRTLKGTTFGGI 217
             E  G    + E+L     G G+++ IG   G  A +P   +        + G     +
Sbjct: 193 VLEVRG--KEVEESLGLLAHG-GRLVYIGAAEGEVAPIPPLRLMR--RNLAVLGFWLTPL 247

Query: 218 KTKSDLPTLLDKCKNKEFKLHQ-----LLTHHVKLEEIDKAIQLLKQPDCV-KVLITI 269
             +     L+++               ++       E + A + L       KV++ +
Sbjct: 248 LRE---GALVEEALGFLLPRLGRELRPVVGPVFPFAEAEAAFRALLDRGHTGKVVVRL 302

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 47/222 (21%), Positives = 81/222 (36%), Gaps = 15/222 (6%)

Query: 40  SEYMVIDANYVVKVDPSIDPSD-ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVG 97
           S    I A+    +  +I     A+    G T  Y    K  +++           G VG
Sbjct: 96  SSVHNIIADKAAILPAAISFEQAAASFLKGLTVYY-LLRKTYEIKPDEQFLFHAAAGGVG 154

Query: 98  LGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGV 157
           L A   A+  G AK+IG      K +     G    IN  +E    + E +K IT G  V
Sbjct: 155 LIACQWAKALG-AKLIGTVGTAQKAQSALKAGAWQVINYREE---DLVERLKEITGGKKV 210

Query: 158 DYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIAL-ACGGRTLKGTTFGG 216
              ++  G  +    +L+  +  +G ++  G    A+  +N+  L   G   +   +  G
Sbjct: 211 RVVYDSVGRDT-WERSLDCLQR-RGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQG 268

Query: 217 -IKTKSDL----PTLLDKCKNKEFKLHQLLTHHVKLEEIDKA 253
            I T+ +L      L     +   K+         L++  +A
Sbjct: 269 YITTREELTEASNELFSLIASGVIKVDVAEQQKYPLKDAQRA 310

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 9/169 (5%)

Query: 40  SEYMVIDANYVVKVDPSIDPSD-ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVG 97
           SE  V+    +VK+  S+     A+ +  G T  Y    +  +V+ G  +      G VG
Sbjct: 96  SEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQY-LLRQTYQVKPGEIILFHAAAGGVG 154

Query: 98  LGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGV 157
             A   A+  G AK+IG   +P K    KA G  + I+   E    +++ V  +T G   
Sbjct: 155 SLACQWAKALG-AKLIGTVSSPEKAAHAKALGAWETIDYSHE---DVAKRVLELTDGKKC 210

Query: 158 DYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGG 206
              ++  G       +L++    +G V+  G     +  +N+  LA   
Sbjct: 211 PVVYDGVG-QDTWLTSLDSVAP-RGLVVSFGNASGPVSGVNLGILAQKD 257

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 54.5 bits (132), Expect = 7e-09
 Identities = 46/224 (20%), Positives = 73/224 (32%), Gaps = 19/224 (8%)

Query: 44  VIDANYVVKVDPSIDPSD----ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVGL 98
           +     V+K+       +    A+ L    T       +   V+KG  V +    G VGL
Sbjct: 105 ISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALS-FTNEAYHVKKGDYVLLFAAAGGVGL 163

Query: 99  GAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVD 158
                 +M GA   I +     K +  K +G    IN   E    I   V   T+G GVD
Sbjct: 164 ILNQLLKMKGA-HTIAVASTDEKLKIAKEYGAEYLINASKE---DILRQVLKFTNGKGVD 219

Query: 159 YCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGG-I 217
             F+  G       +L   K  KG  +  G     + P ++  L+    TL      G I
Sbjct: 220 ASFDSVG-KDTFEISLAALKR-KGVFVSFGNASGLIPPFSITRLSPKNITLVRPQLYGYI 277

Query: 218 KTKSDL----PTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLL 257
               +             +K+  +   +     L +   A   +
Sbjct: 278 ADPEEWKYYSDEFFGLVNSKKLNIK--IYKTYPLRDYRTAAADI 319

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 44/177 (24%), Positives = 70/177 (39%), Gaps = 11/177 (6%)

Query: 40  SEYMVIDANYVVKVDPSIDPSDASFLSC---GFTTGYGAAWKEAKVEKGSSVAVLGL-GT 95
           S+  +  A  ++KV   +D  D         G T  Y    +  KV+ G  V +    G 
Sbjct: 99  SQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQY-LLHQTHKVKPGDYVLIHAAAGG 157

Query: 96  VGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGM 155
           +G   V  AR  G A +IG      K E  +  G    IN   +     +E+V+ IT G 
Sbjct: 158 MGHIMVPWARHLG-ATVIGTVSTEEKAETARKLGCHHTINYSTQ---DFAEVVREITGGK 213

Query: 156 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGT 212
           GVD  ++  G  + L ++L+  +  +G     G       P+ V+       +L  T
Sbjct: 214 GVDVVYDSIGKDT-LQKSLDCLRP-RGMCAAYGHASGVADPIRVVEDLGVRGSLFIT 268

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 51.8 bits (125), Expect = 6e-08
 Identities = 44/176 (25%), Positives = 68/176 (38%), Gaps = 9/176 (5%)

Query: 41  EYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG-LGTVGLG 99
           EY +   + V K+   +D    + +   + T Y A    A V+ G SV V G  G VGL 
Sbjct: 127 EYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLA 186

Query: 100 AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDY 159
           A   AR +G  KI+G       ++     G  +  N  +       + +K      G+D 
Sbjct: 187 ACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFNHREVN---YIDKIKKYVGEKGIDI 242

Query: 160 CFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFG 215
             E       LS+ L     G G+VIV+G      + +N         ++ G T  
Sbjct: 243 IIEMLA-NVNLSKDLSLLSHG-GRVIVVGSR--GTIEINPRDTMAKESSIIGVTLF 294

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 48/255 (18%), Positives = 89/255 (34%), Gaps = 33/255 (12%)

Query: 39  WSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG-LGTVG 97
           W+E +     +V K+   +  S+A+     F T Y   ++ A + +G SV V    G VG
Sbjct: 97  WAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVG 156

Query: 98  LGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGV 157
                         + G   + +K E  K    T   + + +      + VK I+   GV
Sbjct: 157 QAVAQLCSTVPNVTVFGTA-STFKHEAIKDSV-THLFDRNAD----YVQEVKRIS-AEGV 209

Query: 158 DYCFECTGVPSLLSEALETTKVGKGKVIVIGV----------------GVDAMVPLNVIA 201
           D   +C        + L   K   G  I+ G                     +  +N I 
Sbjct: 210 DIVLDCLCG-DNTGKGLSLLKPL-GTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIK 267

Query: 202 LACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQ------LLTHHVKLEEIDKAIQ 255
           L    + + G +   +  K     L+     K   L+       ++     LEE+ +A+Q
Sbjct: 268 LYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKPVVDSLWALEEVKEAMQ 327

Query: 256 LLKQPDCV-KVLITI 269
            +     + K+++ +
Sbjct: 328 RIHDRGNIGKLILDV 342

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 48.4 bits (116), Expect = 8e-07
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 10/151 (6%)

Query: 39  WSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG-LGTVG 97
           ++EY V+ A+    V         + L  G  T Y +  +   + +G  V V    G  G
Sbjct: 120 FAEYTVVPASIATPVPSVKPEY-LTLLVSGT-TAYISLKELGGLSEGKKVLVTAAAGGTG 177

Query: 98  LGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGV 157
             A+  ++      +IG   +  K    K+ G    IN   EP   +  ++K   +  GV
Sbjct: 178 QFAMQLSKKAK-CHVIGTCSSDEKSAFLKSLGCDRPINYKTEP---VGTVLK-QEYPEGV 232

Query: 158 DYCFECTGVPSLLSEALETTKVGKGKVIVIG 188
           D  +E  G   +   A++     KG++IVIG
Sbjct: 233 DVVYESVGGA-MFDLAVDALAT-KGRLIVIG 261

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 31/176 (17%), Positives = 64/176 (36%), Gaps = 10/176 (5%)

Query: 41  EYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGT--VGL 98
           +Y+ +    ++ +   +  + A+ +   + T +        V+ G  V +   G   VG 
Sbjct: 119 QYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHA-GLSGVGT 177

Query: 99  GAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVD 158
            A+   RM GA   +    +  K +  +  G     N   E     SE     T G GV+
Sbjct: 178 AAIQLTRMAGA-IPLVTAGSQKKLQMAEKLGAAAGFNYKKE---DFSEATLKFTKGAGVN 233

Query: 159 YCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGR-TLKGTT 213
              +C G  S   + +    +  G+ ++ G+     +   + +     R +L  + 
Sbjct: 234 LILDCIG-GSYWEKNVNCLALD-GRWVLYGLMGGGDINGPLFSKLLFKRGSLITSL 287

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 13/129 (10%)

Query: 34  FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVL-G 92
                +    V D   V ++      + A+ +   F T Y A    A +  G S+ V   
Sbjct: 295 MIPKAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSA 354

Query: 93  LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD---FINPDDEPNKSISELVK 149
            G VG+ A+  AR  G A++             +A  ++                 +   
Sbjct: 355 AGGVGMAAIQLARHLG-AEVYATASEDKW----QAVELSREHLA----SSRTCDFEQQFL 405

Query: 150 GITHGMGVD 158
           G T G GVD
Sbjct: 406 GATGGRGVD 414

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 21/121 (17%)

Query: 47  ANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAV-LGLGTVGLGAVDGAR 105
           ++ VV +  ++  ++A+     + T + +  +  ++  G  V +    G VG+ AV  A+
Sbjct: 1   SDLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAK 60

Query: 106 MHGAAKIIGIDKNPWKKEKGKAFGM--------TDFINPDDEPNKSISELVKGITHGMGV 157
           M G A+I     +  K+E     G+         DF           ++ +  +T G GV
Sbjct: 61  MIG-ARIYTTAGSDAKREMLSRLGVEYVGDSRSVDF-----------ADEILELTDGYGV 108

Query: 158 D 158
           D
Sbjct: 109 D 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.96
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.92
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.05
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.98
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.87
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.82
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.78
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.74
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.65
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.51
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.4
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.36
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.32
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.3
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.26
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.19
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.11
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.0
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.99
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.95
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.9
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.87
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.87
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.8
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.76
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.75
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.74
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.74
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.71
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.7
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.69
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.65
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.64
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.62
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.61
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.6
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.58
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.58
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.58
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.54
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	97.5
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.49
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.49
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.48
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.43
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.43
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.41
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.39
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.38
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.37
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.37
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.35
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.32
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	97.31
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	97.29
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.27
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.26
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	97.26
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.26
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.25
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.25
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.24
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.24
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.23
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.22
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.21
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	97.21
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.19
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.19
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.18
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.18
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.18
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.18
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	97.17
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.17
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.17
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.17
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.17
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.16
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.16
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.15
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.15
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	97.14
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.14
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.14
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	97.13
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	97.13
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.12
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.12
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.12
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.11
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.1
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.09
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	97.09
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	97.09
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.08
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.08
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.08
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.06
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.06
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.06
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.06
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.05
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	97.05
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.05
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.05
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.04
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.03
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.03
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.02
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.02
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	97.01
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.01
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.01
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.01
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	97.0
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	96.99
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	96.99
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.98
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	96.98
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	96.98
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.97
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	96.97
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.97
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.97
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.96
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.96
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.96
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.95
4had_A	350	Probable oxidoreductase protein; structural genomi	96.94
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.93
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.93
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.92
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	96.92
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.92
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	96.91
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	96.91
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.91
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.91
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	96.91
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.91
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.9
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.9
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	96.9
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.9
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.9
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.89
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.89
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	96.88
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.88
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	96.88
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.88
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	96.87
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.86
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	96.86
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	96.86
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	96.85
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.85
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.85
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.85
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.85
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	96.84
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	96.84
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	96.83
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.83
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.82
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	96.82
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	96.81
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.81
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.81
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	96.8
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.8
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.8
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.79
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.79
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	96.79
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.79
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.78
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.78
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.78
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.78
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.78
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.78
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.77
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.77
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	96.77
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.77
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.77
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	96.77
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	96.76
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	96.76
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	96.76
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.76
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	96.76
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.75
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	96.74
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.74
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.74
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	96.74
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.74
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.74
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.74
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.74
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	96.73
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	96.73
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	96.73
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	96.73
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.73
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.72
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	96.72
3f4k_A	257	Putative methyltransferase; structural genomics, P	96.71
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.71
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.71
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.7
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	96.7
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	96.7
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	96.7
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	96.7
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.7
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.7
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.69
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.69
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.69
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.69
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.69
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	96.69
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	96.68
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.68
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	96.68
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.67
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	96.67
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.67
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.66
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.66
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.66
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	96.66
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.66
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.66
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.66
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	96.65
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.65
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	96.65
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	96.65
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.65
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	96.65
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.64
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.64
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.64
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.64
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.64
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.63
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	96.63
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.63
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	96.62
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.62
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.62
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	96.61
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.61
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	96.61
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.6
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.6
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.6
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	96.59
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.59
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	96.58
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.58
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.57
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	96.57
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	96.57
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	96.57
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.57
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.57
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.56
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.56
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.56
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	96.56
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.55
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.55
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.55
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.55
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	96.55
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	96.55
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	96.54
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	96.54
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	96.54
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	96.54
2esr_A	177	Methyltransferase; structural genomics, hypothetic	96.54
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	96.53
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.53
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	96.53
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	96.53
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.53
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	96.52
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	96.51
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	96.51
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.51
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	96.51
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.5
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.5
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.49
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	96.49
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.49
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.49
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	96.49
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	96.48
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.48
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.47
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.47
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.46
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.46
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.45
2i7c_A	283	Spermidine synthase; transferase, structural genom	96.45
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.45
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	96.45
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.45
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	96.45
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	96.45
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	96.45
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	96.44
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.44
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	96.44
1xkq_A	280	Short-chain reductase family member (5D234); parra	96.43
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.43
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	96.43
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	96.42
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	96.42
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.42
2o07_A	304	Spermidine synthase; structural genomics, structur	96.42
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.42
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.42
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	96.41
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.41
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.41
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	96.41
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.41
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	96.41
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	96.4
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.4
2pt6_A	321	Spermidine synthase; transferase, structural genom	96.4
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	96.4
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.39
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.39
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	96.38
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.38
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	96.38
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	96.37
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.37
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.37
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.37
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	96.36
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	96.36
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	96.36
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	96.36
3lpm_A	259	Putative methyltransferase; structural genomics, p	96.35
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.35
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.35
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.35
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	96.35
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	96.34
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	96.33
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	96.33
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.32
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.32
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	96.32
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.32
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	96.31
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.31
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	96.31
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	96.3
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.3
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	96.3
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.3
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	96.29
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	96.29
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.29
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.29
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.28
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.28
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.27
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.26
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.26
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	96.25
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	96.25
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	96.25
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	96.24
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.24
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.23
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.23
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	96.23
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.23
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	96.23
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.23
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	96.22
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	96.22
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.22
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	96.21
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	96.21
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	96.21
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	96.2
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	96.2
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.19
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	96.19
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.18
1spx_A	278	Short-chain reductase family member (5L265); paral	96.18
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	96.17
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.17
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.16
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	96.16
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	96.16
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.14
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	96.14
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.14
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.14
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	96.14
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	96.13
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.13
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	96.12
3ege_A	261	Putative methyltransferase from antibiotic biosyn	96.12
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	96.12
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.12
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.11
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	96.11
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	96.11
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.1
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.1
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.1
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.09
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.09
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.09
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.09

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=5e-41  Score=289.19  Aligned_cols=230  Identities=43%  Similarity=0.783  Sum_probs=207.0

Q ss_pred             CcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295           37 STWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID  116 (269)
Q Consensus        37 g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~  116 (269)
                      |+||||++++++.++++|+++++++|+++++++.|||+++.+.++++++++|||+|+|++|++++|+|+..|+++|++++
T Consensus       146 G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~  225 (378)
T 3uko_A          146 STFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGID  225 (378)
T ss_dssp             CCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEEC
T ss_pred             cceEeEEEechhheEECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence            69999999999999999999999999999999999999998899999999999999999999999999999998899999


Q ss_pred             CCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccc
Q 024295          117 KNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMV  195 (269)
Q Consensus       117 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~  195 (269)
                      +++++++.++++|+++++++.+ .+.++.+.+++.+++ ++|++||++|.+..++.+++++++++|+++.+|.... ...
T Consensus       226 ~~~~~~~~a~~lGa~~vi~~~~-~~~~~~~~i~~~~~g-g~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~  303 (378)
T 3uko_A          226 IDSKKYETAKKFGVNEFVNPKD-HDKPIQEVIVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEI  303 (378)
T ss_dssp             SCTTHHHHHHTTTCCEEECGGG-CSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCE
T ss_pred             CCHHHHHHHHHcCCcEEEcccc-CchhHHHHHHHhcCC-CCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCcc
Confidence            9999999999999999999872 127899999999988 9999999999987899999999992299999997653 455


Q ss_pred             cchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          196 PLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      +++...++ +++++.|+.++.+..++++.++++++.+|+++++++++++||++++++||+.+.+++..|+||++
T Consensus       304 ~~~~~~~~-~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~~Kvvi~~  376 (378)
T 3uko_A          304 STRPFQLV-TGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCLRCVLDT  376 (378)
T ss_dssp             EECTHHHH-TTCEEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTCSEEEEET
T ss_pred             ccCHHHHh-cCcEEEEEEecCCCchHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCCceEEEEec
Confidence            66666666 58999998876655557899999999999999999999999999999999999988878999975

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.7e-41  Score=287.74  Aligned_cols=228  Identities=30%  Similarity=0.448  Sum_probs=205.5

Q ss_pred             cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295           36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI  115 (269)
Q Consensus        36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~  115 (269)
                      +|+||||++++++.++++|+++++++|+++++++.|||+++.+.++++++++|||+|+|++|++++|+|+..|+++|+++
T Consensus       142 ~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~  221 (371)
T 1f8f_A          142 QSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAV  221 (371)
T ss_dssp             TCCSBSEEEEEGGGEEEECTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccccCeEEechhheEECCCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            48999999999999999999999999999999999999998888999999999999999999999999999999779999


Q ss_pred             cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-cc
Q 024295          116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AM  194 (269)
Q Consensus       116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~  194 (269)
                      ++++++++.++++|+++++++++   .++.+.+++.+++ ++|++||++|.+..++.++++++++ |+++.+|.... ..
T Consensus       222 ~~~~~~~~~a~~lGa~~vi~~~~---~~~~~~~~~~~~g-g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~  296 (371)
T 1f8f_A          222 DIVESRLELAKQLGATHVINSKT---QDPVAAIKEITDG-GVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTT  296 (371)
T ss_dssp             ESCHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTS-CEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCC
T ss_pred             CCCHHHHHHHHHcCCCEEecCCc---cCHHHHHHHhcCC-CCcEEEECCCCHHHHHHHHHHHhcC-CEEEEeCCCCCCCc
Confidence            99999999999999999999887   7889999998888 9999999999877889999999996 99999997653 34


Q ss_pred             ccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          195 VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      .+++...++.+++++.+++...+..+++++++++++.+|++++.+++++ ||++++++||+.+.+++.+|+||++
T Consensus       297 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~~~~~~Kvvv~~  370 (371)
T 1f8f_A          297 AQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGITLKPIIKI  370 (371)
T ss_dssp             CCCCHHHHHHTTCEEEECSGGGSCHHHHHHHHHHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             cccCHHHHHhCCCEEEEeCCCCCchHHHHHHHHHHHHcCCCCcccceeE-ecHHHHHHHHHHHHCCCceEEEEee
Confidence            5677777778999999987654333467899999999999988888988 9999999999999877778999875

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=3.2e-40  Score=284.02  Aligned_cols=228  Identities=37%  Similarity=0.694  Sum_probs=203.3

Q ss_pred             CcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295           37 STWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID  116 (269)
Q Consensus        37 g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~  116 (269)
                      |+||||++++++.++++|+++++++|+++++++.|||+++.+.++++++++|||+|+|++|++++|+||..|+++|++++
T Consensus       148 G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~  227 (376)
T 1e3i_A          148 SSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAID  227 (376)
T ss_dssp             CCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             ccceeEEEeccccEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence            89999999999999999999999999999999999999988889999999999999999999999999999997899999


Q ss_pred             CCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCC-cEEEEEccCCCccc
Q 024295          117 KNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK-GKVIVIGVGVDAMV  195 (269)
Q Consensus       117 ~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~  195 (269)
                      +++++++.++++|+++++|+++ .++++.+.+++.+++ ++|+|||++|.+..++.+++++++ + |+++.+|... ...
T Consensus       228 ~~~~~~~~a~~lGa~~vi~~~~-~~~~~~~~v~~~~~~-g~Dvvid~~G~~~~~~~~~~~l~~-~~G~iv~~G~~~-~~~  303 (376)
T 1e3i_A          228 INGEKFPKAKALGATDCLNPRE-LDKPVQDVITELTAG-GVDYSLDCAGTAQTLKAAVDCTVL-GWGSCTVVGAKV-DEM  303 (376)
T ss_dssp             SCGGGHHHHHHTTCSEEECGGG-CSSCHHHHHHHHHTS-CBSEEEESSCCHHHHHHHHHTBCT-TTCEEEECCCSS-SEE
T ss_pred             CCHHHHHHHHHhCCcEEEcccc-ccchHHHHHHHHhCC-CccEEEECCCCHHHHHHHHHHhhc-CCCEEEEECCCC-Ccc
Confidence            9999999999999999998762 014688889988887 999999999987788999999999 7 9999999844 455


Q ss_pred             cchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          196 PLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      +++...++.++ ++.++..+.+..+++++++++++.+|+++++++++++||++++++||+.+.+++.+|+||+|
T Consensus       304 ~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvi~~  376 (376)
T 1e3i_A          304 TIPTVDVILGR-SINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKSIRTILTF  376 (376)
T ss_dssp             EEEHHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             ccCHHHhhccC-eEEEEecCCCCcHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCCcceEEEeC
Confidence            67777777788 99998765433346799999999999998888899999999999999999888778999976

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=1e-39  Score=280.52  Aligned_cols=228  Identities=37%  Similarity=0.648  Sum_probs=201.5

Q ss_pred             cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295           36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI  115 (269)
Q Consensus        36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~  115 (269)
                      .|+||||++++++.++++|++++++ ||++++++.|||+++.+.++++++++|||+|+|++|++++|+||..|+++|+++
T Consensus       144 ~G~~aey~~v~~~~~~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~  222 (373)
T 1p0f_A          144 TSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGV  222 (373)
T ss_dssp             TCCSBSEEEEETTSEEEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccceeEEEEchhhEEECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            3899999999999999999999999 999999999999998888999999999999999999999999999999789999


Q ss_pred             cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCC-cEEEEEccCCC-c
Q 024295          116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK-GKVIVIGVGVD-A  193 (269)
Q Consensus       116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~-~  193 (269)
                      ++++++++.++++|+++++++++ .+.++.+.+++.+++ ++|+|||++|.+..+..+++++++ + |+++.+|.... .
T Consensus       223 ~~~~~~~~~a~~lGa~~vi~~~~-~~~~~~~~i~~~t~g-g~Dvvid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~  299 (373)
T 1p0f_A          223 GTHKDKFPKAIELGATECLNPKD-YDKPIYEVICEKTNG-GVDYAVECAGRIETMMNALQSTYC-GSGVTVVLGLASPNE  299 (373)
T ss_dssp             CSCGGGHHHHHHTTCSEEECGGG-CSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECCCCCTTC
T ss_pred             CCCHHHHHHHHHcCCcEEEeccc-ccchHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHHhc-CCCEEEEEccCCCCC
Confidence            99999999999999999998762 014688889998887 999999999987788999999999 7 99999997653 3


Q ss_pred             cccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          194 MVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      ..+++...++.++ ++.|+..+.+.. ++++++++++.+|++++.++++++||++++++||+.+++++.+|+||+|
T Consensus       300 ~~~~~~~~~~~~~-~i~g~~~~~~~~-~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~  373 (373)
T 1p0f_A          300 RLPLDPLLLLTGR-SLKGSVFGGFKG-EEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQGVRSIMIY  373 (373)
T ss_dssp             CEEECTHHHHTTC-EEEECSGGGCCG-GGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTSSCSEEEEEC
T ss_pred             ccccCHHHhccCc-eEEeeccCCcCH-HHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCCCcceEEEeC
Confidence            4556666676677 999987654322 6799999999999998888899999999999999999887778999975

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=7e-40  Score=281.70  Aligned_cols=230  Identities=38%  Similarity=0.668  Sum_probs=203.3

Q ss_pred             cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295           36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI  115 (269)
Q Consensus        36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~  115 (269)
                      +|+||||++++++.++++|+++++++|+++++++.|||+++.+.++++++++|||+|+|++|++++|+|+..|+++|+++
T Consensus       143 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~  222 (374)
T 2jhf_A          143 TSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGV  222 (374)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CccCeeEEEEchHHeEECCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            38999999999999999999999999999999999999998888999999999999999999999999999999789999


Q ss_pred             cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCC-cEEEEEccCCC-c
Q 024295          116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK-GKVIVIGVGVD-A  193 (269)
Q Consensus       116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~-~  193 (269)
                      ++++++++.++++|+++++|+.+ ...++.+.+++.+++ ++|++||++|.+..+..+++++++ + |+++.+|.... .
T Consensus       223 ~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~~~~~~~~~~-g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~  299 (374)
T 2jhf_A          223 DINKDKFAKAKEVGATECVNPQD-YKKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQE-AYGVSVIVGVPPDSQ  299 (374)
T ss_dssp             CSCGGGHHHHHHTTCSEEECGGG-CSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHHBCT-TTCEEEECSCCCTTC
T ss_pred             cCCHHHHHHHHHhCCceEecccc-cchhHHHHHHHHhCC-CCcEEEECCCCHHHHHHHHHHhhc-CCcEEEEeccCCCCC
Confidence            99999999999999999998762 014688888888887 999999999987788999999999 7 99999997653 3


Q ss_pred             cccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          194 MVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      ..+++...++.++ ++.++....+..+++++++++++.+|++++.++++++||++++++||+.+.+++.+|+||+|
T Consensus       300 ~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvi~~  374 (374)
T 2jhf_A          300 NLSMNPMLLLSGR-TWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGESIRTILTF  374 (374)
T ss_dssp             CEEECTHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             ccccCHHHHhcCC-eEEEeccCCCChHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCCcceEEEeC
Confidence            4556666677678 99998765443346799999999999998888899999999999999999888778999976

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.5e-40  Score=281.91  Aligned_cols=230  Identities=41%  Similarity=0.708  Sum_probs=203.4

Q ss_pred             cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295           36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI  115 (269)
Q Consensus        36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~  115 (269)
                      +|+||||++++++.++++|+++++++|+++++++.|||+++.+.++++++++|||+|+|++|++++|+|+..|+++|+++
T Consensus       144 ~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~  223 (374)
T 1cdo_A          144 TSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAV  223 (374)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            38999999999999999999999999999999999999998888999999999999999999999999999999789999


Q ss_pred             cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCC-cEEEEEccCCCcc
Q 024295          116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK-GKVIVIGVGVDAM  194 (269)
Q Consensus       116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~  194 (269)
                      ++++++++.++++|+++++++.+ .+.++.+.+++.+++ ++|++||++|.+..+..+++++++ + |+++.+|......
T Consensus       224 ~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~~~~~~~~~~-g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~  300 (374)
T 1cdo_A          224 DLNPDKFEKAKVFGATDFVNPND-HSEPISQVLSKMTNG-GVDFSLECVGNVGVMRNALESCLK-GWGVSVLVGWTDLHD  300 (374)
T ss_dssp             CSCGGGHHHHHHTTCCEEECGGG-CSSCHHHHHHHHHTS-CBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECSCCSSSC
T ss_pred             cCCHHHHHHHHHhCCceEEeccc-cchhHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHhhc-CCcEEEEEcCCCCCC
Confidence            99999999999999999998762 014688888888887 999999999987788999999999 7 9999999765324


Q ss_pred             ccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          195 VPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      .+++...++.++ ++.++.+..+..+++++++++++.+|++++.++++++||++++++||+.+++++.+|+||+|
T Consensus       301 ~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~  374 (374)
T 1cdo_A          301 VATRPIQLIAGR-TWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  374 (374)
T ss_dssp             EEECHHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             cccCHHHHhcCC-eEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCCeeEEEEeC
Confidence            556666777677 99998765443346799999999999998888899999999999999999888778999986

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=7.5e-40  Score=281.45  Aligned_cols=230  Identities=40%  Similarity=0.688  Sum_probs=202.9

Q ss_pred             cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295           36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI  115 (269)
Q Consensus        36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~  115 (269)
                      +|+||||++++++.++++|+++++++|+++++++.|||+++.+.++++++++|||+|+|++|++++|+|+..|+++|+++
T Consensus       142 ~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~  221 (373)
T 2fzw_A          142 TSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGV  221 (373)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CccceeEEEEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEE
Confidence            48999999999999999999999999999999999999998888999999999999999999999999999999789999


Q ss_pred             cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCC-cEEEEEccCCC-c
Q 024295          116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK-GKVIVIGVGVD-A  193 (269)
Q Consensus       116 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~-~  193 (269)
                      ++++++++.++++|+++++++++ ...++.+.+++.+++ ++|++||++|.+..+..+++++++ + |+++.+|.... .
T Consensus       222 ~~~~~~~~~~~~lGa~~vi~~~~-~~~~~~~~v~~~~~~-g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~  298 (373)
T 2fzw_A          222 DINKDKFARAKEFGATECINPQD-FSKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHK-GWGVSVVVGVAASGE  298 (373)
T ss_dssp             CSCGGGHHHHHHHTCSEEECGGG-CSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECSCCCTTC
T ss_pred             cCCHHHHHHHHHcCCceEecccc-ccccHHHHHHHHhCC-CCCEEEECCCcHHHHHHHHHhhcc-CCcEEEEEecCCCCc
Confidence            99999999999999999998762 014688889988887 999999999987788999999999 7 99999997653 3


Q ss_pred             cccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          194 MVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      ..+++...++.++ ++.++.+..+..+++++++++++.+|++++.++++++||++++++||+.+.+++.+|+||+|
T Consensus       299 ~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~  373 (373)
T 2fzw_A          299 EIATRPFQLVTGR-TWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  373 (373)
T ss_dssp             CEEECTHHHHTTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             eeeeCHHHHhcCC-EEEEeccCCCCcHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCCcceEEEeC
Confidence            4556666677677 99998765433346799999999999998888899999999999999999887778999975

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=4.1e-40  Score=281.95  Aligned_cols=245  Identities=25%  Similarity=0.313  Sum_probs=218.8

Q ss_pred             cccccCCceeeeecCeEEeeee------------------------ccCcccceEeeccCceEEcCCCCCcccccccccc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIF------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCG   68 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~   68 (269)
                      +-.+|+++.++++ ||+|++..                        .+|+|+||++++++.++++|+++++++||+++++
T Consensus        95 V~~vG~~v~~~~v-GDrV~~~~~~~c~~g~~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~  173 (363)
T 3uog_A           95 VEAVGKSVTRFRP-GDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPCA  173 (363)
T ss_dssp             EEEECTTCCSCCT-TCEEEECSSTTCCSSSCCSCSSCCCCCCTTTTSCCCCBSEEEEEGGGEEECCTTSCHHHHHTTTTH
T ss_pred             EEEECCCCCCCCC-CCEEEEeccccccccccccccccccccccCcCCCCcceeEEEechHHeEECCCCCCHHHHhhcccH
Confidence            3446889999999 99998651                        2499999999999999999999999999999999


Q ss_pred             hhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHH
Q 024295           69 FTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELV  148 (269)
Q Consensus        69 ~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  148 (269)
                      ++|||+++.+.++++++++|||+|+|++|++++|+|+..|+ +|+++++++++++.++++|+++++|..+   +++.+.+
T Consensus       174 ~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~~~~~~v  249 (363)
T 3uog_A          174 GLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADHGINRLE---EDWVERV  249 (363)
T ss_dssp             HHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSEEEETTT---SCHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCCCEEEcCCc---ccHHHHH
Confidence            99999999888999999999999999999999999999999 9999999999999999999999999654   7899999


Q ss_pred             HhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHH
Q 024295          149 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLD  228 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (269)
                      ++.+++.++|++||++|.. .+..++++++++ |+++.+|.......+++...++.+++++.++....   +++++++++
T Consensus       250 ~~~~~g~g~D~vid~~g~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~  324 (363)
T 3uog_A          250 YALTGDRGADHILEIAGGA-GLGQSLKAVAPD-GRISVIGVLEGFEVSGPVGPLLLKSPVVQGISVGH---RRALEDLVG  324 (363)
T ss_dssp             HHHHTTCCEEEEEEETTSS-CHHHHHHHEEEE-EEEEEECCCSSCEECCBTTHHHHTCCEEEECCCCC---HHHHHHHHH
T ss_pred             HHHhCCCCceEEEECCChH-HHHHHHHHhhcC-CEEEEEecCCCcccCcCHHHHHhCCcEEEEEecCC---HHHHHHHHH
Confidence            9999888999999999965 789999999996 99999998765446677777888999999987543   467999999


Q ss_pred             HHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          229 KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       229 l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      ++.+|++  +++++++||++++++||+.+.++..+|+||+|
T Consensus       325 l~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~gKvvi~~  363 (363)
T 3uog_A          325 AVDRLGL--KPVIDMRYKFTEVPEALAHLDRGPFGKVVIEF  363 (363)
T ss_dssp             HHHHHTC--CCCEEEEEEGGGHHHHHHTGGGCCSBEEEEEC
T ss_pred             HHHcCCC--ccceeeEEcHHHHHHHHHHHHcCCCccEEEeC
Confidence            9999985  56789999999999999999887767999986

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=1.4e-39  Score=279.17  Aligned_cols=244  Identities=20%  Similarity=0.330  Sum_probs=217.6

Q ss_pred             ccccCCceeeeecCeEEeee---------------------------eccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295           14 GLMLDSTSRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLS   66 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~   66 (269)
                      -.+|+++.++++ ||+|++.                           ..+|+|+||++++++.++++|+++++++|| +.
T Consensus        88 ~~vG~~v~~~~v-GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa-l~  165 (370)
T 4ej6_A           88 VEAGSAVRDIAP-GARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGA-FC  165 (370)
T ss_dssp             EEECTTCCSSCT-TCEEEECCEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCTTGGG-GH
T ss_pred             EEECCCCCCCCC-CCEEEECCCCCCCCChHHhCcCcccCCCccccCCCCCCcceEEEEEchhhEEECCCCCCHHHHh-hh
Confidence            346889999999 9999752                           246999999999999999999999999998 55


Q ss_pred             cchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHH
Q 024295           67 CGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISE  146 (269)
Q Consensus        67 ~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  146 (269)
                      .++++||+++ +.++++++++|||+|+|++|++++|+|++.|+++|+++++++++.+.++++|+++++|+++   .++.+
T Consensus       166 ~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~---~~~~~  241 (370)
T 4ej6_A          166 EPLACCLHGV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSA---GDVVE  241 (370)
T ss_dssp             HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTS---SCHHH
T ss_pred             hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCC---cCHHH
Confidence            6999999997 7899999999999999999999999999999989999999999999999999999999987   88999


Q ss_pred             HHHh---hhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeeccCCCCCCc
Q 024295          147 LVKG---ITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGIKTKSD  222 (269)
Q Consensus       147 ~i~~---~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (269)
                      .+++   ++++ ++|+|||++|.+..+..++++++++ |+++.+|.... ...+++...++.+++++.|+....    .+
T Consensus       242 ~i~~~~~~~~g-g~Dvvid~~G~~~~~~~~~~~l~~~-G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~----~~  315 (370)
T 4ej6_A          242 AIAGPVGLVPG-GVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGEKVEIEPFDILFRELRVLGSFINP----FV  315 (370)
T ss_dssp             HHHSTTSSSTT-CEEEEEECSCCHHHHHHHHHHEEEE-EEEEECSCCCTTCCCCCCHHHHHHTTCEEEECCSCT----TC
T ss_pred             HHHhhhhccCC-CCCEEEECCCCHHHHHHHHHHhccC-CEEEEEeccCCCCccccCHHHHHhCCcEEEEeccCh----HH
Confidence            9988   7777 9999999999877899999999996 99999997664 356788888888999999987533    56


Q ss_pred             HHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe--eeEEeeC
Q 024295          223 LPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC--VKVLITI  269 (269)
Q Consensus       223 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~k~vl~~  269 (269)
                      ++++++++.+|+++++++++++||++++++||+.+.+++.  +|+++++
T Consensus       316 ~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~kvv~~~  364 (370)
T 4ej6_A          316 HRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLVIPSA  364 (370)
T ss_dssp             HHHHHHHHHTTCSCCGGGEEEEECGGGHHHHHHSCCCTTCSEEEECCC-
T ss_pred             HHHHHHHHHcCCCChhHcEEEEEEHHHHHHHHHHHHcCCCCeEEEEEcc
Confidence            9999999999999999999999999999999999987663  5888764

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=7.9e-39  Score=272.52  Aligned_cols=250  Identities=19%  Similarity=0.239  Sum_probs=215.5

Q ss_pred             cccccCCceeeeecCeEEeee---------------------------eccCcccceEeeccCceEEcCCCCCccccccc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFL   65 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~   65 (269)
                      +-.+|+++..+++ ||+|...                           ..+|+||||+++++++++++|+++++++||++
T Consensus        65 V~~vG~~V~~~~~-GdrV~~~~~~~~g~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l  143 (346)
T 4a2c_A           65 IDAVGSGVDDLHP-GDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFI  143 (346)
T ss_dssp             EEEECTTCCSCCT-TCEEEECCEECCSCSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEEEGGGEEECCTTSCGGGGGGH
T ss_pred             EEEECCCcccccC-CCeEEeeeccCCCCcccccCCccccCCCcccccCCCCcccccccccchheEEECCCCCCHHHHHhc
Confidence            3446899999999 9998642                           23599999999999999999999999999987


Q ss_pred             ccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHH
Q 024295           66 SCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSIS  145 (269)
Q Consensus        66 ~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  145 (269)
                      + ++.++++ +....+++++++|||+|+|++|++++|+++++|++.+++++++++|++.++++|+++++|+++   .++.
T Consensus       144 ~-~~~~~~~-~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~---~~~~  218 (346)
T 4a2c_A          144 E-PITVGLH-AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSE---MSAP  218 (346)
T ss_dssp             H-HHHHHHH-HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTT---SCHH
T ss_pred             h-HHHHHHH-HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCC---CCHH
Confidence            6 5555555 567889999999999999999999999999999978889999999999999999999999987   8888


Q ss_pred             HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC--ccccchhHhhhhCCceEEeeeccCC--CCCC
Q 024295          146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD--AMVPLNVIALACGGRTLKGTTFGGI--KTKS  221 (269)
Q Consensus       146 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  221 (269)
                      +.+++++++.++|+++|++|.+..++.++++++++ |+++.+|....  .....+...++.|++++.|++....  ...+
T Consensus       219 ~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~~~~~  297 (346)
T 4a2c_A          219 QMQSVLRELRFNQLILETAGVPQTVELAVEIAGPH-AQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQ  297 (346)
T ss_dssp             HHHHHHGGGCSSEEEEECSCSHHHHHHHHHHCCTT-CEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTCCSSTTCH
T ss_pred             HHHHhhcccCCcccccccccccchhhhhhheecCC-eEEEEEeccCCCccccccCHHHHhhceeEEEEEeccccCcchHH
Confidence            88888888889999999999988899999999996 99999997764  1233455567779999999865432  2346


Q ss_pred             cHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          222 DLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       222 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +++++++++.+|+++++++++++|||+++++||+.+.+++. +|+||.+
T Consensus       298 ~~~~~~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l~~~~~~GKvVl~P  346 (346)
T 4a2c_A          298 EWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP  346 (346)
T ss_dssp             HHHHHHHHHHTTCSCCGGGEEEEECHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred             HHHHHHHHHHcCCCCCCccEeEEEeHHHHHHHHHHHHcCCCceEEEEEC
Confidence            79999999999999999999999999999999999988776 6999975

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=6.7e-39  Score=273.78  Aligned_cols=246  Identities=20%  Similarity=0.306  Sum_probs=214.0

Q ss_pred             ccccCCceeeeecCeEEeee----------------------------eccCcccceEeeccCceEEcCCCCCccccccc
Q 024295           14 GLMLDSTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFL   65 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~   65 (269)
                      -.+|+++.++++ ||+|++.                            ..+|+|+||++++++.++++|+++++++|+++
T Consensus        76 ~~vG~~V~~~~v-GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~~  154 (356)
T 1pl8_A           76 EKVGSSVKHLKP-GDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALI  154 (356)
T ss_dssp             EEECTTCCSCCT-TCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHHH
T ss_pred             EEECCCCCCCCC-CCEEEEeccCCCCCChHHHCcCcccCCCccccCcCCCCCccccEEEeehHHEEECcCCCCHHHHHhh
Confidence            345889999999 9999854                            13599999999999999999999999999876


Q ss_pred             ccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHH
Q 024295           66 SCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSIS  145 (269)
Q Consensus        66 ~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  145 (269)
                       .++.|||+++ +.++++++++|||+|+|++|++++|+|+..|+++|+++++++++++.++++|+++++++++.++.++.
T Consensus       155 -~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~  232 (356)
T 1pl8_A          155 -EPLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIA  232 (356)
T ss_dssp             -HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHH
T ss_pred             -chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHH
Confidence             4889999998 78899999999999999999999999999999889999999999999999999999988610015677


Q ss_pred             HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHH
Q 024295          146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPT  225 (269)
Q Consensus       146 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (269)
                      +.+++.++ .++|++||++|.+..+..++++++++ |+++.+|... ...+++...++.+++++.++...    .+++++
T Consensus       233 ~~i~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~i~g~~~~----~~~~~~  305 (356)
T 1pl8_A          233 RKVEGQLG-CKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGS-EMTTVPLLHAAIREVDIKGVFRY----CNTWPV  305 (356)
T ss_dssp             HHHHHHHT-SCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCC-SCCCCCHHHHHHTTCEEEECCSC----SSCHHH
T ss_pred             HHHHHHhC-CCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEecCC-CCCccCHHHHHhcceEEEEeccc----HHHHHH
Confidence            88888887 59999999999887889999999996 9999999754 34567777788899999987642    467999


Q ss_pred             HHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          226 LLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       226 ~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      +++++.+|+++++++++++||++++++||+.+.++..+|+|+++
T Consensus       306 ~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvvi~~  349 (356)
T 1pl8_A          306 AISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKC  349 (356)
T ss_dssp             HHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             HHHHHHcCCCChHHheEEEecHHHHHHHHHHHhCCCceEEEEeC
Confidence            99999999998888999999999999999999888447999875

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=1.1e-39  Score=278.22  Aligned_cols=249  Identities=22%  Similarity=0.327  Sum_probs=215.9

Q ss_pred             cccccCCceeeeecCeEEeee------------------------------eccCcccceEeeccC--ceEEcCCCCCcc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHI------------------------------FSCSTWSEYMVIDAN--YVVKVDPSIDPS   60 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~------------------------------~~~g~~a~~~~v~~~--~~~~vp~~~~~~   60 (269)
                      +-.+|+++.++++ ||+|+..                              ..+|+|+||+++++.  .++++|++++++
T Consensus        65 V~~vG~~v~~~~v-GdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~  143 (352)
T 3fpc_A           65 VVEVGSEVKDFKP-GDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLE  143 (352)
T ss_dssp             EEEECTTCCSCCT-TCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCCSSBSCEEESSHHHHCEECCTTSCHH
T ss_pred             EEEECCCCCcCCC-CCEEEEccccCCCCchhhcCCCcCCccccccccccccCCCCcccceEEeccccCeEEECCCCCCHH
Confidence            3456889999999 9999842                              145999999999976  899999999999


Q ss_pred             cccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCC
Q 024295           61 DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEP  140 (269)
Q Consensus        61 ~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~  140 (269)
                      +|++++++++|||+++ +.++++++++|||+|+|++|++++|+|++.|+++|+++++++++++.++++|+++++++++  
T Consensus       144 ~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~--  220 (352)
T 3fpc_A          144 AAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKN--  220 (352)
T ss_dssp             HHTTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGG--
T ss_pred             HHhhccchhHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCC--
Confidence            9999999999999997 7899999999999999999999999999999988999999999999999999999999987  


Q ss_pred             CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHh--hhhCCceEEeeeccCC
Q 024295          141 NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIA--LACGGRTLKGTTFGGI  217 (269)
Q Consensus       141 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~  217 (269)
                       .++.+.+++.+++.++|++||++|.+..++.++++++++ |+++.+|.... ...+++...  +..+++++.++.... 
T Consensus       221 -~~~~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~-  297 (352)
T 3fpc_A          221 -GDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPG-SDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPG-  297 (352)
T ss_dssp             -SCHHHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBCCCC-
T ss_pred             -cCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEecccCCCCceecchhHhhhhccccEEEEeeccC-
Confidence             889999999998889999999999977899999999996 99999997653 233333322  234788888875422 


Q ss_pred             CCCCcHHHHHHHHHCCCCCCCcceeEEee-hhhHHHHHHHhcCCC-e-eeEEeeC
Q 024295          218 KTKSDLPTLLDKCKNKEFKLHQLLTHHVK-LEEIDKAIQLLKQPD-C-VKVLITI  269 (269)
Q Consensus       218 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~~~~a~~~~~~~~-~-~k~vl~~  269 (269)
                       .+++++++++++.+|+++++++++++|+ ++++++||+.+.+++ . +|+||++
T Consensus       298 -~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~~~~Kvvi~~  351 (352)
T 3fpc_A          298 -GRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVIL  351 (352)
T ss_dssp             -HHHHHHHHHHHHHTTSCCGGGGEEEEEESTTHHHHHHHHHHSCCTTCSEEEEEC
T ss_pred             -chhHHHHHHHHHHcCCCChhHhheeeCCCHHHHHHHHHHHHhCCCCcEEEEEEe
Confidence             2357999999999999999889999999 999999999998754 3 6999975

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=7.2e-39  Score=272.83  Aligned_cols=245  Identities=23%  Similarity=0.330  Sum_probs=216.1

Q ss_pred             ccccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLS   66 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~   66 (269)
                      -.+|+++.++++ ||+|++..                           .+|+||||++++++.++++|+++++++|++++
T Consensus        74 ~~vG~~v~~~~v-GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~  152 (348)
T 2d8a_A           74 VEIGPGVEGIEV-GDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQE  152 (348)
T ss_dssp             EEECTTCCSCCT-TCEEEECCEECCSCCC------------CEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHTTHH
T ss_pred             EEECCCCCcCCC-CCEEEEcCCCCCCCChhhhCcCcccCCCCCeecCCCCCcCcceEEeChHHeEECCCCCCHHHHHhhh
Confidence            345888899999 99998642                           35999999999999999999999999999886


Q ss_pred             cchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHH
Q 024295           67 CGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISE  146 (269)
Q Consensus        67 ~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  146 (269)
                       ++.|||+++ +.+++ ++++|||+|+|++|++++|+++..|+++|+++++++++.+.++++|+++++++++   +++.+
T Consensus       153 -~~~ta~~~l-~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~---~~~~~  226 (348)
T 2d8a_A          153 -PLGNAVDTV-LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFE---EDVVK  226 (348)
T ss_dssp             -HHHHHHHHH-TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTT---SCHHH
T ss_pred             -HHHHHHHHH-HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCC---cCHHH
Confidence             889999998 67889 9999999999999999999999999878999999999999999999999999887   78999


Q ss_pred             HHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchh-HhhhhCCceEEeeeccCCCCCCcHHH
Q 024295          147 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNV-IALACGGRTLKGTTFGGIKTKSDLPT  225 (269)
Q Consensus       147 ~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (269)
                      .+++.+++.++|++||++|.+..++.++++++++ |+++.+|.... ..+++. ..++.+++++.|+....  ..+++++
T Consensus       227 ~v~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~  302 (348)
T 2d8a_A          227 EVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGLYPG-KVTIDFNNLIIFKALTIYGITGRH--LWETWYT  302 (348)
T ss_dssp             HHHHHTTTSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCSS-CCCCCHHHHTTTTTCEEEECCCCC--SHHHHHH
T ss_pred             HHHHHcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCCC-CcccCchHHHHhCCcEEEEecCCC--cHHHHHH
Confidence            9999888779999999999877889999999996 99999997653 456666 67777999999976432  1367899


Q ss_pred             HHHHHHCCCCCCCcceeEEee-hhhHHHHHHHhcCCCeeeEEeeC
Q 024295          226 LLDKCKNKEFKLHQLLTHHVK-LEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       226 ~~~l~~~g~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      +++++.+|+++++++++++|| ++++++||+.++++..+|+|+++
T Consensus       303 ~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~gKvvi~~  347 (348)
T 2d8a_A          303 VSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRAGKTGKVVFML  347 (348)
T ss_dssp             HHHHHHHTCCCCTTTEEEEEESSTTHHHHHHHHHTTCCSEEEEEC
T ss_pred             HHHHHHcCCCChHHhheeeCCCHHHHHHHHHHHhCCCceEEEEee
Confidence            999999999988889999999 99999999999875557999875

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=4.5e-39  Score=274.52  Aligned_cols=246  Identities=20%  Similarity=0.279  Sum_probs=217.5

Q ss_pred             ccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc-
Q 024295           14 GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG-   92 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G-   92 (269)
                      -.+|+++.++++ ||+|+++..+|+|+||++++++.++++|+++++++||+++++++|||+++.+.++++++++|||+| 
T Consensus        98 ~~vG~~v~~~~v-GdrV~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg  176 (353)
T 4dup_A           98 VGVGPGVSGYAV-GDKVCGLANGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGG  176 (353)
T ss_dssp             EEECTTCCSCCT-TCEEEEECSSCCSBSEEEEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESST
T ss_pred             EEECCCCCCCCC-CCEEEEecCCCceeeEEEEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence            346889999999 999999888899999999999999999999999999999999999999998899999999999996 


Q ss_pred             CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHH
Q 024295           93 LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSE  172 (269)
Q Consensus        93 ~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~  172 (269)
                      +|++|++++|+++..|+ +|+++++++++.+.++++|++.++++++   .++.+.+++.+ +.++|++|||+|.+ .+..
T Consensus       177 ~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~---~~~~~~~~~~~-~~g~Dvvid~~g~~-~~~~  250 (353)
T 4dup_A          177 TSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERLGAKRGINYRS---EDFAAVIKAET-GQGVDIILDMIGAA-YFER  250 (353)
T ss_dssp             TSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHH-SSCEEEEEESCCGG-GHHH
T ss_pred             CCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEeCCc---hHHHHHHHHHh-CCCceEEEECCCHH-HHHH
Confidence            59999999999999999 9999999999999999999999999987   88999999988 55999999999986 7899


Q ss_pred             HHHHcccCCcEEEEEccCCCcccc-chhHhhhhCCceEEeeeccCCCCC-------CcHHHHHHHHHCCCCCCCcceeEE
Q 024295          173 ALETTKVGKGKVIVIGVGVDAMVP-LNVIALACGGRTLKGTTFGGIKTK-------SDLPTLLDKCKNKEFKLHQLLTHH  244 (269)
Q Consensus       173 ~~~~l~~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~g~~~~~~~~~~~  244 (269)
                      ++++++++ |+++.+|........ ++...++.+++++.++....+...       +.++++++++.+|+++  +.++++
T Consensus       251 ~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~  327 (353)
T 4dup_A          251 NIASLAKD-GCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTVA--PVIHKV  327 (353)
T ss_dssp             HHHTEEEE-EEEEECCCTTCSEEEEEECHHHHHTTCEEEECCSTTSCHHHHHHHHHHHHHHTHHHHHHTSSC--CCEEEE
T ss_pred             HHHHhccC-CEEEEEEecCCCcccCCCHHHHHhcCceEEEEeccccchhhhHHHHHHHHHHHHHHHHCCCcc--CCcceE
Confidence            99999996 999999977653333 677778889999999886554211       1177899999999964  568899


Q ss_pred             eehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          245 VKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       245 ~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      |+++++++||+.+.+++. +|+||++
T Consensus       328 ~~l~~~~~A~~~l~~~~~~gKvvl~~  353 (353)
T 4dup_A          328 FAFEDVADAHRLLEEGSHVGKVMLTV  353 (353)
T ss_dssp             EEGGGHHHHHHHHHHTCCSSEEEEEC
T ss_pred             EeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            999999999999988775 6999975

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.1e-38  Score=269.37  Aligned_cols=244  Identities=21%  Similarity=0.334  Sum_probs=212.1

Q ss_pred             ccccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccCceEEcCCCCCccccccc
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFL   65 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~   65 (269)
                      -.+|+++.++++ ||+|++..                            .+|+||||+++++++++++|+++++++|+++
T Consensus        73 ~~vG~~v~~~~v-GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~  151 (352)
T 1e3j_A           73 VKVGKNVKHLKK-GDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALL  151 (352)
T ss_dssp             EEECTTCCSCCT-TCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHTH
T ss_pred             EEeCCCCCCCCC-CCEEEEcCcCCCCCChhhhCcCcccCCCCcccCcCCCCccceeEEEeChHHeEECcCCCCHHHHHhh
Confidence            345889999999 99998641                            3599999999999999999999999999976


Q ss_pred             ccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHH
Q 024295           66 SCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSIS  145 (269)
Q Consensus        66 ~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  145 (269)
                       .++.|||+++ +.++++++++|||+|+|++|++++|+|+..|+ +|+++++++++++.++++|+++++++++  ..++.
T Consensus       152 -~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~--~~~~~  226 (352)
T 1e3j_A          152 -EPLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVVDP--AKEEE  226 (352)
T ss_dssp             -HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEECCT--TTSCH
T ss_pred             -chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCcc--cccHH
Confidence             4889999998 78899999999999999999999999999999 7999999999999999999999998762  14667


Q ss_pred             HHHHhhhC---CCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCc
Q 024295          146 ELVKGITH---GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSD  222 (269)
Q Consensus       146 ~~i~~~~~---~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (269)
                      +.+++.++   +.++|++||++|.+..++.++++++++ |+++.+|... ...+++...++.+++++.++...    +++
T Consensus       227 ~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~i~g~~~~----~~~  300 (352)
T 1e3j_A          227 SSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGS-QMVTVPLVNACAREIDIKSVFRY----CND  300 (352)
T ss_dssp             HHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCS-SCCCCCHHHHHTTTCEEEECCSC----SSC
T ss_pred             HHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC-CCccccHHHHHhcCcEEEEeccc----hHH
Confidence            77877775   458999999999877789999999996 9999999754 34567777788899999987642    467


Q ss_pred             HHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCC--eeeEEeeC
Q 024295          223 LPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPD--CVKVLITI  269 (269)
Q Consensus       223 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~k~vl~~  269 (269)
                      ++++++++.+|+++++++++++||++++++||+.+.+++  .+|+|+++
T Consensus       301 ~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~  349 (352)
T 1e3j_A          301 YPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISC  349 (352)
T ss_dssp             HHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHHCCTTCSEEEEEC
T ss_pred             HHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCCCceEEEEec
Confidence            999999999999988888999999999999999998775  47999875

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=9e-39  Score=273.77  Aligned_cols=245  Identities=22%  Similarity=0.278  Sum_probs=213.0

Q ss_pred             ccccCCceeeeecCeEEeeee----------------------------ccCcccceEeeccCceEEcCCCCCccccccc
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF----------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFL   65 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~----------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~   65 (269)
                      -.+|+++.++++ ||+|++..                            .+|+|+||++++++.++++|+ +++++|+++
T Consensus        85 ~~vG~~v~~~~v-GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~-~s~~~aa~~  162 (363)
T 3m6i_A           85 IAVHPSVKSIKV-GDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIGN-MSYENGAML  162 (363)
T ss_dssp             EEECTTCCSCCT-TCEEEECCEECCSCSHHHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGGEEECTT-CCHHHHHHH
T ss_pred             EEECCCCCCCCC-CCEEEEecccCCCCCHHHHCcCcccCCCccccCCCCCCccceeEEEEehhhEEECCC-CCHHHHHhh
Confidence            346889999999 99998641                            469999999999999999999 999999988


Q ss_pred             ccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCC--CCCcc
Q 024295           66 SCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDD--EPNKS  143 (269)
Q Consensus        66 ~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~--~~~~~  143 (269)
                      . ++.|||+++ +.+++++|++|||+|+|++|++++|+||..|+++|+++++++++++.++++ ++.++++..  .++++
T Consensus       163 ~-~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~  239 (363)
T 3m6i_A          163 E-PLSVALAGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEE  239 (363)
T ss_dssp             H-HHHHHHHHH-HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHHH
T ss_pred             h-HHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-chhcccccccccchHH
Confidence            4 889999998 789999999999999999999999999999996699999999999999999 655554321  11367


Q ss_pred             HHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcH
Q 024295          144 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDL  223 (269)
Q Consensus       144 ~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (269)
                      +.+.+++.+++.++|++||++|++..++.++++++++ |+++.+|.... ..+++...++.+++++.++...    .+++
T Consensus       240 ~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~----~~~~  313 (363)
T 3m6i_A          240 SAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFG-GKVFVIGVGKN-EIQIPFMRASVREVDLQFQYRY----CNTW  313 (363)
T ss_dssp             HHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECCCCCS-CCCCCHHHHHHHTCEEEECCSC----SSCH
T ss_pred             HHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEccCCC-CccccHHHHHhcCcEEEEccCC----HHHH
Confidence            8899999998889999999999987889999999996 99999997663 4557777888899999998643    4789


Q ss_pred             HHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCC-C-eeeEEeeC
Q 024295          224 PTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP-D-CVKVLITI  269 (269)
Q Consensus       224 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~-~-~~k~vl~~  269 (269)
                      +++++++.+|+++++++++++||++++++||+.+.++ . .+|+|++.
T Consensus       314 ~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~  361 (363)
T 3m6i_A          314 PRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQS  361 (363)
T ss_dssp             HHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHCGGGCCSEEEEEC
T ss_pred             HHHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHhccCCCeEEEEEec
Confidence            9999999999999899999999999999999999886 3 36999874

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=2.1e-38  Score=269.22  Aligned_cols=240  Identities=21%  Similarity=0.322  Sum_probs=213.1

Q ss_pred             ccccCCceeeeecCeEEee----------------------------eeccCcccceEeeccCceEEcCCCCCccccccc
Q 024295           14 GLMLDSTSRMSVRGQKLYH----------------------------IFSCSTWSEYMVIDANYVVKVDPSIDPSDASFL   65 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~----------------------------~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~   65 (269)
                      -.+|+++.++++ ||+|..                            +..+|+|+||++++++.++++|+++++++|+.+
T Consensus        70 ~~vG~~v~~~~v-GdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l  148 (340)
T 3s2e_A           70 SAVGSGVSRVKE-GDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLLPDKVGFVEIAPI  148 (340)
T ss_dssp             EEECSSCCSCCT-TCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTSCHHHHGGG
T ss_pred             EEECCCCCcCCC-CCEEEecCCCCCCCCChHHhCcCcccCccccccCCCCCCcceeEEEechHHEEECCCCCCHHHhhcc
Confidence            346889999999 999942                            224699999999999999999999999999999


Q ss_pred             ccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHH
Q 024295           66 SCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSIS  145 (269)
Q Consensus        66 ~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  145 (269)
                      ++++.|||+++ +..+++++++|||+|+|++|++++|+++..|+ +|+++++++++.+.++++|+++++|+++   .++.
T Consensus       149 ~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~i~~~~---~~~~  223 (340)
T 3s2e_A          149 LCAGVTVYKGL-KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVNARD---TDPA  223 (340)
T ss_dssp             GTHHHHHHHHH-HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEETTT---SCHH
T ss_pred             cchhHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCEEEeCCC---cCHH
Confidence            99999999998 67899999999999999999999999999999 9999999999999999999999999987   8888


Q ss_pred             HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHH
Q 024295          146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPT  225 (269)
Q Consensus       146 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (269)
                      +.+++ +.+ ++|++||++|.+..++.++++++++ |+++.+|.... ..+++...++.+++++.++....   ++++++
T Consensus       224 ~~~~~-~~g-~~d~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~  296 (340)
T 3s2e_A          224 AWLQK-EIG-GAHGVLVTAVSPKAFSQAIGMVRRG-GTIALNGLPPG-DFGTPIFDVVLKGITIRGSIVGT---RSDLQE  296 (340)
T ss_dssp             HHHHH-HHS-SEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCSS-EEEEEHHHHHHTTCEEEECCSCC---HHHHHH
T ss_pred             HHHHH-hCC-CCCEEEEeCCCHHHHHHHHHHhccC-CEEEEeCCCCC-CCCCCHHHHHhCCeEEEEEecCC---HHHHHH
Confidence            88888 555 8999999999888999999999996 99999998763 56677777888999999987543   478999


Q ss_pred             HHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          226 LLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       226 ~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +++++.+|++++.   .+.+|++++++||+.+.+++. +|+||++
T Consensus       297 ~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~Gkvvv~~  338 (340)
T 3s2e_A          297 SLDFAAHGDVKAT---VSTAKLDDVNDVFGRLREGKVEGRVVLDF  338 (340)
T ss_dssp             HHHHHHTTSCCCC---EEEECGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             HHHHHHhCCCCce---EEEEeHHHHHHHHHHHHcCCCceEEEEec
Confidence            9999999997753   467899999999999998876 6999875

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.6e-38  Score=271.60  Aligned_cols=240  Identities=19%  Similarity=0.272  Sum_probs=209.6

Q ss_pred             cccccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCccccc--
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDAS--   63 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa--   63 (269)
                      +-.+|+++.++++ ||+|++..                           .+|+||||++++++.++++|+++++++|+  
T Consensus        85 V~~vG~~v~~~~v-GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~  163 (359)
T 1h2b_A           85 IEEVAEGVEGLEK-GDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDISREKLVEM  163 (359)
T ss_dssp             EEEECTTCCSCCT-TCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCHHHHHHT
T ss_pred             EEEECCCCCCCCC-CCEEEeCCCCCCCCChhhhCcCcccCCCccccccCCCCcccceEEechHhEEECCCCCCHHHHhhc
Confidence            3445889999999 99997642                           35999999999999999999999999999  


Q ss_pred             -ccccchhhhHHHHHHh-cCCCCCCeEEEEcCChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCCCceeeCCCCCC
Q 024295           64 -FLSCGFTTGYGAAWKE-AKVEKGSSVAVLGLGTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEP  140 (269)
Q Consensus        64 -~~~~~~~~a~~~l~~~-~~~~~~~~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~  140 (269)
                       .+++++.|||+++.+. ++++++++|||+|+|++|++++|+||.. |+ +|+++++++++++.++++|+++++|+++  
T Consensus       164 ~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~--  240 (359)
T 1h2b_A          164 APLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAERLGADHVVDARR--  240 (359)
T ss_dssp             GGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHHHTTCSEEEETTS--
T ss_pred             cchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHHHhCCCEEEeccc--
Confidence             7888899999998765 8999999999999999999999999999 99 8999999999999999999999999986  


Q ss_pred             CccHHHHHHhhhCCCCccEEEEccCChh--HHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCC
Q 024295          141 NKSISELVKGITHGMGVDYCFECTGVPS--LLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIK  218 (269)
Q Consensus       141 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~--~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (269)
                       . +.+.+++++++.++|++||++|++.  .+..++++  ++ |+++.+|.... . +++...++.+++++.++....  
T Consensus       241 -~-~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~-G~~v~~g~~~~-~-~~~~~~~~~~~~~i~g~~~~~--  311 (359)
T 1h2b_A          241 -D-PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RM-GRLIIVGYGGE-L-RFPTIRVISSEVSFEGSLVGN--  311 (359)
T ss_dssp             -C-HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EE-EEEEECCCSSC-C-CCCHHHHHHTTCEEEECCSCC--
T ss_pred             -h-HHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CC-CEEEEEeCCCC-C-CCCHHHHHhCCcEEEEecCCC--
Confidence             6 8888888887778999999999886  77788877  85 99999997653 3 677777778999999986432  


Q ss_pred             CCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          219 TKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       219 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                       .++++++++++.+|++++  .+ ++||++++++||+.+.+++. +|+|+++
T Consensus       312 -~~~~~~~~~l~~~g~l~~--~i-~~~~l~~~~~A~~~~~~~~~~gKvvv~~  359 (359)
T 1h2b_A          312 -YVELHELVTLALQGKVRV--EV-DIHKLDEINDVLERLEKGEVLGRAVLIP  359 (359)
T ss_dssp             -HHHHHHHHHHHHTTSCCC--CE-EEEEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred             -HHHHHHHHHHHHcCCCcc--eE-EEEeHHHHHHHHHHHHcCCCceEEEeeC
Confidence             467999999999999764  46 89999999999999988775 7999875

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=2e-38  Score=269.86  Aligned_cols=242  Identities=20%  Similarity=0.306  Sum_probs=212.1

Q ss_pred             ccccCCceeeeecCeEEeeee--------------------------------ccCcccceEeec-cCceEEcCCCCCcc
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF--------------------------------SCSTWSEYMVID-ANYVVKVDPSIDPS   60 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~--------------------------------~~g~~a~~~~v~-~~~~~~vp~~~~~~   60 (269)
                      -.+|+++.++++ ||+|++..                                .+|+|+||++++ ++.++++|+ ++++
T Consensus        69 ~~vG~~v~~~~v-GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~~p~-~~~~  146 (345)
T 3jv7_A           69 AELGEGVTGFGV-GDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGD-LDPV  146 (345)
T ss_dssp             EEECTTCCSCCT-TCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBCCSSBSEEEESCGGGEEECTT-CCHH
T ss_pred             EEECCCCCCCCC-CCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCCceeeEEEEecchhceEeCCC-CCHH
Confidence            345889999999 99997632                                369999999999 999999999 9999


Q ss_pred             cccccccchhhhHHHHHH-hcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCC
Q 024295           61 DASFLSCGFTTGYGAAWK-EAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDE  139 (269)
Q Consensus        61 ~aa~~~~~~~~a~~~l~~-~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~  139 (269)
                      +|+.++++++|||+++.+ ...++++++|||+|+|++|++++|+|+..|..+|+++++++++++.++++|++++++++  
T Consensus       147 ~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~--  224 (345)
T 3jv7_A          147 AAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSG--  224 (345)
T ss_dssp             HHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECS--
T ss_pred             HhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCC--
Confidence            999999999999999876 45899999999999999999999999999544999999999999999999999999876  


Q ss_pred             CCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC
Q 024295          140 PNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT  219 (269)
Q Consensus       140 ~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (269)
                        .++.+.+++.+++.++|++||++|++..++.++++++++ |+++.+|.......+++. .++.+++++.++....   
T Consensus       225 --~~~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~-~~~~~~~~i~g~~~~~---  297 (345)
T 3jv7_A          225 --AGAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVD-GHISVVGIHAGAHAKVGF-FMIPFGASVVTPYWGT---  297 (345)
T ss_dssp             --TTHHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCTTCCEEEST-TTSCTTCEEECCCSCC---
T ss_pred             --CcHHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCCCCCCCcCH-HHHhCCCEEEEEecCC---
Confidence              478889999998889999999999987899999999996 999999977643455554 6667999999987543   


Q ss_pred             CCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          220 KSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       220 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      .++++++++++.+|++++   ++++|+++++++||+.+.+++. +|+||++
T Consensus       298 ~~~~~~~~~l~~~g~l~~---~~~~~~l~~~~~A~~~~~~~~~~Gkvvv~p  345 (345)
T 3jv7_A          298 RSELMEVVALARAGRLDI---HTETFTLDEGPAAYRRLREGSIRGRGVVVP  345 (345)
T ss_dssp             HHHHHHHHHHHHTTCCCC---CEEEECSTTHHHHHHHHHHTCCSSEEEECC
T ss_pred             HHHHHHHHHHHHcCCCce---EEEEEcHHHHHHHHHHHHcCCCceeEEeCC
Confidence            468999999999999876   4589999999999999988776 6999975

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=2e-38  Score=269.61  Aligned_cols=245  Identities=23%  Similarity=0.296  Sum_probs=214.8

Q ss_pred             cccccCCceeeeecCeEEeee---------------------------eccCcccceEeeccCceEEcCCCCCccccccc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFL   65 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~   65 (269)
                      +-.+|+++.++++ ||+|++.                           ..+|+|+||++++++.++++|+++++++|+++
T Consensus        69 V~~vG~~v~~~~v-GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~  147 (343)
T 2dq4_A           69 VEAVGPGVRRPQV-GDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAIL  147 (343)
T ss_dssp             EEEECTTCCSSCT-TCEEEECCEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCHHHHTTH
T ss_pred             EEEECCCCCcCCC-CCEEEECCCCCCCCChhhhCcCcccCCCcceecCCCCCcceeEEEEchHHeEECCCCCCHHHHHhh
Confidence            3445889999999 9999863                           24599999999999999999999999999988


Q ss_pred             ccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHH
Q 024295           66 SCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSIS  145 (269)
Q Consensus        66 ~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  145 (269)
                       .++.|||+++.+.+++ ++++|||+|+|++|++++|+|+..|+++|+++++++++++.++++ +++++++.+   +++.
T Consensus       148 -~~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~---~~~~  221 (343)
T 2dq4_A          148 -EPFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNPLE---EDLL  221 (343)
T ss_dssp             -HHHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECTTT---SCHH
T ss_pred             -hHHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCcCc---cCHH
Confidence             4788999998657889 999999999999999999999999987899999999999999999 999999887   7899


Q ss_pred             HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchh-HhhhhCCceEEeeeccCCCCCCcHH
Q 024295          146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNV-IALACGGRTLKGTTFGGIKTKSDLP  224 (269)
Q Consensus       146 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  224 (269)
                      +.+++.+ +.++|++||++|.+..++.++++++++ |+++.+|... ...+++. ..++.+++++.|+....  ..++++
T Consensus       222 ~~~~~~~-~~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~-~~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~  296 (343)
T 2dq4_A          222 EVVRRVT-GSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPS-DPIRFDLAGELVMRGITAFGIAGRR--LWQTWM  296 (343)
T ss_dssp             HHHHHHH-SSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCS-SCEEECHHHHTGGGTCEEEECCSCC--TTHHHH
T ss_pred             HHHHHhc-CCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC-CCceeCcHHHHHhCceEEEEeecCC--CHHHHH
Confidence            9999888 559999999999876889999999996 9999999765 3456676 67778999999986431  246799


Q ss_pred             HHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          225 TLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       225 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      ++++++++|+++++++++++||++++++||+.+.+++.+|+|+++
T Consensus       297 ~~~~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvv~~~  341 (343)
T 2dq4_A          297 QGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQAVKVILDP  341 (343)
T ss_dssp             HHHHHHHHTSSCCGGGEEEEEEGGGHHHHHHHHHHSSCSEEEEET
T ss_pred             HHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCceEEEEee
Confidence            999999999998888999999999999999998876668999875

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1e-38  Score=271.17  Aligned_cols=245  Identities=20%  Similarity=0.300  Sum_probs=207.7

Q ss_pred             cccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG   92 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G   92 (269)
                      +-.+|+++. +++ ||+|+++..+|+|+||++++++.++++|+++++++|++++++++|||+++.+.++++++++|||+|
T Consensus        90 V~~vG~~v~-~~v-GDrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G  167 (342)
T 4eye_A           90 VRSAPEGSG-IKP-GDRVMAFNFIGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLG  167 (342)
T ss_dssp             EEECCTTSS-CCT-TCEEEEECSSCCSBSEEEECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESS
T ss_pred             EEEECCCCC-CCC-CCEEEEecCCCcceEEEEEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEEC
Confidence            344578888 999 999999988899999999999999999999999999999999999999998899999999999999


Q ss_pred             C-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHH
Q 024295           93 L-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS  171 (269)
Q Consensus        93 ~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~  171 (269)
                      + |++|++++|+++..|+ +|+++++++++.+.++++|++.++++.    .++.+.+++.+++.++|++|||+|.+ .+.
T Consensus       168 asg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~v~~~~----~~~~~~v~~~~~~~g~Dvvid~~g~~-~~~  241 (342)
T 4eye_A          168 AAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGADIVLPLE----EGWAKAVREATGGAGVDMVVDPIGGP-AFD  241 (342)
T ss_dssp             TTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEESS----TTHHHHHHHHTTTSCEEEEEESCC---CHH
T ss_pred             CCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEecCc----hhHHHHHHHHhCCCCceEEEECCchh-HHH
Confidence            7 9999999999999999 999999999999999999999998875    57888899988888999999999986 789


Q ss_pred             HHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCC------CCCcHHHHHHHHHCCCCCCCcceeEEe
Q 024295          172 EALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIK------TKSDLPTLLDKCKNKEFKLHQLLTHHV  245 (269)
Q Consensus       172 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~g~~~~~~~~~~~~  245 (269)
                      .++++++++ |+++.+|........++...++.+++++.++....+.      .++.++++++++.+|   ++++++++|
T Consensus       242 ~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g---l~~~i~~~~  317 (342)
T 4eye_A          242 DAVRTLASE-GRLLVVGFAAGGIPTIKVNRLLLRNASLIGVAWGEFLRTHADYLYETQAGLEKLVAEG---MRPPVSARI  317 (342)
T ss_dssp             HHHHTEEEE-EEEEEC----------CCCCGGGTTCEEEECCHHHHHHHCTTHHHHHHHHHHHHHHTT---CCCCEEEEE
T ss_pred             HHHHhhcCC-CEEEEEEccCCCCCccCHHHHhhcCCEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcC---CCCCcceEE
Confidence            999999996 9999999765433345555677799999998754331      114588899999999   445688999


Q ss_pred             ehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          246 KLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       246 ~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      |++++++||+.+.+++. +|+||++
T Consensus       318 ~l~~~~~A~~~~~~~~~~gKvvl~P  342 (342)
T 4eye_A          318 PLSEGRQALQDFADGKVYGKMVLVP  342 (342)
T ss_dssp             EGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             eHHHHHHHHHHHHhCCCCceEEEeC
Confidence            99999999999988876 6999875

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=3.6e-38  Score=268.98  Aligned_cols=249  Identities=15%  Similarity=0.225  Sum_probs=212.2

Q ss_pred             ccccCCc-eeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295           14 GLMLDST-SRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG   92 (269)
Q Consensus        14 ~~vg~~~-~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G   92 (269)
                      -.+|+++ .++++ ||+|++...+|+||||++++++.++++|+++++++||+++++++|||+++.+.++++++++|||+|
T Consensus        92 ~~vG~~v~~~~~v-GdrV~~~~~~G~~aey~~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~G  170 (354)
T 2j8z_A           92 AELGPGCQGHWKI-GDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHA  170 (354)
T ss_dssp             EEECSCC--CCCT-TCEEEEECSSCCSBSEEEEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESS
T ss_pred             EEECCCcCCCCCC-CCEEEEecCCCcceeEEEeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEEC
Confidence            3458888 89999 999999877899999999999999999999999999999999999999998889999999999998


Q ss_pred             -CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHH
Q 024295           93 -LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS  171 (269)
Q Consensus        93 -~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~  171 (269)
                       +|++|++++|+++..|+ +|+++++++++.+.++++|++.++++.+   .++.+.+.+.+++.++|++||++|.+ .+.
T Consensus       171 a~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~G~~-~~~  245 (354)
T 2j8z_A          171 GLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLGAAAGFNYKK---EDFSEATLKFTKGAGVNLILDCIGGS-YWE  245 (354)
T ss_dssp             TTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTTSCEEEEEESSCGG-GHH
T ss_pred             CccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEecCC---hHHHHHHHHHhcCCCceEEEECCCch-HHH
Confidence             59999999999999999 9999999999999999999999999887   78888998888766899999999987 789


Q ss_pred             HHHHHcccCCcEEEEEccCCCccccchh-HhhhhCCceEEeeeccCCCCC-------CcHHHHHHHHHCC-CCCCCccee
Q 024295          172 EALETTKVGKGKVIVIGVGVDAMVPLNV-IALACGGRTLKGTTFGGIKTK-------SDLPTLLDKCKNK-EFKLHQLLT  242 (269)
Q Consensus       172 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~g-~~~~~~~~~  242 (269)
                      .++++++++ |+++.+|.......+++. ..++.+++++.++........       +.++++++++.+| +++++++++
T Consensus       246 ~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~i~  324 (354)
T 2j8z_A          246 KNVNCLALD-GRWVLYGLMGGGDINGPLFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLD  324 (354)
T ss_dssp             HHHHHEEEE-EEEEECCCTTCSCCCSCHHHHHHHTTCEEEECCSTTCCHHHHHHHHHHHHHHTGGGGTC---CCCCCCEE
T ss_pred             HHHHhccCC-CEEEEEeccCCCccCCChhHHHHhCCCEEEEEEcccccccccHHHHHHHHHHHHHHHHcCCCccccCccc
Confidence            999999996 999999976543345666 677779999999875443110       0123577888899 444667799


Q ss_pred             EEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          243 HHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       243 ~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++||++++++||+.+.+++. +|+|+++
T Consensus       325 ~~~~l~~~~~A~~~~~~~~~~gKvvv~~  352 (354)
T 2j8z_A          325 RIYPVTEIQEAHKYMEANKNIGKIVLEL  352 (354)
T ss_dssp             EEEEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred             eEEcHHHHHHHHHHHHhCCCCceEEEec
Confidence            99999999999999987765 6999875

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=7.1e-38  Score=266.83  Aligned_cols=243  Identities=26%  Similarity=0.337  Sum_probs=216.0

Q ss_pred             ccccCCceeeeecCeEEeee----------------------------eccCcccceEeeccCceEEcCCCCCccccccc
Q 024295           14 GLMLDSTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFL   65 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~   65 (269)
                      -.+|+++.++++ ||+|+..                            ..+|+|+||+.++++.++++|+++++++|+++
T Consensus        67 ~~vG~~V~~~~~-GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l  145 (348)
T 4eez_A           67 KEIGADVSSLQV-GDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYSVDGGMAEEAIVVADYAVKVPDGLDPIEASSI  145 (348)
T ss_dssp             EEECTTCCSCCT-TCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGSCBCCTTSCHHHHHHH
T ss_pred             EEECceeeeccc-CCeEeecccccccCccccccCCcccccccccccccccCCcceeeccccccceeecCCCCCHHHHhhc
Confidence            446899999999 9999642                            22489999999999999999999999999999


Q ss_pred             ccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHH
Q 024295           66 SCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSIS  145 (269)
Q Consensus        66 ~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  145 (269)
                      +++++|||+++ +.++++++++|||+|+|++|.+++|+++..+..+|++++++++|++.++++|+++++|+++   .++.
T Consensus       146 ~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~---~~~~  221 (348)
T 4eez_A          146 TCAGVTTYKAI-KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGD---VNPV  221 (348)
T ss_dssp             HHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-C---CCHH
T ss_pred             ccceeeEEeee-cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCC---CCHH
Confidence            99999999986 5778999999999999999999999999875559999999999999999999999999988   8999


Q ss_pred             HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHH
Q 024295          146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPT  225 (269)
Q Consensus       146 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (269)
                      +++++.+++.++|.++++++++..+..++++++++ |+++.+|.+. ...+++...++.+++++.|+..+.   ++++++
T Consensus       222 ~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~i~gs~~~~---~~~~~~  296 (348)
T 4eez_A          222 DEIKKITGGLGVQSAIVCAVARIAFEQAVASLKPM-GKMVAVAVPN-TEMTLSVPTVVFDGVEVAGSLVGT---RLDLAE  296 (348)
T ss_dssp             HHHHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEE-EEEEECCCCS-CEEEECHHHHHHSCCEEEECCSCC---HHHHHH
T ss_pred             HHhhhhcCCCCceEEEEeccCcchhheeheeecCC-ceEEEEeccC-CCCccCHHHHHhCCeEEEEEecCC---HHHHHH
Confidence            99999999999999999999988899999999996 9999999776 356677778888999999987553   467999


Q ss_pred             HHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          226 LLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       226 ~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +++++.+|++++  + +++||++++++||+.+++++. +|+||+|
T Consensus       297 ~~~l~~~g~i~p--~-~~~~~l~~~~~A~~~l~~g~~~GKvVl~~  338 (348)
T 4eez_A          297 AFQFGAEGKVKP--I-VATRKLEEINDIIDEMKAGKIEGRMVIDF  338 (348)
T ss_dssp             HHHHHHTTSCCC--C-EEEECGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred             HHHHHHcCCCEE--E-EEEEeHHHHHHHHHHHHCCCCccEEEEEc
Confidence            999999999764  3 478999999999999999876 6999986

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=1.2e-37  Score=263.99  Aligned_cols=247  Identities=20%  Similarity=0.238  Sum_probs=216.6

Q ss_pred             cccccCCceeeeecCeEEeeeeccCcccceEeec-cCceEEcCCCCCccc---ccccccchhhhHHHHHHhcCCCCCCeE
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVID-ANYVVKVDPSIDPSD---ASFLSCGFTTGYGAAWKEAKVEKGSSV   88 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~-~~~~~~vp~~~~~~~---aa~~~~~~~~a~~~l~~~~~~~~~~~v   88 (269)
                      +-.+|+++.++++ ||+|++.. +|+|+||++++ ++.++++|+++++++   ++++++.++|||+++.+.++++++++|
T Consensus        75 V~~vG~~v~~~~~-GdrV~~~~-~G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~v  152 (334)
T 3qwb_A           75 VVAKGKGVTNFEV-GDQVAYIS-NSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYV  152 (334)
T ss_dssp             EEEECTTCCSCCT-TCEEEEEC-SSCSBSEEEEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEE
T ss_pred             EEEECCCCCCCCC-CCEEEEee-CCcceEEEEecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEE
Confidence            3446889999999 99998765 59999999999 999999999999999   888888999999999888899999999


Q ss_pred             EEEc-CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh
Q 024295           89 AVLG-LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP  167 (269)
Q Consensus        89 lI~G-~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~  167 (269)
                      ||+| +|++|++++|+++..|+ +|+++++++++++.++++|+++++++.+   .++.+.+++.+++.++|++||++|..
T Consensus       153 lV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~~---~~~~~~~~~~~~~~g~D~vid~~g~~  228 (334)
T 3qwb_A          153 LLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEYGAEYLINASK---EDILRQVLKFTNGKGVDASFDSVGKD  228 (334)
T ss_dssp             EESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTT---SCHHHHHHHHTTTSCEEEEEECCGGG
T ss_pred             EEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEEeCCC---chHHHHHHHHhCCCCceEEEECCChH
Confidence            9999 59999999999999999 9999999999999999999999999987   88999999998877999999999984


Q ss_pred             hHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC-C----CcHHHHHHHHHCCCCCCCccee
Q 024295          168 SLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT-K----SDLPTLLDKCKNKEFKLHQLLT  242 (269)
Q Consensus       168 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~l~~~g~~~~~~~~~  242 (269)
                       .++.++++++++ |+++.+|.......+++...+..+++++.+++...+.. +    +.++++++++.+|++++.  ++
T Consensus       229 -~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~  304 (334)
T 3qwb_A          229 -TFEISLAALKRK-GVFVSFGNASGLIPPFSITRLSPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIK--IY  304 (334)
T ss_dssp             -GHHHHHHHEEEE-EEEEECCCTTCCCCCBCGGGGTTTTCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSSCCC--EE
T ss_pred             -HHHHHHHHhccC-CEEEEEcCCCCCCCCcchhhhhhCceEEEEEEeccccCCHHHHHHHHHHHHHHHHCCCccCc--ee
Confidence             889999999996 99999998764334667777778999999876554422 1    234689999999997765  88


Q ss_pred             EEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          243 HHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       243 ~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++||++++++||+.+.+++. +|+|+++
T Consensus       305 ~~~~l~~~~~A~~~~~~~~~~gKvvi~~  332 (334)
T 3qwb_A          305 KTYPLRDYRTAAADIESRKTVGKLVLEI  332 (334)
T ss_dssp             EEEEGGGHHHHHHHHHTTCCCBEEEEEC
T ss_pred             eEEcHHHHHHHHHHHHhCCCceEEEEec
Confidence            99999999999999988776 6999975

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=7.1e-38  Score=264.34  Aligned_cols=248  Identities=21%  Similarity=0.209  Sum_probs=213.9

Q ss_pred             cccccCCceeeeecCeEEeeee-ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEE
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIF-SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVL   91 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~-~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~   91 (269)
                      +-.+|+++.++++ ||+|++.. .+|+|+||++++++.++++|+++++++|+++++.++|||+++.+.++++++++|||+
T Consensus        69 V~~vG~~v~~~~~-GdrV~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~  147 (325)
T 3jyn_A           69 VEAVGDEVTRFKV-GDRVAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFH  147 (325)
T ss_dssp             EEEECTTCCSCCT-TCEEEESSSSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEES
T ss_pred             EEEECCCCCCCCC-CCEEEEecCCCccccceEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEE
Confidence            3456889999999 99998764 469999999999999999999999999999999999999999888999999999999


Q ss_pred             c-CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHH
Q 024295           92 G-LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLL  170 (269)
Q Consensus        92 G-~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~  170 (269)
                      | +|++|++++|+++..|+ +|+++++++++.+.++++|+++++++.+   .++.+.+++.+++.++|++||++|.+ .+
T Consensus       148 Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~---~~~~~~~~~~~~~~g~Dvvid~~g~~-~~  222 (325)
T 3jyn_A          148 AAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETIDYSH---EDVAKRVLELTDGKKCPVVYDGVGQD-TW  222 (325)
T ss_dssp             STTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTTCCEEEEEESSCGG-GH
T ss_pred             cCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEeCCC---ccHHHHHHHHhCCCCceEEEECCChH-HH
Confidence            9 59999999999999999 9999999999999999999999999987   88999999999888999999999985 78


Q ss_pred             HHHHHHcccCCcEEEEEccCCCccccchhHhhhhC-CceEEeeeccCCC-CCCc----HHHHHHHHHCCCCCCCcceeEE
Q 024295          171 SEALETTKVGKGKVIVIGVGVDAMVPLNVIALACG-GRTLKGTTFGGIK-TKSD----LPTLLDKCKNKEFKLHQLLTHH  244 (269)
Q Consensus       171 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~----~~~~~~l~~~g~~~~~~~~~~~  244 (269)
                      ..++++++++ |+++.+|.......+++...+..+ ++.+.+..+..+. .+++    ++++++++.+|++++.  ++++
T Consensus       223 ~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~  299 (325)
T 3jyn_A          223 LTSLDSVAPR-GLVVSFGNASGPVSGVNLGILAQKDSVYVTRPTLGSYANNAQNLQTMADELFDMLASGKLKVD--GIEQ  299 (325)
T ss_dssp             HHHHTTEEEE-EEEEECCCTTCCCCSCCTHHHHHTTSCEEECCCHHHHSCSTTHHHHHHHHHHHHHHTTSSCCC--CCEE
T ss_pred             HHHHHHhcCC-CEEEEEecCCCCCCCCCHHHHhhcCcEEEEeeeeeeecCCHHHHHHHHHHHHHHHHCCCeeCc--cccE
Confidence            9999999996 999999987643335666666666 5677654433221 2233    4588999999998765  7889


Q ss_pred             eehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          245 VKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       245 ~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ||++++++||+.+.+++. +|+||.+
T Consensus       300 ~~l~~~~~A~~~~~~~~~~Gkvvl~p  325 (325)
T 3jyn_A          300 YALKDAAKAQIELSARRTTGSTILIP  325 (325)
T ss_dssp             EEGGGHHHHHHHHHTTCCCSCEEEEC
T ss_pred             EcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            999999999999988876 6999875

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.1e-38  Score=271.02  Aligned_cols=223  Identities=28%  Similarity=0.357  Sum_probs=195.7

Q ss_pred             cCcccceEee-ccCceEEcCCCCCcc-cccccccchhhhHHHHHHhcC-CCCCCeEEEEcCChhHHHHHHHHHHcCCCeE
Q 024295           36 CSTWSEYMVI-DANYVVKVDPSIDPS-DASFLSCGFTTGYGAAWKEAK-VEKGSSVAVLGLGTVGLGAVDGARMHGAAKI  112 (269)
Q Consensus        36 ~g~~a~~~~v-~~~~~~~vp~~~~~~-~aa~~~~~~~~a~~~l~~~~~-~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v  112 (269)
                      +|+||||+++ +++.++++|++++++ +|++++ +++|||+++ ..++ ++++++|||+|+|++|++++|+|+..|+.+|
T Consensus       146 ~G~~aey~~v~~~~~~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~V  223 (380)
T 1vj0_A          146 RGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENV  223 (380)
T ss_dssp             CSSSBSEEEECTTCCEEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEE
T ss_pred             CccccceEEEcccceEEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceE
Confidence            5999999999 999999999999999 777776 999999998 5678 9999999999999999999999999994499


Q ss_pred             EEEcCCcchHHHHHhCCCceeeCCC---CCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEcc
Q 024295          113 IGIDKNPWKKEKGKAFGMTDFINPD---DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       113 ~~~~~~~~~~~~~~~~g~~~v~~~~---~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      +++++++++++.++++|++++++++   +   .++.+.+++.+++.++|++||++|.+..+..++++++++ |+++.+|.
T Consensus       224 i~~~~~~~~~~~~~~lGa~~vi~~~~~~~---~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~  299 (380)
T 1vj0_A          224 IVIAGSPNRLKLAEEIGADLTLNRRETSV---EERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGV  299 (380)
T ss_dssp             EEEESCHHHHHHHHHTTCSEEEETTTSCH---HHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCC
T ss_pred             EEEcCCHHHHHHHHHcCCcEEEeccccCc---chHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcC-CEEEEEec
Confidence            9999999999999999999999987   5   788889999888779999999999876889999999996 99999997


Q ss_pred             CC-CccccchhHh-hhhCCceEEeeeccCCCCCCcHHHHHHHHHC--CCCCCCcceeEEeehhhHHHHHHHhcCCCeeeE
Q 024295          190 GV-DAMVPLNVIA-LACGGRTLKGTTFGGIKTKSDLPTLLDKCKN--KEFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKV  265 (269)
Q Consensus       190 ~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~  265 (269)
                      .. ....+++... ++.+++++.++....   +++++++++++.+  |++  +++++++||++++++||+.+.+++..|+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~Kv  374 (380)
T 1vj0_A          300 AVPQDPVPFKVYEWLVLKNATFKGIWVSD---TSHFVKTVSITSRNYQLL--SKLITHRLPLKEANKALELMESREALKV  374 (380)
T ss_dssp             CSCCCCEEECHHHHTTTTTCEEEECCCCC---HHHHHHHHHHHHTCHHHH--GGGCCEEEEGGGHHHHHHHHHHTSCSCE
T ss_pred             CCCCCCeeEchHHHHHhCCeEEEEeecCC---HHHHHHHHHHHHhhcCCe--eeEEEEEEeHHHHHHHHHHHhcCCCceE
Confidence            65 3245677767 778999999986542   4679999999999  986  5678899999999999998876543499


Q ss_pred             EeeC
Q 024295          266 LITI  269 (269)
Q Consensus       266 vl~~  269 (269)
                      ||++
T Consensus       375 vl~~  378 (380)
T 1vj0_A          375 ILYP  378 (380)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9875

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=8.2e-38  Score=265.53  Aligned_cols=247  Identities=17%  Similarity=0.249  Sum_probs=210.6

Q ss_pred             cccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG   92 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G   92 (269)
                      +-.+|+++.++++ ||+|+++..+|+|+||++++++.++++|+++++++||++++.++|||+++.+.++++++++|||+|
T Consensus        74 V~~vG~~v~~~~v-GdrV~~~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G  152 (340)
T 3gms_A           74 VENVGAFVSRELI-GKRVLPLRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNA  152 (340)
T ss_dssp             EEEECTTSCGGGT-TCEEEECSSSCSSBSEEEEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESS
T ss_pred             EEEeCCCCCCCCC-CCEEEecCCCccceeEEEcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeC
Confidence            3446889999999 999999888899999999999999999999999999999999999999998999999999999999


Q ss_pred             C-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHH
Q 024295           93 L-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS  171 (269)
Q Consensus        93 ~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~  171 (269)
                      + |++|++++|+++..|+ +|+++++++++.+.++++|+++++|+.+   .++.+.+++.+++.++|++|||+|.+ ...
T Consensus       153 a~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~~~~~~~~---~~~~~~~~~~~~~~g~Dvvid~~g~~-~~~  227 (340)
T 3gms_A          153 CGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAYVIDTST---APLYETVMELTNGIGADAAIDSIGGP-DGN  227 (340)
T ss_dssp             TTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEETTT---SCHHHHHHHHTTTSCEEEEEESSCHH-HHH
T ss_pred             CccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCcEEEeCCc---ccHHHHHHHHhCCCCCcEEEECCCCh-hHH
Confidence            7 5999999999999999 9999999999999999999999999887   88999999999888999999999987 456


Q ss_pred             HHHHHcccCCcEEEEEccCCCccccchhHhhh-hCCceEEeeeccCC-------CCCCcHHHHHHHHHCCCCCCCcceeE
Q 024295          172 EALETTKVGKGKVIVIGVGVDAMVPLNVIALA-CGGRTLKGTTFGGI-------KTKSDLPTLLDKCKNKEFKLHQLLTH  243 (269)
Q Consensus       172 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~g~~~~~~~~~~  243 (269)
                      .++++++++ |+++.+|.....  +++...+. ..++++.......+       ...+.++++++++.+|++++.. +++
T Consensus       228 ~~~~~l~~~-G~iv~~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~-i~~  303 (340)
T 3gms_A          228 ELAFSLRPN-GHFLTIGLLSGI--QVNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMK-VHS  303 (340)
T ss_dssp             HHHHTEEEE-EEEEECCCTTSC--CCCHHHHHHTSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCC-EEE
T ss_pred             HHHHHhcCC-CEEEEEeecCCC--CCCHHHhhhcccceEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcCCCcccc-ccE
Confidence            777999996 999999976542  33333333 24555544432211       1135688999999999988754 788


Q ss_pred             EeehhhHHHHHHHhcCCC-e-eeEEeeC
Q 024295          244 HVKLEEIDKAIQLLKQPD-C-VKVLITI  269 (269)
Q Consensus       244 ~~~~~~~~~a~~~~~~~~-~-~k~vl~~  269 (269)
                      +||++++++||+.+.+++ . +|+++++
T Consensus       304 ~~~l~~~~~A~~~~~~~~~~~GKvvl~~  331 (340)
T 3gms_A          304 TYELADVKAAVDVVQSAEKTKGKVFLTS  331 (340)
T ss_dssp             EEEGGGHHHHHHHHHCTTCCSSEEEEEC
T ss_pred             EEeHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence            999999999999998886 4 7999875

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=1e-37  Score=270.68  Aligned_cols=238  Identities=21%  Similarity=0.324  Sum_probs=208.6

Q ss_pred             ccccCCc------eeeeecCeEEeee---------------------------eccCcccceEeeccCceEEcCCCCCc-
Q 024295           14 GLMLDST------SRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDANYVVKVDPSIDP-   59 (269)
Q Consensus        14 ~~vg~~~------~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~-   59 (269)
                      -.+|+++      .++++ ||+|++.                           ..+|+||||++++++.++++|+++++ 
T Consensus       104 ~~vG~~v~~~~~~~~~~v-GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~  182 (404)
T 3ip1_A          104 VEAGPEAINRRTNKRFEI-GEPVCAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDGAFAEYVKVDAKYAWSLRELEGVY  182 (404)
T ss_dssp             EEECTTCEETTTTEECCT-TCEEEECSEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEECGGGBTTB
T ss_pred             EEECCCccccccCCCCCC-CCEEEECCccCCCCCHHHHCcCcccCccccccCCCCCCCCcceEEechHHeEecccccccc
Confidence            3458888      88999 9999863                           24699999999999999999998864 


Q ss_pred             -----ccccccccchhhhHHHHHHh-cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCcee
Q 024295           60 -----SDASFLSCGFTTGYGAAWKE-AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF  133 (269)
Q Consensus        60 -----~~aa~~~~~~~~a~~~l~~~-~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v  133 (269)
                           .++++++.+++|||+++... ++++++++|||+|+|++|++++|+|+..|+++|+++++++++++.++++|++++
T Consensus       183 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~v  262 (404)
T 3ip1_A          183 EGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHV  262 (404)
T ss_dssp             CTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEE
T ss_pred             ccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEE
Confidence                 34778888999999998655 489999999999999999999999999999899999999999999999999999


Q ss_pred             eCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh-hHHHHHHHHc----ccCCcEEEEEccCCCccccchhHhhhhCCce
Q 024295          134 INPDDEPNKSISELVKGITHGMGVDYCFECTGVP-SLLSEALETT----KVGKGKVIVIGVGVDAMVPLNVIALACGGRT  208 (269)
Q Consensus       134 ~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l----~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  208 (269)
                      +++++   .++.+.+++.+++.++|++||++|++ ..+..+++++    +++ |+++.+|.... ..+++...++.++++
T Consensus       263 i~~~~---~~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~  337 (404)
T 3ip1_A          263 IDPTK---ENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGIN-ATVAIVARADA-KIPLTGEVFQVRRAQ  337 (404)
T ss_dssp             ECTTT---SCHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCC-CEEEECSCCCS-CEEECHHHHHHTTCE
T ss_pred             EcCCC---CCHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCC-cEEEEeCCCCC-CCcccHHHHhccceE
Confidence            99987   88999999999888999999999987 3566777777    996 99999998764 557788888889999


Q ss_pred             EEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCC
Q 024295          209 LKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQP  260 (269)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~  260 (269)
                      +.|+....  ..++++++++++.+| +++.++++++||++++++||+.+..+
T Consensus       338 i~g~~~~~--~~~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~~G  386 (404)
T 3ip1_A          338 IVGSQGHS--GHGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQTD  386 (404)
T ss_dssp             EEECCCCC--STTHHHHHHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTTTC
T ss_pred             EEEecCCC--chHHHHHHHHHHHcC-CChhheEEEEeeHHHHHHHHHHHhCC
Confidence            99986432  246899999999999 98888999999999999999998854

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=1.4e-37  Score=264.33  Aligned_cols=244  Identities=20%  Similarity=0.301  Sum_probs=212.5

Q ss_pred             ccccCCceeeeecCeEEe-------e--------------------eeccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295           14 GLMLDSTSRMSVRGQKLY-------H--------------------IFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLS   66 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~-------~--------------------~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~   66 (269)
                      -.+|+++.++++ ||+|+       +                    +..+|+|+||++++++.++++|+++++++|++++
T Consensus        70 ~~vG~~v~~~~v-GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~  148 (343)
T 2eih_A           70 DAVGPGVEGFAP-GDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIP  148 (343)
T ss_dssp             EEECSSCCSCCT-TCEEEECCEECCSCSHHHHTTCGGGCTTCEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHHHSH
T ss_pred             EEECCCCCCCCC-CCEEEECCCCCcccchhhccCcccccccccccCcCCCccceeEEEeChHHeEECCCCCCHHHHhhch
Confidence            345889999999 99998       3                    3346999999999999999999999999999899


Q ss_pred             cchhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHH
Q 024295           67 CGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSIS  145 (269)
Q Consensus        67 ~~~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  145 (269)
                      ++++|||+++.+.++++++++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++++|+++++|+.+   .++.
T Consensus       149 ~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga~~~~d~~~---~~~~  224 (343)
T 2eih_A          149 LTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVNYTH---PDWP  224 (343)
T ss_dssp             HHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTS---TTHH
T ss_pred             hhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEcCCc---ccHH
Confidence            999999999877689999999999997 9999999999999999 9999999999999999999999998876   7788


Q ss_pred             HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHH
Q 024295          146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPT  225 (269)
Q Consensus       146 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (269)
                      +.+++.+++.++|++||++|. ..++.++++++++ |+++.+|.......+++...++.+++++.++...   ..+++++
T Consensus       225 ~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~  299 (343)
T 2eih_A          225 KEVRRLTGGKGADKVVDHTGA-LYFEGVIKATANG-GRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMA---SKSRLFP  299 (343)
T ss_dssp             HHHHHHTTTTCEEEEEESSCS-SSHHHHHHHEEEE-EEEEESSCCCSCCCCCCTTHHHHTTCEEEECCSC---CGGGHHH
T ss_pred             HHHHHHhCCCCceEEEECCCH-HHHHHHHHhhccC-CEEEEEecCCCCcCccCHHHHHhCCcEEEEecCc---cHHHHHH
Confidence            888888776689999999994 5889999999996 9999999765432346666777799999987632   2467999


Q ss_pred             HHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          226 LLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       226 ~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +++++.+|+++  +.++++||++++++||+.+.+++. +|+|+++
T Consensus       300 ~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  342 (343)
T 2eih_A          300 ILRFVEEGKLK--PVVGQVLPLEAAAEGHRLLEERRVFGKVVLQV  342 (343)
T ss_dssp             HHHHHHHTSSC--CCEEEEEEGGGHHHHHHHHHTTCSSSEEEEEC
T ss_pred             HHHHHHcCCCC--CceeEEeeHHHHHHHHHHHHcCCCceEEEEec
Confidence            99999999965  568899999999999999988765 6999875

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=7.2e-37  Score=259.57  Aligned_cols=240  Identities=22%  Similarity=0.329  Sum_probs=210.2

Q ss_pred             ccccCCceeeeecCeEEeee----------------------------eccCcccceEeeccCceEEcCCCCCccccccc
Q 024295           14 GLMLDSTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFL   65 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~   65 (269)
                      -.+|+++.++++ ||+|+..                            ..+|+||||++++++.++++|+++++++||++
T Consensus        68 ~~vG~~v~~~~v-GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l  146 (339)
T 1rjw_A           68 EEVGPGVTHLKV-GDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPI  146 (339)
T ss_dssp             EEECTTCCSCCT-TCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTSCHHHHGGG
T ss_pred             EEECCCCCcCCC-CCEEEEecCCCCCCCCchhhCcCcccCCCcceeecCCCCcceeeEEechHHEEECCCCCCHHHhhhh
Confidence            345888999999 9999742                            13589999999999999999999999999999


Q ss_pred             ccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHH
Q 024295           66 SCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSIS  145 (269)
Q Consensus        66 ~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~  145 (269)
                      +++++|||+++... +++++++|||+|+|++|++++|+++..|+ +|+++++++++.+.++++|+++++|+.+   .++.
T Consensus       147 ~~~~~ta~~~l~~~-~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~d~~~---~~~~  221 (339)
T 1rjw_A          147 FCAGVTTYKALKVT-GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPLK---EDAA  221 (339)
T ss_dssp             GTHHHHHHHHHHHH-TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTTT---SCHH
T ss_pred             hhhHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEecCCC---ccHH
Confidence            99999999998654 89999999999998899999999999999 9999999999999999999999999876   7888


Q ss_pred             HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHH
Q 024295          146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPT  225 (269)
Q Consensus       146 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (269)
                      +.+++.+ + ++|++||++|.+..++.++++++++ |+++.+|.... ..+++...++.+++++.++....   .+++++
T Consensus       222 ~~~~~~~-~-~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~  294 (339)
T 1rjw_A          222 KFMKEKV-G-GVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPPE-EMPIPIFDTVLNGIKIIGSIVGT---RKDLQE  294 (339)
T ss_dssp             HHHHHHH-S-SEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCSS-EEEEEHHHHHHTTCEEEECCSCC---HHHHHH
T ss_pred             HHHHHHh-C-CCCEEEECCCCHHHHHHHHHHhhcC-CEEEEecccCC-CCccCHHHHHhCCcEEEEeccCC---HHHHHH
Confidence            8888877 4 8999999999877889999999996 99999998764 45677777778999999876432   367999


Q ss_pred             HHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          226 LLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       226 ~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +++++.+|++++.   +++||++++++||+.+.+++. +|+|+++
T Consensus       295 ~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  336 (339)
T 1rjw_A          295 ALQFAAEGKVKTI---IEVQPLEKINEVFDRMLKGQINGRVVLTL  336 (339)
T ss_dssp             HHHHHHTTSCCCC---EEEEEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred             HHHHHHcCCCCcc---EEEEcHHHHHHHHHHHHcCCCceEEEEec
Confidence            9999999997653   478999999999999988764 7999875

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=4.2e-38  Score=272.60  Aligned_cols=247  Identities=18%  Similarity=0.204  Sum_probs=212.2

Q ss_pred             cccccCCceeeeecCeEEeeee--------------------------------------ccCcccceEeeccC--ceEE
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIF--------------------------------------SCSTWSEYMVIDAN--YVVK   52 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~--------------------------------------~~g~~a~~~~v~~~--~~~~   52 (269)
                      +-.+|+++.++++ ||+|++..                                      .+|+||||++++++  .+++
T Consensus        72 V~~vG~~v~~~~v-GDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~~~~~~~  150 (398)
T 2dph_A           72 VVEKGSDVELMDI-GDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLK  150 (398)
T ss_dssp             EEEECTTCCSCCT-TCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEESSHHHHCEE
T ss_pred             EEEECCCCCCCCC-CCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccccCCCCceeeeeEEeccccCeEEE
Confidence            3446889999999 99998521                                      25999999999987  8999


Q ss_pred             cCCCCCccc----ccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC
Q 024295           53 VDPSIDPSD----ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF  128 (269)
Q Consensus        53 vp~~~~~~~----aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~  128 (269)
                      +|+++++++    +++++++++|||+++ +.++++++++|||+|+|++|++++|+|+..|+++|+++++++++++.++++
T Consensus       151 iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  229 (398)
T 2dph_A          151 FGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA  229 (398)
T ss_dssp             CSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT
T ss_pred             CCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            999999988    888989999999998 688999999999999999999999999999998899999999999999999


Q ss_pred             CCceeeCCCCCCCccH-HHHHHhhhCCCCccEEEEccCChh--------------HHHHHHHHcccCCcEEEEEccCC--
Q 024295          129 GMTDFINPDDEPNKSI-SELVKGITHGMGVDYCFECTGVPS--------------LLSEALETTKVGKGKVIVIGVGV--  191 (269)
Q Consensus       129 g~~~v~~~~~~~~~~~-~~~i~~~~~~~~~d~v~d~~g~~~--------------~~~~~~~~l~~~~G~~v~~g~~~--  191 (269)
                      |++ ++++.+   .++ .+.+++.+++.++|++||++|.+.              .+..++++++++ |+++.+|...  
T Consensus       230 Ga~-~i~~~~---~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-G~iv~~G~~~~~  304 (398)
T 2dph_A          230 GFE-TIDLRN---SAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAG-GAIGIPGIYVGS  304 (398)
T ss_dssp             TCE-EEETTS---SSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEE-EEEECCSCCCSC
T ss_pred             CCc-EEcCCC---cchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcC-CEEEEecccccc
Confidence            996 888876   665 888988888778999999999752              689999999996 9999999762  


Q ss_pred             ----------CccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCC--CCcceeEEeehhhHHHHHHHhcC
Q 024295          192 ----------DAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFK--LHQLLTHHVKLEEIDKAIQLLKQ  259 (269)
Q Consensus       192 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~--~~~~~~~~~~~~~~~~a~~~~~~  259 (269)
                                ....+++...++.+++++.++...   .++.++++++++.+|+++  +.++++++||++++++||+.+.+
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~---~~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~~~A~~~~~~  381 (398)
T 2dph_A          305 DPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAP---VTNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDK  381 (398)
T ss_dssp             CSSCSSHHHHTTEEEEEHHHHHHTTCEEECSSCC---GGGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTHHHHHHHHHT
T ss_pred             ccccccccccCCcccccHHHHhhcCCEEEEeccC---cHHHHHHHHHHHHcCCCCccchhhEEEEEcHHHHHHHHHHHhc
Confidence                      123456666777899999886532   246799999999999988  77778899999999999999987


Q ss_pred             CCeeeEEeeC
Q 024295          260 PDCVKVLITI  269 (269)
Q Consensus       260 ~~~~k~vl~~  269 (269)
                      ++.+|+||++
T Consensus       382 ~~~gKvvv~~  391 (398)
T 2dph_A          382 GSPAKFVIDP  391 (398)
T ss_dssp             TCSCEEEECT
T ss_pred             CCceEEEEec
Confidence            7669999874

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=1.3e-37  Score=273.84  Aligned_cols=247  Identities=18%  Similarity=0.176  Sum_probs=212.6

Q ss_pred             ccccCCceeeeecCeEEeeee---------------------------ccCcccceEeeccCceEEcCCCCCcccccccc
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLS   66 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~   66 (269)
                      -.+|+++.++++ ||+|++..                           .+|+||||+++++++++++|+++++++||+++
T Consensus       130 v~vG~~v~~~~v-GdrV~~~~~~c~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~  208 (456)
T 3krt_A          130 LRTGPGVNAWQA-GDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPG  208 (456)
T ss_dssp             EEECTTCCSCCT-TCEEEECCEECCCCSGGGTTSGGGCTTCEETTTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHSSH
T ss_pred             EEECCCCCCCCC-CCEEEEeCCcccccccccccccccCccccccccCCCCCcccceEEechHHeeECCCCCCHHHHHHhh
Confidence            345889999999 99998632                           14999999999999999999999999999999


Q ss_pred             cchhhhHHHHHHh--cCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCC--
Q 024295           67 CGFTTGYGAAWKE--AKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPN--  141 (269)
Q Consensus        67 ~~~~~a~~~l~~~--~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~--  141 (269)
                      ++++|||+++...  ++++++++|||+|+ |++|++++|+|+..|+ +|+++++++++++.++++|++.++++.+.+.  
T Consensus       209 ~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~  287 (456)
T 3krt_A          209 LVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRF  287 (456)
T ss_dssp             HHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCCEEEETTTTTCCS
T ss_pred             hHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCcEEEecCcCcccc
Confidence            9999999998654  78999999999997 9999999999999999 8999989999999999999999999876110  


Q ss_pred             ------------ccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceE
Q 024295          142 ------------KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTL  209 (269)
Q Consensus       142 ------------~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  209 (269)
                                  ..+.+.+++++++.++|+|||++|+ ..+..++++++++ |+++.+|.......+++...++.+++++
T Consensus       288 ~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~-~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~i  365 (456)
T 3krt_A          288 WKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGR-ETFGASVFVTRKG-GTITTCASTSGYMHEYDNRYLWMSLKRI  365 (456)
T ss_dssp             EEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCH-HHHHHHHHHEEEE-EEEEESCCTTCSEEEEEHHHHHHTTCEE
T ss_pred             cccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCc-hhHHHHHHHhhCC-cEEEEEecCCCcccccCHHHHHhcCeEE
Confidence                        1235788888887899999999998 4889999999996 9999999776545567777788899999


Q ss_pred             EeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          210 KGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      .|+....+   +++.++++++.+|+++  +.++++||++++++||+.+.+++. +|+||.+
T Consensus       366 ~g~~~~~~---~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~eA~~~l~~~~~~GKvvv~~  421 (456)
T 3krt_A          366 IGSHFANY---REAWEANRLIAKGRIH--PTLSKVYSLEDTGQAAYDVHRNLHQGKVGVLC  421 (456)
T ss_dssp             EECCSCCH---HHHHHHHHHHHTTSSC--CCEEEEEEGGGHHHHHHHHHTTCSSSEEEEES
T ss_pred             EEeccCCH---HHHHHHHHHHHcCCcc--cceeEEEcHHHHHHHHHHHHhCCCCCcEEEEe
Confidence            99876543   5677899999999965  568899999999999999988776 6998763

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=9.3e-37  Score=259.56  Aligned_cols=243  Identities=19%  Similarity=0.187  Sum_probs=208.5

Q ss_pred             ccccCCceeeeecCeEEeeee---ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCC------C
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVE------K   84 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~------~   84 (269)
                      -.+|+++.++++ ||+|++..   .+|+|+||++++++.++++|+++++++|++++++++|||+++.+.++++      +
T Consensus        72 ~~vG~~v~~~~~-GdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~  150 (346)
T 3fbg_A           72 ESVGNEVTMFNQ-GDIVYYSGSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENE  150 (346)
T ss_dssp             EEECTTCCSCCT-TCEEEECCCTTSCCSSBSEEEEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHT
T ss_pred             EEeCCCCCcCCC-CCEEEEcCCCCCCcceeEEEEEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCC
Confidence            446889999999 99998753   3699999999999999999999999999999999999999998899998      9


Q ss_pred             CCeEEEEc-CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           85 GSSVAVLG-LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        85 ~~~vlI~G-~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      +++|||+| +|++|++++|+++..|+ +|+++++++++.+.++++|++++++++    +++.+.+++. .+.++|++|||
T Consensus       151 g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~----~~~~~~~~~~-~~~g~Dvv~d~  224 (346)
T 3fbg_A          151 GKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKMGADIVLNHK----ESLLNQFKTQ-GIELVDYVFCT  224 (346)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHHTCSEEECTT----SCHHHHHHHH-TCCCEEEEEES
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEECC----ccHHHHHHHh-CCCCccEEEEC
Confidence            99999995 69999999999999999 999999999999999999999999986    4578888887 45599999999


Q ss_pred             cCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC---CC------CCcHHHHHHHHHCCC
Q 024295          164 TGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI---KT------KSDLPTLLDKCKNKE  234 (269)
Q Consensus       164 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~l~~~g~  234 (269)
                      +|++..++.++++++++ |+++.++...   .+++...+..+++++.++.....   ..      .+.++++++++++|+
T Consensus       225 ~g~~~~~~~~~~~l~~~-G~iv~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  300 (346)
T 3fbg_A          225 FNTDMYYDDMIQLVKPR-GHIATIVAFE---NDQDLNALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNI  300 (346)
T ss_dssp             SCHHHHHHHHHHHEEEE-EEEEESSCCS---SCBCGGGGTTTTCEEEECCTTHHHHTTCTTTHHHHHHHHHHHHHHHTTS
T ss_pred             CCchHHHHHHHHHhccC-CEEEEECCCC---CCCccccccccceEEEEEEEecccccchhhHHHHHHHHHHHHHHHHCCC
Confidence            99887789999999996 9999987533   34555667778999988654321   00      245788999999999


Q ss_pred             CCCCcceeEEe---ehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          235 FKLHQLLTHHV---KLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       235 ~~~~~~~~~~~---~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++  +.++++|   |++++++||+.+.+++. +|+|+++
T Consensus       301 l~--~~i~~~~~~~~l~~~~~A~~~~~~g~~~GKvvl~~  337 (346)
T 3fbg_A          301 YQ--PTTTKVIEGLTTENIYQAHQILESNTMIGKLVINL  337 (346)
T ss_dssp             SC--CCEEEEEESCCHHHHHHHHHHHHTTCCCSEEEEEC
T ss_pred             EE--CCccceecCCCHHHHHHHHHHHhcCCcceEEEEec
Confidence            65  4577787   99999999999998876 6999874

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=9.3e-37  Score=261.77  Aligned_cols=247  Identities=15%  Similarity=0.172  Sum_probs=207.3

Q ss_pred             ccccCCceeeeecCeEEeeee--------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHh-cCC--
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF--------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKE-AKV--   82 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~--------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~-~~~--   82 (269)
                      -.+|+++.++++ ||+|++..        .+|+||||++++++.++++|+++++++|+++++++.|||+++.+. .++  
T Consensus        75 ~~vG~~v~~~~~-GdrV~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~  153 (371)
T 3gqv_A           75 VAVGSDVTHIQV-GDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPS  153 (371)
T ss_dssp             EEECTTCCSCCT-TCEEEEECCTTCTTCTTCCSSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCC
T ss_pred             EEeCCCCCCCCC-CCEEEEeccCCCCCCCCCCcCcCeEEEchhheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCC
Confidence            346889999999 99999764        359999999999999999999999999999999999999999777 553  


Q ss_pred             ---------CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhh
Q 024295           83 ---------EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        83 ---------~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~  152 (269)
                               +++++|||+|+ |++|++++|+|+..|+ +|+++. ++++++.++++|+++++|+++   .++.+.+++++
T Consensus       154 ~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~lGa~~vi~~~~---~~~~~~v~~~t  228 (371)
T 3gqv_A          154 PSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAKSRGAEEVFDYRA---PNLAQTIRTYT  228 (371)
T ss_dssp             SSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHHTTCSEEEETTS---TTHHHHHHHHT
T ss_pred             CccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHHHcCCcEEEECCC---chHHHHHHHHc
Confidence                     89999999997 8999999999999999 899887 789999999999999999987   88999999999


Q ss_pred             CCCCccEEEEccCChhHHHHHHHHc-ccCCcEEEEEccCCC-----ccccch---hHhhhhCCceEEeeeccCCCC----
Q 024295          153 HGMGVDYCFECTGVPSLLSEALETT-KVGKGKVIVIGVGVD-----AMVPLN---VIALACGGRTLKGTTFGGIKT----  219 (269)
Q Consensus       153 ~~~~~d~v~d~~g~~~~~~~~~~~l-~~~~G~~v~~g~~~~-----~~~~~~---~~~~~~~~~~~~~~~~~~~~~----  219 (269)
                      ++ ++|++||++|++..++.+++++ +++ |+++.+|....     ...+.+   ...++.+++++.++.......    
T Consensus       229 ~g-~~d~v~d~~g~~~~~~~~~~~l~~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~  306 (371)
T 3gqv_A          229 KN-NLRYALDCITNVESTTFCFAAIGRAG-GHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQ  306 (371)
T ss_dssp             TT-CCCEEEESSCSHHHHHHHHHHSCTTC-EEEEESSCCCC---CCSCEEEEECCGGGGGTSCBSCSTTTCBCCCHHHHH
T ss_pred             cC-CccEEEECCCchHHHHHHHHHhhcCC-CEEEEEecCccccccccccceeeeeeeeeccccccccccccccccHHHHH
Confidence            88 6999999999987899999999 586 99999995432     111111   234566888888775332211    


Q ss_pred             --CCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-e-eEEee
Q 024295          220 --KSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-V-KVLIT  268 (269)
Q Consensus       220 --~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~-k~vl~  268 (269)
                        .+.++++++++.+|++++.+.+++.||++++++||+.+.+++. + |+|++
T Consensus       307 ~~~~~~~~~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~~g~~~Gkkvvv~  359 (371)
T 3gqv_A          307 FGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGELSGEKLVVR  359 (371)
T ss_dssp             HHHHHHHHHHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHHTTCCSSCEEEEE
T ss_pred             HHHHHHHHHHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHHcCCCceEEEEEE
Confidence              1224578899999999999888888999999999999988765 4 67765

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=4.7e-38  Score=267.92  Aligned_cols=245  Identities=13%  Similarity=0.113  Sum_probs=206.4

Q ss_pred             ccccCCc-eeeeecCeEEeeee---ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCC-CeE
Q 024295           14 GLMLDST-SRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKG-SSV   88 (269)
Q Consensus        14 ~~vg~~~-~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~-~~v   88 (269)
                      -.+|+++ .++++ ||+|++..   .+|+|+||++++++.++++|+++++++||++++.++|||++ .+.++ +++ ++|
T Consensus        92 ~~vG~~v~~~~~v-GdrV~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~-~~~~~-~~g~~~v  168 (349)
T 3pi7_A           92 VAGGDEPYAKSLV-GKRVAFATGLSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAM-FDIVK-QEGEKAF  168 (349)
T ss_dssp             EEECSSHHHHHHT-TCEEEEECTTSSCCSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHH-HHHHH-HHCCSEE
T ss_pred             EEECCCccCCCCC-CCEEEEeccCCCCccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHHH-HHHHh-hCCCCEE
Confidence            3458888 88999 99999765   56999999999999999999999999999999999999965 45566 666 788


Q ss_pred             EEEc-CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh
Q 024295           89 AVLG-LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP  167 (269)
Q Consensus        89 lI~G-~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~  167 (269)
                      ||+| +|++|++++|+++..|+ +|+++++++++++.++++|+++++|+++   .++.+.+++.+++.++|++|||+|.+
T Consensus       169 li~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~---~~~~~~v~~~~~~~g~D~vid~~g~~  244 (349)
T 3pi7_A          169 VMTAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLKDIGAAHVLNEKA---PDFEATLREVMKAEQPRIFLDAVTGP  244 (349)
T ss_dssp             EESSTTSHHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHTCSEEEETTS---TTHHHHHHHHHHHHCCCEEEESSCHH
T ss_pred             EEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEECCc---HHHHHHHHHHhcCCCCcEEEECCCCh
Confidence            8885 69999999999999999 9999999999999999999999999987   88999999988767999999999987


Q ss_pred             hHHHHHHHHcccCCcEEEEEccCCCccccchh-HhhhhCCceEEeeeccCCCC------CCcHHHHHHHHHCCCCCCCcc
Q 024295          168 SLLSEALETTKVGKGKVIVIGVGVDAMVPLNV-IALACGGRTLKGTTFGGIKT------KSDLPTLLDKCKNKEFKLHQL  240 (269)
Q Consensus       168 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~g~~~~~~~  240 (269)
                       .+..++++++++ |+++.+|.......+++. ..++.+++++.+++...+..      .+.++++++++.+|+++  +.
T Consensus       245 -~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~  320 (349)
T 3pi7_A          245 -LASAIFNAMPKR-ARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRWS--TD  320 (349)
T ss_dssp             -HHHHHHHHSCTT-CEEEECCCSCCSCCCCSCTHHHHHSCCEEEECCHHHHHHHTHHHHHHHHHHC-CTTTTSSCC--C-
T ss_pred             -hHHHHHhhhcCC-CEEEEEeccCCCCCCCCchhhhhccccEEEEEEehhhhhhCcHHHHHHHHHHHHHHHcCCcc--cc
Confidence             568999999996 999999976544455666 67778999999987643211      24677888899999964  56


Q ss_pred             eeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          241 LTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       241 ~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      ++++||++++++||+.+.++..+|+||++
T Consensus       321 i~~~~~l~~~~~A~~~~~~~~~gKvvl~p  349 (349)
T 3pi7_A          321 VTAVVPLAEAIAWVPAELTKPNGKVFIRP  349 (349)
T ss_dssp             CCEEEEHHHHHHHHHHHHTSSSSCEEEEC
T ss_pred             cceEEcHHHHHHHHHHHhCCCCceEEEeC
Confidence            88999999999999977666668999975

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=5.4e-37  Score=259.83  Aligned_cols=247  Identities=21%  Similarity=0.261  Sum_probs=211.8

Q ss_pred             ccccCCceeeeecCeEEeeeec-cCcccceEeeccCceEEcCCCCCccc--ccccccchhhhHHHHHHhcCCCCCCeEEE
Q 024295           14 GLMLDSTSRMSVRGQKLYHIFS-CSTWSEYMVIDANYVVKVDPSIDPSD--ASFLSCGFTTGYGAAWKEAKVEKGSSVAV   90 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~~-~g~~a~~~~v~~~~~~~vp~~~~~~~--aa~~~~~~~~a~~~l~~~~~~~~~~~vlI   90 (269)
                      -.+|+++.++++ ||+|+.... +|+|+||++++++.++++|+++++++  |++++++++|||+++.+.++++++++|||
T Consensus        73 ~~vG~~v~~~~~-GdrV~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV  151 (333)
T 1wly_A           73 EEVGPGVTDFTV-GERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLI  151 (333)
T ss_dssp             EEECTTCCSCCT-TCEEEECSSSCCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEE
T ss_pred             EEECCCCCCCCC-CCEEEEecCCCCcceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEE
Confidence            345889999999 999976553 69999999999999999999999999  89999999999999987889999999999


Q ss_pred             EcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhH
Q 024295           91 LGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  169 (269)
Q Consensus        91 ~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  169 (269)
                      +|+ |++|++++|+++..|+ +|+++++++++.+.++++|+++++++.+   .++.+.+.+.+++.++|++||++|. ..
T Consensus       152 ~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~~~~~d~~~---~~~~~~i~~~~~~~~~d~vi~~~g~-~~  226 (333)
T 1wly_A          152 HAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCHHTINYST---QDFAEVVREITGGKGVDVVYDSIGK-DT  226 (333)
T ss_dssp             TTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHHTTCCEEEEEECSCT-TT
T ss_pred             ECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEECCC---HHHHHHHHHHhCCCCCeEEEECCcH-HH
Confidence            995 9999999999999999 9999999999999999999999998876   7888888888876689999999998 47


Q ss_pred             HHHHHHHcccCCcEEEEEccCCCccccchhH-hhhhCC--ceEEeeeccCCCC----CCcHHHHHHHHHCCCCCCCccee
Q 024295          170 LSEALETTKVGKGKVIVIGVGVDAMVPLNVI-ALACGG--RTLKGTTFGGIKT----KSDLPTLLDKCKNKEFKLHQLLT  242 (269)
Q Consensus       170 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~l~~~g~~~~~~~~~  242 (269)
                      ++.++++++++ |+++.+|.......+++.. .++.++  +++.|++...+..    ++.++++++++.+|+++  +.++
T Consensus       227 ~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~  303 (333)
T 1wly_A          227 LQKSLDCLRPR-GMCAAYGHASGVADPIRVVEDLGVRGSLFITRPALWHYMSNRSEIDEGSKCLFDAVKAGVLH--SSVA  303 (333)
T ss_dssp             HHHHHHTEEEE-EEEEECCCTTCCCCCCCHHHHTTTTTSCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSCC--CCEE
T ss_pred             HHHHHHhhccC-CEEEEEecCCCCcCCCChhHhhhhcCCcEEEEEeehhhccCHHHHHHHHHHHHHHHHCCCcC--CCcc
Confidence            89999999996 9999999765333456666 666788  8998875422111    13588999999999965  5688


Q ss_pred             EEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          243 HHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       243 ~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++||++++++||+.+.+++. +|+|+++
T Consensus       304 ~~~~l~~~~~A~~~~~~~~~~gKvvi~~  331 (333)
T 1wly_A          304 KTFPLREAAAAHKYMGGRQTIGSIVLLP  331 (333)
T ss_dssp             EEEEGGGHHHHHHHHHHCSCCSEEEEET
T ss_pred             eEEeHHHHHHHHHHHHcCCCceEEEEEe
Confidence            99999999999999887664 6999874

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.3e-36  Score=259.01  Aligned_cols=244  Identities=22%  Similarity=0.279  Sum_probs=208.1

Q ss_pred             ccccCCceeeeecCeEEeeeec-cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295           14 GLMLDSTSRMSVRGQKLYHIFS-CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG   92 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~~-~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G   92 (269)
                      -.+|+++.++++ ||+|++... +|+||||++++++.++++|+++++++||+++++++|||+++.+.++++++++|||+|
T Consensus       100 ~~vG~~v~~~~v-GdrV~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~G  178 (351)
T 1yb5_A          100 EAVGDNASAFKK-GDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHG  178 (351)
T ss_dssp             EEECTTCTTCCT-TCEEEESCCSSCSSBSEEEEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEET
T ss_pred             EEECCCCCCCCC-CCEEEEeCCCCCcceeEEEECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEEC
Confidence            445889999999 999987653 599999999999999999999999999999999999999998889999999999999


Q ss_pred             C-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHH
Q 024295           93 L-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS  171 (269)
Q Consensus        93 ~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~  171 (269)
                      + |++|++++|+++..|+ +|+++++++++.+.++++|++.++++.+   .++.+.+.+.+++.++|++||++|.+ .+.
T Consensus       179 asggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~d~~~---~~~~~~~~~~~~~~~~D~vi~~~G~~-~~~  253 (351)
T 1yb5_A          179 ASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFNHRE---VNYIDKIKKYVGEKGIDIIIEMLANV-NLS  253 (351)
T ss_dssp             CSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS---TTHHHHHHHHHCTTCEEEEEESCHHH-HHH
T ss_pred             CCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCCCEEEeCCC---chHHHHHHHHcCCCCcEEEEECCChH-HHH
Confidence            6 9999999999999999 9999999999999999999999999876   78888888888777899999999876 778


Q ss_pred             HHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcH----HHHHHHHHCCCCCCCcceeEEeeh
Q 024295          172 EALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDL----PTLLDKCKNKEFKLHQLLTHHVKL  247 (269)
Q Consensus       172 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~g~~~~~~~~~~~~~~  247 (269)
                      .++++++++ |+++.+|...  ..+++...++.+++++.++...... .+++    +.+.+++.+|++  +++++++||+
T Consensus       254 ~~~~~l~~~-G~iv~~g~~~--~~~~~~~~~~~~~~~i~g~~~~~~~-~~~~~~~~~~l~~~~~~g~l--~~~i~~~~~l  327 (351)
T 1yb5_A          254 KDLSLLSHG-GRVIVVGSRG--TIEINPRDTMAKESSIIGVTLFSST-KEEFQQYAAALQAGMEIGWL--KPVIGSQYPL  327 (351)
T ss_dssp             HHHHHEEEE-EEEEECCCCS--CEEECTHHHHTTTCEEEECCGGGCC-HHHHHHHHHHHHHHHHHTCC--CCCEEEEEEG
T ss_pred             HHHHhccCC-CEEEEEecCC--CCccCHHHHHhCCcEEEEEEeecCC-HHHHHHHHHHHHHHHHCCCc--cCccceEEcH
Confidence            999999996 9999999653  3456666777899999998643321 1233    445667778885  4568899999


Q ss_pred             hhHHHHHHH-hcCCC-eeeEEeeC
Q 024295          248 EEIDKAIQL-LKQPD-CVKVLITI  269 (269)
Q Consensus       248 ~~~~~a~~~-~~~~~-~~k~vl~~  269 (269)
                      +++++||+. ++++. .+|+|+++
T Consensus       328 ~~~~~A~~~~~~~~~~~gKvvi~~  351 (351)
T 1yb5_A          328 EKVAEAHENIIHGSGATGKMILLL  351 (351)
T ss_dssp             GGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             HHHHHHHHHHHHhCCCCeEEEEeC
Confidence            999999998 66544 47999875

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.3e-37  Score=263.61  Aligned_cols=244  Identities=20%  Similarity=0.308  Sum_probs=201.2

Q ss_pred             ccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC
Q 024295           14 GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL   93 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~   93 (269)
                      -.+|+++.++++ ||+|+++..+|+|+||++++++.++++|+++++++|++++++++|||+++.+.++++++++|||+|+
T Consensus        73 ~~vG~~v~~~~~-GdrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga  151 (349)
T 4a27_A           73 EALGDSVKGYEI-GDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSA  151 (349)
T ss_dssp             EEECTTCCSCCT-TCEEEEECSSCCSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESST
T ss_pred             EEeCCCCCCCCC-CCEEEEecCCCcceEEEEecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence            346889999999 9999999888999999999999999999999999999999999999999988899999999999997


Q ss_pred             -ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHH
Q 024295           94 -GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSE  172 (269)
Q Consensus        94 -g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~  172 (269)
                       |++|++++|+|+..|..+|++++ ++++.+.++ +|++++++ .+   .++.+.+++.+++ ++|++|||+|++ .+..
T Consensus       152 ~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~~~-~~---~~~~~~~~~~~~~-g~Dvv~d~~g~~-~~~~  223 (349)
T 4a27_A          152 GGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHLFD-RN---ADYVQEVKRISAE-GVDIVLDCLCGD-NTGK  223 (349)
T ss_dssp             TSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEEEE-TT---SCHHHHHHHHCTT-CEEEEEEECC-------
T ss_pred             CcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEEEc-CC---ccHHHHHHHhcCC-CceEEEECCCch-hHHH
Confidence             99999999999999655899888 678888888 99999998 55   7899999998765 999999999987 5589


Q ss_pred             HHHHcccCCcEEEEEccCCC---c-------------cccchhHhhhhCCceEEeeeccCCC---C-----CCcHHHHHH
Q 024295          173 ALETTKVGKGKVIVIGVGVD---A-------------MVPLNVIALACGGRTLKGTTFGGIK---T-----KSDLPTLLD  228 (269)
Q Consensus       173 ~~~~l~~~~G~~v~~g~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~  228 (269)
                      ++++++++ |+++.+|....   .             ..+++...++.++.++.++....+.   .     ++.++++++
T Consensus       224 ~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~  302 (349)
T 4a27_A          224 GLSLLKPL-GTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIG  302 (349)
T ss_dssp             -CTTEEEE-EEEEEEC-------------------------CHHHHHHHTCEEEEECHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHhhcC-CEEEEECCCcccccccccccccccccccccccCHHHHhhcCceEEEEeehheeccccchHHHHHHHHHHHH
Confidence            99999996 99999997532   0             1235556677789999998753321   1     356889999


Q ss_pred             HHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          229 KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       229 l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++.+|+++  +.++++||++++++||+.+.+++. +|+||++
T Consensus       303 l~~~g~l~--~~i~~~~~l~~~~~A~~~l~~~~~~GKvvi~~  342 (349)
T 4a27_A          303 LYNQKKIK--PVVDSLWALEEVKEAMQRIHDRGNIGKLILDV  342 (349)
T ss_dssp             HHHTTSCC--CCEEEEECGGGHHHHHHHHHTTCCSSEEEEET
T ss_pred             HHHCCCcc--ccccceECHHHHHHHHHHHHhCCCCceEEEec
Confidence            99999964  568899999999999999988776 6999975

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=2e-36  Score=256.62  Aligned_cols=243  Identities=19%  Similarity=0.247  Sum_probs=209.3

Q ss_pred             ccc-cCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccc--cccccchhhhHHHHHHhcCCCCCCeEEE
Q 024295           14 GLM-LDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDA--SFLSCGFTTGYGAAWKEAKVEKGSSVAV   90 (269)
Q Consensus        14 ~~v-g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~a--a~~~~~~~~a~~~l~~~~~~~~~~~vlI   90 (269)
                      |+| ..++.++++ ||+|++.   |+|+||++++++.++++|+++++.++  +.++++++|||+++.+.++++++++|||
T Consensus        80 G~V~~~~v~~~~v-GdrV~~~---G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI  155 (336)
T 4b7c_A           80 GKVLVSKHPGFQA-GDYVNGA---LGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVI  155 (336)
T ss_dssp             EEEEEECSTTCCT-TCEEEEE---CCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEE
T ss_pred             EEEEecCCCCCCC-CCEEecc---CCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEE
Confidence            443 347888999 9999864   89999999999999999999987776  7788999999999988999999999999


Q ss_pred             EcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChh
Q 024295           91 LGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS  168 (269)
Q Consensus        91 ~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~  168 (269)
                      +|+ |++|++++|+++..|+ +|+++++++++.+.+ +++|+++++|+.+   .++.+.+.+.+++ ++|++||++|.+ 
T Consensus       156 ~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~-~~d~vi~~~g~~-  229 (336)
T 4b7c_A          156 SGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEELGFDGAIDYKN---EDLAAGLKRECPK-GIDVFFDNVGGE-  229 (336)
T ss_dssp             SSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCSEEEETTT---SCHHHHHHHHCTT-CEEEEEESSCHH-
T ss_pred             ECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCEEEECCC---HHHHHHHHHhcCC-CceEEEECCCcc-
Confidence            997 9999999999999999 999999999999999 8899999999887   8899999998865 999999999975 


Q ss_pred             HHHHHHHHcccCCcEEEEEccCCC------ccccchhHhhhhCCceEEeeeccCCCC--CCcHHHHHHHHHCCCCCCCcc
Q 024295          169 LLSEALETTKVGKGKVIVIGVGVD------AMVPLNVIALACGGRTLKGTTFGGIKT--KSDLPTLLDKCKNKEFKLHQL  240 (269)
Q Consensus       169 ~~~~~~~~l~~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~~~~  240 (269)
                      .+..++++++++ |+++.+|....      ...+++...++.+++++.++....+..  .+.++++++++.+|++++.  
T Consensus       230 ~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--  306 (336)
T 4b7c_A          230 ILDTVLTRIAFK-ARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSR--  306 (336)
T ss_dssp             HHHHHHTTEEEE-EEEEECCCGGGGC------CCTTTTHHHHTTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCC--
T ss_pred             hHHHHHHHHhhC-CEEEEEeecccccCCcccccchhHHHHHhCCcEEEEEEhhhhhhhhHHHHHHHHHHHHCCCcccc--
Confidence            889999999996 99999997652      123566667778999999987654321  2568899999999998776  


Q ss_pred             eeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          241 LTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       241 ~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +..++|++++++||+.+.+++. +|+||++
T Consensus       307 ~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  336 (336)
T 4b7c_A          307 EDIVEGLETFPETLLKLFSGENFGKLVLKV  336 (336)
T ss_dssp             EEEEECGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             eeeecCHHHHHHHHHHHHcCCCCceEEEeC
Confidence            4456899999999999988876 6999975

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=5.8e-37  Score=269.36  Aligned_cols=244  Identities=17%  Similarity=0.161  Sum_probs=210.0

Q ss_pred             cccccCCceeeeecCeEEeeeec---------------------------cCcccceEeeccCceEEcCCCCCccccccc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIFS---------------------------CSTWSEYMVIDANYVVKVDPSIDPSDASFL   65 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~~---------------------------~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~   65 (269)
                      +-.+|+++.++++ ||+|++...                           +|+||||+++++++++++|+++++++|+++
T Consensus       121 V~~vG~~V~~~~v-GDrV~~~~~~~~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~~v~~~~~~~iP~~ls~~~aA~l  199 (447)
T 4a0s_A          121 VVRTGIGVRRWKP-GDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVS  199 (447)
T ss_dssp             EEEECTTCCSCCT-TCEEEECSEECCTTSGGGGTCTTCSTTCEETTTTSSSCSSBSEEEEEGGGEEECCTTSCHHHHHTS
T ss_pred             EEEECCCCCCCCC-CCEEEEecCcCcCcccccccccccccccccccccCCCCceeeeeecCHHHcEECCCCCCHHHHHHh
Confidence            3446889999999 999986431                           499999999999999999999999999999


Q ss_pred             ccchhhhHHHHHH--hcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCc
Q 024295           66 SCGFTTGYGAAWK--EAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNK  142 (269)
Q Consensus        66 ~~~~~~a~~~l~~--~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  142 (269)
                      +++++|||+++..  .++++++++|||+|+ |++|++++|+++..|+ +|+++++++++++.++++|+++++++.+   .
T Consensus       200 ~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~---~  275 (447)
T 4a0s_A          200 PLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAVRALGCDLVINRAE---L  275 (447)
T ss_dssp             HHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCCEEEHHH---H
T ss_pred             HHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEeccc---c
Confidence            9999999999864  489999999999997 9999999999999999 8999999999999999999999988654   2


Q ss_pred             c------------------HHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhh
Q 024295          143 S------------------ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALAC  204 (269)
Q Consensus       143 ~------------------~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~  204 (269)
                      +                  +.+.+++.+ +.++|++||++|.+ .+..++++++++ |+++.+|...+...+++...++.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~-g~g~Dvvid~~G~~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~  352 (447)
T 4a0s_A          276 GITDDIADDPRRVVETGRKLAKLVVEKA-GREPDIVFEHTGRV-TFGLSVIVARRG-GTVVTCGSSSGYLHTFDNRYLWM  352 (447)
T ss_dssp             TCCTTGGGCHHHHHHHHHHHHHHHHHHH-SSCCSEEEECSCHH-HHHHHHHHSCTT-CEEEESCCTTCSEEEEEHHHHHH
T ss_pred             cccccccccccccchhhhHHHHHHHHHh-CCCceEEEECCCch-HHHHHHHHHhcC-CEEEEEecCCCcccccCHHHHHh
Confidence            2                  367788888 55999999999985 789999999996 99999997764455677777788


Q ss_pred             CCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          205 GGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +++++.|+....   .+++.++++++.+|+++  ++++++||++++++||+.+.+++. +|+||.+
T Consensus       353 ~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~GKvvv~~  413 (447)
T 4a0s_A          353 KLKKIVGSHGAN---HEEQQATNRLFESGAVV--PAMSAVYPLAEAAEACRVVQTSRQVGKVAVLC  413 (447)
T ss_dssp             TTCEEEECCSCC---HHHHHHHHHHHHTTSSC--CCEEEEEEGGGHHHHHHHHHTTCCSSEEEEES
T ss_pred             CCCEEEecCCCC---HHHHHHHHHHHHcCCcc--cceeEEEcHHHHHHHHHHHhcCCCceEEEEEe
Confidence            999999987544   25688999999999965  568899999999999999988766 6998763

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.3e-37  Score=265.82  Aligned_cols=248  Identities=20%  Similarity=0.206  Sum_probs=206.9

Q ss_pred             cccccCCceeeeecCeEEeee-------------------------------------eccCcccceEeeccC--ceEEc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHI-------------------------------------FSCSTWSEYMVIDAN--YVVKV   53 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~-------------------------------------~~~g~~a~~~~v~~~--~~~~v   53 (269)
                      +-.+|+++.++++ ||+|+..                                     ..+|+||||+++++.  .++++
T Consensus        73 V~~vG~~v~~~~v-GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~~~~~  151 (398)
T 1kol_A           73 VIEKGRDVENLQI-GDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKL  151 (398)
T ss_dssp             EEEECTTCCSCCT-TCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEEC
T ss_pred             EEEECCCCCcCCC-CCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccCCCCCceeeeEEEecchhCeEEEC
Confidence            3446889999999 9999731                                     124899999999986  89999


Q ss_pred             CCCCCccc----ccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC
Q 024295           54 DPSIDPSD----ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG  129 (269)
Q Consensus        54 p~~~~~~~----aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g  129 (269)
                      |+++++++    +++++++++|||+++. .++++++++|||+|+|++|++++|+||.+|+++|+++++++++++.++++|
T Consensus       152 P~~~~~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lG  230 (398)
T 1kol_A          152 PDRDKAMEKIRDLTCLSDILPTGYHGAV-TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG  230 (398)
T ss_dssp             SCHHHHHHTHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT
T ss_pred             CCCcchhhhcccccccccHHHHHHHHHH-HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcC
Confidence            99999887    6888889999999985 789999999999999999999999999999978999999999999999999


Q ss_pred             CceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh---------------hHHHHHHHHcccCCcEEEEEccCC-Cc
Q 024295          130 MTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP---------------SLLSEALETTKVGKGKVIVIGVGV-DA  193 (269)
Q Consensus       130 ~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~---------------~~~~~~~~~l~~~~G~~v~~g~~~-~~  193 (269)
                      ++ ++++.+  .+++.+.+++.+++.++|+|||++|.+               ..+..++++++++ |+++.+|... ..
T Consensus       231 a~-~i~~~~--~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~~~~  306 (398)
T 1kol_A          231 FE-IADLSL--DTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPGLYVTED  306 (398)
T ss_dssp             CE-EEETTS--SSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEECSCCCSCC
T ss_pred             Cc-EEccCC--cchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcC-CEEEEeccccCCc
Confidence            97 777764  133888899988877999999999975               2688999999996 9999999652 11


Q ss_pred             -----------cccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCC-CCcceeEEeehhhHHHHHHHhcCCC
Q 024295          194 -----------MVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFK-LHQLLTHHVKLEEIDKAIQLLKQPD  261 (269)
Q Consensus       194 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~-~~~~~~~~~~~~~~~~a~~~~~~~~  261 (269)
                                 ..+++...++.+++++.++...   ..+.++++++++.+|+++ .+++++++||++++++||+.+.+++
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~~A~~~~~~~~  383 (398)
T 1kol_A          307 PGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQTP---VMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGV  383 (398)
T ss_dssp             TTCSSHHHHTTCCCCCHHHHHHTTCEEEESSCC---HHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHHHHHHHHHHTC
T ss_pred             ccccccccccccccccHHHHhhcccEEEecccC---hHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHHHHHHHHhCCC
Confidence                       2345566677799999876421   235678899999999987 3456789999999999999988766


Q ss_pred             eeeEEeeC
Q 024295          262 CVKVLITI  269 (269)
Q Consensus       262 ~~k~vl~~  269 (269)
                      .+|+||++
T Consensus       384 ~gKvvi~~  391 (398)
T 1kol_A          384 PKKFVIDP  391 (398)
T ss_dssp             SCEEEECT
T ss_pred             ceEEEEEe
Confidence            68999875

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=8.8e-37  Score=259.36  Aligned_cols=240  Identities=20%  Similarity=0.223  Sum_probs=206.6

Q ss_pred             ccccCCceeeeecCeEEeeee-----ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeE
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF-----SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSV   88 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~-----~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~v   88 (269)
                      -.+|+++.++++ ||+|++..     .+|+|+||++++++.++++|+++++++|++++++++|||+++.+.++++++++|
T Consensus        76 ~~vG~~v~~~~v-GdrV~~~~~g~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~V  154 (343)
T 3gaz_A           76 VAVGPEVDSFRV-GDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTV  154 (343)
T ss_dssp             EEECTTCCSCCT-TCEEEEECCSSTTCCCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEE
T ss_pred             EEECCCCCCCCC-CCEEEEEeCCCCCCCcceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEE
Confidence            345889999999 99999875     369999999999999999999999999999999999999999889999999999


Q ss_pred             EEEc-CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh
Q 024295           89 AVLG-LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP  167 (269)
Q Consensus        89 lI~G-~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~  167 (269)
                      ||+| +|++|++++|+++..|+ +|+++ .++++++.++++|++. ++ .+   .++.+.+++.+++.++|++||++|++
T Consensus       155 lV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~lGa~~-i~-~~---~~~~~~~~~~~~~~g~D~vid~~g~~  227 (343)
T 3gaz_A          155 LIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDLGATP-ID-AS---REPEDYAAEHTAGQGFDLVYDTLGGP  227 (343)
T ss_dssp             EEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHHTSEE-EE-TT---SCHHHHHHHHHTTSCEEEEEESSCTH
T ss_pred             EEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHcCCCE-ec-cC---CCHHHHHHHHhcCCCceEEEECCCcH
Confidence            9999 59999999999999999 99999 7899999999999998 77 54   78889999998888999999999975


Q ss_pred             hHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC--------CCCCcHHHHHHHHHCCCCCCCc
Q 024295          168 SLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI--------KTKSDLPTLLDKCKNKEFKLHQ  239 (269)
Q Consensus       168 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~l~~~g~~~~~~  239 (269)
                       .+..++++++++ |+++.+|...    +++...+..+++++.++.....        ...+.++++++++.+|+++  +
T Consensus       228 -~~~~~~~~l~~~-G~iv~~g~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~  299 (343)
T 3gaz_A          228 -VLDASFSAVKRF-GHVVSCLGWG----THKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLA--P  299 (343)
T ss_dssp             -HHHHHHHHEEEE-EEEEESCCCS----CCCCHHHHHTTCEEEECCTTHHHHHTCSHHHHHHHHHHHHHHHHTTCCC--C
T ss_pred             -HHHHHHHHHhcC-CeEEEEcccC----ccccchhhhcCcEEEEEEeccchhcccchHHHHHHHHHHHHHHHCCCcc--c
Confidence             889999999996 9999998654    3445566779999998754211        0125688999999999975  4


Q ss_pred             cee-EEeehhhHHHHHHHhcCCCe-----eeEEeeC
Q 024295          240 LLT-HHVKLEEIDKAIQLLKQPDC-----VKVLITI  269 (269)
Q Consensus       240 ~~~-~~~~~~~~~~a~~~~~~~~~-----~k~vl~~  269 (269)
                      .++ ++||++++++||+.+.+++.     +|+|+++
T Consensus       300 ~i~~~~~~l~~~~~A~~~~~~~~~~Gr~~GK~v~~~  335 (343)
T 3gaz_A          300 RLDPRTFSIAEIGSAYDAVLGRNDVPRQRGKIAITV  335 (343)
T ss_dssp             CBCSCCEETTCHHHHHHHHHTCTTCCCCSSBCEEEC
T ss_pred             CccCcEecHHHHHHHHHHHHcCCCcccccceEEEEe
Confidence            577 79999999999999987643     5888874

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=1.6e-36  Score=259.46  Aligned_cols=243  Identities=16%  Similarity=0.188  Sum_probs=207.3

Q ss_pred             cccccCCceeeeecCeEEeeee---ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCC-----C
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIF---SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVE-----K   84 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~---~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~-----~   84 (269)
                      +-.+|+++.++++ ||+|++..   .+|+|+||++++++.++++|+++++++||+++++++|||+++.+.++++     +
T Consensus        93 V~~vG~~v~~~~v-GdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~  171 (363)
T 4dvj_A           93 VSAVGPDVTLFRP-GDEVFYAGSIIRPGTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGA  171 (363)
T ss_dssp             EEEECTTCCSCCT-TCEEEECCCTTSCCSCBSEEEEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTS
T ss_pred             EEEeCCCCCCCCC-CCEEEEccCCCCCccceEEEEeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCC
Confidence            3446889999999 99998753   4699999999999999999999999999999999999999998889998     8


Q ss_pred             CCeEEEEc-CChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           85 GSSVAVLG-LGTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        85 ~~~vlI~G-~g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      +++|||+| +|++|++++|+||.+ |+ +|+++++++++.+.++++|+++++++.    +++.+.++++. +.++|+|||
T Consensus       172 g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~~~~~~~lGad~vi~~~----~~~~~~v~~~~-~~g~Dvvid  245 (363)
T 4dvj_A          172 APAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPETQEWVKSLGAHHVIDHS----KPLAAEVAALG-LGAPAFVFS  245 (363)
T ss_dssp             EEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHHHHHHHHTTCSEEECTT----SCHHHHHHTTC-SCCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHcCCCEEEeCC----CCHHHHHHHhc-CCCceEEEE
Confidence            99999998 699999999999985 77 999999999999999999999999986    46888888874 449999999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC-----CC----CCcHHHHHHHHHCC
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI-----KT----KSDLPTLLDKCKNK  233 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~l~~~g  233 (269)
                      |+|++..++.++++++++ |+++.+|..    .+++...+..+++++.++.....     ..    .+.++++++++.+|
T Consensus       246 ~~g~~~~~~~~~~~l~~~-G~iv~~g~~----~~~~~~~~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  320 (363)
T 4dvj_A          246 TTHTDKHAAEIADLIAPQ-GRFCLIDDP----SAFDIMLFKRKAVSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEG  320 (363)
T ss_dssp             CSCHHHHHHHHHHHSCTT-CEEEECSCC----SSCCGGGGTTTTCEEEECCTTHHHHHTCTTTHHHHHHHHHHHHHHHHT
T ss_pred             CCCchhhHHHHHHHhcCC-CEEEEECCC----CccchHHHhhccceEEEEEeeccccccCcchhhHHHHHHHHHHHHHCC
Confidence            999887889999999996 999999643    34566677778999988654221     01    24578899999999


Q ss_pred             CCCCCcceeEEe---ehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          234 EFKLHQLLTHHV---KLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       234 ~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++  .+++++   +++++++||+.+.+++. +|+||++
T Consensus       321 ~l~~--~i~~~~~~~~l~~~~~A~~~~~~~~~~GKvVl~~  358 (363)
T 4dvj_A          321 RLRT--TLTNRLSPINAANLKQAHALVESGTARGKVVIEG  358 (363)
T ss_dssp             SSCC--CEEEEECSCSHHHHHHHHHHHHHTCCCSEEEEEC
T ss_pred             Ceec--cccceecCCCHHHHHHHHHHHHhCCCceEEEEeC
Confidence            9764  466666   99999999999988776 6999975

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=2.3e-37  Score=264.35  Aligned_cols=236  Identities=17%  Similarity=0.197  Sum_probs=202.4

Q ss_pred             cccCCceeeeecCeEEeee--------------------------------eccCcccceEeeccCceEEcCCCCCcccc
Q 024295           15 LMLDSTSRMSVRGQKLYHI--------------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDA   62 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~--------------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~a   62 (269)
                      .+|++ .++++ ||+|++.                                ..+|+||||++++++.++++|++++ ++|
T Consensus        70 ~vG~~-~~~~v-GdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~-~~a  146 (357)
T 2b5w_A           70 VDPND-TELEE-GDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA-ELG  146 (357)
T ss_dssp             EECTT-SSCCT-TCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEEETTBEECCSCBSEEEEEGGGEEECCGGGS-TTG
T ss_pred             EECCC-CCCCC-CCEEEECCcCCCCCCCChHHhCcCcccCCCCcccccCccCCCcceeeEEEEchHHeEECCCCcc-hhh
Confidence            45777 88999 9999764                                2259999999999999999999999 655


Q ss_pred             cccccchhhhHHHHHHhcCCCCC------CeEEEEcCChhHHHH-HHHH-HHcCCCeEEEEcCCcc---hHHHHHhCCCc
Q 024295           63 SFLSCGFTTGYGAAWKEAKVEKG------SSVAVLGLGTVGLGA-VDGA-RMHGAAKIIGIDKNPW---KKEKGKAFGMT  131 (269)
Q Consensus        63 a~~~~~~~~a~~~l~~~~~~~~~------~~vlI~G~g~~G~~a-~~la-~~~g~~~v~~~~~~~~---~~~~~~~~g~~  131 (269)
                      + ++.+++|||+++ +.++++++      ++|||+|+|++|+++ +|+| |..|+++|++++++++   +++.++++|++
T Consensus       147 a-l~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~  224 (357)
T 2b5w_A          147 F-LIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDAT  224 (357)
T ss_dssp             G-GHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCE
T ss_pred             h-hhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCc
Confidence            4 667999999998 67889999      999999999999999 9999 9999955999999999   99999999999


Q ss_pred             eeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhh----hhCCc
Q 024295          132 DFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIAL----ACGGR  207 (269)
Q Consensus       132 ~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~----~~~~~  207 (269)
                      ++ ++++   +++.+ +++. ++ ++|+|||++|.+..+..++++++++ |+++.+|.......+++...+    +.+++
T Consensus       225 ~v-~~~~---~~~~~-i~~~-~g-g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~  296 (357)
T 2b5w_A          225 YV-DSRQ---TPVED-VPDV-YE-QMDFIYEATGFPKHAIQSVQALAPN-GVGALLGVPSDWAFEVDAGAFHREMVLHNK  296 (357)
T ss_dssp             EE-ETTT---SCGGG-HHHH-SC-CEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCCCCCCCCCHHHHHHHHHHTTC
T ss_pred             cc-CCCc---cCHHH-HHHh-CC-CCCEEEECCCChHHHHHHHHHHhcC-CEEEEEeCCCCCCceecHHHHhHHHHhCCe
Confidence            99 8876   67777 7777 66 9999999999877889999999996 999999976522445666666    77999


Q ss_pred             eEEeeeccCCCCCCcHHHHHHHHHCC--CCCCCcceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          208 TLKGTTFGGIKTKSDLPTLLDKCKNK--EFKLHQLLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      ++.++....   .++++++++++.+|  ++ ++++++++||++++++||+.+  +..+|+|+++
T Consensus       297 ~i~g~~~~~---~~~~~~~~~l~~~g~~~~-~~~~i~~~~~l~~~~~A~~~~--~~~gKvvi~~  354 (357)
T 2b5w_A          297 ALVGSVNSH---VEHFEAATVTFTKLPKWF-LEDLVTGVHPLSEFEAAFDDD--DTTIKTAIEF  354 (357)
T ss_dssp             EEEECCCCC---HHHHHHHHHHHHHSCHHH-HHHHEEEEEEGGGGGGGGCCS--TTCCEEEEEC
T ss_pred             EEEEeccCC---HHHHHHHHHHHHhCchhh-hhhhcceeecHHHHHHHHHHh--CCCceEEEEe
Confidence            999986542   46799999999999  86 667788999999999999988  4567999875

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.3e-36  Score=260.61  Aligned_cols=239  Identities=18%  Similarity=0.310  Sum_probs=200.0

Q ss_pred             cccccCCceeeeecCeEEeee------------------------------------eccCcccceEeeccCceEEcCCC
Q 024295           13 NGLMLDSTSRMSVRGQKLYHI------------------------------------FSCSTWSEYMVIDANYVVKVDPS   56 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~------------------------------------~~~g~~a~~~~v~~~~~~~vp~~   56 (269)
                      +-.+|+++.++++ ||+|+..                                    ..+|+||||+++|++.++++|++
T Consensus        88 V~~vG~~V~~~~v-GDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~aeyv~v~~~~~~~~P~~  166 (369)
T 1uuf_A           88 VVAVGDQVEKYAP-GDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHP  166 (369)
T ss_dssp             EEEECTTCCSCCT-TCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCSC
T ss_pred             EEEECCCCCCCCC-CCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCCcccceEEEcchhEEECCCC
Confidence            3445889999999 9999741                                    23599999999999999999999


Q ss_pred             -CCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeC
Q 024295           57 -IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFIN  135 (269)
Q Consensus        57 -~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~  135 (269)
                       +++++||+++++++|||+++.+ .+++++++|||+|+|++|++++|+|+..|+ +|+++++++++++.++++|++++++
T Consensus       167 ~ls~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~lGa~~vi~  244 (369)
T 1uuf_A          167 QEQLAAVAPLLCAGITTYSPLRH-WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVN  244 (369)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEE
T ss_pred             CCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEec
Confidence             9999999999999999999865 689999999999999999999999999999 7999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeecc
Q 024295          136 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFG  215 (269)
Q Consensus       136 ~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (269)
                      +.+   .++.+.   ..  .++|++||++|.+..++.++++++++ |+++.+|.......+++...++.+++++.++...
T Consensus       245 ~~~---~~~~~~---~~--~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~  315 (369)
T 1uuf_A          245 SRN---ADEMAA---HL--KSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIG  315 (369)
T ss_dssp             TTC---HHHHHT---TT--TCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC-------CHHHHHTTTCEEEECCSC
T ss_pred             ccc---HHHHHH---hh--cCCCEEEECCCCHHHHHHHHHHhccC-CEEEEeccCCCCccccCHHHHHhCCcEEEEeecC
Confidence            875   554333   33  38999999999876789999999996 9999999765321256666777899999998654


Q ss_pred             CCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          216 GIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       216 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      .   .++++++++++.+|++++.  + ++||++++++||+.+.+++. +|+|+++
T Consensus       316 ~---~~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gKvvi~~  364 (369)
T 1uuf_A          316 G---IPETQEMLDFCAEHGIVAD--I-EMIRADQINEAYERMLRGDVKYRFVIDN  364 (369)
T ss_dssp             C---HHHHHHHHHHHHHHTCCCC--E-EEECGGGHHHHHHHHHTTCSSSEEEEEG
T ss_pred             C---HHHHHHHHHHHHhCCCCcc--e-EEEcHHHHHHHHHHHHcCCCceEEEEec
Confidence            3   3678999999999997653  4 47999999999999988775 7999864

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=9.2e-37  Score=260.67  Aligned_cols=246  Identities=19%  Similarity=0.213  Sum_probs=200.4

Q ss_pred             ccccCCceeeeecCeEEeeee-ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF-SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG   92 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~-~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G   92 (269)
                      -.+|+++.++++ ||+|++.. .+|+||||++++++.++++|+++++++||+++++++|||+++.+.++++++++|||+|
T Consensus        97 ~~vG~~v~~~~v-GdrV~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G  175 (357)
T 1zsy_A           97 VAVGSNVTGLKP-GDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNA  175 (357)
T ss_dssp             EEECTTCCSCCT-TCEEEESSSCSCCSBSEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESS
T ss_pred             EEeCCCCCCCCC-CCEEEEcCCCCccceeEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeC
Confidence            345889999999 99998765 4699999999999999999999999999999989999999998888999999999999


Q ss_pred             C-ChhHHHHHHHHHHcCCCeEEEEcCCcc----hHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCC-CccEEEEccCC
Q 024295           93 L-GTVGLGAVDGARMHGAAKIIGIDKNPW----KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGM-GVDYCFECTGV  166 (269)
Q Consensus        93 ~-g~~G~~a~~la~~~g~~~v~~~~~~~~----~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~-~~d~v~d~~g~  166 (269)
                      + |++|++++|+||..|+ +++++.++.+    +.+.++++|+++++++.+   . ..+.+.+.+++. ++|++|||+|+
T Consensus       176 a~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~---~-~~~~~~~~~~~~~~~Dvvid~~g~  250 (357)
T 1zsy_A          176 SNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDRLKSLGAEHVITEEE---L-RRPEMKNFFKDMPQPRLALNCVGG  250 (357)
T ss_dssp             TTSHHHHHHHHHHHHHTC-EEEEEECCCSCHHHHHHHHHHTTCSEEEEHHH---H-HSGGGGGTTSSSCCCSEEEESSCH
T ss_pred             CcCHHHHHHHHHHHHcCC-EEEEEecCccchHHHHHHHHhcCCcEEEecCc---c-hHHHHHHHHhCCCCceEEEECCCc
Confidence            7 9999999999999999 6766654432    567889999999997642   1 123455555543 69999999998


Q ss_pred             hhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCC-------CCCcHHHHHHHHHCCCCCCCc
Q 024295          167 PSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIK-------TKSDLPTLLDKCKNKEFKLHQ  239 (269)
Q Consensus       167 ~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~g~~~~~~  239 (269)
                      + ....++++++++ |+++.+|.....+.+++...++.+++++.+++...+.       .++.++++++++.+|++++. 
T Consensus       251 ~-~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~-  327 (357)
T 1zsy_A          251 K-SSTELLRQLARG-GTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAP-  327 (357)
T ss_dssp             H-HHHHHHTTSCTT-CEEEECCCCTTCCBCCCHHHHHHSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCC-
T ss_pred             H-HHHHHHHhhCCC-CEEEEEecCCCCCCCCCHHHHHhcCceEEEEEcchhcccCCHHHHHHHHHHHHHHHHcCCCcCc-
Confidence            7 446789999996 9999998654334566767777899999998654221       12357889999999997765 


Q ss_pred             ceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          240 LLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       240 ~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                       +.++||++++++||+.+.++.. +|+||++
T Consensus       328 -~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  357 (357)
T 1zsy_A          328 -ACSQVPLQDYQSALEASMKPFISSKQILTM  357 (357)
T ss_dssp             -CEEEEEGGGHHHHHHHHTSSSCSSEEEEEC
T ss_pred             -cceEEcHHHHHHHHHHHHhCCCCCcEEEeC
Confidence             5589999999999999987765 6999975

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.7e-36  Score=256.23  Aligned_cols=248  Identities=18%  Similarity=0.169  Sum_probs=209.3

Q ss_pred             cccccCCceeeeecCeEEeee-eccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEE
Q 024295           13 NGLMLDSTSRMSVRGQKLYHI-FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVL   91 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~-~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~   91 (269)
                      +-.+|+++.++++ ||+|... ..+|+|+||++++++.++++|+++++++|++++++++|||+++.+.++++++++|||+
T Consensus        69 V~~vG~~v~~~~~-GdrV~~~g~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~  147 (327)
T 1qor_A           69 VSKVGSGVKHIKA-GDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFH  147 (327)
T ss_dssp             EEEECTTCCSCCT-TCEEEESCCSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEES
T ss_pred             EEEECCCCCCCCC-CCEEEECCCCCceeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEE
Confidence            3445889999999 9999422 2359999999999999999999999999999999999999999878999999999999


Q ss_pred             c-CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHH
Q 024295           92 G-LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLL  170 (269)
Q Consensus        92 G-~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~  170 (269)
                      | +|++|++++|+++..|+ +|+++++++++.+.++++|+++++++.+   .++.+.+.+.+++.++|++||++| ...+
T Consensus       148 Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~D~vi~~~g-~~~~  222 (327)
T 1qor_A          148 AAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVINYRE---EDLVERLKEITGGKKVRVVYDSVG-RDTW  222 (327)
T ss_dssp             STTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTTCCEEEEEECSC-GGGH
T ss_pred             CCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEECCC---ccHHHHHHHHhCCCCceEEEECCc-hHHH
Confidence            9 59999999999999999 9999999999999999999999998876   788888888877668999999999 4588


Q ss_pred             HHHHHHcccCCcEEEEEccCCCccccchhHhhhhC-CceEEeeeccCCC-----CCCcHHHHHHHHHCCCCCCCccee--
Q 024295          171 SEALETTKVGKGKVIVIGVGVDAMVPLNVIALACG-GRTLKGTTFGGIK-----TKSDLPTLLDKCKNKEFKLHQLLT--  242 (269)
Q Consensus       171 ~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~l~~~g~~~~~~~~~--  242 (269)
                      +.++++++++ |+++.+|.......+++...++.+ ++++.+.....+.     ..+.++++++++.+|++++  .++  
T Consensus       223 ~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~i~~~  299 (327)
T 1qor_A          223 ERSLDCLQRR-GLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKV--DVAEQ  299 (327)
T ss_dssp             HHHHHTEEEE-EEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCHHHHCCSHHHHHHHHHHHHHHHHTTSSCC--CCCGG
T ss_pred             HHHHHHhcCC-CEEEEEecCCCCCCccCHHHHhhccceEEEccchhhhcCCHHHHHHHHHHHHHHHHCCCccc--ccccC
Confidence            9999999996 999999976543345666667767 7887765432111     1245789999999999764  577  


Q ss_pred             EEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          243 HHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       243 ~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++||++++++||+.+.+++. +|+|+++
T Consensus       300 ~~~~l~~~~~A~~~~~~~~~~gKvvl~~  327 (327)
T 1qor_A          300 QKYPLKDAQRAHEILESRATQGSSLLIP  327 (327)
T ss_dssp             GEEEGGGHHHHHHHHHTTCCCBCCEEEC
T ss_pred             cEEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence            89999999999999987765 6999875

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.4e-36  Score=256.90  Aligned_cols=237  Identities=21%  Similarity=0.332  Sum_probs=188.9

Q ss_pred             cccCCceeeeecCeEEeeee---------------------------ccCcccceEeec-cCceEEcCCCCCcccccccc
Q 024295           15 LMLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVID-ANYVVKVDPSIDPSDASFLS   66 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~-~~~~~~vp~~~~~~~aa~~~   66 (269)
                      .+|++ .++++ ||+|++..                           .+|+||||++++ ++.++++ +++++++|+.++
T Consensus        73 ~vG~~-~~~~~-GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~l~~~~aa~l~  149 (344)
T 2h6e_A           73 EVGEL-AKVKK-GDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKL-NSLSPVEAAPLA  149 (344)
T ss_dssp             EECTT-CCCCT-TCEEEECSCBCCSCSTTGGGTCGGGCTTCBCBTTTBCCSSBSEEEESCGGGEEEE-SSSCHHHHGGGG
T ss_pred             EECCC-CCCCC-CCEEEECCCCCCCCChhhhCCCcccCCCccccccccCCcceeeEEecCcccEEEe-CCCCHHHhhhhh
Confidence            45777 88999 99997542                           359999999999 9999999 999999999999


Q ss_pred             cchhhhHHHHHHh----cCCCCCCeEEEEcCChhHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHhCCCceeeCCCCCC
Q 024295           67 CGFTTGYGAAWKE----AKVEKGSSVAVLGLGTVGLGAVDGARMH--GAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEP  140 (269)
Q Consensus        67 ~~~~~a~~~l~~~----~~~~~~~~vlI~G~g~~G~~a~~la~~~--g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~  140 (269)
                      ++++|||+++...    +++ ++++|||+|+|++|++++|+|+..  |+ +|+++++++++++.++++|+++++++++  
T Consensus       150 ~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~--  225 (344)
T 2h6e_A          150 DAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALELGADYVSEMKD--  225 (344)
T ss_dssp             THHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHHTCSEEECHHH--
T ss_pred             hhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHhCCCEEecccc--
Confidence            9999999998665    388 999999999999999999999999  99 8999999999999999999999997642  


Q ss_pred             CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCC
Q 024295          141 NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTK  220 (269)
Q Consensus       141 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (269)
                       .  .+.+.+++++.++|++||++|.+..++.++++++++ |+++.+|.... ..+++...++.+++++.++....   .
T Consensus       226 -~--~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~---~  297 (344)
T 2h6e_A          226 -A--ESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQE-GAIILVGMEGK-RVSLEAFDTAVWNKKLLGSNYGS---L  297 (344)
T ss_dssp             -H--HHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCSS-CCCCCHHHHHHTTCEEEECCSCC---H
T ss_pred             -c--hHHHHHhhcCCCccEEEECCCChHHHHHHHHHhhcC-CEEEEeCCCCC-CcccCHHHHhhCCcEEEEEecCC---H
Confidence             1  233445555568999999999987889999999996 99999998653 45677777778999999986432   4


Q ss_pred             CcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          221 SDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       221 ~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++++++++.+|++++  .+ ++||++++++||+.+.+++. +|+||++
T Consensus       298 ~~~~~~~~l~~~g~i~~--~i-~~~~l~~~~~A~~~~~~~~~~gKvvl~~  344 (344)
T 2h6e_A          298 NDLEDVVRLSESGKIKP--YI-IKVPLDDINKAFTNLDEGRVDGRQVITP  344 (344)
T ss_dssp             HHHHHHHHHHHTTSSCC--CE-EEECC----------------CEEEECC
T ss_pred             HHHHHHHHHHHcCCCCc--ce-EEEeHHHHHHHHHHHHcCCCceEEEEeC
Confidence            67999999999999764  46 89999999999999988775 7999875

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-36  Score=254.30  Aligned_cols=243  Identities=19%  Similarity=0.225  Sum_probs=210.1

Q ss_pred             ccccCCceeeeecCeEEeee----------------------------eccCcccceEeeccCceEEcCCCCCccccccc
Q 024295           14 GLMLDSTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFL   65 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~   65 (269)
                      -.+|+++.++++ ||+|+..                            ..+|+||||++++++.++++|+++++++|+++
T Consensus        73 ~~vG~~v~~~~~-GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l  151 (347)
T 2hcy_A           73 VGMGENVKGWKI-GDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAAHIPQGTDLAQVAPI  151 (347)
T ss_dssp             EEECTTCCSCCT-TCEEEECSEEECCSSSTTTTTTCGGGCTTCEEBTTTBCCSSBSEEEEETTTSEEECTTCCHHHHGGG
T ss_pred             EEECCCCCCCcC-CCEEEEecCCCCCCCChhhhCCCcccCccccccccCCCCcceeEEEeccccEEECCCCCCHHHHHHH
Confidence            345888999999 9999742                            12589999999999999999999999999999


Q ss_pred             ccchhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccH
Q 024295           66 SCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSI  144 (269)
Q Consensus        66 ~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  144 (269)
                      +++++|||+++.+ .+++++++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++++|+++++|..+  ..++
T Consensus       152 ~~~~~ta~~~l~~-~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~  227 (347)
T 2hcy_A          152 LCAGITVYKALKS-ANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGEVFIDFTK--EKDI  227 (347)
T ss_dssp             GTHHHHHHHHHHT-TTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTTCCEEEETTT--CSCH
T ss_pred             hhhHHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcCCceEEecCc--cHhH
Confidence            9999999999854 58999999999997 8999999999999999 9999999999999999999998888762  2678


Q ss_pred             HHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHH
Q 024295          145 SELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLP  224 (269)
Q Consensus       145 ~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (269)
                      .+.+++.+++ ++|++||++|.+..++.+++.++++ |+++.+|.......+++...++.+++++.|+....   .++++
T Consensus       228 ~~~~~~~~~~-~~D~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~  302 (347)
T 2hcy_A          228 VGAVLKATDG-GAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVGN---RADTR  302 (347)
T ss_dssp             HHHHHHHHTS-CEEEEEECSSCHHHHHHHTTSEEEE-EEEEECCCCTTCEEEEEHHHHHHTTCEEEECCCCC---HHHHH
T ss_pred             HHHHHHHhCC-CCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEeCCCCCCCCCCHHHHhhCCcEEEEccCCC---HHHHH
Confidence            8888888877 9999999999876889999999996 99999997654345677777778999999986432   36799


Q ss_pred             HHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          225 TLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       225 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++++.+|++++.   +++||++++++||+.+.+++. +|+|+++
T Consensus       303 ~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  345 (347)
T 2hcy_A          303 EALDFFARGLVKSP---IKVVGLSTLPEIYEKMEKGQIVGRYVVDT  345 (347)
T ss_dssp             HHHHHHHTTSCCCC---EEEEEGGGHHHHHHHHHTTCCSSEEEEES
T ss_pred             HHHHHHHhCCCccc---eEEEcHHHHHHHHHHHHcCCcceeEEEec
Confidence            99999999997653   478999999999999988764 7999875

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=2.4e-36  Score=257.25  Aligned_cols=233  Identities=23%  Similarity=0.333  Sum_probs=199.5

Q ss_pred             ccccCCceeeeecCeEEeeee---------------------------c----------cCcccceEeeccCceEEcCCC
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF---------------------------S----------CSTWSEYMVIDANYVVKVDPS   56 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~---------------------------~----------~g~~a~~~~v~~~~~~~vp~~   56 (269)
                      -.+|+++.++++ ||+|+...                           .          +|+||||++++++.++++|++
T Consensus        71 ~~vG~~v~~~~v-GdrV~~~~~~~~Cg~C~~C~~g~~~~c~~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~  149 (348)
T 3two_A           71 KEVGKGVKKFKI-GDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKN  149 (348)
T ss_dssp             EEECTTCCSCCT-TCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSSEEGGGTTEECCCSSBSEEEEEGGGCEECCTT
T ss_pred             EEECCCCCCCCC-CCEEEEeCCcCCCCCChhHhCCCcccCcccccccccccccccCCcCCccccceEEechhhEEECCCC
Confidence            446889999999 99996421                           1          299999999999999999999


Q ss_pred             CCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCC
Q 024295           57 IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINP  136 (269)
Q Consensus        57 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~  136 (269)
                      +++++||.+++++.|||+++. ..+++++++|||+|+|++|++++|+|+..|+ +|+++++++++++.++++|+++++ .
T Consensus       150 ~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~-~  226 (348)
T 3two_A          150 APLEKVAPLLCAGITTYSPLK-FSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGVKHFY-T  226 (348)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSEEE-S
T ss_pred             CCHHHhhhhhhhHHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCeec-C
Confidence            999999999999999999985 5699999999999999999999999999999 999999999999999999999988 3


Q ss_pred             CCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCcccc-chhHhhh-hCCceEEeeec
Q 024295          137 DDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVP-LNVIALA-CGGRTLKGTTF  214 (269)
Q Consensus       137 ~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~-~~~~~~~-~~~~~~~~~~~  214 (269)
                      +.   +.+        .. ++|++||++|++..++.++++++++ |+++.+|.......+ ++...++ .+++++.|+..
T Consensus       227 ~~---~~~--------~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~  293 (348)
T 3two_A          227 DP---KQC--------KE-ELDFIISTIPTHYDLKDYLKLLTYN-GDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLI  293 (348)
T ss_dssp             SG---GGC--------CS-CEEEEEECCCSCCCHHHHHTTEEEE-EEEEECCCCCGGGCCEEEHHHHHHTCSCEEEECCS
T ss_pred             CH---HHH--------hc-CCCEEEECCCcHHHHHHHHHHHhcC-CEEEEECCCCCCCcccCCHHHHHhhCCeEEEEEec
Confidence            22   211        12 8999999999887889999999996 999999987622333 6666676 89999999875


Q ss_pred             cCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          215 GGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       215 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ..   .+++.++++++.+|++++.   .++||++++++||+.+.+++. +|+||++
T Consensus       294 ~~---~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvVi~~  343 (348)
T 3two_A          294 GG---IKETQEMVDFSIKHNIYPE---IDLILGKDIDTAYHNLTHGKAKFRYVIDM  343 (348)
T ss_dssp             CC---HHHHHHHHHHHHHTTCCCC---EEEECGGGHHHHHHHHHTTCCCSEEEEEG
T ss_pred             CC---HHHHHHHHHHHHhCCCCce---EEEEEHHHHHHHHHHHHcCCCceEEEEec
Confidence            53   3679999999999998763   479999999999999988876 6999874

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=1e-36  Score=261.08  Aligned_cols=253  Identities=15%  Similarity=0.097  Sum_probs=206.0

Q ss_pred             cccccCCceeeeecCeEEeeee-ccCcccceEeeccCceEEcCC-----------CCCcccccccccchhhhHHHHHHhc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIF-SCSTWSEYMVIDANYVVKVDP-----------SIDPSDASFLSCGFTTGYGAAWKEA   80 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~-~~g~~a~~~~v~~~~~~~vp~-----------~~~~~~aa~~~~~~~~a~~~l~~~~   80 (269)
                      +-.+|+++.++++ ||+|++.. .+|+|+||++++++.++++|+           ++++++||+++++++|||+++.+.+
T Consensus        84 V~~vG~~v~~~~v-GdrV~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~  162 (364)
T 1gu7_A           84 VIKVGSNVSSLEA-GDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYV  162 (364)
T ss_dssp             EEEECTTCCSCCT-TCEEEESSSCCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSS
T ss_pred             EEEeCCCCCcCCC-CCEEEecCCCCCcchheEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhh
Confidence            3446889999999 99998764 459999999999999999998           8999999999999999999987778


Q ss_pred             CCCCC-CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcch----HHHHHhCCCceeeCCCCCCCccHHHHHHhhh--
Q 024295           81 KVEKG-SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWK----KEKGKAFGMTDFINPDDEPNKSISELVKGIT--  152 (269)
Q Consensus        81 ~~~~~-~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~----~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~--  152 (269)
                      +++++ ++|||+|+ |++|++++|+||..|+ +++++++++++    .+.++++|+++++++++....++.+.+++.+  
T Consensus       163 ~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~  241 (364)
T 1gu7_A          163 KLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQ  241 (364)
T ss_dssp             CCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHH
T ss_pred             ccCCCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhc
Confidence            99999 99999997 9999999999999999 88888766654    6778899999999875200146788888887  


Q ss_pred             CCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC------CCcHHHH
Q 024295          153 HGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT------KSDLPTL  226 (269)
Q Consensus       153 ~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  226 (269)
                      ++.++|++|||+|++.. ..++++++++ |+++.+|.......+++...++.+++++.+++...+..      ++.++++
T Consensus       242 ~~~g~Dvvid~~G~~~~-~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  319 (364)
T 1gu7_A          242 SGGEAKLALNCVGGKSS-TGIARKLNNN-GLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQI  319 (364)
T ss_dssp             HTCCEEEEEESSCHHHH-HHHHHTSCTT-CEEEECCCCSSCCEEECHHHHHHSCCEEEECCHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCCceEEEECCCchhH-HHHHHHhccC-CEEEEecCCCCCCcccCHHHHhhcCcEEEEEchhHhcccCHHHHHHHHHHH
Confidence            55599999999998754 4889999996 99999997654345566667778999999986543211      2468899


Q ss_pred             HHHHHCCCCCCCcceeEEe-ehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          227 LDKCKNKEFKLHQLLTHHV-KLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       227 ~~l~~~g~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++.+|++++.+..+..+ +++++++||+.+.++.. +|+|+++
T Consensus       320 ~~l~~~g~l~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  364 (364)
T 1gu7_A          320 IAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY  364 (364)
T ss_dssp             HHHHHHTCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             HHHHHcCCcccccceEEecCchhhHHHHHHHHHhCCCCceEEEeC
Confidence            9999999988765543333 34599999998877654 7999975

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=1.2e-35  Score=252.95  Aligned_cols=241  Identities=23%  Similarity=0.295  Sum_probs=210.0

Q ss_pred             ccccCCceeeeecCeEEeeee---------------------------ccCcccceEeecc-CceEEcCCCCCccccccc
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF---------------------------SCSTWSEYMVIDA-NYVVKVDPSIDPSDASFL   65 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~---------------------------~~g~~a~~~~v~~-~~~~~vp~~~~~~~aa~~   65 (269)
                      -.+|+++.++++ ||+|++..                           .+|+||||+++|+ +.++++ +++++++|+.+
T Consensus        75 ~~vG~~v~~~~v-GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~~~~~~aa~l  152 (347)
T 1jvb_A           75 EEVGDEVVGYSK-GDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPL  152 (347)
T ss_dssp             EEECTTCCSCCT-TCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEEC-SSSCHHHHGGG
T ss_pred             EEECCCCCCCCC-CCEEEeCCCCCCCCChhhhCcCcccCcccccccccCCCcceeEEEecCccceEEe-CCCCHHHcccc
Confidence            345789999999 99997542                           3599999999999 999999 99999999999


Q ss_pred             ccchhhhHHHHHHhcCCCCCCeEEEEcCC-hhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCcc
Q 024295           66 SCGFTTGYGAAWKEAKVEKGSSVAVLGLG-TVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKS  143 (269)
Q Consensus        66 ~~~~~~a~~~l~~~~~~~~~~~vlI~G~g-~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  143 (269)
                      ++++.|||+++. .++++++++|||+|+| ++|++++|+++.. |+ +|+++++++++.+.++++|+++++++.+   .+
T Consensus       153 ~~~~~ta~~~l~-~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~g~~~~~~~~~---~~  227 (347)
T 1jvb_A          153 TCSGITTYRAVR-KASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRAGADYVINASM---QD  227 (347)
T ss_dssp             GTHHHHHHHHHH-HTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHHTCSEEEETTT---SC
T ss_pred             hhhHHHHHHHHH-hcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHhCCCEEecCCC---cc
Confidence            999999999985 5899999999999974 9999999999999 99 8999999999999999999999998876   77


Q ss_pred             HHHHHHhhhC-CCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCc
Q 024295          144 ISELVKGITH-GMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSD  222 (269)
Q Consensus       144 ~~~~i~~~~~-~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (269)
                      +.+.+.+.++ + ++|++||++|.+..++.++++++++ |+++.+|.....+ +++...++.+++++.++....   +++
T Consensus       228 ~~~~~~~~~~~~-~~d~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~~-~~~~~~~~~~~~~i~g~~~~~---~~~  301 (347)
T 1jvb_A          228 PLAEIRRITESK-GVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGADL-HYHAPLITLSEIQFVGSLVGN---QSD  301 (347)
T ss_dssp             HHHHHHHHTTTS-CEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSCCCC-CCCHHHHHHHTCEEEECCSCC---HHH
T ss_pred             HHHHHHHHhcCC-CceEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCCCCC-CCCHHHHHhCceEEEEEeccC---HHH
Confidence            8888888776 5 8999999999887889999999996 9999999765223 677777778999999986432   467


Q ss_pred             HHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          223 LPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       223 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++++++.+|+++  +.++++||++++++||+.+.+++. +|+||++
T Consensus       302 ~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  347 (347)
T 1jvb_A          302 FLGIMRLAEAGKVK--PMITKTMKLEEANEAIDNLENFKAIGRQVLIP  347 (347)
T ss_dssp             HHHHHHHHHTTSSC--CCCEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             HHHHHHHHHcCCCC--ceEEEEEcHHHHHHHHHHHHCCCCcceEEecC
Confidence            99999999999964  568899999999999999988775 6999875

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=9.2e-36  Score=254.42  Aligned_cols=236  Identities=22%  Similarity=0.357  Sum_probs=200.4

Q ss_pred             ccccCCceeeeecCeEEeee-----------------------------------eccCcccceEeeccCceEEcCCCCC
Q 024295           14 GLMLDSTSRMSVRGQKLYHI-----------------------------------FSCSTWSEYMVIDANYVVKVDPSID   58 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~-----------------------------------~~~g~~a~~~~v~~~~~~~vp~~~~   58 (269)
                      -.+|+++.++++ ||+|+..                                   ..+|+||||+++|++.++++|++++
T Consensus        76 ~~vG~~v~~~~v-GdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls  154 (357)
T 2cf5_A           76 VEVGSDVSKFTV-GDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMA  154 (357)
T ss_dssp             EEECSSCCSCCT-TCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGGEEECCSSCC
T ss_pred             EEECCCCCCCCC-CCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccccCCCCCCCccccEEEechhhEEECcCCCC
Confidence            345889999999 9999631                                   1469999999999999999999999


Q ss_pred             cccccccccchhhhHHHHHHhcCCC-CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCceeeCC
Q 024295           59 PSDASFLSCGFTTGYGAAWKEAKVE-KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMTDFINP  136 (269)
Q Consensus        59 ~~~aa~~~~~~~~a~~~l~~~~~~~-~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~~v~~~  136 (269)
                      +++|+++++++.|||+++. ..+++ ++++|||+|+|++|++++|+|+..|+ +|+++++++++++.++ ++|+++++++
T Consensus       155 ~~~aa~l~~~~~ta~~~l~-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~vi~~  232 (357)
T 2cf5_A          155 VEQAAPLLCAGVTVYSPLS-HFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGADDYVIG  232 (357)
T ss_dssp             HHHHTGGGTHHHHHHHHHH-HTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCCSCEEET
T ss_pred             HHHhhhhhhhHHHHHHHHH-hcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCCceeecc
Confidence            9999999999999999875 56888 99999999999999999999999999 9999999999999988 8999999988


Q ss_pred             CCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCcccc-chhHhhhhCCceEEeeecc
Q 024295          137 DDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVP-LNVIALACGGRTLKGTTFG  215 (269)
Q Consensus       137 ~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~  215 (269)
                      ++   .   +.+++.++  ++|++||++|.+..++.++++++++ |+++.+|.... +.. ++.. ++.+++++.++...
T Consensus       233 ~~---~---~~~~~~~~--g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~-~~~~~~~i~g~~~~  301 (357)
T 2cf5_A          233 SD---Q---AKMSELAD--SLDYVIDTVPVHHALEPYLSLLKLD-GKLILMGVINN-PLQFLTPL-LMLGRKVITGSFIG  301 (357)
T ss_dssp             TC---H---HHHHHSTT--TEEEEEECCCSCCCSHHHHTTEEEE-EEEEECSCCSS-CCCCCHHH-HHHHTCEEEECCSC
T ss_pred             cc---H---HHHHHhcC--CCCEEEECCCChHHHHHHHHHhccC-CEEEEeCCCCC-CccccCHH-HHhCccEEEEEccC
Confidence            64   3   34555543  8999999999876789999999996 99999997653 233 6665 77799999998653


Q ss_pred             CCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          216 GIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       216 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      .   .++++++++++.+|++++.  + ++||++++++||+.+.+++. +|+|+++
T Consensus       302 ~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvvi~~  350 (357)
T 2cf5_A          302 S---MKETEEMLEFCKEKGLSSI--I-EVVKMDYVNTAFERLEKNDVRYRFVVDV  350 (357)
T ss_dssp             C---HHHHHHHHHHHHHTTCCCC--E-EEEEGGGHHHHHHHHHTTCSSSEEEEET
T ss_pred             C---HHHHHHHHHHHHcCCCCCc--e-EEEeHHHHHHHHHHHHCCCCceEEEEeC
Confidence            2   3678999999999997654  4 69999999999999988775 6999874

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=1.7e-36  Score=259.26  Aligned_cols=237  Identities=19%  Similarity=0.295  Sum_probs=202.4

Q ss_pred             ccccCCce-eeeecCeEEee-----------------------------------eeccCcccceEeeccCceEEcCCCC
Q 024295           14 GLMLDSTS-RMSVRGQKLYH-----------------------------------IFSCSTWSEYMVIDANYVVKVDPSI   57 (269)
Q Consensus        14 ~~vg~~~~-~~~~~Gd~v~~-----------------------------------~~~~g~~a~~~~v~~~~~~~vp~~~   57 (269)
                      -.+|+++. ++++ ||+|..                                   ...+|+||||++++++.++++|+++
T Consensus        75 ~~vG~~v~~~~~~-GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~  153 (360)
T 1piw_A           75 VKLGPKSNSGLKV-GQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENI  153 (360)
T ss_dssp             EEECTTCCSSCCT-TCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTS
T ss_pred             EEeCCCCCCCCCC-CCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCCCcceeEEEEchhheEECCCCC
Confidence            34578888 8999 999931                                   1235999999999999999999999


Q ss_pred             CcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCC
Q 024295           58 DPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPD  137 (269)
Q Consensus        58 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~  137 (269)
                      ++++||++++++.|||+++.+ ++++++++|||+|+|++|++++|+|+..|+ +|+++++++++++.++++|+++++++.
T Consensus       154 ~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~~~~  231 (360)
T 1piw_A          154 PSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATL  231 (360)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGG
T ss_pred             CHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCCEEEcCc
Confidence            999999999999999999865 899999999999999999999999999999 899999999999999999999999887


Q ss_pred             CCCCc-cHHHHHHhhhCCCCccEEEEccCC--hhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeec
Q 024295          138 DEPNK-SISELVKGITHGMGVDYCFECTGV--PSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTF  214 (269)
Q Consensus       138 ~~~~~-~~~~~i~~~~~~~~~d~v~d~~g~--~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (269)
                      +   . ++.+.++    + ++|++||++|.  +..++.++++++++ |+++.+|.... ..+++...++.+++++.++..
T Consensus       232 ~---~~~~~~~~~----~-~~D~vid~~g~~~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g~~~  301 (360)
T 1piw_A          232 E---EGDWGEKYF----D-TFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPEQ-HEMLSLKPYGLKAVSISYSAL  301 (360)
T ss_dssp             G---TSCHHHHSC----S-CEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCCS-SCCEEECGGGCBSCEEEECCC
T ss_pred             C---chHHHHHhh----c-CCCEEEECCCCCcHHHHHHHHHHhcCC-CEEEEecCCCC-ccccCHHHHHhCCeEEEEEec
Confidence            5   5 6655543    3 89999999998  55788999999996 99999997653 115666667779999999764


Q ss_pred             cCCCCCCcHHHHHHHHHCCCCCCCcceeEEeehhh--HHHHHHHhcCCCe-eeEEeeC
Q 024295          215 GGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEE--IDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       215 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ..   .++++++++++.+|++++.  + ++||+++  +++||+.+.+++. +|+|+++
T Consensus       302 ~~---~~~~~~~~~l~~~g~l~~~--i-~~~~l~~~~~~~A~~~~~~~~~~gKvvi~~  353 (360)
T 1piw_A          302 GS---IKELNQLLKLVSEKDIKIW--V-ETLPVGEAGVHEAFERMEKGDVRYRFTLVG  353 (360)
T ss_dssp             CC---HHHHHHHHHHHHHTTCCCC--E-EEEESSHHHHHHHHHHHHHTCCSSEEEEEC
T ss_pred             CC---HHHHHHHHHHHHhCCCcce--E-EEEeccHhHHHHHHHHHHCCCCceEEEEec
Confidence            32   3679999999999997644  6 8999999  9999999987765 6999875

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=9.9e-36  Score=250.79  Aligned_cols=234  Identities=17%  Similarity=0.180  Sum_probs=198.5

Q ss_pred             ccccCCceeeeecCeEEeeee----ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEE
Q 024295           14 GLMLDSTSRMSVRGQKLYHIF----SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVA   89 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~----~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vl   89 (269)
                      -.+|+++.++++ ||+|++..    .+|+|+||++++++.++++|+++++++|++++++++|||+++ +.++++++++||
T Consensus        80 ~~vG~~v~~~~~-GdrV~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vl  157 (321)
T 3tqh_A           80 IELGSDVNNVNI-GDKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVL  157 (321)
T ss_dssp             EEECTTCCSCCT-TCEEEEECSTTTCCCCSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEE
T ss_pred             EEeCCCCCCCCC-CCEEEEccCCCCCCCcceEEEEecHHHhccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEE
Confidence            346889999999 99999775    359999999999999999999999999999999999999998 889999999999


Q ss_pred             EEc-CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCcc-HHHHHHhhhCCCCccEEEEccCCh
Q 024295           90 VLG-LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKS-ISELVKGITHGMGVDYCFECTGVP  167 (269)
Q Consensus        90 I~G-~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-~~~~i~~~~~~~~~d~v~d~~g~~  167 (269)
                      |+| +|++|++++|+|+..|+ +|++++ ++++.+.++++|+++++|+++   .+ +.+.+      .++|++|||+|++
T Consensus       158 V~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~lGa~~~i~~~~---~~~~~~~~------~g~D~v~d~~g~~  226 (321)
T 3tqh_A          158 IHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKALGAEQCINYHE---EDFLLAIS------TPVDAVIDLVGGD  226 (321)
T ss_dssp             ESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHHHTCSEEEETTT---SCHHHHCC------SCEEEEEESSCHH
T ss_pred             EEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHHcCCCEEEeCCC---cchhhhhc------cCCCEEEECCCcH
Confidence            997 69999999999999999 899988 566789999999999999886   55 54433      3899999999987


Q ss_pred             hHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCCCCcceeEEeeh
Q 024295          168 SLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFKLHQLLTHHVKL  247 (269)
Q Consensus       168 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  247 (269)
                      . ...++++++++ |+++.+|.... .  .....+..+++++.++...  ...++++++++++.+|++++  .++++||+
T Consensus       227 ~-~~~~~~~l~~~-G~iv~~g~~~~-~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~g~l~~--~i~~~~~l  297 (321)
T 3tqh_A          227 V-GIQSIDCLKET-GCIVSVPTITA-G--RVIEVAKQKHRRAFGLLKQ--FNIEELHYLGKLVSEDKLRI--EISRIFQL  297 (321)
T ss_dssp             H-HHHHGGGEEEE-EEEEECCSTTH-H--HHHHHHHHTTCEEECCCCC--CCHHHHHHHHHHHHTTSSCC--CEEEEECG
T ss_pred             H-HHHHHHhccCC-CEEEEeCCCCc-h--hhhhhhhhcceEEEEEecC--CCHHHHHHHHHHHHCCCccc--ccccEEcH
Confidence            4 59999999996 99999986542 1  1222355688999885422  23467999999999999765  58899999


Q ss_pred             hhHHHHHHHhcCCCe-eeEEeeC
Q 024295          248 EEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       248 ~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +++++||+.+.+++. +|+|+++
T Consensus       298 ~~~~~A~~~~~~~~~~gKvvl~~  320 (321)
T 3tqh_A          298 SEAVTAHELLETGHVRGKLVFKV  320 (321)
T ss_dssp             GGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCceEEEEe
Confidence            999999999998876 6999975

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=4e-37  Score=258.68  Aligned_cols=231  Identities=13%  Similarity=0.151  Sum_probs=180.6

Q ss_pred             cccccCCceeeeecCeEEeeeec---cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEE
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIFS---CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVA   89 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~~---~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vl   89 (269)
                      +-.+|+++.++++ ||+|++...   +|+|+||++++++.++++|+++++++||+++++++|||+++ +.++++++++||
T Consensus        70 V~~vG~~v~~~~v-GdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~Vl  147 (315)
T 3goh_A           70 IVKVGAKVDSKML-GRRVAYHTSLKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPLTKQREVL  147 (315)
T ss_dssp             EEEECTTSCGGGT-TCEEEEECCTTSCCSSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEE
T ss_pred             EEEeCCCCCCCCC-CCEEEEeCCCCCCcccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEE
Confidence            3446889999999 999998753   69999999999999999999999999999999999999999 889999999999


Q ss_pred             EEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhH
Q 024295           90 VLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  169 (269)
Q Consensus        90 I~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  169 (269)
                      |+|+|++|++++|+||..|+ +|++++ ++++.+.++++|++++++.        .+   ++  +.++|++|||+|++ .
T Consensus       148 V~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~d--------~~---~v--~~g~Dvv~d~~g~~-~  211 (315)
T 3goh_A          148 IVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHLYRE--------PS---QV--TQKYFAIFDAVNSQ-N  211 (315)
T ss_dssp             EECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEEESS--------GG---GC--CSCEEEEECC------
T ss_pred             EECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEEEcC--------HH---Hh--CCCccEEEECCCch-h
Confidence            99999999999999999999 999999 9999999999999998841        11   22  44999999999987 4


Q ss_pred             HHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCC---C-------CCcHHHHHHHHHCCCCCCCc
Q 024295          170 LSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIK---T-------KSDLPTLLDKCKNKEFKLHQ  239 (269)
Q Consensus       170 ~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------~~~~~~~~~l~~~g~~~~~~  239 (269)
                      ...++++++++ |+++.+|.... ...+   ....+++.+....+....   .       ++.++++++++.+|+++  +
T Consensus       212 ~~~~~~~l~~~-G~~v~~g~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~  284 (315)
T 3goh_A          212 AAALVPSLKAN-GHIICIQDRIP-APID---PAFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLTLIAQGKME--I  284 (315)
T ss_dssp             --TTGGGEEEE-EEEEEECCC--------------CCSEEEEECGGGHHHHCCHHHHHHHHHHHHHHHHHHHTTSSC--C
T ss_pred             HHHHHHHhcCC-CEEEEEeCCCC-cccc---chhhhcceeeEEEeecccccCChhHHHHHHHHHHHHHHHHHCCCcc--c
Confidence            58899999996 99999975442 1111   122244444443322110   0       12477899999999965  5


Q ss_pred             ceeEEeehhhHHHHHHHhcCCCeeeEEeeC
Q 024295          240 LLTHHVKLEEIDKAIQLLKQPDCVKVLITI  269 (269)
Q Consensus       240 ~~~~~~~~~~~~~a~~~~~~~~~~k~vl~~  269 (269)
                      .++++||++++++||+.+. +..+|+|+++
T Consensus       285 ~i~~~~~l~~~~~A~~~~~-~~~gKvvi~~  313 (315)
T 3goh_A          285 AAPDIFRFEQMIEALDHSE-QTKLKTVLTL  313 (315)
T ss_dssp             CCCEEEEGGGHHHHHHHHH-HHCCCEEEES
T ss_pred             ccceEecHHHHHHHHHHHH-hcCCcEEEEe
Confidence            6889999999999999988 5557999875

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=9.1e-37  Score=257.53  Aligned_cols=237  Identities=16%  Similarity=0.199  Sum_probs=199.7

Q ss_pred             CceeeeecCeEEeeee------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHH--HhcCCCCCC-eEE
Q 024295           19 STSRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAW--KEAKVEKGS-SVA   89 (269)
Q Consensus        19 ~~~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~--~~~~~~~~~-~vl   89 (269)
                      |+.++++ ||+|++..      .+|+|+||++++++.++++|+++++++||++++.++|||+++.  .+.++++++ +||
T Consensus        73 Gv~~~~v-GdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~Vl  151 (324)
T 3nx4_A           73 EDPRFHA-GQEVLLTGWGVGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVV  151 (324)
T ss_dssp             SSTTCCT-TCEEEEECTTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEE
T ss_pred             CCCCCCC-CCEEEEcccccCCCCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEE
Confidence            4677999 99998652      5699999999999999999999999999999999999999886  445676632 499


Q ss_pred             EEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChh
Q 024295           90 VLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS  168 (269)
Q Consensus        90 I~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~  168 (269)
                      |+|+ |++|++++|+||..|+ +|+++++++++.+.++++|+++++|+++   .+.   +++++++ ++|++||++|++ 
T Consensus       152 V~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~~~---~~~~~~~-~~d~v~d~~g~~-  222 (324)
T 3nx4_A          152 VTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGANRILSRDE---FAE---SRPLEKQ-LWAGAIDTVGDK-  222 (324)
T ss_dssp             ESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTCSEEEEGGG---SSC---CCSSCCC-CEEEEEESSCHH-
T ss_pred             EECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEecCC---HHH---HHhhcCC-CccEEEECCCcH-
Confidence            9997 9999999999999999 9999999999999999999999998865   332   4555555 899999999987 


Q ss_pred             HHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC---CCcHHHHHHHHHCCCCCCCcceeEEe
Q 024295          169 LLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT---KSDLPTLLDKCKNKEFKLHQLLTHHV  245 (269)
Q Consensus       169 ~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~  245 (269)
                      .++.++++++++ |+++.+|.......+++...++.+++++.+++...+..   .+.++.+++++.+|+++  +. +++|
T Consensus       223 ~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~-~~~~  298 (324)
T 3nx4_A          223 VLAKVLAQMNYG-GCVAACGLAGGFALPTTVMPFILRNVRLQGVDSVMTPPARRAEAWARLVKDLPESFYA--QA-ATEI  298 (324)
T ss_dssp             HHHHHHHTEEEE-EEEEECCCTTCSEEEEESHHHHHHCCEEEECCSTTCCHHHHHHHHHHHHHHSCHHHHH--HH-EEEE
T ss_pred             HHHHHHHHHhcC-CEEEEEecCCCCCCCCCHHHHhhcCeEEEEEeccccChHHHHHHHHHHHHHHHcCCCC--CC-ceeE
Confidence            889999999996 99999998765445667777878999999986543321   14578889999999865  34 8899


Q ss_pred             ehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          246 KLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       246 ~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      |++++++||+.+.+++. +|+|+++
T Consensus       299 ~l~~~~~A~~~~~~~~~~gkvvv~~  323 (324)
T 3nx4_A          299 TLADAPKFADAIINNQVQGRTLVKI  323 (324)
T ss_dssp             EGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             eHHHHHHHHHHHHhCCCCceEEEec
Confidence            99999999999988876 6999975

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=7.5e-35  Score=249.49  Aligned_cols=237  Identities=21%  Similarity=0.349  Sum_probs=201.6

Q ss_pred             ccccCCceeeeecCeEEeee-----------------------------------eccCcccceEeeccCceEEcCCCCC
Q 024295           14 GLMLDSTSRMSVRGQKLYHI-----------------------------------FSCSTWSEYMVIDANYVVKVDPSID   58 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~-----------------------------------~~~g~~a~~~~v~~~~~~~vp~~~~   58 (269)
                      -.+|+++.++++ ||+|+..                                   ..+|+||||++++++.++++|++++
T Consensus        83 ~~vG~~V~~~~v-GDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls  161 (366)
T 1yqd_A           83 TEVGSKVKKVNV-GDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMP  161 (366)
T ss_dssp             EEECTTCCSCCT-TCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEECCTTSC
T ss_pred             EEECCCCCcCCC-CCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccccCCCcCCCccccEEEEchhhEEECCCCCC
Confidence            345889999999 9999731                                   1459999999999999999999999


Q ss_pred             cccccccccchhhhHHHHHHhcCCC-CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCceeeCC
Q 024295           59 PSDASFLSCGFTTGYGAAWKEAKVE-KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMTDFINP  136 (269)
Q Consensus        59 ~~~aa~~~~~~~~a~~~l~~~~~~~-~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~~v~~~  136 (269)
                      +++|+++++++.|||+++. ..+++ ++++|||+|+|++|++++|+|+..|+ +|+++++++++.+.++ ++|+++++++
T Consensus       162 ~~~aa~l~~~~~ta~~al~-~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~v~~~  239 (366)
T 1yqd_A          162 LDGGAPLLCAGITVYSPLK-YFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNFGADSFLVS  239 (366)
T ss_dssp             TTTTGGGGTHHHHHHHHHH-HTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTSCCSEEEET
T ss_pred             HHHhhhhhhhHHHHHHHHH-hcCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCceEEec
Confidence            9999999999999999975 46787 99999999999999999999999999 9999999999999887 8999999987


Q ss_pred             CCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccC
Q 024295          137 DDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGG  216 (269)
Q Consensus       137 ~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (269)
                      .+   .   +.+.+.++  ++|++||++|.+..++.++++++++ |+++.+|.... ..+++...++.+++++.++....
T Consensus       240 ~~---~---~~~~~~~~--~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~  309 (366)
T 1yqd_A          240 RD---Q---EQMQAAAG--TLDGIIDTVSAVHPLLPLFGLLKSH-GKLILVGAPEK-PLELPAFSLIAGRKIVAGSGIGG  309 (366)
T ss_dssp             TC---H---HHHHHTTT--CEEEEEECCSSCCCSHHHHHHEEEE-EEEEECCCCSS-CEEECHHHHHTTTCEEEECCSCC
T ss_pred             cC---H---HHHHHhhC--CCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEccCCC-CCCcCHHHHHhCCcEEEEecCCC
Confidence            64   3   34555543  8999999999865678999999996 99999997653 44567777888999999986533


Q ss_pred             CCCCCcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          217 IKTKSDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       217 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                         .+++.++++++.+|++++.  + ++||++++++||+.+.+++. +|+|+++
T Consensus       310 ---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvvl~~  357 (366)
T 1yqd_A          310 ---MKETQEMIDFAAKHNITAD--I-EVISTDYLNTAMERLAKNDVRYRFVIDV  357 (366)
T ss_dssp             ---HHHHHHHHHHHHHTTCCCC--E-EEECGGGHHHHHHHHHTTCCSSEEEECH
T ss_pred             ---HHHHHHHHHHHHcCCCCCc--e-EEEcHHHHHHHHHHHHcCCcceEEEEEc
Confidence               3578999999999997764  4 68999999999999988775 6999863

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=6.7e-36  Score=252.82  Aligned_cols=241  Identities=19%  Similarity=0.218  Sum_probs=194.3

Q ss_pred             CCceeeeecCeEEeeee------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHH--HhcCCCCCC-eE
Q 024295           18 DSTSRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAW--KEAKVEKGS-SV   88 (269)
Q Consensus        18 ~~~~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~--~~~~~~~~~-~v   88 (269)
                      .++.++++ ||+|++..      .+|+||||++++++.++++|+++++++|+++++++.|||.++.  .+.++++++ +|
T Consensus        76 ~~v~~~~v-GdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~V  154 (330)
T 1tt7_A           76 SNDPRFAE-GDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSV  154 (330)
T ss_dssp             CSSTTCCT-TCEEEEESTTBTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCE
T ss_pred             cCCCCCCC-CCEEEEcccccCCCCCccceeEEEecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceE
Confidence            35677999 99998652      4699999999999999999999999999999999999998875  356788886 99


Q ss_pred             EEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh
Q 024295           89 AVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP  167 (269)
Q Consensus        89 lI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~  167 (269)
                      ||+|+ |++|++++|+++..|+ +|+++++++++++.++++|+++++|+.+   .+ .+.+++.+++ ++|++||++|++
T Consensus       155 lV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~~v~~~~~---~~-~~~~~~~~~~-~~d~vid~~g~~  228 (330)
T 1tt7_A          155 LVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISRED---VY-DGTLKALSKQ-QWQGAVDPVGGK  228 (330)
T ss_dssp             EEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHH---HC-SSCCCSSCCC-CEEEEEESCCTH
T ss_pred             EEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCcEEEECCC---ch-HHHHHHhhcC-CccEEEECCcHH
Confidence            99997 9999999999999999 8999999999999999999999987643   21 1123334433 899999999985


Q ss_pred             hHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC---CCcHHHHHHHHHCCCCCCCcceeEE
Q 024295          168 SLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT---KSDLPTLLDKCKNKEFKLHQLLTHH  244 (269)
Q Consensus       168 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~  244 (269)
                       .+..++++++++ |+++.+|.......+++...++.+++++.|++......   .+.++.+.+++.+|++  +++++++
T Consensus       229 -~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g~l--~~~i~~~  304 (330)
T 1tt7_A          229 -QLASLLSKIQYG-GSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQL--LTIVDRE  304 (330)
T ss_dssp             -HHHHHHTTEEEE-EEEEECCCSSCSCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHHTTTTSCCSCS--TTSEEEE
T ss_pred             -HHHHHHHhhcCC-CEEEEEecCCCCccCcchHHHHhcCeEEEEEeccccCHHHHHHHHHHHHHHHhcCCc--ccccceE
Confidence             889999999996 99999997654344566666777999999985322211   1235556666777875  4568899


Q ss_pred             eehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          245 VKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       245 ~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ||++++++||+.+.+++. +|+|+++
T Consensus       305 ~~l~~~~~A~~~~~~~~~~gKvvi~~  330 (330)
T 1tt7_A          305 VSLEETPGALKDILQNRIQGRVIVKL  330 (330)
T ss_dssp             ECSTTHHHHHHHTTTTCCSSEEEECC
T ss_pred             EcHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            999999999999988765 6999874

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=1.4e-34  Score=247.47  Aligned_cols=244  Identities=21%  Similarity=0.232  Sum_probs=204.0

Q ss_pred             ccccCCce-eeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295           14 GLMLDSTS-RMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG   92 (269)
Q Consensus        14 ~~vg~~~~-~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G   92 (269)
                      -.+|+++. ++++ ||+|++.. +|+||||++++++.++++|+. + .++++++++++|||+++.+.++++++++|||+|
T Consensus        96 ~~vG~~V~~~~~v-GdrV~~~~-~G~~aey~~v~~~~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~G  171 (362)
T 2c0c_A           96 VALGLSASARYTV-GQAVAYMA-PGSFAEYTVVPASIATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTA  171 (362)
T ss_dssp             EEECTTGGGTCCT-TCEEEEEC-SCCSBSEEEEEGGGCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETT
T ss_pred             EEECCCccCCCCC-CCEEEEcc-CCcceeEEEEcHHHeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeC
Confidence            34588888 8999 99998765 599999999999999999996 3 456778889999999998889999999999999


Q ss_pred             -CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHH
Q 024295           93 -LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS  171 (269)
Q Consensus        93 -~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~  171 (269)
                       +|++|++++|+++..|+ +|+++++++++.+.++++|++.++++++   .++.+.+++.+++ ++|++|||+|.. .++
T Consensus       172 a~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~---~~~~~~~~~~~~~-g~D~vid~~g~~-~~~  245 (362)
T 2c0c_A          172 AAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSLGCDRPINYKT---EPVGTVLKQEYPE-GVDVVYESVGGA-MFD  245 (362)
T ss_dssp             TTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTT---SCHHHHHHHHCTT-CEEEEEECSCTH-HHH
T ss_pred             CCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcCCcEEEecCC---hhHHHHHHHhcCC-CCCEEEECCCHH-HHH
Confidence             59999999999999999 9999999999999999999999999886   7788888887654 899999999985 889


Q ss_pred             HHHHHcccCCcEEEEEccCCCcc--c--------cchhHhhhhCCceEEeeeccCCC--CCCcHHHHHHHHHCCCCCCCc
Q 024295          172 EALETTKVGKGKVIVIGVGVDAM--V--------PLNVIALACGGRTLKGTTFGGIK--TKSDLPTLLDKCKNKEFKLHQ  239 (269)
Q Consensus       172 ~~~~~l~~~~G~~v~~g~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~~~  239 (269)
                      .++++++++ |+++.+|......  .        .+ ...++.+++++.|++...+.  ..+.++++++++.+|++++..
T Consensus       246 ~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~  323 (362)
T 2c0c_A          246 LAVDALATK-GRLIVIGFISGYQTPTGLSPVKAGTL-PAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEV  323 (362)
T ss_dssp             HHHHHEEEE-EEEEECCCGGGTTSSSCCCCCCCTTH-HHHHHHHTCEEEECCGGGCGGGHHHHHHHHHHHHHTTCSCCCE
T ss_pred             HHHHHHhcC-CEEEEEeCCCCcCccccccccccccc-HHHHHhhcceEEEEEhhhhhhhHHHHHHHHHHHHHCCCeEeee
Confidence            999999996 9999998754311  0        22 24566799999998754432  135688999999999987653


Q ss_pred             c------eeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          240 L------LTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       240 ~------~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      .      +++.+|++++++||+.+.+++. +|+|+++
T Consensus       324 ~~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  360 (362)
T 2c0c_A          324 DLGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVEL  360 (362)
T ss_dssp             ECSTTSTTCSCBSTTHHHHHHHHHHTTCCSBEEEEEC
T ss_pred             ccccccccccccCHHHHHHHHHHHHcCCCCceEEEEc
Confidence            3      3456899999999999988765 7999874

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=3.5e-35  Score=272.61  Aligned_cols=243  Identities=18%  Similarity=0.209  Sum_probs=205.9

Q ss_pred             cccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG   92 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G   92 (269)
                      +-.+|+++.++++ ||+|++... |+|+||++++++.++++|+++++++|+++++.++|||+++.+.+++++|++|||+|
T Consensus       276 V~~vG~~V~~~~v-GDrV~~~~~-G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~g  353 (795)
T 3slk_A          276 VVETGPGVTGLAP-GDRVMGMIP-KAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHS  353 (795)
T ss_dssp             EEEECSSCCSSCT-TCEEEECCS-SCSSSEEEEETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEES
T ss_pred             EEEeCCCCCcCCC-CCEEEEEec-CCCcCEEEeehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEec
Confidence            3456899999999 999998764 99999999999999999999999999999999999999998899999999999999


Q ss_pred             C-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHH
Q 024295           93 L-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLS  171 (269)
Q Consensus        93 ~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~  171 (269)
                      + |++|++++|+||..|+ +|+++++++ +.+.++ +|+++++++++   .++.+.+++.+++.++|+|||++|++ .+.
T Consensus       354 aaGgvG~~aiqlAk~~Ga-~V~~t~~~~-k~~~l~-lga~~v~~~~~---~~~~~~i~~~t~g~GvDvVld~~gg~-~~~  426 (795)
T 3slk_A          354 AAGGVGMAAIQLARHLGA-EVYATASED-KWQAVE-LSREHLASSRT---CDFEQQFLGATGGRGVDVVLNSLAGE-FAD  426 (795)
T ss_dssp             TTBHHHHHHHHHHHHTTC-CEEEECCGG-GGGGSC-SCGGGEECSSS---STHHHHHHHHSCSSCCSEEEECCCTT-TTH
T ss_pred             CCCHHHHHHHHHHHHcCC-EEEEEeChH-Hhhhhh-cChhheeecCC---hhHHHHHHHHcCCCCeEEEEECCCcH-HHH
Confidence            6 9999999999999999 899998655 666665 99999999987   89999999999999999999999886 779


Q ss_pred             HHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCC---CCCcHHHHHHHHHCCCCCCCcceeEEeehh
Q 024295          172 EALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIK---TKSDLPTLLDKCKNKEFKLHQLLTHHVKLE  248 (269)
Q Consensus       172 ~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  248 (269)
                      .++++++++ |+++.+|.... ..+.... ...+++++.+.......   ..+.+.++++++++|++++  +++++||++
T Consensus       427 ~~l~~l~~~-Gr~v~iG~~~~-~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~g~l~p--~~~~~~~l~  501 (795)
T 3slk_A          427 ASLRMLPRG-GRFLELGKTDV-RDPVEVA-DAHPGVSYQAFDTVEAGPQRIGEMLHELVELFEGRVLEP--LPVTAWDVR  501 (795)
T ss_dssp             HHHTSCTTC-EEEEECCSTTC-CCHHHHH-HHSSSEEEEECCGGGGHHHHHHHHHHHHHHHHHTTSCCC--CCEEEEEGG
T ss_pred             HHHHHhcCC-CEEEEeccccc-cCccccc-ccCCCCEEEEeeccccCHHHHHHHHHHHHHHHHcCCcCC--CcceeEcHH
Confidence            999999996 99999997653 1111221 22377777776543211   1246889999999999654  578899999


Q ss_pred             hHHHHHHHhcCCCe-eeEEeeC
Q 024295          249 EIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       249 ~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++++||+.+.+++. +|+||++
T Consensus       502 ~~~eA~~~l~~g~~~GKvVl~~  523 (795)
T 3slk_A          502 QAPEALRHLSQARHVGKLVLTM  523 (795)
T ss_dssp             GHHHHHHHHHHTCCCBEEEEEC
T ss_pred             HHHHHHHHHhcCCccceEEEec
Confidence            99999999988776 6999874

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.4e-35  Score=247.59  Aligned_cols=239  Identities=17%  Similarity=0.213  Sum_probs=189.4

Q ss_pred             CCceeeeecCeEEeeee------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHH--HhcCCCCCC-eE
Q 024295           18 DSTSRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAW--KEAKVEKGS-SV   88 (269)
Q Consensus        18 ~~~~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~--~~~~~~~~~-~v   88 (269)
                      .++.++++ ||+|++..      .+|+|+||++++++.++++|+++++++|+++++++.|||.++.  .+.++++++ +|
T Consensus        75 ~~v~~~~v-GdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~V  153 (328)
T 1xa0_A           75 SQHPRFRE-GDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPV  153 (328)
T ss_dssp             CCSSSCCT-TCEEEEESTTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCE
T ss_pred             cCCCCCCC-CCEEEEccccCCCCCCccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceE
Confidence            46677999 99998652      3699999999999999999999999999999999999998875  357788886 99


Q ss_pred             EEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh
Q 024295           89 AVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP  167 (269)
Q Consensus        89 lI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~  167 (269)
                      ||+|+ |++|++++|+++..|+ +|+++++++++++.++++|+++++|+.+   .+ .+.+++.+++ ++|++||++|++
T Consensus       154 lV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~---~~-~~~~~~~~~~-~~d~vid~~g~~  227 (328)
T 1xa0_A          154 LVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKEVLARED---VM-AERIRPLDKQ-RWAAAVDPVGGR  227 (328)
T ss_dssp             EESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSEEEECC-------------CCSC-CEEEEEECSTTT
T ss_pred             EEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCcEEEecCC---cH-HHHHHHhcCC-cccEEEECCcHH
Confidence            99997 9999999999999999 8999999999999999999999998765   33 3445555544 899999999985


Q ss_pred             hHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC---CCcHHHHHHHHHCCCCCCCcceeEE
Q 024295          168 SLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT---KSDLPTLLDKCKNKEFKLHQLLTHH  244 (269)
Q Consensus       168 ~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~  244 (269)
                       .+..++++++++ |+++.+|.......+++...++.+++++.|+.......   .+.++.+.++++++ ++  + ++++
T Consensus       228 -~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g-l~--~-~~~~  301 (328)
T 1xa0_A          228 -TLATVLSRMRYG-GAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSVYCPMDLRLRIWERLAGDLKPD-LE--R-IAQE  301 (328)
T ss_dssp             -THHHHHHTEEEE-EEEEECSCCSSSCCCCCSHHHHHTTCEEEECCSSSCCHHHHHHHHHHHHTTTCCC-HH--H-HEEE
T ss_pred             -HHHHHHHhhccC-CEEEEEeecCCCCCCCchhhhhhcCceEEEEecccCCHHHHHHHHHHHHHHHHcC-Cc--e-eeeE
Confidence             789999999996 99999997654344556666777999999975322211   12345566666666 43  3 3689


Q ss_pred             eehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          245 VKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       245 ~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ||++++++||+.+.+++. +|+|+++
T Consensus       302 ~~l~~~~~A~~~~~~~~~~gKvvv~~  327 (328)
T 1xa0_A          302 ISLAELPQALKRILRGELRGRTVVRL  327 (328)
T ss_dssp             EEGGGHHHHHHHHHHTCCCSEEEEEC
T ss_pred             eCHHHHHHHHHHHHcCCCCCeEEEEe
Confidence            999999999999977665 6999875

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=4.7e-34  Score=245.41  Aligned_cols=242  Identities=16%  Similarity=0.197  Sum_probs=196.0

Q ss_pred             ccccCCceeeeecCeEEeeeec---cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcC----CCCCC
Q 024295           14 GLMLDSTSRMSVRGQKLYHIFS---CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAK----VEKGS   86 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~~---~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~----~~~~~   86 (269)
                      -.+|+++.++++ ||+|++...   +|+||||++++++.++++|+++++++||+++++++|||+++.+.++    +++++
T Consensus       107 ~~vG~~V~~~~v-GDrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~  185 (375)
T 2vn8_A          107 MECGLDVKYFKP-GDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGK  185 (375)
T ss_dssp             EEECTTCCSCCT-TCEEEEECCTTSCCSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTC
T ss_pred             EEeCCCCCCCCC-CCEEEEecCCCCCccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCC
Confidence            345889999999 999997653   6999999999999999999999999999999899999999877888    99999


Q ss_pred             eEEEEc-CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           87 SVAVLG-LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        87 ~vlI~G-~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      +|||+| +|++|++++|+++..|+ +|++++ ++++.+.++++|+++++++.+   .++.+.+++.   .++|++||++|
T Consensus       186 ~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~~~~---~~~~~~~~~~---~g~D~vid~~g  257 (375)
T 2vn8_A          186 RVLILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELVRKLGADDVIDYKS---GSVEEQLKSL---KPFDFILDNVG  257 (375)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHHTTCSEEEETTS---SCHHHHHHTS---CCBSEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHHHcCCCEEEECCc---hHHHHHHhhc---CCCCEEEECCC
Confidence            999999 59999999999999999 899998 678999999999999999886   7787777653   38999999999


Q ss_pred             Ch-hHHHHHHHHcccCCcEEEEEccCCCcccc---chh------Hhhhh-------CCceEEeeeccCCCCCCcHHHHHH
Q 024295          166 VP-SLLSEALETTKVGKGKVIVIGVGVDAMVP---LNV------IALAC-------GGRTLKGTTFGGIKTKSDLPTLLD  228 (269)
Q Consensus       166 ~~-~~~~~~~~~l~~~~G~~v~~g~~~~~~~~---~~~------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  228 (269)
                      ++ ..+..++++++++ |+++.+|........   ++.      ..++.       ++..+.....  ....+.++++++
T Consensus       258 ~~~~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~  334 (375)
T 2vn8_A          258 GSTETWAPDFLKKWSG-ATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFF--MASGPCLDDIAE  334 (375)
T ss_dssp             TTHHHHGGGGBCSSSC-CEEEESCCSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEECCC--CCCHHHHHHHHH
T ss_pred             ChhhhhHHHHHhhcCC-cEEEEeCCCcccccccccccchhheeehhhccccccccccCcceEEEEe--CCCHHHHHHHHH
Confidence            87 4568888999996 999999865421110   111      11222       3444433221  112356899999


Q ss_pred             HHHCCCCCCCcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          229 KCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       229 l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++.+|+++  +.++++||++++++||+.+.+++. +|+|+++
T Consensus       335 l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  374 (375)
T 2vn8_A          335 LVDAGKIR--PVIEQTFPFSKVPEAFLKVERGHARGKTVINV  374 (375)
T ss_dssp             HHHTTSCC--CCEEEEEEGGGHHHHHHHHHHCCCSSEEEEEC
T ss_pred             HHHCCCcc--cCcCeEECHHHHHHHHHHHHcCCCCCeEEEEe
Confidence            99999965  568899999999999999987764 6999875

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=1.5e-34  Score=241.63  Aligned_cols=237  Identities=17%  Similarity=0.240  Sum_probs=193.5

Q ss_pred             cCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-Ch
Q 024295           17 LDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GT   95 (269)
Q Consensus        17 g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g~   95 (269)
                      |......-. ||+|++...+|+|+||++++++.++++|++++++++|+++++++|||+++.+.+ ++++++|||+|+ |+
T Consensus        60 G~e~~G~V~-GdrV~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~  137 (302)
T 1iz0_A           60 GMEVVGVVE-GRRYAALVPQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGA  137 (302)
T ss_dssp             CCEEEEEET-TEEEEEECSSCCSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBH
T ss_pred             cceEEEEEE-CcEEEEecCCcceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcH
Confidence            444444444 999998877899999999999999999999999999999999999999998777 999999999997 99


Q ss_pred             hHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHH
Q 024295           96 VGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE  175 (269)
Q Consensus        96 ~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~  175 (269)
                      +|++++|+++..|+ +|+++++++++.+.++++|+++++++++  ..++.+.+      .++|++|| +|.+ .+..+++
T Consensus       138 vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~~--~~~~~~~~------~~~d~vid-~g~~-~~~~~~~  206 (302)
T 1iz0_A          138 LGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYAE--VPERAKAW------GGLDLVLE-VRGK-EVEESLG  206 (302)
T ss_dssp             HHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEEGGG--HHHHHHHT------TSEEEEEE-CSCT-THHHHHT
T ss_pred             HHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEECCc--chhHHHHh------cCceEEEE-CCHH-HHHHHHH
Confidence            99999999999999 9999999999999999999999887641  02333333      38999999 9884 8899999


Q ss_pred             HcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC-CCCCcHHHHHH---HHHCCCCCCCcceeEEeehhhHH
Q 024295          176 TTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI-KTKSDLPTLLD---KCKNKEFKLHQLLTHHVKLEEID  251 (269)
Q Consensus       176 ~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---l~~~g~~~~~~~~~~~~~~~~~~  251 (269)
                      +++++ |+++.+|.......+++...++.+++++.++.+..+ ...+.++++++   ++.+|+++  +.++++||+++++
T Consensus       207 ~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~  283 (302)
T 1iz0_A          207 LLAHG-GRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRLGRELR--PVVGPVFPFAEAE  283 (302)
T ss_dssp             TEEEE-EEEEEC-------CCCCTTHHHHTTCEEEECCHHHHTTCHHHHHHHHHHHGGGBTTTBC--CCEEEEEEGGGHH
T ss_pred             hhccC-CEEEEEeCCCCCCCCcCHHHHHhCCCeEEEEeccchhhhHHHHHHHHhhhHHHHcCCcc--cccceEEcHHHHH
Confidence            99996 999999976542234566667779999999875422 12356888999   99999965  5688999999999


Q ss_pred             HHHHHhcCCCe-eeEEeeC
Q 024295          252 KAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       252 ~a~~~~~~~~~-~k~vl~~  269 (269)
                      +||+.+.+++. +|+|+++
T Consensus       284 ~A~~~~~~~~~~gKvvv~~  302 (302)
T 1iz0_A          284 AAFRALLDRGHTGKVVVRL  302 (302)
T ss_dssp             HHHHHTTCTTCCBEEEEEC
T ss_pred             HHHHHHHcCCCCceEEEeC
Confidence            99999988765 6999874

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=1.3e-34  Score=248.04  Aligned_cols=220  Identities=16%  Similarity=0.172  Sum_probs=187.9

Q ss_pred             ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHH--H--hcCCC--C-------CCeEEEEcCChhHHHHH
Q 024295           35 SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAW--K--EAKVE--K-------GSSVAVLGLGTVGLGAV  101 (269)
Q Consensus        35 ~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~--~--~~~~~--~-------~~~vlI~G~g~~G~~a~  101 (269)
                      .+|+||||++++++.++++|++++ ++|+ ++.++.|||+++.  .  .++++  +       +++|||+|+|++|++++
T Consensus       120 ~~G~~aey~~v~~~~~~~iP~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~  197 (366)
T 2cdc_A          120 MDGFMREWWYDDPKYLVKIPKSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFT  197 (366)
T ss_dssp             ECCSCBSEEEECGGGEEEECGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHH
T ss_pred             CCCceeEEEEechHHeEECcCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHH
Confidence            459999999999999999999999 8876 5679999999987  4  78898  8       99999999999999999


Q ss_pred             HHHHHcCCCeEEEEcCCc---chHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHH-HHHHHHc
Q 024295          102 DGARMHGAAKIIGIDKNP---WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLL-SEALETT  177 (269)
Q Consensus       102 ~la~~~g~~~v~~~~~~~---~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~-~~~~~~l  177 (269)
                      |+++..|+ +|+++++++   ++.+.++++|++++ | .    .++.+.+++ ++ .++|++||++|.+..+ +.+++++
T Consensus       198 q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~ga~~v-~-~----~~~~~~~~~-~~-~~~d~vid~~g~~~~~~~~~~~~l  268 (366)
T 2cdc_A          198 LLFRTYGL-EVWMANRREPTEVEQTVIEETKTNYY-N-S----SNGYDKLKD-SV-GKFDVIIDATGADVNILGNVIPLL  268 (366)
T ss_dssp             HHHHHHTC-EEEEEESSCCCHHHHHHHHHHTCEEE-E-C----TTCSHHHHH-HH-CCEEEEEECCCCCTHHHHHHGGGE
T ss_pred             HHHHhCCC-EEEEEeCCccchHHHHHHHHhCCcee-c-h----HHHHHHHHH-hC-CCCCEEEECCCChHHHHHHHHHHH
Confidence            99999999 999999998   89999999999988 6 4    255566666 55 4899999999987678 8999999


Q ss_pred             ccCCcEEEEEccCCCccccchhHh---hhhCCceEEeeeccCCCCCCcHHHHHHHHHCCCCC----CCcceeEEeehhhH
Q 024295          178 KVGKGKVIVIGVGVDAMVPLNVIA---LACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFK----LHQLLTHHVKLEEI  250 (269)
Q Consensus       178 ~~~~G~~v~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~----~~~~~~~~~~~~~~  250 (269)
                      +++ |+++.+|.......+++...   ++.+++++.|+...   ..++++++++++.+|+++    ++++++++||++++
T Consensus       269 ~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~  344 (366)
T 2cdc_A          269 GRN-GVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVNG---QKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDE  344 (366)
T ss_dssp             EEE-EEEEECSCCCSCEEEEEHHHHHHHHHTTCEEEECCCC---CHHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCH
T ss_pred             hcC-CEEEEEecCCCCccccChhhhHHHHhcCcEEEEecCC---CHHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHH
Confidence            996 99999997654335667666   77899999997643   246799999999999977    77888999999999


Q ss_pred             HHHHHH--hcCCCeeeEEeeC
Q 024295          251 DKAIQL--LKQPDCVKVLITI  269 (269)
Q Consensus       251 ~~a~~~--~~~~~~~k~vl~~  269 (269)
                      ++||+.  ++.+..+|+||++
T Consensus       345 ~~A~~~l~~~~~~~gKvvi~~  365 (366)
T 2cdc_A          345 KELLKVLREKEHGEIKIRILW  365 (366)
T ss_dssp             HHHHHHHHCCCTTCCEEEEEC
T ss_pred             HHHHHHHhhhcCCceEEEEec
Confidence            999998  6654557999975

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=1.2e-33  Score=241.44  Aligned_cols=240  Identities=18%  Similarity=0.213  Sum_probs=201.8

Q ss_pred             CCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCC-----CcccccccccchhhhHHHHHHhcCCCCC--CeEEE
Q 024295           18 DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSI-----DPSDASFLSCGFTTGYGAAWKEAKVEKG--SSVAV   90 (269)
Q Consensus        18 ~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~-----~~~~aa~~~~~~~~a~~~l~~~~~~~~~--~~vlI   90 (269)
                      +++.++++ ||+|++..  |+|+||++++++.++++|+++     +++ +++++++++|||+++.+.++++++  ++|||
T Consensus        91 ~~v~~~~v-GdrV~~~~--G~~aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI  166 (357)
T 2zb4_A           91 SKHTNLTK-GDFVTSFY--WPWQTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVV  166 (357)
T ss_dssp             ECSTTCCT-TCEEEEEE--EESBSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEE
T ss_pred             cCCCCCCC-CCEEEecC--CCcEEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEE
Confidence            45667899 99998764  789999999999999999999     555 667888999999999888999999  99999


Q ss_pred             EcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChh
Q 024295           91 LGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS  168 (269)
Q Consensus        91 ~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~  168 (269)
                      +|+ |++|++++|+++..|+++|+++++++++.+.+++ +|+++++|+.+   .++.+.+.+.+++ ++|++||++|. .
T Consensus       167 ~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~---~~~~~~~~~~~~~-~~d~vi~~~G~-~  241 (357)
T 2zb4_A          167 SGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKK---DNVAEQLRESCPA-GVDVYFDNVGG-N  241 (357)
T ss_dssp             SSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTT---SCHHHHHHHHCTT-CEEEEEESCCH-H
T ss_pred             ECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCc---hHHHHHHHHhcCC-CCCEEEECCCH-H
Confidence            997 9999999999999998889999999999998887 99999999876   7888889888877 99999999997 4


Q ss_pred             HHHHHHHHcccCCcEEEEEccCCCc--cccch-------hHhhhhCCceEEeeeccCCC--CCCcHHHHHHHHHCCCCCC
Q 024295          169 LLSEALETTKVGKGKVIVIGVGVDA--MVPLN-------VIALACGGRTLKGTTFGGIK--TKSDLPTLLDKCKNKEFKL  237 (269)
Q Consensus       169 ~~~~~~~~l~~~~G~~v~~g~~~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g~~~~  237 (269)
                      .++.++++++++ |+++.+|.....  ..+++       ...++.+++++.++....+.  ..+.++++++++.+|++++
T Consensus       242 ~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~  320 (357)
T 2zb4_A          242 ISDTVISQMNEN-SHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKI  320 (357)
T ss_dssp             HHHHHHHTEEEE-EEEEECCCGGGTTSCCCSSCCCCHHHHHHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHhccC-cEEEEECCccccccCccccccchhhhhhhhhcceeEEEEeehhhhhHHHHHHHHHHHHHHHcCCCcC
Confidence            789999999996 999999976431  22221       13566799999998654321  1356889999999999877


Q ss_pred             CcceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          238 HQLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       238 ~~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      .  +..+||++++++||+.+.+++. +|+|+++
T Consensus       321 ~--~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  351 (357)
T 2zb4_A          321 K--ETVINGLENMGAAFQSMMTGGNIGKQIVCI  351 (357)
T ss_dssp             C--EEEEECGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred             c--cceecCHHHHHHHHHHHHcCCCCceEEEEE
Confidence            6  4456999999999999988765 6999875

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=1.5e-33  Score=239.88  Aligned_cols=244  Identities=20%  Similarity=0.250  Sum_probs=201.7

Q ss_pred             cccccCCceeeeecCeEEeeeeccCcccceEeeccCc--eEEcCC---CCCcccccccccchhhhHHHHHHhcCCCCCCe
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANY--VVKVDP---SIDPSDASFLSCGFTTGYGAAWKEAKVEKGSS   87 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~--~~~vp~---~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~   87 (269)
                      .|++++++.++++ ||+|++.   |+|+||++++++.  ++++|+   +++++ +++++++++|||+++.+.++++++++
T Consensus        84 ~GvV~~~v~~~~v-GdrV~~~---g~~aey~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~  158 (345)
T 2j3h_A           84 SRIIESGHPDYKK-GDLLWGI---VAWEEYSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGET  158 (345)
T ss_dssp             EEEEEECSTTCCT-TCEEEEE---EESBSEEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCE
T ss_pred             EEEEecCCCCCCC-CCEEEee---cCceeEEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCE
Confidence            3558888888999 9999865   7899999999876  999996   35555 67788899999999988899999999


Q ss_pred             EEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           88 VAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        88 vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      |||+|+ |++|++++|+++..|+ +|+++++++++.+.++ ++|+++++|+.+  ..++.+.+++.++ .++|++||++|
T Consensus       159 vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~~~~~~~~-~~~d~vi~~~g  234 (345)
T 2j3h_A          159 VYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKE--ESDLTAALKRCFP-NGIDIYFENVG  234 (345)
T ss_dssp             EEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTSCCSEEEETTS--CSCSHHHHHHHCT-TCEEEEEESSC
T ss_pred             EEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEecCC--HHHHHHHHHHHhC-CCCcEEEECCC
Confidence            999996 9999999999999999 9999999999999998 799999988764  2367778887765 48999999999


Q ss_pred             ChhHHHHHHHHcccCCcEEEEEccCCCc-----cccchhHhhhhCCceEEeeeccCCCC--CCcHHHHHHHHHCCCCCCC
Q 024295          166 VPSLLSEALETTKVGKGKVIVIGVGVDA-----MVPLNVIALACGGRTLKGTTFGGIKT--KSDLPTLLDKCKNKEFKLH  238 (269)
Q Consensus       166 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~~  238 (269)
                      .+ .+..++++++++ |+++.+|.....     ...++...++.+++++.++....+..  .+.+.++++++.+|+++  
T Consensus       235 ~~-~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~i~--  310 (345)
T 2j3h_A          235 GK-MLDAVLVNMNMH-GRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKIT--  310 (345)
T ss_dssp             HH-HHHHHHTTEEEE-EEEEECCCGGGTTCSSCCCBSCTTHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSC--
T ss_pred             HH-HHHHHHHHHhcC-CEEEEEccccccccCCccccccHHHHhhhceeeceeeehhhhhhHHHHHHHHHHHHHCCCCc--
Confidence            84 889999999996 999999875421     23455566777999999876543211  13488899999999976  


Q ss_pred             cceeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          239 QLLTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       239 ~~~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                      +.+.++|+++++++||+.+.+++. +|+|+++
T Consensus       311 ~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  342 (345)
T 2j3h_A          311 YVEDVADGLEKAPEALVGLFHGKNVGKQVVVV  342 (345)
T ss_dssp             CCEEEEESGGGSHHHHHHHHTTCCSSEEEEES
T ss_pred             CcccccCCHHHHHHHHHHHHcCCCceEEEEEe
Confidence            456678999999999999988765 6999874

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=9.4e-33  Score=233.79  Aligned_cols=242  Identities=19%  Similarity=0.186  Sum_probs=199.6

Q ss_pred             ccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCC----CCccc-ccccccchhhhHHHHHHhcCCCCCCeEEE
Q 024295           16 MLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPS----IDPSD-ASFLSCGFTTGYGAAWKEAKVEKGSSVAV   90 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~----~~~~~-aa~~~~~~~~a~~~l~~~~~~~~~~~vlI   90 (269)
                      +..++.++++ ||+|++.   |+|+||++++++.++++|++    +++++ +++++++++|||+++.+.++++++++|||
T Consensus        76 v~~~v~~~~v-GdrV~~~---g~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV  151 (333)
T 1v3u_A           76 VESKNSAFPA-GSIVLAQ---SGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLV  151 (333)
T ss_dssp             EEESCTTSCT-TCEEEEC---CCSBSEEEESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEE
T ss_pred             EecCCCCCCC-CCEEEec---CceEEEEEechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEE
Confidence            3456778999 9999874   78999999999999999997    88887 47888899999999988899999999999


Q ss_pred             EcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhH
Q 024295           91 LGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSL  169 (269)
Q Consensus        91 ~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~  169 (269)
                      +|+ |++|++++|+++..|+ +|+++++++++.+.++++|+++++|..+  ..++.+.+.+.+++ ++|++||++|.+ .
T Consensus       152 ~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~~~~~~~~~-~~d~vi~~~g~~-~  226 (333)
T 1v3u_A          152 SAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKT--VNSLEEALKKASPD-GYDCYFDNVGGE-F  226 (333)
T ss_dssp             ESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS--CSCHHHHHHHHCTT-CEEEEEESSCHH-H
T ss_pred             ecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCcEEEecCC--HHHHHHHHHHHhCC-CCeEEEECCChH-H
Confidence            997 9999999999999999 9999999999999999999988887753  25677788877765 899999999986 6


Q ss_pred             HHHHHHHcccCCcEEEEEccCCCc-----cc-cchhHhhhhCCceEEeeeccCCC---CCCcHHHHHHHHHCCCCCCCcc
Q 024295          170 LSEALETTKVGKGKVIVIGVGVDA-----MV-PLNVIALACGGRTLKGTTFGGIK---TKSDLPTLLDKCKNKEFKLHQL  240 (269)
Q Consensus       170 ~~~~~~~l~~~~G~~v~~g~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~g~~~~~~~  240 (269)
                      +..++++++++ |+++.+|.....     .. ..+...++.+++++.|+....+.   ..+.++++++++.+|++++.. 
T Consensus       227 ~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~-  304 (333)
T 1v3u_A          227 LNTVLSQMKDF-GKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHE-  304 (333)
T ss_dssp             HHHHHTTEEEE-EEEEECCCCC-------CCBCCCHHHHHHTTCEEEECCGGGCCTHHHHHHHHHHHHHHHTTSSCCCE-
T ss_pred             HHHHHHHHhcC-CEEEEEeccccccCCCCCCCCcCHHHHhhcCceEEEEehhhcchHHHHHHHHHHHHHHHCCCccCcc-
Confidence            89999999996 999999976431     11 13555677899999998754431   124577899999999987764 


Q ss_pred             eeEEeehhhHHHHHHHhcCCCe-eeEEeeC
Q 024295          241 LTHHVKLEEIDKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       241 ~~~~~~~~~~~~a~~~~~~~~~-~k~vl~~  269 (269)
                       ..+++++++++||+.+.+++. +|+|+++
T Consensus       305 -~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  333 (333)
T 1v3u_A          305 -HVTKGFENMPAAFIEMLNGANLGKAVVTA  333 (333)
T ss_dssp             -EEEECGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred             -ccccCHHHHHHHHHHHHcCCCCceEEEeC
Confidence             345799999999999987765 7999875

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=1.6e-34  Score=248.50  Aligned_cols=243  Identities=16%  Similarity=0.126  Sum_probs=197.4

Q ss_pred             ccccCCc-eeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEE-
Q 024295           14 GLMLDST-SRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVL-   91 (269)
Q Consensus        14 ~~vg~~~-~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~-   91 (269)
                      -.+|+++ .++++ ||+|++.. +|+|+||++++++.++++|+++++++|+++++.++|||+++. ... +++++|||+ 
T Consensus       103 ~~vG~~v~~~~~v-GdrV~~~~-~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~-~~~-~~g~~vlV~g  178 (379)
T 3iup_A          103 VEAGSSPAAQALM-GKTVAAIG-GAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMVE-TMR-LEGHSALVHT  178 (379)
T ss_dssp             EEECSSHHHHTTT-TCEEEECC-SCCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHHH-HHH-HTTCSCEEES
T ss_pred             EEeCCCcccCCCC-CCEEEecC-CCcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHH-Hhc-cCCCEEEEEC
Confidence            3457887 78999 99999865 499999999999999999999999999999999999997654 444 899999999 


Q ss_pred             -cCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHH
Q 024295           92 -GLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLL  170 (269)
Q Consensus        92 -G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~  170 (269)
                       |+|++|++++|+|+..|+ +|+++++++++++.++++|+++++|+++   .++.+.+++.+++.++|++|||+|++...
T Consensus       179 ag~G~vG~~a~q~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~---~~~~~~v~~~t~~~g~d~v~d~~g~~~~~  254 (379)
T 3iup_A          179 AAASNLGQMLNQICLKDGI-KLVNIVRKQEQADLLKAQGAVHVCNAAS---PTFMQDLTEALVSTGATIAFDATGGGKLG  254 (379)
T ss_dssp             STTSHHHHHHHHHHHHHTC-CEEEEESSHHHHHHHHHTTCSCEEETTS---TTHHHHHHHHHHHHCCCEEEESCEEESHH
T ss_pred             CCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCcEEEeCCC---hHHHHHHHHHhcCCCceEEEECCCchhhH
Confidence             569999999999999999 8999999999999999999999999987   88999999998877999999999987677


Q ss_pred             HHHHHHcc-----cC----------CcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCC---C----CcHHHHHH
Q 024295          171 SEALETTK-----VG----------KGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKT---K----SDLPTLLD  228 (269)
Q Consensus       171 ~~~~~~l~-----~~----------~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~  228 (269)
                      ..++++++     ++          +|+++.+|....  .+++...++.+++++.|+++..+..   .    +.++.+++
T Consensus       255 ~~~~~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~~~~--~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  332 (379)
T 3iup_A          255 GQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDT--SPTEFNRNFGMAWGMGGWLLFPFLQKIGRERANALKQRVVA  332 (379)
T ss_dssp             HHHHHHHHHHHHTTCCSCCTTCCCSCEEEEECCCSEE--EEEEECCCSCSCEEEEECCHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHhcchhhhccccceeecccccCceEEEecCCCC--CccccccccccceEEEEEEeeeecccCCHHHHHHHHHHHHH
Confidence            88888885     32          156666655432  2233345556899999987654311   1    22455666


Q ss_pred             HHHCCCCCCCcceeEEeehhhH--HHHHHHhcCCCe-eeEEeeC
Q 024295          229 KCKNKEFKLHQLLTHHVKLEEI--DKAIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       229 l~~~g~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~-~k~vl~~  269 (269)
                      ++.+ +  +.+.++++||++++  ++||+.+.+++. +|+||++
T Consensus       333 ~~~~-~--l~~~i~~~~~l~~~~~~~A~~~l~~~~~~gKvVv~~  373 (379)
T 3iup_A          333 ELKT-T--FASHYSKEISLAEVLDLDMIAVYNKRATGEKYLINP  373 (379)
T ss_dssp             TTTT-T--TCCCCSEEEEHHHHTCHHHHHHHTTCCTTCCEEEET
T ss_pred             HHhc-c--CCCcceEEecHHHhhhHHHHHHHhcCCCCceEEEeC
Confidence            6666 3  55678899999999  999999988765 7999875

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.96  E-value=2e-29  Score=255.71  Aligned_cols=237  Identities=17%  Similarity=0.180  Sum_probs=198.0

Q ss_pred             eecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHH
Q 024295           24 SVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVD  102 (269)
Q Consensus        24 ~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~  102 (269)
                      .+ ||+|+++...|+|+||++++++.++++|+++++++||+++++++|||+++...+++++|++|||+|+ |++|++++|
T Consensus      1608 ~v-GdrV~g~~~~G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiq 1686 (2512)
T 2vz8_A         1608 AS-GRRVMGMVPAEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIA 1686 (2512)
T ss_dssp             TT-SCCEEEECSSCCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHH
T ss_pred             cc-CCEEEEeecCCceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHH
Confidence            35 9999998877999999999999999999999999999999999999999988899999999999985 999999999


Q ss_pred             HHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcc
Q 024295          103 GARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTK  178 (269)
Q Consensus       103 la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~  178 (269)
                      +||..|+ +|+++++++++.+.+++    +|+++++++++   .++.+.+++.+++.++|+|||++++ ..+..++++++
T Consensus      1687 lAk~~Ga-~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~---~~~~~~i~~~t~g~GvDvVld~~g~-~~l~~~l~~L~ 1761 (2512)
T 2vz8_A         1687 IALSRGC-RVFTTVGSAEKRAYLQARFPQLDETCFANSRD---TSFEQHVLRHTAGKGVDLVLNSLAE-EKLQASVRCLA 1761 (2512)
T ss_dssp             HHHHTTC-EEEEEESCHHHHHHHHHHCTTCCSTTEEESSS---SHHHHHHHHTTTSCCEEEEEECCCH-HHHHHHHTTEE
T ss_pred             HHHHcCC-EEEEEeCChhhhHHHHhhcCCCCceEEecCCC---HHHHHHHHHhcCCCCceEEEECCCc-hHHHHHHHhcC
Confidence            9999999 99999999999999886    68899999987   8899999999988899999999985 47899999999


Q ss_pred             cCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCC--CCCcHHHHHHHH----HCCCCCCCcceeEEeehhhHHH
Q 024295          179 VGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIK--TKSDLPTLLDKC----KNKEFKLHQLLTHHVKLEEIDK  252 (269)
Q Consensus       179 ~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~----~~g~~~~~~~~~~~~~~~~~~~  252 (269)
                      ++ |+++.+|.............++.+++++.++....+.  ..+.+.++++++    .+|++  .++++++||++++++
T Consensus      1762 ~~-Gr~V~iG~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~l~~l~~~~~~g~l--~p~i~~~f~l~ei~e 1838 (2512)
T 2vz8_A         1762 QH-GRFLEIGKFDLSNNHALGMAVFLKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGVV--QPLKCTVFPRTKVEA 1838 (2512)
T ss_dssp             EE-EEEEECCCHHHHTTCEEEGGGGGGCCEEEECCGGGTTSSCCHHHHHHHHHHHHHHTTTCS--CCCCEEEEESSTHHH
T ss_pred             CC-cEEEEeecccccccCcccccccccCCcEEEeeHHHHhhhCHHHHHHHHHHHHHHHHcCCc--CCCcceEecHHHHHH
Confidence            96 9999998643211111123345589999987654331  123455555554    46664  456889999999999


Q ss_pred             HHHHhcCCCe-eeEEeeC
Q 024295          253 AIQLLKQPDC-VKVLITI  269 (269)
Q Consensus       253 a~~~~~~~~~-~k~vl~~  269 (269)
                      ||+.+.+++. +|+|+++
T Consensus      1839 A~~~l~~g~~~GKvVi~~ 1856 (2512)
T 2vz8_A         1839 AFRYMAQGKHIGKVVIQV 1856 (2512)
T ss_dssp             HHHHHHTTCCSSEEEEEC
T ss_pred             HHHhhhccCccceEEEEC
Confidence            9999988776 5999864

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.92  E-value=5.1e-25  Score=172.74  Aligned_cols=184  Identities=17%  Similarity=0.276  Sum_probs=140.3

Q ss_pred             CceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 024295           48 NYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK  126 (269)
Q Consensus        48 ~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~  126 (269)
                      +.++++|+++++++|++++++++|||+++.+.++++++++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            4688999999999999999999999999888889999999999995 9999999999999999 9999999999998899


Q ss_pred             hCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHhhhhC
Q 024295          127 AFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIALACG  205 (269)
Q Consensus       127 ~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~  205 (269)
                      ++|++.+++..+   .++.+.+.+.+++.++|+++|++|.. .+..++++++++ |+++.+|.... ...+++.. .+.+
T Consensus        81 ~~g~~~~~d~~~---~~~~~~~~~~~~~~~~D~vi~~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~-~~~~  154 (198)
T 1pqw_A           81 RLGVEYVGDSRS---VDFADEILELTDGYGVDVVLNSLAGE-AIQRGVQILAPG-GRFIELGKKDVYADASLGLA-ALAK  154 (198)
T ss_dssp             TTCCSEEEETTC---STHHHHHHHHTTTCCEEEEEECCCTH-HHHHHHHTEEEE-EEEEECSCGGGTTTCEEEGG-GGTT
T ss_pred             HcCCCEEeeCCc---HHHHHHHHHHhCCCCCeEEEECCchH-HHHHHHHHhccC-CEEEEEcCCCCcCcCcCChh-HhcC
Confidence            999988888776   67888888877656899999999864 789999999996 99999997652 12223333 3358


Q ss_pred             CceEEeeec------cCCCCCCcHHHHHHHHHCCCCCCC
Q 024295          206 GRTLKGTTF------GGIKTKSDLPTLLDKCKNKEFKLH  238 (269)
Q Consensus       206 ~~~~~~~~~------~~~~~~~~~~~~~~l~~~g~~~~~  238 (269)
                      ++++.+...      ......+.++++++++.+|++++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~  193 (198)
T 1pqw_A          155 SASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVL  193 (198)
T ss_dssp             TCEEEECCHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred             CcEEEEEehHHhhccCHHHHHHHHHHHHHHHHcCCccCC
Confidence            888886532      110113568899999999998765

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.05  E-value=2.2e-11  Score=105.00  Aligned_cols=162  Identities=12%  Similarity=0.140  Sum_probs=116.0

Q ss_pred             cccCCceeeeecCeEEe------e---eeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhc---CC
Q 024295           15 LMLDSTSRMSVRGQKLY------H---IFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEA---KV   82 (269)
Q Consensus        15 ~vg~~~~~~~~~Gd~v~------~---~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~---~~   82 (269)
                      .+|+|..++.+ |+.++      +   ....|++++|+..+...++++|++++.+.++.. .++.+++.++....   .-
T Consensus        87 ~v~~Glds~~v-Ge~~Il~qvk~~~~~~~~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~~-~~~s~a~~av~~a~~~~~~  164 (404)
T 1gpj_A           87 RVASGLESMMV-GEQEILRQVKKAYDRAARLGTLDEALKIVFRRAINLGKRAREETRISE-GAVSIGSAAVELAERELGS  164 (404)
T ss_dssp             HHHTTTTSSST-TCHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSTTC-SCCSHHHHHHHHHHHHHSC
T ss_pred             eeccCCCCCcC-CcchhHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhccCcchhhhcC-CCccHHHHHHHHHHHHhcc
Confidence            45778877777 77651      1   122478899998888889999988887776653 47778888764322   12


Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchH-HHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKK-EKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~-~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      .++++|+|+|+|.+|.++++.++..|+++|+++++++++. +.++++|++ +++.     .++.+.+.      ++|+|+
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~-~~~~-----~~l~~~l~------~aDvVi  232 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE-AVRF-----DELVDHLA------RSDVVV  232 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE-ECCG-----GGHHHHHH------TCSEEE
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc-eecH-----HhHHHHhc------CCCEEE
Confidence            5799999999999999999999999988999999998886 667788876 3332     23433331      789999


Q ss_pred             EccCChhHHH--HHHHH--c--ccCCcEEEEEccCC
Q 024295          162 ECTGVPSLLS--EALET--T--KVGKGKVIVIGVGV  191 (269)
Q Consensus       162 d~~g~~~~~~--~~~~~--l--~~~~G~~v~~g~~~  191 (269)
                      ++++.+..+.  ..+..  +  +++ +.++.++...
T Consensus       233 ~at~~~~~~~~~~~l~~~~lk~r~~-~~~v~vdia~  267 (404)
T 1gpj_A          233 SATAAPHPVIHVDDVREALRKRDRR-SPILIIDIAN  267 (404)
T ss_dssp             ECCSSSSCCBCHHHHHHHHHHCSSC-CCEEEEECCS
T ss_pred             EccCCCCceecHHHHHHHHHhccCC-CCEEEEEccC
Confidence            9998654321  44554  3  554 7777777543

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.98  E-value=9.2e-10  Score=93.53  Aligned_cols=138  Identities=19%  Similarity=0.168  Sum_probs=97.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce--eeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD--FINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      +++|+|+|+|++|+++++.++.+|+ +|+++++++++.+.++++++..  +++...   .++.+.+.      ++|++++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~------~~DvVI~  236 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNS---AEIETAVA------EADLLIG  236 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCH---HHHHHHHH------TCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCceeEeeeCCH---HHHHHHHc------CCCEEEE
Confidence            4899999999999999999999999 9999999999999888766443  333332   34444332      7899999


Q ss_pred             ccCChhH------HHHHHHHcccCCcEEEEEccCCCc------cccchhHhhhhCCceEEeeecc-CCC--------CCC
Q 024295          163 CTGVPSL------LSEALETTKVGKGKVIVIGVGVDA------MVPLNVIALACGGRTLKGTTFG-GIK--------TKS  221 (269)
Q Consensus       163 ~~g~~~~------~~~~~~~l~~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~  221 (269)
                      |++.+..      ....++.++++ |+++.++...+.      +.+++...+..+++++.+...- ...        ...
T Consensus       237 ~~~~~~~~~~~li~~~~~~~~~~g-~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~  315 (361)
T 1pjc_A          237 AVLVPGRRAPILVPASLVEQMRTG-SVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNS  315 (361)
T ss_dssp             CCCCTTSSCCCCBCHHHHTTSCTT-CEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHH
T ss_pred             CCCcCCCCCCeecCHHHHhhCCCC-CEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHH
Confidence            9976532      56788999996 999999865431      3345544555678887764311 100        012


Q ss_pred             cHHHHHHHHHCC
Q 024295          222 DLPTLLDKCKNK  233 (269)
Q Consensus       222 ~~~~~~~l~~~g  233 (269)
                      .++.+++++.+|
T Consensus       316 ~~~~l~~l~~~G  327 (361)
T 1pjc_A          316 TLPYVVKLANQG  327 (361)
T ss_dssp             HHHHHHHHHHHG
T ss_pred             HHHHHHHHHhCC
Confidence            356677777776

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.87  E-value=1.2e-08  Score=87.38  Aligned_cols=145  Identities=20%  Similarity=0.222  Sum_probs=97.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCcee-eCCCC-------------CC---CccHHH
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF-INPDD-------------EP---NKSISE  146 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~-------------~~---~~~~~~  146 (269)
                      ++++|+|+|+|.+|++++++++.+|+ +|+++++++++.+.++++|++.+ ++..+             .+   .....+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            68999999999999999999999999 89999999999999988998754 23210             00   000122


Q ss_pred             HHHhhhCCCCccEEEEcc---CChh--H-HHHHHHHcccCCcEEEEEccCCCc--cccchhHhhhhCCceEEeeeccCCC
Q 024295          147 LVKGITHGMGVDYCFECT---GVPS--L-LSEALETTKVGKGKVIVIGVGVDA--MVPLNVIALACGGRTLKGTTFGGIK  218 (269)
Q Consensus       147 ~i~~~~~~~~~d~v~d~~---g~~~--~-~~~~~~~l~~~~G~~v~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  218 (269)
                      .+.+...  ++|+|++++   |.+.  . ....++.++++ +.++.++...+.  ....+...+..+++++.++..  + 
T Consensus       250 ~l~~~~~--~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g-~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~--~-  323 (384)
T 1l7d_A          250 AVLKELV--KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTN--V-  323 (384)
T ss_dssp             HHHHHHT--TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSS--G-
T ss_pred             HHHHHhC--CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-CEEEEEecCCCCCeecccCCcEEEECCEEEEEeCC--C-
Confidence            2444333  699999999   5322  2 36788999996 999999854321  122233344557888888642  2 


Q ss_pred             CCCcHHHHHHHHHCCCC
Q 024295          219 TKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       219 ~~~~~~~~~~l~~~g~~  235 (269)
                      +......+.+++.++.+
T Consensus       324 p~~~~~~a~~l~~~~~~  340 (384)
T 1l7d_A          324 PSRVAADASPLFAKNLL  340 (384)
T ss_dssp             GGGGHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHhHH
Confidence            12334557777766654

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.82  E-value=1.3e-08  Score=86.88  Aligned_cols=119  Identities=20%  Similarity=0.166  Sum_probs=85.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      ++++|+|+|+|.+|+++++.++..|+ +|+++++++++.+.+++ +|+....+...  ..++.+.+.      ++|+|++
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~~~~~~~~--~~~l~~~l~------~aDvVi~  237 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGRIHTRYSS--AYELEGAVK------RADLVIG  237 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSSEEEECC--HHHHHHHHH------HCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCeeEeccCC--HHHHHHHHc------CCCEEEE
Confidence            57999999999999999999999999 99999999999888876 77653222211  033333332      6899999


Q ss_pred             ccCChhH------HHHHHHHcccCCcEEEEEccCCC------ccccchhHhhhhCCceEEee
Q 024295          163 CTGVPSL------LSEALETTKVGKGKVIVIGVGVD------AMVPLNVIALACGGRTLKGT  212 (269)
Q Consensus       163 ~~g~~~~------~~~~~~~l~~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~  212 (269)
                      |++.+..      ....++.++++ |.++.++...+      .+.+++...+..+++.+.+.
T Consensus       238 ~~~~p~~~t~~li~~~~l~~mk~g-~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i~~~  298 (377)
T 2vhw_A          238 AVLVPGAKAPKLVSNSLVAHMKPG-AVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCV  298 (377)
T ss_dssp             CCCCTTSCCCCCBCHHHHTTSCTT-CEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEEECB
T ss_pred             CCCcCCCCCcceecHHHHhcCCCC-cEEEEEecCCCCccccccCCCCCCCEEEECCEEEEec
Confidence            9976543      57888999996 99999985432      13334444444567776543

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.78  E-value=2.8e-08  Score=84.67  Aligned_cols=141  Identities=22%  Similarity=0.195  Sum_probs=88.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      ++++|+|+|+|.+|+++++.++..|+ +|+++++++++.+.+++ +|.+...+..+  ..++.+.+.      ++|++++
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~~~~~~~~~--~~~l~~~~~------~~DvVi~  235 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGRVITLTAT--EANIKKSVQ------HADLLIG  235 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSEEEEECC--HHHHHHHHH------HCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCceEEEecCC--HHHHHHHHh------CCCEEEE
Confidence            46899999999999999999999999 99999999988888766 77653232221  133333332      6899999


Q ss_pred             ccCChhH------HHHHHHHcccCCcEEEEEccCCCc------cccchhHhhhhCCceEEeeeccC-CC--------CCC
Q 024295          163 CTGVPSL------LSEALETTKVGKGKVIVIGVGVDA------MVPLNVIALACGGRTLKGTTFGG-IK--------TKS  221 (269)
Q Consensus       163 ~~g~~~~------~~~~~~~l~~~~G~~v~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~  221 (269)
                      +++.+..      .+..++.++++ |.++.++...+.      +.+++...+..+++.+.+..... ..        ...
T Consensus       236 ~~g~~~~~~~~li~~~~l~~mk~g-g~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~  314 (369)
T 2eez_A          236 AVLVPGAKAPKLVTRDMLSLMKEG-AVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQ  314 (369)
T ss_dssp             CCC-------CCSCHHHHTTSCTT-CEEEECC-------------------CEETTEEEECCSCSGGGSHHHHHHHHHHH
T ss_pred             CCCCCccccchhHHHHHHHhhcCC-CEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHH
Confidence            9986531      57788999996 999999865431      23344444555777776643111 00        113


Q ss_pred             cHHHHHHHHHCCC
Q 024295          222 DLPTLLDKCKNKE  234 (269)
Q Consensus       222 ~~~~~~~l~~~g~  234 (269)
                      .++.+++++.++.
T Consensus       315 ~~~~l~~l~~~g~  327 (369)
T 2eez_A          315 TLPYVLKLAEKGL  327 (369)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCh
Confidence            3556677776663

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.74  E-value=5.8e-08  Score=83.41  Aligned_cols=126  Identities=21%  Similarity=0.282  Sum_probs=85.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee-CCCC--CC--------CccH----HHHH
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDD--EP--------NKSI----SELV  148 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~--~~--------~~~~----~~~i  148 (269)
                      ++.+|+|+|+|.+|++++++++.+|+ +|+++++++++.+.++++|++.+. +..+  ..        ..++    .+.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            57899999999999999999999999 999999999999989889987542 2100  00        0111    1123


Q ss_pred             HhhhCCCCccEEEEccCCh-----hH-HHHHHHHcccCCcEEEEEccCCCccccch--hH-hhhhCCceEEeee
Q 024295          149 KGITHGMGVDYCFECTGVP-----SL-LSEALETTKVGKGKVIVIGVGVDAMVPLN--VI-ALACGGRTLKGTT  213 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~g~~-----~~-~~~~~~~l~~~~G~~v~~g~~~~~~~~~~--~~-~~~~~~~~~~~~~  213 (269)
                      .+...  ++|+|+++++.+     .. ....++.++++ +.++.++...+...+..  .. .+..+++++.+..
T Consensus       250 ~e~~~--~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g-~vIVdva~~~Gg~v~~~~~~~p~~~~~gv~i~g~~  320 (401)
T 1x13_A          250 AAQAK--EVDIIVTTALIPGKPAPKLITREMVDSMKAG-SVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYT  320 (401)
T ss_dssp             HHHHH--HCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGTCSBTTCCTTSEEECTTSCEEECCS
T ss_pred             HHHhC--CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-cEEEEEcCCCCCCcCcccCCCceEEECCEEEEeeC
Confidence            33332  689999996322     22 26788999996 99999986532222222  11 1445788888764

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.65  E-value=1.5e-07  Score=82.42  Aligned_cols=118  Identities=18%  Similarity=0.256  Sum_probs=88.1

Q ss_pred             hhhHHHHHHhc-CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHH
Q 024295           70 TTGYGAAWKEA-KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELV  148 (269)
Q Consensus        70 ~~a~~~l~~~~-~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i  148 (269)
                      .++++++.+.. ...+|++|+|+|.|.+|..+++.++..|+ +|+++++++++.+.++++|++ +++        +.+.+
T Consensus       258 ~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~Ga~-~~~--------l~e~l  327 (494)
T 3ce6_A          258 HSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMMEGFD-VVT--------VEEAI  327 (494)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECC--------HHHHG
T ss_pred             hhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCE-Eec--------HHHHH
Confidence            34555543222 26789999999999999999999999999 999999999998888889986 321        22222


Q ss_pred             HhhhCCCCccEEEEccCChhHHH-HHHHHcccCCcEEEEEccCCCccccchhHhhhhCCc
Q 024295          149 KGITHGMGVDYCFECTGVPSLLS-EALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGR  207 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  207 (269)
                            .++|+|+++++.+..+. ..++.++++ |.++.+|...   .+++...+..+.+
T Consensus       328 ------~~aDvVi~atgt~~~i~~~~l~~mk~g-gilvnvG~~~---~eId~~aL~~~aL  377 (494)
T 3ce6_A          328 ------GDADIVVTATGNKDIIMLEHIKAMKDH-AILGNIGHFD---NEIDMAGLERSGA  377 (494)
T ss_dssp             ------GGCSEEEECSSSSCSBCHHHHHHSCTT-CEEEECSSSG---GGBCHHHHHHTTC
T ss_pred             ------hCCCEEEECCCCHHHHHHHHHHhcCCC-cEEEEeCCCC---CccCHHHHHHhhh
Confidence                  17899999998765555 788999996 9999998754   2355555554333

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.51  E-value=1.9e-07  Score=74.75  Aligned_cols=100  Identities=12%  Similarity=0.052  Sum_probs=74.0

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CC-c--eeeCCCCCCCccHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GM-T--DFINPDDEPNKSISELV  148 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~-~--~v~~~~~~~~~~~~~~i  148 (269)
                      +.....+.++++||.+|+| .|..+..+++. +. +|++++.+++..+.+++.    +. .  .++..      ++.   
T Consensus        83 ~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~------d~~---  150 (248)
T 2yvl_A           83 IALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNV------DFK---  150 (248)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECS------CTT---
T ss_pred             HHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEc------Chh---
Confidence            4466788899999999998 59999999998 66 999999999888887653    32 1  12211      111   


Q ss_pred             Hhhh-CCCCccEEEEccCCh-hHHHHHHHHcccCCcEEEEEcc
Q 024295          149 KGIT-HGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       149 ~~~~-~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                       +.. .+.++|+|+...+.+ ..+..+.+.++++ |+++....
T Consensus       151 -~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  191 (248)
T 2yvl_A          151 -DAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEG-APVGFLLP  191 (248)
T ss_dssp             -TSCCCTTCBSEEEECSSCGGGGHHHHHHHBCTT-CEEEEEES
T ss_pred             -hcccCCCcccEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence             111 234799999887765 6789999999996 99988754

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.40  E-value=1.2e-06  Score=74.68  Aligned_cols=126  Identities=24%  Similarity=0.296  Sum_probs=82.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCC---C--CCCccH------------HH
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPD---D--EPNKSI------------SE  146 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~---~--~~~~~~------------~~  146 (269)
                      ++.+|+|+|+|.+|+.++++++.+|+ +|++.++++++.+.++++|++.+....   +  .....+            .+
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            56899999999999999999999999 999999999999999999876332110   0  000001            11


Q ss_pred             HHHhhhCCCCccEEEEccCChh------HHHHHHHHcccCCcEEEEEccCCCccccc--hhHhhhhCCceEEeee
Q 024295          147 LVKGITHGMGVDYCFECTGVPS------LLSEALETTKVGKGKVIVIGVGVDAMVPL--NVIALACGGRTLKGTT  213 (269)
Q Consensus       147 ~i~~~~~~~~~d~v~d~~g~~~------~~~~~~~~l~~~~G~~v~~g~~~~~~~~~--~~~~~~~~~~~~~~~~  213 (269)
                      .+.+..  .+.|+||.++..+.      ..++.++.++++ +.++.++...+...+.  +...+..+++.+.+..
T Consensus       268 ~l~e~l--~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~G-sVIVDvA~d~GG~~e~t~~~~~~~~~GV~~~gv~  339 (405)
T 4dio_A          268 LVAEHI--AKQDIVITTALIPGRPAPRLVTREMLDSMKPG-SVVVDLAVERGGNIEGAEAGKVTEVGGVRIVGHL  339 (405)
T ss_dssp             HHHHHH--HTCSEEEECCCCSSSCCCCCBCHHHHTTSCTT-CEEEETTGGGTCSBTTCCTTEEEEETTEEEEECS
T ss_pred             HHHHHh--cCCCEEEECCcCCCCCCCEEecHHHHhcCCCC-CEEEEEeCCCCCCccccCCCCeEEECCEEEEEeC
Confidence            222222  27899999963221      247889999996 9999998543311111  1112334667776654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.36  E-value=1.1e-06  Score=74.32  Aligned_cols=105  Identities=24%  Similarity=0.275  Sum_probs=75.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCC-C---C-CCC----c----cHHHHHHh
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINP-D---D-EPN----K----SISELVKG  150 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~-~---~-~~~----~----~~~~~i~~  150 (269)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|++.++++++.+.++++|++.+-.. +   . .+.    +    .-.+.+.+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            57899999999999999999999999 99999999999999999987643210 0   0 000    0    01112233


Q ss_pred             hhCCCCccEEEEccCChh------HHHHHHHHcccCCcEEEEEccCCC
Q 024295          151 ITHGMGVDYCFECTGVPS------LLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       151 ~~~~~~~d~v~d~~g~~~------~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                      ..  .++|+||.++..+.      ...+.++.++++ +.++.++...+
T Consensus       262 ~l--~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpG-sVIVDvA~d~G  306 (381)
T 3p2y_A          262 AI--TKFDIVITTALVPGRPAPRLVTAAAATGMQPG-SVVVDLAGETG  306 (381)
T ss_dssp             HH--TTCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGT
T ss_pred             HH--hcCCEEEECCCCCCcccceeecHHHHhcCCCC-cEEEEEeCCCC
Confidence            22  27999999873221      247899999996 99999986554

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.32  E-value=5.9e-07  Score=73.41  Aligned_cols=102  Identities=13%  Similarity=0.164  Sum_probs=74.4

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHhhhC
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      ..++++++++||.+|+|+.++.++.+++..|+ +|++++.+++..+.+++.    |.+.+ ....   .+..    ++. 
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl~~v-~~v~---gDa~----~l~-  185 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGVDGV-NVIT---GDET----VID-  185 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTCCSE-EEEE---SCGG----GGG-
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCCCCe-EEEE---Cchh----hCC-
Confidence            35788999999999999878888888888898 999999999988888763    43211 1111   1211    122 


Q ss_pred             CCCccEEEEccCCh---hHHHHHHHHcccCCcEEEEEccC
Q 024295          154 GMGVDYCFECTGVP---SLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       154 ~~~~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      +..||+|+-+...+   ..++++.+.+++| |+++.....
T Consensus       186 d~~FDvV~~~a~~~d~~~~l~el~r~LkPG-G~Lvv~~~~  224 (298)
T 3fpf_A          186 GLEFDVLMVAALAEPKRRVFRNIHRYVDTE-TRIIYRTYT  224 (298)
T ss_dssp             GCCCSEEEECTTCSCHHHHHHHHHHHCCTT-CEEEEEECC
T ss_pred             CCCcCEEEECCCccCHHHHHHHHHHHcCCC-cEEEEEcCc
Confidence            23899999665433   4688999999997 999877543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.30  E-value=6.4e-07  Score=65.65  Aligned_cols=108  Identities=12%  Similarity=0.041  Sum_probs=74.8

Q ss_pred             chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHhCCCceeeCCCCCCCccHHH
Q 024295           68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEK-GKAFGMTDFINPDDEPNKSISE  146 (269)
Q Consensus        68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~  146 (269)
                      ++++++.++. ......+++|+|+|+|.+|.+.++.++..|+ +|++.++++++.+. +++++.... ..     .++.+
T Consensus         5 ~~sv~~~a~~-~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~~~~~-~~-----~~~~~   76 (144)
T 3oj0_A            5 KVSIPSIVYD-IVRKNGGNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYEYEYV-LI-----NDIDS   76 (144)
T ss_dssp             CCSHHHHHHH-HHHHHCCCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHTCEEE-EC-----SCHHH
T ss_pred             cccHHHHHHH-HHHhccCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhCCceE-ee-----cCHHH
Confidence            4556666653 3333358999999999999999998888899 59999999888765 556775422 22     23433


Q ss_pred             HHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          147 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       147 ~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      .+.      ++|+|+.+++.+.... ....++++ +.++.++.+.
T Consensus        77 ~~~------~~Divi~at~~~~~~~-~~~~l~~g-~~vid~~~p~  113 (144)
T 3oj0_A           77 LIK------NNDVIITATSSKTPIV-EERSLMPG-KLFIDLGNPP  113 (144)
T ss_dssp             HHH------TCSEEEECSCCSSCSB-CGGGCCTT-CEEEECCSSC
T ss_pred             Hhc------CCCEEEEeCCCCCcEe-eHHHcCCC-CEEEEccCCc
Confidence            332      6899999998653322 22667885 8888887654

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.26  E-value=7.9e-06  Score=60.50  Aligned_cols=91  Identities=18%  Similarity=0.156  Sum_probs=64.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      ..++.+|+|+|+|.+|..+++.++..|. +|+++++++++.+.++ +.|...+....    .+ .+.+.+. +-.++|+|
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~~~~~~d~----~~-~~~l~~~-~~~~ad~V   88 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSGFTVVGDA----AE-FETLKEC-GMEKADMV   88 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCSEEEESCT----TS-HHHHHTT-TGGGCSEE
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCCcEEEecC----CC-HHHHHHc-CcccCCEE
Confidence            3467899999999999999999999999 9999999999888877 66765433211    11 1233332 12379999


Q ss_pred             EEccCChhHHHHHHHHccc
Q 024295          161 FECTGVPSLLSEALETTKV  179 (269)
Q Consensus       161 ~d~~g~~~~~~~~~~~l~~  179 (269)
                      +.+++.+.....+...++.
T Consensus        89 i~~~~~~~~~~~~~~~~~~  107 (155)
T 2g1u_A           89 FAFTNDDSTNFFISMNARY  107 (155)
T ss_dssp             EECSSCHHHHHHHHHHHHH
T ss_pred             EEEeCCcHHHHHHHHHHHH
Confidence            9999987555555555443

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.19  E-value=2.1e-05  Score=54.98  Aligned_cols=94  Identities=12%  Similarity=0.061  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      .+.+|+|+|+|.+|...++.+...| . +|+++++++++.+.++..+...+. +..+   .   +.+.+...  ++|+|+
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~-~v~~~~r~~~~~~~~~~~~~~~~~~d~~~---~---~~~~~~~~--~~d~vi   74 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNY-SVTVADHDLAALAVLNRMGVATKQVDAKD---E---AGLAKALG--GFDAVI   74 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSE-EEEEEESCHHHHHHHHTTTCEEEECCTTC---H---HHHHHHTT--TCSEEE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHhCCCcEEEecCCC---H---HHHHHHHc--CCCEEE
Confidence            3468999999999999999999999 6 899999999888888766655432 3222   2   23333332  799999


Q ss_pred             EccCChhHHHHHHHHcccCCcEEEEE
Q 024295          162 ECTGVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      ++++..........+...+ -+++.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~g-~~~~~~   99 (118)
T 3ic5_A           75 SAAPFFLTPIIAKAAKAAG-AHYFDL   99 (118)
T ss_dssp             ECSCGGGHHHHHHHHHHTT-CEEECC
T ss_pred             ECCCchhhHHHHHHHHHhC-CCEEEe
Confidence            9998654433333344443 444443

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.11  E-value=2e-05  Score=67.39  Aligned_cols=93  Identities=24%  Similarity=0.342  Sum_probs=72.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      .-.|++|+|+|.|.+|..+++.++..|+ +|+++++++.+...+...|...         .++.+.+    .  ..|+++
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A~~~G~~v---------~~Leeal----~--~ADIVi  280 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQACMDGFRL---------VKLNEVI----R--QVDIVI  280 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE---------CCHHHHT----T--TCSEEE
T ss_pred             eecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHHHHcCCEe---------ccHHHHH----h--cCCEEE
Confidence            4579999999999999999999999999 9999999887766666666431         1222222    1  689999


Q ss_pred             EccCChhHHH-HHHHHcccCCcEEEEEccCC
Q 024295          162 ECTGVPSLLS-EALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       162 d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~  191 (269)
                      .|.+....+. +.+..++++ +.++.+|...
T Consensus       281 ~atgt~~lI~~e~l~~MK~g-ailINvgrg~  310 (435)
T 3gvp_A          281 TCTGNKNVVTREHLDRMKNS-CIVCNMGHSN  310 (435)
T ss_dssp             ECSSCSCSBCHHHHHHSCTT-EEEEECSSTT
T ss_pred             ECCCCcccCCHHHHHhcCCC-cEEEEecCCC
Confidence            9988655554 888999996 9999998664

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.00  E-value=4.1e-05  Score=62.88  Aligned_cols=94  Identities=22%  Similarity=0.251  Sum_probs=71.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      -++++|+|+|.|.+|.++++.++..|+ +|++.++++++.+.++++|+.. ++.     .++.+.+      ...|+|+.
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~~~-----~~l~~~l------~~aDvVi~  219 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGMEP-FHI-----SKAAQEL------RDVDVCIN  219 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTSEE-EEG-----GGHHHHT------TTCSEEEE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCCee-cCh-----hhHHHHh------cCCCEEEE
Confidence            368999999999999999999999999 9999999988777777787653 221     2232222      27899999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEccC
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      ++...-.-...+..++++ +.++.++..
T Consensus       220 ~~p~~~i~~~~l~~mk~~-~~lin~ar~  246 (293)
T 3d4o_A          220 TIPALVVTANVLAEMPSH-TFVIDLASK  246 (293)
T ss_dssp             CCSSCCBCHHHHHHSCTT-CEEEECSST
T ss_pred             CCChHHhCHHHHHhcCCC-CEEEEecCC
Confidence            986532234677889996 999998853

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.99  E-value=8.3e-05  Score=56.46  Aligned_cols=96  Identities=23%  Similarity=0.297  Sum_probs=67.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      +.+|+|+|.|.+|..+++.++.. |. +|+++++++++.+.+++.|...+. |..+   .   +.+.+.++-.++|+++.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~g~~~~~gd~~~---~---~~l~~~~~~~~ad~vi~  111 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSEGRNVISGDATD---P---DFWERILDTGHVKLVLL  111 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHTTCCEEECCTTC---H---HHHHTBCSCCCCCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHCCCCEEEcCCCC---H---HHHHhccCCCCCCEEEE
Confidence            56899999999999999999988 99 999999999999988888876544 3322   2   22333313347999999


Q ss_pred             ccCChhHHHHHHHHcccC--CcEEEEE
Q 024295          163 CTGVPSLLSEALETTKVG--KGKVIVI  187 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~--~G~~v~~  187 (269)
                      +++.......+...++..  ..+++..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          112 AMPHHQGNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             eCCChHHHHHHHHHHHHHCCCCEEEEE
Confidence            998765444444444331  1455543

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.95  E-value=6.1e-05  Score=61.24  Aligned_cols=104  Identities=21%  Similarity=0.249  Sum_probs=72.8

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCC-ceeeCCCCCCCccHHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGM-TDFINPDDEPNKSISELVK  149 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~-~~v~~~~~~~~~~~~~~i~  149 (269)
                      +.....+.++.+||.+|+|. |..+..+++..+ ..+|++++.+++..+.+++    .+. +.+ ....   .++.+   
T Consensus       104 i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v-~~~~---~d~~~---  175 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERV-TIKV---RDISE---  175 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGE-EEEC---CCGGG---
T ss_pred             HHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCE-EEEE---CCHHH---
Confidence            44566788999999999987 888999999864 3499999999988887765    343 111 1111   22211   


Q ss_pred             hhhCCCCccEEEEccCCh-hHHHHHHHHcccCCcEEEEEcc
Q 024295          150 GITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       150 ~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                       ..+...+|+|+-....+ ..+..+.+.++++ |.++.+..
T Consensus       176 -~~~~~~~D~V~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  214 (277)
T 1o54_A          176 -GFDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVCP  214 (277)
T ss_dssp             -CCSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEES
T ss_pred             -cccCCccCEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence             12223799998766544 5688999999996 99988754

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.90  E-value=0.00021  Score=51.71  Aligned_cols=94  Identities=10%  Similarity=0.082  Sum_probs=66.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      ..+|+|+|.|.+|...++.++..|. +|+++++++++.+.+++.|...+. |..+   .+   .+.+. +-.++|+++-+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~~i~gd~~~---~~---~l~~a-~i~~ad~vi~~   78 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVRAVLGNAAN---EE---IMQLA-HLECAKWLILT   78 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEESCTTS---HH---HHHHT-TGGGCSEEEEC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCCEEECCCCC---HH---HHHhc-CcccCCEEEEE
Confidence            4689999999999999999999999 999999999999999888876544 2222   22   23222 22378999999


Q ss_pred             cCChhHHH---HHHHHcccCCcEEEEE
Q 024295          164 TGVPSLLS---EALETTKVGKGKVIVI  187 (269)
Q Consensus       164 ~g~~~~~~---~~~~~l~~~~G~~v~~  187 (269)
                      ++......   ...+.+.++ .+++.-
T Consensus        79 ~~~~~~n~~~~~~a~~~~~~-~~iiar  104 (140)
T 3fwz_A           79 IPNGYEAGEIVASARAKNPD-IEIIAR  104 (140)
T ss_dssp             CSCHHHHHHHHHHHHHHCSS-SEEEEE
T ss_pred             CCChHHHHHHHHHHHHHCCC-CeEEEE
Confidence            98754322   334455564 565543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.87  E-value=8.2e-05  Score=61.30  Aligned_cols=95  Identities=19%  Similarity=0.234  Sum_probs=71.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      -++++|+|+|.|.+|..+++.++..|+ +|++.++++++.+.++++|.. .++.     .++.+    ..  ...|+|+.
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~-~~~~-----~~l~~----~l--~~aDvVi~  221 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLV-PFHT-----DELKE----HV--KDIDICIN  221 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCE-EEEG-----GGHHH----HS--TTCSEEEE
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCe-EEch-----hhHHH----Hh--hCCCEEEE
Confidence            368999999999999999999999999 999999998877777777754 2221     22222    22  27899999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      +++..-.-...+..++++ +.++.++..+
T Consensus       222 ~~p~~~i~~~~~~~mk~g-~~lin~a~g~  249 (300)
T 2rir_A          222 TIPSMILNQTVLSSMTPK-TLILDLASRP  249 (300)
T ss_dssp             CCSSCCBCHHHHTTSCTT-CEEEECSSTT
T ss_pred             CCChhhhCHHHHHhCCCC-CEEEEEeCCC
Confidence            997532234567888996 9999988643

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.87  E-value=8.4e-05  Score=63.72  Aligned_cols=93  Identities=19%  Similarity=0.219  Sum_probs=71.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      .-.|++|+|+|.|.+|..+++.++..|+ +|+++++++.+...+...|... .        ++.+.+.      ..|+++
T Consensus       244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~~~G~~v-v--------~LeElL~------~ADIVv  307 (464)
T 3n58_A          244 MMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAAMDGFEV-V--------TLDDAAS------TADIVV  307 (464)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCEE-C--------CHHHHGG------GCSEEE
T ss_pred             cccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHHhcCcee-c--------cHHHHHh------hCCEEE
Confidence            4579999999999999999999999999 9999998876655555566532 1        1222221      689999


Q ss_pred             EccCChhHH-HHHHHHcccCCcEEEEEccCC
Q 024295          162 ECTGVPSLL-SEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       162 d~~g~~~~~-~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      .+++....+ .+.+..++++ +.++.+|...
T Consensus       308 ~atgt~~lI~~e~l~~MK~G-AILINvGRgd  337 (464)
T 3n58_A          308 TTTGNKDVITIDHMRKMKDM-CIVGNIGHFD  337 (464)
T ss_dssp             ECCSSSSSBCHHHHHHSCTT-EEEEECSSST
T ss_pred             ECCCCccccCHHHHhcCCCC-eEEEEcCCCC
Confidence            998865443 5888999996 9999988654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.80  E-value=3.8e-05  Score=62.10  Aligned_cols=94  Identities=18%  Similarity=0.162  Sum_probs=68.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCCCc-eeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFGMT-DFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      .++.+||.+|+|. |..+..+++.. +. +|++++.+++..+.+++.+.. .++..+.   .++     ...+ ..||+|
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~---~~~-----~~~~-~~fD~v  152 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASS---HRL-----PFSD-TSMDAI  152 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCT---TSC-----SBCT-TCEEEE
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhCCCcEEEEcch---hhC-----CCCC-CceeEE
Confidence            5788999999988 99999999986 66 999999999999988875532 2222211   111     1112 379999


Q ss_pred             EEccCChhHHHHHHHHcccCCcEEEEEcc
Q 024295          161 FECTGVPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       161 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      +.. ..+..+..+.+.+++| |+++....
T Consensus       153 ~~~-~~~~~l~~~~~~L~pg-G~l~~~~~  179 (269)
T 1p91_A          153 IRI-YAPCKAEELARVVKPG-GWVITATP  179 (269)
T ss_dssp             EEE-SCCCCHHHHHHHEEEE-EEEEEEEE
T ss_pred             EEe-CChhhHHHHHHhcCCC-cEEEEEEc
Confidence            954 3445789999999996 99887753

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.76  E-value=0.00042  Score=53.61  Aligned_cols=102  Identities=16%  Similarity=0.175  Sum_probs=71.5

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSISELV  148 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i  148 (269)
                      +.....+.++++||.+|+|. |..++.+++. +. +|++++.+++..+.+++    .|..   .++..+      ..+.+
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d------~~~~~  117 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGT------APAAL  117 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC------TTGGG
T ss_pred             HHHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCc------hhhhc
Confidence            34566788999999999987 8888999988 77 99999999988887755    3433   222221      11111


Q ss_pred             HhhhCCCCccEEEEccCChh-HHHHHHHHcccCCcEEEEEccC
Q 024295          149 KGITHGMGVDYCFECTGVPS-LLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~g~~~-~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                         .....+|+|+...+... .+..+.+.++++ |+++.....
T Consensus       118 ---~~~~~~D~v~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~~  156 (204)
T 3njr_A          118 ---ADLPLPEAVFIGGGGSQALYDRLWEWLAPG-TRIVANAVT  156 (204)
T ss_dssp             ---TTSCCCSEEEECSCCCHHHHHHHHHHSCTT-CEEEEEECS
T ss_pred             ---ccCCCCCEEEECCcccHHHHHHHHHhcCCC-cEEEEEecC
Confidence               11237999986544322 688999999996 999886543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.75  E-value=0.00033  Score=50.61  Aligned_cols=76  Identities=24%  Similarity=0.313  Sum_probs=57.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      ..+++|+|+|.+|...++.+...|. +|+++++++++.+.+++.+...+. |..+   .+   .+.+. +-.++|+++.+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~~~~gd~~~---~~---~l~~~-~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFDAVIADPTD---ES---FYRSL-DLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEECCTTC---HH---HHHHS-CCTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCcEEECCCCC---HH---HHHhC-CcccCCEEEEe
Confidence            4679999999999999999999999 999999999999888887765433 2222   22   23333 22379999999


Q ss_pred             cCChh
Q 024295          164 TGVPS  168 (269)
Q Consensus       164 ~g~~~  168 (269)
                      ++...
T Consensus        78 ~~~~~   82 (141)
T 3llv_A           78 GSDDE   82 (141)
T ss_dssp             CSCHH
T ss_pred             cCCHH
Confidence            98653

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.74  E-value=0.00014  Score=62.35  Aligned_cols=110  Identities=19%  Similarity=0.261  Sum_probs=78.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      .-.|++|.|+|.|.+|...++.++..|+ +|+++++++.+...+...|...         .++.+.+.      ..|+++
T Consensus       208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~~G~~~---------~sL~eal~------~ADVVi  271 (436)
T 3h9u_A          208 MIAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAMEGYQV---------LLVEDVVE------EAHIFV  271 (436)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE---------CCHHHHTT------TCSEEE
T ss_pred             cccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHHhCCee---------cCHHHHHh------hCCEEE
Confidence            3468999999999999999999999999 9999999887776676666542         12322221      689999


Q ss_pred             EccCChhHHH-HHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEe
Q 024295          162 ECTGVPSLLS-EALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKG  211 (269)
Q Consensus       162 d~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  211 (269)
                      .+.+....+. +.+..++++ ..++.++..   ..+++...+..+..+..+
T Consensus       272 lt~gt~~iI~~e~l~~MK~g-AIVINvgRg---~vEID~~~L~~~~~~~~~  318 (436)
T 3h9u_A          272 TTTGNDDIITSEHFPRMRDD-AIVCNIGHF---DTEIQVAWLKANAKERVE  318 (436)
T ss_dssp             ECSSCSCSBCTTTGGGCCTT-EEEEECSSS---GGGBCHHHHHHHCSEEEE
T ss_pred             ECCCCcCccCHHHHhhcCCC-cEEEEeCCC---CCccCHHHHHhhcCceEe
Confidence            8887543333 677888996 888888753   334555555544444433

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.74  E-value=8e-05  Score=64.79  Aligned_cols=91  Identities=21%  Similarity=0.298  Sum_probs=70.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      -.|++++|+|+|++|.+.++.++..|+ +|+++++++++...+...|.+ +.+..            +.  -..+|++++
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~d-v~~le------------e~--~~~aDvVi~  326 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGLQ-VLTLE------------DV--VSEADIFVT  326 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECCGG------------GT--TTTCSEEEE
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCCc-cCCHH------------HH--HHhcCEEEe
Confidence            478999999999999999999999999 999999998887777776653 22111            11  127899999


Q ss_pred             ccCChhHH-HHHHHHcccCCcEEEEEccC
Q 024295          163 CTGVPSLL-SEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       163 ~~g~~~~~-~~~~~~l~~~~G~~v~~g~~  190 (269)
                      +.|....+ ...+..++++ +.++..|..
T Consensus       327 atG~~~vl~~e~l~~mk~g-aiVvNaG~~  354 (488)
T 3ond_A          327 TTGNKDIIMLDHMKKMKNN-AIVCNIGHF  354 (488)
T ss_dssp             CSSCSCSBCHHHHTTSCTT-EEEEESSST
T ss_pred             CCCChhhhhHHHHHhcCCC-eEEEEcCCC
Confidence            99865544 3478889996 989888865

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.71  E-value=6.2e-05  Score=60.21  Aligned_cols=104  Identities=13%  Similarity=0.181  Sum_probs=70.6

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhCC
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      ....++.+||-+|+|. |..+..+++.++ ..+|++++.+++..+.+++    .|...-+....   .+..+.+....+.
T Consensus        59 ~~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~---~d~~~~l~~~~~~  134 (248)
T 3tfw_A           59 VRLTQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLRE---GPALQSLESLGEC  134 (248)
T ss_dssp             HHHHTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHTCCSC
T ss_pred             HhhcCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHhcCCC
Confidence            3455789999999986 888999999874 3499999999988887765    34331111112   4454445444333


Q ss_pred             CCccEEEEccCC---hhHHHHHHHHcccCCcEEEEEc
Q 024295          155 MGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       155 ~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ..||+|+-....   +..+..+.+.+++| |.++.-.
T Consensus       135 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~~~  170 (248)
T 3tfw_A          135 PAFDLIFIDADKPNNPHYLRWALRYSRPG-TLIIGDN  170 (248)
T ss_dssp             CCCSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEEC
T ss_pred             CCeEEEEECCchHHHHHHHHHHHHhcCCC-eEEEEeC
Confidence            489999833222   34678889999997 9887754

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.70  E-value=0.0002  Score=51.71  Aligned_cols=76  Identities=18%  Similarity=0.271  Sum_probs=54.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      .++|+|+|+|.+|...++.++..|. +|+++++++++.+.+++.+...+....    .+ .+.+.+. +-.++|+++.++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~~d~----~~-~~~l~~~-~~~~~d~vi~~~   78 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVIANA----TE-ENELLSL-GIRNFEYVIVAI   78 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTTCSEEEECCT----TC-HHHHHTT-TGGGCSEEEECC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCEEEEeCC----CC-HHHHHhc-CCCCCCEEEECC
Confidence            4679999999999999999999998 899999988887777666654332111    12 2233332 112799999999


Q ss_pred             CCh
Q 024295          165 GVP  167 (269)
Q Consensus       165 g~~  167 (269)
                      +.+
T Consensus        79 ~~~   81 (144)
T 2hmt_A           79 GAN   81 (144)
T ss_dssp             CSC
T ss_pred             CCc
Confidence            864

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.69  E-value=9.9e-05  Score=56.48  Aligned_cols=100  Identities=19%  Similarity=0.217  Sum_probs=65.4

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCC---------CeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHh
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGA---------AKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKG  150 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~---------~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~  150 (269)
                      .++++.+||.+|+|+ |..+..+++..+.         .+|+++|.++...     ......+ ..+- ......+.+.+
T Consensus        19 ~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----~~~~~~~~~~d~-~~~~~~~~~~~   91 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----LEGATFLCPADV-TDPRTSQRILE   91 (196)
T ss_dssp             CCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----CTTCEEECSCCT-TSHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhccc-----CCCCeEEEeccC-CCHHHHHHHHH
Confidence            367899999999998 9999999999874         4899999887431     1111222 1111 11333444444


Q ss_pred             hhCCCCccEEEE-----ccCCh------------hHHHHHHHHcccCCcEEEEEc
Q 024295          151 ITHGMGVDYCFE-----CTGVP------------SLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       151 ~~~~~~~d~v~d-----~~g~~------------~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ..++..||+|+-     +++..            ..+..+.+.|++| |+++...
T Consensus        92 ~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~  145 (196)
T 2nyu_A           92 VLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG-GTFLCKT  145 (196)
T ss_dssp             HSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             hcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC-CEEEEEe
Confidence            444447999983     33321            3577788999996 9998764

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.65  E-value=7.4e-05  Score=57.71  Aligned_cols=104  Identities=12%  Similarity=0.170  Sum_probs=72.3

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVK  149 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~  149 (269)
                      +.....++++.+||.+|+|. |..+..+++.....+|++++.+++..+.+++    .+.+  .++..+      ..+.+ 
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d------~~~~~-  103 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAF------APEGL-  103 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECC------TTTTC-
T ss_pred             HHHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCC------hhhhh-
Confidence            34566888999999999986 8899999998644499999999988887765    2322  222211      11111 


Q ss_pred             hhhCCCCccEEEEccC---ChhHHHHHHHHcccCCcEEEEEccC
Q 024295          150 GITHGMGVDYCFECTG---VPSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       150 ~~~~~~~~d~v~d~~g---~~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                        .....+|+|+....   ....+..+.+.++++ |+++.....
T Consensus       104 --~~~~~~D~i~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  144 (204)
T 3e05_A          104 --DDLPDPDRVFIGGSGGMLEEIIDAVDRRLKSE-GVIVLNAVT  144 (204)
T ss_dssp             --TTSCCCSEEEESCCTTCHHHHHHHHHHHCCTT-CEEEEEECB
T ss_pred             --hcCCCCCEEEECCCCcCHHHHHHHHHHhcCCC-eEEEEEecc
Confidence              11137999987654   234678899999997 999887543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.64  E-value=0.0002  Score=56.46  Aligned_cols=101  Identities=19%  Similarity=0.227  Sum_probs=69.2

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhC----CC-ceeeCCCCCCCccHHHHHHhh
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAA-KIIGIDKNPWKKEKGKAF----GM-TDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~-~v~~~~~~~~~~~~~~~~----g~-~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      ....++||++||-+|+|+ |..+..+++..|.+ +|++++.+++..+.+++.    +. ..+.....    +. +.... 
T Consensus        71 ~~l~ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~----~p-~~~~~-  143 (233)
T 4df3_A           71 IELPVKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDAR----FP-EKYRH-  143 (233)
T ss_dssp             SCCCCCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTT----CG-GGGTT-
T ss_pred             hhcCCCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEecc----Cc-ccccc-
Confidence            346789999999999987 99999999998864 899999999888777652    22 22322211    11 01111 


Q ss_pred             hCCCCccEEEEccCChh----HHHHHHHHcccCCcEEEEE
Q 024295          152 THGMGVDYCFECTGVPS----LLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~~~----~~~~~~~~l~~~~G~~v~~  187 (269)
                       ....+|+||-.+..+.    .+..+.+.|++| |+++..
T Consensus       144 -~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpG-G~lvI~  181 (233)
T 4df3_A          144 -LVEGVDGLYADVAQPEQAAIVVRNARFFLRDG-GYMLMA  181 (233)
T ss_dssp             -TCCCEEEEEECCCCTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             -ccceEEEEEEeccCChhHHHHHHHHHHhccCC-CEEEEE
Confidence             1237898886554432    466778899996 998775

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.62  E-value=0.00012  Score=58.01  Aligned_cols=105  Identities=19%  Similarity=0.143  Sum_probs=70.2

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhC
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .....++.+||.+|+|. |..+..+++..+ ..+|++++.+++..+.+++    .|...-+....   .+..+.+.+...
T Consensus        55 l~~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~---~d~~~~~~~~~~  130 (239)
T 2hnk_A           55 LTKISGAKRIIEIGTFT-GYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKL---GSALETLQVLID  130 (239)
T ss_dssp             HHHHHTCSEEEEECCTT-CHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHH
T ss_pred             HHHhhCcCEEEEEeCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEE---CCHHHHHHHHHh
Confidence            34456788999999985 999999999874 2399999999988877765    34322111111   333333333211


Q ss_pred             -------------C-CCccEEEEccCCh---hHHHHHHHHcccCCcEEEEEc
Q 024295          154 -------------G-MGVDYCFECTGVP---SLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       154 -------------~-~~~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g  188 (269)
                                   + ..||+|+...+.+   ..+..+.+.+++| |.++...
T Consensus       131 ~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~  181 (239)
T 2hnk_A          131 SKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPG-GLLIADN  181 (239)
T ss_dssp             CSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             hcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCC-eEEEEEc
Confidence                         1 3799998765543   3568888999996 9988753

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.61  E-value=2.2e-05  Score=60.93  Aligned_cols=100  Identities=10%  Similarity=0.071  Sum_probs=68.7

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVK  149 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~  149 (269)
                      +.....++++.+||.+|+|. |..+..+++. +. +|++++.+++..+.+++    .+..  .++..      +..+.  
T Consensus        69 ~~~~l~~~~~~~vLdiG~G~-G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~------d~~~~--  137 (210)
T 3lbf_A           69 MTELLELTPQSRVLEIGTGS-GYQTAILAHL-VQ-HVCSVERIKGLQWQARRRLKNLDLHNVSTRHG------DGWQG--  137 (210)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEES------CGGGC--
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCceEEEEC------CcccC--
Confidence            34567788999999999985 8888888888 66 99999999988887765    3422  22211      11111  


Q ss_pred             hhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEc
Q 024295          150 GITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       150 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                       ......||+|+...........+.+.+++| |+++..-
T Consensus       138 -~~~~~~~D~i~~~~~~~~~~~~~~~~L~pg-G~lv~~~  174 (210)
T 3lbf_A          138 -WQARAPFDAIIVTAAPPEIPTALMTQLDEG-GILVLPV  174 (210)
T ss_dssp             -CGGGCCEEEEEESSBCSSCCTHHHHTEEEE-EEEEEEE
T ss_pred             -CccCCCccEEEEccchhhhhHHHHHhcccC-cEEEEEE
Confidence             111238999997654433445788999996 9887753

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.60  E-value=0.00066  Score=54.11  Aligned_cols=77  Identities=14%  Similarity=0.031  Sum_probs=53.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce-e--eCCCCCCCccHHHHHH---hhhCCCCc
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD-F--INPDDEPNKSISELVK---GITHGMGV  157 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~-v--~~~~~~~~~~~~~~i~---~~~~~~~~  157 (269)
                      +++|||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+.+... .  .|-.+  +++..+.+.   +.. + ++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~v~~~~~~~-g-~i   76 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKERPNLFYFHGDVAD--PLTLKKFVEYAMEKL-Q-RI   76 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCTTS--HHHHHHHHHHHHHHH-S-CC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCEEEEEecCCC--HHHHHHHHHHHHHHc-C-CC
Confidence            478999986 8999999999999999 9999999988877766544322 1  23222  122222222   222 3 79


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus        77 DiLVNNAG~   85 (247)
T 3ged_A           77 DVLVNNACR   85 (247)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998864

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.58  E-value=9.1e-05  Score=58.62  Aligned_cols=103  Identities=22%  Similarity=0.270  Sum_probs=70.0

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhh
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      +.....++++.+||.+|+| .|..+..+++..+ .+|++++.+++..+.+++    .|...+ ....   .+..   ..+
T Consensus        83 ~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~---~d~~---~~~  153 (235)
T 1jg1_A           83 MLEIANLKPGMNILEVGTG-SGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNV-HVIL---GDGS---KGF  153 (235)
T ss_dssp             HHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSE-EEEE---SCGG---GCC
T ss_pred             HHHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEE---CCcc---cCC
Confidence            3455678899999999998 5999999999887 499999999888777765    343221 1111   1211   112


Q ss_pred             hCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEc
Q 024295          152 THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ..+.+||+|+...........+.+.+++| |+++..-
T Consensus       154 ~~~~~fD~Ii~~~~~~~~~~~~~~~L~pg-G~lvi~~  189 (235)
T 1jg1_A          154 PPKAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIPV  189 (235)
T ss_dssp             GGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred             CCCCCccEEEECCcHHHHHHHHHHhcCCC-cEEEEEE
Confidence            22225999997665444456888999996 9886653

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.58  E-value=8e-05  Score=58.85  Aligned_cols=102  Identities=15%  Similarity=0.199  Sum_probs=68.3

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCc---eeeCCCCCCCccHHHHHHhh
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMT---DFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~~~i~~~  151 (269)
                      .....++.+||.+|+| .|..+..+++.....+|++++.+++..+.+++.    |..   .++.      .+..+.+...
T Consensus        49 ~~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~------~d~~~~~~~~  121 (233)
T 2gpy_A           49 LLKMAAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLF------GDALQLGEKL  121 (233)
T ss_dssp             HHHHHCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEEC------SCGGGSHHHH
T ss_pred             HHhccCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE------CCHHHHHHhc
Confidence            3345578899999998 588999999987433999999999888877652    432   2222      2222222222


Q ss_pred             hCCCCccEEEEccCC---hhHHHHHHHHcccCCcEEEEEc
Q 024295          152 THGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .....||+|+-....   ...+..+.+.+++| |.++...
T Consensus       122 ~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~  160 (233)
T 2gpy_A          122 ELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPG-GLILSDN  160 (233)
T ss_dssp             TTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEE-EEEEEET
T ss_pred             ccCCCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEEc
Confidence            212379999865542   34578888999996 9988753

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.58  E-value=0.00071  Score=53.03  Aligned_cols=101  Identities=12%  Similarity=0.133  Sum_probs=67.6

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----CCCc-eeeCCCCCCCccHHHHHHhhh
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMH--GAAKIIGIDKNPWKKEKGKA----FGMT-DFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~--g~~~v~~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      .+.+++.+||-+|+|. |..+..+++.+  +. +|++++.+++..+.+++    .|.. .-+....   .+..+.+..+.
T Consensus        52 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~---gda~~~l~~~~  126 (221)
T 3dr5_A           52 TNGNGSTGAIAITPAA-GLVGLYILNGLADNT-TLTCIDPESEHQRQAKALFREAGYSPSRVRFLL---SRPLDVMSRLA  126 (221)
T ss_dssp             SCCTTCCEEEEESTTH-HHHHHHHHHHSCTTS-EEEEECSCHHHHHHHHHHHHHTTCCGGGEEEEC---SCHHHHGGGSC
T ss_pred             hCCCCCCCEEEEcCCc-hHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEE---cCHHHHHHHhc
Confidence            3444556999999986 99999999986  45 99999999988877755    3432 1122222   44444443332


Q ss_pred             CCCCccEEEEccCC---hhHHHHHHHHcccCCcEEEEE
Q 024295          153 HGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       153 ~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      ++ .||+||-....   ...++.+.+.+++| |.++.-
T Consensus       127 ~~-~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~d  162 (221)
T 3dr5_A          127 ND-SYQLVFGQVSPMDLKALVDAAWPLLRRG-GALVLA  162 (221)
T ss_dssp             TT-CEEEEEECCCTTTHHHHHHHHHHHEEEE-EEEEET
T ss_pred             CC-CcCeEEEcCcHHHHHHHHHHHHHHcCCC-cEEEEe
Confidence            33 89999754332   23578889999996 988764

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.54  E-value=0.00037  Score=56.42  Aligned_cols=104  Identities=17%  Similarity=0.243  Sum_probs=70.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCce---eeCCCCCCCccHHHHHHhhh--CCCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTD---FINPDDEPNKSISELVKGIT--HGMG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---v~~~~~~~~~~~~~~i~~~~--~~~~  156 (269)
                      +|+.+||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ +++|...   ..|-.+  .++..+.+.+..  -+ +
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~G-~  103 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGGGAVGIQADSAN--LAELDRLYEKVKAEAG-R  103 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTCEEEECCTTC--HHHHHHHHHHHHHHHS-C
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeEEEEecCCC--HHHHHHHHHHHHHHcC-C
Confidence            6899999986 8999999999999999 999999998887764 5566432   223322  122222222221  13 7


Q ss_pred             ccEEEEccCChh-------------------------HHHHHHHHcccCCcEEEEEccCCC
Q 024295          157 VDYCFECTGVPS-------------------------LLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       157 ~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                      +|++++++|...                         ..+.++..++.+ |++|.++...+
T Consensus       104 iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~-G~IInisS~~~  163 (273)
T 4fgs_A          104 IDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARG-SSVVLTGSTAG  163 (273)
T ss_dssp             EEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE-EEEEEECCGGG
T ss_pred             CCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CeEEEEeehhh
Confidence            999999987511                         234555677775 99999876543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=97.50  E-value=0.00023  Score=53.37  Aligned_cols=104  Identities=15%  Similarity=0.229  Sum_probs=71.3

Q ss_pred             HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-ee-eCCCCCCCccHHHHHHh
Q 024295           77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DF-INPDDEPNKSISELVKG  150 (269)
Q Consensus        77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v-~~~~~~~~~~~~~~i~~  150 (269)
                      .....++++.+||.+|+|. |..+..+++..+..+|++++.+++..+.+++    .+.. .+ +..+      ..+.+..
T Consensus        18 ~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d------~~~~~~~   90 (178)
T 3hm2_A           18 ISALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQG------APRAFDD   90 (178)
T ss_dssp             HHHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECC------TTGGGGG
T ss_pred             HHHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecc------hHhhhhc
Confidence            3455778899999999986 9999999998744499999999988887764    3433 22 2211      1111111


Q ss_pred             hhCCCCccEEEEccCC--hhHHHHHHHHcccCCcEEEEEccC
Q 024295          151 ITHGMGVDYCFECTGV--PSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       151 ~~~~~~~d~v~d~~g~--~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                        ....||+|+-....  ...+..+.+.++++ |+++.....
T Consensus        91 --~~~~~D~i~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~  129 (178)
T 3hm2_A           91 --VPDNPDVIFIGGGLTAPGVFAAAWKRLPVG-GRLVANAVT  129 (178)
T ss_dssp             --CCSCCSEEEECC-TTCTTHHHHHHHTCCTT-CEEEEEECS
T ss_pred             --cCCCCCEEEECCcccHHHHHHHHHHhcCCC-CEEEEEeec
Confidence              11389999865432  34789999999996 999876543

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.49  E-value=0.00045  Score=55.20  Aligned_cols=105  Identities=17%  Similarity=0.136  Sum_probs=73.5

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHh
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKG  150 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~  150 (269)
                      +.....++++.+||.+|+|+ |..+..+++..+ ..+|++++.+++..+.+++.    |....++...   .++.    +
T Consensus        85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~----~  156 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKL---KDIY----E  156 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEEC---SCGG----G
T ss_pred             HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEE---Cchh----h
Confidence            45667888999999999987 889999999853 34999999999888877653    4321011111   2221    2


Q ss_pred             hhCCCCccEEEEccCCh-hHHHHHHHHcccCCcEEEEEcc
Q 024295          151 ITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       151 ~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      ......+|+|+-....+ ..+..+.+.++++ |+++.+..
T Consensus       157 ~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  195 (255)
T 3mb5_A          157 GIEEENVDHVILDLPQPERVVEHAAKALKPG-GFFVAYTP  195 (255)
T ss_dssp             CCCCCSEEEEEECSSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred             ccCCCCcCEEEECCCCHHHHHHHHHHHcCCC-CEEEEEEC
Confidence            22333799998766544 3689999999996 99988753

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.49  E-value=0.00044  Score=55.22  Aligned_cols=103  Identities=16%  Similarity=0.062  Sum_probs=72.8

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhC-----CCce--eeCCCCCCCccHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKAF-----GMTD--FINPDDEPNKSISEL  147 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~~-----g~~~--v~~~~~~~~~~~~~~  147 (269)
                      +.....++++++||.+|+|. |..+..+++..+ ..+|++++.+++..+.+++.     |.+.  ++.      .++.+.
T Consensus        88 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~------~d~~~~  160 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHL------GKLEEA  160 (258)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEE------SCGGGC
T ss_pred             HHHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEE------Cchhhc
Confidence            44566788999999999986 999999999864 23999999999888887653     5221  221      111110


Q ss_pred             HHhhhCCCCccEEEEccCCh-hHHHHHHHHcccCCcEEEEEcc
Q 024295          148 VKGITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       148 i~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                        . .+...+|+|+-....+ ..+..+.+.++++ |+++.+..
T Consensus       161 --~-~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  199 (258)
T 2pwy_A          161 --E-LEEAAYDGVALDLMEPWKVLEKAALALKPD-RFLVAYLP  199 (258)
T ss_dssp             --C-CCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred             --C-CCCCCcCEEEECCcCHHHHHHHHHHhCCCC-CEEEEEeC
Confidence              0 1223799998766544 5788999999996 99988753

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.48  E-value=0.00018  Score=59.20  Aligned_cols=100  Identities=14%  Similarity=0.178  Sum_probs=72.0

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCc---eeeCCCCCCCccHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMT---DFINPDDEPNKSISELV  148 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~~~i  148 (269)
                      +.....++++.+||-+|+|. |..+..+++..|. +|++++.+++..+.+++.    |..   .++.      .++    
T Consensus        64 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~------~d~----  131 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI------QGW----  131 (302)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEE------CCG----
T ss_pred             HHHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE------CCH----
Confidence            44567788999999999986 9999999999887 999999999888877653    322   1221      222    


Q ss_pred             HhhhCCCCccEEEEccC-----C----------hhHHHHHHHHcccCCcEEEEEccC
Q 024295          149 KGITHGMGVDYCFECTG-----V----------PSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~g-----~----------~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      .++ ++ .||+|+-...     .          ...+..+.+.|++| |+++.....
T Consensus       132 ~~~-~~-~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~  185 (302)
T 3hem_A          132 EEF-DE-PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTIT  185 (302)
T ss_dssp             GGC-CC-CCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTT-CEEEEEEEE
T ss_pred             HHc-CC-CccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCC-cEEEEEEEe
Confidence            122 33 8999976321     1          24678889999997 999887543

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.43  E-value=0.00019  Score=59.44  Aligned_cols=102  Identities=11%  Similarity=0.142  Sum_probs=70.6

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHhh
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      +.....+.++.+||.+|+|. |..+..+++..|+ +|++++.+++..+.+++.    |...-+....   .++    .++
T Consensus        82 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~----~~~  152 (318)
T 2fk8_A           82 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLL---QGW----EDF  152 (318)
T ss_dssp             HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE---SCG----GGC
T ss_pred             HHHhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---CCh----HHC
Confidence            34556778999999999987 8888999988888 999999999888887653    3211011111   111    112


Q ss_pred             hCCCCccEEEEc-----cCC---hhHHHHHHHHcccCCcEEEEEcc
Q 024295          152 THGMGVDYCFEC-----TGV---PSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       152 ~~~~~~d~v~d~-----~g~---~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                       ++ .||+|+..     ++.   ...+..+.+.+++| |+++....
T Consensus       153 -~~-~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  195 (318)
T 2fk8_A          153 -AE-PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQSS  195 (318)
T ss_dssp             -CC-CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred             -CC-CcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCC-cEEEEEEe
Confidence             23 79999865     332   33578888999996 99887653

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.43  E-value=5.6e-05  Score=58.88  Aligned_cols=104  Identities=19%  Similarity=0.218  Sum_probs=70.0

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHh
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKG  150 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~  150 (269)
                      +.....+.++.+||.+|+|. |..+..+++..+. .+|++++.+++..+.+++.    +...+ ....   .+...   .
T Consensus        69 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v-~~~~---~d~~~---~  140 (215)
T 2yxe_A           69 MCELLDLKPGMKVLEIGTGC-GYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNV-IVIV---GDGTL---G  140 (215)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTE-EEEE---SCGGG---C
T ss_pred             HHHhhCCCCCCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCe-EEEE---CCccc---C
Confidence            34556788999999999985 9999999998862 3999999999888777652    32211 1111   11111   1


Q ss_pred             hhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEc
Q 024295          151 ITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       151 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ......||+|+.........+.+.+.++++ |+++..-
T Consensus       141 ~~~~~~fD~v~~~~~~~~~~~~~~~~L~pg-G~lv~~~  177 (215)
T 2yxe_A          141 YEPLAPYDRIYTTAAGPKIPEPLIRQLKDG-GKLLMPV  177 (215)
T ss_dssp             CGGGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred             CCCCCCeeEEEECCchHHHHHHHHHHcCCC-cEEEEEE
Confidence            111237999997765443447888999996 9887764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.41  E-value=0.0004  Score=54.78  Aligned_cols=99  Identities=14%  Similarity=0.167  Sum_probs=66.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC-ceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM-TDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      .+.+|||+|+ |.+|...+..+...|+ +|++++|++++.+.+...+. ..+. .+      +.+.+.+..+  ++|+|+
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~-~D------l~~~~~~~~~--~~D~vi   89 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGASDIVV-AN------LEEDFSHAFA--SIDAVV   89 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHTTCSEEEE-CC------TTSCCGGGGT--TCSEEE
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhCCCceEEE-cc------cHHHHHHHHc--CCCEEE
Confidence            4789999996 9999999999988999 99999999998888777666 4332 21      1122333332  799999


Q ss_pred             EccCChh-------------HHHHHHHHccc-CCcEEEEEccCCC
Q 024295          162 ECTGVPS-------------LLSEALETTKV-GKGKVIVIGVGVD  192 (269)
Q Consensus       162 d~~g~~~-------------~~~~~~~~l~~-~~G~~v~~g~~~~  192 (269)
                      +++|...             ....+++.++. +.++++.++....
T Consensus        90 ~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  134 (236)
T 3e8x_A           90 FAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGT  134 (236)
T ss_dssp             ECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTC
T ss_pred             ECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence            9997421             12233343332 2268998886553

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.39  E-value=0.0015  Score=52.23  Aligned_cols=96  Identities=23%  Similarity=0.351  Sum_probs=66.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      ++++++||.+|+|. |..++.+++ .|+ +|++++.++...+.+++    .+..  +....   .++.+.   +.++ .|
T Consensus       118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~---~d~~~~---~~~~-~f  185 (254)
T 2nxc_A          118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVR--PRFLE---GSLEAA---LPFG-PF  185 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCC--CEEEE---SCHHHH---GGGC-CE
T ss_pred             cCCCCEEEEecCCC-cHHHHHHHH-hCC-eEEEEECCHHHHHHHHHHHHHcCCc--EEEEE---CChhhc---CcCC-CC
Confidence            67889999999987 887777776 578 99999999988887765    2332  11111   333332   2223 79


Q ss_pred             cEEEEccCC---hhHHHHHHHHcccCCcEEEEEccC
Q 024295          158 DYCFECTGV---PSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       158 d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      |+|+-....   ...+..+.+.++++ |+++..+..
T Consensus       186 D~Vv~n~~~~~~~~~l~~~~~~Lkpg-G~lils~~~  220 (254)
T 2nxc_A          186 DLLVANLYAELHAALAPRYREALVPG-GRALLTGIL  220 (254)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEEE
T ss_pred             CEEEECCcHHHHHHHHHHHHHHcCCC-CEEEEEeec
Confidence            999865422   23567788899996 999887643

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.38  E-value=0.00047  Score=54.09  Aligned_cols=105  Identities=15%  Similarity=0.128  Sum_probs=69.5

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhC
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .....++.+||.+|+| .|..+..+++..+ ..+|++++.+++..+.+++    .|...-+....   .+..+.+.++..
T Consensus        64 l~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~---~d~~~~~~~~~~  139 (229)
T 2avd_A           64 LARLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL---KPALETLDELLA  139 (229)
T ss_dssp             HHHHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHHHHH
T ss_pred             HHHhcCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEE---cCHHHHHHHHHh
Confidence            3445678899999998 5999999998764 3499999999988887765    24311111111   334444433322


Q ss_pred             C---CCccEEEEccCC---hhHHHHHHHHcccCCcEEEEEc
Q 024295          154 G---MGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       154 ~---~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .   ..||+|+-....   ...+..+.+.+++| |.++...
T Consensus       140 ~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~  179 (229)
T 2avd_A          140 AGEAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVLR  179 (229)
T ss_dssp             TTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             cCCCCCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEEC
Confidence            1   379998754332   24588899999996 9988754

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.37  E-value=0.00014  Score=57.76  Aligned_cols=97  Identities=13%  Similarity=0.096  Sum_probs=67.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC----c-eeeCCCCCCCccHHHHHHhhhCCCC
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM----T-DFINPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~----~-~v~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      ..+|.+||-+|+|. |..+..+++..+. ++++++.+++..+.+++...    . .++.      .++.+......+ ..
T Consensus        58 ~~~G~rVLdiG~G~-G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~------~~a~~~~~~~~~-~~  128 (236)
T 3orh_A           58 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLK------GLWEDVAPTLPD-GH  128 (236)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEE------SCHHHHGGGSCT-TC
T ss_pred             ccCCCeEEEECCCc-cHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEe------ehHHhhcccccc-cC
Confidence            35789999999985 8888888877666 89999999988888876432    1 1221      334333333333 37


Q ss_pred             ccEE-EEccCC----------hhHHHHHHHHcccCCcEEEEEc
Q 024295          157 VDYC-FECTGV----------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       157 ~d~v-~d~~g~----------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ||.| +|++..          ...+.++.+.|+|| |+++.+.
T Consensus       129 FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPG-G~l~f~~  170 (236)
T 3orh_A          129 FDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYCN  170 (236)
T ss_dssp             EEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEECC
T ss_pred             CceEEEeeeecccchhhhcchhhhhhhhhheeCCC-CEEEEEe
Confidence            9988 465432          22467788999997 9998764

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.37  E-value=0.00086  Score=55.42  Aligned_cols=92  Identities=14%  Similarity=0.179  Sum_probs=61.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHH--cCCCeEEEEcCCcch--HHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           86 SSVAVLGLGTVGLGAVDGARM--HGAAKIIGIDKNPWK--KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~--~g~~~v~~~~~~~~~--~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      -+|.|+|+|.+|...+..+..  -+.+.+.+.++++++  .+.++++|.....       .++ +.+.+.++..++|+||
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~-------~~~-e~ll~~~~~~~iDvV~   76 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY-------AGV-EGLIKLPEFADIDFVF   76 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES-------SHH-HHHHHSGGGGGEEEEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCccc-------CCH-HHHHhccCCCCCcEEE
Confidence            478999999999988777743  456445556666666  5667778864221       222 3343332234899999


Q ss_pred             EccCChhHHHHHHHHccc--CCcEEEE
Q 024295          162 ECTGVPSLLSEALETTKV--GKGKVIV  186 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~--~~G~~v~  186 (269)
                      ++++...+.+.+...++.  | .+++.
T Consensus        77 ~atp~~~h~~~a~~al~a~~G-k~Vi~  102 (312)
T 1nvm_B           77 DATSASAHVQNEALLRQAKPG-IRLID  102 (312)
T ss_dssp             ECSCHHHHHHHHHHHHHHCTT-CEEEE
T ss_pred             ECCChHHHHHHHHHHHHhCCC-CEEEE
Confidence            999987777788888877  6 66655

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.35  E-value=0.00068  Score=54.30  Aligned_cols=103  Identities=20%  Similarity=0.269  Sum_probs=66.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCc-ee--eCCCCCCCccHHHHHH---hhhCCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMT-DF--INPDDEPNKSISELVK---GITHGM  155 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~v--~~~~~~~~~~~~~~i~---~~~~~~  155 (269)
                      +++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+.+ ++.. ..  .|-.+  .++..+.+.   +.. + 
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~-g-   81 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFGPRVHALRSDIAD--LNEIAVLGAAAGQTL-G-   81 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHH-S-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC--HHHHHHHHHHHHHHh-C-
Confidence            5789999986 8999999999888999 99999999887766543 4422 11  23222  122222222   222 2 


Q ss_pred             CccEEEEccCChh-------------------------HHHHHHHHcccCCcEEEEEccCCC
Q 024295          156 GVDYCFECTGVPS-------------------------LLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       156 ~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                      ++|++++++|...                         ..+.++..++.+ |+++.++....
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~~~  142 (255)
T 4eso_A           82 AIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREG-GSIVFTSSVAD  142 (255)
T ss_dssp             SEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECCGGG
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CEEEEECChhh
Confidence            7999999887411                         123334455664 89999876543

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.32  E-value=0.0022  Score=53.66  Aligned_cols=133  Identities=12%  Similarity=0.120  Sum_probs=81.2

Q ss_pred             CeEEEEcCChhHHHHHHHHH-H-cCCCeE-EEEcCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           86 SSVAVLGLGTVGLGAVDGAR-M-HGAAKI-IGIDKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~-~-~g~~~v-~~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      -+|.|+|+|.+|...++.++ . .++ ++ .+.++++++.+. ++++|...++       .++.+.+    ...++|+|+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~-~~vav~d~~~~~~~~~a~~~g~~~~~-------~~~~~~l----~~~~~D~V~   76 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGV-KLVAACALDSNQLEWAKNELGVETTY-------TNYKDMI----DTENIDAIF   76 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSE-EEEEEECSCHHHHHHHHHTTCCSEEE-------SCHHHHH----TTSCCSEEE
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCc-EEEEEecCCHHHHHHHHHHhCCCccc-------CCHHHHh----cCCCCCEEE
Confidence            47899999999988777776 4 366 54 456777777655 4557765444       2233322    233799999


Q ss_pred             EccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hC-CceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          162 ECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CG-GRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      .|+....+...+..+++.  |+-|++..+.... .-....+.    .+ +..+.......  ....+..+.+++.+|.+
T Consensus        77 i~tp~~~h~~~~~~al~~--G~~v~~eKp~~~~-~~~~~~l~~~a~~~~~~~~~~~~~~r--~~p~~~~~~~~i~~g~i  150 (346)
T 3cea_A           77 IVAPTPFHPEMTIYAMNA--GLNVFCEKPLGLD-FNEVDEMAKVIKSHPNQIFQSGFMRR--YDDSYRYAKKIVDNGDI  150 (346)
T ss_dssp             ECSCGGGHHHHHHHHHHT--TCEEEECSCCCSC-HHHHHHHHHHHHTCTTSCEECCCGGG--TCHHHHHHHHHHHTTTT
T ss_pred             EeCChHhHHHHHHHHHHC--CCEEEEcCCCCCC-HHHHHHHHHHHHhCCCCeEEEecccc--cCHHHHHHHHHHHcCCC
Confidence            999887777888888877  5656665433211 11111122    23 44443222111  22358888999999875

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=97.31  E-value=0.0016  Score=52.91  Aligned_cols=98  Identities=12%  Similarity=0.144  Sum_probs=69.2

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCc---eeeCCCCCCCccHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMT---DFINPDDEPNKSISELV  148 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~~~i  148 (269)
                      +.....+.++.+||.+|+|. |..+..+++..|. +|++++.+++..+.+++.    |..   .++.      .++    
T Consensus        56 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~------~d~----  123 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLL------AGW----  123 (287)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE------SCG----
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEE------CCh----
Confidence            34556778899999999987 8888899987898 999999999888877653    321   1221      111    


Q ss_pred             HhhhCCCCccEEEEc-----cC---ChhHHHHHHHHcccCCcEEEEEc
Q 024295          149 KGITHGMGVDYCFEC-----TG---VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~-----~g---~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .++ + ..||+|+-.     ++   ....+..+.+.+++| |+++...
T Consensus       124 ~~~-~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  168 (287)
T 1kpg_A          124 EQF-D-EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHT  168 (287)
T ss_dssp             GGC-C-CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             hhC-C-CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCC-CEEEEEE
Confidence            122 1 379999754     22   134578889999997 9988765

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=97.29  E-value=0.00061  Score=51.52  Aligned_cols=99  Identities=17%  Similarity=0.247  Sum_probs=66.2

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC--ceeeCCCCCCCccHHHHHHhhh
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM--TDFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~--~~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      ...++++++||-+|+|. |..+..+++. +. +|+++|.+++..+.+++    .+.  -.++....   .+    +....
T Consensus        17 ~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~---~~----l~~~~   86 (185)
T 3mti_A           17 AEVLDDESIVVDATMGN-GNDTAFLAGL-SK-KVYAFDVQEQALGKTSQRLSDLGIENTELILDGH---EN----LDHYV   86 (185)
T ss_dssp             HTTCCTTCEEEESCCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCG---GG----GGGTC
T ss_pred             HHhCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcH---HH----HHhhc
Confidence            45678899999999986 8888888887 66 99999999988877755    232  12222111   11    11222


Q ss_pred             CCCCccEEEEccCC-----------h----hHHHHHHHHcccCCcEEEEEcc
Q 024295          153 HGMGVDYCFECTGV-----------P----SLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       153 ~~~~~d~v~d~~g~-----------~----~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      + ..||+|+-..+.           +    ..+..+.+.+++| |+++.+..
T Consensus        87 ~-~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~  136 (185)
T 3mti_A           87 R-EPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVG-GRLAIMIY  136 (185)
T ss_dssp             C-SCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             c-CCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCC-cEEEEEEe
Confidence            2 379998755321           1    2357888999996 99887643

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.27  E-value=0.0014  Score=53.12  Aligned_cols=103  Identities=18%  Similarity=0.207  Sum_probs=72.1

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhC-----C--Cc--eeeCCCCCCCccHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKAF-----G--MT--DFINPDDEPNKSIS  145 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~~-----g--~~--~v~~~~~~~~~~~~  145 (269)
                      +.....++++.+||.+|+| .|..+..+++..+ ..+|++++.+++..+.+++.     |  .+  .++..      +..
T Consensus        91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~------d~~  163 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS------DLA  163 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS------CGG
T ss_pred             HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEEC------chH
Confidence            4456778899999999998 5889999998764 23999999999888777652     3  22  22221      111


Q ss_pred             HHHHhhhCCCCccEEEEccCCh-hHHHHHHHHcccCCcEEEEEcc
Q 024295          146 ELVKGITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       146 ~~i~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      +.   ..+...+|+|+-....+ ..+..+.+.++++ |+++.+..
T Consensus       164 ~~---~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  204 (280)
T 1i9g_A          164 DS---ELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYVA  204 (280)
T ss_dssp             GC---CCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred             hc---CCCCCceeEEEECCcCHHHHHHHHHHhCCCC-CEEEEEeC
Confidence            10   11223799998766544 5788999999996 99988754

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.26  E-value=0.0022  Score=51.08  Aligned_cols=103  Identities=18%  Similarity=0.200  Sum_probs=67.8

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhh-
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMH--GAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGIT-  152 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~-  152 (269)
                      ....+.++||.+|+|. |..+..+++.+  +. +|++++.+++..+.+++    .|...-+....   .+..+.+..+. 
T Consensus        75 ~~~~~~~~VLeiG~G~-G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~---gda~~~l~~l~~  149 (247)
T 1sui_A           75 LKLINAKNTMEIGVYT-GYSLLATALAIPEDG-KILAMDINKENYELGLPVIKKAGVDHKIDFRE---GPALPVLDEMIK  149 (247)
T ss_dssp             HHHTTCCEEEEECCGG-GHHHHHHHHHSCTTC-EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHH
T ss_pred             HHhhCcCEEEEeCCCc-CHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEE---CCHHHHHHHHHh
Confidence            3445678999999876 88899999986  45 99999999988877765    34321111111   33333333331 


Q ss_pred             ---CCCCccEEEEccC---ChhHHHHHHHHcccCCcEEEEEc
Q 024295          153 ---HGMGVDYCFECTG---VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       153 ---~~~~~d~v~d~~g---~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                         ....||+||-...   ....+..+.+.+++| |.++.-.
T Consensus       150 ~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~d~  190 (247)
T 1sui_A          150 DEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYDN  190 (247)
T ss_dssp             SGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEEC
T ss_pred             ccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCC-eEEEEec
Confidence               1237999984332   234578899999997 9987643

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=97.26  E-value=0.00035  Score=55.97  Aligned_cols=102  Identities=17%  Similarity=0.136  Sum_probs=71.0

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc----eeeCCCCCCCccHHHHHHhh
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT----DFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~----~v~~~~~~~~~~~~~~i~~~  151 (269)
                      +.....++++.+||.+|+|. |..+..+++..+. +|++++.+++..+.+++....    .++..+-   .+.     . 
T Consensus        47 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~-----~-  115 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGSGL-GGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGNNKIIFEANDI---LTK-----E-  115 (266)
T ss_dssp             HTTTCCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSCTTEEEEECCT---TTC-----C-
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEECcc---ccC-----C-
Confidence            44556778899999999984 8889999997787 999999999999988875422    1221111   110     1 


Q ss_pred             hCCCCccEEEEccCC--------hhHHHHHHHHcccCCcEEEEEcc
Q 024295          152 THGMGVDYCFECTGV--------PSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      .+...||+|+-.-.-        ...+..+.+.+++| |+++....
T Consensus       116 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  160 (266)
T 3ujc_A          116 FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPT-GTLLITDY  160 (266)
T ss_dssp             CCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCC-CEEEEEEe
Confidence            122389999865321        22467888899996 99887753

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.26  E-value=0.00021  Score=55.14  Aligned_cols=134  Identities=16%  Similarity=0.239  Sum_probs=79.9

Q ss_pred             cccceEe-eccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295           38 TWSEYMV-IDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID  116 (269)
Q Consensus        38 ~~a~~~~-v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~  116 (269)
                      .|.+|.. .+....+.+++.+++..+..-...  .....+.  ..++++.+||.+|+|. |..+..+++ .+..+|++++
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~l~--~~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~vD   90 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGNHQTTQ--LAMLGIE--RAMVKPLTVADVGTGS-GILAIAAHK-LGAKSVLATD   90 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CCHHHHH--HHHHHHH--HHCSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEEEE
T ss_pred             cccccccCCCCceeEEecCCcccCCCCCccHH--HHHHHHH--HhccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEEE
Confidence            4778877 777888899888776665321111  1111111  1256889999999987 777777776 4555999999


Q ss_pred             CCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCCh---hHHHHHHHHcccCCcEEEEE
Q 024295          117 KNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVKGITHGMGVDYCFECTGVP---SLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       117 ~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~  187 (269)
                      .+++..+.+++    .+..  .++..+      +.    +..+ ..+|+|+-.....   ..+..+.+.++++ |+++..
T Consensus        91 ~s~~~~~~a~~~~~~~~~~~v~~~~~d------~~----~~~~-~~fD~i~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~  158 (205)
T 3grz_A           91 ISDESMTAAEENAALNGIYDIALQKTS------LL----ADVD-GKFDLIVANILAEILLDLIPQLDSHLNED-GQVIFS  158 (205)
T ss_dssp             SCHHHHHHHHHHHHHTTCCCCEEEESS------TT----TTCC-SCEEEEEEESCHHHHHHHGGGSGGGEEEE-EEEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCCceEEEecc------cc----ccCC-CCceEEEECCcHHHHHHHHHHHHHhcCCC-CEEEEE
Confidence            99988777765    2432  222211      11    1112 3899998654332   1245566688996 998876


Q ss_pred             cc
Q 024295          188 GV  189 (269)
Q Consensus       188 g~  189 (269)
                      +.
T Consensus       159 ~~  160 (205)
T 3grz_A          159 GI  160 (205)
T ss_dssp             EE
T ss_pred             ec
Confidence            43

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.25  E-value=0.0043  Score=52.40  Aligned_cols=93  Identities=13%  Similarity=0.052  Sum_probs=63.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      -+|+|+|+|.+|..+++.+.. .. .|.+.+++.++.+.+++......+|..+   .+   .+.+...  +.|+|+++++
T Consensus        17 mkilvlGaG~vG~~~~~~L~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~d---~~---~l~~~~~--~~DvVi~~~p   86 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD-EF-DVYIGDVNNENLEKVKEFATPLKVDASN---FD---KLVEVMK--EFELVIGALP   86 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHTTTSEEEECCTTC---HH---HHHHHHT--TCSEEEECCC
T ss_pred             cEEEEECCCHHHHHHHHHHhc-CC-CeEEEEcCHHHHHHHhccCCcEEEecCC---HH---HHHHHHh--CCCEEEEecC
Confidence            369999999999988877754 34 8888999988888887654333344432   22   2333332  6899999998


Q ss_pred             ChhHHHHHHHHcccCCcEEEEEcc
Q 024295          166 VPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       166 ~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      .......+-.++..+ -+++.+..
T Consensus        87 ~~~~~~v~~~~~~~g-~~yvD~s~  109 (365)
T 3abi_A           87 GFLGFKSIKAAIKSK-VDMVDVSF  109 (365)
T ss_dssp             GGGHHHHHHHHHHHT-CEEEECCC
T ss_pred             CcccchHHHHHHhcC-cceEeeec
Confidence            664555555666774 67777653

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.25  E-value=0.0035  Score=50.28  Aligned_cols=80  Identities=13%  Similarity=0.181  Sum_probs=50.1

Q ss_pred             CCCeEEEEcC-Ch--hHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC--ce--eeCCCCCCCccHHHHHHhhh
Q 024295           84 KGSSVAVLGL-GT--VGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM--TD--FINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~--~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~--~~--v~~~~~~~~~~~~~~i~~~~  152 (269)
                      +++++||+|+ |.  +|.+.++.+...|+ +|+.++++++..+.+++    .+.  -.  ..|-.+  .++..+.+.+..
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~   82 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTN--DAEIETCFASIK   82 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSS--SHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCC--HHHHHHHHHHHH
Confidence            4789999985 55  99998888888899 99999988655444433    332  11  223332  233333333322


Q ss_pred             CC-CCccEEEEccCC
Q 024295          153 HG-MGVDYCFECTGV  166 (269)
Q Consensus       153 ~~-~~~d~v~d~~g~  166 (269)
                      .. .++|++++++|.
T Consensus        83 ~~~g~id~li~~Ag~   97 (266)
T 3oig_A           83 EQVGVIHGIAHCIAF   97 (266)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHhCCeeEEEEcccc
Confidence            11 279999998863

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.24  E-value=0.0048  Score=50.22  Aligned_cols=87  Identities=20%  Similarity=0.262  Sum_probs=62.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      .+|.|+|.|.+|......+...|. +|++.++++++.+.+++.|....        .+..+.+.      ..|+||-|+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~~~~~~~------~aDvvi~~vp   66 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEKAEELAALGAERA--------ATPCEVVE------SCPVTFAMLA   66 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEEC--------SSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec--------CCHHHHHh------cCCEEEEEcC
Confidence            478999999999999888888898 99999999999998888765321        23333332      4689998887


Q ss_pred             ChhHHHHHH-------HHcccCCcEEEEEc
Q 024295          166 VPSLLSEAL-------ETTKVGKGKVIVIG  188 (269)
Q Consensus       166 ~~~~~~~~~-------~~l~~~~G~~v~~g  188 (269)
                      .+..+...+       ..++++ ..++..+
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~~-~~vi~~s   95 (287)
T 3pef_A           67 DPAAAEEVCFGKHGVLEGIGEG-RGYVDMS   95 (287)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTT-CEEEECS
T ss_pred             CHHHHHHHHcCcchHhhcCCCC-CEEEeCC
Confidence            654545444       455664 5555553

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.24  E-value=0.0016  Score=53.19  Aligned_cols=77  Identities=17%  Similarity=0.185  Sum_probs=53.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCce-e--eCCCCCCCccHHHHHHhhhCCCCcc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTD-F--INPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~-v--~~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+ ++... .  .|-.+   .+-.+.+.+.. + ++|
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d---~~~v~~~~~~~-~-~iD   88 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTMAGQVEVRELDLQD---LSSVRRFADGV-S-GAD   88 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTSSSEEEEEECCTTC---HHHHHHHHHTC-C-CEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCeeEEEcCCCC---HHHHHHHHHhc-C-CCC
Confidence            5789999986 8999999998888999 99999999887776544 44321 1  23222   33333333322 2 799


Q ss_pred             EEEEccCC
Q 024295          159 YCFECTGV  166 (269)
Q Consensus       159 ~v~d~~g~  166 (269)
                      ++++++|.
T Consensus        89 ~lv~nAg~   96 (291)
T 3rd5_A           89 VLINNAGI   96 (291)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcC
Confidence            99999874

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.23  E-value=0.00071  Score=52.82  Aligned_cols=103  Identities=14%  Similarity=0.211  Sum_probs=67.4

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhC
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMH--GAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      ....++.+||-+|+|. |..+..+++..  +. +|++++.+++..+.+++    .|...-+....   .+..+.+..+..
T Consensus        54 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~  128 (223)
T 3duw_A           54 VQIQGARNILEIGTLG-GYSTIWLARGLSSGG-RVVTLEASEKHADIARSNIERANLNDRVEVRT---GLALDSLQQIEN  128 (223)
T ss_dssp             HHHHTCSEEEEECCTT-SHHHHHHHTTCCSSC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHHHHH
T ss_pred             HHhhCCCEEEEecCCc-cHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHHh
Confidence            3455788999999985 88889999887  45 99999999988777754    34321111111   334333333321


Q ss_pred             C--CCccEEEEccCC---hhHHHHHHHHcccCCcEEEEEc
Q 024295          154 G--MGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       154 ~--~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .  ..||+||-....   +..+..+.+.+++| |.++.-.
T Consensus       129 ~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~  167 (223)
T 3duw_A          129 EKYEPFDFIFIDADKQNNPAYFEWALKLSRPG-TVIIGDN  167 (223)
T ss_dssp             TTCCCCSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEES
T ss_pred             cCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCC-cEEEEeC
Confidence            1  369999843322   33578888999996 9877654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.22  E-value=0.0046  Score=44.09  Aligned_cols=76  Identities=18%  Similarity=0.187  Sum_probs=52.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceee-CCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      +.+|+|+|+|.+|...++.+...|. +|+++++++++.+.+++ ++...+. +..+   .   +.+.+. .-.++|+++.
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~---~---~~l~~~-~~~~~d~vi~   75 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDALVINGDCTK---I---KTLEDA-GIEDADMYIA   75 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSEEEESCTTS---H---HHHHHT-TTTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCcEEEEcCCCC---H---HHHHHc-CcccCCEEEE
Confidence            3579999999999999998888898 89999998888777664 5654332 2211   1   222222 1237999999


Q ss_pred             ccCChh
Q 024295          163 CTGVPS  168 (269)
Q Consensus       163 ~~g~~~  168 (269)
                      +++...
T Consensus        76 ~~~~~~   81 (140)
T 1lss_A           76 VTGKEE   81 (140)
T ss_dssp             CCSCHH
T ss_pred             eeCCch
Confidence            998753

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.21  E-value=0.0044  Score=49.41  Aligned_cols=79  Identities=20%  Similarity=0.241  Sum_probs=51.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCc-eee--CCCCCCCccHHHHHHhhh--CCCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMT-DFI--NPDDEPNKSISELVKGIT--HGMG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~-~v~--~~~~~~~~~~~~~i~~~~--~~~~  156 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+. +++.. ..+  |-.+  ++++.+.+.+..  -+ +
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g-~   80 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSS--EADWTLVMAAVQRRLG-T   80 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTC--HHHHHHHHHHHHHHHC-S
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEEEccCCC--HHHHHHHHHHHHHHcC-C
Confidence            4678999986 8999999998888899 9999999887766543 34432 122  2222  122222222221  12 6


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|++++++|.
T Consensus        81 id~lv~~Ag~   90 (253)
T 1hxh_A           81 LNVLVNNAGI   90 (253)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999999874

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=97.21  E-value=0.00018  Score=57.42  Aligned_cols=100  Identities=22%  Similarity=0.272  Sum_probs=68.8

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSISELV  148 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i  148 (269)
                      +.....++++.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++    .|..   .++..+-   .++    
T Consensus        28 l~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~---~~~----   98 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA---AGY----   98 (256)
T ss_dssp             HHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC---TTC----
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh---HhC----
Confidence            44566788999999999987 8888999998888 99999999887777654    3321   1221111   111    


Q ss_pred             HhhhCCCCccEEEEcc------CChhHHHHHHHHcccCCcEEEEEc
Q 024295          149 KGITHGMGVDYCFECT------GVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                         .....||+|+-.-      .....+..+.+.+++| |+++...
T Consensus        99 ---~~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~~~~  140 (256)
T 1nkv_A           99 ---VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIGE  140 (256)
T ss_dssp             ---CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEEE
T ss_pred             ---CcCCCCCEEEECCChHhcCCHHHHHHHHHHHcCCC-eEEEEec
Confidence               1123799998421      2234578888999996 9988754

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.19  E-value=0.0014  Score=52.00  Aligned_cols=79  Identities=16%  Similarity=0.081  Sum_probs=53.2

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCce---eeCCCCCCCccHHHHHHhhhCCCC
Q 024295           82 VEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTD---FINPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        82 ~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~---v~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      -.+++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+.+ +....   ..|-.+   .+..+.+.+..  .+
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~--~~   84 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALKDNYTIEVCNLAN---KEECSNLISKT--SN   84 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTS---HHHHHHHHHTC--SC
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhccCccEEEcCCCC---HHHHHHHHHhc--CC
Confidence            346889999986 8999999998888999 99999999887776543 33222   122222   33223332222  27


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|++++++|.
T Consensus        85 id~li~~Ag~   94 (249)
T 3f9i_A           85 LDILVCNAGI   94 (249)
T ss_dssp             CSEEEECCC-
T ss_pred             CCEEEECCCC
Confidence            9999999873

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.19  E-value=0.00083  Score=51.31  Aligned_cols=100  Identities=19%  Similarity=0.234  Sum_probs=68.1

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCC---ceeeCCCCCCCccHHHHHHh
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGM---TDFINPDDEPNKSISELVKG  150 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~---~~v~~~~~~~~~~~~~~i~~  150 (269)
                      ...++++.+||.+|+|. |..+..+++..+ ..+|++++.+++..+.+++    .|.   ..++..+-   .++    ..
T Consensus        17 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~----~~   88 (197)
T 3eey_A           17 KMFVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH---QNM----DK   88 (197)
T ss_dssp             HHHCCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG---GGG----GG
T ss_pred             HhcCCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH---HHH----hh
Confidence            34677899999999987 888889999864 2399999999988877755    332   12232221   111    11


Q ss_pred             hhCCCCccEEEEccCC---------------hhHHHHHHHHcccCCcEEEEEc
Q 024295          151 ITHGMGVDYCFECTGV---------------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       151 ~~~~~~~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ..+ ..||+|+-..+.               ...+..+.+.++++ |+++...
T Consensus        89 ~~~-~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g-G~l~~~~  139 (197)
T 3eey_A           89 YID-CPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG-GIITVVI  139 (197)
T ss_dssp             TCC-SCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             hcc-CCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCC-CEEEEEE
Confidence            222 389999855432               23688899999996 9988765

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.18  E-value=0.0021  Score=52.08  Aligned_cols=80  Identities=21%  Similarity=0.335  Sum_probs=51.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCC--c-ee--eCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGM--T-DF--INPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~--~-~v--~~~~~~~~~~~~~~i~~~~~  153 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    ..+.  . .+  .|-.+  .+.+.+.+.+...
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~  107 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN--EEDILSMFSAIRS  107 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCC--HHHHHHHHHHHHH
Confidence            4688999986 9999999998888999 9999999877655432    2331  1 11  23322  1223222222211


Q ss_pred             -CCCccEEEEccCC
Q 024295          154 -GMGVDYCFECTGV  166 (269)
Q Consensus       154 -~~~~d~v~d~~g~  166 (269)
                       -.++|++++++|.
T Consensus       108 ~~g~iD~vi~~Ag~  121 (279)
T 1xg5_A          108 QHSGVDICINNAGL  121 (279)
T ss_dssp             HHCCCSEEEECCCC
T ss_pred             hCCCCCEEEECCCC
Confidence             1279999999873

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.18  E-value=0.00083  Score=52.97  Aligned_cols=104  Identities=18%  Similarity=0.200  Sum_probs=68.6

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhC-
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~-  153 (269)
                      .+..++.+||.+|+| .|..+..+++.++ ..+|++++.+++..+.+++    .|...-+....   .+..+.+.++.. 
T Consensus        68 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~---~d~~~~l~~l~~~  143 (232)
T 3cbg_A           68 ISLTGAKQVLEIGVF-RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRL---GPALATLEQLTQG  143 (232)
T ss_dssp             HHHHTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE---SCHHHHHHHHHTS
T ss_pred             HHhcCCCEEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHHhc
Confidence            344567899999998 5999999999874 2399999999988887765    24322111122   344444444322 


Q ss_pred             C--CCccEEEEccCC---hhHHHHHHHHcccCCcEEEEEc
Q 024295          154 G--MGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       154 ~--~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +  ..||+||-....   ...+..+.+.+++| |.++.-.
T Consensus       144 ~~~~~fD~V~~d~~~~~~~~~l~~~~~~Lkpg-G~lv~~~  182 (232)
T 3cbg_A          144 KPLPEFDLIFIDADKRNYPRYYEIGLNLLRRG-GLMVIDN  182 (232)
T ss_dssp             SSCCCEEEEEECSCGGGHHHHHHHHHHTEEEE-EEEEEEC
T ss_pred             CCCCCcCEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEeC
Confidence            1  379999843322   23578889999996 9987753

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.18  E-value=0.0055  Score=47.38  Aligned_cols=92  Identities=14%  Similarity=0.257  Sum_probs=62.0

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      +|||+|+ |.+|...++.+...|. +|++++|++++.+.+. .+...+. |..+   .+. +.+      .++|+||+++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~-~~~~~~~~D~~d---~~~-~~~------~~~d~vi~~a   69 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQTH-KDINILQKDIFD---LTL-SDL------SDQNVVVDAY   69 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHHC-SSSEEEECCGGG---CCH-HHH------TTCSEEEECC
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhcc-CCCeEEeccccC---hhh-hhh------cCCCEEEECC
Confidence            5899996 9999999999999998 9999999987766554 3333222 2222   222 222      2789999999


Q ss_pred             CCh--------hHHHHHHHHcccC-CcEEEEEccC
Q 024295          165 GVP--------SLLSEALETTKVG-KGKVIVIGVG  190 (269)
Q Consensus       165 g~~--------~~~~~~~~~l~~~-~G~~v~~g~~  190 (269)
                      |..        .....+++.++.. .++++.++..
T Consensus        70 g~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           70 GISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             CSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             cCCccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            763        1235566666542 2688888654

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.18  E-value=0.0036  Score=50.81  Aligned_cols=103  Identities=22%  Similarity=0.268  Sum_probs=63.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcch-HH----HHHhCCCce-e--eCCCCCCCccHHHHHHhhh--
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWK-KE----KGKAFGMTD-F--INPDDEPNKSISELVKGIT--  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~-~~----~~~~~g~~~-v--~~~~~~~~~~~~~~i~~~~--  152 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|++++++.++ .+    .+++.+... .  .|-.+  .+++.+.+.+..  
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV--VEDIVRMFEEAVKI  104 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4688999986 8999999999888999 99999887643 22    223445322 2  23222  122222222221  


Q ss_pred             CCCCccEEEEccCCh----------h---------------HHHHHHHHcccCCcEEEEEccCC
Q 024295          153 HGMGVDYCFECTGVP----------S---------------LLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       153 ~~~~~d~v~d~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      -+ ++|++++++|..          .               ..+.++..++.+ |+++.++...
T Consensus       105 ~g-~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~~  166 (283)
T 1g0o_A          105 FG-KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSIT  166 (283)
T ss_dssp             HS-CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCGG
T ss_pred             cC-CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CeEEEEechh
Confidence            12 799999998741          0               123445555564 9999997644

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=97.17  E-value=0.00096  Score=52.94  Aligned_cols=105  Identities=12%  Similarity=0.082  Sum_probs=68.2

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc-eeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           82 VEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT-DFINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        82 ~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      +-+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+..+.-... ...|-.+   .+-.+.+.+.. + ++|+
T Consensus         8 lf~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~-g-~iDi   81 (242)
T 4b79_A            8 IYAGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHAPRHPRIRREELDITD---SQRLQRLFEAL-P-RLDV   81 (242)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTSCCCTTEEEEECCTTC---HHHHHHHHHHC-S-CCSE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhhhhcCCeEEEEecCCC---HHHHHHHHHhc-C-CCCE
Confidence            346899999986 8999999999999999 999999988766543222211 1223332   33334443433 3 7999


Q ss_pred             EEEccCChh-----------------------HHHHHHHHcccCCcEEEEEccCCC
Q 024295          160 CFECTGVPS-----------------------LLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       160 v~d~~g~~~-----------------------~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                      +++++|...                       ..+.++..++.++|++|.++...+
T Consensus        82 LVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~  137 (242)
T 4b79_A           82 LVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYS  137 (242)
T ss_dssp             EEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGG
T ss_pred             EEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence            999987411                       123444455432399999986543

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.17  E-value=0.004  Score=49.18  Aligned_cols=77  Identities=21%  Similarity=0.297  Sum_probs=51.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hC-CCcee-eCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AF-GMTDF-INPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~-g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. ++ +...+ .|-.+   .+-.+.+.+  .-.++|+
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~--~~~~id~   79 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGD---WEATERALG--SVGPVDL   79 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HHHHHHHHT--TCCCCCE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCCEEEEeCCC---HHHHHHHHH--HcCCCCE
Confidence            5788999986 8999999999988999 9999999887766543 33 23222 22222   222222222  1126999


Q ss_pred             EEEccCC
Q 024295          160 CFECTGV  166 (269)
Q Consensus       160 v~d~~g~  166 (269)
                      +++++|.
T Consensus        80 vi~~Ag~   86 (244)
T 3d3w_A           80 LVNNAAV   86 (244)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999873

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.17  E-value=0.0048  Score=47.91  Aligned_cols=92  Identities=20%  Similarity=0.293  Sum_probs=62.1

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      +|||+|+ |.+|...+..+...|. +|++++|++++.+.+...+...+. |..+   .+. +.+     + ++|+||+++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~D~~d---~~~-~~~-----~-~~d~vi~~a   70 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRLGATVATLVKEPLV---LTE-ADL-----D-SVDAVVDAL   70 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHTCTTSEEEECCGGG---CCH-HHH-----T-TCSEEEECC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecccccccccCCCceEEeccccc---ccH-hhc-----c-cCCEEEECC
Confidence            5899996 9999999999988899 999999998877655444444332 2222   222 222     1 789999999


Q ss_pred             CCh----------hHHHHHHHHcccCCcEEEEEcc
Q 024295          165 GVP----------SLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       165 g~~----------~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      |..          .....+++.++..+++++.++.
T Consensus        71 g~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           71 SVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             CCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             ccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence            752          1234556666543278888864

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.17  E-value=0.00095  Score=52.13  Aligned_cols=104  Identities=18%  Similarity=0.185  Sum_probs=68.3

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhCC
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      ....++.+||-+|+|. |..+..+++.++ ..+|++++.+++..+.+++    .|...-+....   .+..+.+......
T Consensus        60 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~~~~  135 (225)
T 3tr6_A           60 VKLMQAKKVIDIGTFT-GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRL---SPAKDTLAELIHA  135 (225)
T ss_dssp             HHHHTCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHHHHTT
T ss_pred             HHhhCCCEEEEeCCcc-hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe---CCHHHHHHHhhhc
Confidence            3445778999999986 888999998764 3499999999988877765    34321111111   3343444333321


Q ss_pred             ---CCccEEEEccCC---hhHHHHHHHHcccCCcEEEEEc
Q 024295          155 ---MGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       155 ---~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                         ..||+|+-....   ...+..+.+.+++| |.++...
T Consensus       136 ~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~  174 (225)
T 3tr6_A          136 GQAWQYDLIYIDADKANTDLYYEESLKLLREG-GLIAVDN  174 (225)
T ss_dssp             TCTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             cCCCCccEEEECCCHHHHHHHHHHHHHhcCCC-cEEEEeC
Confidence               389999843332   23578888999996 9988654

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.17  E-value=0.0013  Score=53.46  Aligned_cols=72  Identities=19%  Similarity=0.221  Sum_probs=51.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCC-----Cc-eeeCCCCCCCccHHHHHHhhhCCC
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFG-----MT-DFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g-----~~-~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      -+++++||+|+|++|.+++..+...|+++|++++|+.++.+.+ ++++     .. ..++.     +++.+.+.      
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~-----~~l~~~l~------  193 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDA-----RGIEDVIA------  193 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECS-----TTHHHHHH------
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCH-----HHHHHHHh------
Confidence            3678999999999999999988889997899999998877654 3332     11 12221     23443332      


Q ss_pred             CccEEEEccC
Q 024295          156 GVDYCFECTG  165 (269)
Q Consensus       156 ~~d~v~d~~g  165 (269)
                      .+|+|++|+.
T Consensus       194 ~~DiVInaTp  203 (283)
T 3jyo_A          194 AADGVVNATP  203 (283)
T ss_dssp             HSSEEEECSS
T ss_pred             cCCEEEECCC
Confidence            5899999985

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.16  E-value=0.013  Score=49.48  Aligned_cols=112  Identities=14%  Similarity=0.163  Sum_probs=75.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC----cch---------HHHHHhCCCceeeCCCCCCCccHHHHHHh
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN----PWK---------KEKGKAFGMTDFINPDDEPNKSISELVKG  150 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~----~~~---------~~~~~~~g~~~v~~~~~~~~~~~~~~i~~  150 (269)
                      ++.+|+|+|+|..|..+++++...|+++|+.++++    .++         ..++++...    ....   .++.+.++ 
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~----~~~~---~~L~eav~-  262 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP----ERLS---GDLETALE-  262 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT----TCCC---SCHHHHHT-
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc----cCch---hhHHHHHc-
Confidence            67899999999999999999999999899999987    544         223333221    1111   55666663 


Q ss_pred             hhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEee
Q 024295          151 ITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGT  212 (269)
Q Consensus       151 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  212 (269)
                           +.|++|-+++..-.-++.++.++++ -.++.+..+.   .+..+...+.-+..+..+
T Consensus       263 -----~ADVlIG~Sap~l~t~emVk~Ma~~-pIIfalSNPt---~E~~p~~a~~~g~~i~at  315 (388)
T 1vl6_A          263 -----GADFFIGVSRGNILKPEWIKKMSRK-PVIFALANPV---PEIDPELAREAGAFIVAT  315 (388)
T ss_dssp             -----TCSEEEECSCSSCSCHHHHTTSCSS-CEEEECCSSS---CSSCHHHHHHTTCSEEEE
T ss_pred             -----cCCEEEEeCCCCccCHHHHHhcCCC-CEEEEcCCCC---CCCCHHHHHHhcCeEEEe
Confidence                 5799999987433456788888885 7777776654   244444444334445444

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.16  E-value=0.00076  Score=53.08  Aligned_cols=102  Identities=20%  Similarity=0.154  Sum_probs=67.7

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC--c--eeeCCCCCCCccHHHHHHhhhC
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM--T--DFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~--~--~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      ....++++.+||-+|+|+ |..+..+++..|..+|++++.+++..+.+++...  .  .++..+.   .+... ... ..
T Consensus        68 ~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~---~~~~~-~~~-~~  141 (230)
T 1fbn_A           68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA---NKPQE-YAN-IV  141 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT---TCGGG-GTT-TS
T ss_pred             cccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCC---CCccc-ccc-cC
Confidence            334577899999999987 8889999998874499999999988777655211  1  1211111   11000 001 12


Q ss_pred             CCCccEEEEccCCh---h-HHHHHHHHcccCCcEEEEE
Q 024295          154 GMGVDYCFECTGVP---S-LLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       154 ~~~~d~v~d~~g~~---~-~~~~~~~~l~~~~G~~v~~  187 (269)
                       ..+|+|+..+..+   . .+..+.+.++++ |+++..
T Consensus       142 -~~~D~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~  177 (230)
T 1fbn_A          142 -EKVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIA  177 (230)
T ss_dssp             -CCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             -ccEEEEEEecCChhHHHHHHHHHHHhCCCC-cEEEEE
Confidence             3799999665443   2 378888999996 998875

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.15  E-value=0.0052  Score=47.75  Aligned_cols=97  Identities=8%  Similarity=0.031  Sum_probs=61.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHH-HcCCCeEEEEcCCcc-hHHHHHhCC--Ccee-eCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           86 SSVAVLGL-GTVGLGAVDGAR-MHGAAKIIGIDKNPW-KKEKGKAFG--MTDF-INPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~-~~g~~~v~~~~~~~~-~~~~~~~~g--~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      ++|||+|+ |.+|.+.++.+. ..|+ +|++++++++ +.+.+...+  ...+ .|..+   .+   .+.+...  ++|+
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d---~~---~~~~~~~--~~d~   76 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPEIIDHERVTVIEGSFQN---PG---XLEQAVT--NAEV   76 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHHHHTSTTEEEEECCTTC---HH---HHHHHHT--TCSE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhhccCCCceEEEECCCCC---HH---HHHHHHc--CCCE
Confidence            46999996 999999988887 8899 9999999887 665553222  2222 12222   22   2333332  7899


Q ss_pred             EEEccCChhH-HHHHHHHcccC-CcEEEEEccCC
Q 024295          160 CFECTGVPSL-LSEALETTKVG-KGKVIVIGVGV  191 (269)
Q Consensus       160 v~d~~g~~~~-~~~~~~~l~~~-~G~~v~~g~~~  191 (269)
                      +++++|.... ...+++.++.. .+++|.++...
T Consensus        77 vv~~ag~~n~~~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           77 VFVGAMESGSDMASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             EEESCCCCHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             EEEcCCCCChhHHHHHHHHHhcCCCeEEEEeece
Confidence            9999986211 34555555432 25888887554

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=97.14  E-value=0.0034  Score=48.50  Aligned_cols=97  Identities=16%  Similarity=0.129  Sum_probs=67.9

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc--eeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT--DFINPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      ..+.++.+||-+|+|. |..+..+++. |. ++++++.+++..+.+++.+..  .++..+-   .+       ......|
T Consensus        42 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~---~~-------~~~~~~~  108 (218)
T 3ou2_A           42 RAGNIRGDVLELASGT-GYWTRHLSGL-AD-RVTALDGSAEMIAEAGRHGLDNVEFRQQDL---FD-------WTPDRQW  108 (218)
T ss_dssp             TTTTSCSEEEEESCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHGGGCCTTEEEEECCT---TS-------CCCSSCE
T ss_pred             hcCCCCCeEEEECCCC-CHHHHHHHhc-CC-eEEEEeCCHHHHHHHHhcCCCCeEEEeccc---cc-------CCCCCce
Confidence            4477888999999986 8888888887 77 999999999999888886522  1221111   11       1223489


Q ss_pred             cEEEEccC-----C---hhHHHHHHHHcccCCcEEEEEccC
Q 024295          158 DYCFECTG-----V---PSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       158 d~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      |+|+-...     .   ...+..+.+.+++| |.++.....
T Consensus       109 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~  148 (218)
T 3ou2_A          109 DAVFFAHWLAHVPDDRFEAFWESVRSAVAPG-GVVEFVDVT  148 (218)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEEC
T ss_pred             eEEEEechhhcCCHHHHHHHHHHHHHHcCCC-eEEEEEeCC
Confidence            99985432     1   33578888999996 998887543

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.14  E-value=0.0021  Score=53.83  Aligned_cols=49  Identities=31%  Similarity=0.359  Sum_probs=41.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD  132 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~  132 (269)
                      .++++|.|.|.|.+|+.+++.++..|+ +|++.+.++++.+..++++++.
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~~~~a~~~ga~~  221 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTA  221 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHhcCCEE
Confidence            478999999999999999999999999 9999998876655666677543

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.14  E-value=0.002  Score=51.25  Aligned_cols=78  Identities=22%  Similarity=0.309  Sum_probs=52.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCceee---CCCCCCCccHHHHHH---hhhCCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDFI---NPDDEPNKSISELVK---GITHGM  155 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v~---~~~~~~~~~~~~~i~---~~~~~~  155 (269)
                      +++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+ ++++.....   |-.+  .++..+.+.   +.. + 
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~-g-   79 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASIGKKARAIAADISD--PGSVKALFAEIQALT-G-   79 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEECCCCTTC--HHHHHHHHHHHHHHH-S-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHHHHHC-C-
Confidence            5789999986 8999999999999999 999999998776654 335533222   2222  122222222   222 2 


Q ss_pred             CccEEEEccCC
Q 024295          156 GVDYCFECTGV  166 (269)
Q Consensus       156 ~~d~v~d~~g~  166 (269)
                      ++|++++++|.
T Consensus        80 ~id~lv~nAg~   90 (247)
T 3rwb_A           80 GIDILVNNASI   90 (247)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=97.13  E-value=0.0029  Score=49.87  Aligned_cols=95  Identities=17%  Similarity=0.112  Sum_probs=65.6

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      .++++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++. . .++.      .+..+.+....+ ..||+|
T Consensus        38 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~gvD~s~~~~~~a~~~-~-~~~~------~d~~~~~~~~~~-~~fD~i  105 (240)
T 3dli_A           38 YFKGCRRVLDIGCGR-GEFLELCKEE-GI-ESIGVDINEDMIKFCEGK-F-NVVK------SDAIEYLKSLPD-KYLDGV  105 (240)
T ss_dssp             GTTTCSCEEEETCTT-THHHHHHHHH-TC-CEEEECSCHHHHHHHHTT-S-EEEC------SCHHHHHHTSCT-TCBSEE
T ss_pred             hhcCCCeEEEEeCCC-CHHHHHHHhC-CC-cEEEEECCHHHHHHHHhh-c-ceee------ccHHHHhhhcCC-CCeeEE
Confidence            356789999999875 6666667665 77 899999999988888776 2 2222      333333323333 389999


Q ss_pred             EEcc-----CC---hhHHHHHHHHcccCCcEEEEEc
Q 024295          161 FECT-----GV---PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       161 ~d~~-----g~---~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +-.-     ..   ...+..+.+.+++| |.++...
T Consensus       106 ~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  140 (240)
T 3dli_A          106 MISHFVEHLDPERLFELLSLCYSKMKYS-SYIVIES  140 (240)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHHBCTT-CCEEEEE
T ss_pred             EECCchhhCCcHHHHHHHHHHHHHcCCC-cEEEEEe
Confidence            7532     22   24678889999996 9987754

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=97.13  E-value=0.0035  Score=51.67  Aligned_cols=89  Identities=22%  Similarity=0.318  Sum_probs=66.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+++|.|+|.|.+|...++.++..|. +|++.++++++ +.+.+.|+...         ++.+.+.      ..|+|+.+
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~~---------~l~ell~------~aDvV~l~  203 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE-ERAKEVNGKFV---------DLETLLK------ESDVVTIH  203 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHTTCEEC---------CHHHHHH------HCSEEEEC
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh-hhHhhcCcccc---------CHHHHHh------hCCEEEEe
Confidence            47899999999999999999999999 99999998776 55667776421         1222222      57999988


Q ss_pred             cCChh----HH-HHHHHHcccCCcEEEEEccC
Q 024295          164 TGVPS----LL-SEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       164 ~g~~~----~~-~~~~~~l~~~~G~~v~~g~~  190 (269)
                      +...+    .+ ...+..++++ +.++.++..
T Consensus       204 ~p~~~~t~~li~~~~l~~mk~g-a~lin~arg  234 (307)
T 1wwk_A          204 VPLVESTYHLINEERLKLMKKT-AILINTSRG  234 (307)
T ss_dssp             CCCSTTTTTCBCHHHHHHSCTT-CEEEECSCG
T ss_pred             cCCChHHhhhcCHHHHhcCCCC-eEEEECCCC
Confidence            75422    12 3567889996 888888753

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.12  E-value=0.0031  Score=50.35  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=31.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      +.+|+|+|+|++|..+++.+...|..+++.++++.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            57899999999999999999999988999999876

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.12  E-value=0.0022  Score=51.38  Aligned_cols=80  Identities=20%  Similarity=0.216  Sum_probs=52.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C-----C-Ccee--eCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F-----G-MTDF--INPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~-----g-~~~v--~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+ +     + ....  .|-.+  ++.+.+.+.+...
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   82 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIRE--PGDIDRLFEKARD   82 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCC--HHHHHHHHHHHHH
Confidence            4688999986 8999999998888999 99999998876554322 2     2 1112  23332  2233333433333


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      ..++|++++++|.
T Consensus        83 ~~gid~lv~~Ag~   95 (260)
T 2z1n_A           83 LGGADILVYSTGG   95 (260)
T ss_dssp             TTCCSEEEECCCC
T ss_pred             hcCCCEEEECCCC
Confidence            3249999999873

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.12  E-value=0.00058  Score=56.61  Aligned_cols=104  Identities=23%  Similarity=0.178  Sum_probs=69.0

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHh
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKG  150 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~  150 (269)
                      +.....++++++||.+|+|. |..+..+++..+. .+|++++.+++..+.+++    .|...+ ....   .+..+..  
T Consensus        67 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v-~~~~---~d~~~~~--  139 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENV-IFVC---GDGYYGV--  139 (317)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSE-EEEE---SCGGGCC--
T ss_pred             HHHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCe-EEEE---CChhhcc--
Confidence            44567888999999999987 8888888887542 379999999988887765    343221 1111   1111111  


Q ss_pred             hhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEc
Q 024295          151 ITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       151 ~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                       .....||+|+...........+.+.|++| |+++..-
T Consensus       140 -~~~~~fD~Iv~~~~~~~~~~~~~~~Lkpg-G~lvi~~  175 (317)
T 1dl5_A          140 -PEFSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVPI  175 (317)
T ss_dssp             -GGGCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEEEB
T ss_pred             -ccCCCeEEEEEcCCHHHHHHHHHHhcCCC-cEEEEEE
Confidence             11237999987654333346788899996 9887763

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.11  E-value=0.0024  Score=55.82  Aligned_cols=92  Identities=20%  Similarity=0.209  Sum_probs=67.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      -.+++|.|+|.|.+|..+++.++..|+ +|+++++++.+...+...|...         .++.+.+    .  ..|+|+-
T Consensus       275 L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~a~~~G~~~---------~~l~ell----~--~aDiVi~  338 (494)
T 3d64_A          275 IAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQAAMEGYRV---------VTMEYAA----D--KADIFVT  338 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHHHHTTTCEE---------CCHHHHT----T--TCSEEEE
T ss_pred             cCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHHHHHcCCEe---------CCHHHHH----h--cCCEEEE
Confidence            468999999999999999999999999 9999999887653444455431         1222222    1  6899999


Q ss_pred             ccCChhHH-HHHHHHcccCCcEEEEEccCC
Q 024295          163 CTGVPSLL-SEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       163 ~~g~~~~~-~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      +++....+ ...+..++++ ..++.++...
T Consensus       339 ~~~t~~lI~~~~l~~MK~g-AilINvgrg~  367 (494)
T 3d64_A          339 ATGNYHVINHDHMKAMRHN-AIVCNIGHFD  367 (494)
T ss_dssp             CSSSSCSBCHHHHHHCCTT-EEEEECSSSS
T ss_pred             CCCcccccCHHHHhhCCCC-cEEEEcCCCc
Confidence            88654333 4678889996 8888887643

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.10  E-value=0.0051  Score=50.30  Aligned_cols=86  Identities=20%  Similarity=0.226  Sum_probs=61.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  166 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  166 (269)
                      +|.|+|+|.+|...+..+...|. +|++.++++++.+.+++.|... .       .+..+.+.      +.|+|+.|+..
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~-~-------~~~~~~~~------~~D~vi~~v~~   71 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAET-A-------STAKAIAE------QCDVIITMLPN   71 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE-C-------SSHHHHHH------HCSEEEECCSS
T ss_pred             eEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCee-c-------CCHHHHHh------CCCEEEEECCC
Confidence            68999999999998888888898 8999999998888887776432 1       22333332      57999999986


Q ss_pred             hhHHHHHH-------HHcccCCcEEEEEc
Q 024295          167 PSLLSEAL-------ETTKVGKGKVIVIG  188 (269)
Q Consensus       167 ~~~~~~~~-------~~l~~~~G~~v~~g  188 (269)
                      +..+...+       ..++++ ..++.++
T Consensus        72 ~~~~~~~~~~~~~l~~~l~~~-~~vv~~s   99 (299)
T 1vpd_A           72 SPHVKEVALGENGIIEGAKPG-TVLIDMS   99 (299)
T ss_dssp             HHHHHHHHHSTTCHHHHCCTT-CEEEECS
T ss_pred             HHHHHHHHhCcchHhhcCCCC-CEEEECC
Confidence            65555554       456664 5666554

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.09  E-value=0.0066  Score=50.03  Aligned_cols=74  Identities=20%  Similarity=0.229  Sum_probs=55.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      .+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|....        .+..+.+.      ..|+||-++.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~--------~~~~~~~~------~aDvvi~~vp   86 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEHGASVC--------ESPAEVIK------KCKYTIAMLS   86 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEEC--------SSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCeEc--------CCHHHHHH------hCCEEEEEcC
Confidence            579999999999999988888899 99999999999998888775421        22333332      4688888887


Q ss_pred             ChhHHHHHH
Q 024295          166 VPSLLSEAL  174 (269)
Q Consensus       166 ~~~~~~~~~  174 (269)
                      .+..+...+
T Consensus        87 ~~~~~~~v~   95 (310)
T 3doj_A           87 DPCAALSVV   95 (310)
T ss_dssp             SHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            654555444

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=97.09  E-value=0.0034  Score=48.27  Aligned_cols=47  Identities=17%  Similarity=0.080  Sum_probs=39.3

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA  127 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~  127 (269)
                      ....+.++.+||.+|+|. |..+..+++. |+ +|+++|.+++..+.+++
T Consensus        16 ~~l~~~~~~~vLD~GCG~-G~~~~~la~~-g~-~V~gvD~S~~~l~~a~~   62 (203)
T 1pjz_A           16 SSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFT   62 (203)
T ss_dssp             HHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHH
T ss_pred             HhcccCCCCEEEEeCCCC-cHhHHHHHHC-CC-eEEEEeCCHHHHHHHHH
Confidence            344667889999999986 8888888886 88 99999999988888765

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=97.09  E-value=0.004  Score=51.45  Aligned_cols=89  Identities=19%  Similarity=0.227  Sum_probs=65.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+++|.|+|.|.+|...++.++..|. +|++.++++++. .+++.|+..         .++.+.+.      ..|+|+.+
T Consensus       141 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~~---------~~l~ell~------~aDvVvl~  203 (313)
T 2ekl_A          141 AGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE-KAEKINAKA---------VSLEELLK------NSDVISLH  203 (313)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH-HHHHTTCEE---------CCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh-HHHhcCcee---------cCHHHHHh------hCCEEEEe
Confidence            57899999999999999999999999 999999887764 456677542         11222222      57999988


Q ss_pred             cCChhH----H-HHHHHHcccCCcEEEEEccC
Q 024295          164 TGVPSL----L-SEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       164 ~g~~~~----~-~~~~~~l~~~~G~~v~~g~~  190 (269)
                      +...+.    + ...+..++++ +.++.++..
T Consensus       204 ~P~~~~t~~li~~~~l~~mk~g-a~lIn~arg  234 (313)
T 2ekl_A          204 VTVSKDAKPIIDYPQFELMKDN-VIIVNTSRA  234 (313)
T ss_dssp             CCCCTTSCCSBCHHHHHHSCTT-EEEEESSCG
T ss_pred             ccCChHHHHhhCHHHHhcCCCC-CEEEECCCC
Confidence            864321    2 4667889996 888888753

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.08  E-value=0.0029  Score=50.03  Aligned_cols=104  Identities=20%  Similarity=0.132  Sum_probs=67.7

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhh--
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGIT--  152 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~--  152 (269)
                      ....+.++||.+|+|. |..+..+++.+. ..++++++.+++..+.+++    .|...-+....   .+..+.+..+.  
T Consensus        66 ~~~~~~~~VLeiG~G~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~---gda~~~l~~l~~~  141 (237)
T 3c3y_A           66 LKLVNAKKTIEVGVFT-GYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIE---SDAMLALDNLLQG  141 (237)
T ss_dssp             HHHTTCCEEEEECCTT-SHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHHS
T ss_pred             HHhhCCCEEEEeCCCC-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHHhc
Confidence            3445678999999876 888889999863 2399999999988877764    35422111111   33434333331  


Q ss_pred             --CCCCccEEEEccCC---hhHHHHHHHHcccCCcEEEEEc
Q 024295          153 --HGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       153 --~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                        ....||+||-....   ...++.+.+.+++| |.++.-.
T Consensus       142 ~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pG-G~lv~d~  181 (237)
T 3c3y_A          142 QESEGSYDFGFVDADKPNYIKYHERLMKLVKVG-GIVAYDN  181 (237)
T ss_dssp             TTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             cCCCCCcCEEEECCchHHHHHHHHHHHHhcCCC-eEEEEec
Confidence              12379999843322   33578889999996 9887643

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.08  E-value=0.007  Score=50.11  Aligned_cols=88  Identities=16%  Similarity=0.231  Sum_probs=62.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      ..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|....        .+..+.+.      ..|+||-++
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~--------~~~~e~~~------~aDvVi~~v   95 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLAALGATIH--------EQARAAAR------DADIVVSML   95 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCEEE--------SSHHHHHT------TCSEEEECC
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHCCCEee--------CCHHHHHh------cCCEEEEEC
Confidence            4589999999999999888888899 99999999999888877765321        22222221      578888888


Q ss_pred             CChhHHHHHH------HHcccCCcEEEEEc
Q 024295          165 GVPSLLSEAL------ETTKVGKGKVIVIG  188 (269)
Q Consensus       165 g~~~~~~~~~------~~l~~~~G~~v~~g  188 (269)
                      ..+..+...+      ..++++ ..++..+
T Consensus        96 p~~~~~~~v~~~~~~~~~l~~~-~~vi~~s  124 (320)
T 4dll_A           96 ENGAVVQDVLFAQGVAAAMKPG-SLFLDMA  124 (320)
T ss_dssp             SSHHHHHHHHTTTCHHHHCCTT-CEEEECS
T ss_pred             CCHHHHHHHHcchhHHhhCCCC-CEEEecC
Confidence            7654544444      245563 5555554

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.08  E-value=0.00033  Score=58.58  Aligned_cols=105  Identities=20%  Similarity=0.159  Sum_probs=68.4

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhC----C-------------CceeeCCC
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKAF----G-------------MTDFINPD  137 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~~----g-------------~~~v~~~~  137 (269)
                      +.....+.++++||.+|+|+ |..+..+++..|. .+|++++.+++..+.+++.    +             .-.++..+
T Consensus        97 ~l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d  175 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD  175 (336)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred             HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECC
Confidence            34556788999999999987 8888889998764 4999999999887777652    1             11122111


Q ss_pred             CCCCccHHHHHHhhhCCCCccEEEEccCCh-hHHHHHHHHcccCCcEEEEEcc
Q 024295          138 DEPNKSISELVKGITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       138 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      -   .+.   ...+.++ .||+|+-....+ ..+..+.+.|++| |+++.+..
T Consensus       176 ~---~~~---~~~~~~~-~fD~V~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~  220 (336)
T 2b25_A          176 I---SGA---TEDIKSL-TFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYVV  220 (336)
T ss_dssp             T---TCC---C--------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEES
T ss_pred             h---HHc---ccccCCC-CeeEEEECCCCHHHHHHHHHHhcCCC-cEEEEEeC
Confidence            1   111   0011122 699888554433 3578899999996 99987653

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.06  E-value=0.0026  Score=52.41  Aligned_cols=41  Identities=20%  Similarity=0.259  Sum_probs=35.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC---cchHHH
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN---PWKKEK  124 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~---~~~~~~  124 (269)
                      .++++||+|+|++|.+++..+...|+++|+++.|+   .++.+.
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~  190 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVA  190 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHH
Confidence            57899999999999999999999999899999999   444443

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.06  E-value=0.0042  Score=50.38  Aligned_cols=96  Identities=13%  Similarity=0.038  Sum_probs=62.4

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCCCcee-eCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           87 SVAVLGL-GTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      +|||+|+ |.+|...++.+... |. +|++++|++++...+...+...+ .|..+   .+   .+.+...  ++|+||.+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~-~V~~~~R~~~~~~~~~~~~v~~~~~D~~d---~~---~l~~~~~--~~d~vi~~   72 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHID-HFHIGVRNVEKVPDDWRGKVSVRQLDYFN---QE---SMVEAFK--GMDTVVFI   72 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCT-TEEEEESSGGGSCGGGBTTBEEEECCTTC---HH---HHHHHTT--TCSEEEEC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCC-cEEEEECCHHHHHHhhhCCCEEEEcCCCC---HH---HHHHHHh--CCCEEEEe
Confidence            5899996 99999998888777 88 99999998877655544454432 23322   22   2333332  78999999


Q ss_pred             cCCh-------hHHHHHHHHcccC-CcEEEEEccCC
Q 024295          164 TGVP-------SLLSEALETTKVG-KGKVIVIGVGV  191 (269)
Q Consensus       164 ~g~~-------~~~~~~~~~l~~~-~G~~v~~g~~~  191 (269)
                      ++..       .....+++.++.. -++++.++...
T Consensus        73 a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           73 PSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             CCCCccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence            8742       1234555555542 14788887654

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.06  E-value=0.0016  Score=53.50  Aligned_cols=73  Identities=18%  Similarity=0.131  Sum_probs=53.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCc--eeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMT--DFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      ++++++|+|+|++|.+++..+...|+++|++.+|++++.+.+ ++++..  .++        ++ +.+.+..  .++|+|
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~--------~~-~~~~~~~--~~aDiv  208 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYF--------SL-AEAETRL--AEYDII  208 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEE--------CH-HHHHHTG--GGCSEE
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCcee--------eH-HHHHhhh--ccCCEE
Confidence            578999999999999999999999988999999998886554 456542  122        11 1233322  278999


Q ss_pred             EEccCCh
Q 024295          161 FECTGVP  167 (269)
Q Consensus       161 ~d~~g~~  167 (269)
                      ++|++..
T Consensus       209 In~t~~~  215 (297)
T 2egg_A          209 INTTSVG  215 (297)
T ss_dssp             EECSCTT
T ss_pred             EECCCCC
Confidence            9999754

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.06  E-value=0.00015  Score=56.88  Aligned_cols=101  Identities=18%  Similarity=0.087  Sum_probs=67.7

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcC-----CCeEEEEcCCcchHHHHHhC----C-------CceeeCCCCCCCccH
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHG-----AAKIIGIDKNPWKKEKGKAF----G-------MTDFINPDDEPNKSI  144 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g-----~~~v~~~~~~~~~~~~~~~~----g-------~~~v~~~~~~~~~~~  144 (269)
                      .++++.+||.+|+|. |..+..+++..+     ..+|++++.+++..+.+++.    +       .-.++..+-  ...+
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~--~~~~  153 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI--YQVN  153 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG--GGCC
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh--Hhcc
Confidence            578899999999987 888999999876     13999999999887777652    2       112222111  0111


Q ss_pred             HHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEc
Q 024295          145 SELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       145 ~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .+...  ..+ .||+|+........+..+.+.++++ |+++..-
T Consensus       154 ~~~~~--~~~-~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lv~~~  193 (227)
T 2pbf_A          154 EEEKK--ELG-LFDAIHVGASASELPEILVDLLAEN-GKLIIPI  193 (227)
T ss_dssp             HHHHH--HHC-CEEEEEECSBBSSCCHHHHHHEEEE-EEEEEEE
T ss_pred             cccCc--cCC-CcCEEEECCchHHHHHHHHHhcCCC-cEEEEEE
Confidence            10001  112 7999987665554668889999996 9887763

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=97.05  E-value=0.0026  Score=52.48  Aligned_cols=100  Identities=17%  Similarity=0.194  Sum_probs=68.7

Q ss_pred             HhcC-CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccHHHHHH
Q 024295           78 KEAK-VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSISELVK  149 (269)
Q Consensus        78 ~~~~-~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~  149 (269)
                      .... ++++.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++    .|..   .++..+-   .++     
T Consensus       110 ~~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~-----  179 (312)
T 3vc1_A          110 DHLGQAGPDDTLVDAGCGR-GGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM---LDT-----  179 (312)
T ss_dssp             TTSCCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSC-----
T ss_pred             HHhccCCCCCEEEEecCCC-CHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh---hcC-----
Confidence            3344 78899999999986 8888888888787 99999999988877765    3321   1221111   110     


Q ss_pred             hhhCCCCccEEEEc-----cCChhHHHHHHHHcccCCcEEEEEcc
Q 024295          150 GITHGMGVDYCFEC-----TGVPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       150 ~~~~~~~~d~v~d~-----~g~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      .+ ....||+|+..     .+....+..+.+.|++| |+++....
T Consensus       180 ~~-~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  222 (312)
T 3vc1_A          180 PF-DKGAVTASWNNESTMYVDLHDLFSEHSRFLKVG-GRYVTITG  222 (312)
T ss_dssp             CC-CTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CC-CCCCEeEEEECCchhhCCHHHHHHHHHHHcCCC-cEEEEEEc
Confidence            01 22389999753     23345688999999996 99987753

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.05  E-value=0.0029  Score=50.23  Aligned_cols=80  Identities=16%  Similarity=0.194  Sum_probs=52.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCcee-eCCCCCCCccHHHHHHhhhC-CCCccE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMTDF-INPDDEPNKSISELVKGITH-GMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~~v-~~~~~~~~~~~~~~i~~~~~-~~~~d~  159 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. +++...+ .|-.+  .+.+.+.+.+... -.++|+
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~id~   80 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD--PASVERGFAEALAHLGRLDG   80 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC--HHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCEEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            4678999986 8999999998888999 9999999887766553 3453322 23332  1222222322211 027999


Q ss_pred             EEEccCC
Q 024295          160 CFECTGV  166 (269)
Q Consensus       160 v~d~~g~  166 (269)
                      +++++|.
T Consensus        81 lvn~Ag~   87 (245)
T 1uls_A           81 VVHYAGI   87 (245)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999873

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.05  E-value=0.0068  Score=48.46  Aligned_cols=78  Identities=10%  Similarity=0.262  Sum_probs=51.7

Q ss_pred             CCCeEEEEcC-C--hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCC-c-ee--eCCCCCCCccHHHHHH---
Q 024295           84 KGSSVAVLGL-G--TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGM-T-DF--INPDDEPNKSISELVK---  149 (269)
Q Consensus        84 ~~~~vlI~G~-g--~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~-~-~v--~~~~~~~~~~~~~~i~---  149 (269)
                      +|+++||+|+ |  ++|.+.++.+...|+ +|+.++++++..+.+.    +.+. . +.  .|-.+  +++..+.+.   
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   81 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQS--DEEVINGFEQIG   81 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTC--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCC--HHHHHHHHHHHH
Confidence            5899999995 4  799999998889999 9999999987766543    3332 1 22  23322  122322222   


Q ss_pred             hhhCCCCccEEEEccCC
Q 024295          150 GITHGMGVDYCFECTGV  166 (269)
Q Consensus       150 ~~~~~~~~d~v~d~~g~  166 (269)
                      +.. + .+|++++++|.
T Consensus        82 ~~~-G-~iD~lvnnAg~   96 (256)
T 4fs3_A           82 KDV-G-NIDGVYHSIAF   96 (256)
T ss_dssp             HHH-C-CCSEEEECCCC
T ss_pred             HHh-C-CCCEEEecccc
Confidence            222 3 79999998863

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.04  E-value=0.0031  Score=50.41  Aligned_cols=77  Identities=14%  Similarity=0.217  Sum_probs=53.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce---eeCCCCCCCccHHHHHH---hhh
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD---FINPDDEPNKSISELVK---GIT  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~---~~~  152 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.|...   ..|-.+  +++..+.+.   +..
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSK--KKDVEEFVRRTFETY   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            6899999986 8999999998889999 999999998776654    3355432   223322  122322222   222


Q ss_pred             CCCCccEEEEccC
Q 024295          153 HGMGVDYCFECTG  165 (269)
Q Consensus       153 ~~~~~d~v~d~~g  165 (269)
                       + ++|++++++|
T Consensus        83 -G-~iDiLVNNAG   93 (254)
T 4fn4_A           83 -S-RIDVLCNNAG   93 (254)
T ss_dssp             -S-CCCEEEECCC
T ss_pred             -C-CCCEEEECCc
Confidence             3 7999999987

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.03  E-value=0.0054  Score=50.10  Aligned_cols=104  Identities=17%  Similarity=0.220  Sum_probs=64.2

Q ss_pred             CCCeEEEEcC-Ch--hHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceee--CCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GT--VGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFI--NPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~--~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~--~~~~~~~~~~~~~i~~~~~-  153 (269)
                      +++++||+|+ |.  +|.+.++.+...|+ +|+.++++++..+.+++    .+....+  |-.+  .+...+.+.+... 
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  106 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELGAFVAGHCDVAD--AASIDAVFETLEKK  106 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCC--HHHHHHHHHHHHHh
Confidence            5789999985 55  99999998888999 89999988654443332    3422222  3322  1222222222211 


Q ss_pred             CCCccEEEEccCChh-----------------------------HHHHHHHHcccCCcEEEEEccCC
Q 024295          154 GMGVDYCFECTGVPS-----------------------------LLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       154 ~~~~d~v~d~~g~~~-----------------------------~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      -.++|++++++|...                             ..+.++..++.+ |+++.++...
T Consensus       107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~Iv~isS~~  172 (293)
T 3grk_A          107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADG-GSILTLTYYG  172 (293)
T ss_dssp             TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTC-EEEEEEECGG
T ss_pred             cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CEEEEEeehh
Confidence            127999999987421                             133445566675 9999987654

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.03  E-value=0.0027  Score=49.82  Aligned_cols=76  Identities=9%  Similarity=-0.026  Sum_probs=50.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCC--c-eeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGM--T-DFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~--~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      +++||+|+ |++|.+.+..+...|+ +|+.+++++++.+.+.+ ++.  . ...|-.+   .+..+.+.+.... .+|++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~~~~-~~d~l   76 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTNCLSNNVGYRARDLAS---HQEVEQLFEQLDS-IPSTV   76 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTCSSCCCEEECCTTC---HHHHHHHHHSCSS-CCSEE
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhccCeEeecCCC---HHHHHHHHHHHhh-cCCEE
Confidence            46899986 8999999999888999 89999999888776644 432  1 1223332   3333333333333 45999


Q ss_pred             EEccCC
Q 024295          161 FECTGV  166 (269)
Q Consensus       161 ~d~~g~  166 (269)
                      ++++|.
T Consensus        77 v~~Ag~   82 (230)
T 3guy_A           77 VHSAGS   82 (230)
T ss_dssp             EECCCC
T ss_pred             EEeCCc
Confidence            999873

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.02  E-value=0.0056  Score=50.05  Aligned_cols=80  Identities=14%  Similarity=0.273  Sum_probs=51.0

Q ss_pred             CCCeEEEEcC-C--hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceee--CCCCCCCccHHHHHHhhhCC
Q 024295           84 KGSSVAVLGL-G--TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFI--NPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        84 ~~~~vlI~G~-g--~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~--~~~~~~~~~~~~~i~~~~~~  154 (269)
                      .++++||+|+ |  ++|.+.++.+...|+ +|+.++++++..+.+++    .+....+  |-.+  .++..+.+.+....
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  105 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSD--AESVDNMFKVLAEE  105 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5789999986 5  899999888888999 89999998765544432    3432222  3322  12232223222110


Q ss_pred             -CCccEEEEccCC
Q 024295          155 -MGVDYCFECTGV  166 (269)
Q Consensus       155 -~~~d~v~d~~g~  166 (269)
                       .++|++++++|.
T Consensus       106 ~g~iD~lVnnAG~  118 (296)
T 3k31_A          106 WGSLDFVVHAVAF  118 (296)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence             279999999874

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.02  E-value=0.0035  Score=52.81  Aligned_cols=132  Identities=18%  Similarity=0.184  Sum_probs=82.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHc-CCCeEEE-EcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           86 SSVAVLGLGTVGLGAVDGARMH-GAAKIIG-IDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~-g~~~v~~-~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      -+|.|+|+|.+|...+..++.. ++ ++++ .++++++.+.++++|.. ++       .++.+.+.    ...+|+|+.|
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~a~~~g~~-~~-------~~~~~ll~----~~~~D~V~i~   72 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNL-EVHGVFDILAEKREAAAQKGLK-IY-------ESYEAVLA----DEKVDAVLIA   72 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTE-EEEEEECSSHHHHHHHHTTTCC-BC-------SCHHHHHH----CTTCCEEEEC
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCc-EEEEEEcCCHHHHHHHHhcCCc-ee-------CCHHHHhc----CCCCCEEEEc
Confidence            3689999999998777776665 66 6655 47777887777777753 22       33444443    2379999999


Q ss_pred             cCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          164 TGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       164 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      +....+.+.+..++..  |+-|++..+.. ...-....+.    .++..+.-...  +.....+..+.+++++|.+
T Consensus        73 tp~~~h~~~~~~al~a--GkhVl~EKP~a-~~~~ea~~l~~~a~~~g~~~~v~~~--~r~~p~~~~~k~~i~~g~i  143 (359)
T 3e18_A           73 TPNDSHKELAISALEA--GKHVVCEKPVT-MTSEDLLAIMDVAKRVNKHFMVHQN--RRWDEDFLIIKEMFEQKTI  143 (359)
T ss_dssp             SCGGGHHHHHHHHHHT--TCEEEEESSCC-SSHHHHHHHHHHHHHHTCCEEEECG--GGGCHHHHHHHHHHHHTTT
T ss_pred             CCcHHHHHHHHHHHHC--CCCEEeeCCCc-CCHHHHHHHHHHHHHhCCeEEEEee--eccCHHHHHHHHHHHcCCC
Confidence            9887788888888877  56677765432 1111111121    23443322211  1122457788888988875

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=97.01  E-value=0.0029  Score=55.15  Aligned_cols=91  Identities=25%  Similarity=0.325  Sum_probs=67.0

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      -.+++|.|+|.|.+|..+++.++..|+ +|+++++++.+...+...|.. +        .++.+.+      ...|+|+-
T Consensus       255 l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~a~~~g~~-~--------~~l~ell------~~aDiVi~  318 (479)
T 1v8b_A          255 ISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFN-V--------VTLDEIV------DKGDFFIT  318 (479)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCE-E--------CCHHHHT------TTCSEEEE
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHHHHHcCCE-e--------cCHHHHH------hcCCEEEE
Confidence            478999999999999999999999999 999999988765445555542 1        1222222      16799998


Q ss_pred             ccCChhHH-HHHHHHcccCCcEEEEEccC
Q 024295          163 CTGVPSLL-SEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       163 ~~g~~~~~-~~~~~~l~~~~G~~v~~g~~  190 (269)
                      +++....+ ...+..++++ ..++.+|..
T Consensus       319 ~~~t~~lI~~~~l~~MK~g-ailiNvgrg  346 (479)
T 1v8b_A          319 CTGNVDVIKLEHLLKMKNN-AVVGNIGHF  346 (479)
T ss_dssp             CCSSSSSBCHHHHTTCCTT-CEEEECSST
T ss_pred             CCChhhhcCHHHHhhcCCC-cEEEEeCCC
Confidence            87654333 3677888996 888888754

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.01  E-value=0.0027  Score=50.70  Aligned_cols=78  Identities=24%  Similarity=0.308  Sum_probs=51.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee--CCCCCCCccHHHHHHhhh--CCCCcc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI--NPDDEPNKSISELVKGIT--HGMGVD  158 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~~i~~~~--~~~~~d  158 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+..++++. ..+  |-.+  .+++.+.+.+..  -+ ++|
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~D~~~--~~~~~~~~~~~~~~~g-~iD   79 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGG-AFFQVDLED--ERERVRFVEEAAYALG-RVD   79 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTC-EEEECCTTC--HHHHHHHHHHHHHHHS-CCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHhhC-CEEEeeCCC--HHHHHHHHHHHHHHcC-CCC
Confidence            4688999986 8999999998888999 99999998877333444432 222  3222  122333333221  12 799


Q ss_pred             EEEEccCC
Q 024295          159 YCFECTGV  166 (269)
Q Consensus       159 ~v~d~~g~  166 (269)
                      ++++++|.
T Consensus        80 ~lv~~Ag~   87 (256)
T 2d1y_A           80 VLVNNAAI   87 (256)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999873

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.01  E-value=0.0035  Score=51.75  Aligned_cols=74  Identities=15%  Similarity=0.201  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC---cchHHHHH-h----CCCc-eeeCCCCCCCccHHHHHHhhhCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN---PWKKEKGK-A----FGMT-DFINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~---~~~~~~~~-~----~g~~-~v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      .++++||+|+|++|.+++..+...|+++|+++.|+   .++.+.+. +    .+.. .+++..+  .+++.+.+.     
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~--~~~l~~~l~-----  225 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIED--HEQLRKEIA-----  225 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC--HHHHHHHHH-----
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccch--HHHHHhhhc-----
Confidence            57899999999999999999999999889999998   55554432 2    2221 2333321  011222221     


Q ss_pred             CCccEEEEccC
Q 024295          155 MGVDYCFECTG  165 (269)
Q Consensus       155 ~~~d~v~d~~g  165 (269)
                       .+|+|++|++
T Consensus       226 -~aDiIINaTp  235 (315)
T 3tnl_A          226 -ESVIFTNATG  235 (315)
T ss_dssp             -TCSEEEECSS
T ss_pred             -CCCEEEECcc
Confidence             6899999985

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.01  E-value=0.0048  Score=49.34  Aligned_cols=82  Identities=20%  Similarity=0.254  Sum_probs=54.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCceeeCCCCCCCc-cHHHHHHhhhC-CCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTDFINPDDEPNK-SISELVKGITH-GMG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v~~~~~~~~~-~~~~~i~~~~~-~~~  156 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.|.+...-.-+-++. +..+.+.+... -.+
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   86 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIH   86 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            6889999986 8999999999999999 999999998766543    33454322211111113 33333333321 127


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|++++++|.
T Consensus        87 iDiLVNNAG~   96 (255)
T 4g81_D           87 VDILINNAGI   96 (255)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999875

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.00  E-value=0.0015  Score=51.24  Aligned_cols=96  Identities=19%  Similarity=0.235  Sum_probs=66.4

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCC------CeEEEEcCCcchHHHHHhC----C-------CceeeCCCCCCCcc
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGA------AKIIGIDKNPWKKEKGKAF----G-------MTDFINPDDEPNKS  143 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~------~~v~~~~~~~~~~~~~~~~----g-------~~~v~~~~~~~~~~  143 (269)
                      .++++.+||.+|+|. |..+..+++..+.      .+|++++.+++..+.+++.    +       .-.++..      +
T Consensus        81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~------d  153 (227)
T 1r18_A           81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG------D  153 (227)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES------C
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC------C
Confidence            578899999999987 8888888887663      3899999998877776542    1       1122211      1


Q ss_pred             HHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295          144 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       144 ~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      ..+   .+.....||+|+...........+.+.|++| |+++..
T Consensus       154 ~~~---~~~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lvi~  193 (227)
T 1r18_A          154 GRK---GYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVP  193 (227)
T ss_dssp             GGG---CCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             ccc---CCCcCCCccEEEECCchHHHHHHHHHHhcCC-CEEEEE
Confidence            111   1112137999987766554568889999996 988765

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=97.00  E-value=0.0039  Score=52.30  Aligned_cols=91  Identities=16%  Similarity=0.233  Sum_probs=66.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .|++|.|+|.|.+|...++.++..|. +|++.++++...+.+++.|...+        .++.+.+.      ..|+|+-+
T Consensus       163 ~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~l~ell~------~aDvV~l~  227 (351)
T 3jtm_A          163 EGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEKETGAKFV--------EDLNEMLP------KCDVIVIN  227 (351)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSCCCHHHHHHHCCEEC--------SCHHHHGG------GCSEEEEC
T ss_pred             cCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCccCHHHHHhCCCeEc--------CCHHHHHh------cCCEEEEC
Confidence            57899999999999999999999999 89999988777777777775432        22322222      57888887


Q ss_pred             cCCh-h----HHHHHHHHcccCCcEEEEEccC
Q 024295          164 TGVP-S----LLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       164 ~g~~-~----~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      +... .    .-...+..++++ ..++.++..
T Consensus       228 ~Plt~~t~~li~~~~l~~mk~g-ailIN~aRG  258 (351)
T 3jtm_A          228 MPLTEKTRGMFNKELIGKLKKG-VLIVNNARG  258 (351)
T ss_dssp             SCCCTTTTTCBSHHHHHHSCTT-EEEEECSCG
T ss_pred             CCCCHHHHHhhcHHHHhcCCCC-CEEEECcCc
Confidence            7531 1    125667788885 888877643

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=96.99  E-value=0.002  Score=50.53  Aligned_cols=101  Identities=21%  Similarity=0.209  Sum_probs=68.4

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHhh
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      +.....+.++.+||.+|+|. |..+..+++.. . +|++++.+++..+.+++.    +...++..      +..+   ..
T Consensus        62 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~-~-~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~------d~~~---~~  129 (231)
T 1vbf_A           62 MLDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASKLLSYYNNIKLILG------DGTL---GY  129 (231)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHHHHTTCSSEEEEES------CGGG---CC
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHHc-C-EEEEEeCCHHHHHHHHHHHhhcCCeEEEEC------Cccc---cc
Confidence            44556788999999999986 88888888874 5 999999999888888763    21122221      1111   01


Q ss_pred             hCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEcc
Q 024295          152 THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      .....||+|+....-......+.+.+++| |+++..-.
T Consensus       130 ~~~~~fD~v~~~~~~~~~~~~~~~~L~pg-G~l~~~~~  166 (231)
T 1vbf_A          130 EEEKPYDRVVVWATAPTLLCKPYEQLKEG-GIMILPIG  166 (231)
T ss_dssp             GGGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEEC
T ss_pred             ccCCCccEEEECCcHHHHHHHHHHHcCCC-cEEEEEEc
Confidence            11237999986554333446788999996 98877643

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=96.99  E-value=0.0021  Score=52.02  Aligned_cols=101  Identities=10%  Similarity=0.046  Sum_probs=68.2

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHhC-----CCc--eeeCCCCCCCccHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMH--GAAKIIGIDKNPWKKEKGKAF-----GMT--DFINPDDEPNKSISE  146 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~--g~~~v~~~~~~~~~~~~~~~~-----g~~--~v~~~~~~~~~~~~~  146 (269)
                      +.....++++.+||.+|+|. |..+..+++..  +. +|++++.+++..+.+++.     |.+  .++..      ++.+
T Consensus       102 ~~~~~~~~~~~~VLD~G~G~-G~~~~~la~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~------d~~~  173 (275)
T 1yb2_A          102 IIMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKG-TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS------DIAD  173 (275)
T ss_dssp             ----CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSS-EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECS------CTTT
T ss_pred             HHHHcCCCCcCEEEEecCCC-CHHHHHHHHHcCCCC-EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEEC------chhc
Confidence            34556788999999999985 88888888874  44 999999999888877652     422  22221      1111


Q ss_pred             HHHhhhCCCCccEEEEccCCh-hHHHHHHHHcccCCcEEEEEcc
Q 024295          147 LVKGITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       147 ~i~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                          ...+..||+|+-....+ ..+..+.+.++++ |+++....
T Consensus       174 ----~~~~~~fD~Vi~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~  212 (275)
T 1yb2_A          174 ----FISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYLP  212 (275)
T ss_dssp             ----CCCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEES
T ss_pred             ----cCcCCCccEEEEcCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence                11223799998655433 4688899999996 99888753

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=96.98  E-value=0.0063  Score=50.53  Aligned_cols=132  Identities=14%  Similarity=0.191  Sum_probs=76.3

Q ss_pred             eEEEEcCChhHHHH-HHHHHHcCCCeEE-EEcCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           87 SVAVLGLGTVGLGA-VDGARMHGAAKII-GIDKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        87 ~vlI~G~g~~G~~a-~~la~~~g~~~v~-~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      +|.|+|+|.+|... +..++..+. +++ +.++++++.+. ++++|...++       .++.+.+    ....+|+|+.+
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~-~~vav~d~~~~~~~~~~~~~g~~~~~-------~~~~~~l----~~~~~D~V~i~   69 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGG-EVVSMMSTSAERGAAYATENGIGKSV-------TSVEELV----GDPDVDAVYVS   69 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTC-EEEEEECSCHHHHHHHHHHTTCSCCB-------SCHHHHH----TCTTCCEEEEC
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCC-eEEEEECCCHHHHHHHHHHcCCCccc-------CCHHHHh----cCCCCCEEEEe
Confidence            58899999999875 544333677 555 55777776655 4556753222       2333333    22379999999


Q ss_pred             cCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          164 TGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       164 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      +....+.+.+..+++.  |+-|++..+.... .-....+.    .++..+.-...  +.....+..+.+++.+|.+
T Consensus        70 tp~~~h~~~~~~al~~--Gk~v~~ekP~~~~-~~~~~~l~~~a~~~g~~~~~~~~--~r~~p~~~~~~~~i~~g~i  140 (332)
T 2glx_A           70 TTNELHREQTLAAIRA--GKHVLCEKPLAMT-LEDAREMVVAAREAGVVLGTNHH--LRNAAAHRAMRDAIAEGRI  140 (332)
T ss_dssp             SCGGGHHHHHHHHHHT--TCEEEECSSSCSS-HHHHHHHHHHHHHHTCCEEECCC--GGGSHHHHHHHHHHHTTTT
T ss_pred             CChhHhHHHHHHHHHC--CCeEEEeCCCcCC-HHHHHHHHHHHHHcCCEEEEeeh--hhcCHHHHHHHHHHHcCCC
Confidence            9877677777777776  5666665433210 11111121    23443322211  1122357888889998875

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=96.98  E-value=0.0025  Score=48.05  Aligned_cols=102  Identities=20%  Similarity=0.215  Sum_probs=68.6

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC-ceeeCCCCCCCccHHHHHHh
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM-TDFINPDDEPNKSISELVKG  150 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~v~~~~~~~~~~~~~~i~~  150 (269)
                      +.....+.++.+||.+|+|. |..+..+++.. . ++++++.+++..+.+++    .+. ..+ ....   .++.+.+..
T Consensus        25 ~~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~-~~~~---~d~~~~~~~   97 (192)
T 1l3i_A           25 IMCLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAISTTEMNLQRHGLGDNV-TLME---GDAPEALCK   97 (192)
T ss_dssp             HHHHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHHHHHHHHHTTCCTTE-EEEE---SCHHHHHTT
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHHHHHHHHHcCCCcce-EEEe---cCHHHhccc
Confidence            34556788999999999987 88888888766 4 99999999988877765    333 111 1111   333332221


Q ss_pred             hhCCCCccEEEEccC---ChhHHHHHHHHcccCCcEEEEEc
Q 024295          151 ITHGMGVDYCFECTG---VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       151 ~~~~~~~d~v~d~~g---~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                         ...+|+|+-...   ....+..+.+.++++ |+++...
T Consensus        98 ---~~~~D~v~~~~~~~~~~~~l~~~~~~l~~g-G~l~~~~  134 (192)
T 1l3i_A           98 ---IPDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTA  134 (192)
T ss_dssp             ---SCCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             ---CCCCCEEEECCchHHHHHHHHHHHHhcCCC-cEEEEEe
Confidence               127999986543   134577888899996 9988764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.97  E-value=0.0073  Score=49.25  Aligned_cols=104  Identities=16%  Similarity=0.150  Sum_probs=63.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcch-HHHH----HhCCCce-ee--CCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWK-KEKG----KAFGMTD-FI--NPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~-~~~~----~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~-  153 (269)
                      +++++||+|+ |++|.+.++.+...|+ +|+.+++++++ .+.+    ++.+... .+  |-.+  .+...+.+.+... 
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSD--EQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHH
Confidence            5789999986 8999999999888999 99999887653 2222    2344322 22  3322  1222222222211 


Q ss_pred             CCCccEEEEccCCh-----------h---------------HHHHHHHHcccCCcEEEEEccCC
Q 024295          154 GMGVDYCFECTGVP-----------S---------------LLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       154 ~~~~d~v~d~~g~~-----------~---------------~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      -.++|++++++|..           .               ..+.++..++.+ |+++.++...
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-g~iv~isS~~  185 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQG-DVIINTASIV  185 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTT-CEEEEECCTH
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CEEEEEechH
Confidence            12799999987631           0               123444456665 8999987543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=96.97  E-value=0.01  Score=50.66  Aligned_cols=112  Identities=18%  Similarity=0.199  Sum_probs=71.6

Q ss_pred             hhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----------CCC--c--eeeC
Q 024295           71 TGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-----------FGM--T--DFIN  135 (269)
Q Consensus        71 ~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-----------~g~--~--~v~~  135 (269)
                      ..+..+.....++++++||-+|+|. |..++++++..++++|++++.+++-.+.+++           +|.  .  .++.
T Consensus       160 ~~i~~il~~l~l~~gd~VLDLGCGt-G~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~  238 (438)
T 3uwp_A          160 DLVAQMIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER  238 (438)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEESCTT-SHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence            3344456778899999999999986 8899999998898679999998765544432           232  1  2222


Q ss_pred             CCCCCCccHHHHHHhhhCCCCccEEEE-cc--C--ChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          136 PDDEPNKSISELVKGITHGMGVDYCFE-CT--G--VPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       136 ~~~~~~~~~~~~i~~~~~~~~~d~v~d-~~--g--~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      .+- ....+.+.+     + .+|+||- +.  .  ....+.++++.|++| |+++......
T Consensus       239 GD~-~~lp~~d~~-----~-~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPG-GrIVssE~f~  291 (438)
T 3uwp_A          239 GDF-LSEEWRERI-----A-NTSVIFVNNFAFGPEVDHQLKERFANMKEG-GRIVSSKPFA  291 (438)
T ss_dssp             CCT-TSHHHHHHH-----H-TCSEEEECCTTCCHHHHHHHHHHHTTSCTT-CEEEESSCSS
T ss_pred             Ccc-cCCcccccc-----C-CccEEEEcccccCchHHHHHHHHHHcCCCC-cEEEEeeccc
Confidence            211 011221111     1 6899873 22  1  122466778899997 9999875443

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.97  E-value=0.0023  Score=50.41  Aligned_cols=97  Identities=14%  Similarity=0.103  Sum_probs=61.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhCCCcee-eCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      ++|||+|+ |.+|.+.++.+...| + +|++++|++++.+.+...+...+ .|..+   .+   .+.+...  ++|++|.
T Consensus        24 k~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d---~~---~~~~~~~--~~D~vv~   94 (236)
T 3qvo_A           24 KNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKIHKPYPTNSQIIMGDVLN---HA---ALKQAMQ--GQDIVYA   94 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGSCSSCCTTEEEEECCTTC---HH---HHHHHHT--TCSEEEE
T ss_pred             cEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhhcccccCCcEEEEecCCC---HH---HHHHHhc--CCCEEEE
Confidence            57999986 999999999998889 7 99999998776543322232222 22222   22   2333222  6899999


Q ss_pred             ccCChhH---HHHHHHHcccC-CcEEEEEccCC
Q 024295          163 CTGVPSL---LSEALETTKVG-KGKVIVIGVGV  191 (269)
Q Consensus       163 ~~g~~~~---~~~~~~~l~~~-~G~~v~~g~~~  191 (269)
                      +.+....   .+.+++.++.. .+++|.++...
T Consensus        95 ~a~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~~  127 (236)
T 3qvo_A           95 NLTGEDLDIQANSVIAAMKACDVKRLIFVLSLG  127 (236)
T ss_dssp             ECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             cCCCCchhHHHHHHHHHHHHcCCCEEEEEecce
Confidence            9876432   34455555432 26898887643

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.97  E-value=0.0024  Score=51.10  Aligned_cols=80  Identities=18%  Similarity=0.210  Sum_probs=52.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCc-ee--eCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMT-DF--INPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+. +++.. ..  .|-.+  .++..+.+.+... -.++
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   84 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIGDAALAVAADISK--EADVDAAVEAALSKFGKV   84 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTS--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEecCCC--HHHHHHHHHHHHHhcCCC
Confidence            4688999986 8999999998888999 9999999988777654 34432 12  23222  1222222322211 1279


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus        85 d~li~~Ag~   93 (261)
T 3n74_A           85 DILVNNAGI   93 (261)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999999873

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.96  E-value=0.0059  Score=52.48  Aligned_cols=95  Identities=19%  Similarity=0.247  Sum_probs=67.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      ...+|+|.|.|.+|..+++.++..|. .|++++.++++.+.+++.|...++ |..+   .+   .+++. +-..+|+++-
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~g~~vi~GDat~---~~---~L~~a-gi~~A~~viv   74 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKFGMKVFYGDATR---MD---LLESA-GAAKAEVLIN   74 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHTTCCCEESCTTC---HH---HHHHT-TTTTCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhCCCeEEEcCCCC---HH---HHHhc-CCCccCEEEE
Confidence            34679999999999999999999999 999999999999999998865444 2222   22   23332 3347999999


Q ss_pred             ccCChhHH---HHHHHHcccCCcEEEEE
Q 024295          163 CTGVPSLL---SEALETTKVGKGKVIVI  187 (269)
Q Consensus       163 ~~g~~~~~---~~~~~~l~~~~G~~v~~  187 (269)
                      +++.+..-   -...+.+.+. .+++.-
T Consensus        75 ~~~~~~~n~~i~~~ar~~~p~-~~Iiar  101 (413)
T 3l9w_A           75 AIDDPQTNLQLTEMVKEHFPH-LQIIAR  101 (413)
T ss_dssp             CCSSHHHHHHHHHHHHHHCTT-CEEEEE
T ss_pred             CCCChHHHHHHHHHHHHhCCC-CeEEEE
Confidence            99875442   2334445563 555543

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.96  E-value=0.0053  Score=51.19  Aligned_cols=89  Identities=25%  Similarity=0.366  Sum_probs=65.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+++|.|+|.|.+|...++.++..|. +|++.+++.++ +.+++.|+..         .++.+.+ +     ..|+|+.+
T Consensus       164 ~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~---------~~l~ell-~-----~aDvV~l~  226 (335)
T 2g76_A          164 NGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP-EVSASFGVQQ---------LPLEEIW-P-----LCDFITVH  226 (335)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH-HHHHHTTCEE---------CCHHHHG-G-----GCSEEEEC
T ss_pred             CcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCcee---------CCHHHHH-h-----cCCEEEEe
Confidence            57899999999999999999999999 99999987765 4566777642         1122222 1     67999988


Q ss_pred             cCChhH----H-HHHHHHcccCCcEEEEEccC
Q 024295          164 TGVPSL----L-SEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       164 ~g~~~~----~-~~~~~~l~~~~G~~v~~g~~  190 (269)
                      +...+.    + ...+..++++ +.++.++..
T Consensus       227 ~P~t~~t~~li~~~~l~~mk~g-ailIN~arg  257 (335)
T 2g76_A          227 TPLLPSTTGLLNDNTFAQCKKG-VRVVNCARG  257 (335)
T ss_dssp             CCCCTTTTTSBCHHHHTTSCTT-EEEEECSCT
T ss_pred             cCCCHHHHHhhCHHHHhhCCCC-cEEEECCCc
Confidence            854321    2 4677889996 888888764

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.96  E-value=0.0027  Score=53.57  Aligned_cols=90  Identities=21%  Similarity=0.321  Sum_probs=64.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCe-EEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAK-IIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~-v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      .+++|.|+|.|.+|...++.++..|. + |++.++++++.+.+.+.|+..+        .++.+.+.      ..|+|+.
T Consensus       163 ~g~tvgIIG~G~IG~~vA~~l~~~G~-~~V~~~d~~~~~~~~~~~~g~~~~--------~~l~ell~------~aDvV~l  227 (364)
T 2j6i_A          163 EGKTIATIGAGRIGYRVLERLVPFNP-KELLYYDYQALPKDAEEKVGARRV--------ENIEELVA------QADIVTV  227 (364)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCC-SEEEEECSSCCCHHHHHHTTEEEC--------SSHHHHHH------TCSEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCCccchhHHHhcCcEec--------CCHHHHHh------cCCEEEE
Confidence            57899999999999999999999999 6 9999988777776777774421        12322222      5688888


Q ss_pred             ccCChh----HH-HHHHHHcccCCcEEEEEcc
Q 024295          163 CTGVPS----LL-SEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       163 ~~g~~~----~~-~~~~~~l~~~~G~~v~~g~  189 (269)
                      ++...+    .+ ...+..++++ +.++.++.
T Consensus       228 ~~P~t~~t~~li~~~~l~~mk~g-a~lIn~ar  258 (364)
T 2j6i_A          228 NAPLHAGTKGLINKELLSKFKKG-AWLVNTAR  258 (364)
T ss_dssp             CCCCSTTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred             CCCCChHHHHHhCHHHHhhCCCC-CEEEECCC
Confidence            775421    11 3456777885 77777764

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.95  E-value=0.0045  Score=49.85  Aligned_cols=65  Identities=11%  Similarity=0.125  Sum_probs=51.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      +++++|+|+|++|.+++..+...|. +|+++.|+.++.+.+.+++.. .....+     +         . .+|+|++|+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~-~v~V~nRt~~ka~~la~~~~~-~~~~~~-----l---------~-~~DiVInaT  180 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGL-QVSVLNRSSRGLDFFQRLGCD-CFMEPP-----K---------S-AFDLIINAT  180 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTTHHHHHHHTCE-EESSCC-----S---------S-CCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCe-EecHHH-----h---------c-cCCEEEEcc
Confidence            8899999999999999999999994 999999999888766577643 333322     1         1 789999998


Q ss_pred             CC
Q 024295          165 GV  166 (269)
Q Consensus       165 g~  166 (269)
                      +.
T Consensus       181 p~  182 (269)
T 3phh_A          181 SA  182 (269)
T ss_dssp             TT
T ss_pred             cC
Confidence            53

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.94  E-value=0.009  Score=50.01  Aligned_cols=132  Identities=9%  Similarity=0.112  Sum_probs=82.6

Q ss_pred             eEEEEcCChhHHH-HHHHHHHc-CCCeEEEE-cCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           87 SVAVLGLGTVGLG-AVDGARMH-GAAKIIGI-DKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        87 ~vlI~G~g~~G~~-a~~la~~~-g~~~v~~~-~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      ++.|+|+|.+|.. .+...+.. ++ +++++ ++++++.+. ++++|...++       .++.+.+.    ...+|+|+-
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~-~lvav~d~~~~~a~~~a~~~g~~~~y-------~d~~ell~----~~~iDaV~I   92 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENC-VVTAIASRDLTRAREMADRFSVPHAF-------GSYEEMLA----SDVIDAVYI   92 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSE-EEEEEECSSHHHHHHHHHHHTCSEEE-------SSHHHHHH----CSSCSEEEE
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCe-EEEEEECCCHHHHHHHHHHcCCCeee-------CCHHHHhc----CCCCCEEEE
Confidence            6889999999964 45555544 66 66655 566666554 5668876665       33444443    238999999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      |+....+.+.+..+++.  |+-|++..|.... .-....+.    .++..+.-...  +.....+..+.+++.+|.+
T Consensus        93 ~tP~~~H~~~~~~al~a--GkhVl~EKPla~~-~~ea~~l~~~a~~~~~~l~v~~~--~R~~p~~~~~k~~i~~G~i  164 (350)
T 4had_A           93 PLPTSQHIEWSIKAADA--GKHVVCEKPLALK-AGDIDAVIAARDRNKVVVTEAYM--ITYSPVWQKVRSLIDEGAI  164 (350)
T ss_dssp             CSCGGGHHHHHHHHHHT--TCEEEECSCCCSS-GGGGHHHHHHHHHHTCCEEECCG--GGGSHHHHHHHHHHHTTTT
T ss_pred             eCCCchhHHHHHHHHhc--CCEEEEeCCcccc-hhhHHHHHHHHHHcCCceeEeee--eecCHHHHHhhHhhhcCCC
Confidence            99888788888888877  6888887665311 11122222    23333322221  1122457888899999876

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.93  E-value=0.0063  Score=50.74  Aligned_cols=88  Identities=19%  Similarity=0.340  Sum_probs=62.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+.+|.|+|.|.+|...++.++..|. +|++.++++++ +.++++|...         .++.+.+.      ..|+|+.+
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~---------~~l~~~l~------~aDvVil~  211 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE-EVERELNAEF---------KPLEDLLR------ESDFVVLA  211 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHHCCEE---------CCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch-hhHhhcCccc---------CCHHHHHh------hCCEEEEC
Confidence            46899999999999999999999999 99999998877 5555666431         12322232      56888888


Q ss_pred             cCChh----HH-HHHHHHcccCCcEEEEEcc
Q 024295          164 TGVPS----LL-SEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       164 ~g~~~----~~-~~~~~~l~~~~G~~v~~g~  189 (269)
                      +....    .+ ...+..++++ ..++.++.
T Consensus       212 vp~~~~t~~~i~~~~~~~mk~~-ailIn~sr  241 (334)
T 2dbq_A          212 VPLTRETYHLINEERLKLMKKT-AILINIAR  241 (334)
T ss_dssp             CCCCTTTTTCBCHHHHHHSCTT-CEEEECSC
T ss_pred             CCCChHHHHhhCHHHHhcCCCC-cEEEECCC
Confidence            85432    12 3556778885 77777663

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.93  E-value=0.0026  Score=51.51  Aligned_cols=80  Identities=18%  Similarity=0.131  Sum_probs=52.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCce-e--eCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMTD-F--INPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      .++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+. +++... .  .|-.+  .++..+.+.+... -.++
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i  102 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIGSKAFGVRVDVSS--AKDAESMVEKTTAKWGRV  102 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            5789999986 8999999999888999 9999999887766543 344322 1  23322  1222222222211 0279


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus       103 D~lv~nAg~  111 (277)
T 4dqx_A          103 DVLVNNAGF  111 (277)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999873

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.92  E-value=0.013  Score=47.99  Aligned_cols=75  Identities=23%  Similarity=0.221  Sum_probs=55.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      .+|.|+|.|.+|......+...|. +|++.++++++.+.+.+.|........+    +       ..  ...|+||-++.
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~~~~----e-------~~--~~aDvvi~~vp   73 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAEGACGAAASAR----E-------FA--GVVDALVILVV   73 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEESSST----T-------TT--TTCSEEEECCS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCCccccCCHH----H-------HH--hcCCEEEEECC
Confidence            579999999999998888888899 9999999999999888887654222211    1       11  15688888887


Q ss_pred             ChhHHHHHH
Q 024295          166 VPSLLSEAL  174 (269)
Q Consensus       166 ~~~~~~~~~  174 (269)
                      .+......+
T Consensus        74 ~~~~~~~v~   82 (303)
T 3g0o_A           74 NAAQVRQVL   82 (303)
T ss_dssp             SHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            654555544

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=96.92  E-value=0.0034  Score=49.01  Aligned_cols=97  Identities=21%  Similarity=0.258  Sum_probs=66.2

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhC----C-------CceeeCCCCCCCccHHHHH
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKAF----G-------MTDFINPDDEPNKSISELV  148 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~~----g-------~~~v~~~~~~~~~~~~~~i  148 (269)
                      .++++.+||.+|+|+ |..+..+++..|. .+|++++.+++..+.+++.    +       .-.++..      +..+  
T Consensus        74 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~------d~~~--  144 (226)
T 1i1n_A           74 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG------DGRM--  144 (226)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES------CGGG--
T ss_pred             hCCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEEC------Cccc--
Confidence            377899999999986 8888899988764 2999999999888777542    2       1112211      1110  


Q ss_pred             HhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEc
Q 024295          149 KGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                       .......||+|+........+..+.+.+++| |+++..-
T Consensus       145 -~~~~~~~fD~i~~~~~~~~~~~~~~~~Lkpg-G~lv~~~  182 (226)
T 1i1n_A          145 -GYAEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILPV  182 (226)
T ss_dssp             -CCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred             -CcccCCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEE
Confidence             0111237999987665444668889999996 9987753

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.92  E-value=0.0027  Score=50.66  Aligned_cols=80  Identities=14%  Similarity=0.161  Sum_probs=52.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCce---eeCCCCCCCccHHHHHHhhhCCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTD---FINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~---v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      +++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+.+    .+...   ..|-.+  .+...+.+.+.....
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~g   82 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARN--EDEVTAFLNAADAHA   82 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCC--HHHHHHHHHHHHhhC
Confidence            5788999986 8999999999888999 99999999877665432    34321   223322  122222222221112


Q ss_pred             CccEEEEccCC
Q 024295          156 GVDYCFECTGV  166 (269)
Q Consensus       156 ~~d~v~d~~g~  166 (269)
                      ++|++++++|.
T Consensus        83 ~id~lv~nAg~   93 (252)
T 3h7a_A           83 PLEVTIFNVGA   93 (252)
T ss_dssp             CEEEEEECCCC
T ss_pred             CceEEEECCCc
Confidence            89999999874

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.91  E-value=0.0039  Score=49.43  Aligned_cols=77  Identities=18%  Similarity=0.248  Sum_probs=52.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC-Cce-eeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG-MTD-FINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g-~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.++. ... ..|-.+   .+..+.+.+.. + ++|++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~-~-~id~l   78 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTK---KKQIDQFANEV-E-RLDVL   78 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTC---HHHHHHHHHHC-S-CCSEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhccCceEEEeeCCC---HHHHHHHHHHh-C-CCCEE
Confidence            4688999986 8999999998888999 9999999887665544432 111 223332   33333333322 2 79999


Q ss_pred             EEccCC
Q 024295          161 FECTGV  166 (269)
Q Consensus       161 ~d~~g~  166 (269)
                      ++++|.
T Consensus        79 v~~Ag~   84 (246)
T 2ag5_A           79 FNVAGF   84 (246)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999873

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=96.91  E-value=0.0079  Score=48.25  Aligned_cols=80  Identities=20%  Similarity=0.232  Sum_probs=50.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hC-----CCc-ee--eCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AF-----GMT-DF--INPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~-----g~~-~v--~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. ++     +.. ..  .|-.+  ++++.+.+.+...
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   82 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD--QQQLRDTFRKVVD   82 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCC--HHHHHHHHHHHHH
Confidence            4678999986 8999999999888999 9999999876654332 22     111 11  23322  1223333322211


Q ss_pred             -CCCccEEEEccCC
Q 024295          154 -GMGVDYCFECTGV  166 (269)
Q Consensus       154 -~~~~d~v~d~~g~  166 (269)
                       -.++|++++++|.
T Consensus        83 ~~g~id~lv~~Ag~   96 (267)
T 2gdz_A           83 HFGRLDILVNNAGV   96 (267)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence             0279999999874

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.91  E-value=0.0042  Score=50.20  Aligned_cols=73  Identities=15%  Similarity=0.134  Sum_probs=51.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      ++++++|+|+|++|.+++..+...|+ +|++++|++++.+.+ ++++...-++..+  ..+    +   .. .++|++++
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la~~~~~~~~~~~~~--~~~----~---~~-~~~DivVn  186 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALS--MDE----L---EG-HEFDLIIN  186 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECC--SGG----G---TT-CCCSEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHhhccCCeeEec--HHH----h---cc-CCCCEEEE
Confidence            57899999999999999999999997 999999998876544 4454310011111  011    1   11 38999999


Q ss_pred             ccCCh
Q 024295          163 CTGVP  167 (269)
Q Consensus       163 ~~g~~  167 (269)
                      +++..
T Consensus       187 ~t~~~  191 (271)
T 1nyt_A          187 ATSSG  191 (271)
T ss_dssp             CCSCG
T ss_pred             CCCCC
Confidence            99865

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.91  E-value=0.0029  Score=50.60  Aligned_cols=80  Identities=15%  Similarity=0.202  Sum_probs=52.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCc-ee--eCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMT-DF--INPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+ ++++.. ..  .|-.+  +++..+.+.+... -.++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   83 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIGPAAYAVQMDVTR--QDSIDAAIAATVEHAGGL   83 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHSSSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCCceEEEeeCCC--HHHHHHHHHHHHHHcCCC
Confidence            5789999986 8999999998888999 999999988776654 334432 12  23322  1223333332211 1279


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus        84 d~lv~~Ag~   92 (259)
T 4e6p_A           84 DILVNNAAL   92 (259)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999874

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=96.91  E-value=0.0024  Score=51.95  Aligned_cols=96  Identities=16%  Similarity=0.147  Sum_probs=64.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C----CC--------ceeeCCCCCCCccHHHHHH
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F----GM--------TDFINPDDEPNKSISELVK  149 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~----g~--------~~v~~~~~~~~~~~~~~i~  149 (269)
                      .++.+||++|+|. |..+..+++. +..+|++++.+++..+.+++ +    +.        +.-+....   .+..+.+.
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~---~D~~~~l~  148 (281)
T 1mjf_A           74 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI---GDGFEFIK  148 (281)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE---SCHHHHHH
T ss_pred             CCCCeEEEEcCCc-CHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEE---CchHHHhc
Confidence            4568999999876 7778888887 76699999999988888876 3    11        10011111   33333343


Q ss_pred             hhhCCCCccEEE-EccC---------ChhHHHHHHHHcccCCcEEEEE
Q 024295          150 GITHGMGVDYCF-ECTG---------VPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       150 ~~~~~~~~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      .  ++ .||+|+ |...         ....+..+.+.|+++ |.++..
T Consensus       149 ~--~~-~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg-G~lv~~  192 (281)
T 1mjf_A          149 N--NR-GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQ  192 (281)
T ss_dssp             H--CC-CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEE
T ss_pred             c--cC-CeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEE
Confidence            3  33 799887 4331         133578889999996 998875

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.91  E-value=0.0098  Score=46.83  Aligned_cols=76  Identities=18%  Similarity=0.209  Sum_probs=50.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C-CCcee-eCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F-GMTDF-INPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~-g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+ . +...+ .|-.+   .+..+.+.+  .-.++|+
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~--~~~~id~   79 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGD---WDATEKALG--GIGPVDL   79 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HHHHHHHHT--TCCCCSE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCCcEEecCCC---HHHHHHHHH--HcCCCCE
Confidence            4688999986 9999999999888999 99999998876655433 3 33222 23222   222222222  1126899


Q ss_pred             EEEccC
Q 024295          160 CFECTG  165 (269)
Q Consensus       160 v~d~~g  165 (269)
                      +++++|
T Consensus        80 vi~~Ag   85 (244)
T 1cyd_A           80 LVNNAA   85 (244)
T ss_dssp             EEECCC
T ss_pred             EEECCc
Confidence            999987

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.90  E-value=0.0028  Score=51.14  Aligned_cols=80  Identities=14%  Similarity=0.133  Sum_probs=52.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCc---eeeCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMT---DFINPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~---~v~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+. +++..   ...|-.+  .++..+.+.+... -.++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   86 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASVGRGAVHHVVDLTN--EVSVRALIDFTIDTFGRL   86 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHHCTTCEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCCeEEEECCCCC--HHHHHHHHHHHHHHcCCC
Confidence            4789999986 8999999999989999 9999999988776553 34432   1223332  1222222222211 0279


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus        87 d~lv~nAg~   95 (271)
T 3tzq_B           87 DIVDNNAAH   95 (271)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998874

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.90  E-value=0.0044  Score=50.08  Aligned_cols=70  Identities=14%  Similarity=0.148  Sum_probs=51.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCC--ceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGM--TDFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~--~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      .+++++|+|+|++|.+++..+...|+++|+++.|+.++.+.+ ++++.  ..+....     ++       .. ..+|+|
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~-----~l-------~~-~~~Div  185 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYE-----AL-------EG-QSFDIV  185 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSG-----GG-------TT-CCCSEE
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHH-----Hh-------cc-cCCCEE
Confidence            578999999999999999988889977999999998876654 44443  2223221     11       11 389999


Q ss_pred             EEccCC
Q 024295          161 FECTGV  166 (269)
Q Consensus       161 ~d~~g~  166 (269)
                      ++|++.
T Consensus       186 InaTp~  191 (272)
T 3pwz_A          186 VNATSA  191 (272)
T ss_dssp             EECSSG
T ss_pred             EECCCC
Confidence            999864

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=96.90  E-value=0.0023  Score=51.08  Aligned_cols=99  Identities=15%  Similarity=0.120  Sum_probs=64.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHHhhhCCC
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      ..++.+||-+|+|+ |..++.+++.....+|+++|.+++..+.+++    +|..  .++.      .+..+.........
T Consensus        78 ~~~~~~vLDiG~G~-G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~------~d~~~~~~~~~~~~  150 (249)
T 3g89_A           78 WQGPLRVLDLGTGA-GFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALW------GRAEVLAREAGHRE  150 (249)
T ss_dssp             CCSSCEEEEETCTT-TTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEE------CCHHHHTTSTTTTT
T ss_pred             cCCCCEEEEEcCCC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEE------CcHHHhhcccccCC
Confidence            35788999999875 7777788887644499999999988887764    4543  2222      22322111100123


Q ss_pred             CccEEEEcc-CC-hhHHHHHHHHcccCCcEEEEEc
Q 024295          156 GVDYCFECT-GV-PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       156 ~~d~v~d~~-g~-~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .||+|+-.. .. +..+..+.+.+++| |+++.+-
T Consensus       151 ~fD~I~s~a~~~~~~ll~~~~~~Lkpg-G~l~~~~  184 (249)
T 3g89_A          151 AYARAVARAVAPLCVLSELLLPFLEVG-GAAVAMK  184 (249)
T ss_dssp             CEEEEEEESSCCHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred             CceEEEECCcCCHHHHHHHHHHHcCCC-eEEEEEe
Confidence            799998543 22 33567778899996 9988764

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.90  E-value=0.0028  Score=50.58  Aligned_cols=80  Identities=18%  Similarity=0.191  Sum_probs=52.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCce-e--eCCCCCCCccHHHHHHhhhCC-CCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMTD-F--INPDDEPNKSISELVKGITHG-MGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~~-v--~~~~~~~~~~~~~~i~~~~~~-~~~  157 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+. +++... .  .|-.+  .+++.+.+.+.... .++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   80 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI--EEDWQRVVAYAREEFGSV   80 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            4688999986 8999999999888999 9999999887766543 344221 1  23322  12233333322111 179


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus        81 D~lv~nAg~   89 (254)
T 1hdc_A           81 DGLVNNAGI   89 (254)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.90  E-value=0.0041  Score=48.88  Aligned_cols=76  Identities=16%  Similarity=0.130  Sum_probs=50.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-----hCCCce-e--eCCCCCCCccHHHHH-H---hh
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-----AFGMTD-F--INPDDEPNKSISELV-K---GI  151 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-----~~g~~~-v--~~~~~~~~~~~~~~i-~---~~  151 (269)
                      ++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.     ..+... .  .|-.+   .+-.+.+ .   +.
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~~~~~   77 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSK---AESVEEFSKKVLER   77 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC---HHHHHHHCC-HHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCC---HHHHHHHHHHHHHh
Confidence            578999986 8999999999999999 8999999987665542     233322 2  23322   2222221 1   11


Q ss_pred             hCCCCccEEEEccCC
Q 024295          152 THGMGVDYCFECTGV  166 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~  166 (269)
                      . + ++|++++++|.
T Consensus        78 ~-g-~id~li~~Ag~   90 (235)
T 3l77_A           78 F-G-DVDVVVANAGL   90 (235)
T ss_dssp             H-S-SCSEEEECCCC
T ss_pred             c-C-CCCEEEECCcc
Confidence            2 2 79999999874

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.89  E-value=0.0041  Score=50.17  Aligned_cols=80  Identities=21%  Similarity=0.226  Sum_probs=51.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceee--CCCCCCCccHHHHHHhhhC-CCCcc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFI--NPDDEPNKSISELVKGITH-GMGVD  158 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~--~~~~~~~~~~~~~i~~~~~-~~~~d  158 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+ +.....+  |-.+  .+.+.+.+.+... -.++|
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~iD   84 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ--EDDVKTLVSETIRRFGRLD   84 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS--HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCeEEEcCCCC--HHHHHHHHHHHHHHcCCCC
Confidence            5788999986 8999999999888999 99999998877665533 3322222  3222  1222222222211 02799


Q ss_pred             EEEEccCC
Q 024295          159 YCFECTGV  166 (269)
Q Consensus       159 ~v~d~~g~  166 (269)
                      ++++++|.
T Consensus        85 ~lv~nAg~   92 (270)
T 1yde_A           85 CVVNNAGH   92 (270)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99998863

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.89  E-value=0.0073  Score=49.10  Aligned_cols=73  Identities=22%  Similarity=0.227  Sum_probs=53.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  166 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  166 (269)
                      +|.|+|.|.+|....+.+...|. +|++.++++++.+.+.+.|....        .+..+.+.      ..|+|+-++..
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~~~~~~~------~advvi~~v~~   67 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPAKCAPLVALGARQA--------SSPAEVCA------ACDITIAMLAD   67 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGGGGHHHHHHTCEEC--------SCHHHHHH------HCSEEEECCSS
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec--------CCHHHHHH------cCCEEEEEcCC
Confidence            68899999999988888887898 89999999999888877765321        22333332      46888888876


Q ss_pred             hhHHHHHH
Q 024295          167 PSLLSEAL  174 (269)
Q Consensus       167 ~~~~~~~~  174 (269)
                      +..+...+
T Consensus        68 ~~~~~~v~   75 (287)
T 3pdu_A           68 PAAAREVC   75 (287)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            54445444

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=96.88  E-value=0.00092  Score=53.82  Aligned_cols=97  Identities=21%  Similarity=0.272  Sum_probs=64.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHc---CCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhCC
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMH---GAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~---g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      ++++.+||-+|+|. |..+..+++..   |+ +|+++|.+++..+.+++    .+...-+....   .+.    .++. -
T Consensus        68 ~~~~~~vLDlGcGt-G~~~~~la~~~~~~~~-~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~---~D~----~~~~-~  137 (261)
T 4gek_A           68 VQPGTQVYDLGCSL-GAATLSVRRNIHHDNC-KIIAIDNSPAMIERCRRHIDAYKAPTPVDVIE---GDI----RDIA-I  137 (261)
T ss_dssp             CCTTCEEEEETCTT-THHHHHHHHTCCSSSC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE---SCT----TTCC-C
T ss_pred             CCCCCEEEEEeCCC-CHHHHHHHHhcCCCCC-EEEEEECCHHHHHHHHHHHHhhccCceEEEee---ccc----cccc-c
Confidence            78999999999986 88888888875   55 89999999988887765    23221111111   111    1121 2


Q ss_pred             CCccEEEEccCC--------hhHHHHHHHHcccCCcEEEEEcc
Q 024295          155 MGVDYCFECTGV--------PSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       155 ~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      ..+|+|+-...-        ...+.++.+.|+|| |+++....
T Consensus       138 ~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpG-G~lii~e~  179 (261)
T 4gek_A          138 ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPG-GALVLSEK  179 (261)
T ss_dssp             CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             cccccceeeeeeeecCchhHhHHHHHHHHHcCCC-cEEEEEec
Confidence            268888643221        12578899999997 99988653

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.88  E-value=0.014  Score=47.10  Aligned_cols=103  Identities=18%  Similarity=0.242  Sum_probs=62.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCc-chHHHH----HhCCCce-e--eCCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNP-WKKEKG----KAFGMTD-F--INPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~-~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  153 (269)
                      .++++||+|+ |++|.+.++.+...|+ +|+.++++. ++.+.+    ++.+... .  .|-.+  .++..+.+.+... 
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRD--AEAIEQAIRETVEA  106 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHH
Confidence            5789999986 8999999998888999 888885543 433332    3344332 1  23222  1223333332211 


Q ss_pred             CCCccEEEEccCCh----------h---------------HHHHHHHHcccCCcEEEEEccC
Q 024295          154 GMGVDYCFECTGVP----------S---------------LLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       154 ~~~~d~v~d~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      -.++|++++++|..          .               ..+.++..++.+ |+++.++..
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-g~iv~isS~  167 (271)
T 3v2g_A          107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDG-GRIITIGSN  167 (271)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCG
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CEEEEEeCh
Confidence            12799999998741          0               234455566775 999998754

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=96.88  E-value=0.0093  Score=47.98  Aligned_cols=104  Identities=22%  Similarity=0.216  Sum_probs=63.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC-cchHHH----HHhCCCce-e--eCCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN-PWKKEK----GKAFGMTD-F--INPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~-~~~~~~----~~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  153 (269)
                      .++++||+|+ |++|.+.++.+...|+ +|+.++++ +++.+.    +++.+... .  .|-.+  .++..+.+.+... 
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   93 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQ--VPEIVKLFDQAVAH   93 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5789999986 8999999999889999 88887654 333332    23344322 2  23222  1223222322211 


Q ss_pred             CCCccEEEEccCChh-------------------------HHHHHHHHcccCCcEEEEEccCC
Q 024295          154 GMGVDYCFECTGVPS-------------------------LLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       154 ~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      -.++|++++++|...                         ..+.++..++++ |+++.++...
T Consensus        94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~~  155 (270)
T 3is3_A           94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEG-GRIVLTSSNT  155 (270)
T ss_dssp             HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCTT
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CeEEEEeCch
Confidence            027999999887410                         234556677775 9999998654

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.88  E-value=0.0031  Score=49.14  Aligned_cols=97  Identities=15%  Similarity=0.227  Sum_probs=59.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      .+|||+|+ |.+|...++.+...|. +|++++|++++.+.+. .+. .++..+-   .+ .+.+.+...  ++|+||.++
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-~~~-~~~~~Dl---~d-~~~~~~~~~--~~d~vi~~a   75 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKIKIEN-EHL-KVKKADV---SS-LDEVCEVCK--GADAVISAF   75 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGCCCCC-TTE-EEECCCT---TC-HHHHHHHHT--TCSEEEECC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccchhcc-Cce-EEEEecC---CC-HHHHHHHhc--CCCEEEEeC
Confidence            57999996 8999999999998998 9999999876653321 111 2222111   11 122333332  689999998


Q ss_pred             CCh-----------hHHHHHHHHcccC-CcEEEEEccCC
Q 024295          165 GVP-----------SLLSEALETTKVG-KGKVIVIGVGV  191 (269)
Q Consensus       165 g~~-----------~~~~~~~~~l~~~-~G~~v~~g~~~  191 (269)
                      |..           .....+++.++.. -.+++.++...
T Consensus        76 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~  114 (227)
T 3dhn_A           76 NPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAG  114 (227)
T ss_dssp             CC------CCSHHHHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred             cCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChh
Confidence            753           1233455555542 14788887543

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=96.87  E-value=0.0032  Score=50.13  Aligned_cols=80  Identities=15%  Similarity=0.165  Sum_probs=51.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C-----C-C-cee--eCCCCCCCccHHHHHHhhh
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F-----G-M-TDF--INPDDEPNKSISELVKGIT  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~-----g-~-~~v--~~~~~~~~~~~~~~i~~~~  152 (269)
                      .++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+.+ +     + . ...  .|-.+  .++..+.+.+..
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   82 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITD--CTKADTEIKDIH   82 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTC--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCC--HHHHHHHHHHHH
Confidence            4688999986 8999999988888899 99999999877665432 1     2 1 112  23322  122222222221


Q ss_pred             C-CCCccEEEEccCC
Q 024295          153 H-GMGVDYCFECTGV  166 (269)
Q Consensus       153 ~-~~~~d~v~d~~g~  166 (269)
                      . -.++|++++++|.
T Consensus        83 ~~~g~iD~lvnnAg~   97 (250)
T 3nyw_A           83 QKYGAVDILVNAAAM   97 (250)
T ss_dssp             HHHCCEEEEEECCCC
T ss_pred             HhcCCCCEEEECCCc
Confidence            1 1279999999874

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.86  E-value=0.0024  Score=51.45  Aligned_cols=80  Identities=23%  Similarity=0.224  Sum_probs=52.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCce-e--eCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTD-F--INPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+ ++++... .  .|-.+  ..+..+.+.+... -.++
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i  102 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADLGKDVFVFSANLSD--RKSIKQLAEVAEREMEGI  102 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTS--HHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEeecCC--HHHHHHHHHHHHHHcCCC
Confidence            5789999986 8999999999989999 999999988776654 3455332 2  22222  1222222222211 1279


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus       103 D~lvnnAg~  111 (266)
T 3grp_A          103 DILVNNAGI  111 (266)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=96.86  E-value=0.0069  Score=48.10  Aligned_cols=80  Identities=16%  Similarity=0.147  Sum_probs=51.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCc-chHH-HHHhCCCce-e--eCCCCCCCccHHHHHHhhhC-CCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNP-WKKE-KGKAFGMTD-F--INPDDEPNKSISELVKGITH-GMG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~-~~~~-~~~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~~~  156 (269)
                      +++++||+|+ |.+|.+.+..+...|+ +|+++++++ ++.+ .+++.+... .  .|-.+  ++.+.+.+.+... -.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~   82 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ--PGDVEAFGKQVISTFGR   82 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHHHHHhcCCcEEEEEeecCC--HHHHHHHHHHHHHHcCC
Confidence            4688999986 8999999998888999 999999887 5544 344455321 1  23322  1223222222211 027


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|++++++|.
T Consensus        83 id~lv~nAg~   92 (249)
T 2ew8_A           83 CDILVNNAGI   92 (249)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=96.86  E-value=0.0049  Score=50.33  Aligned_cols=45  Identities=20%  Similarity=0.274  Sum_probs=37.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF  128 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~  128 (269)
                      .++.+||-+|+|. |..+..+++..+..+|+++|.+++..+.+++.
T Consensus        45 ~~~~~VLDiGCG~-G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~   89 (292)
T 3g07_A           45 FRGRDVLDLGCNV-GHLTLSIACKWGPSRMVGLDIDSRLIHSARQN   89 (292)
T ss_dssp             TTTSEEEEESCTT-CHHHHHHHHHTCCSEEEEEESCHHHHHHHHHT
T ss_pred             cCCCcEEEeCCCC-CHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH
Confidence            3678999999986 88899999988655999999998888777663

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=96.85  E-value=0.0077  Score=46.62  Aligned_cols=100  Identities=18%  Similarity=0.095  Sum_probs=62.9

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHH----HHHhCCCceeeCCCCCCCccHHHHHHhhhCCC
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKE----KGKAFGMTDFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~----~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      ..++++++||-+|+|+ |..+..+++..+..+|+++|.+++..+    .+++......+..+.   .... ..... . .
T Consensus        53 ~~~~~g~~VLDlGcGt-G~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~---~~~~-~~~~~-~-~  125 (210)
T 1nt2_A           53 LKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA---SKPW-KYSGI-V-E  125 (210)
T ss_dssp             CCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT---TCGG-GTTTT-C-C
T ss_pred             cCCCCCCEEEEECCcC-CHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCC---CCch-hhccc-c-c
Confidence            4567899999999986 888888888876338999999986433    334332212222111   1110 00011 2 3


Q ss_pred             CccEEEEccCChh----HHHHHHHHcccCCcEEEEE
Q 024295          156 GVDYCFECTGVPS----LLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       156 ~~d~v~d~~g~~~----~~~~~~~~l~~~~G~~v~~  187 (269)
                      .||+|+-.+..+.    .+..+.+.|++| |+++..
T Consensus       126 ~fD~V~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~i~  160 (210)
T 1nt2_A          126 KVDLIYQDIAQKNQIEILKANAEFFLKEK-GEVVIM  160 (210)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             ceeEEEEeccChhHHHHHHHHHHHHhCCC-CEEEEE
Confidence            7999986554332    257788999996 999876

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.85  E-value=0.0027  Score=50.93  Aligned_cols=80  Identities=11%  Similarity=0.108  Sum_probs=51.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchH-HHHHhCCCcee-eCCCCCCCccHHHHHHhhhC-CCCccE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKK-EKGKAFGMTDF-INPDDEPNKSISELVKGITH-GMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~-~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~-~~~~d~  159 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+++++++++. +.+++.+...+ .|-.+  .+...+.+.+... -.++|+
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~iD~  102 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHASVTELRQAGAVALYGDFSC--ETGIMAFIDLLKTQTSSLRA  102 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHHHHHHHHHTCEEEECCTTS--HHHHHHHHHHHHHHCSCCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhcCCeEEECCCCC--HHHHHHHHHHHHHhcCCCCE
Confidence            4678999986 8999999998888899 899999887654 33445554332 23332  1223222322211 127999


Q ss_pred             EEEccCC
Q 024295          160 CFECTGV  166 (269)
Q Consensus       160 v~d~~g~  166 (269)
                      +++++|.
T Consensus       103 lv~nAg~  109 (260)
T 3gem_A          103 VVHNASE  109 (260)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999873

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.85  E-value=0.0024  Score=51.04  Aligned_cols=80  Identities=19%  Similarity=0.268  Sum_probs=46.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCc-ee--eCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMT-DF--INPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+ ++++.. ..  .|-.+  .++..+.+.+... -.++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   82 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAELGAAVRFRNADVTN--EADATAALAFAKQEFGHV   82 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC------------CEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            5788999986 8999999999888999 999999988766554 334421 12  23222  1222222222211 1279


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus        83 d~lv~nAg~   91 (257)
T 3tpc_A           83 HGLVNCAGT   91 (257)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.85  E-value=0.0068  Score=50.83  Aligned_cols=90  Identities=22%  Similarity=0.312  Sum_probs=63.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHH-HcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGAR-MHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~-~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      .+++|.|+|.|.+|...++.++ ..|. +|++.++++++.+.++++|...+        .++.+.+.      ..|+|+.
T Consensus       162 ~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~~~~~g~~~~--------~~l~ell~------~aDvVil  226 (348)
T 2w2k_A          162 RGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAETEKALGAERV--------DSLEELAR------RSDCVSV  226 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHTCEEC--------SSHHHHHH------HCSEEEE
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhhHhhcCcEEe--------CCHHHHhc------cCCEEEE
Confidence            5789999999999999999999 8999 99999998877766666665421        12322232      4688888


Q ss_pred             ccCChh----HH-HHHHHHcccCCcEEEEEcc
Q 024295          163 CTGVPS----LL-SEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       163 ~~g~~~----~~-~~~~~~l~~~~G~~v~~g~  189 (269)
                      ++....    .+ ...+..++++ ..++.++.
T Consensus       227 ~vp~~~~t~~li~~~~l~~mk~g-ailin~sr  257 (348)
T 2w2k_A          227 SVPYMKLTHHLIDEAFFAAMKPG-SRIVNTAR  257 (348)
T ss_dssp             CCCCSGGGTTCBCHHHHHHSCTT-EEEEECSC
T ss_pred             eCCCChHHHHHhhHHHHhcCCCC-CEEEECCC
Confidence            875422    11 3566778885 77766654

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.85  E-value=0.0048  Score=52.53  Aligned_cols=90  Identities=13%  Similarity=0.165  Sum_probs=62.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+++|.|+|.|.+|...++.++..|. +|++.++++++.+..+++|+...        .++.+.+ +     ..|+|+.+
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~~~~~~~G~~~~--------~~l~ell-~-----~aDvV~l~  254 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH--------ATREDMY-P-----VCDVVTLN  254 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC--------SSHHHHG-G-----GCSEEEEC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccchhhHhhcCceec--------CCHHHHH-h-----cCCEEEEe
Confidence            57899999999999999999999999 99999988766666666665421        1222212 1     56888877


Q ss_pred             cCChh----HH-HHHHHHcccCCcEEEEEcc
Q 024295          164 TGVPS----LL-SEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       164 ~g~~~----~~-~~~~~~l~~~~G~~v~~g~  189 (269)
                      +...+    .+ ...+..++++ ..++.++.
T Consensus       255 ~Plt~~t~~li~~~~l~~mk~g-ailIN~aR  284 (393)
T 2nac_A          255 CPLHPETEHMINDETLKLFKRG-AYIVNTAR  284 (393)
T ss_dssp             SCCCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred             cCCchHHHHHhhHHHHhhCCCC-CEEEECCC
Confidence            75321    12 3556677775 77777764

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=96.84  E-value=0.011  Score=46.10  Aligned_cols=100  Identities=12%  Similarity=0.094  Sum_probs=66.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      ++..||-+|+|. |..+..+++.....+|++++.+++..+.+++    .+...+ ....   .+..+.+........+|.
T Consensus        34 ~~~~vLDiGcG~-G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv-~~~~---~Da~~~l~~~~~~~~~d~  108 (218)
T 3dxy_A           34 EAPVTLEIGFGM-GASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNL-RVMC---HDAVEVLHKMIPDNSLRM  108 (218)
T ss_dssp             CCCEEEEESCTT-CHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSE-EEEC---SCHHHHHHHHSCTTCEEE
T ss_pred             CCCeEEEEeeeC-hHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcE-EEEE---CCHHHHHHHHcCCCChhe
Confidence            568899999986 8888899987643499999999887776643    443321 1111   444444443333347898


Q ss_pred             EEEccCC--------------hhHHHHHHHHcccCCcEEEEEcc
Q 024295          160 CFECTGV--------------PSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       160 v~d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      |+-....              +..+..+.+.|++| |.++....
T Consensus       109 v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpG-G~l~i~td  151 (218)
T 3dxy_A          109 VQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLG-GVFHMATD  151 (218)
T ss_dssp             EEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEE-EEEEEEES
T ss_pred             EEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCC-cEEEEEeC
Confidence            8754221              13678888999996 99877643

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=96.84  E-value=0.0027  Score=51.02  Aligned_cols=101  Identities=15%  Similarity=0.034  Sum_probs=64.6

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee--CCCCCCCccHHHHHHhhhC
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI--NPDDEPNKSISELVKGITH  153 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~~i~~~~~  153 (269)
                      +.....++++.+||-+|+|+ |..+..+++. |. +|++++.+++..+.+++.-....+  +..+   .+.  ......+
T Consensus        37 il~~l~l~~g~~VLDlGcGt-G~~a~~La~~-g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~---~~~--~~~~~~~  108 (261)
T 3iv6_A           37 DIFLENIVPGSTVAVIGAST-RFLIEKALER-GA-SVTVFDFSQRMCDDLAEALADRCVTIDLLD---ITA--EIPKELA  108 (261)
T ss_dssp             HHHTTTCCTTCEEEEECTTC-HHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTSSSCCEEEECC---TTS--CCCGGGT
T ss_pred             HHHhcCCCCcCEEEEEeCcc-hHHHHHHHhc-CC-EEEEEECCHHHHHHHHHHHHhccceeeeee---ccc--ccccccC
Confidence            34556788999999999986 8888888875 77 999999999999988774321111  1111   000  0000012


Q ss_pred             CCCccEEEEccCC--------hhHHHHHHHHcccCCcEEEEE
Q 024295          154 GMGVDYCFECTGV--------PSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       154 ~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~  187 (269)
                       ..||+|+-...-        ...+..+.+.+ || |+++..
T Consensus       109 -~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PG-G~l~lS  147 (261)
T 3iv6_A          109 -GHFDFVLNDRLINRFTTEEARRACLGMLSLV-GS-GTVRAS  147 (261)
T ss_dssp             -TCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TT-SEEEEE
T ss_pred             -CCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cC-cEEEEE
Confidence             279999854321        22466777788 96 988754

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=96.83  E-value=0.01  Score=49.83  Aligned_cols=131  Identities=15%  Similarity=0.158  Sum_probs=80.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHc--CCCeEE-EEcCCcchHHHH-HhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           86 SSVAVLGLGTVGLGAVDGARMH--GAAKII-GIDKNPWKKEKG-KAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~--g~~~v~-~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      -+|.|+|+|.+|...+..++..  ++ +++ +.++++++.+.+ +++|. ..+       .++.+.+.+    ..+|+|+
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~-~lvav~d~~~~~~~~~~~~~~~-~~~-------~~~~~ll~~----~~~D~V~   80 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRA-ELIDVCDIDPAALKAAVERTGA-RGH-------ASLTDMLAQ----TDADIVI   80 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTE-EEEEEECSSHHHHHHHHHHHCC-EEE-------SCHHHHHHH----CCCSEEE
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCe-EEEEEEcCCHHHHHHHHHHcCC-cee-------CCHHHHhcC----CCCCEEE
Confidence            4689999999998776666655  66 555 557777776654 55776 333       334444432    3799999


Q ss_pred             EccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceE-EeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          162 ECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTL-KGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      .|+....+...+..++..  |+-|++..+.... .-....+.    .++..+ .+...   .....+..+.+++++|.+
T Consensus        81 i~tp~~~h~~~~~~al~~--gk~v~~EKP~a~~-~~~~~~l~~~a~~~g~~~~v~~~~---r~~p~~~~~k~~i~~g~i  153 (354)
T 3q2i_A           81 LTTPSGLHPTQSIECSEA--GFHVMTEKPMATR-WEDGLEMVKAADKAKKHLFVVKQN---RRNATLQLLKRAMQEKRF  153 (354)
T ss_dssp             ECSCGGGHHHHHHHHHHT--TCEEEECSSSCSS-HHHHHHHHHHHHHHTCCEEECCGG---GGSHHHHHHHHHHHTTTT
T ss_pred             ECCCcHHHHHHHHHHHHC--CCCEEEeCCCcCC-HHHHHHHHHHHHHhCCeEEEEEcc---cCCHHHHHHHHHHhcCCC
Confidence            999887777777777777  5667776554211 11111111    234433 23221   122458888899999875

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.83  E-value=0.0052  Score=51.55  Aligned_cols=88  Identities=18%  Similarity=0.230  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .|++|.|+|.|.+|...++.++..|. +|++.+++. +.+.+.+.|...+        .++.+.+.      ..|+|+-+
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~g~~~~--------~~l~ell~------~aDiV~l~  222 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGREN-SKERARADGFAVA--------ESKDALFE------QSDVLSVH  222 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHH-HHHHHHHTTCEEC--------SSHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCC-CHHHHHhcCceEe--------CCHHHHHh------hCCEEEEe
Confidence            47899999999999999999999999 999999875 3445566665421        23333332      46888877


Q ss_pred             cCChh-H----HHHHHHHcccCCcEEEEEc
Q 024295          164 TGVPS-L----LSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       164 ~g~~~-~----~~~~~~~l~~~~G~~v~~g  188 (269)
                      +...+ +    -...+..++++ ..++.++
T Consensus       223 ~Plt~~t~~li~~~~l~~mk~g-ailIN~a  251 (352)
T 3gg9_A          223 LRLNDETRSIITVADLTRMKPT-ALFVNTS  251 (352)
T ss_dssp             CCCSTTTTTCBCHHHHTTSCTT-CEEEECS
T ss_pred             ccCcHHHHHhhCHHHHhhCCCC-cEEEECC
Confidence            74221 1    23567778885 8888776

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.82  E-value=0.0035  Score=49.78  Aligned_cols=80  Identities=19%  Similarity=0.305  Sum_probs=51.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCc--ee--eCCCCCCCccHHHHHHhhhCCCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMT--DF--INPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~--~v--~~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+ ++++..  ..  .|-.+  .+.+.+.+.+...-.++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~i   86 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRAAQELGAAVAARIVADVTD--AEAMTAAAAEAEAVAPV   86 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEEECCTTC--HHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceeEEEEecCC--HHHHHHHHHHHHhhCCC
Confidence            4688999986 9999999998888999 999999988766554 334322  11  23322  12232222222111279


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus        87 d~li~~Ag~   95 (254)
T 2wsb_A           87 SILVNSAGI   95 (254)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEECCcc
Confidence            999999873

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=96.82  E-value=0.0022  Score=53.46  Aligned_cols=100  Identities=18%  Similarity=0.151  Sum_probs=66.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC------C-ceeeCCCCCCCccHHHHHHhhhCC
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG------M-TDFINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g------~-~~v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      ..+..+||++|+|. |..+..+++..+..+|++++.+++..+.+++.-      . +.-+....   .+..+.+....++
T Consensus       118 ~~~~~~VLdIG~G~-G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~---~D~~~~l~~~~~~  193 (334)
T 1xj5_A          118 IPNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI---GDGVAFLKNAAEG  193 (334)
T ss_dssp             SSCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE---SCHHHHHHTSCTT
T ss_pred             CCCCCEEEEECCCc-cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE---CCHHHHHHhccCC
Confidence            45678999999876 778888888765559999999998888776621      1 00011111   4444444333223


Q ss_pred             CCccEEEE-cc---C------ChhHHHHHHHHcccCCcEEEEE
Q 024295          155 MGVDYCFE-CT---G------VPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       155 ~~~d~v~d-~~---g------~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                       .||+|+- ..   +      ....+..+.+.|++| |.++.-
T Consensus       194 -~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~  234 (334)
T 1xj5_A          194 -SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQ  234 (334)
T ss_dssp             -CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEE
T ss_pred             -CccEEEECCCCccCcchhhhHHHHHHHHHHhcCCC-cEEEEe
Confidence             7999884 32   1      234678889999996 999875

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.81  E-value=0.0081  Score=47.22  Aligned_cols=37  Identities=22%  Similarity=0.351  Sum_probs=32.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchH
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKK  122 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~  122 (269)
                      ++++||+|+ |.+|.+.++.+...|+ +|+++++++++.
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~   40 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQ   40 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecCcccc
Confidence            568999986 8999999999988999 999999887653

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.81  E-value=0.0021  Score=51.14  Aligned_cols=76  Identities=18%  Similarity=0.200  Sum_probs=51.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhCCCce---eeCCCCCCCccHHHHHHhhhCCCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW--KKEKGKAFGMTD---FINPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~--~~~~~~~~g~~~---v~~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+..+++++  ..+.+++.|...   ..|-.+   ..-   +++.....++
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d---~~~---v~~~~~~g~i   80 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAPDETLDIIAKDGGNASALLIDFAD---PLA---AKDSFTDAGF   80 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTS---TTT---TTTSSTTTCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCC---HHH---HHHHHHhCCC
Confidence            5889999986 8999999999999999 9999998753  344556666432   223222   221   2222222389


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus        81 DiLVNNAGi   89 (247)
T 4hp8_A           81 DILVNNAGI   89 (247)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.81  E-value=0.0094  Score=47.36  Aligned_cols=73  Identities=21%  Similarity=0.176  Sum_probs=50.5

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           83 EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        83 ~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      .+++++||+|+ |.+|.+.++.+...|+ +|++++++++.   +++++...++ |- .   ++..+.+.+..   ++|++
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~---~~~~~~~~~~~D~-~---~~~~~~~~~~~---~iD~l   85 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEEL---LKRSGHRYVVCDL-R---KDLDLLFEKVK---EVDIL   85 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHH---HHHTCSEEEECCT-T---TCHHHHHHHSC---CCSEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHH---HHhhCCeEEEeeH-H---HHHHHHHHHhc---CCCEE
Confidence            35789999986 8999999998888999 99999988743   3344432222 22 2   34444343332   79999


Q ss_pred             EEccCC
Q 024295          161 FECTGV  166 (269)
Q Consensus       161 ~d~~g~  166 (269)
                      ++++|.
T Consensus        86 v~~Ag~   91 (249)
T 1o5i_A           86 VLNAGG   91 (249)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999873

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=96.80  E-value=0.0031  Score=49.75  Aligned_cols=79  Identities=11%  Similarity=0.193  Sum_probs=51.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCC--ce-eeCCCCCCCccHHHHHHhhhC-CCCcc
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGM--TD-FINPDDEPNKSISELVKGITH-GMGVD  158 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~--~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d  158 (269)
                      ++++||+|+ |++|.+.+..+...|+ +|+.+++++++.+.+.+ ++.  .. ..|-.+  .++..+.+.+... ..++|
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~id   79 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLGNAVIGIVADLAH--HEDVDVAFAAAVEWGGLPE   79 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTS--HHHHHHHHHHHHHHHCSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCceEEECCCCC--HHHHHHHHHHHHHhcCCCc
Confidence            578999986 8999999988888999 99999999877765543 332  11 223222  1222222222211 12799


Q ss_pred             EEEEccCC
Q 024295          159 YCFECTGV  166 (269)
Q Consensus       159 ~v~d~~g~  166 (269)
                      ++++++|.
T Consensus        80 ~lvnnAg~   87 (235)
T 3l6e_A           80 LVLHCAGT   87 (235)
T ss_dssp             EEEEECCC
T ss_pred             EEEECCCC
Confidence            99999874

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.80  E-value=0.014  Score=48.19  Aligned_cols=88  Identities=19%  Similarity=0.271  Sum_probs=61.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      .+|.|+|+|.+|...+..+...|. +|++.++++++.+.+++.|.. +.       .+..+.+.      ..|+|+.|+.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~~-------~~~~~~~~------~~DvVi~av~   95 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCDLFIQEGAR-LG-------RTPAEVVS------TCDITFACVS   95 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGHHHHHTTCE-EC-------SCHHHHHH------HCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHcCCE-Ec-------CCHHHHHh------cCCEEEEeCC
Confidence            579999999999998888888898 899999999988888777643 11       22323332      5789999998


Q ss_pred             ChhHHHHHHH-------HcccCCcEEEEEcc
Q 024295          166 VPSLLSEALE-------TTKVGKGKVIVIGV  189 (269)
Q Consensus       166 ~~~~~~~~~~-------~l~~~~G~~v~~g~  189 (269)
                      .+..+...+.       .+.++ ..++.++.
T Consensus        96 ~~~~~~~v~~~~~~~~~~l~~~-~~vv~~s~  125 (316)
T 2uyy_A           96 DPKAAKDLVLGPSGVLQGIRPG-KCYVDMST  125 (316)
T ss_dssp             SHHHHHHHHHSTTCGGGGCCTT-CEEEECSC
T ss_pred             CHHHHHHHHcCchhHhhcCCCC-CEEEECCC
Confidence            6555555553       34453 55555543

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.80  E-value=0.0061  Score=48.78  Aligned_cols=79  Identities=18%  Similarity=0.178  Sum_probs=51.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CC--Cce-eeCCCCCCCccHHHHHHhhh--CCCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FG--MTD-FINPDDEPNKSISELVKGIT--HGMG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g--~~~-v~~~~~~~~~~~~~~i~~~~--~~~~  156 (269)
                      .++++||+|+ |.+|.+.+..+...|+ +|+++++++++.+.+.+ +.  ... ..|-.+  .+.+.+.+.+..  -+ +
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d--~~~v~~~~~~~~~~~g-~   86 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVVAGLENGGFAVEVDVTK--RASVDAAMQKAIDALG-G   86 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCTTCCEEEECCTTC--HHHHHHHHHHHHHHHT-C
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCC--HHHHHHHHHHHHHHcC-C
Confidence            4688999986 8999999998888999 99999998877665433 32  221 123322  122322222221  12 7


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|++++++|.
T Consensus        87 iD~lv~~Ag~   96 (263)
T 3ak4_A           87 FDLLCANAGV   96 (263)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999873

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.79  E-value=0.0024  Score=51.47  Aligned_cols=80  Identities=9%  Similarity=0.040  Sum_probs=50.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce-eeCCCCCCCccHHHHHHhhhC-CCCccEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD-FINPDDEPNKSISELVKGITH-GMGVDYC  160 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d~v  160 (269)
                      .++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+....... ..|-.+  .+.+.+.+.+... -.++|++
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~iD~l   91 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKALNLPNTLCAQVDVTD--KYTFDTAITRAEKIYGPADAI   91 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTTCCTTEEEEECCTTC--HHHHHHHHHHHHHHHCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHhhcCCceEEEecCCC--HHHHHHHHHHHHHHCCCCCEE
Confidence            4688999986 8999999998888999 9999999877665443222111 223322  1222222222211 0279999


Q ss_pred             EEccCC
Q 024295          161 FECTGV  166 (269)
Q Consensus       161 ~d~~g~  166 (269)
                      ++++|.
T Consensus        92 vnnAg~   97 (266)
T 3p19_A           92 VNNAGM   97 (266)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999874

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.79  E-value=0.0052  Score=49.13  Aligned_cols=78  Identities=19%  Similarity=0.274  Sum_probs=51.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCce-e--eCCCCCCCccHHHHHHhh---h
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTD-F--INPDDEPNKSISELVKGI---T  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~---~  152 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    ..+... .  .|-.+  .++..+.+.+.   .
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   84 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS--RSERQELMNTVANHF   84 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4688999986 8999999998888999 9999999887655432    234321 1  23322  12233333222   2


Q ss_pred             CCCCccEEEEccC
Q 024295          153 HGMGVDYCFECTG  165 (269)
Q Consensus       153 ~~~~~d~v~d~~g  165 (269)
                      ++ ++|++++++|
T Consensus        85 ~g-~id~lv~~Ag   96 (260)
T 2ae2_A           85 HG-KLNILVNNAG   96 (260)
T ss_dssp             TT-CCCEEEECCC
T ss_pred             CC-CCCEEEECCC
Confidence            13 7999999987

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=96.79  E-value=0.0031  Score=50.43  Aligned_cols=98  Identities=13%  Similarity=-0.008  Sum_probs=62.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCc-------------------eeeCCCCCCC
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMT-------------------DFINPDDEPN  141 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~-------------------~v~~~~~~~~  141 (269)
                      .+++.+||.+|+|. |..+..+++. |+ +|+++|.+++..+.+++ .+..                   .-+....   
T Consensus        66 ~~~~~~vLD~GCG~-G~~~~~La~~-G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---  139 (252)
T 2gb4_A           66 GQSGLRVFFPLCGK-AIEMKWFADR-GH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYC---  139 (252)
T ss_dssp             TCCSCEEEETTCTT-CTHHHHHHHT-TC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEE---
T ss_pred             CCCCCeEEEeCCCC-cHHHHHHHHC-CC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEE---
Confidence            45788999999986 8888888875 88 99999999988888754 3210                   0000000   


Q ss_pred             ccHHHHHHhhhCCCCccEEEEccCC--------hhHHHHHHHHcccCCcEEEEEc
Q 024295          142 KSISELVKGITHGMGVDYCFECTGV--------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       142 ~~~~~~i~~~~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .++.+ + .......||+|++...-        ...+..+.+.|++| |+++++.
T Consensus       140 ~D~~~-l-~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG-G~l~l~~  191 (252)
T 2gb4_A          140 CSIFD-L-PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE-FQYLVAV  191 (252)
T ss_dssp             SCTTT-G-GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             Ccccc-C-CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC-eEEEEEE
Confidence            11110 0 01111389999974321        12467888999996 9986543

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.78  E-value=0.0057  Score=49.51  Aligned_cols=79  Identities=14%  Similarity=0.175  Sum_probs=52.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc-ee--eCCCCCCCccHHHHHHhhh--C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT-DF--INPDDEPNKSISELVKGIT--H  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v--~~~~~~~~~~~~~~i~~~~--~  153 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.    +.+.. ..  .|-.+  .++..+.+.+..  -
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~~  107 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQ--PDQVRGMLDQMTGEL  107 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            5789999986 8999999998888999 9999999887765543    23322 12  23322  122322232221  1


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      + ++|++++++|.
T Consensus       108 g-~iD~lvnnAg~  119 (276)
T 3r1i_A          108 G-GIDIAVCNAGI  119 (276)
T ss_dssp             S-CCSEEEECCCC
T ss_pred             C-CCCEEEECCCC
Confidence            2 79999999874

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.78  E-value=0.0043  Score=49.73  Aligned_cols=80  Identities=16%  Similarity=0.299  Sum_probs=51.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hC----CCc-ee--eCCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AF----GMT-DF--INPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~----g~~-~v--~~~~~~~~~~~~~~i~~~~~-  153 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. ++    +.. ..  .|-.+  .+.+.+.+.+... 
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVAT--PEGVDAVVESVRSS   82 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4688999986 8999999998888999 9999999887655432 22    432 12  23332  1223222222211 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      -.++|++++++|.
T Consensus        83 ~g~id~lv~~Ag~   95 (263)
T 3ai3_A           83 FGGADILVNNAGT   95 (263)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            0279999999873

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.78  E-value=0.0076  Score=46.69  Aligned_cols=97  Identities=12%  Similarity=0.133  Sum_probs=61.7

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      +|||+|+ |.+|...++.+...|+ +|++++|++++.+..  .+.. ++..+-   .+..+.+.+...  ++|+||+++|
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~--~~~~-~~~~D~---~d~~~~~~~~~~--~~d~vi~~ag   72 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY--NNVK-AVHFDV---DWTPEEMAKQLH--GMDAIINVSG   72 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC--TTEE-EEECCT---TSCHHHHHTTTT--TCSEEEECCC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc--CCce-EEEecc---cCCHHHHHHHHc--CCCEEEECCc
Confidence            5899986 9999999999988898 999999987655432  1222 222211   221334555443  7999999997


Q ss_pred             Chh---------HHHHHHHHcccC-CcEEEEEccCCC
Q 024295          166 VPS---------LLSEALETTKVG-KGKVIVIGVGVD  192 (269)
Q Consensus       166 ~~~---------~~~~~~~~l~~~-~G~~v~~g~~~~  192 (269)
                      ...         ....+++.++.. .++++.++....
T Consensus        73 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  109 (219)
T 3dqp_A           73 SGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFS  109 (219)
T ss_dssp             CTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred             CCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence            532         133444544442 258888876543

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.78  E-value=0.0042  Score=52.09  Aligned_cols=80  Identities=23%  Similarity=0.263  Sum_probs=51.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcch-----------HHHHHhCCCce---eeCCCCCCCccHHHHH
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWK-----------KEKGKAFGMTD---FINPDDEPNKSISELV  148 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~-----------~~~~~~~g~~~---v~~~~~~~~~~~~~~i  148 (269)
                      .++++||+|+ +++|.+.+..+...|+ +|+.+++++++           .+.++..|...   ..|-.+  .+.+.+.+
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d--~~~v~~~~  120 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRD--EQQISAAV  120 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHH
Confidence            5789999986 8999999998888899 99999988764           22234445322   223332  12222223


Q ss_pred             HhhhCC-CCccEEEEccCC
Q 024295          149 KGITHG-MGVDYCFECTGV  166 (269)
Q Consensus       149 ~~~~~~-~~~d~v~d~~g~  166 (269)
                      .+.... .++|++++++|.
T Consensus       121 ~~~~~~~g~iDilVnnAG~  139 (346)
T 3kvo_A          121 EKAIKKFGGIDILVNNASA  139 (346)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence            222110 279999999874

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.78  E-value=0.0031  Score=51.22  Aligned_cols=79  Identities=16%  Similarity=0.196  Sum_probs=52.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCce---eeCCCCCCCccHHHHHHhhh--CCCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTD---FINPDDEPNKSISELVKGIT--HGMG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~---v~~~~~~~~~~~~~~i~~~~--~~~~  156 (269)
                      .++++||+|+ +++|.+.+..+...|+ +|+.+++++++.+.+.+ ++...   ..|-.+  .++..+.+.+..  -+ +
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g-~   79 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVAHGGNAVGVVGDVRS--LQDQKRAAERCLAAFG-K   79 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTBTTEEEEECCTTC--HHHHHHHHHHHHHHHS-C
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHHHHHhcC-C
Confidence            4688999986 8999999999889999 99999999887766543 44321   123222  122222222221  12 7


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|++++++|.
T Consensus        80 iD~lvnnAg~   89 (281)
T 3zv4_A           80 IDTLIPNAGI   89 (281)
T ss_dssp             CCEEECCCCC
T ss_pred             CCEEEECCCc
Confidence            9999999873

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.78  E-value=0.0052  Score=49.40  Aligned_cols=77  Identities=16%  Similarity=0.119  Sum_probs=51.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hC--CCc-e--eeCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AF--GMT-D--FINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~--g~~-~--v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+.    ..  +.. .  ..|..+   .+..+.+.+.. 
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~-   83 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGT---EQGCQDVIEKY-   83 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTS---HHHHHHHHHHC-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCC---HHHHHHHHHhc-
Confidence            4688999986 8999999998888999 9999999887655432    22  221 1  123222   33333333322 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      + ++|++++++|.
T Consensus        84 g-~id~lv~nAg~   95 (267)
T 3t4x_A           84 P-KVDILINNLGI   95 (267)
T ss_dssp             C-CCSEEEECCCC
T ss_pred             C-CCCEEEECCCC
Confidence            2 79999999874

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.77  E-value=0.0056  Score=49.39  Aligned_cols=79  Identities=18%  Similarity=0.269  Sum_probs=51.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce---eeCCCCCCCccHHHHHHhh---h
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD---FINPDDEPNKSISELVKGI---T  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~---~  152 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+    ++.+...   ..|-.+  +++..+.+.+.   .
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   96 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS--RTERDKLMQTVAHVF   96 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4788999986 8999999999988999 999999988765543    2234321   223322  12222222222   2


Q ss_pred             CCCCccEEEEccCC
Q 024295          153 HGMGVDYCFECTGV  166 (269)
Q Consensus       153 ~~~~~d~v~d~~g~  166 (269)
                      ++ ++|++++++|.
T Consensus        97 ~g-~id~lv~nAg~  109 (273)
T 1ae1_A           97 DG-KLNILVNNAGV  109 (273)
T ss_dssp             TS-CCCEEEECCCC
T ss_pred             CC-CCcEEEECCCC
Confidence            13 79999999874

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.77  E-value=0.0025  Score=50.73  Aligned_cols=80  Identities=25%  Similarity=0.306  Sum_probs=52.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCc---eeeCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMT---DFINPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~---~v~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      +++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+.+ ++..   ...|-.+  .++..+.+.+... -.++
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i   84 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLGDNGKGMALNVTN--PESIEAVLKAITDEFGGV   84 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHHCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceEEEEeCCC--HHHHHHHHHHHHHHcCCC
Confidence            5788999986 8999999999999999 99999998877665533 3321   1223332  1223222322211 0279


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus        85 D~lv~nAg~   93 (248)
T 3op4_A           85 DILVNNAGI   93 (248)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=96.77  E-value=0.014  Score=48.37  Aligned_cols=130  Identities=16%  Similarity=0.176  Sum_probs=80.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHc-CCCeEE-EEcCCcchHHHH-HhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           87 SVAVLGLGTVGLGAVDGARMH-GAAKII-GIDKNPWKKEKG-KAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~-g~~~v~-~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      +|.|+|+|.+|...+..++.. +. +++ +.++++++.+.+ +++|..  +       .++.+.+.    ...+|+|+.|
T Consensus         5 ~vgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~~~~~~~~--~-------~~~~~~l~----~~~~D~V~i~   70 (331)
T 4hkt_A            5 RFGLLGAGRIGKVHAKAVSGNADA-RLVAVADAFPAAAEAIAGAYGCE--V-------RTIDAIEA----AADIDAVVIC   70 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTTCE--E-------CCHHHHHH----CTTCCEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCc-EEEEEECCCHHHHHHHHHHhCCC--c-------CCHHHHhc----CCCCCEEEEe
Confidence            688999999998777766654 66 665 567777776554 557755  2       33433333    2379999999


Q ss_pred             cCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          164 TGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       164 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      +....+.+.+..++..  |+-|++..+.. ...-....+.    .++..+.-....  .....+..+.+++.+|.+
T Consensus        71 tp~~~h~~~~~~al~~--gk~v~~EKP~~-~~~~~~~~l~~~a~~~g~~~~v~~~~--r~~p~~~~~~~~i~~g~i  141 (331)
T 4hkt_A           71 TPTDTHADLIERFARA--GKAIFCEKPID-LDAERVRACLKVVSDTKAKLMVGFNR--RFDPHFMAVRKAIDDGRI  141 (331)
T ss_dssp             SCGGGHHHHHHHHHHT--TCEEEECSCSC-SSHHHHHHHHHHHHHTTCCEEECCGG--GGCHHHHHHHHHHHTTTT
T ss_pred             CCchhHHHHHHHHHHc--CCcEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEcccc--cCCHHHHHHHHHHHcCCC
Confidence            9887777777777777  56677765532 1111111111    234444322211  123458888999999875

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.77  E-value=0.0047  Score=49.39  Aligned_cols=79  Identities=22%  Similarity=0.256  Sum_probs=51.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCc-ee--eCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMT-DF--INPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+ ++++.. .+  .|-.+  .+.+.+.+.+... -.++
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   87 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS--EKDVQTALALAKGKFGRV   87 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHHHHHCCCC
Confidence            4689999986 8999999999888999 999999988766654 334432 12  23222  1223333322211 0279


Q ss_pred             cEEEEccC
Q 024295          158 DYCFECTG  165 (269)
Q Consensus       158 d~v~d~~g  165 (269)
                      |++++++|
T Consensus        88 d~li~~Ag   95 (265)
T 2o23_A           88 DVAVNCAG   95 (265)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCc
Confidence            99999886

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.77  E-value=0.0038  Score=50.64  Aligned_cols=81  Identities=21%  Similarity=0.186  Sum_probs=51.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C---CCceeeCCCCCCCccHHHH-HHhhhC-CCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F---GMTDFINPDDEPNKSISEL-VKGITH-GMG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~---g~~~v~~~~~~~~~~~~~~-i~~~~~-~~~  156 (269)
                      .++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+.+ +   +....+-.-+.++.+..+. +.+... -.+
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   85 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGG   85 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5788999986 8999999998888999 99999999877665432 2   3222111111111322222 222211 027


Q ss_pred             ccEEEEccC
Q 024295          157 VDYCFECTG  165 (269)
Q Consensus       157 ~d~v~d~~g  165 (269)
                      +|++++++|
T Consensus        86 iD~lvnnAg   94 (280)
T 3tox_A           86 LDTAFNNAG   94 (280)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=96.77  E-value=0.0055  Score=49.55  Aligned_cols=80  Identities=19%  Similarity=0.162  Sum_probs=52.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCce---eeCCCCCCCccHHHHHHhhhCCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTD---FINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      .++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+.    ..+...   ..|-.+  .....+.+.+.....
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~g  108 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSE--AGAGTDLIERAEAIA  108 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTS--TTHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCC--HHHHHHHHHHHHHhC
Confidence            5789999986 8999999999888999 9999999887655442    234321   123222  223333332221112


Q ss_pred             CccEEEEccCC
Q 024295          156 GVDYCFECTGV  166 (269)
Q Consensus       156 ~~d~v~d~~g~  166 (269)
                      ++|++++++|.
T Consensus       109 ~iD~lvnnAg~  119 (275)
T 4imr_A          109 PVDILVINASA  119 (275)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=96.76  E-value=0.0095  Score=44.00  Aligned_cols=101  Identities=19%  Similarity=0.160  Sum_probs=63.3

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      .++++.+||.+|+|. |..+..+++..|. .++++++.++ ..+.    ....++..+- ......+.+....+...||+
T Consensus        19 ~~~~~~~vLd~G~G~-G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----~~~~~~~~d~-~~~~~~~~~~~~~~~~~~D~   91 (180)
T 1ej0_A           19 LFKPGMTVVDLGAAP-GGWSQYVVTQIGGKGRIIACDLLP-MDPI----VGVDFLQGDF-RDELVMKALLERVGDSKVQV   91 (180)
T ss_dssp             CCCTTCEEEEESCTT-CHHHHHHHHHHCTTCEEEEEESSC-CCCC----TTEEEEESCT-TSHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCCCeEEEeCCCC-CHHHHHHHHHhCCCCeEEEEECcc-cccc----CcEEEEEccc-ccchhhhhhhccCCCCceeE
Confidence            367889999999987 8888888888643 3999999876 3221    2112222111 01222223333233348999


Q ss_pred             EEEc-----cCC------------hhHHHHHHHHcccCCcEEEEEcc
Q 024295          160 CFEC-----TGV------------PSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       160 v~d~-----~g~------------~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      |+..     .+.            ...+..+.+.++++ |+++....
T Consensus        92 i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  137 (180)
T 1ej0_A           92 VMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG-GSFVVKVF  137 (180)
T ss_dssp             EEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             EEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            9862     222            24678888999996 99887654

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.76  E-value=0.0033  Score=49.68  Aligned_cols=79  Identities=23%  Similarity=0.288  Sum_probs=52.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcC--CCeEEEEcCCcchHHHHHhC-CCc-ee--eCCCCCCCccHHHHHHhh---hCC
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHG--AAKIIGIDKNPWKKEKGKAF-GMT-DF--INPDDEPNKSISELVKGI---THG  154 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g--~~~v~~~~~~~~~~~~~~~~-g~~-~v--~~~~~~~~~~~~~~i~~~---~~~  154 (269)
                      ++++||+|+ |.+|.+.++.+...|  + +|+++++++++.+.++++ +.. .+  .|-.+  .+.+.+.+.+.   .+.
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~   79 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKATELKSIKDSRVHVLPLTVTC--DKSLDTFVSKVGEIVGS   79 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGCHHHHTCCCTTEEEEECCTTC--HHHHHHHHHHHHHHHGG
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCc-EEEEEecCHHHHHHHHhccCCceEEEEeecCC--HHHHHHHHHHHHHhcCC
Confidence            578999986 999999999888889  7 999999998877776655 221 12  23222  12222222222   221


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus        80 ~~id~li~~Ag~   91 (250)
T 1yo6_A           80 DGLSLLINNAGV   91 (250)
T ss_dssp             GCCCEEEECCCC
T ss_pred             CCCcEEEECCcc
Confidence            269999998863

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=96.76  E-value=0.0053  Score=48.64  Aligned_cols=75  Identities=9%  Similarity=0.042  Sum_probs=51.2

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEE-c--CCcchHHHHH-hC-CCceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGI-D--KNPWKKEKGK-AF-GMTDFINPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~-~--~~~~~~~~~~-~~-g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      ++++||+|+ |.+|.+.++.+...|+ +|+++ +  +++++.+.+. ++ +.+ +.+..+  ...+.+.+.+.. + ++|
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~--v~~~~~~~~~~~-g-~iD   74 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGY-TVVCHDASFADAAERQRFESENPGTI-ALAEQK--PERLVDATLQHG-E-AID   74 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHSTTEE-ECCCCC--GGGHHHHHGGGS-S-CEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCcCCHHHHHHHHHHhCCCc-ccCHHH--HHHHHHHHHHHc-C-CCC
Confidence            367899986 8999999999888999 99999 6  8887766543 34 332 333322  233444444432 2 799


Q ss_pred             EEEEccC
Q 024295          159 YCFECTG  165 (269)
Q Consensus       159 ~v~d~~g  165 (269)
                      ++++++|
T Consensus        75 ~lv~~Ag   81 (244)
T 1zmo_A           75 TIVSNDY   81 (244)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.76  E-value=0.0076  Score=49.94  Aligned_cols=89  Identities=12%  Similarity=0.186  Sum_probs=63.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcC-CcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDK-NPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~-~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      .+++|.|+|.|.+|...++.++..|. +|++.++ ++++ ..++++|+.. .       .++.+.+.      ..|+|+-
T Consensus       145 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~-~-------~~l~ell~------~aDvVil  208 (320)
T 1gdh_A          145 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASS-SDEASYQATF-H-------DSLDSLLS------VSQFFSL  208 (320)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCH-HHHHHHTCEE-C-------SSHHHHHH------HCSEEEE
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcCh-hhhhhcCcEE-c-------CCHHHHHh------hCCEEEE
Confidence            57899999999999999999999999 9999998 7765 3555667542 1       12333332      5789988


Q ss_pred             ccCChh----HH-HHHHHHcccCCcEEEEEcc
Q 024295          163 CTGVPS----LL-SEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       163 ~~g~~~----~~-~~~~~~l~~~~G~~v~~g~  189 (269)
                      ++...+    .+ ...+..++++ +.++.++.
T Consensus       209 ~~p~~~~t~~~i~~~~l~~mk~g-ailIn~ar  239 (320)
T 1gdh_A          209 NAPSTPETRYFFNKATIKSLPQG-AIVVNTAR  239 (320)
T ss_dssp             CCCCCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred             eccCchHHHhhcCHHHHhhCCCC-cEEEECCC
Confidence            875322    12 3466788885 88888875

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=96.76  E-value=0.018  Score=47.01  Aligned_cols=105  Identities=20%  Similarity=0.208  Sum_probs=62.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc--hHHHH----HhCCCceeeCCCCCCCccHHH-HH---Hhhh
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW--KKEKG----KAFGMTDFINPDDEPNKSISE-LV---KGIT  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~--~~~~~----~~~g~~~v~~~~~~~~~~~~~-~i---~~~~  152 (269)
                      +++++||+|+ |++|.+.+..+...|+ +|+.++++.+  +.+.+    ++.+....+-.-+.++.+..+ .+   .+..
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  126 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL  126 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            5789999986 8999999998889999 8998887632  22222    334533222111111122222 22   2222


Q ss_pred             CCCCccEEEEccCChh--------------------------HHHHHHHHcccCCcEEEEEccCCC
Q 024295          153 HGMGVDYCFECTGVPS--------------------------LLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       153 ~~~~~d~v~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                       + ++|+++++.|...                          ..+.++..++.+ |+++.++....
T Consensus       127 -g-~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-g~Iv~isS~~~  189 (294)
T 3r3s_A          127 -G-GLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKG-ASIITTSSIQA  189 (294)
T ss_dssp             -T-CCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTT-CEEEEECCGGG
T ss_pred             -C-CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcC-CEEEEECChhh
Confidence             2 7999999887410                          123344456665 99999976543

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.75  E-value=0.0052  Score=50.39  Aligned_cols=80  Identities=20%  Similarity=0.265  Sum_probs=52.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc-e--eeCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT-D--FINPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~--v~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |++|.+.+..+...|+ +|+.+++++++.+.+.    ..+.. .  ..|-.+  .+...+.+.+... .
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRH--LDEMVRLADEAFRLL  106 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHhC
Confidence            5789999986 8999999998888999 9999999987766543    23432 1  223322  1222222222211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus       107 g~id~lvnnAg~  118 (301)
T 3tjr_A          107 GGVDVVFSNAGI  118 (301)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            279999999873

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=96.74  E-value=0.0092  Score=46.18  Aligned_cols=100  Identities=20%  Similarity=0.213  Sum_probs=67.3

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHh-hhCCCCcc
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKG-ITHGMGVD  158 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~-~~~~~~~d  158 (269)
                      ....++.+||-+|+|. |..+..+++. |. ++++++.+++..+.+++.+...+..      .++.+.... ...+..||
T Consensus        48 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~~~~~fD  118 (227)
T 3e8s_A           48 ILGRQPERVLDLGCGE-GWLLRALADR-GI-EAVGVDGDRTLVDAARAAGAGEVHL------ASYAQLAEAKVPVGKDYD  118 (227)
T ss_dssp             HHHTCCSEEEEETCTT-CHHHHHHHTT-TC-EEEEEESCHHHHHHHHHTCSSCEEE------CCHHHHHTTCSCCCCCEE
T ss_pred             hhcCCCCEEEEeCCCC-CHHHHHHHHC-CC-EEEEEcCCHHHHHHHHHhcccccch------hhHHhhcccccccCCCcc
Confidence            3445679999999876 7777777776 77 9999999999898888874332322      222221111 12333599


Q ss_pred             EEEEccC-----ChhHHHHHHHHcccCCcEEEEEcc
Q 024295          159 YCFECTG-----VPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       159 ~v~d~~g-----~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      +|+-...     ....+..+.+.+++| |+++....
T Consensus       119 ~v~~~~~l~~~~~~~~l~~~~~~L~pg-G~l~~~~~  153 (227)
T 3e8s_A          119 LICANFALLHQDIIELLSAMRTLLVPG-GALVIQTL  153 (227)
T ss_dssp             EEEEESCCCSSCCHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred             EEEECchhhhhhHHHHHHHHHHHhCCC-eEEEEEec
Confidence            9976432     234688999999996 99887653

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.74  E-value=0.0054  Score=49.24  Aligned_cols=80  Identities=18%  Similarity=0.208  Sum_probs=52.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCc-ee--eCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMT-DF--INPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.+ ++.. ..  .|-.+  .++..+.+.+... -.++
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   81 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSD--PKAVEAVFAEALEEFGRL   81 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTS--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC--HHHHHHHHHHHHHHcCCC
Confidence            4688999986 8999999998888999 99999999877665533 4321 11  23322  1222222322211 1279


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus        82 D~lvnnAg~   90 (263)
T 2a4k_A           82 HGVAHFAGV   90 (263)
T ss_dssp             CEEEEGGGG
T ss_pred             cEEEECCCC
Confidence            999999863

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.74  E-value=0.0077  Score=47.47  Aligned_cols=74  Identities=18%  Similarity=0.277  Sum_probs=49.6

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCcee-eCCCCCCCccHHHHHH---hhhCCCCccE
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF-INPDDEPNKSISELVK---GITHGMGVDY  159 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~---~~~~~~~~d~  159 (269)
                      ++++||+|+ |.+|.+.++.+...|+ +|+.+++++++  ..++++...+ .|-.+   ++..+.+.   +.. + ++|+
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~-~V~~~~r~~~~--~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~-g-~id~   73 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGY-RVAIASRNPEE--AAQSLGAVPLPTDLEK---DDPKGLVKRALEAL-G-GLHV   73 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH--HHHHHTCEEEECCTTT---SCHHHHHHHHHHHH-T-SCCE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH--HHHhhCcEEEecCCch---HHHHHHHHHHHHHc-C-CCCE
Confidence            578999986 8999999999888999 99999988765  3344453222 22222   33333332   222 2 7999


Q ss_pred             EEEccCC
Q 024295          160 CFECTGV  166 (269)
Q Consensus       160 v~d~~g~  166 (269)
                      ++++.|.
T Consensus        74 lv~~Ag~   80 (239)
T 2ekp_A           74 LVHAAAV   80 (239)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9998873

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=96.74  E-value=0.0078  Score=48.24  Aligned_cols=80  Identities=11%  Similarity=0.082  Sum_probs=48.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcch---HHHH----HhCCCce---eeCCCCCCCccHHHHHHhhh
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWK---KEKG----KAFGMTD---FINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~---~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~  152 (269)
                      .++++||+|+ +++|.+.++.+...|+ +|+.++++...   .+.+    +..+...   ..|-.+  .+...+.+.+..
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~   86 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSN--EEEVAKLFDFAE   86 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCS--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHH
Confidence            5789999986 8999999998888999 89988765433   2222    2234322   123322  122222222221


Q ss_pred             C-CCCccEEEEccCC
Q 024295          153 H-GMGVDYCFECTGV  166 (269)
Q Consensus       153 ~-~~~~d~v~d~~g~  166 (269)
                      . -.++|++++++|.
T Consensus        87 ~~~g~iD~lvnnAg~  101 (262)
T 3ksu_A           87 KEFGKVDIAINTVGK  101 (262)
T ss_dssp             HHHCSEEEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence            1 0279999999873

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.74  E-value=0.004  Score=50.89  Aligned_cols=80  Identities=19%  Similarity=0.190  Sum_probs=51.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C---C--Ccee--eCCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F---G--MTDF--INPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~---g--~~~v--~~~~~~~~~~~~~~i~~~~~-  153 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.+ +   +  ....  .|-.+  .+...+.+.+... 
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  116 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSD--PGSCADAARTVVDA  116 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCC--HHHHHHHHHHHHHH
Confidence            5788999986 8999999999889999 99999999877665432 2   2  1112  23322  1222222222211 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      -.++|++++++|.
T Consensus       117 ~g~iD~lvnnAg~  129 (293)
T 3rih_A          117 FGALDVVCANAGI  129 (293)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1279999999873

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.74  E-value=0.0054  Score=48.10  Aligned_cols=79  Identities=9%  Similarity=0.040  Sum_probs=50.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCC-Cce-eeCCCCCCCccHHHHHHhhhC-CCCccE
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFG-MTD-FINPDDEPNKSISELVKGITH-GMGVDY  159 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g-~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d~  159 (269)
                      ++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. +++ ... ..|-.+  .+++.+.+.+... -.++|+
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   81 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGY-RVGLMARDEKRLQALAAELEGALPLPGDVRE--EGDWARAVAAMEEAFGELSA   81 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC--HHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhhceEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            568999986 9999999998888999 9999999887766543 343 221 123322  1223222222211 027999


Q ss_pred             EEEccCC
Q 024295          160 CFECTGV  166 (269)
Q Consensus       160 v~d~~g~  166 (269)
                      +++++|.
T Consensus        82 li~~Ag~   88 (234)
T 2ehd_A           82 LVNNAGV   88 (234)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999873

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.74  E-value=0.0068  Score=48.09  Aligned_cols=80  Identities=16%  Similarity=0.215  Sum_probs=51.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT-DF--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.    ..+.. ..  .|-.+  ++...+.+.+... -
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKVHVLELDVAD--RQGVDAAVASTVEAL   82 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4688999986 8999999998888999 9999999887665442    22432 12  23322  1222222222211 0


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus        83 g~id~lv~nAg~   94 (247)
T 2jah_A           83 GGLDILVNNAGI   94 (247)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999998873

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.74  E-value=0.0045  Score=49.20  Aligned_cols=80  Identities=20%  Similarity=0.197  Sum_probs=51.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DF--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.+    .+.. ..  .|-.+  .++..+.+.+... -
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSD--PESAKAMADRTLAEF   84 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            5789999986 8999999999888999 89999999877665432    2332 12  23222  1222222222211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus        85 g~id~li~~Ag~   96 (253)
T 3qiv_A           85 GGIDYLVNNAAI   96 (253)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            279999999874

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=96.73  E-value=0.0041  Score=49.62  Aligned_cols=76  Identities=17%  Similarity=0.103  Sum_probs=49.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---CCCc-eeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA---FGMT-DFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~---~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      +++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.+   .+.+ ..++..+  ...+.+.+.+.. + ++|++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~d~~~--v~~~~~~~~~~~-g-~iD~l   76 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMSEQE--PAELIEAVTSAY-G-QVDVL   76 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECCCCS--HHHHHHHHHHHH-S-CCCEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCcEEEECHHH--HHHHHHHHHHHh-C-CCCEE
Confidence            46899986 8999999999988999 99999998876655432   2432 2222211  122333333333 2 79999


Q ss_pred             EEccCC
Q 024295          161 FECTGV  166 (269)
Q Consensus       161 ~d~~g~  166 (269)
                      ++++|.
T Consensus        77 v~nAg~   82 (254)
T 1zmt_A           77 VSNDIF   82 (254)
T ss_dssp             EEECCC
T ss_pred             EECCCc
Confidence            999874

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=96.73  E-value=0.0019  Score=50.53  Aligned_cols=97  Identities=16%  Similarity=0.127  Sum_probs=67.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC-CceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG-MTDFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      +.++.+||-+|+|. |..+..+++. +. +|++++.+++..+.+++.. ...++..+-   .+   .+ .......||+|
T Consensus        46 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~---~~---~~-~~~~~~~fD~v  115 (226)
T 3m33_A           46 LTPQTRVLEAGCGH-GPDAARFGPQ-AA-RWAAYDFSPELLKLARANAPHADVYEWNG---KG---EL-PAGLGAPFGLI  115 (226)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHCTTSEEEECCS---CS---SC-CTTCCCCEEEE
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHc-CC-EEEEEECCHHHHHHHHHhCCCceEEEcch---hh---cc-CCcCCCCEEEE
Confidence            46789999999986 8888888777 77 9999999999888887742 122222111   00   00 01102389999


Q ss_pred             EEccCChhHHHHHHHHcccCCcEEEEEcc
Q 024295          161 FECTGVPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       161 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      +........+..+.+.+++| |+++..+.
T Consensus       116 ~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  143 (226)
T 3m33_A          116 VSRRGPTSVILRLPELAAPD-AHFLYVGP  143 (226)
T ss_dssp             EEESCCSGGGGGHHHHEEEE-EEEEEEES
T ss_pred             EeCCCHHHHHHHHHHHcCCC-cEEEEeCC
Confidence            98766666788999999996 99985543

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=96.73  E-value=0.01  Score=48.30  Aligned_cols=96  Identities=16%  Similarity=0.165  Sum_probs=66.1

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC---ceeeCCCCCCCccHHHHHHhhhC
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM---TDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~---~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .+.++.+||-+|+|. |..+..+++..|. +|++++.+++..+.+++    .|.   ..++..+-   .++     .. .
T Consensus        79 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~-----~~-~  147 (297)
T 2o57_A           79 VLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF---LEI-----PC-E  147 (297)
T ss_dssp             CCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT---TSC-----SS-C
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc---ccC-----CC-C
Confidence            778999999999985 8888888888888 99999999887777654    232   12221111   110     01 1


Q ss_pred             CCCccEEEEccCC------hhHHHHHHHHcccCCcEEEEEc
Q 024295          154 GMGVDYCFECTGV------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       154 ~~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ...||+|+-.-.-      ...+..+.+.|++| |+++...
T Consensus       148 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  187 (297)
T 2o57_A          148 DNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITD  187 (297)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CCCEeEEEecchhhhcCCHHHHHHHHHHHcCCC-eEEEEEE
Confidence            2379999854321      33588899999996 9988775

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=96.73  E-value=0.0035  Score=50.13  Aligned_cols=67  Identities=18%  Similarity=0.222  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      ++ +++|+|+|++|.+++..+...|+++|++++|++++.+.+.+ ++.   ...     .+..+.+.      ++|+|++
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~---~~~-----~~~~~~~~------~aDiVIn  172 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKI---FSL-----DQLDEVVK------KAKSLFN  172 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEE---EEG-----GGHHHHHH------TCSEEEE
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHccc---CCH-----HHHHhhhc------CCCEEEE
Confidence            46 99999999999999999999998899999999877665433 221   111     22322222      6899999


Q ss_pred             ccC
Q 024295          163 CTG  165 (269)
Q Consensus       163 ~~g  165 (269)
                      |+.
T Consensus       173 atp  175 (253)
T 3u62_A          173 TTS  175 (253)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            884

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.73  E-value=0.0036  Score=50.69  Aligned_cols=80  Identities=16%  Similarity=0.172  Sum_probs=52.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCc-ee--eCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMT-DF--INPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+ ++.. ..  .|-.+  .+.+.+.+.+... ..++
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~g~i   80 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAYPDRAEAISLDVTD--GERIDVVAADVLARYGRV   80 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHCTTTEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCceEEEeeCCC--HHHHHHHHHHHHHhCCCC
Confidence            4678999986 8999999999888999 99999999887766543 4422 12  23322  1222222222211 1279


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus        81 d~lv~~Ag~   89 (281)
T 3m1a_A           81 DVLVNNAGR   89 (281)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999874

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.72  E-value=0.0035  Score=50.47  Aligned_cols=80  Identities=20%  Similarity=0.247  Sum_probs=51.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCce---eeCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTD---FINPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      .++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+.    +.+...   ..|-.+  .+...+.+.+... -
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGGTALAQVLDVTD--RHSVAAFAQAAVDTW   79 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4678999986 8999999998888999 9999999987766543    234322   123332  1222222222211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus        80 g~iD~lVnnAG~   91 (264)
T 3tfo_A           80 GRIDVLVNNAGV   91 (264)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999999874

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=96.72  E-value=0.022  Score=46.76  Aligned_cols=88  Identities=16%  Similarity=0.097  Sum_probs=62.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      ..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|... .       .+..+.+.      ..|+||-++
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~-------~~~~e~~~------~aDvVi~~v   73 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSPGKAAALVAAGAHL-C-------ESVKAALS------ASPATIFVL   73 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTCEE-C-------SSHHHHHH------HSSEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCee-c-------CCHHHHHh------cCCEEEEEe
Confidence            4679999999999999888888899 9999999999988887777532 1       23333332      468999998


Q ss_pred             CChhHHHHHHH-----HcccCCcEEEEEc
Q 024295          165 GVPSLLSEALE-----TTKVGKGKVIVIG  188 (269)
Q Consensus       165 g~~~~~~~~~~-----~l~~~~G~~v~~g  188 (269)
                      ..+..+...+.     .+.++ ..++.++
T Consensus        74 p~~~~~~~v~~~~~l~~~~~g-~ivid~s  101 (306)
T 3l6d_A           74 LDNHATHEVLGMPGVARALAH-RTIVDYT  101 (306)
T ss_dssp             SSHHHHHHHHTSTTHHHHTTT-CEEEECC
T ss_pred             CCHHHHHHHhcccchhhccCC-CEEEECC
Confidence            77654454442     33453 5555554

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=96.71  E-value=0.00065  Score=54.21  Aligned_cols=98  Identities=20%  Similarity=0.133  Sum_probs=67.7

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccHHHHHHhh
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~~~  151 (269)
                      ...+.++.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++    .|..   .++..+-   .++     . 
T Consensus        41 l~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~-----~-  109 (257)
T 3f4k_A           41 INELTDDAKIADIGCGT-GGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSM---DNL-----P-  109 (257)
T ss_dssp             SCCCCTTCEEEEETCTT-SHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSC-----S-
T ss_pred             HhcCCCCCeEEEeCCCC-CHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---hhC-----C-
Confidence            34678899999999986 9999999999887 99999999988777654    3321   1221111   111     0 


Q ss_pred             hCCCCccEEEEc-----cCChhHHHHHHHHcccCCcEEEEEc
Q 024295          152 THGMGVDYCFEC-----TGVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       152 ~~~~~~d~v~d~-----~g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .....||+|+-.     .+....+..+.+.+++| |+++...
T Consensus       110 ~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pg-G~l~~~~  150 (257)
T 3f4k_A          110 FQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKG-GFIAVSE  150 (257)
T ss_dssp             SCTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEE-EEEEEEE
T ss_pred             CCCCCEEEEEecChHhhcCHHHHHHHHHHHcCCC-cEEEEEE
Confidence            122389999642     23344678889999996 9988775

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.71  E-value=0.0051  Score=49.47  Aligned_cols=79  Identities=16%  Similarity=0.380  Sum_probs=51.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-----hCCCce-e--eCCCCCCCccHHHHHHhhh--
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-----AFGMTD-F--INPDDEPNKSISELVKGIT--  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-----~~g~~~-v--~~~~~~~~~~~~~~i~~~~--  152 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.     ..+... .  .|-.+  ++.+.+.+.+..  
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~   96 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN--YEEVKKLLEAVKEK   96 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5788999986 8999999999888999 9999999877655432     224321 1  23332  122322222221  


Q ss_pred             CCCCccEEEEccCC
Q 024295          153 HGMGVDYCFECTGV  166 (269)
Q Consensus       153 ~~~~~d~v~d~~g~  166 (269)
                      -+ ++|++++++|.
T Consensus        97 ~g-~iD~lvnnAg~  109 (267)
T 1vl8_A           97 FG-KLDTVVNAAGI  109 (267)
T ss_dssp             HS-CCCEEEECCCC
T ss_pred             cC-CCCEEEECCCc
Confidence            12 79999999874

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.71  E-value=0.0041  Score=49.73  Aligned_cols=79  Identities=18%  Similarity=0.209  Sum_probs=51.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DF--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+.+    .+.. ..  .|-.+  .++..+.+.+... -
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRN--TDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4688999986 8999999999888999 99999999877666533    2322 12  23322  1222222222211 0


Q ss_pred             CCccEEEEccC
Q 024295          155 MGVDYCFECTG  165 (269)
Q Consensus       155 ~~~d~v~d~~g  165 (269)
                      .++|++++++|
T Consensus        82 g~id~lv~nAg   92 (257)
T 3imf_A           82 GRIDILINNAA   92 (257)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            27999999987

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.70  E-value=0.0056  Score=48.77  Aligned_cols=82  Identities=17%  Similarity=0.144  Sum_probs=51.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C----C--Cce-eeCCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F----G--MTD-FINPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~----g--~~~-v~~~~~~~~~~~~~~i~~~~~-  153 (269)
                      +++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+.+ +    +  ... ..|-...+.++..+.+.+... 
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            5789999986 8999999998888999 99999999877655422 1    1  221 223210011222222222211 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      ..++|++++++|.
T Consensus        90 ~g~id~lv~nAg~  102 (252)
T 3f1l_A           90 YPRLDGVLHNAGL  102 (252)
T ss_dssp             CSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            1279999999874

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=96.70  E-value=0.0043  Score=51.65  Aligned_cols=89  Identities=20%  Similarity=0.325  Sum_probs=61.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .|++|.|+|.|.+|...++.++..|. +|++.++++++.+..+++|...         .++.+.+.      ..|+|+-+
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~---------~~l~ell~------~aDvV~l~  207 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALDTQTEQRLGLRQ---------VACSELFA------SSDFILLA  207 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSCCCHHHHHHHTEEE---------CCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCCCcHhHHHhcCcee---------CCHHHHHh------hCCEEEEc
Confidence            47899999999999999999999999 9999998876666666666421         12222222      45777777


Q ss_pred             cCChh----H-HHHHHHHcccCCcEEEEEcc
Q 024295          164 TGVPS----L-LSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       164 ~g~~~----~-~~~~~~~l~~~~G~~v~~g~  189 (269)
                      +...+    . -...+..++++ ..++.++.
T Consensus       208 ~P~t~~t~~li~~~~l~~mk~g-ailIN~ar  237 (330)
T 4e5n_A          208 LPLNADTLHLVNAELLALVRPG-ALLVNPCR  237 (330)
T ss_dssp             CCCSTTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred             CCCCHHHHHHhCHHHHhhCCCC-cEEEECCC
Confidence            64211    1 23566777775 77777764

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=96.70  E-value=0.01  Score=49.56  Aligned_cols=132  Identities=16%  Similarity=0.174  Sum_probs=79.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHc-CCCeEE-EEcCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           87 SVAVLGLGTVGLGAVDGARMH-GAAKII-GIDKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~-g~~~v~-~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      +|.|+|+|.+|...+..++.. +. +++ +.++++++.+. ++++|...++       .++.+.+.    ...+|+|+.|
T Consensus         4 rvgiIG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~~~~~~~~~~~-------~~~~~ll~----~~~~D~V~i~   71 (344)
T 3ezy_A            4 RIGVIGLGRIGTIHAENLKMIDDA-ILYAISDVREDRLREMKEKLGVEKAY-------KDPHELIE----DPNVDAVLVC   71 (344)
T ss_dssp             EEEEECCSHHHHHHHHHGGGSTTE-EEEEEECSCHHHHHHHHHHHTCSEEE-------SSHHHHHH----CTTCCEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHHhCCCcee-------CCHHHHhc----CCCCCEEEEc
Confidence            588999999998766655544 56 665 45777777655 4557755444       33433333    2379999999


Q ss_pred             cCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          164 TGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       164 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      +....+...+..++..  |+-|++..+.... .-....+.    .++..+.-....  .....+..+.+++.+|.+
T Consensus        72 tp~~~h~~~~~~al~~--gk~v~~EKP~~~~-~~e~~~l~~~a~~~g~~~~v~~~~--R~~p~~~~~k~~i~~G~i  142 (344)
T 3ezy_A           72 SSTNTHSELVIACAKA--KKHVFCEKPLSLN-LADVDRMIEETKKADVILFTGFNR--RFDRNFKKLKEAVENGTI  142 (344)
T ss_dssp             SCGGGHHHHHHHHHHT--TCEEEEESCSCSC-HHHHHHHHHHHHHHTCCEEEECGG--GGCHHHHHHHHHHHTTTT
T ss_pred             CCCcchHHHHHHHHhc--CCeEEEECCCCCC-HHHHHHHHHHHHHhCCcEEEeecc--cCCHHHHHHHHHHHcCCC
Confidence            9887777777777777  5666676543211 11111121    234433322211  123458888899999875

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=96.70  E-value=0.003  Score=51.19  Aligned_cols=80  Identities=20%  Similarity=0.265  Sum_probs=52.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCc-ee--eCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMT-DF--INPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. +++.. ..  .|-.+  .++..+.+.+... -.++
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i  104 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIGCGAAACRVDVSD--EQQIIAMVDACVAAFGGV  104 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCSSCEEEECCTTC--HHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCcceEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            5788999986 8999999998888899 9999999987766543 34422 12  23332  1222222222211 1279


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus       105 D~lvnnAg~  113 (277)
T 3gvc_A          105 DKLVANAGV  113 (277)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=96.70  E-value=0.0043  Score=49.85  Aligned_cols=79  Identities=20%  Similarity=0.165  Sum_probs=50.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C-----CCc-ee--eCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F-----GMT-DF--INPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~-----g~~-~v--~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+ +     +.. ..  .|-.+  .+.+.+.+.+...
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   88 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD--EAQVEAYVTATTE   88 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCC--HHHHHHHHHHHHH
Confidence            4688999986 8999999998888899 99999998876654321 1     322 12  23332  1223333322211


Q ss_pred             -CCCccEEEEccC
Q 024295          154 -GMGVDYCFECTG  165 (269)
Q Consensus       154 -~~~~d~v~d~~g  165 (269)
                       -.++|++++++|
T Consensus        89 ~~g~id~lv~nAg  101 (267)
T 1iy8_A           89 RFGRIDGFFNNAG  101 (267)
T ss_dssp             HHSCCSEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence             027999999986

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.70  E-value=0.017  Score=47.75  Aligned_cols=91  Identities=20%  Similarity=0.234  Sum_probs=63.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhCCCc-eeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAA-KIIGIDKNPWKKEKGKAFGMT-DFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~-~v~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+|.|+|.|.+|.+.++.++..|.. +|++.++++++.+.+++.|.. ......+    +.  .+      ...|+||.|
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~----~~--~~------~~aDvVila  101 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIA----KV--ED------FSPDFVMLS  101 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTT----GG--GG------GCCSEEEEC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHH----HH--hh------ccCCEEEEe
Confidence            6899999999999999988888864 899999999999999888852 2332211    10  11      168999999


Q ss_pred             cCChh---HHHHHHHHcccCCcEEEEEcc
Q 024295          164 TGVPS---LLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       164 ~g~~~---~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      +....   .+..+...++++ ..++.++.
T Consensus       102 vp~~~~~~vl~~l~~~l~~~-~iv~d~~S  129 (314)
T 3ggo_A          102 SPVRTFREIAKKLSYILSED-ATVTDQGS  129 (314)
T ss_dssp             SCGGGHHHHHHHHHHHSCTT-CEEEECCS
T ss_pred             CCHHHHHHHHHHHhhccCCC-cEEEECCC
Confidence            97542   233445556674 66666554

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.70  E-value=0.0051  Score=47.98  Aligned_cols=88  Identities=16%  Similarity=0.175  Sum_probs=57.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.++++++             .|-.+  ++...+.+.++  + ++|++++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~-------------~D~~~--~~~v~~~~~~~--g-~id~lv~   65 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHT-IVHVASRQTG-------------LDISD--EKSVYHYFETI--G-AFDHLIV   65 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTE-EEEEESGGGT-------------CCTTC--HHHHHHHHHHH--C-SEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEecCCcc-------------cCCCC--HHHHHHHHHHh--C-CCCEEEE
Confidence            4678999986 8999999988888899 9999987654             22222  12233333332  3 7899998


Q ss_pred             ccCCh-----------h---------------HHHHHHHHcccCCcEEEEEccCC
Q 024295          163 CTGVP-----------S---------------LLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       163 ~~g~~-----------~---------------~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      ++|..           .               ..+.++..++++ |+++.++...
T Consensus        66 nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~~sS~~  119 (223)
T 3uce_A           66 TAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQG-GSITLTSGML  119 (223)
T ss_dssp             CCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEE-EEEEEECCGG
T ss_pred             CCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCC-eEEEEecchh
Confidence            88732           0               123344455664 8999987544

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.69  E-value=0.0041  Score=49.98  Aligned_cols=80  Identities=16%  Similarity=0.269  Sum_probs=52.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----CCCce---eeCCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-----FGMTD---FINPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-----~g~~~---v~~~~~~~~~~~~~~i~~~~~-  153 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.+     .+...   ..|-.+  .++..+.+.+... 
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   95 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAE--PDAPAELARRAAEA   95 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS--TTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHH
Confidence            5788999986 8999999999989999 99999998876654422     23221   223332  2333333322211 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      -.++|++++++|.
T Consensus        96 ~g~id~lv~nAg~  108 (266)
T 4egf_A           96 FGGLDVLVNNAGI  108 (266)
T ss_dssp             HTSCSEEEEECCC
T ss_pred             cCCCCEEEECCCc
Confidence            1279999999874

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.69  E-value=0.0041  Score=49.89  Aligned_cols=80  Identities=20%  Similarity=0.185  Sum_probs=51.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCC-Cc-eee--CCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFG-MT-DFI--NPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g-~~-~v~--~~~~~~~~~~~~~i~~~~~-  153 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.    +.+ .. ..+  |-.+  .++..+.+.+... 
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   85 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSD--RAQCDALAGRAVEE   85 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5788999986 8999999998888999 9999999987765432    233 11 122  3222  1222222222211 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      -.++|++++++|.
T Consensus        86 ~g~id~lvnnAg~   98 (262)
T 3pk0_A           86 FGGIDVVCANAGV   98 (262)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             hCCCCEEEECCCC
Confidence            1279999999873

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.69  E-value=0.0082  Score=47.33  Aligned_cols=72  Identities=19%  Similarity=0.111  Sum_probs=48.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHhCCCcee-eCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMH--GAAKIIGIDKNPWKKEKGKAFGMTDF-INPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~--g~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      .+.+|||+|+ |.+|...++.+...  |+ +|+++++++++.+.+ ..+...+ .|..+   .   +.+.+...  ++|+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~-~V~~~~r~~~~~~~~-~~~~~~~~~D~~d---~---~~~~~~~~--~~d~   72 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEKI-GGEADVFIGDITD---A---DSINPAFQ--GIDA   72 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC-EEEEEESCHHHHHHT-TCCTTEEECCTTS---H---HHHHHHHT--TCSE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc-EEEEEEcCCCchhhc-CCCeeEEEecCCC---H---HHHHHHHc--CCCE
Confidence            4678999986 99999999888888  77 999999987665433 1122222 23222   2   22333332  6899


Q ss_pred             EEEccC
Q 024295          160 CFECTG  165 (269)
Q Consensus       160 v~d~~g  165 (269)
                      +|++++
T Consensus        73 vi~~a~   78 (253)
T 1xq6_A           73 LVILTS   78 (253)
T ss_dssp             EEECCC
T ss_pred             EEEecc
Confidence            999886

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.69  E-value=0.0074  Score=48.23  Aligned_cols=78  Identities=14%  Similarity=0.132  Sum_probs=51.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-h---CCCc-ee--eCCCCCCCccHHHHHHhhh---
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-A---FGMT-DF--INPDDEPNKSISELVKGIT---  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~---~g~~-~v--~~~~~~~~~~~~~~i~~~~---  152 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. +   .+.. ..  .|-.+  ++.+.+.+.+..   
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   80 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQ--ESEVRSLFEQVDREQ   80 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCC--HHHHHHHHHHHHHhc
Confidence            4678999986 8999999998888999 9999999877665432 2   2322 11  23322  122333333321   


Q ss_pred             CCCCccEEEEccC
Q 024295          153 HGMGVDYCFECTG  165 (269)
Q Consensus       153 ~~~~~d~v~d~~g  165 (269)
                      .+ .+|++++++|
T Consensus        81 ~g-~id~lvnnAg   92 (260)
T 2qq5_A           81 QG-RLDVLVNNAY   92 (260)
T ss_dssp             TT-CCCEEEECCC
T ss_pred             CC-CceEEEECCc
Confidence            23 7999999984

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.69  E-value=0.0031  Score=51.00  Aligned_cols=80  Identities=16%  Similarity=0.084  Sum_probs=51.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCc-ee--eCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMT-DF--INPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      .++++||+|+ |++|.+.+..+...|+ +|+.+++++++.+.+. +++.. ..  .|-.+  .++..+.+.+... -.++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i  103 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIGDDALCVPTDVTD--PDSVRALFTATVEKFGRV  103 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTSCCEEEECCTTS--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            5688999986 8999999998888999 9999999987766543 34421 12  23322  1222222222211 0279


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus       104 D~lVnnAg~  112 (272)
T 4dyv_A          104 DVLFNNAGT  112 (272)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=96.69  E-value=0.0093  Score=49.02  Aligned_cols=99  Identities=16%  Similarity=0.015  Sum_probs=65.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC---------C-ceeeCCCCCCCccHHHHHHhh
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG---------M-TDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g---------~-~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      ..++.+||++|+|. |..+..+++..+..+|++++.+++..+.+++.-         . -.++.      .+..+.+.+.
T Consensus        93 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~------~D~~~~~~~~  165 (304)
T 3bwc_A           93 HPKPERVLIIGGGD-GGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRV------GDGLAFVRQT  165 (304)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHHHSS
T ss_pred             CCCCCeEEEEcCCC-CHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE------CcHHHHHHhc
Confidence            35678999999876 777888887765559999999988888776621         0 11221      3343333321


Q ss_pred             hCCCCccEEEEccCC----------hhHHHHHHHHcccCCcEEEEEcc
Q 024295          152 THGMGVDYCFECTGV----------PSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      . ...||+|+-....          ...+..+.+.|+++ |.++....
T Consensus       166 ~-~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~~  211 (304)
T 3bwc_A          166 P-DNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPD-GICCNQGE  211 (304)
T ss_dssp             C-TTCEEEEEEECC---------CCHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             c-CCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCC-cEEEEecC
Confidence            2 2389998743311          24578889999996 99988643

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=96.68  E-value=0.0085  Score=47.77  Aligned_cols=100  Identities=19%  Similarity=0.241  Sum_probs=66.3

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCc--eeeCCCCCCCccHHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMT--DFINPDDEPNKSISELVK  149 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~--~v~~~~~~~~~~~~~~i~  149 (269)
                      +......+++.+||.+|+|. |..+..+++.. . +|++++.+++..+.+++.    +..  .++..+-   .++     
T Consensus        29 l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~-~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~---~~l-----   97 (260)
T 1vl5_A           29 LMQIAALKGNEEVLDVATGG-GHVANAFAPFV-K-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA---EQM-----   97 (260)
T ss_dssp             HHHHHTCCSCCEEEEETCTT-CHHHHHHGGGS-S-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC----CC-----
T ss_pred             HHHHhCCCCCCEEEEEeCCC-CHHHHHHHHhC-C-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH---HhC-----
Confidence            34455677899999999984 87777777764 4 999999999888777652    321  1221111   111     


Q ss_pred             hhhCCCCccEEEEccCC------hhHHHHHHHHcccCCcEEEEEc
Q 024295          150 GITHGMGVDYCFECTGV------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       150 ~~~~~~~~d~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .. +...||+|+....-      ...+.++.+.|++| |+++...
T Consensus        98 ~~-~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~~~~  140 (260)
T 1vl5_A           98 PF-TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVD  140 (260)
T ss_dssp             CS-CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CC-CCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCC-CEEEEEE
Confidence            01 22389999865322      34688899999996 9998764

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.68  E-value=0.011  Score=49.26  Aligned_cols=89  Identities=19%  Similarity=0.246  Sum_probs=63.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+.+|.|+|.|.+|...++.++..|. +|++.++++++.+.+.++|....         ++.+.+.      ..|+|+.+
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~---------~l~e~l~------~aDvVi~~  217 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPRPEEAAEFQAEFV---------STPELAA------QSDFIVVA  217 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCCHHHHHTTTCEEC---------CHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcchhHHHhcCceeC---------CHHHHHh------hCCEEEEe
Confidence            46799999999999999999999999 89999988776666666664321         1222222      56899988


Q ss_pred             cCChh----HH-HHHHHHcccCCcEEEEEcc
Q 024295          164 TGVPS----LL-SEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       164 ~g~~~----~~-~~~~~~l~~~~G~~v~~g~  189 (269)
                      +....    .+ ...+..++++ ..++.++.
T Consensus       218 vp~~~~t~~~i~~~~~~~mk~g-ailIn~sr  247 (330)
T 2gcg_A          218 CSLTPATEGLCNKDFFQKMKET-AVFINISR  247 (330)
T ss_dssp             CCCCTTTTTCBSHHHHHHSCTT-CEEEECSC
T ss_pred             CCCChHHHHhhCHHHHhcCCCC-cEEEECCC
Confidence            85421    12 3566778885 77776654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=96.68  E-value=0.0092  Score=46.56  Aligned_cols=99  Identities=19%  Similarity=0.275  Sum_probs=65.4

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC-ceeeCCCCCCCccHHHHHHhhhC
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM-TDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      ...++++.+||-+|+|..|..+..+++..+. +|++++.+++..+.+++    .+. ..++..+-   ..+    ..+.+
T Consensus        50 ~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~---~~~----~~~~~  121 (230)
T 3evz_A           50 KTFLRGGEVALEIGTGHTAMMALMAEKFFNC-KVTATEVDEEFFEYARRNIERNNSNVRLVKSNG---GII----KGVVE  121 (230)
T ss_dssp             HTTCCSSCEEEEECCTTTCHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS---CSS----TTTCC
T ss_pred             HhhcCCCCEEEEcCCCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc---hhh----hhccc
Confidence            4456789999999999558888888887666 99999999988777754    332 12222210   001    11112


Q ss_pred             CCCccEEEEccCC-------------------------hhHHHHHHHHcccCCcEEEEE
Q 024295          154 GMGVDYCFECTGV-------------------------PSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       154 ~~~~d~v~d~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~  187 (269)
                       ..||+|+-....                         ...+..+.+.|++| |+++.+
T Consensus       122 -~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~  178 (230)
T 3evz_A          122 -GTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG-GKVALY  178 (230)
T ss_dssp             -SCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE-EEEEEE
T ss_pred             -CceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC-eEEEEE
Confidence             379999843110                         33577788889996 998875

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.67  E-value=0.015  Score=49.28  Aligned_cols=133  Identities=11%  Similarity=0.073  Sum_probs=79.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHH--------cCCCeEEEE-cCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCC
Q 024295           86 SSVAVLGLGTVGLGAVDGARM--------HGAAKIIGI-DKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~--------~g~~~v~~~-~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      =+|.|+|+|.+|..=+...+.        -++ +++++ ++++++.+. ++++|...++       .++.+.+.    ..
T Consensus        26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~-~lvav~d~~~~~a~~~a~~~g~~~~y-------~d~~ell~----~~   93 (393)
T 4fb5_A           26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERP-RLVHLAEANAGLAEARAGEFGFEKAT-------ADWRALIA----DP   93 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCC-EEEEEECC--TTHHHHHHHHTCSEEE-------SCHHHHHH----CT
T ss_pred             ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCc-EEEEEECCCHHHHHHHHHHhCCCeec-------CCHHHHhc----CC
Confidence            468999999998643322221        245 56655 566666655 4668876665       34444443    23


Q ss_pred             CccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHH
Q 024295          156 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCK  231 (269)
Q Consensus       156 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~  231 (269)
                      .+|+|+-|+....+.+.+..+++.  |+-|++..+.... .-....+.    .+++.+.-...  +.....+..+.++++
T Consensus        94 ~iDaV~IatP~~~H~~~a~~al~a--GkhVl~EKPla~~-~~ea~~l~~~a~~~g~~l~vg~~--~R~~p~~~~~k~~i~  168 (393)
T 4fb5_A           94 EVDVVSVTTPNQFHAEMAIAALEA--GKHVWCEKPMAPA-YADAERMLATAERSGKVAALGYN--YIQNPVMRHIRKLVG  168 (393)
T ss_dssp             TCCEEEECSCGGGHHHHHHHHHHT--TCEEEECSCSCSS-HHHHHHHHHHHHHSSSCEEECCG--GGGCHHHHHHHHHHH
T ss_pred             CCcEEEECCChHHHHHHHHHHHhc--CCeEEEccCCccc-HHHHHHhhhhHHhcCCccccccc--cccChHHHHHHHHHH
Confidence            899999999888788888888887  6888887665311 11111222    23443322221  112346888899999


Q ss_pred             CCCC
Q 024295          232 NKEF  235 (269)
Q Consensus       232 ~g~~  235 (269)
                      +|++
T Consensus       169 ~G~i  172 (393)
T 4fb5_A          169 DGVI  172 (393)
T ss_dssp             TTTT
T ss_pred             cCCC
Confidence            9875

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=96.67  E-value=0.011  Score=49.22  Aligned_cols=133  Identities=15%  Similarity=0.056  Sum_probs=80.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHc-CCCeEEE-EcCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           86 SSVAVLGLGTVGLGAVDGARMH-GAAKIIG-IDKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~-g~~~v~~-~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      -+|.|+|+|.+|...+..++.. +. ++++ .++++++.+. ++++|...++       .++.+.+.    ...+|+|+.
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~~~~~~~~~~~-------~~~~~ll~----~~~~D~V~i   73 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQA-EVRGIASRRLENAQKMAKELAIPVAY-------GSYEELCK----DETIDIIYI   73 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSE-EEEEEBCSSSHHHHHHHHHTTCCCCB-------SSHHHHHH----CTTCSEEEE
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCc-EEEEEEeCCHHHHHHHHHHcCCCcee-------CCHHHHhc----CCCCCEEEE
Confidence            3688999999998877777664 56 6664 5667666555 4557754333       33433332    237999999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      |+....+.+.+..++..  |+-|++..+.... .-....+.    .++..+.-...  +.....+..+.+++++|.+
T Consensus        74 ~tp~~~h~~~~~~al~~--gk~vl~EKP~~~~-~~e~~~l~~~a~~~g~~~~v~~~--~r~~p~~~~~k~~i~~g~i  145 (330)
T 3e9m_A           74 PTYNQGHYSAAKLALSQ--GKPVLLEKPFTLN-AAEAEELFAIAQEQGVFLMEAQK--SVFLPITQKVKATIQEGGL  145 (330)
T ss_dssp             CCCGGGHHHHHHHHHHT--TCCEEECSSCCSS-HHHHHHHHHHHHHTTCCEEECCS--GGGCHHHHHHHHHHHTTTT
T ss_pred             cCCCHHHHHHHHHHHHC--CCeEEEeCCCCCC-HHHHHHHHHHHHHcCCeEEEEEh--hhhCHHHHHHHHHHhCCCC
Confidence            99887777777777777  5556776543211 11111121    23443332221  1122457888899999876

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.67  E-value=0.0079  Score=48.63  Aligned_cols=80  Identities=16%  Similarity=0.154  Sum_probs=51.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-DF--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |.+|.+.+..+...|+ +|+++++++++.+.+    ++.+.. ..  .|-.+  .+++.+.+.+... -
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   97 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS--VPEIEALVAAVVERY   97 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHHh
Confidence            4688999986 8999999999888999 999999988765543    223432 12  23322  1223222322211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus        98 g~iD~lv~~Ag~  109 (277)
T 2rhc_B           98 GPVDVLVNNAGR  109 (277)
T ss_dssp             CSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999999873

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.66  E-value=0.012  Score=47.42  Aligned_cols=70  Identities=20%  Similarity=0.247  Sum_probs=51.2

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCceeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDFINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      ....+++++|+|+|+.|.+++..+...|+++|+++.|+.++.+.+ ++++.+ ..+  +   .       .   -..+|+
T Consensus       115 ~~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~-~~~--~---~-------~---~~~~Di  178 (271)
T 1npy_A          115 HLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYA-YIN--S---L-------E---NQQADI  178 (271)
T ss_dssp             TCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCE-EES--C---C-------T---TCCCSE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc-cch--h---h-------h---cccCCE
Confidence            344578999999999999999988899988999999998776554 455542 111  1   0       0   127899


Q ss_pred             EEEccCC
Q 024295          160 CFECTGV  166 (269)
Q Consensus       160 v~d~~g~  166 (269)
                      |++++..
T Consensus       179 vInaTp~  185 (271)
T 1npy_A          179 LVNVTSI  185 (271)
T ss_dssp             EEECSST
T ss_pred             EEECCCC
Confidence            9999964

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.66  E-value=0.0016  Score=52.85  Aligned_cols=70  Identities=10%  Similarity=0.068  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+++++|+|+|++|.+++..+...|+++|+++.|+.++.+.+.+. . ...        .+ +.+.+..  ..+|+|+++
T Consensus       116 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~-~-~~~--------~~-~~~~~~~--~~aDiVIna  182 (277)
T 3don_A          116 EDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLN-I-NKI--------NL-SHAESHL--DEFDIIINT  182 (277)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSC-C-EEE--------CH-HHHHHTG--GGCSEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHh-c-ccc--------cH-hhHHHHh--cCCCEEEEC
Confidence            578999999999999999999999998899999988775544321 0 111        12 1222221  268999999


Q ss_pred             cCC
Q 024295          164 TGV  166 (269)
Q Consensus       164 ~g~  166 (269)
                      ++.
T Consensus       183 Tp~  185 (277)
T 3don_A          183 TPA  185 (277)
T ss_dssp             CC-
T ss_pred             ccC
Confidence            864

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.66  E-value=0.014  Score=48.93  Aligned_cols=132  Identities=11%  Similarity=0.034  Sum_probs=79.9

Q ss_pred             CeEEEEcCChhHH-HHHHHHHHc-CCCeEE-EEcCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           86 SSVAVLGLGTVGL-GAVDGARMH-GAAKII-GIDKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        86 ~~vlI~G~g~~G~-~a~~la~~~-g~~~v~-~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      -+|.|+|+|.+|. ..+..++.. ++ +++ +.++++++.+. ++++|....        .++.+.+    ....+|+|+
T Consensus        28 ~rigiIG~G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~~~~~a~~~g~~~~--------~~~~~ll----~~~~~D~V~   94 (350)
T 3rc1_A           28 IRVGVIGCADIAWRRALPALEAEPLT-EVTAIASRRWDRAKRFTERFGGEPV--------EGYPALL----ERDDVDAVY   94 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCTTE-EEEEEEESSHHHHHHHHHHHCSEEE--------ESHHHHH----TCTTCSEEE
T ss_pred             eEEEEEcCcHHHHHHHHHHHHhCCCe-EEEEEEcCCHHHHHHHHHHcCCCCc--------CCHHHHh----cCCCCCEEE
Confidence            4689999999997 555555555 67 665 45677666554 455776543        2233333    234799999


Q ss_pred             EccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          162 ECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      .|+....+.+.+..++..  |+-|++..+... ..-....+.    .++..+.-....  .....+..+.+++.+|.+
T Consensus        95 i~tp~~~h~~~~~~al~a--Gk~Vl~EKP~a~-~~~ea~~l~~~a~~~g~~~~v~~~~--R~~p~~~~~k~~i~~G~i  167 (350)
T 3rc1_A           95 VPLPAVLHAEWIDRALRA--GKHVLAEKPLTT-DRPQAERLFAVARERGLLLMENFMF--LHHPQHRQVADMLDEGVI  167 (350)
T ss_dssp             ECCCGGGHHHHHHHHHHT--TCEEEEESSSCS-SHHHHHHHHHHHHHTTCCEEEECGG--GGCTHHHHHHHHHHTTTT
T ss_pred             ECCCcHHHHHHHHHHHHC--CCcEEEeCCCCC-CHHHHHHHHHHHHHhCCEEEEEecc--cCCHHHHHHHHHHhcCCC
Confidence            999888787788888777  566777655421 111111221    234444322211  123468888899999876

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=96.66  E-value=0.0065  Score=47.76  Aligned_cols=101  Identities=16%  Similarity=0.206  Sum_probs=66.9

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc---eeeCCCCCCCccHHHHHHhhh
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT---DFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      +.......++.+||-+|+|. |..+..+++. |..++++++.+++..+.+++....   .++..      +..+ + . .
T Consensus        35 l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~------d~~~-~-~-~  103 (243)
T 3bkw_A           35 LRAMLPEVGGLRIVDLGCGF-GWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPDTGITYERA------DLDK-L-H-L  103 (243)
T ss_dssp             HHHHSCCCTTCEEEEETCTT-CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCSSSEEEEEC------CGGG-C-C-C
T ss_pred             HHHhccccCCCEEEEEcCcC-CHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhcccCCceEEEc------Chhh-c-c-C
Confidence            44555666889999999876 7777777776 555999999999988888875421   12211      1110 0 0 1


Q ss_pred             CCCCccEEEEccC------ChhHHHHHHHHcccCCcEEEEEc
Q 024295          153 HGMGVDYCFECTG------VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       153 ~~~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ....+|+|+-...      ....+..+.+.+++| |+++...
T Consensus       104 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~~~~  144 (243)
T 3bkw_A          104 PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPG-GHFVFST  144 (243)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CCCCceEEEEeccccccchHHHHHHHHHHhcCcC-cEEEEEe
Confidence            2237999985432      133578888999996 9987753

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.66  E-value=0.0069  Score=48.98  Aligned_cols=79  Identities=15%  Similarity=0.183  Sum_probs=50.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hC---CCceee--CCCCCCCccHHHHHHhhhC-CC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AF---GMTDFI--NPDDEPNKSISELVKGITH-GM  155 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~---g~~~v~--~~~~~~~~~~~~~i~~~~~-~~  155 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. ++   +.-..+  |-.+  .+.+.+.+.+... -.
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g  104 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYGDCQAIPADLSS--EAGARRLAQALGELSA  104 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTS--HHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCC--HHHHHHHHHHHHHhcC
Confidence            4688999986 8999999999888999 9999999887665432 22   211122  2222  1222222222211 12


Q ss_pred             CccEEEEccC
Q 024295          156 GVDYCFECTG  165 (269)
Q Consensus       156 ~~d~v~d~~g  165 (269)
                      ++|++++++|
T Consensus       105 ~iD~lvnnAg  114 (276)
T 2b4q_A          105 RLDILVNNAG  114 (276)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999987

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=96.66  E-value=0.015  Score=46.72  Aligned_cols=104  Identities=19%  Similarity=0.219  Sum_probs=62.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEE-cCCcchHHHH----HhCCCce-e--eCCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGI-DKNPWKKEKG----KAFGMTD-F--INPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~-~~~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  153 (269)
                      .++++||+|+ |++|.+.++.+...|+ +|+.+ .+++++.+.+    +..+... .  .|-.+  .++..+.+.+... 
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSD--PAAVRRLFATAEEA  102 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5789999986 8999999888888899 88776 4444444433    3344322 1  23332  1222222222211 


Q ss_pred             CCCccEEEEccCChh-------------------------HHHHHHHHcccCCcEEEEEccCC
Q 024295          154 GMGVDYCFECTGVPS-------------------------LLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       154 ~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      -.++|++++++|...                         ..+.++..++.+ |+++.++...
T Consensus       103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-g~iv~isS~~  164 (267)
T 3u5t_A          103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVG-GRIINMSTSQ  164 (267)
T ss_dssp             HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCTH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CeEEEEeChh
Confidence            027999999987410                         133555566775 9999987543

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.66  E-value=0.0067  Score=49.29  Aligned_cols=79  Identities=13%  Similarity=0.205  Sum_probs=51.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCce-e--eCCCCCCCccHHHHHHhhh--C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTD-F--INPDDEPNKSISELVKGIT--H  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~-v--~~~~~~~~~~~~~~i~~~~--~  153 (269)
                      +++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+.+    .+... .  .|-.+  +++..+.+.+..  -
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~  103 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSD--ELQMRNAVRDLVLKF  103 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            5788999986 8999999998888999 99999998877665432    23221 2  23322  122222222221  1


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      + ++|++++++|.
T Consensus       104 g-~iD~lVnnAg~  115 (283)
T 3v8b_A          104 G-HLDIVVANAGI  115 (283)
T ss_dssp             S-CCCEEEECCCC
T ss_pred             C-CCCEEEECCCC
Confidence            2 79999998874

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=96.65  E-value=0.005  Score=50.88  Aligned_cols=99  Identities=14%  Similarity=0.046  Sum_probs=64.5

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CC------ceeeCCCCCCCccHHHHHHhhhCCC
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GM------TDFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~------~~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      .+..+||++|+|. |..+..+++..+..+|++++.+++-.+.+++. ..      +.-+....   .+..+.+.. .+ .
T Consensus       107 ~~~~~VLdIG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~---~D~~~~l~~-~~-~  180 (314)
T 2b2c_A          107 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFC---GDGFEFLKN-HK-N  180 (314)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEEC---SCHHHHHHH-CT-T
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEE---ChHHHHHHh-cC-C
Confidence            3568999999876 77888888876555999999999888888763 11      10011111   444444433 22 3


Q ss_pred             CccEEEEccCC----------hhHHHHHHHHcccCCcEEEEEc
Q 024295          156 GVDYCFECTGV----------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       156 ~~d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .||+|+-....          ...++.+.+.|+++ |.++.-.
T Consensus       181 ~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~Lkpg-G~lv~~~  222 (314)
T 2b2c_A          181 EFDVIITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQG  222 (314)
T ss_dssp             CEEEEEECCC-------------HHHHHHHHEEEE-EEEEEEC
T ss_pred             CceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCC-eEEEEEC
Confidence            79999743311          34577889999996 9988764

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.65  E-value=0.0041  Score=49.83  Aligned_cols=80  Identities=18%  Similarity=0.197  Sum_probs=52.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCce---eeCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTD---FINPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+.    +.+...   ..|-.+  .+.+.+.+.+... .
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~  104 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSH--SDAIAAFATGVLAAH  104 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCC--HHHHHHHHHHHHHhc
Confidence            5789999986 8999999988888899 8999999987765542    234321   223322  1222222222211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      ..+|++++++|.
T Consensus       105 g~id~lv~~Ag~  116 (262)
T 3rkr_A          105 GRCDVLVNNAGV  116 (262)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            279999999875

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=96.65  E-value=0.0092  Score=50.10  Aligned_cols=132  Identities=15%  Similarity=0.131  Sum_probs=80.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHc-CCCeEE-EEcCCcchHHHH-HhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           86 SSVAVLGLGTVGLGAVDGARMH-GAAKII-GIDKNPWKKEKG-KAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~-g~~~v~-~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      -+|.|+|+|.+|...+..++.. ++ +++ +.++++++.+.+ +++|...   +     .++.+.+.    ...+|+|+.
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~-~lvav~d~~~~~~~~~~~~~g~~~---~-----~~~~~~l~----~~~~D~V~i   72 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKL-KLVTCYSRTEDKREKFGKRYNCAG---D-----ATMEALLA----REDVEMVII   72 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSE-EEEEEECSSHHHHHHHHHHHTCCC---C-----SSHHHHHH----CSSCCEEEE
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHHcCCCC---c-----CCHHHHhc----CCCCCEEEE
Confidence            4689999999998777766655 66 555 557777776654 4566542   2     33444332    237999999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      |+....+...+..++..  |+-|++..+... ..-....+.    .++..+.-...  +.....+..+.+++++|.+
T Consensus        73 ~tp~~~h~~~~~~al~~--gk~vl~EKP~~~-~~~~~~~l~~~a~~~~~~~~v~~~--~R~~p~~~~~k~~i~~g~i  144 (354)
T 3db2_A           73 TVPNDKHAEVIEQCARS--GKHIYVEKPISV-SLDHAQRIDQVIKETGVKFLCGHS--SRRLGALRKMKEMIDTKEI  144 (354)
T ss_dssp             CSCTTSHHHHHHHHHHT--TCEEEEESSSCS-SHHHHHHHHHHHHHHCCCEEEECG--GGGSHHHHHHHHHHHTTTT
T ss_pred             eCChHHHHHHHHHHHHc--CCEEEEccCCCC-CHHHHHHHHHHHHHcCCeEEEeec--hhcCHHHHHHHHHHhcCCC
Confidence            99887777777777777  566677655321 111111221    23443332221  1123467888899999876

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=96.65  E-value=0.011  Score=47.25  Aligned_cols=80  Identities=9%  Similarity=0.109  Sum_probs=48.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEE-cCCcchHHHH----HhCCCc-ee--eCCCCCCCccHHHHHHhhhCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGI-DKNPWKKEKG----KAFGMT-DF--INPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~-~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      .++++||+|+ |++|.+.++.+...|+ +|+.+ .+++++.+.+    ++.+.. ..  .|-.+  .+...+.+.+....
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   83 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTN--AAEVEAAISAAADK   83 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5789999986 8999999998888899 88887 5555444332    333432 12  23222  12222222222110


Q ss_pred             -CCccEEEEccCC
Q 024295          155 -MGVDYCFECTGV  166 (269)
Q Consensus       155 -~~~d~v~d~~g~  166 (269)
                       .++|++++++|.
T Consensus        84 ~g~id~lv~nAg~   96 (259)
T 3edm_A           84 FGEIHGLVHVAGG   96 (259)
T ss_dssp             HCSEEEEEECCCC
T ss_pred             hCCCCEEEECCCc
Confidence             279999998863

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.65  E-value=0.008  Score=48.61  Aligned_cols=77  Identities=19%  Similarity=0.242  Sum_probs=51.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCc-ee--eCCCCCCCccHHHHHHhhhCCCCcc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMT-DF--INPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~-~v--~~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      +++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+. +++.. .+  .|-.+  .+...+.+.+...-.++|
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~~id  105 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELGNRAEFVSTNVTS--EDSVLAAIEAANQLGRLR  105 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHTTSSEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHHHHhCCCC
Confidence            5688999986 8999999998888999 9999999988776653 35432 12  23322  123333333332223789


Q ss_pred             EEEEc
Q 024295          159 YCFEC  163 (269)
Q Consensus       159 ~v~d~  163 (269)
                      +++.+
T Consensus       106 ~lv~~  110 (281)
T 3ppi_A          106 YAVVA  110 (281)
T ss_dssp             EEEEC
T ss_pred             eEEEc
Confidence            99987

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=96.65  E-value=0.0057  Score=48.64  Aligned_cols=100  Identities=20%  Similarity=0.114  Sum_probs=67.7

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCC-CceeeCCCCCCCccHHHHHHhhhC
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFG-MTDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      +.......++.+||-+|+|. |..+..+++.. +. ++++++.+++..+.+++.. ...++..+-   .++       ..
T Consensus        25 l~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~d~---~~~-------~~   92 (259)
T 2p35_A           25 LLAQVPLERVLNGYDLGCGP-GNSTELLTDRYGVN-VITGIDSDDDMLEKAADRLPNTNFGKADL---ATW-------KP   92 (259)
T ss_dssp             HHTTCCCSCCSSEEEETCTT-THHHHHHHHHHCTT-SEEEEESCHHHHHHHHHHSTTSEEEECCT---TTC-------CC
T ss_pred             HHHhcCCCCCCEEEEecCcC-CHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHhCCCcEEEECCh---hhc-------Cc
Confidence            44555677889999999985 88888888876 55 9999999998888887642 122222111   111       11


Q ss_pred             CCCccEEEEccC------ChhHHHHHHHHcccCCcEEEEEc
Q 024295          154 GMGVDYCFECTG------VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       154 ~~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ...||+|+-...      ....+..+.+.+++| |+++...
T Consensus        93 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~~~~  132 (259)
T 2p35_A           93 AQKADLLYANAVFQWVPDHLAVLSQLMDQLESG-GVLAVQM  132 (259)
T ss_dssp             SSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred             cCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCC-eEEEEEe
Confidence            237999986442      133577888899996 9887764

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.64  E-value=0.0056  Score=48.38  Aligned_cols=80  Identities=18%  Similarity=0.239  Sum_probs=51.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----CCCc-eee--CCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-----FGMT-DFI--NPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-----~g~~-~v~--~~~~~~~~~~~~~i~~~~~-  153 (269)
                      +++++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.+     .+.. ..+  |-.+  .+.+.+.+.+... 
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLS--EESINKAFEEIYNL   82 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCC--HHHHHHHHHHHHHh
Confidence            4678999986 9999999998888999 99999998776654422     2322 122  3222  1223333332211 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      -.++|++++++|.
T Consensus        83 ~~~~d~vi~~Ag~   95 (248)
T 2pnf_A           83 VDGIDILVNNAGI   95 (248)
T ss_dssp             SSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1279999999873

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.64  E-value=0.0097  Score=47.67  Aligned_cols=104  Identities=13%  Similarity=0.069  Sum_probs=66.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH---hCCCc--e-eeCCCCCCCccHHHHHH---hhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK---AFGMT--D-FINPDDEPNKSISELVK---GITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~---~~g~~--~-v~~~~~~~~~~~~~~i~---~~~~  153 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.++   +.+..  . ..|-.+  +++..+.+.   +.. 
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~v~~~~~~~-   81 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDALAQRQPRATYLPVELQD--DAQCRDAVAQTIATF-   81 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTC--HHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHHHHhcCCCEEEEEeecCC--HHHHHHHHHHHHHHh-
Confidence            5889999986 8999999988888999 9999998877655443   33322  1 223332  122322232   222 


Q ss_pred             CCCccEEEEccCChh------------------------HHHHHHHHcccCCcEEEEEccCCC
Q 024295          154 GMGVDYCFECTGVPS------------------------LLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       154 ~~~~d~v~d~~g~~~------------------------~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                      + ++|++++++|...                        ..+.++..++.++|++|.++...+
T Consensus        82 G-~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~  143 (258)
T 4gkb_A           82 G-RLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTA  143 (258)
T ss_dssp             S-CCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHH
T ss_pred             C-CCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhh
Confidence            3 7999999987410                        123444455432499999986543

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.64  E-value=0.012  Score=51.41  Aligned_cols=94  Identities=12%  Similarity=0.110  Sum_probs=58.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHh-CCCce-eeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKA-FGMTD-FINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~-~g~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      ++.+|+|+|+|.+|.+++..+... +. +|++++|++++.+.+.+ .+... .++..+  .+++.+.+    .  ++|+|
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~la~~~~~~~~~~D~~d--~~~l~~~l----~--~~DvV   92 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQALAKPSGSKAISLDVTD--DSALDKVL----A--DNDVV   92 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHGGGTCEEEECCTTC--HHHHHHHH----H--TSSEE
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHhcCCcEEEEecCC--HHHHHHHH----c--CCCEE
Confidence            357899999999999988888877 66 89999999887766543 33322 223322  11222222    1  68999


Q ss_pred             EEccCChhHHHHHHHHcccCCcEEEEE
Q 024295          161 FECTGVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       161 ~d~~g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      +++++..........+++.+ -.++..
T Consensus        93 In~tp~~~~~~v~~a~l~~g-~~vvd~  118 (467)
T 2axq_A           93 ISLIPYTFHPNVVKSAIRTK-TDVVTS  118 (467)
T ss_dssp             EECSCGGGHHHHHHHHHHHT-CEEEEC
T ss_pred             EECCchhhhHHHHHHHHhcC-CEEEEe
Confidence            99998643322333455553 455443

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.64  E-value=0.0099  Score=47.98  Aligned_cols=77  Identities=18%  Similarity=0.267  Sum_probs=55.9

Q ss_pred             CCCCeEEEEcCC-hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           83 EKGSSVAVLGLG-TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        83 ~~~~~vlI~G~g-~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      -.|++++|+|.| .+|..++.++...|+ .|+...+.                   .   .++.+.++      .+|+++
T Consensus       159 l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~-------------------t---~~L~~~~~------~ADIVI  209 (285)
T 3l07_A          159 TEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRF-------------------T---TDLKSHTT------KADILI  209 (285)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT-------------------C---SSHHHHHT------TCSEEE
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCC-------------------c---hhHHHhcc------cCCEEE
Confidence            479999999975 489999999999999 78777532                   1   33433332      689999


Q ss_pred             EccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          162 ECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      .++|.+..+.  -+.+++| ..++.+|...
T Consensus       210 ~Avg~p~~I~--~~~vk~G-avVIDvgi~~  236 (285)
T 3l07_A          210 VAVGKPNFIT--ADMVKEG-AVVIDVGINH  236 (285)
T ss_dssp             ECCCCTTCBC--GGGSCTT-CEEEECCCEE
T ss_pred             ECCCCCCCCC--HHHcCCC-cEEEEecccC
Confidence            9998764432  2567886 8888887543

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.64  E-value=0.0054  Score=49.88  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=31.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW  120 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~  120 (269)
                      +++++||+|+ +++|.+.++.+...|+ +|+.++++++
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~   44 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAE   44 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChh
Confidence            4789999986 8999999998888899 9999998876

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.63  E-value=0.0058  Score=48.92  Aligned_cols=80  Identities=15%  Similarity=0.118  Sum_probs=51.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCc-e--eeCCCCCCCccHHHHHHhhhCC-CCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMT-D--FINPDDEPNKSISELVKGITHG-MGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~-~--v~~~~~~~~~~~~~~i~~~~~~-~~~  157 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. ++... .  ..|-.+  ++.+.+.+.+.... .++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   82 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ--PAQWKAAVDTAVTAFGGL   82 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcCceEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            4688999986 8999999998888999 9999999887765543 33321 1  123322  12232323222110 179


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus        83 D~lv~~Ag~   91 (260)
T 1nff_A           83 HVLVNNAGI   91 (260)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=96.63  E-value=0.014  Score=48.70  Aligned_cols=132  Identities=13%  Similarity=0.069  Sum_probs=79.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHc-CCCeEE-EEcCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           86 SSVAVLGLGTVGLGAVDGARMH-GAAKII-GIDKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~-g~~~v~-~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      -+|.|+|+|.+|...+..++.. +. +++ +.++++++.+. ++++|.. ++       .++.+.+    ....+|+|+.
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~a~~~g~~-~~-------~~~~~~l----~~~~~D~V~i   71 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDL-ELVVIADPFIEGAQRLAEANGAE-AV-------ASPDEVF----ARDDIDGIVI   71 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHTTTCE-EE-------SSHHHHT----TCSCCCEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHHcCCc-ee-------CCHHHHh----cCCCCCEEEE
Confidence            3689999999998877776665 66 555 56777777655 4557733 33       2233222    3348999999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhh---h-hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIAL---A-CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      |+....+...+..++..  |+-|++..+.... .-....+   . .++..+.-...  +.....+..+.+++.+|.+
T Consensus        72 ~tp~~~h~~~~~~al~~--gk~v~~EKP~~~~-~~~~~~l~~~a~~~g~~~~v~~~--~r~~p~~~~~k~~i~~g~i  143 (344)
T 3euw_A           72 GSPTSTHVDLITRAVER--GIPALCEKPIDLD-IEMVRACKEKIGDGASKVMLGFN--RRFDPSFAAINARVANQEI  143 (344)
T ss_dssp             CSCGGGHHHHHHHHHHT--TCCEEECSCSCSC-HHHHHHHHHHHGGGGGGEEECCG--GGGCHHHHHHHHHHHTTTT
T ss_pred             eCCchhhHHHHHHHHHc--CCcEEEECCCCCC-HHHHHHHHHHHHhcCCeEEecch--hhcCHHHHHHHHHHhcCCC
Confidence            99887777777777777  5556676543211 1111111   1 22333322211  1123457888899999875

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.63  E-value=0.0069  Score=49.07  Aligned_cols=80  Identities=13%  Similarity=0.144  Sum_probs=50.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCce-e--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTD-F--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |++|.+.+..+...|+ +|+.+++++++.+.+.    +.+... .  .|-.+  .+...+.+.+... -
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTS--TDEVHAAVAAAVERF   99 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            5789999986 8999999988888899 9999999887665442    234321 1  23322  1222222222211 0


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus       100 g~id~lv~nAg~  111 (279)
T 3sju_A          100 GPIGILVNSAGR  111 (279)
T ss_dssp             CSCCEEEECCCC
T ss_pred             CCCcEEEECCCC
Confidence            279999999874

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=96.62  E-value=0.0073  Score=48.28  Aligned_cols=80  Identities=21%  Similarity=0.293  Sum_probs=50.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcch-HHHHH-hC----CCce-ee--CCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWK-KEKGK-AF----GMTD-FI--NPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~-~~~~~-~~----g~~~-v~--~~~~~~~~~~~~~i~~~~~  153 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.+++++++ .+.+. ++    +... .+  |-.+  .+.+.+.+.+...
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   79 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK--GEAVRGLVDNAVR   79 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCC--HHHHHHHHHHHHH
Confidence            4678999986 8999999999888999 99999988766 44332 22    4321 22  2222  1222222322211


Q ss_pred             -CCCccEEEEccCC
Q 024295          154 -GMGVDYCFECTGV  166 (269)
Q Consensus       154 -~~~~d~v~d~~g~  166 (269)
                       -.++|++++++|.
T Consensus        80 ~~g~iD~lv~~Ag~   93 (260)
T 1x1t_A           80 QMGRIDILVNNAGI   93 (260)
T ss_dssp             HHSCCSEEEECCCC
T ss_pred             hcCCCCEEEECCCC
Confidence             0279999999873

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.62  E-value=0.0076  Score=48.33  Aligned_cols=80  Identities=15%  Similarity=0.126  Sum_probs=52.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCce-e--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTD-F--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.    +.+... .  .|-.+  .++..+.+.+... -
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITD--DAQVAHLVDETMKAY   86 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            5789999986 8999999998888999 9999999887665542    234321 2  23332  1223222322211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus        87 g~id~lv~nAg~   98 (264)
T 3ucx_A           87 GRVDVVINNAFR   98 (264)
T ss_dssp             SCCSEEEECCCS
T ss_pred             CCCcEEEECCCC
Confidence            279999998854

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.62  E-value=0.0063  Score=48.15  Aligned_cols=41  Identities=22%  Similarity=0.318  Sum_probs=35.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG  125 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~  125 (269)
                      +++++||+|+ |.+|.+.+..+...|+ +|+.+++++++.+.+
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   54 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEV   54 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHH
Confidence            5789999986 8999999998888999 999999998776654

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=96.61  E-value=0.008  Score=47.74  Aligned_cols=78  Identities=17%  Similarity=0.239  Sum_probs=50.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCc-ee--eCCCCCCCccHHHHHHhhhCC-CCccE
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMT-DF--INPDDEPNKSISELVKGITHG-MGVDY  159 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~-~v--~~~~~~~~~~~~~~i~~~~~~-~~~d~  159 (269)
                      +++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+. +++.. ..  .|-.+  .+.+.+.+.+.... .++|+
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~iD~   77 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN--RAAIEEMLASLPAEWCNIDI   77 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHTSCTTTCCCCE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC--HHHHHHHHHHHHHhCCCCCE
Confidence            36889986 8999999998888999 9999999887766543 34322 12  23332  12233333333221 27999


Q ss_pred             EEEccCC
Q 024295          160 CFECTGV  166 (269)
Q Consensus       160 v~d~~g~  166 (269)
                      +++++|.
T Consensus        78 lvnnAg~   84 (248)
T 3asu_A           78 LVNNAGL   84 (248)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9998873

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.61  E-value=0.009  Score=47.25  Aligned_cols=80  Identities=20%  Similarity=0.302  Sum_probs=52.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCce-e--eCCCCCCCccHHHHHHhhh-CC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTD-F--INPDDEPNKSISELVKGIT-HG  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~-~~  154 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.    +.+... .  .|-.+  .++..+.+.+.. ..
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISD--IESIQNFFAEIKAEN   80 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHc
Confidence            4678999986 8999999888888899 9999999887665543    234321 1  23322  122333333322 12


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus        81 ~~id~li~~Ag~   92 (247)
T 3lyl_A           81 LAIDILVNNAGI   92 (247)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999874

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=96.61  E-value=0.011  Score=47.47  Aligned_cols=101  Identities=21%  Similarity=0.242  Sum_probs=68.5

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CC---ceeeCCCCCCCccHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GM---TDFINPDDEPNKSISELV  148 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~---~~v~~~~~~~~~~~~~~i  148 (269)
                      +.....+.++.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++.    |.   ..++..+-   .++    
T Consensus        53 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~----  123 (273)
T 3bus_A           53 MIALLDVRSGDRVLDVGCGI-GKPAVRLATARDV-RVTGISISRPQVNQANARATAAGLANRVTFSYADA---MDL----  123 (273)
T ss_dssp             HHHHSCCCTTCEEEEESCTT-SHHHHHHHHHSCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSC----
T ss_pred             HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcc---ccC----
Confidence            44567788999999999986 8888889988887 999999998877776542    32   12222111   110    


Q ss_pred             HhhhCCCCccEEEEcc-----C-ChhHHHHHHHHcccCCcEEEEEc
Q 024295          149 KGITHGMGVDYCFECT-----G-VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~-----g-~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                       . .+...||+|+-.-     . ....+..+.+.+++| |+++...
T Consensus       124 -~-~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~  166 (273)
T 3bus_A          124 -P-FEDASFDAVWALESLHHMPDRGRALREMARVLRPG-GTVAIAD  166 (273)
T ss_dssp             -C-SCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEE-EEEEEEE
T ss_pred             -C-CCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCC-eEEEEEE
Confidence             0 1223799997432     1 233578888999996 9988765

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.60  E-value=0.0099  Score=48.56  Aligned_cols=77  Identities=17%  Similarity=0.183  Sum_probs=50.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCC-c-e--eeCCCCCCCc-cHHH----HHH
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGM-T-D--FINPDDEPNK-SISE----LVK  149 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~-~-~--v~~~~~~~~~-~~~~----~i~  149 (269)
                      +++++||+|+ |++|.+.++.+...|+ +|+.++|++++.+.+    ++.+. . .  ..|-.+   . +..+    .+.
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~---~~~~v~~~~~~~~   86 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTD---PIATMSSLADFIK   86 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTS---CHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCC---cHHHHHHHHHHHH
Confidence            5788999986 8999999988888899 999999998765543    22221 1 1  223332   2 2222    222


Q ss_pred             hhhCCCCccEEEEccCC
Q 024295          150 GITHGMGVDYCFECTGV  166 (269)
Q Consensus       150 ~~~~~~~~d~v~d~~g~  166 (269)
                      +.. + ++|++++++|.
T Consensus        87 ~~~-g-~iD~lv~nAg~  101 (311)
T 3o26_A           87 THF-G-KLDILVNNAGV  101 (311)
T ss_dssp             HHH-S-SCCEEEECCCC
T ss_pred             HhC-C-CCCEEEECCcc
Confidence            222 2 79999999984

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.60  E-value=0.0058  Score=48.83  Aligned_cols=80  Identities=15%  Similarity=0.081  Sum_probs=51.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCce-e--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTD-F--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.    +.+... .  .|-.+  .+...+.+.+... -
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   87 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTD--EQHREAVIKAALDQF   87 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            5789999986 8999999888888899 8999999887665542    234321 2  23322  1222222222211 0


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus        88 g~id~lv~nAg~   99 (256)
T 3gaf_A           88 GKITVLVNNAGG   99 (256)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999999874

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.60  E-value=0.0068  Score=48.84  Aligned_cols=80  Identities=18%  Similarity=0.152  Sum_probs=51.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT-DF--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      .++++||+|+ |.+|.+.+..+...|+ +|+++++++++.+.+.    +.+.. .+  .|-.+  .+.+.+.+.+... -
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~  106 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN--REDIYSSAKKVKAEI  106 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCC--HHHHHHHHHHHHHHC
Confidence            4688999986 8999999999888999 9999999887665432    23432 12  23222  1223333332211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus       107 g~iD~li~~Ag~  118 (272)
T 1yb1_A          107 GDVSILVNNAGV  118 (272)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCcEEEECCCc
Confidence            279999999873

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=96.59  E-value=0.0024  Score=50.73  Aligned_cols=104  Identities=14%  Similarity=0.090  Sum_probs=64.6

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHH----hCCCceeeCCCCCCCccHHHHHHhhh--
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGK----AFGMTDFINPDDEPNKSISELVKGIT--  152 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~i~~~~--  152 (269)
                      ....++.+||-+|+|. |..++.+++..+ ..+|++++.+++..+.++    ..|...-+....   .+..+.+....  
T Consensus        56 ~~~~~~~~VLDiG~G~-G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~---gda~~~l~~~~~~  131 (242)
T 3r3h_A           56 IRLTRAKKVLELGTFT-GYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRL---GPALDTLHSLLNE  131 (242)
T ss_dssp             HHHHTCSEEEEEESCC-SHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEE---SCHHHHHHHHHHH
T ss_pred             HhhcCcCEEEEeeCCc-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHhhc
Confidence            3445678999999876 888888998763 239999999886555443    345321111111   33333333321  


Q ss_pred             -CCCCccEEEEccCC---hhHHHHHHHHcccCCcEEEEEc
Q 024295          153 -HGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       153 -~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                       ....||+||-....   ...++.+.+.|++| |.++.-.
T Consensus       132 ~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~d~  170 (242)
T 3r3h_A          132 GGEHQFDFIFIDADKTNYLNYYELALKLVTPK-GLIAIDN  170 (242)
T ss_dssp             HCSSCEEEEEEESCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             cCCCCEeEEEEcCChHHhHHHHHHHHHhcCCC-eEEEEEC
Confidence             12389988743332   22477889999996 9888743

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.59  E-value=0.0063  Score=48.71  Aligned_cols=79  Identities=19%  Similarity=0.214  Sum_probs=50.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-ee--eCCCCCCCccHHHHHHhh---h
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-DF--INPDDEPNKSISELVKGI---T  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~---~  152 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+    ++.+.. ..  .|-.+  .+.+.+.+.+.   .
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   89 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL--RPEREKLMQTVSSMF   89 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCC--HHHHHHHHHHHHHHh
Confidence            4688999986 8999999998888999 999999987665543    223432 11  23222  12222222222   2


Q ss_pred             CCCCccEEEEccCC
Q 024295          153 HGMGVDYCFECTGV  166 (269)
Q Consensus       153 ~~~~~d~v~d~~g~  166 (269)
                      ++ ++|++++++|.
T Consensus        90 ~~-~id~li~~Ag~  102 (266)
T 1xq1_A           90 GG-KLDILINNLGA  102 (266)
T ss_dssp             TT-CCSEEEEECCC
T ss_pred             CC-CCcEEEECCCC
Confidence            23 79999999874

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.58  E-value=0.0093  Score=47.47  Aligned_cols=79  Identities=22%  Similarity=0.318  Sum_probs=50.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-DF--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+    ++.+.. ..  .|-.+  .+.+.+.+.+... .
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTN--TESVQNAVRSVHEQE   88 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHc
Confidence            4688999986 9999999998888899 999999987665433    223432 12  23222  1223333332211 1


Q ss_pred             CCccEEEEccC
Q 024295          155 MGVDYCFECTG  165 (269)
Q Consensus       155 ~~~d~v~d~~g  165 (269)
                      .++|++++++|
T Consensus        89 ~~id~vi~~Ag   99 (260)
T 3awd_A           89 GRVDILVACAG   99 (260)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            27999999886

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.57  E-value=0.0073  Score=48.75  Aligned_cols=37  Identities=22%  Similarity=0.270  Sum_probs=32.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcch
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWK  121 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~  121 (269)
                      +++++||+|+ +++|.+.++.+...|+ +|+.++++.++
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~   42 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVA   42 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchh
Confidence            5789999986 8999999988888999 99999988653

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=96.57  E-value=0.007  Score=48.89  Aligned_cols=79  Identities=19%  Similarity=0.194  Sum_probs=49.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---CCCce---eeCCCCCCCccHHHHHHhh-hCCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA---FGMTD---FINPDDEPNKSISELVKGI-THGM  155 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~~i~~~-~~~~  155 (269)
                      +++++||+|+ |++|.+.++.+...|+ +|++++++++..+.+++   .+...   ..|-.+   .+-.+.+.+. ....
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~~~g  105 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVADEIADGGGSAEAVVADLAD---LEGAANVAEELAATR  105 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTC---HHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCC---HHHHHHHHHHHHhcC
Confidence            5789999986 8999999998888999 89999876544443333   33221   123322   3322222221 1112


Q ss_pred             CccEEEEccCC
Q 024295          156 GVDYCFECTGV  166 (269)
Q Consensus       156 ~~d~v~d~~g~  166 (269)
                      ++|++++++|.
T Consensus       106 ~iD~lv~nAg~  116 (273)
T 3uf0_A          106 RVDVLVNNAGI  116 (273)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            79999999874

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=96.57  E-value=0.0053  Score=50.83  Aligned_cols=80  Identities=20%  Similarity=0.150  Sum_probs=52.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC--c-e--eeCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM--T-D--FINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~--~-~--v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+    .+.  . .  ..|-.+  ...+.+.+.+...
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~   83 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVAS--REGFKMAADEVEA   83 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCC--HHHHHHHHHHHHH
Confidence            4689999986 8999999988888999 99999999877665432    232  1 1  223322  1223333332211


Q ss_pred             -CCCccEEEEccCC
Q 024295          154 -GMGVDYCFECTGV  166 (269)
Q Consensus       154 -~~~~d~v~d~~g~  166 (269)
                       ..++|++++++|.
T Consensus        84 ~~g~id~lv~nAg~   97 (319)
T 3ioy_A           84 RFGPVSILCNNAGV   97 (319)
T ss_dssp             HTCCEEEEEECCCC
T ss_pred             hCCCCCEEEECCCc
Confidence             1279999999973

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=96.57  E-value=0.0037  Score=49.79  Aligned_cols=93  Identities=19%  Similarity=0.266  Sum_probs=56.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCC--CCccEEEE
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHG--MGVDYCFE  162 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~--~~~d~v~d  162 (269)
                      +++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.  .+.    .|-.+   .   +.+.+....  .++|++++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~--~~~----~Dl~~---~---~~v~~~~~~~~~~id~lv~   68 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDAEVIA--DLS----TAEGR---K---QAIADVLAKCSKGMDGLVL   68 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC--CTT----SHHHH---H---HHHHHHHTTCTTCCSEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhhcc--ccc----cCCCC---H---HHHHHHHHHhCCCCCEEEE
Confidence            46899986 8999999998888999 99999988654321  010    01110   1   122222221  27899999


Q ss_pred             ccCChh------------------HHHHHHHHccc-CCcEEEEEccCC
Q 024295          163 CTGVPS------------------LLSEALETTKV-GKGKVIVIGVGV  191 (269)
Q Consensus       163 ~~g~~~------------------~~~~~~~~l~~-~~G~~v~~g~~~  191 (269)
                      ++|...                  ..+.++..++. +.|+++.++...
T Consensus        69 ~Ag~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~  116 (257)
T 1fjh_A           69 CAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVA  116 (257)
T ss_dssp             CCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGG
T ss_pred             CCCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChh
Confidence            987532                  12334444433 138999987543

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.57  E-value=0.011  Score=47.66  Aligned_cols=77  Identities=21%  Similarity=0.262  Sum_probs=56.0

Q ss_pred             CCCCeEEEEcCC-hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           83 EKGSSVAVLGLG-TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        83 ~~~~~vlI~G~g-~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      -.|++++|+|.| .+|..++.++...|+ .|+...+..                      .++.+.++      .+|+++
T Consensus       158 l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~t----------------------~~L~~~~~------~ADIVI  208 (285)
T 3p2o_A          158 LEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIKT----------------------KDLSLYTR------QADLII  208 (285)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC----------------------SCHHHHHT------TCSEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCc----------------------hhHHHHhh------cCCEEE
Confidence            479999999975 589999999999999 788776421                      23333332      689999


Q ss_pred             EccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          162 ECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      .++|.+..+.  -+.+++| ..++.+|...
T Consensus       209 ~Avg~p~~I~--~~~vk~G-avVIDVgi~~  235 (285)
T 3p2o_A          209 VAAGCVNLLR--SDMVKEG-VIVVDVGINR  235 (285)
T ss_dssp             ECSSCTTCBC--GGGSCTT-EEEEECCCEE
T ss_pred             ECCCCCCcCC--HHHcCCC-eEEEEeccCc
Confidence            9998764332  3567885 8888888543

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.57  E-value=0.0073  Score=48.36  Aligned_cols=79  Identities=23%  Similarity=0.352  Sum_probs=51.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCce-e--eCCCCCCCccHHHHHHhhh--C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTD-F--INPDDEPNKSISELVKGIT--H  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~--~  153 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.    +.+... .  .|-.+  .++..+.+.+..  -
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   82 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS--EEAVIGTVDSVVRDF   82 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHh
Confidence            4688999986 8999999999999999 9999999877665432    224321 2  23322  122222222221  1


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      + ++|++++++|.
T Consensus        83 g-~id~lv~nAg~   94 (262)
T 1zem_A           83 G-KIDFLFNNAGY   94 (262)
T ss_dssp             S-CCCEEEECCCC
T ss_pred             C-CCCEEEECCCC
Confidence            2 79999998863

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.56  E-value=0.0031  Score=51.24  Aligned_cols=80  Identities=16%  Similarity=0.212  Sum_probs=50.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C----CCc-ee--eCCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F----GMT-DF--INPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~----g~~-~v--~~~~~~~~~~~~~~i~~~~~-  153 (269)
                      .++++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+.+ +    +.. ..  .|-.+  .++..+.+.+... 
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  108 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGD--PDQVAALFAAVRAE  108 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5789999986 8999999998888999 99999999876655432 2    111 22  23332  1222222222211 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      -.++|++++++|.
T Consensus       109 ~g~iD~lvnnAG~  121 (281)
T 4dry_A          109 FARLDLLVNNAGS  121 (281)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            0279999999874

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.56  E-value=0.023  Score=46.35  Aligned_cols=87  Identities=14%  Similarity=0.194  Sum_probs=59.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      .+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|.. +.       .+..+.+.      ..|+|+-++.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~~-------~~~~~~~~------~~D~vi~~vp   69 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLMEANVAAVVAQGAQ-AC-------ENNQKVAA------ASDIIFTSLP   69 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHTTTCE-EC-------SSHHHHHH------HCSEEEECCS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCe-ec-------CCHHHHHh------CCCEEEEECC
Confidence            479999999999998888877888 899999998888877766543 11       22333332      4789999987


Q ss_pred             ChhHHHHHH-------HHcccCCcEEEEEc
Q 024295          166 VPSLLSEAL-------ETTKVGKGKVIVIG  188 (269)
Q Consensus       166 ~~~~~~~~~-------~~l~~~~G~~v~~g  188 (269)
                      .+..+...+       ..++++ ..++.+.
T Consensus        70 ~~~~~~~v~~~~~~l~~~l~~~-~~vv~~~   98 (301)
T 3cky_A           70 NAGIVETVMNGPGGVLSACKAG-TVIVDMS   98 (301)
T ss_dssp             SHHHHHHHHHSTTCHHHHSCTT-CEEEECC
T ss_pred             CHHHHHHHHcCcchHhhcCCCC-CEEEECC
Confidence            655455444       345563 5555543

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.56  E-value=0.0086  Score=48.44  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=30.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.++++
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~   43 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA-DIAICDRC   43 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence            5789999986 8999999999999999 89999986

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=96.56  E-value=0.0099  Score=47.37  Aligned_cols=78  Identities=18%  Similarity=0.132  Sum_probs=50.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc-ee--eCCCCCCCccHHHHHHhhh--CC
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT-DF--INPDDEPNKSISELVKGIT--HG  154 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~v--~~~~~~~~~~~~~~i~~~~--~~  154 (269)
                      ++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    ..+.. ..  .|-.+  .+.+.+.+.+..  -+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD--RDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHhC
Confidence            468999986 8999999999888999 9999999877655432    23422 12  23322  122333332221  13


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                       ++|++++++|.
T Consensus        79 -~id~lv~nAg~   89 (256)
T 1geg_A           79 -GFDVIVNNAGV   89 (256)
T ss_dssp             -CCCEEEECCCC
T ss_pred             -CCCEEEECCCC
Confidence             79999998863

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.55  E-value=0.014  Score=47.53  Aligned_cols=79  Identities=11%  Similarity=0.084  Sum_probs=50.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C----CCc-ee--eCCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F----GMT-DF--INPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~----g~~-~v--~~~~~~~~~~~~~~i~~~~~-  153 (269)
                      .++++||+|+ |.+|.+.+..+...|+ +|+++++++++.+.+.+ +    +.. .+  .|-.+  .+.+.+.+.+... 
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~  101 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD--PDMVQNTVSELIKV  101 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCC--HHHHHHHHHHHHHH
Confidence            4688999986 8999999998888999 99999998776554322 2    422 12  23322  1223333322211 


Q ss_pred             CCCccEEEEccC
Q 024295          154 GMGVDYCFECTG  165 (269)
Q Consensus       154 ~~~~d~v~d~~g  165 (269)
                      ...+|++++++|
T Consensus       102 ~g~id~li~~Ag  113 (302)
T 1w6u_A          102 AGHPNIVINNAA  113 (302)
T ss_dssp             TCSCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            127899999987

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.55  E-value=0.01  Score=47.40  Aligned_cols=41  Identities=15%  Similarity=0.150  Sum_probs=34.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG  125 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~  125 (269)
                      +++++||+|+ |.+|.+.+..+...|+ +|+++++++++.+.+
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~   47 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQET   47 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            4678999986 8999999988888899 999999988766554

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.55  E-value=0.018  Score=48.51  Aligned_cols=87  Identities=21%  Similarity=0.308  Sum_probs=57.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .|++|.|+|.|.+|...++.++..|. +|++.+++. +.+.+.+.|+..         .++.+.+.      ..|+|+-+
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l~~fG~-~V~~~d~~~-~~~~~~~~g~~~---------~~l~ell~------~aDvV~l~  237 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVLSGFRA-RIRVFDPWL-PRSMLEENGVEP---------ASLEDVLT------KSDFIFVV  237 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHHTTSCC-EEEEECSSS-CHHHHHHTTCEE---------CCHHHHHH------SCSEEEEC
T ss_pred             CCCEEEEecCCcccHHHHHhhhhCCC-EEEEECCCC-CHHHHhhcCeee---------CCHHHHHh------cCCEEEEc
Confidence            37899999999999999999999999 999999874 444455566431         12222221      46777766


Q ss_pred             cCChh-H----HHHHHHHcccCCcEEEEEc
Q 024295          164 TGVPS-L----LSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       164 ~g~~~-~----~~~~~~~l~~~~G~~v~~g  188 (269)
                      +...+ +    -...+..++++ +.++.++
T Consensus       238 ~Plt~~T~~li~~~~l~~mk~g-ailIN~a  266 (365)
T 4hy3_A          238 AAVTSENKRFLGAEAFSSMRRG-AAFILLS  266 (365)
T ss_dssp             SCSSCC---CCCHHHHHTSCTT-CEEEECS
T ss_pred             CcCCHHHHhhcCHHHHhcCCCC-cEEEECc
Confidence            53211 1    13556667775 6776665

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=96.55  E-value=0.013  Score=48.54  Aligned_cols=133  Identities=9%  Similarity=0.064  Sum_probs=78.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHc-CCCeEEE-EcCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           86 SSVAVLGLGTVGLGAVDGARMH-GAAKIIG-IDKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~-g~~~v~~-~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      -++.|+|+|.+|...+..++.. +. ++++ .++++++.+. ++++|....+       .++.+.+    ....+|+|+.
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~-~~~av~d~~~~~~~~~a~~~~~~~~~-------~~~~~ll----~~~~~D~V~i   73 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNG-EVVAVSSRTLESAQAFANKYHLPKAY-------DKLEDML----ADESIDVIYV   73 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSE-EEEEEECSCSSTTCC---CCCCSCEE-------SCHHHHH----TCTTCCEEEE
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCc-EEEEEEcCCHHHHHHHHHHcCCCccc-------CCHHHHh----cCCCCCEEEE
Confidence            3689999999998766665544 55 5554 4667666554 3446654333       2333333    2347999999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      ++....+...+..++..  |+-|++..+... ..-....+.    .++..+.-...  +.....+..+.+++.+|.+
T Consensus        74 ~tp~~~h~~~~~~al~a--Gk~Vl~EKP~a~-~~~e~~~l~~~a~~~~~~~~v~~~--~r~~p~~~~~~~~i~~g~i  145 (329)
T 3evn_A           74 ATINQDHYKVAKAALLA--GKHVLVEKPFTL-TYDQANELFALAESCNLFLMEAQK--SVFIPMTQVIKKLLASGEI  145 (329)
T ss_dssp             CSCGGGHHHHHHHHHHT--TCEEEEESSCCS-SHHHHHHHHHHHHHTTCCEEEECS--SCSSHHHHHHHHHHHTTTT
T ss_pred             CCCcHHHHHHHHHHHHC--CCeEEEccCCcC-CHHHHHHHHHHHHHcCCEEEEEEc--ccCCHHHHHHHHHHhCCCC
Confidence            99887777777777777  566777655421 111111221    23444432221  1122457888899998876

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.55  E-value=0.0022  Score=50.55  Aligned_cols=99  Identities=14%  Similarity=0.065  Sum_probs=63.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC---ceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM---TDFINPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      .+++.+||-+|+|. |..+..+++... .+|++++.+++..+.+++...   ..+ ....   .++.+....+.+ ..||
T Consensus        58 ~~~~~~vLDiGcGt-G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v-~~~~---~d~~~~~~~~~~-~~fD  130 (236)
T 1zx0_A           58 SSKGGRVLEVGFGM-AIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKV-IPLK---GLWEDVAPTLPD-GHFD  130 (236)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEE-EEEE---SCHHHHGGGSCT-TCEE
T ss_pred             CCCCCeEEEEeccC-CHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCe-EEEe---cCHHHhhcccCC-CceE
Confidence            46788999999985 777777755433 489999999988888766321   111 1111   334332222222 3799


Q ss_pred             EEEE-ccC----Ch------hHHHHHHHHcccCCcEEEEEc
Q 024295          159 YCFE-CTG----VP------SLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       159 ~v~d-~~g----~~------~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +|+- +..    ..      ..+.++.+.|++| |+++.+.
T Consensus       131 ~V~~d~~~~~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~~~~  170 (236)
T 1zx0_A          131 GILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYCN  170 (236)
T ss_dssp             EEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEECC
T ss_pred             EEEECCcccchhhhhhhhHHHHHHHHHHhcCCC-eEEEEEe
Confidence            9986 222    11      1267889999996 9998764

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=96.55  E-value=0.0026  Score=50.09  Aligned_cols=100  Identities=14%  Similarity=0.116  Sum_probs=64.7

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccHHHHHH-h
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSISELVK-G  150 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~-~  150 (269)
                      .....++.+||-+|+|. |..+..+++.....+|++++.+++..+.+++    .+..   .++..      +..+.+. .
T Consensus        66 ~~~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~------d~~~~~~~~  138 (232)
T 3ntv_A           66 LIRMNNVKNILEIGTAI-GYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEG------NALEQFENV  138 (232)
T ss_dssp             HHHHHTCCEEEEECCSS-SHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEES------CGGGCHHHH
T ss_pred             HHhhcCCCEEEEEeCch-hHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC------CHHHHHHhh
Confidence            34455788999999876 8888888885533399999999988877765    3422   22222      2222222 2


Q ss_pred             hhCCCCccEEEEccCC---hhHHHHHHHHcccCCcEEEEEc
Q 024295          151 ITHGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       151 ~~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      . ++ .||+|+-....   ...+..+.+.|++| |.++.-.
T Consensus       139 ~-~~-~fD~V~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~d~  176 (232)
T 3ntv_A          139 N-DK-VYDMIFIDAAKAQSKKFFEIYTPLLKHQ-GLVITDN  176 (232)
T ss_dssp             T-TS-CEEEEEEETTSSSHHHHHHHHGGGEEEE-EEEEEEC
T ss_pred             c-cC-CccEEEEcCcHHHHHHHHHHHHHhcCCC-eEEEEee
Confidence            2 23 89998743322   33467888999996 9987743

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=96.54  E-value=0.0077  Score=47.99  Aligned_cols=78  Identities=23%  Similarity=0.214  Sum_probs=48.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHH---HHhCCCce-ee--CCCCCCCccHHHHHHhhhCC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEK---GKAFGMTD-FI--NPDDEPNKSISELVKGITHG-M  155 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~---~~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~~-~  155 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|++++++++ .+.   +++.+... .+  |-.+  .+.+.+.+.+.... .
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~-~~~~~~l~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g   78 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDP-APALAEIARHGVKAVHHPADLSD--VAQIEALFALAEREFG   78 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCC-HHHHHHHHTTSCCEEEECCCTTS--HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch-HHHHHHHHhcCCceEEEeCCCCC--HHHHHHHHHHHHHHcC
Confidence            4678999986 8999999998888999 9999998765 222   22334322 22  2222  12232223222110 2


Q ss_pred             CccEEEEccC
Q 024295          156 GVDYCFECTG  165 (269)
Q Consensus       156 ~~d~v~d~~g  165 (269)
                      ++|++++++|
T Consensus        79 ~id~lv~~Ag   88 (255)
T 2q2v_A           79 GVDILVNNAG   88 (255)
T ss_dssp             SCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999987

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=96.54  E-value=0.0023  Score=52.75  Aligned_cols=96  Identities=16%  Similarity=0.187  Sum_probs=61.4

Q ss_pred             CCCCeEEEEcCC-hhHHHHHHHHHHcCCCeEEEEcCCcchH-HHHHhCCCc-eee---C-CCCCCCccHHHHHHhhhCCC
Q 024295           83 EKGSSVAVLGLG-TVGLGAVDGARMHGAAKIIGIDKNPWKK-EKGKAFGMT-DFI---N-PDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        83 ~~~~~vlI~G~g-~~G~~a~~la~~~g~~~v~~~~~~~~~~-~~~~~~g~~-~v~---~-~~~~~~~~~~~~i~~~~~~~  155 (269)
                      -.+++++|+|.| .+|..+++++...|+ .|++.+++..+. +...+++.. +..   . .++   .++.+.++      
T Consensus       175 l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~---~~L~e~l~------  244 (320)
T 1edz_A          175 LYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSE---DLLKKCSL------  244 (320)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSEEEEEESCCCSSCCCCEEEEEEECCH---HHHHHHHH------
T ss_pred             CCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCchHHHHhHHHHHhhhcccccccccccH---hHHHHHhc------
Confidence            368999999998 469999999999998 899888774322 222233321 100   0 100   23444443      


Q ss_pred             CccEEEEccCChhH-HHHHHHHcccCCcEEEEEccCC
Q 024295          156 GVDYCFECTGVPSL-LSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       156 ~~d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      .+|+|+-++|.+.. +..  +.+++| ..++.+|.+.
T Consensus       245 ~ADIVIsAtg~p~~vI~~--e~vk~G-avVIDVgi~r  278 (320)
T 1edz_A          245 DSDVVITGVPSENYKFPT--EYIKEG-AVCINFACTK  278 (320)
T ss_dssp             HCSEEEECCCCTTCCBCT--TTSCTT-EEEEECSSSC
T ss_pred             cCCEEEECCCCCcceeCH--HHcCCC-eEEEEcCCCc
Confidence            68999999998643 222  336885 8888888654

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=96.54  E-value=0.04  Score=46.32  Aligned_cols=90  Identities=19%  Similarity=0.240  Sum_probs=62.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      ..+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|...   .     .+..+.+.+.   ...|+||-++
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~---~-----~s~~e~~~~a---~~~DvVi~~v   89 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGIAG---A-----RSIEEFCAKL---VKPRVVWLMV   89 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCBC---C-----SSHHHHHHHS---CSSCEEEECS
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCEE---e-----CCHHHHHhcC---CCCCEEEEeC
Confidence            4679999999999999888888898 9999999999988887776431   1     3343444332   1458999888


Q ss_pred             CChhHHHHHHH----HcccCCcEEEEEc
Q 024295          165 GVPSLLSEALE----TTKVGKGKVIVIG  188 (269)
Q Consensus       165 g~~~~~~~~~~----~l~~~~G~~v~~g  188 (269)
                      ... .+...++    .++++ ..++..+
T Consensus        90 p~~-~v~~vl~~l~~~l~~g-~iiId~s  115 (358)
T 4e21_A           90 PAA-VVDSMLQRMTPLLAAN-DIVIDGG  115 (358)
T ss_dssp             CGG-GHHHHHHHHGGGCCTT-CEEEECS
T ss_pred             CHH-HHHHHHHHHHhhCCCC-CEEEeCC
Confidence            765 4344333    34453 4555544

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=96.54  E-value=0.026  Score=43.57  Aligned_cols=97  Identities=15%  Similarity=0.106  Sum_probs=64.5

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC--ceeeCCCCCCCccHHHHHHhhhCCC
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM--TDFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      ......++.+||-+|+|. |..+..+++. +. ++++++.+++..+.+++.-.  ..++..+-   .++     . .. .
T Consensus        39 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~---~~~-----~-~~-~  105 (220)
T 3hnr_A           39 EDVVNKSFGNVLEFGVGT-GNLTNKLLLA-GR-TVYGIEPSREMRMIAKEKLPKEFSITEGDF---LSF-----E-VP-T  105 (220)
T ss_dssp             HHHHHTCCSEEEEECCTT-SHHHHHHHHT-TC-EEEEECSCHHHHHHHHHHSCTTCCEESCCS---SSC-----C-CC-S
T ss_pred             HHhhccCCCeEEEeCCCC-CHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHhCCCceEEEeCCh---hhc-----C-CC-C
Confidence            334455889999999876 7777777776 77 99999999988888876421  12222211   111     0 11 3


Q ss_pred             CccEEEEccC-----Ch---hHHHHHHHHcccCCcEEEEEc
Q 024295          156 GVDYCFECTG-----VP---SLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       156 ~~d~v~d~~g-----~~---~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .||+|+-...     .+   ..+..+.+.+++| |.++...
T Consensus       106 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~  145 (220)
T 3hnr_A          106 SIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKG-GKIVFAD  145 (220)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             CeEEEEECcchhcCChHHHHHHHHHHHHhcCCC-CEEEEEe
Confidence            8999975431     11   1578888999996 9988764

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=96.54  E-value=0.011  Score=44.05  Aligned_cols=98  Identities=13%  Similarity=0.073  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccHHHHHHhhhCC
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      ..++.+||-+|+|. |..+..+++. +..+|++++.+++..+.+++    .+..   .++.      .++.+.+... ++
T Consensus        29 ~~~~~~vLDlGcG~-G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~------~d~~~~~~~~-~~   99 (177)
T 2esr_A           29 YFNGGRVLDLFAGS-GGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK------MEAERAIDCL-TG   99 (177)
T ss_dssp             CCCSCEEEEETCTT-CHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC------SCHHHHHHHB-CS
T ss_pred             hcCCCeEEEeCCCC-CHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEE------CcHHHhHHhh-cC
Confidence            66889999999875 7777777776 55599999999988877765    3322   2221      3444433322 23


Q ss_pred             CCccEEEEccCC-----hhHHHHHH--HHcccCCcEEEEEccC
Q 024295          155 MGVDYCFECTGV-----PSLLSEAL--ETTKVGKGKVIVIGVG  190 (269)
Q Consensus       155 ~~~d~v~d~~g~-----~~~~~~~~--~~l~~~~G~~v~~g~~  190 (269)
                       .||+|+-....     ...+..+.  +.|+++ |.++..-..
T Consensus       100 -~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~g-G~l~~~~~~  140 (177)
T 2esr_A          100 -RFDLVFLDPPYAKETIVATIEALAAKNLLSEQ-VMVVCETDK  140 (177)
T ss_dssp             -CEEEEEECCSSHHHHHHHHHHHHHHTTCEEEE-EEEEEEEET
T ss_pred             -CCCEEEECCCCCcchHHHHHHHHHhCCCcCCC-cEEEEEECC
Confidence             69998854221     12334444  678896 988776433

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=96.53  E-value=0.0059  Score=47.52  Aligned_cols=102  Identities=20%  Similarity=0.191  Sum_probs=62.8

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhC
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMH--GAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~--g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      ....++.+||-+|+|. |..++.+++.+  +. +|++++.+++..+.+++    .|...-+....   .+..+.+.....
T Consensus        54 ~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~l~~~~~  128 (221)
T 3u81_A           54 IREYSPSLVLELGAYC-GYSAVRMARLLQPGA-RLLTMEINPDCAAITQQMLNFAGLQDKVTILN---GASQDLIPQLKK  128 (221)
T ss_dssp             HHHHCCSEEEEECCTT-SHHHHHHHTTSCTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE---SCHHHHGGGTTT
T ss_pred             HHhcCCCEEEEECCCC-CHHHHHHHHhCCCCC-EEEEEeCChHHHHHHHHHHHHcCCCCceEEEE---CCHHHHHHHHHH
Confidence            3445678999999886 88888888865  45 99999999988887765    34321111111   344443433321


Q ss_pred             ---CCCccEEEEccCChhH------HHHHHHHcccCCcEEEEEc
Q 024295          154 ---GMGVDYCFECTGVPSL------LSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       154 ---~~~~d~v~d~~g~~~~------~~~~~~~l~~~~G~~v~~g  188 (269)
                         ...||+||-.......      +..+ +.+++| |.++.-.
T Consensus       129 ~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~Lkpg-G~lv~~~  170 (221)
T 3u81_A          129 KYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKG-TVLLADN  170 (221)
T ss_dssp             TSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTT-CEEEESC
T ss_pred             hcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCC-eEEEEeC
Confidence               1379999743322211      1122 688996 9887643

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.53  E-value=0.008  Score=48.46  Aligned_cols=80  Identities=20%  Similarity=0.316  Sum_probs=52.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCceee---CCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTDFI---NPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~v~---~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+.    +.+....+   |-.+  .++..+.+.+... .
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~  101 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTS--ESEIIEAFARLDEQG  101 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHC
Confidence            5788999986 8999999998888999 9999999887665442    23433222   2222  1223222322211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus       102 g~iD~lv~nAg~  113 (271)
T 4ibo_A          102 IDVDILVNNAGI  113 (271)
T ss_dssp             CCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999999874

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=96.53  E-value=0.0051  Score=49.27  Aligned_cols=80  Identities=19%  Similarity=0.271  Sum_probs=51.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcC---CCeEEEEcCCcchHHHHHhC---CCc-ee--eCCCCCCCccHHHHHHhh--
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHG---AAKIIGIDKNPWKKEKGKAF---GMT-DF--INPDDEPNKSISELVKGI--  151 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g---~~~v~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~~~i~~~--  151 (269)
                      +++++||+|+ |.+|.+.++.+...|   + +|+++++++++.+.++++   +.. .+  .|-.+  .+.+.+.+.+.  
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~   96 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN--FDAYDKLVADIEG   96 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC--GGGHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhHHHHHhhccCCceEEEEecCCC--hHHHHHHHHHHHH
Confidence            4678999986 999999999888888   7 999999987765544332   221 12  23322  23333333322  


Q ss_pred             -hCCCCccEEEEccCC
Q 024295          152 -THGMGVDYCFECTGV  166 (269)
Q Consensus       152 -~~~~~~d~v~d~~g~  166 (269)
                       .+..++|++++++|.
T Consensus        97 ~~g~~~id~li~~Ag~  112 (267)
T 1sny_A           97 VTKDQGLNVLFNNAGI  112 (267)
T ss_dssp             HHGGGCCSEEEECCCC
T ss_pred             hcCCCCccEEEECCCc
Confidence             221159999999873

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=96.53  E-value=0.0081  Score=50.71  Aligned_cols=116  Identities=16%  Similarity=0.171  Sum_probs=73.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc----ch---HHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP----WK---KEKGKA-FGMTDFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~----~~---~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      ++.+|+|+|+|..|..+++++..+|+++|+.+|++-    ++   ++..++ +...  .+... ...++.+.++      
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~--~~~~~-~~~~L~eav~------  257 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKV--TNREF-KSGTLEDALE------  257 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHH--HSCTT-CCCSCSHHHH------
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhc--cCccc-chhhHHHHhc------
Confidence            568999999999999999999999999999999762    11   222211 1111  01000 0144555554      


Q ss_pred             CccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEee
Q 024295          156 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGT  212 (269)
Q Consensus       156 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  212 (269)
                      +.|++|-+.+....-++.++.++++ ..++.+..+..   +..+...+.-+..+..+
T Consensus       258 ~ADV~IG~Sapgl~T~EmVk~Ma~~-pIIfalsNPt~---E~~pe~a~~~g~~i~at  310 (398)
T 2a9f_A          258 GADIFIGVSAPGVLKAEWISKMAAR-PVIFAMANPIP---EIYPDEALEAGAYIVGT  310 (398)
T ss_dssp             TTCSEEECCSTTCCCHHHHHTSCSS-CEEEECCSSSC---SSCHHHHHTTTCSEEEE
T ss_pred             cCCEEEecCCCCCCCHHHHHhhCCC-CEEEECCCCCc---cCCHHHHHHhCCeEEEe
Confidence            5699999876433457888999995 88888887652   44444444334445544

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.53  E-value=0.015  Score=46.93  Aligned_cols=77  Identities=22%  Similarity=0.289  Sum_probs=56.7

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           83 EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        83 ~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      -.|++++|+|. +.+|..++.++...|+ .|+...+.                   .   .++.+.++      .+|+++
T Consensus       159 l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~hs~-------------------T---~~L~~~~~------~ADIVI  209 (286)
T 4a5o_A          159 LYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTHRF-------------------T---RDLADHVS------RADLVV  209 (286)
T ss_dssp             CTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEECTT-------------------C---SCHHHHHH------TCSEEE
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCC-------------------C---cCHHHHhc------cCCEEE
Confidence            47999999997 4589999999999999 88777532                   1   33444443      679999


Q ss_pred             EccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          162 ECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      .++|.+..+.  -+.+++| ..++.+|...
T Consensus       210 ~Avg~p~~I~--~~~vk~G-avVIDvgi~~  236 (286)
T 4a5o_A          210 VAAGKPGLVK--GEWIKEG-AIVIDVGINR  236 (286)
T ss_dssp             ECCCCTTCBC--GGGSCTT-CEEEECCSCS
T ss_pred             ECCCCCCCCC--HHHcCCC-eEEEEecccc
Confidence            9998764432  2557886 8888888654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=96.52  E-value=0.0086  Score=46.05  Aligned_cols=94  Identities=16%  Similarity=0.129  Sum_probs=64.0

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CCceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GMTDFINPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      ..+.++.+||-+|+|. |..+..+++. |. ++++++.+++..+.+++. +...+..       ++    .++.....||
T Consensus        39 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~-------d~----~~~~~~~~fD  104 (211)
T 3e23_A           39 GELPAGAKILELGCGA-GYQAEAMLAA-GF-DVDATDGSPELAAEASRRLGRPVRTM-------LF----HQLDAIDAYD  104 (211)
T ss_dssp             TTSCTTCEEEESSCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHTSCCEEC-------CG----GGCCCCSCEE
T ss_pred             HhcCCCCcEEEECCCC-CHHHHHHHHc-CC-eEEEECCCHHHHHHHHHhcCCceEEe-------ee----ccCCCCCcEE
Confidence            4566889999999876 7777777776 77 999999999888888764 4332221       11    0111234899


Q ss_pred             EEEEccCC--------hhHHHHHHHHcccCCcEEEEEc
Q 024295          159 YCFECTGV--------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       159 ~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +|+-...-        ...+..+.+.+++| |+++..-
T Consensus       105 ~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  141 (211)
T 3e23_A          105 AVWAHACLLHVPRDELADVLKLIWRALKPG-GLFYASY  141 (211)
T ss_dssp             EEEECSCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             EEEecCchhhcCHHHHHHHHHHHHHhcCCC-cEEEEEE
Confidence            99854311        23578888999996 9887763

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=96.51  E-value=0.023  Score=46.85  Aligned_cols=139  Identities=14%  Similarity=0.210  Sum_probs=79.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhh-CCCCccEEEEc
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGIT-HGMGVDYCFEC  163 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~-~~~~~d~v~d~  163 (269)
                      -++.|+|+ |.+|..-+...+..+.+-+.+.++++++....+.++...++..-    +++.+.+.++. ....+|+|+-|
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~----~~ll~~~~~l~~~~~~vD~V~I~   79 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEP----EAFEAYLEDLRDRGEGVDYLSIA   79 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCH----HHHHHHHHHHHHTTCCCSEEEEC
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCH----HHHHHHhhhhcccCCCCcEEEEC
Confidence            36889998 67898877777777873444455666664334445444444221    22221111111 33489999999


Q ss_pred             cCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHHCC
Q 024295          164 TGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCKNK  233 (269)
Q Consensus       164 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g  233 (269)
                      +....+.+.+..+++.  |+-|++..+.. ...-....+.    .++..+.-...  +.....+..+.+++++|
T Consensus        80 tP~~~H~~~~~~al~a--GkhVl~EKPla-~~~~ea~~l~~~a~~~g~~~~v~~~--~R~~p~~~~~k~~i~~g  148 (312)
T 3o9z_A           80 SPNHLHYPQIRMALRL--GANALSEKPLV-LWPEEIARLKELEARTGRRVYTVLQ--LRVHPSLLALKERLGQE  148 (312)
T ss_dssp             SCGGGHHHHHHHHHHT--TCEEEECSSSC-SCHHHHHHHHHHHHHHCCCEEECCG--GGGCHHHHHHHHHHHTC
T ss_pred             CCchhhHHHHHHHHHC--CCeEEEECCCC-CCHHHHHHHHHHHHHcCCEEEEEee--hhcCHHHHHHHHHHHcC
Confidence            9888788888888887  67778876543 1111122222    23443322211  11234577888888887

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=96.51  E-value=0.0067  Score=48.03  Aligned_cols=80  Identities=19%  Similarity=0.225  Sum_probs=50.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCC---Ccee--eCCCCCCCccHHHHHHhhhC-CC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFG---MTDF--INPDDEPNKSISELVKGITH-GM  155 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g---~~~v--~~~~~~~~~~~~~~i~~~~~-~~  155 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. ++.   ...+  .|..+  ++.+.+.+.+... -.
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   81 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD--EDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhccCceEEEECCCCC--HHHHHHHHHHHHHHhC
Confidence            4678999986 9999999998888999 9999999877665442 222   1112  23222  1223222222211 02


Q ss_pred             CccEEEEccCC
Q 024295          156 GVDYCFECTGV  166 (269)
Q Consensus       156 ~~d~v~d~~g~  166 (269)
                      ++|++++++|.
T Consensus        82 ~id~li~~Ag~   92 (251)
T 1zk4_A           82 PVSTLVNNAGI   92 (251)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999873

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.51  E-value=0.02  Score=46.43  Aligned_cols=41  Identities=27%  Similarity=0.351  Sum_probs=36.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA  127 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~  127 (269)
                      ++|.|+|+|.+|...++.+...|. +|+..++++++.+.+++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~   45 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKK   45 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH
Confidence            579999999999999999999999 99999999988776654

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=96.51  E-value=0.018  Score=49.60  Aligned_cols=106  Identities=22%  Similarity=0.248  Sum_probs=67.9

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-----------HhCC--Cc--eeeCCCCCC
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-----------KAFG--MT--DFINPDDEP  140 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-----------~~~g--~~--~v~~~~~~~  140 (269)
                      +.....++++++||-+|+|. |..++.+++..+..+|++++.+++..+.+           +.+|  ..  .++.... .
T Consensus       234 ml~~l~l~~g~~VLDLGCGs-G~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~-~  311 (433)
T 1u2z_A          234 VYQQCQLKKGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS-F  311 (433)
T ss_dssp             HHHHTTCCTTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC-S
T ss_pred             HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc-c
Confidence            44567788999999999986 99999999988876899999998765544           3345  22  2222111 0


Q ss_pred             CccHHHHHHhhhCCCCccEEEEc--cCCh---hHHHHHHHHcccCCcEEEEEc
Q 024295          141 NKSISELVKGITHGMGVDYCFEC--TGVP---SLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       141 ~~~~~~~i~~~~~~~~~d~v~d~--~g~~---~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ...+  .+... .+ .||+|+-.  ...+   ..+..+.+.|++| |+++...
T Consensus       312 ~~~~--~~~~~-~~-~FDvIvvn~~l~~~d~~~~L~el~r~LKpG-G~lVi~d  359 (433)
T 1u2z_A          312 VDNN--RVAEL-IP-QCDVILVNNFLFDEDLNKKVEKILQTAKVG-CKIISLK  359 (433)
T ss_dssp             TTCH--HHHHH-GG-GCSEEEECCTTCCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred             cccc--ccccc-cC-CCCEEEEeCccccccHHHHHHHHHHhCCCC-eEEEEee
Confidence            0111  11111 12 79999842  2222   2356888899997 9998874

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.50  E-value=0.015  Score=50.51  Aligned_cols=102  Identities=20%  Similarity=0.221  Sum_probs=65.9

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhC
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      ...++++++||-+|+|+ |..+++++..++ ...|++++.++++.+.+++    +|...+.-..    .+..+ +....+
T Consensus       100 ~L~~~~g~~VLDlcaGp-Ggkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~----~Da~~-l~~~~~  173 (456)
T 3m4x_A          100 AAAAKPGEKVLDLCAAP-GGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTN----HAPAE-LVPHFS  173 (456)
T ss_dssp             HHCCCTTCEEEESSCTT-CHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEEC----CCHHH-HHHHHT
T ss_pred             HcCCCCCCEEEEECCCc-CHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEe----CCHHH-hhhhcc
Confidence            44678899999998876 666777777653 2489999999988887754    5654322111    22222 222123


Q ss_pred             CCCccEEE-E--ccCCh-------------------------hHHHHHHHHcccCCcEEEEEc
Q 024295          154 GMGVDYCF-E--CTGVP-------------------------SLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       154 ~~~~d~v~-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      + .||.|+ |  |+|..                         ..+..+++.+++| |+++...
T Consensus       174 ~-~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG-G~LvYsT  234 (456)
T 3m4x_A          174 G-FFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNK-GQLIYST  234 (456)
T ss_dssp             T-CEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             c-cCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEE
Confidence            3 799887 4  33321                         3467888899996 9988643

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.50  E-value=0.0055  Score=49.95  Aligned_cols=36  Identities=25%  Similarity=0.376  Sum_probs=31.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      ++.+|+|+|+|++|..+++.+...|..++..+|.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            467999999999999999999999998999998654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.49  E-value=0.037  Score=40.22  Aligned_cols=94  Identities=9%  Similarity=0.004  Sum_probs=58.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC-cchHHHHHh---CCCceee-CCCCCCCccHHHHHHhhhCCCCccE
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN-PWKKEKGKA---FGMTDFI-NPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~-~~~~~~~~~---~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      ..+++|.|+|.+|...++.+...|. +|++++++ +++.+.+++   .|...+. |..+   .+   .+.+. +-.++|.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~---~~---~l~~a-~i~~ad~   74 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNADVIPGDSND---SS---VLKKA-GIDRCRA   74 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCEEEESCTTS---HH---HHHHH-TTTTCSE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhcCCCeEEEcCCCC---HH---HHHHc-ChhhCCE
Confidence            4679999999999999999998898 99999987 455554443   3444333 2211   22   23332 1137899


Q ss_pred             EEEccCChhH---HHHHHHHcccCCcEEEEE
Q 024295          160 CFECTGVPSL---LSEALETTKVGKGKVIVI  187 (269)
Q Consensus       160 v~d~~g~~~~---~~~~~~~l~~~~G~~v~~  187 (269)
                      ++-+++....   .....+.+.+. .+++..
T Consensus        75 vi~~~~~d~~n~~~~~~a~~~~~~-~~ii~~  104 (153)
T 1id1_A           75 ILALSDNDADNAFVVLSAKDMSSD-VKTVLA  104 (153)
T ss_dssp             EEECSSCHHHHHHHHHHHHHHTSS-SCEEEE
T ss_pred             EEEecCChHHHHHHHHHHHHHCCC-CEEEEE
Confidence            9999987533   22233344442 455543

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=96.49  E-value=0.02  Score=49.12  Aligned_cols=102  Identities=14%  Similarity=0.148  Sum_probs=69.6

Q ss_pred             HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCC
Q 024295           77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      .....+.++.+||-+|+|. |..+..+++ .|. +|++++.+++..+.+++.+.......-.   .+..+.+. ..++ .
T Consensus       100 ~~~~~~~~~~~VLDiGcG~-G~~~~~l~~-~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~---~~~~~~l~-~~~~-~  171 (416)
T 4e2x_A          100 LATELTGPDPFIVEIGCND-GIMLRTIQE-AGV-RHLGFEPSSGVAAKAREKGIRVRTDFFE---KATADDVR-RTEG-P  171 (416)
T ss_dssp             HHTTTCSSSCEEEEETCTT-TTTHHHHHH-TTC-EEEEECCCHHHHHHHHTTTCCEECSCCS---HHHHHHHH-HHHC-C
T ss_pred             HHHhCCCCCCEEEEecCCC-CHHHHHHHH-cCC-cEEEECCCHHHHHHHHHcCCCcceeeec---hhhHhhcc-cCCC-C
Confidence            3445667889999999876 666666665 477 9999999999999998887554433221   22222222 1123 8


Q ss_pred             ccEEEEccC------ChhHHHHHHHHcccCCcEEEEE
Q 024295          157 VDYCFECTG------VPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       157 ~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      ||+|+-.-.      -...+..+.+.|++| |+++..
T Consensus       172 fD~I~~~~vl~h~~d~~~~l~~~~r~Lkpg-G~l~i~  207 (416)
T 4e2x_A          172 ANVIYAANTLCHIPYVQSVLEGVDALLAPD-GVFVFE  207 (416)
T ss_dssp             EEEEEEESCGGGCTTHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             EEEEEECChHHhcCCHHHHHHHHHHHcCCC-eEEEEE
Confidence            999975332      133578899999996 998864

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.49  E-value=0.01  Score=47.57  Aligned_cols=79  Identities=14%  Similarity=0.109  Sum_probs=51.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----CCCc--ee--eCCCCCCCccHHHHHHhhh-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-----FGMT--DF--INPDDEPNKSISELVKGIT-  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-----~g~~--~v--~~~~~~~~~~~~~~i~~~~-  152 (269)
                      +++++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+     .+..  ..  .|-.+  .++..+.+.+.. 
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~   83 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLD--ALQVRAFAEACER   83 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCC--HHHHHHHHHHHHH
Confidence            4788999986 8999999998888999 89999998876654422     3321  12  23332  122222222221 


Q ss_pred             -CCCCccEEEEccCC
Q 024295          153 -HGMGVDYCFECTGV  166 (269)
Q Consensus       153 -~~~~~d~v~d~~g~  166 (269)
                       -+ ++|++++++|.
T Consensus        84 ~~g-~id~lvnnAg~   97 (265)
T 3lf2_A           84 TLG-CASILVNNAGQ   97 (265)
T ss_dssp             HHC-SCSEEEECCCC
T ss_pred             HcC-CCCEEEECCCC
Confidence             12 79999999874

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.49  E-value=0.015  Score=47.22  Aligned_cols=94  Identities=17%  Similarity=0.178  Sum_probs=61.7

Q ss_pred             cccchhhhHHHHHHhcCCCCCCeEEEEcCC-hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCcc
Q 024295           65 LSCGFTTGYGAAWKEAKVEKGSSVAVLGLG-TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKS  143 (269)
Q Consensus        65 ~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g-~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~  143 (269)
                      ++|+..-+...|.+..---.|++++|+|.| .+|..++.++...|+ .|+...+..                      .+
T Consensus       145 ~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~T----------------------~~  201 (300)
T 4a26_A          145 TPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSGT----------------------ST  201 (300)
T ss_dssp             CCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTS----------------------CH
T ss_pred             CCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCC----------------------CC
Confidence            444333333333333333479999999975 589999999999999 888886522                      12


Q ss_pred             HH--HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccC
Q 024295          144 IS--ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       144 ~~--~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      +.  +.++      .+|+++.++|.+..+.  -+.+++| ..++.+|..
T Consensus       202 l~l~~~~~------~ADIVI~Avg~p~~I~--~~~vk~G-avVIDvgi~  241 (300)
T 4a26_A          202 EDMIDYLR------TADIVIAAMGQPGYVK--GEWIKEG-AAVVDVGTT  241 (300)
T ss_dssp             HHHHHHHH------TCSEEEECSCCTTCBC--GGGSCTT-CEEEECCCE
T ss_pred             chhhhhhc------cCCEEEECCCCCCCCc--HHhcCCC-cEEEEEecc
Confidence            22  2222      6799999998764432  2457886 888888854

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=96.48  E-value=0.021  Score=47.69  Aligned_cols=134  Identities=11%  Similarity=0.003  Sum_probs=79.9

Q ss_pred             CCeEEEEcCC-hhHHHHHHHHHHc--CCCeEE-EEcCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           85 GSSVAVLGLG-TVGLGAVDGARMH--GAAKII-GIDKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        85 ~~~vlI~G~g-~~G~~a~~la~~~--g~~~v~-~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      .-+|.|+|+| .+|..-+..++..  ++ +++ +.++++++.+. ++++|...++       .++.+.+.    ...+|+
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~-~lvav~d~~~~~~~~~a~~~~~~~~~-------~~~~~ll~----~~~vD~   85 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLF-EITAVTSRTRSHAEEFAKMVGNPAVF-------DSYEELLE----SGLVDA   85 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTE-EEEEEECSSHHHHHHHHHHHSSCEEE-------SCHHHHHH----SSCCSE
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCce-EEEEEEcCCHHHHHHHHHHhCCCccc-------CCHHHHhc----CCCCCE
Confidence            3468899999 7887666666654  45 554 45666666655 4557754444       33444333    237999


Q ss_pred             EEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          160 CFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       160 v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      |+.|+....+.+.+..+++.  |+-|++..+... ..-....+.    .++..+.-...  +.....+..+.+++++|.+
T Consensus        86 V~i~tp~~~H~~~~~~al~a--GkhVl~EKPla~-~~~ea~~l~~~a~~~g~~~~v~~~--~R~~p~~~~~k~~i~~g~i  160 (340)
T 1zh8_A           86 VDLTLPVELNLPFIEKALRK--GVHVICEKPIST-DVETGKKVVELSEKSEKTVYIAEN--FRHVPAFWKAKELVESGAI  160 (340)
T ss_dssp             EEECCCGGGHHHHHHHHHHT--TCEEEEESSSSS-SHHHHHHHHHHHHHCSSCEEEECG--GGGCHHHHHHHHHHHTTTT
T ss_pred             EEEeCCchHHHHHHHHHHHC--CCcEEEeCCCCC-CHHHHHHHHHHHHHcCCeEEEEec--ccCCHHHHHHHHHHhcCCC
Confidence            99999887777788888877  677777655421 111111122    23443332221  1123457888899988875

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.47  E-value=0.028  Score=45.61  Aligned_cols=74  Identities=18%  Similarity=0.253  Sum_probs=50.3

Q ss_pred             CCCCeEEEEc-CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hC----CCc-eeeCCCCCCCccHHHHHHhhhCCC
Q 024295           83 EKGSSVAVLG-LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AF----GMT-DFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        83 ~~~~~vlI~G-~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~----g~~-~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      -+++++||+| +|++|.+++..+...|+ +|+.+++++++.+.+. ++    +.. ...+..+   .+   .+.+...  
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~---~~---~~~~~~~--  187 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD---DA---SRAEAVK--  187 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS---HH---HHHHHTT--
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCC---HH---HHHHHHH--
Confidence            3678999999 69999999999999999 7999999877665442 22    222 1223322   22   2333322  


Q ss_pred             CccEEEEccC
Q 024295          156 GVDYCFECTG  165 (269)
Q Consensus       156 ~~d~v~d~~g  165 (269)
                      .+|+++++++
T Consensus       188 ~~DvlVn~ag  197 (287)
T 1lu9_A          188 GAHFVFTAGA  197 (287)
T ss_dssp             TCSEEEECCC
T ss_pred             hCCEEEECCC
Confidence            5899999996

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.47  E-value=0.012  Score=47.30  Aligned_cols=93  Identities=14%  Similarity=0.120  Sum_probs=63.3

Q ss_pred             ccccchhhhHHHHHHhcCCCCCCeEEEEcCC-hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCc
Q 024295           64 FLSCGFTTGYGAAWKEAKVEKGSSVAVLGLG-TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNK  142 (269)
Q Consensus        64 ~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g-~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  142 (269)
                      ++||+.......+.+. . -.|++++|+|.| .+|..++.++...|+ .|+...+.                   .   .
T Consensus       131 ~~PcTp~gv~~lL~~~-~-l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~-------------------t---~  185 (276)
T 3ngx_A          131 LVPATPRAVIDIMDYY-G-YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSK-------------------T---K  185 (276)
T ss_dssp             SCCHHHHHHHHHHHHH-T-CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT-------------------C---S
T ss_pred             CCCCcHHHHHHHHHHh-C-cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCC-------------------c---c
Confidence            3444433334434333 3 689999999975 689999999999999 88877542                   1   3


Q ss_pred             cHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccC
Q 024295          143 SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       143 ~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      ++.+.++      .+|+++.++|.+..+.  -+.+++| ..++.+|..
T Consensus       186 ~L~~~~~------~ADIVI~Avg~p~~I~--~~~vk~G-avVIDvgi~  224 (276)
T 3ngx_A          186 DIGSMTR------SSKIVVVAVGRPGFLN--REMVTPG-SVVIDVGIN  224 (276)
T ss_dssp             CHHHHHH------HSSEEEECSSCTTCBC--GGGCCTT-CEEEECCCE
T ss_pred             cHHHhhc------cCCEEEECCCCCcccc--HhhccCC-cEEEEeccC
Confidence            4444444      5799999998764332  2457886 888888754

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.46  E-value=0.012  Score=47.82  Aligned_cols=77  Identities=25%  Similarity=0.250  Sum_probs=57.1

Q ss_pred             CCCCeEEEEcCC-hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           83 EKGSSVAVLGLG-TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        83 ~~~~~vlI~G~g-~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      -.+++++|+|.| .+|.-++.++...|+ +|+...+.                   .   .++.+.++      .+|+|+
T Consensus       163 l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~-------------------t---~~L~~~~~------~ADIVI  213 (301)
T 1a4i_A          163 IAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSK-------------------T---AHLDEEVN------KGDILV  213 (301)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT-------------------C---SSHHHHHT------TCSEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEECC-------------------c---ccHHHHhc------cCCEEE
Confidence            378999999987 589999999999999 78877532                   1   34444443      689999


Q ss_pred             EccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          162 ECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      .++|.+..+.  -+.+++| ..++.+|...
T Consensus       214 ~Avg~p~~I~--~~~vk~G-avVIDVgi~~  240 (301)
T 1a4i_A          214 VATGQPEMVK--GEWIKPG-AIVIDCGINY  240 (301)
T ss_dssp             ECCCCTTCBC--GGGSCTT-CEEEECCCBC
T ss_pred             ECCCCcccCC--HHHcCCC-cEEEEccCCC
Confidence            9999874322  2447886 8999998653

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.46  E-value=0.017  Score=48.04  Aligned_cols=133  Identities=11%  Similarity=0.124  Sum_probs=79.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCC-C-eEEE-EcCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGA-A-KIIG-IDKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~-~-~v~~-~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      ++.|+|+|.+|...+..++.... . ++++ .++++++.+. ++++|...++       .++.+.+.    ...+|+|+-
T Consensus         4 rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~-------~~~~~ll~----~~~vD~V~i   72 (334)
T 3ohs_X            4 RWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAY-------GSYEELAK----DPNVEVAYV   72 (334)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEE-------SSHHHHHH----CTTCCEEEE
T ss_pred             EEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCccc-------CCHHHHhc----CCCCCEEEE
Confidence            58899999999876666665432 1 4554 4666666554 4557764444       33433333    238999999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      ++....+.+.+..++..  |+-|++..+.. ...-....+.    .++..+.-....  .....+..+.+++++|.+
T Consensus        73 ~tp~~~H~~~~~~al~~--GkhVl~EKP~a-~~~~e~~~l~~~a~~~~~~~~v~~~~--r~~p~~~~~k~~i~~g~i  144 (334)
T 3ohs_X           73 GTQHPQHKAAVMLCLAA--GKAVLCEKPMG-VNAAEVREMVTEARSRGLFLMEAIWT--RFFPASEALRSVLAQGTL  144 (334)
T ss_dssp             CCCGGGHHHHHHHHHHT--TCEEEEESSSS-SSHHHHHHHHHHHHHTTCCEEEECGG--GGSHHHHHHHHHHHHTTT
T ss_pred             CCCcHHHHHHHHHHHhc--CCEEEEECCCC-CCHHHHHHHHHHHHHhCCEEEEEEhH--hcCHHHHHHHHHHhcCCC
Confidence            99887788888888877  57777775542 1111111221    234433322211  122457788888988875

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.45  E-value=0.01  Score=45.22  Aligned_cols=96  Identities=16%  Similarity=0.169  Sum_probs=59.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+|||+|+ |.+|...++.+...|. +|+++++++++.+.....+...+. |..+   .   +.+.+...  ++|+++++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~~---~---~~~~~~~~--~~d~vi~~   74 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAHVVVGDVLQ---A---ADVDKTVA--GQDAVIVL   74 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSEEEESCTTS---H---HHHHHHHT--TCSEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChhhcccccCCceEEEEecCCC---H---HHHHHHHc--CCCEEEEC
Confidence            68999986 9999999998888898 999999987654322112222221 2221   2   22333332  68999999


Q ss_pred             cCChh----------HHHHHHHHccc-CCcEEEEEccC
Q 024295          164 TGVPS----------LLSEALETTKV-GKGKVIVIGVG  190 (269)
Q Consensus       164 ~g~~~----------~~~~~~~~l~~-~~G~~v~~g~~  190 (269)
                      ++...          ....+++.++. +.++++.++..
T Consensus        75 a~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~  112 (206)
T 1hdo_A           75 LGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA  112 (206)
T ss_dssp             CCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             ccCCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence            87532          13344444433 22588887654

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=96.45  E-value=0.0076  Score=49.00  Aligned_cols=97  Identities=13%  Similarity=0.113  Sum_probs=65.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCC------c---eeeCCCCCCCccHHHHHHhh
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGM------T---DFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~------~---~v~~~~~~~~~~~~~~i~~~  151 (269)
                      ..++++||++|+|. |..+..+++..+..+|++++.+++..+.+++ +..      +   .++.      .+..+.+...
T Consensus        76 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~------~D~~~~l~~~  148 (283)
T 2i7c_A           76 SKEPKNVLVVGGGD-GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI------EDASKFLENV  148 (283)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE------SCHHHHHHHC
T ss_pred             CCCCCeEEEEeCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEE------CChHHHHHhC
Confidence            44678999999875 7777788877655599999999988888876 221      0   1221      3344434332


Q ss_pred             hCCCCccEEEE-ccC---C------hhHHHHHHHHcccCCcEEEEEc
Q 024295          152 THGMGVDYCFE-CTG---V------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       152 ~~~~~~d~v~d-~~g---~------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                       + ..||+|+- ...   .      ...++.+.+.|+++ |.++...
T Consensus       149 -~-~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg-G~lv~~~  192 (283)
T 2i7c_A          149 -T-NTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPN-GYCVAQC  192 (283)
T ss_dssp             -C-SCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             -C-CCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEEC
Confidence             3 37999874 321   1      24578888999996 9998764

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.45  E-value=0.0078  Score=48.74  Aligned_cols=80  Identities=20%  Similarity=0.319  Sum_probs=51.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCC---ce-e--eCCCCCCCccHHHHHHhhh
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGM---TD-F--INPDDEPNKSISELVKGIT  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~---~~-v--~~~~~~~~~~~~~~i~~~~  152 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.+    ++.+.   .. .  .|-.+  .++..+.+.+..
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   86 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITN--EDETARAVDAVT   86 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCC--HHHHHHHHHHHH
Confidence            4789999986 8999999998888999 999999988765543    22332   11 1  23222  122222232221


Q ss_pred             C-CCCccEEEEccCC
Q 024295          153 H-GMGVDYCFECTGV  166 (269)
Q Consensus       153 ~-~~~~d~v~d~~g~  166 (269)
                      . -.++|++++++|.
T Consensus        87 ~~~g~id~lv~nAg~  101 (281)
T 3svt_A           87 AWHGRLHGVVHCAGG  101 (281)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCc
Confidence            1 0279999999874

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=96.45  E-value=0.027  Score=47.49  Aligned_cols=131  Identities=17%  Similarity=0.102  Sum_probs=77.2

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHc-CCCeEEEE-cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           86 SSVAVLGLGTVGLG-AVDGARMH-GAAKIIGI-DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        86 ~~vlI~G~g~~G~~-a~~la~~~-g~~~v~~~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      -+|.|+|+|.+|.. .....+.. ++ +++++ ++++++.+  ++++...++       .++.+.+    ....+|+|+.
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~~~--~~~~~~~~~-------~~~~~ll----~~~~~D~V~i   73 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGL-NLAFVASRDEEKVK--RDLPDVTVI-------ASPEAAV----QHPDVDLVVI   73 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTE-EEEEEECSCHHHHH--HHCTTSEEE-------SCHHHHH----TCTTCSEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCe-EEEEEEcCCHHHHH--hhCCCCcEE-------CCHHHHh----cCCCCCEEEE
Confidence            36899999999985 56655554 66 66655 55555433  445433343       3333333    2348999999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      |+....+.+.+..++..  |+-|++..+.. ...-....+.    .++..+.-...  +.....+..+.+++.+|.+
T Consensus        74 ~tp~~~H~~~~~~al~a--Gk~Vl~EKPla-~~~~e~~~l~~~a~~~g~~~~v~~~--~r~~p~~~~~~~~i~~g~i  145 (364)
T 3e82_A           74 ASPNATHAPLARLALNA--GKHVVVDKPFT-LDMQEARELIALAEEKQRLLSVFHN--RRWDSDYLGIRQVIEQGTL  145 (364)
T ss_dssp             CSCGGGHHHHHHHHHHT--TCEEEECSCSC-SSHHHHHHHHHHHHHTTCCEEECCC--CTTCHHHHHHHHHHHHTTT
T ss_pred             eCChHHHHHHHHHHHHC--CCcEEEeCCCc-CCHHHHHHHHHHHHHhCCeEEEEee--cccCHHHHHHHHHHHcCCC
Confidence            99887788888888877  67777765542 1111111221    23444432221  1122457888889988875

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.45  E-value=0.0093  Score=47.61  Aligned_cols=79  Identities=18%  Similarity=0.247  Sum_probs=50.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce---eeCCCCCCCccHHHHHHhhh--C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD---FINPDDEPNKSISELVKGIT--H  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~--~  153 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+    ++.+...   ..|-.+  .++..+.+.+..  -
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGK--AEDRERLVAMAVNLH   89 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4788999986 8999999998888999 999999987765543    2234321   123222  122222222221  1


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      + ++|++++++|.
T Consensus        90 g-~iD~lv~~Ag~  101 (260)
T 2zat_A           90 G-GVDILVSNAAV  101 (260)
T ss_dssp             S-CCCEEEECCCC
T ss_pred             C-CCCEEEECCCC
Confidence            2 79999999873

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=96.45  E-value=0.0062  Score=48.31  Aligned_cols=100  Identities=21%  Similarity=0.256  Sum_probs=64.0

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----C--------CCc--eeeCCCCCCCccHHH
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----F--------GMT--DFINPDDEPNKSISE  146 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~--------g~~--~v~~~~~~~~~~~~~  146 (269)
                      .++++.+||-+|+|. |..++.+++.....+|++++.+++..+.+++    .        +..  .++..+-   .+   
T Consensus        46 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~---~~---  118 (246)
T 2vdv_E           46 QMTKKVTIADIGCGF-GGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNA---MK---  118 (246)
T ss_dssp             CBSCCEEEEEETCTT-SHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCT---TS---
T ss_pred             cCCCCCEEEEEcCCC-CHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccH---HH---
Confidence            456788899999986 8888888887633389999999877766643    1        322  2222221   11   


Q ss_pred             HHHhhhCCCCccEEEEccCCh--------------hHHHHHHHHcccCCcEEEEEc
Q 024295          147 LVKGITHGMGVDYCFECTGVP--------------SLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       147 ~i~~~~~~~~~d~v~d~~g~~--------------~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .+....+...+|.|+-....+              ..+..+.+.|++| |.++...
T Consensus       119 ~l~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkpg-G~l~~~t  173 (246)
T 2vdv_E          119 FLPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEG-GVVYTIT  173 (246)
T ss_dssp             CGGGTSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             HHHHhccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCC-CEEEEEe
Confidence            122222233678776443332              4788899999996 9988753

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=96.45  E-value=0.022  Score=42.68  Aligned_cols=101  Identities=17%  Similarity=0.141  Sum_probs=67.1

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCc----eeeCCCCCCCccHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMT----DFINPDDEPNKSISEL  147 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~----~v~~~~~~~~~~~~~~  147 (269)
                      +......+++.+||-+|+|. |..+..+++. +. ++++++.+++..+.+++.    +..    .++..+      +.+ 
T Consensus        44 l~~~~~~~~~~~vLdiG~G~-G~~~~~~~~~-~~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d------~~~-  113 (194)
T 1dus_A           44 LVENVVVDKDDDILDLGCGY-GVIGIALADE-VK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD------LYE-  113 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECS------TTT-
T ss_pred             HHHHcccCCCCeEEEeCCCC-CHHHHHHHHc-CC-eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECc------hhc-
Confidence            44556777899999999875 7777788777 66 999999998887777652    322    222221      111 


Q ss_pred             HHhhhCCCCccEEEEccCC-------hhHHHHHHHHcccCCcEEEEEccC
Q 024295          148 VKGITHGMGVDYCFECTGV-------PSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       148 i~~~~~~~~~d~v~d~~g~-------~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                         ......+|+|+-....       ...+..+.+.++++ |.++.....
T Consensus       114 ---~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~~  159 (194)
T 1dus_A          114 ---NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN-GEIWVVIQT  159 (194)
T ss_dssp             ---TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE-EEEEEEEES
T ss_pred             ---ccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCC-CEEEEEECC
Confidence               1112379999854321       23567788899996 998887544

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=96.45  E-value=0.0075  Score=46.33  Aligned_cols=96  Identities=18%  Similarity=0.169  Sum_probs=63.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC----ceeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM----TDFINPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~----~~v~~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      +.++.+||.+|+|. |..+..+++. |..++++++.+++..+.+++...    ..++..+-   .++     .. ....+
T Consensus        40 ~~~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~---~~~-----~~-~~~~f  108 (215)
T 2pxx_A           40 LRPEDRILVLGCGN-SALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDV---RKL-----DF-PSASF  108 (215)
T ss_dssp             CCTTCCEEEETCTT-CSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCT---TSC-----CS-CSSCE
T ss_pred             cCCCCeEEEECCCC-cHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcch---hcC-----CC-CCCcc
Confidence            47889999999986 8777777776 44489999999988888876321    11221111   111     11 22379


Q ss_pred             cEEEEccC---------------------ChhHHHHHHHHcccCCcEEEEEcc
Q 024295          158 DYCFECTG---------------------VPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       158 d~v~d~~g---------------------~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      |+|+....                     ....+..+.+.++++ |+++....
T Consensus       109 D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~  160 (215)
T 2pxx_A          109 DVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPG-GRFISMTS  160 (215)
T ss_dssp             EEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEE-EEEEEEES
T ss_pred             cEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCC-CEEEEEeC
Confidence            99985311                     133577888999996 99988754

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=96.44  E-value=0.01  Score=46.90  Aligned_cols=78  Identities=13%  Similarity=0.113  Sum_probs=49.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C----CCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F----GMT-DF--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~----g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      ++++||+|+ |.+|.+.+..+...|+ +|+++++++++.+.+.+ +    +.. .+  .|-.+  ++.+.+.+.+... -
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   78 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEETARTHWHAYADKVLRVRADVAD--EGDVNAAIAATMEQF   78 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHh
Confidence            578999986 9999999998888999 99999998876654422 2    221 11  23222  1223232322211 0


Q ss_pred             CCccEEEEccC
Q 024295          155 MGVDYCFECTG  165 (269)
Q Consensus       155 ~~~d~v~d~~g  165 (269)
                      .++|++++++|
T Consensus        79 ~~id~li~~Ag   89 (250)
T 2cfc_A           79 GAIDVLVNNAG   89 (250)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            27999999886

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.44  E-value=0.024  Score=47.38  Aligned_cols=89  Identities=20%  Similarity=0.311  Sum_probs=61.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .|++|.|+|.|.+|...++.++..|. +|++.++++.+.+...  |...+        .++.+.+.      ..|+|+-+
T Consensus       172 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~--g~~~~--------~~l~ell~------~sDvV~l~  234 (345)
T 4g2n_A          172 TGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLSHALEE--GAIYH--------DTLDSLLG------ASDIFLIA  234 (345)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHT--TCEEC--------SSHHHHHH------TCSEEEEC
T ss_pred             CCCEEEEEEeChhHHHHHHHHHHCCC-EEEEECCCCcchhhhc--CCeEe--------CCHHHHHh------hCCEEEEe
Confidence            46899999999999999999999999 9999998765544332  43221        22333332      56888887


Q ss_pred             cCC-hhH----HHHHHHHcccCCcEEEEEccC
Q 024295          164 TGV-PSL----LSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       164 ~g~-~~~----~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      +.. +.+    -...+..++++ ..++.++..
T Consensus       235 ~Plt~~T~~li~~~~l~~mk~g-ailIN~aRG  265 (345)
T 4g2n_A          235 APGRPELKGFLDHDRIAKIPEG-AVVINISRG  265 (345)
T ss_dssp             SCCCGGGTTCBCHHHHHHSCTT-EEEEECSCG
T ss_pred             cCCCHHHHHHhCHHHHhhCCCC-cEEEECCCC
Confidence            753 211    24667788885 788877643

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=96.44  E-value=0.011  Score=48.30  Aligned_cols=34  Identities=26%  Similarity=0.272  Sum_probs=30.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      .++++||+|+ +++|.+.++.+...|+ +|++++++
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~   61 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVC   61 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            5789999986 8999999998889999 99999876

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.43  E-value=0.006  Score=49.39  Aligned_cols=78  Identities=13%  Similarity=0.208  Sum_probs=50.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC---c-ee--eCCCCCCCccHHHHHHhhh
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM---T-DF--INPDDEPNKSISELVKGIT  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~---~-~v--~~~~~~~~~~~~~~i~~~~  152 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+    .+.   . ..  .|-.+  .+...+.+.+..
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   81 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT--EDGQDQIINSTL   81 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCC--HHHHHHHHHHHH
Confidence            4678999986 8999999998888999 99999998876654422    232   1 11  23332  122222222221


Q ss_pred             --CCCCccEEEEccC
Q 024295          153 --HGMGVDYCFECTG  165 (269)
Q Consensus       153 --~~~~~d~v~d~~g  165 (269)
                        -+ ++|++++++|
T Consensus        82 ~~~g-~iD~lv~nAg   95 (280)
T 1xkq_A           82 KQFG-KIDVLVNNAG   95 (280)
T ss_dssp             HHHS-CCCEEEECCC
T ss_pred             HhcC-CCCEEEECCC
Confidence              12 7999999886

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.43  E-value=0.012  Score=47.44  Aligned_cols=96  Identities=18%  Similarity=0.160  Sum_probs=61.1

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHc--CCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           87 SVAVLGL-GTVGLGAVDGARMH--GAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~--g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      +|||+|+ |.+|...++.+...  |. +|+++++++++.+.+...+...+. |..+   .   +.+.+...  ++|+||+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~D~~d---~---~~l~~~~~--~~d~vi~   72 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNVEKASTLADQGVEVRHGDYNQ---P---ESLQKAFA--GVSKLLF   72 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTTHHHHHTTCEEEECCTTC---H---HHHHHHTT--TCSEEEE
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCHHHHhHHhhcCCeEEEeccCC---H---HHHHHHHh--cCCEEEE
Confidence            6899986 99999998888777  88 999999988776655554544332 3222   2   22333332  6899999


Q ss_pred             ccCCh-------hHHHHHHHHcccC-CcEEEEEccCC
Q 024295          163 CTGVP-------SLLSEALETTKVG-KGKVIVIGVGV  191 (269)
Q Consensus       163 ~~g~~-------~~~~~~~~~l~~~-~G~~v~~g~~~  191 (269)
                      +++..       .....+++.++.. -++++.++...
T Consensus        73 ~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~  109 (287)
T 2jl1_A           73 ISGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYAF  109 (287)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred             cCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            88741       1223444544432 14788877543

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=96.43  E-value=0.0099  Score=47.98  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=30.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|++++++
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   46 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLC   46 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecc
Confidence            5789999986 8999999998888999 99999876

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=96.42  E-value=0.026  Score=45.47  Aligned_cols=96  Identities=19%  Similarity=0.216  Sum_probs=65.3

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC--CceeeCCCCCCCccHHHHHHhhhCCC
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG--MTDFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g--~~~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      ......++.+||-+|+|. |..+..+++ .+. +|++++.+++..+.+++..  ...+....    .++.     . + .
T Consensus        51 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~d~----~~~~-----~-~-~  116 (279)
T 3ccf_A           51 QLLNPQPGEFILDLGCGT-GQLTEKIAQ-SGA-EVLGTDNAATMIEKARQNYPHLHFDVADA----RNFR-----V-D-K  116 (279)
T ss_dssp             HHHCCCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHCTTSCEEECCT----TTCC-----C-S-S
T ss_pred             HHhCCCCCCEEEEecCCC-CHHHHHHHh-CCC-eEEEEECCHHHHHHHHhhCCCCEEEECCh----hhCC-----c-C-C
Confidence            444667889999999986 888888887 676 9999999998888887642  22222111    1110     1 2 3


Q ss_pred             CccEEEEccC------ChhHHHHHHHHcccCCcEEEEEc
Q 024295          156 GVDYCFECTG------VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       156 ~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .||+|+-...      ....+..+.+.+++| |+++..-
T Consensus       117 ~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~~~~  154 (279)
T 3ccf_A          117 PLDAVFSNAMLHWVKEPEAAIASIHQALKSG-GRFVAEF  154 (279)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CcCEEEEcchhhhCcCHHHHHHHHHHhcCCC-cEEEEEe
Confidence            7999985432      123578889999996 9987653

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=96.42  E-value=0.068  Score=41.20  Aligned_cols=96  Identities=15%  Similarity=0.088  Sum_probs=64.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      ++..||-+|+|. |..++.+++.....++++++.+++..+.+++    .+..  .++..+-   .+    +........+
T Consensus        38 ~~~~vLDiGcG~-G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~---~~----l~~~~~~~~~  109 (213)
T 2fca_A           38 DNPIHIEVGTGK-GQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA---DT----LTDVFEPGEV  109 (213)
T ss_dssp             CCCEEEEECCTT-SHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCG---GG----HHHHCCTTSC
T ss_pred             CCceEEEEecCC-CHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCH---HH----HHhhcCcCCc
Confidence            577899999986 8888899988743399999999988777654    3432  2333221   22    2222223378


Q ss_pred             cEEEEccCC--------------hhHHHHHHHHcccCCcEEEEEc
Q 024295          158 DYCFECTGV--------------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       158 d~v~d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      |.|+-....              +..+..+.+.|++| |.++...
T Consensus       110 d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~Lkpg-G~l~~~t  153 (213)
T 2fca_A          110 KRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG-GSIHFKT  153 (213)
T ss_dssp             CEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS-CEEEEEE
T ss_pred             CEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCC-CEEEEEe
Confidence            988643321              34578889999996 9988764

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.42  E-value=0.017  Score=48.30  Aligned_cols=91  Identities=10%  Similarity=0.139  Sum_probs=62.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      .+|.|+|.|.+|.+.+..++..|. +|++.++++++.+.++++|... .       .+..+.+.+..  .+.|+||-++.
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~~~~a~~~G~~~-~-------~~~~e~~~~a~--~~aDlVilavP   77 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANH-SVFGYNRSRSGAKSAVDEGFDV-S-------ADLEATLQRAA--AEDALIVLAVP   77 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHTTCCE-E-------SCHHHHHHHHH--HTTCEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCee-e-------CCHHHHHHhcc--cCCCEEEEeCC
Confidence            579999999999999999998898 9999999999999998888742 2       22333333211  15799999987


Q ss_pred             ChhHHHHHHHH---cccCCcEEEEEcc
Q 024295          166 VPSLLSEALET---TKVGKGKVIVIGV  189 (269)
Q Consensus       166 ~~~~~~~~~~~---l~~~~G~~v~~g~  189 (269)
                      .. .+...++.   ++++ ..++.++.
T Consensus        78 ~~-~~~~vl~~l~~~~~~-~iv~Dv~S  102 (341)
T 3ktd_A           78 MT-AIDSLLDAVHTHAPN-NGFTDVVS  102 (341)
T ss_dssp             HH-HHHHHHHHHHHHCTT-CCEEECCS
T ss_pred             HH-HHHHHHHHHHccCCC-CEEEEcCC
Confidence            43 33333332   3453 45555553

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=96.42  E-value=0.0048  Score=50.75  Aligned_cols=97  Identities=13%  Similarity=0.087  Sum_probs=64.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-C--------C-ceeeCCCCCCCccHHHHHHhh
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-G--------M-TDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g--------~-~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      ..+.++||++|+|. |..+..+++..+..+|++++.+++..+.+++. .        . -.++.      .+..+.+.. 
T Consensus        93 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~------~Da~~~l~~-  164 (304)
T 2o07_A           93 HPNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV------GDGFEFMKQ-  164 (304)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHHHT-
T ss_pred             CCCCCEEEEECCCc-hHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE------CcHHHHHhh-
Confidence            45678999999875 77888888876555999999999888877662 1        1 11221      333333332 


Q ss_pred             hCCCCccEEE-EccCC---------hhHHHHHHHHcccCCcEEEEEc
Q 024295          152 THGMGVDYCF-ECTGV---------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       152 ~~~~~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .+ ..||+|+ |....         ...++.+.+.|+++ |.++...
T Consensus       165 ~~-~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~  209 (304)
T 2o07_A          165 NQ-DAFDVIITDSSDPMGPAESLFKESYYQLMKTALKED-GVLCCQG  209 (304)
T ss_dssp             CS-SCEEEEEEECC-----------CHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CC-CCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCC-eEEEEec
Confidence            23 3799987 44321         23578889999996 9988754

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.42  E-value=0.014  Score=48.87  Aligned_cols=90  Identities=19%  Similarity=0.339  Sum_probs=60.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+.+|.|+|.|.+|...++.++..|. +|++.+++.++. ..+++|+..+        .++.+.+.      ..|+|+-+
T Consensus       167 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~~~--------~~l~ell~------~aDvV~l~  230 (347)
T 1mx3_A          167 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG-VERALGLQRV--------STLQDLLF------HSDCVTLH  230 (347)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCTT-HHHHHTCEEC--------SSHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcchh-hHhhcCCeec--------CCHHHHHh------cCCEEEEc
Confidence            57899999999999999999999999 999999876542 2345565321        12322222      46788777


Q ss_pred             cCChh----HH-HHHHHHcccCCcEEEEEccC
Q 024295          164 TGVPS----LL-SEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       164 ~g~~~----~~-~~~~~~l~~~~G~~v~~g~~  190 (269)
                      +...+    .+ ...+..++++ ..++.++..
T Consensus       231 ~P~t~~t~~li~~~~l~~mk~g-ailIN~arg  261 (347)
T 1mx3_A          231 CGLNEHNHHLINDFTVKQMRQG-AFLVNTARG  261 (347)
T ss_dssp             CCCCTTCTTSBSHHHHTTSCTT-EEEEECSCT
T ss_pred             CCCCHHHHHHhHHHHHhcCCCC-CEEEECCCC
Confidence            64321    12 4556677775 777777644

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.42  E-value=0.01  Score=47.70  Aligned_cols=80  Identities=20%  Similarity=0.226  Sum_probs=50.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCC---cee--eCCCCCCCccHHHHHHhhhC-CC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGM---TDF--INPDDEPNKSISELVKGITH-GM  155 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~---~~v--~~~~~~~~~~~~~~i~~~~~-~~  155 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+ ++++.   ..+  .|-.+  .+.+.+.+.+... -.
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   91 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK--DEDVRNLVDTTIAKHG   91 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCCCceEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence            4688999986 8999999998888899 999999887665443 33321   112  23222  1223222322211 12


Q ss_pred             CccEEEEccCC
Q 024295          156 GVDYCFECTGV  166 (269)
Q Consensus       156 ~~d~v~d~~g~  166 (269)
                      ++|++++++|.
T Consensus        92 ~id~li~~Ag~  102 (278)
T 2bgk_A           92 KLDIMFGNVGV  102 (278)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            79999998873

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=96.41  E-value=0.0089  Score=47.41  Aligned_cols=80  Identities=16%  Similarity=0.099  Sum_probs=50.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc-ee--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT-DF--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+    +..+.. ..  .|-.+  ++.+.+.+.+... .
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   86 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS--EQELSALADFAISKL   86 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHHHHhc
Confidence            4688999986 9999999998888899 999999987665443    223432 12  23222  1223222322211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus        87 ~~~d~vi~~Ag~   98 (255)
T 1fmc_A           87 GKVDILVNNAGG   98 (255)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999998873

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.41  E-value=0.025  Score=48.38  Aligned_cols=95  Identities=13%  Similarity=0.081  Sum_probs=60.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCC--CeEEEEcCCcchHHHHHh-CC------Cce-eeCCCCCCCccHHHHHHhhhCCC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGA--AKIIGIDKNPWKKEKGKA-FG------MTD-FINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~--~~v~~~~~~~~~~~~~~~-~g------~~~-v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      .+|+|+|+|.+|..+++.+...|.  ..|++.+++.++.+.+.+ ++      ... .+|..+  .+++.+.+.+.    
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d--~~~l~~~l~~~----   75 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADS--IEELVALINEV----   75 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTC--HHHHHHHHHHH----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCC--HHHHHHHHHhh----
Confidence            378999999999999988887773  489999999887766433 32      221 223222  12333333332    


Q ss_pred             CccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295          156 GVDYCFECTGVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       156 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      ++|+|+++++.......+..++..+ -+++.+
T Consensus        76 ~~DvVin~ag~~~~~~v~~a~l~~g-~~vvD~  106 (405)
T 4ina_A           76 KPQIVLNIALPYQDLTIMEACLRTG-VPYLDT  106 (405)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHHHT-CCEEES
T ss_pred             CCCEEEECCCcccChHHHHHHHHhC-CCEEEe
Confidence            5899999998654444455566664 566654

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.41  E-value=0.017  Score=46.85  Aligned_cols=80  Identities=16%  Similarity=0.152  Sum_probs=49.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcC-CcchHHHHH----hC-CCc-eee--CCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDK-NPWKKEKGK----AF-GMT-DFI--NPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~-~~~~~~~~~----~~-g~~-~v~--~~~~~~~~~~~~~i~~~~~  153 (269)
                      .++++||+|+ |++|.+.+..+...|+ +|+.+++ ++++.+.+.    +. +.. ..+  |-.+  .++..+.+.+...
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~  100 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTK--PSEIADMMAMVAD  100 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCC--HHHHHHHHHHHHH
Confidence            4688999986 8999999999889999 9999998 444444332    22 222 122  2222  1223222322211


Q ss_pred             -CCCccEEEEccCC
Q 024295          154 -GMGVDYCFECTGV  166 (269)
Q Consensus       154 -~~~~d~v~d~~g~  166 (269)
                       -.++|++++++|.
T Consensus       101 ~~g~iD~lv~nAg~  114 (281)
T 3v2h_A          101 RFGGADILVNNAGV  114 (281)
T ss_dssp             HTSSCSEEEECCCC
T ss_pred             HCCCCCEEEECCCC
Confidence             1279999999874

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=96.41  E-value=0.023  Score=45.84  Aligned_cols=103  Identities=13%  Similarity=0.197  Sum_probs=66.0

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHHh
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVKG  150 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~  150 (269)
                      .....+++++||-+|+|+ |..+..+++.. +..+|++++.++++.+.+++    .|..  .++.      .+..+....
T Consensus        77 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~------~D~~~~~~~  149 (274)
T 3ajd_A           77 IVLNPREDDFILDMCAAP-GGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIIN------ADMRKYKDY  149 (274)
T ss_dssp             HHHCCCTTCEEEETTCTT-CHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE------SCHHHHHHH
T ss_pred             HHhCCCCcCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEe------CChHhcchh
Confidence            345678899999999876 77777788765 43499999999988887654    4542  2222      222222111


Q ss_pred             hh-CCCCccEEE-E--ccCC---------------------hhHHHHHHHHcccCCcEEEEEc
Q 024295          151 IT-HGMGVDYCF-E--CTGV---------------------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       151 ~~-~~~~~d~v~-d--~~g~---------------------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +. ....||+|+ |  |.+.                     ...+..+++.+++| |+++...
T Consensus       150 ~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~st  211 (274)
T 3ajd_A          150 LLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKD-GELVYST  211 (274)
T ss_dssp             HHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             hhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEEE
Confidence            10 123799886 4  3321                     23577888899996 9988754

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.41  E-value=0.012  Score=47.66  Aligned_cols=34  Identities=26%  Similarity=0.151  Sum_probs=30.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      +++++||+|+ |++|.+.++.+...|+ +|+.++++
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~   43 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDIC   43 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEccc
Confidence            5789999986 8999999999889999 99999876

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=96.41  E-value=0.0098  Score=47.09  Aligned_cols=80  Identities=21%  Similarity=0.226  Sum_probs=50.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcC-CcchHHHH----HhCCCce-e--eCCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDK-NPWKKEKG----KAFGMTD-F--INPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~-~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  153 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++ ++++.+.+    ++.+... .  .|-.+  ++++.+.+.+... 
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVAN--AEDVTNMVKQTVDV   79 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4678999986 8999999998888999 9999988 66655433    2234321 2  23322  1223332322211 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      -.++|++++++|.
T Consensus        80 ~g~id~lv~nAg~   92 (246)
T 2uvd_A           80 FGQVDILVNNAGV   92 (246)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            0279999999873

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=96.40  E-value=0.029  Score=42.30  Aligned_cols=96  Identities=19%  Similarity=0.220  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHHhhhCCCC
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      .++.+||-+|+|. |..+..+++ .+..+|++++.+++..+.+++    .+.+  .++.      .+..+......+ ..
T Consensus        43 ~~~~~vLDlgcG~-G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~------~d~~~~~~~~~~-~~  113 (189)
T 3p9n_A           43 LTGLAVLDLYAGS-GALGLEALS-RGAASVLFVESDQRSAAVIARNIEALGLSGATLRR------GAVAAVVAAGTT-SP  113 (189)
T ss_dssp             CTTCEEEEETCTT-CHHHHHHHH-TTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEE------SCHHHHHHHCCS-SC
T ss_pred             CCCCEEEEeCCCc-CHHHHHHHH-CCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEE------ccHHHHHhhccC-CC
Confidence            4788999999865 666665555 466589999999988877765    2322  2222      344443333323 38


Q ss_pred             ccEEEEcc--CC-----hhHHHHHHH--HcccCCcEEEEEc
Q 024295          157 VDYCFECT--GV-----PSLLSEALE--TTKVGKGKVIVIG  188 (269)
Q Consensus       157 ~d~v~d~~--g~-----~~~~~~~~~--~l~~~~G~~v~~g  188 (269)
                      ||+|+-..  ..     ...+..+.+  .++++ |.++..-
T Consensus       114 fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pg-G~l~~~~  153 (189)
T 3p9n_A          114 VDLVLADPPYNVDSADVDAILAALGTNGWTREG-TVAVVER  153 (189)
T ss_dssp             CSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTT-CEEEEEE
T ss_pred             ccEEEECCCCCcchhhHHHHHHHHHhcCccCCC-eEEEEEe
Confidence            99998532  11     124556666  88996 9887754

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.40  E-value=0.0091  Score=48.26  Aligned_cols=79  Identities=10%  Similarity=0.100  Sum_probs=50.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-Hh----CCCc-ee--eCCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KA----FGMT-DF--INPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~----~g~~-~v--~~~~~~~~~~~~~~i~~~~~-  153 (269)
                      +++++||+|+ |++|.+.++.+...|+ +|+.++++.++.+.+ ++    .+.. ..  .|-.+  .++..+.+.+... 
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~  102 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRA--PPAVMAAVDQALKE  102 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5789999986 8999999999888999 999999987665443 22    2322 12  23332  1222222222211 


Q ss_pred             CCCccEEEEccC
Q 024295          154 GMGVDYCFECTG  165 (269)
Q Consensus       154 ~~~~d~v~d~~g  165 (269)
                      -.++|++++++|
T Consensus       103 ~g~id~lv~nAg  114 (277)
T 4fc7_A          103 FGRIDILINCAA  114 (277)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence            027999999987

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=96.40  E-value=0.0083  Score=49.71  Aligned_cols=99  Identities=13%  Similarity=0.102  Sum_probs=64.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CC------ceeeCCCCCCCccHHHHHHhhhCCC
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GM------TDFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~------~~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      .++.+||++|+|. |..+..+++..+..+|++++.+++..+.+++. ..      +.-+....   .+..+.+... + .
T Consensus       115 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~---~D~~~~l~~~-~-~  188 (321)
T 2pt6_A          115 KEPKNVLVVGGGD-GGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFI---EDASKFLENV-T-N  188 (321)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEE---SCHHHHHHHC-C-S
T ss_pred             CCCCEEEEEcCCc-cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE---ccHHHHHhhc-C-C
Confidence            3568999999876 77788888776555999999999888888763 21      00011111   3343333332 2 3


Q ss_pred             CccEEE-EccC---C------hhHHHHHHHHcccCCcEEEEEc
Q 024295          156 GVDYCF-ECTG---V------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       156 ~~d~v~-d~~g---~------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .||+|+ |...   .      ...++.+.+.|+++ |.++...
T Consensus       189 ~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~  230 (321)
T 2pt6_A          189 TYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPN-GYCVAQC  230 (321)
T ss_dssp             CEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence            799987 4321   0      34578888999996 9988753

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=96.40  E-value=0.012  Score=47.01  Aligned_cols=96  Identities=20%  Similarity=0.120  Sum_probs=65.1

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC---ceeeCCCCCCCccHHHHHHhhhC
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM---TDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~---~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .+.++.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++    .|.   ..++..+-   .++     . ..
T Consensus        43 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~-----~-~~  111 (267)
T 3kkz_A           43 NLTEKSLIADIGCGT-GGQTMVLAGHVTG-QVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM---DDL-----P-FR  111 (267)
T ss_dssp             CCCTTCEEEEETCTT-CHHHHHHHTTCSS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSC-----C-CC
T ss_pred             cCCCCCEEEEeCCCC-CHHHHHHHhccCC-EEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh---hhC-----C-CC
Confidence            477899999999986 8888888888444 99999999987777754    332   12221111   111     0 12


Q ss_pred             CCCccEEEEc-----cCChhHHHHHHHHcccCCcEEEEEc
Q 024295          154 GMGVDYCFEC-----TGVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       154 ~~~~d~v~d~-----~g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ...||+|+-.     .+....+..+.+.+++| |+++...
T Consensus       112 ~~~fD~i~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  150 (267)
T 3kkz_A          112 NEELDLIWSEGAIYNIGFERGLNEWRKYLKKG-GYLAVSE  150 (267)
T ss_dssp             TTCEEEEEESSCGGGTCHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred             CCCEEEEEEcCCceecCHHHHHHHHHHHcCCC-CEEEEEE
Confidence            2379999743     23344678888999996 9988765

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.39  E-value=0.0075  Score=48.61  Aligned_cols=41  Identities=7%  Similarity=0.084  Sum_probs=33.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcC-CcchHHHH
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDK-NPWKKEKG  125 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~-~~~~~~~~  125 (269)
                      +++++||+|+ |.+|.+.+..+...|+ +|+++++ ++++.+.+
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   52 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRL   52 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHH
Confidence            4678999986 8999999998888999 9999998 77665543

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.39  E-value=0.0077  Score=48.55  Aligned_cols=80  Identities=18%  Similarity=0.203  Sum_probs=51.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCC--c-eeeCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGM--T-DFINPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~--~-~v~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |++|.+.+..+...|+ +|+.+++++++.+.+.    +.+.  . ...|-.+  .....+.+.+... -
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~  103 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVND--ATAVDALVESTLKEF  103 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCC--HHHHHHHHHHHHHHc
Confidence            5788999986 8999999998888999 9999999887665442    2332  1 1223332  1222222222211 0


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus       104 g~iD~lvnnAg~  115 (270)
T 3ftp_A          104 GALNVLVNNAGI  115 (270)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999999873

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=96.38  E-value=0.0071  Score=49.67  Aligned_cols=98  Identities=13%  Similarity=0.069  Sum_probs=60.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCc---------eee-CCCCCCCccHHHHHH
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMT---------DFI-NPDDEPNKSISELVK  149 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~---------~v~-~~~~~~~~~~~~~i~  149 (269)
                      ++.+||-+|+|. |..+..+++..+. +|+++|.+++..+.+++.    +..         ... +-..   +.+...+.
T Consensus        48 ~~~~VLDlGCG~-G~~l~~~~~~~~~-~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~---d~~~~~l~  122 (302)
T 2vdw_A           48 NKRKVLAIDFGN-GADLEKYFYGEIA-LLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRS---DTFVSSVR  122 (302)
T ss_dssp             SCCEEEETTCTT-TTTHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTS---SSHHHHHH
T ss_pred             CCCeEEEEecCC-cHhHHHHHhcCCC-eEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhccc---chhhhhhh
Confidence            578999999875 5444445554455 999999999888887652    211         111 1111   22334444


Q ss_pred             hhhCCCCccEEEEccC---------ChhHHHHHHHHcccCCcEEEEE
Q 024295          150 GITHGMGVDYCFECTG---------VPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       150 ~~~~~~~~d~v~d~~g---------~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      +......||+|+-...         ....+..+.+.|+|| |.++..
T Consensus       123 ~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpG-G~~i~~  168 (302)
T 2vdw_A          123 EVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASG-GKVLIT  168 (302)
T ss_dssp             TTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             ccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCC-CEEEEE
Confidence            3223338999974221         134678899999996 998654

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.38  E-value=0.013  Score=47.81  Aligned_cols=41  Identities=15%  Similarity=0.173  Sum_probs=34.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG  125 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~  125 (269)
                      +++++||+|+ |.+|.+.+..+...|+ +|+++++++++.+.+
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   58 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSA   58 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4688999986 8999999998888999 999999987765543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=96.38  E-value=0.021  Score=44.90  Aligned_cols=96  Identities=11%  Similarity=0.041  Sum_probs=58.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCcee-eCCCCCCCccHHHHHHhhhCCCCcc-EEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF-INPDDEPNKSISELVKGITHGMGVD-YCF  161 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d-~v~  161 (269)
                      ++.+||-+|+|+ |..+..+++. |+.+|+++|.+++..+.+++...... ....+   -.+.. ..++ ....+| ..+
T Consensus        37 ~g~~VLDiGcGt-G~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~---~~~~~-~~~~-~~~~~d~~~~  109 (232)
T 3opn_A           37 NGKTCLDIGSST-GGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFN---FRNAV-LADF-EQGRPSFTSI  109 (232)
T ss_dssp             TTCEEEEETCTT-SHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCC---GGGCC-GGGC-CSCCCSEEEE
T ss_pred             CCCEEEEEccCC-CHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccce---EEEeC-HhHc-CcCCCCEEEE
Confidence            567999999986 7777777776 76699999999988777665432211 11111   00000 0011 110123 334


Q ss_pred             Ecc--CChhHHHHHHHHcccCCcEEEEE
Q 024295          162 ECT--GVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       162 d~~--g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      |.+  .....+..+.+.|++| |+++.+
T Consensus       110 D~v~~~l~~~l~~i~rvLkpg-G~lv~~  136 (232)
T 3opn_A          110 DVSFISLDLILPPLYEILEKN-GEVAAL  136 (232)
T ss_dssp             CCSSSCGGGTHHHHHHHSCTT-CEEEEE
T ss_pred             EEEhhhHHHHHHHHHHhccCC-CEEEEE
Confidence            433  2245789999999997 998876

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=96.37  E-value=0.03  Score=45.52  Aligned_cols=74  Identities=20%  Similarity=0.179  Sum_probs=53.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  166 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  166 (269)
                      +|.|+|+|.+|...+..+...|. +|++.++++++.+.+++.|... .       .+..+.+.      ..|+|+-++..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~-~-------~~~~~~~~------~~Dvvi~~vp~   66 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVFPDACKEFQDAGEQV-V-------SSPADVAE------KADRIITMLPT   66 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSSTHHHHHHHTTTCEE-C-------SSHHHHHH------HCSEEEECCSS
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCee-c-------CCHHHHHh------cCCEEEEeCCC
Confidence            58899999999998888888888 8999999998888887766431 1       22222232      46888888866


Q ss_pred             hhHHHHHHH
Q 024295          167 PSLLSEALE  175 (269)
Q Consensus       167 ~~~~~~~~~  175 (269)
                      +......+.
T Consensus        67 ~~~~~~v~~   75 (296)
T 2gf2_A           67 SINAIEAYS   75 (296)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            555555554

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.37  E-value=0.023  Score=45.80  Aligned_cols=85  Identities=21%  Similarity=0.318  Sum_probs=58.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc-eeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT-DFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      +|.|+|+|.+|.+.+..+...|. +|+++++++++.+.+++.|.. .+...       .    .+.   .+.|+|+-++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~~~-------~----~~~---~~~D~vi~av~   66 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQD-------L----SLL---QTAKIIFLCTP   66 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESC-------G----GGG---TTCSEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCCccccCC-------H----HHh---CCCCEEEEECC
Confidence            58899999999999888888898 899999999988888877753 22211       1    122   27899999997


Q ss_pred             ChhHHHHHHH----HcccCCcEEEEEc
Q 024295          166 VPSLLSEALE----TTKVGKGKVIVIG  188 (269)
Q Consensus       166 ~~~~~~~~~~----~l~~~~G~~v~~g  188 (269)
                      .. .....++    .++++ ..++.++
T Consensus        67 ~~-~~~~~~~~l~~~~~~~-~~vv~~~   91 (279)
T 2f1k_A           67 IQ-LILPTLEKLIPHLSPT-AIVTDVA   91 (279)
T ss_dssp             HH-HHHHHHHHHGGGSCTT-CEEEECC
T ss_pred             HH-HHHHHHHHHHhhCCCC-CEEEECC
Confidence            54 3344443    34453 5555553

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.37  E-value=0.028  Score=44.78  Aligned_cols=35  Identities=26%  Similarity=0.324  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      .+.+|+|+|+|++|..++..+...|..+++.+|.+
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35789999999999999999999999889888754

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.37  E-value=0.0087  Score=47.93  Aligned_cols=80  Identities=18%  Similarity=0.278  Sum_probs=51.0

Q ss_pred             CCCeEEEEcC-C-hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCC-Cc-ee--eCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-G-TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFG-MT-DF--INPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g-~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g-~~-~v--~~~~~~~~~~~~~~i~~~~~  153 (269)
                      +++++||+|+ | ++|.+.+..+...|+ +|+.+++++++.+.+.    +.+ .. .+  .|-.+  .+++.+.+.+...
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~   97 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTS--TEAVDALITQTVE   97 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCC--HHHHHHHHHHHHH
Confidence            5789999987 6 799999988888899 9999999887665542    222 11 12  23322  1222222222211


Q ss_pred             -CCCccEEEEccCC
Q 024295          154 -GMGVDYCFECTGV  166 (269)
Q Consensus       154 -~~~~d~v~d~~g~  166 (269)
                       ..++|++++++|.
T Consensus        98 ~~g~id~li~~Ag~  111 (266)
T 3o38_A           98 KAGRLDVLVNNAGL  111 (266)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HhCCCcEEEECCCc
Confidence             1279999999874

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=96.36  E-value=0.0059  Score=51.42  Aligned_cols=48  Identities=27%  Similarity=0.281  Sum_probs=40.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHhCCCc
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEK-GKAFGMT  131 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~-~~~~g~~  131 (269)
                      -++++|+|.|.|.+|..+++.+...|+ +|++.++++++.+. +++++++
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a~~~ga~  219 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD  219 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE
Confidence            478999999999999999999999999 89999998877664 4445654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=96.36  E-value=0.0056  Score=48.12  Aligned_cols=95  Identities=25%  Similarity=0.303  Sum_probs=64.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC---ceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM---TDFINPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      +.++.+||-+|+|. |..+..+++. |. +|++++.+++..+.+++...   -.++..+-   .++     . .....||
T Consensus        51 ~~~~~~vLDiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~---~~~-----~-~~~~~fD  118 (242)
T 3l8d_A           51 VKKEAEVLDVGCGD-GYGTYKLSRT-GY-KAVGVDISEVMIQKGKERGEGPDLSFIKGDL---SSL-----P-FENEQFE  118 (242)
T ss_dssp             SCTTCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHTTTCBTTEEEEECBT---TBC-----S-SCTTCEE
T ss_pred             cCCCCeEEEEcCCC-CHHHHHHHHc-CC-eEEEEECCHHHHHHHHhhcccCCceEEEcch---hcC-----C-CCCCCcc
Confidence            55889999999876 7777777776 77 99999999998888877531   11221111   111     0 1233899


Q ss_pred             EEEEccCC------hhHHHHHHHHcccCCcEEEEEcc
Q 024295          159 YCFECTGV------PSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       159 ~v~d~~g~------~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      +|+-...-      ...+..+.+.+++| |.++....
T Consensus       119 ~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~i~~~  154 (242)
T 3l8d_A          119 AIMAINSLEWTEEPLRALNEIKRVLKSD-GYACIAIL  154 (242)
T ss_dssp             EEEEESCTTSSSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             EEEEcChHhhccCHHHHHHHHHHHhCCC-eEEEEEEc
Confidence            99854321      23678899999996 98877653

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=96.36  E-value=0.025  Score=48.21  Aligned_cols=98  Identities=20%  Similarity=0.166  Sum_probs=65.2

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-eeeCCCCCCCccHHHHHHhhhCCCC
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DFINPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      ++++++||-+|+|+ |..++.+++. |+ +|+++|.+++..+.+++    .|.+ .+.   .   .+..+.+... .+ .
T Consensus       212 ~~~g~~VLDlg~Gt-G~~sl~~a~~-ga-~V~avDis~~al~~a~~n~~~ng~~~~~~---~---~D~~~~l~~~-~~-~  280 (393)
T 4dmg_A          212 VRPGERVLDVYSYV-GGFALRAARK-GA-YALAVDKDLEALGVLDQAALRLGLRVDIR---H---GEALPTLRGL-EG-P  280 (393)
T ss_dssp             CCTTCEEEEESCTT-THHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHHTCCCEEE---E---SCHHHHHHTC-CC-C
T ss_pred             hcCCCeEEEcccch-hHHHHHHHHc-CC-eEEEEECCHHHHHHHHHHHHHhCCCCcEE---E---ccHHHHHHHh-cC-C
Confidence            44699999998865 6666666664 88 59999999988888765    3433 233   2   4444444443 34 4


Q ss_pred             ccEEEEccCC---------------hhHHHHHHHHcccCCcEEEEEccCC
Q 024295          157 VDYCFECTGV---------------PSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       157 ~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      ||+|+-....               ...+..+++.+++| |.++.+....
T Consensus       281 fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpG-G~Lv~~s~s~  329 (393)
T 4dmg_A          281 FHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEE-GFLWLSSCSY  329 (393)
T ss_dssp             EEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEE-EEEEEEECCT
T ss_pred             CCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEECCC
Confidence            9988742221               23567788899996 9998765443

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=96.36  E-value=0.012  Score=47.00  Aligned_cols=79  Identities=16%  Similarity=0.182  Sum_probs=49.0

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcch--HHHH-Hh---CCCc-ee--eCCCCCCCccHHHHHHhhhC-
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWK--KEKG-KA---FGMT-DF--INPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~--~~~~-~~---~g~~-~v--~~~~~~~~~~~~~~i~~~~~-  153 (269)
                      ++++||+|+ |.+|.+.++.+...|+ +|+++++++++  .+.+ ++   .+.. ..  .|-.+  .+.+.+.+.+... 
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   78 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTD--KANFDSAIDEAAEK   78 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            578999986 8999999888888899 89999988766  4332 22   2322 11  23322  1222222222211 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      -.++|++++++|.
T Consensus        79 ~g~iD~lv~nAg~   91 (258)
T 3a28_C           79 LGGFDVLVNNAGI   91 (258)
T ss_dssp             HTCCCEEEECCCC
T ss_pred             hCCCCEEEECCCC
Confidence            0279999999873

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=96.35  E-value=0.0082  Score=47.97  Aligned_cols=102  Identities=18%  Similarity=0.163  Sum_probs=65.9

Q ss_pred             HhcCCC-CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccHHHHHH
Q 024295           78 KEAKVE-KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSISELVK  149 (269)
Q Consensus        78 ~~~~~~-~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~  149 (269)
                      ....++ ++.+||-+|+|+ |..+..+++.... +|++++.+++..+.+++    .+..   .++..+      +.+...
T Consensus        42 ~~~~~~~~~~~vLDlG~G~-G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D------~~~~~~  113 (259)
T 3lpm_A           42 KFSYLPIRKGKIIDLCSGN-GIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYD------LKKITD  113 (259)
T ss_dssp             HHCCCCSSCCEEEETTCTT-THHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSC------GGGGGG
T ss_pred             HHhcCCCCCCEEEEcCCch-hHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECc------HHHhhh
Confidence            345677 889999999876 7777777777555 99999999888777755    2322   233222      211111


Q ss_pred             hhhCCCCccEEEEccC--------C------------------hhHHHHHHHHcccCCcEEEEEcc
Q 024295          150 GITHGMGVDYCFECTG--------V------------------PSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       150 ~~~~~~~~d~v~d~~g--------~------------------~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      .+ ....||+|+-...        .                  ...+..+.+.|+++ |+++.+-.
T Consensus       114 ~~-~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  177 (259)
T 3lpm_A          114 LI-PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQG-GKANFVHR  177 (259)
T ss_dssp             TS-CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             hh-ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCC-cEEEEEEc
Confidence            11 1338999986311        0                  12567888899996 99988643

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.35  E-value=0.007  Score=49.54  Aligned_cols=78  Identities=19%  Similarity=0.271  Sum_probs=50.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCC---c-ee--eCCCCCCCccHHHHHHhhh
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGM---T-DF--INPDDEPNKSISELVKGIT  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~---~-~v--~~~~~~~~~~~~~~i~~~~  152 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    +.+.   . ..  .|-.+  ++.+.+.+.+..
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~  101 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE--ASGQDDIINTTL  101 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCC--HHHHHHHHHHHH
Confidence            4688999986 8999999998888999 9999999887665432    2232   1 11  23322  122222222221


Q ss_pred             --CCCCccEEEEccC
Q 024295          153 --HGMGVDYCFECTG  165 (269)
Q Consensus       153 --~~~~~d~v~d~~g  165 (269)
                        -+ ++|++++++|
T Consensus       102 ~~~g-~iD~lvnnAG  115 (297)
T 1xhl_A          102 AKFG-KIDILVNNAG  115 (297)
T ss_dssp             HHHS-CCCEEEECCC
T ss_pred             HhcC-CCCEEEECCC
Confidence              12 7999999887

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.35  E-value=0.013  Score=47.52  Aligned_cols=34  Identities=26%  Similarity=0.279  Sum_probs=30.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      .++++||+|+ +++|.+.++.+...|+ +|+.++++
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~   44 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDIC   44 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEecc
Confidence            5789999986 8999999999889999 99999876

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.35  E-value=0.023  Score=44.07  Aligned_cols=75  Identities=13%  Similarity=0.002  Sum_probs=53.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      +|+|+|+|.+|...++.+...|. .|+++++++++.+.+.+ .+...+.-..    .+ .+.+.+. +-.++|+++-+++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~~~~~i~gd~----~~-~~~l~~a-~i~~ad~vi~~~~   74 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKLKATIIHGDG----SH-KEILRDA-EVSKNDVVVILTP   74 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHSSSEEEESCT----TS-HHHHHHH-TCCTTCEEEECCS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHcCCeEEEcCC----CC-HHHHHhc-CcccCCEEEEecC
Confidence            58899999999999999998999 99999999998887654 5654333211    11 1223332 2237999999998


Q ss_pred             Chh
Q 024295          166 VPS  168 (269)
Q Consensus       166 ~~~  168 (269)
                      ...
T Consensus        75 ~d~   77 (218)
T 3l4b_C           75 RDE   77 (218)
T ss_dssp             CHH
T ss_pred             CcH
Confidence            764

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=96.35  E-value=0.009  Score=46.56  Aligned_cols=95  Identities=18%  Similarity=0.302  Sum_probs=63.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc-----------eeeCCCCCCCccHHHHHHh
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT-----------DFINPDDEPNKSISELVKG  150 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~-----------~v~~~~~~~~~~~~~~i~~  150 (269)
                      ++++.+||.+|+|. |..+..+++. +. +|++++.+++..+.+++....           .++..+-   ..+     .
T Consensus        28 ~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~---~~~-----~   96 (235)
T 3sm3_A           28 LQEDDEILDIGCGS-GKISLELASK-GY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA---SSL-----S   96 (235)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT---TSC-----C
T ss_pred             CCCCCeEEEECCCC-CHHHHHHHhC-CC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc---ccc-----C
Confidence            55889999999986 8888888777 77 999999999888888763211           1111111   110     0


Q ss_pred             hhCCCCccEEEEcc-----CCh----hHHHHHHHHcccCCcEEEEEcc
Q 024295          151 ITHGMGVDYCFECT-----GVP----SLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       151 ~~~~~~~d~v~d~~-----g~~----~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                       .....+|+|+-..     ..+    ..+..+.+.+++| |+++....
T Consensus        97 -~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  142 (235)
T 3sm3_A           97 -FHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPG-AYLYLVEF  142 (235)
T ss_dssp             -SCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             -CCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCC-eEEEEEEC
Confidence             1123799987432     122    4678889999996 99988754

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=96.34  E-value=0.019  Score=49.15  Aligned_cols=132  Identities=14%  Similarity=0.106  Sum_probs=81.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHc---------CCCeEEEE-cCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMH---------GAAKIIGI-DKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~---------g~~~v~~~-~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      =+|.|+|+|.+|..-+...+..         ++ +++++ ++++++.+. ++++|...++       .++.+.+.    .
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~-elvav~d~~~~~a~~~a~~~~~~~~y-------~d~~~ll~----~   94 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRP-HLYALADQDQAMAERHAAKLGAEKAY-------GDWRELVN----D   94 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEE-EEEEEECSSHHHHHHHHHHHTCSEEE-------SSHHHHHH----C
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCe-EEEEEEcCCHHHHHHHHHHcCCCeEE-------CCHHHHhc----C
Confidence            3689999999997644444432         34 55655 566666655 4668876665       34444443    2


Q ss_pred             CCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceE-EeeeccCCCCCCcHHHHHHH
Q 024295          155 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTL-KGTTFGGIKTKSDLPTLLDK  229 (269)
Q Consensus       155 ~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~l  229 (269)
                      ..+|+|+-|+....+.+.+..+++.  |+-|++..+... ..-....+.    .++..+ .+...   .....+..+.++
T Consensus        95 ~~vD~V~I~tp~~~H~~~~~~al~a--GkhVl~EKP~a~-~~~ea~~l~~~a~~~g~~~~v~~~~---R~~p~~~~~k~~  168 (412)
T 4gqa_A           95 PQVDVVDITSPNHLHYTMAMAAIAA--GKHVYCEKPLAV-NEQQAQEMAQAARRAGVKTMVAFNN---IKTPAALLAKQI  168 (412)
T ss_dssp             TTCCEEEECSCGGGHHHHHHHHHHT--TCEEEEESCSCS-SHHHHHHHHHHHHHHTCCEEEECGG---GTSHHHHHHHHH
T ss_pred             CCCCEEEECCCcHHHHHHHHHHHHc--CCCeEeecCCcC-CHHHHHHHHHHHHHhCCeeeeccce---ecCHHHHHHHHH
Confidence            3899999999888788888888887  677888765531 111111222    233333 23221   123457788889


Q ss_pred             HHCCCC
Q 024295          230 CKNKEF  235 (269)
Q Consensus       230 ~~~g~~  235 (269)
                      +.+|.+
T Consensus       169 i~~G~i  174 (412)
T 4gqa_A          169 IARGDI  174 (412)
T ss_dssp             HHHTTT
T ss_pred             HhcCCc
Confidence            998875

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=96.33  E-value=0.016  Score=47.75  Aligned_cols=92  Identities=11%  Similarity=0.050  Sum_probs=63.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHh-CCCc-----eeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           87 SVAVLGLGTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKA-FGMT-----DFINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~-~g~~-----~v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      +||++|+|. |..+..+++.+ +. +|++++.+++-.+.+++ ++..     .++.      .+..+.+.+..++ .||+
T Consensus        92 rVLdIG~G~-G~la~~la~~~p~~-~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~------~Da~~~l~~~~~~-~fDv  162 (317)
T 3gjy_A           92 RITHLGGGA-CTMARYFADVYPQS-RNTVVELDAELARLSREWFDIPRAPRVKIRV------DDARMVAESFTPA-SRDV  162 (317)
T ss_dssp             EEEEESCGG-GHHHHHHHHHSTTC-EEEEEESCHHHHHHHHHHSCCCCTTTEEEEE------SCHHHHHHTCCTT-CEEE
T ss_pred             EEEEEECCc-CHHHHHHHHHCCCc-EEEEEECCHHHHHHHHHhccccCCCceEEEE------CcHHHHHhhccCC-CCCE
Confidence            899999876 88888888865 56 99999999999988887 3311     1221      3444444443233 8998


Q ss_pred             EEE-ccCC---------hhHHHHHHHHcccCCcEEEEEc
Q 024295          160 CFE-CTGV---------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       160 v~d-~~g~---------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      |+- ....         ...++.+.+.|+++ |.++...
T Consensus       163 Ii~D~~~~~~~~~~L~t~efl~~~~r~Lkpg-Gvlv~~~  200 (317)
T 3gjy_A          163 IIRDVFAGAITPQNFTTVEFFEHCHRGLAPG-GLYVANC  200 (317)
T ss_dssp             EEECCSTTSCCCGGGSBHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             EEECCCCccccchhhhHHHHHHHHHHhcCCC-cEEEEEe
Confidence            874 2211         23578889999996 9887654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=96.33  E-value=0.0064  Score=49.22  Aligned_cols=95  Identities=14%  Similarity=0.030  Sum_probs=64.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C-----CC----ceeeCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F-----GM----TDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~-----g~----~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      ...+||++|+|. |..+..+++..+..+|++++.+++-.+.+++ +     +.    -.++.      .+..+.+.+ .+
T Consensus        75 ~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~------~D~~~~l~~-~~  146 (275)
T 1iy9_A           75 NPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQV------DDGFMHIAK-SE  146 (275)
T ss_dssp             SCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEE------SCSHHHHHT-CC
T ss_pred             CCCEEEEECCch-HHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEE------CcHHHHHhh-CC
Confidence            568999999875 7777788887676699999999988888776 2     11    12222      223333333 22


Q ss_pred             CCCccEEEEccCC----------hhHHHHHHHHcccCCcEEEEEc
Q 024295          154 GMGVDYCFECTGV----------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       154 ~~~~d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                       ..||+|+-....          ...++.+.+.|+++ |.++...
T Consensus       147 -~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pg-G~lv~~~  189 (275)
T 1iy9_A          147 -NQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-GIFVAQT  189 (275)
T ss_dssp             -SCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-EEEEEEC
T ss_pred             -CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence             379998743321          34688999999996 9988763

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.32  E-value=0.028  Score=48.82  Aligned_cols=92  Identities=15%  Similarity=0.052  Sum_probs=55.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCcee--eCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDF--INPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v--~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      +++|+|+|+|.+|.+.+..+...|. +|++.++++++.+.+.+ ++....  .+..+     . +.+.+...  ++|+|+
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d-----~-~~l~~~l~--~~DvVI   73 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVND-----D-AALDAEVA--KHDLVI   73 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHTTTTCTTEEEEECCTTC-----H-HHHHHHHT--TSSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHHHHhcCCceEEEeecCC-----H-HHHHHHHc--CCcEEE
Confidence            5689999999999999888888898 89999998877665433 332111  12221     1 12222222  799999


Q ss_pred             EccCChhHHHHHHHHcccCCcEEEE
Q 024295          162 ECTGVPSLLSEALETTKVGKGKVIV  186 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~~~G~~v~  186 (269)
                      ++++..........++..+ -+++.
T Consensus        74 n~a~~~~~~~i~~a~l~~g-~~vvd   97 (450)
T 1ff9_A           74 SLIPYTFHATVIKSAIRQK-KHVVT   97 (450)
T ss_dssp             ECCC--CHHHHHHHHHHHT-CEEEE
T ss_pred             ECCccccchHHHHHHHhCC-CeEEE
Confidence            9997532322233445553 44443

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=96.32  E-value=0.02  Score=45.06  Aligned_cols=100  Identities=18%  Similarity=0.189  Sum_probs=59.5

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHH----HHhCCCceeeCCCCCCCccHHHHHHhhhCC
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEK----GKAFGMTDFINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~----~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      ..++++++||-+|+|+ |..+..+++..|. .+|++++.++...+.    +++...-..+..+.   ... ...... .+
T Consensus        72 ~~l~~g~~VLDlG~Gt-G~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da---~~~-~~~~~~-~~  145 (232)
T 3id6_C           72 NPIRKGTKVLYLGAAS-GTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADA---RFP-QSYKSV-VE  145 (232)
T ss_dssp             CSCCTTCEEEEETCTT-SHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCT---TCG-GGTTTT-CC
T ss_pred             cCCCCCCEEEEEeecC-CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEccc---ccc-hhhhcc-cc
Confidence            4588999999999976 7788888887652 389999999876432    33332222221111   110 000011 22


Q ss_pred             CCccEEEEccCChhH---HH-HHHHHcccCCcEEEEE
Q 024295          155 MGVDYCFECTGVPSL---LS-EALETTKVGKGKVIVI  187 (269)
Q Consensus       155 ~~~d~v~d~~g~~~~---~~-~~~~~l~~~~G~~v~~  187 (269)
                       .||+||-.+..+..   +. .+.+.|++| |+++..
T Consensus       146 -~~D~I~~d~a~~~~~~il~~~~~~~LkpG-G~lvis  180 (232)
T 3id6_C          146 -NVDVLYVDIAQPDQTDIAIYNAKFFLKVN-GDMLLV  180 (232)
T ss_dssp             -CEEEEEECCCCTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             -ceEEEEecCCChhHHHHHHHHHHHhCCCC-eEEEEE
Confidence             79999755443322   22 233489996 999876

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=96.32  E-value=0.032  Score=45.99  Aligned_cols=100  Identities=20%  Similarity=0.244  Sum_probs=67.0

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHHh
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVKG  150 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~  150 (269)
                      ....++++++||-+|+|+ |..+.++++.++ ..+|++++.++++.+.+++    .|..  .++..+.   .++.    .
T Consensus       112 ~~l~~~~g~~VLDlg~G~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~---~~~~----~  183 (315)
T 1ixk_A          112 VALDPKPGEIVADMAAAP-GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSS---LHIG----E  183 (315)
T ss_dssp             HHHCCCTTCEEEECCSSC-SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG---GGGG----G
T ss_pred             HHhCCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECCh---hhcc----c
Confidence            345778999999999876 777888888763 2389999999988887755    3542  2333221   2211    1


Q ss_pred             hhCCCCccEEE-E--ccCC-------------------------hhHHHHHHHHcccCCcEEEEEc
Q 024295          151 ITHGMGVDYCF-E--CTGV-------------------------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       151 ~~~~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                       .++ .||+|+ |  |.|.                         ...+..+.+.+++| |+++...
T Consensus       184 -~~~-~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpG-G~lv~st  246 (315)
T 1ixk_A          184 -LNV-EFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG-GILVYST  246 (315)
T ss_dssp             -GCC-CEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             -ccc-cCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEEe
Confidence             123 799887 4  3221                         24567889999996 9998754

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.32  E-value=0.023  Score=46.22  Aligned_cols=41  Identities=12%  Similarity=0.079  Sum_probs=34.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEc-CCcchHHHH
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGID-KNPWKKEKG  125 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~-~~~~~~~~~  125 (269)
                      .++++||+|+ |++|.+.++.+...|+ +|+.++ +++++.+.+
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~   50 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   50 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHH
Confidence            4678999986 8999999999988999 999999 887765543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=96.31  E-value=0.0043  Score=47.83  Aligned_cols=98  Identities=17%  Similarity=0.150  Sum_probs=62.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      .++.+||.+|+|. |..+..+++... ..+|++++.+++..+.+++    .+...-+....   .+..+.+...  .. |
T Consensus        55 ~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~~~~~~--~~-f  127 (210)
T 3c3p_A           55 KQPQLVVVPGDGL-GCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQV---GDPLGIAAGQ--RD-I  127 (210)
T ss_dssp             HCCSEEEEESCGG-GHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEE---SCHHHHHTTC--CS-E
T ss_pred             hCCCEEEEEcCCc-cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEE---ecHHHHhccC--CC-C
Confidence            4678999999876 888888988763 2399999999988877764    23211111111   3333333222  22 9


Q ss_pred             cEEEEccC---ChhHHHHHHHHcccCCcEEEEEc
Q 024295          158 DYCFECTG---VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       158 d~v~d~~g---~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      |+|+-...   ....+..+.+.+++| |.++.-.
T Consensus       128 D~v~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~  160 (210)
T 3c3p_A          128 DILFMDCDVFNGADVLERMNRCLAKN-ALLIAVN  160 (210)
T ss_dssp             EEEEEETTTSCHHHHHHHHGGGEEEE-EEEEEES
T ss_pred             CEEEEcCChhhhHHHHHHHHHhcCCC-eEEEEEC
Confidence            98874322   234578888999996 9887643

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=96.31  E-value=0.027  Score=46.88  Aligned_cols=88  Identities=19%  Similarity=0.137  Sum_probs=61.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+++|.|+|.|.+|...++.++..|. +|++.++++++.  +++. +.    ..    .++.+.+.      ..|+|+.+
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~--~~~~-~~----~~----~~l~ell~------~aDvV~l~  206 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPE--LEKK-GY----YV----DSLDDLYK------QADVISLH  206 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHH--HHHT-TC----BC----SCHHHHHH------HCSEEEEC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcchh--HHhh-Ce----ec----CCHHHHHh------hCCEEEEc
Confidence            46899999999999999999999999 999999887654  2332 22    11    12333332      57899988


Q ss_pred             cCChhH----H-HHHHHHcccCCcEEEEEccC
Q 024295          164 TGVPSL----L-SEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       164 ~g~~~~----~-~~~~~~l~~~~G~~v~~g~~  190 (269)
                      +...+.    + ...+..++++ +.++.++..
T Consensus       207 ~p~~~~t~~li~~~~l~~mk~g-a~lIn~arg  237 (333)
T 1j4a_A          207 VPDVPANVHMINDESIAKMKQD-VVIVNVSRG  237 (333)
T ss_dssp             SCCCGGGTTCBSHHHHHHSCTT-EEEEECSCG
T ss_pred             CCCcHHHHHHHhHHHHhhCCCC-cEEEECCCC
Confidence            864321    1 3567888886 888888753

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=96.31  E-value=0.0072  Score=47.93  Aligned_cols=99  Identities=19%  Similarity=0.179  Sum_probs=66.2

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC---ceeeCCCCCCCccHHHHHHhh-
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM---TDFINPDDEPNKSISELVKGI-  151 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~i~~~-  151 (269)
                      +.......++.+||-+|+|. |..+..+++. |..+|++++.+++..+.+++...   ..++..      ++    .++ 
T Consensus        36 l~~~~~~~~~~~vLD~GcG~-G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~------d~----~~~~  103 (253)
T 3g5l_A           36 LKKMLPDFNQKTVLDLGCGF-GWHCIYAAEH-GAKKVLGIDLSERMLTEAKRKTTSPVVCYEQK------AI----EDIA  103 (253)
T ss_dssp             HHTTCCCCTTCEEEEETCTT-CHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHCCCTTEEEEEC------CG----GGCC
T ss_pred             HHHhhhccCCCEEEEECCCC-CHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhhccCCeEEEEc------ch----hhCC
Confidence            44445556889999999986 7778888776 44499999999988888877421   112211      11    111 


Q ss_pred             hCCCCccEEEEccC------ChhHHHHHHHHcccCCcEEEEE
Q 024295          152 THGMGVDYCFECTG------VPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       152 ~~~~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      .....||+|+-...      ....+..+.+.|++| |+++..
T Consensus       104 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~  144 (253)
T 3g5l_A          104 IEPDAYNVVLSSLALHYIASFDDICKKVYINLKSS-GSFIFS  144 (253)
T ss_dssp             CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             CCCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCC-cEEEEE
Confidence            12238999985432      133578889999996 998775

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=96.30  E-value=0.0098  Score=49.23  Aligned_cols=34  Identities=26%  Similarity=0.363  Sum_probs=30.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      .++++||+|+ |++|.+.+..+...|+ +|++++++
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~   60 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIG   60 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCc
Confidence            5788999986 8999999988888899 99999876

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.30  E-value=0.049  Score=43.91  Aligned_cols=91  Identities=21%  Similarity=0.257  Sum_probs=60.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhCCCc-eeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAA-KIIGIDKNPWKKEKGKAFGMT-DFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~-~v~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+|.|+|+|.+|.+.++.++..|.. +|++.++++++.+.+++.|.. .....       ..    +.... ..|+|+.|
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~-------~~----~~~~~-~aDvVila   69 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTS-------IA----KVEDF-SPDFVMLS   69 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESC-------GG----GGGGT-CCSEEEEC
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCC-------HH----HHhcC-CCCEEEEc
Confidence            3689999999999998888887753 799999999988888888753 12211       11    11111 57999999


Q ss_pred             cCChhH---HHHHHHHcccCCcEEEEEcc
Q 024295          164 TGVPSL---LSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       164 ~g~~~~---~~~~~~~l~~~~G~~v~~g~  189 (269)
                      +.....   +..+...++++ ..++.++.
T Consensus        70 vp~~~~~~v~~~l~~~l~~~-~iv~~~~~   97 (281)
T 2g5c_A           70 SPVRTFREIAKKLSYILSED-ATVTDQGS   97 (281)
T ss_dssp             SCHHHHHHHHHHHHHHSCTT-CEEEECCS
T ss_pred             CCHHHHHHHHHHHHhhCCCC-cEEEECCC
Confidence            975432   22333456664 66665543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=96.30  E-value=0.029  Score=44.89  Aligned_cols=105  Identities=13%  Similarity=0.111  Sum_probs=65.2

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-------CC---ceeeCCCCCCCccHH-HH
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-------GM---TDFINPDDEPNKSIS-EL  147 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-------g~---~~v~~~~~~~~~~~~-~~  147 (269)
                      .....++.+||-+|+|+ |..+..+++.....+|++++.+++..+.+++.       +.   -.++..+-   .++. +.
T Consensus        31 ~~~~~~~~~VLDlG~G~-G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~---~~~~~~~  106 (260)
T 2ozv_A           31 LVADDRACRIADLGAGA-GAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV---TLRAKAR  106 (260)
T ss_dssp             TCCCCSCEEEEECCSSS-SHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCT---TCCHHHH
T ss_pred             HhcccCCCEEEEeCChH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCH---HHHhhhh
Confidence            34566788999999875 77777777776333999999999888887652       21   12332221   2221 11


Q ss_pred             HHhhhCCCCccEEEEccC------------------------ChhHHHHHHHHcccCCcEEEEEc
Q 024295          148 VKGITHGMGVDYCFECTG------------------------VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       148 i~~~~~~~~~d~v~d~~g------------------------~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ..+......||+|+-.-.                        -...+..+.+.|+++ |+++.+-
T Consensus       107 ~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  170 (260)
T 2ozv_A          107 VEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSG-GQLSLIS  170 (260)
T ss_dssp             HHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             hhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCC-CEEEEEE
Confidence            111122337999875410                        123467778899996 9988764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.30  E-value=0.017  Score=46.53  Aligned_cols=91  Identities=20%  Similarity=0.158  Sum_probs=62.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      .+|||+|+|.+|...+..+...|. +|+++++++++.+.+...+...+.-.-    .++.        -.++|+||.+++
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~----~d~~--------~~~~d~vi~~a~   72 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRASGAEPLLWPG----EEPS--------LDGVTHLLISTA   72 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHHTTEEEEESSS----SCCC--------CTTCCEEEECCC
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhhCCCeEEEecc----cccc--------cCCCCEEEECCC
Confidence            579999999999999999888899 999999999888777766654433211    1111        237999999986


Q ss_pred             Ch----hHHHHHHHHccc---CCcEEEEEcc
Q 024295          166 VP----SLLSEALETTKV---GKGKVIVIGV  189 (269)
Q Consensus       166 ~~----~~~~~~~~~l~~---~~G~~v~~g~  189 (269)
                      ..    .....+++.++.   +-.+++.++.
T Consensus        73 ~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss  103 (286)
T 3ius_A           73 PDSGGDPVLAALGDQIAARAAQFRWVGYLST  103 (286)
T ss_dssp             CBTTBCHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             ccccccHHHHHHHHHHHhhcCCceEEEEeec
Confidence            42    123444444433   1257877763

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=96.29  E-value=0.0032  Score=53.29  Aligned_cols=90  Identities=20%  Similarity=0.276  Sum_probs=52.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc---eeeCCCCCCCccHHHHHHhhhCC
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT---DFINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~---~v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      ..+|++||-+|+|. |++++..| ..|+++|++++.++ -.+.++    ..|..   .++..+-   .       ++.-.
T Consensus        81 ~~~~k~VLDvG~Gt-GiLs~~Aa-~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~---~-------~~~lp  147 (376)
T 4hc4_A           81 ALRGKTVLDVGAGT-GILSIFCA-QAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPV---E-------TVELP  147 (376)
T ss_dssp             HHTTCEEEEETCTT-SHHHHHHH-HTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCT---T-------TCCCS
T ss_pred             hcCCCEEEEeCCCc-cHHHHHHH-HhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeee---e-------eecCC
Confidence            34789999999876 77665444 46888999999874 344443    33432   2332221   1       11112


Q ss_pred             CCccEEEE-ccC----C----hhHHHHHHHHcccCCcEEE
Q 024295          155 MGVDYCFE-CTG----V----PSLLSEALETTKVGKGKVI  185 (269)
Q Consensus       155 ~~~d~v~d-~~g----~----~~~~~~~~~~l~~~~G~~v  185 (269)
                      .++|+|+- ..+    .    +..+...-+.|+++ |.++
T Consensus       148 e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~-G~~i  186 (376)
T 4hc4_A          148 EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEG-GLLL  186 (376)
T ss_dssp             SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEE-EEEE
T ss_pred             ccccEEEeecccccccccchhhhHHHHHHhhCCCC-ceEC
Confidence            38999973 221    1    22233444789996 8764

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=96.29  E-value=0.027  Score=46.56  Aligned_cols=139  Identities=13%  Similarity=0.136  Sum_probs=80.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEE-cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhh--CCCCccEEE
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGI-DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGIT--HGMGVDYCF  161 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~--~~~~~d~v~  161 (269)
                      -++.|+|+ |.+|..-+...+..+. +++++ ++++++....+.++...++..-    +++.+.+.++.  ....+|+|+
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~-~lvav~d~~~~~~~~~~~~~~~~~~~~~----~~ll~~~~~l~~~~~~~vD~V~   78 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGN-CLVSAYDINDSVGIIDSISPQSEFFTEF----EFFLDHASNLKRDSATALDYVS   78 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTC-EEEEEECSSCCCGGGGGTCTTCEEESSH----HHHHHHHHHHTTSTTTSCCEEE
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCC-EEEEEEcCCHHHHHHHhhCCCCcEECCH----HHHHHhhhhhhhccCCCCcEEE
Confidence            36889998 6789877777777787 55544 5566654344445433444211    22222112221  234899999


Q ss_pred             EccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceE-EeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          162 ECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTL-KGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      -++....+.+.+..++..  |+-|++..+.. ...-....+.    .++..+ .+..   +.....+..+.+++.+|.+
T Consensus        79 I~tP~~~H~~~~~~al~a--GkhVl~EKPla-~~~~ea~~l~~~a~~~g~~~~v~~~---~R~~p~~~~~k~~i~~g~i  151 (318)
T 3oa2_A           79 ICSPNYLHYPHIAAGLRL--GCDVICEKPLV-PTPEMLDQLAVIERETDKRLYNILQ---LRHHQAIIALKDKVAREKS  151 (318)
T ss_dssp             ECSCGGGHHHHHHHHHHT--TCEEEECSSCC-SCHHHHHHHHHHHHHHTCCEEECCG---GGGCHHHHHHHHHHHHS-C
T ss_pred             ECCCcHHHHHHHHHHHHC--CCeEEEECCCc-CCHHHHHHHHHHHHHhCCEEEEEEh---hhcCHHHHHHHHHHhcCCC
Confidence            999887788888888887  67788876543 1111112222    234433 2322   1123457788889988865

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.29  E-value=0.0081  Score=47.68  Aligned_cols=80  Identities=23%  Similarity=0.256  Sum_probs=50.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC-cchHHHHH----hCCCc-ee--eCCCCCCCccHHHHHHhhhCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN-PWKKEKGK----AFGMT-DF--INPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~-~~~~~~~~----~~g~~-~v--~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      +++++||+|+ |.+|.+.+..+...|+ +|++++++ +++.+.+.    ..+.. ..  .|-.+  ++.+.+.+.+....
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGGDAAFFAADLAT--SEACQQLVDEFVAK   82 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4678999986 9999999998888999 99999988 66555432    22422 12  23222  12233333322111


Q ss_pred             -CCccEEEEccCC
Q 024295          155 -MGVDYCFECTGV  166 (269)
Q Consensus       155 -~~~d~v~d~~g~  166 (269)
                       .++|++++++|.
T Consensus        83 ~g~id~vi~~Ag~   95 (258)
T 3afn_B           83 FGGIDVLINNAGG   95 (258)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             279999999874

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.29  E-value=0.018  Score=46.56  Aligned_cols=80  Identities=18%  Similarity=0.159  Sum_probs=49.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcC-CcchHHHH----HhCCCce-e--eCCCCCCCccHHHHHHhhhCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDK-NPWKKEKG----KAFGMTD-F--INPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~-~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+++++ ++++.+.+    +..+... .  .|-.+  .++..+.+.+....
T Consensus        28 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  104 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLAD--LSSHQATVDAVVAE  104 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTS--GGGHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHH
Confidence            5788999986 8999999999889999 8988885 55544432    2334321 2  23332  23333333322110


Q ss_pred             -CCccEEEEccCC
Q 024295          155 -MGVDYCFECTGV  166 (269)
Q Consensus       155 -~~~d~v~d~~g~  166 (269)
                       .++|++++++|.
T Consensus       105 ~g~iD~lvnnAg~  117 (280)
T 4da9_A          105 FGRIDCLVNNAGI  117 (280)
T ss_dssp             HSCCCEEEEECC-
T ss_pred             cCCCCEEEECCCc
Confidence             279999999875

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.28  E-value=0.0017  Score=52.40  Aligned_cols=73  Identities=21%  Similarity=0.229  Sum_probs=47.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHH----HHHHhhhCCCCcc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSIS----ELVKGITHGMGVD  158 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~----~~i~~~~~~~~~d  158 (269)
                      .++++||+|+ |++|.+.++.+...|+ +|+.++++.++.+.....    ..|-.+   .+..    +.+.+.. + ++|
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~----~~Dv~~---~~~~~~~~~~~~~~~-g-~iD   96 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAGIAADLHL----PGDLRE---AAYADGLPGAVAAGL-G-RLD   96 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTTSCCSEEC----CCCTTS---HHHHHHHHHHHHHHH-S-CCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHhhhcc----CcCCCC---HHHHHHHHHHHHHhc-C-CCC
Confidence            5788999986 8999999998888999 999999876544322111    112221   2222    2222222 2 799


Q ss_pred             EEEEccCC
Q 024295          159 YCFECTGV  166 (269)
Q Consensus       159 ~v~d~~g~  166 (269)
                      ++++++|.
T Consensus        97 ~lvnnAg~  104 (266)
T 3uxy_A           97 IVVNNAGV  104 (266)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999874

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.28  E-value=0.012  Score=46.84  Aligned_cols=99  Identities=18%  Similarity=0.201  Sum_probs=63.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhC-CCCccEEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITH-GMGVDYCF  161 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~-~~~~d~v~  161 (269)
                      -++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+..     ...++-.+  .++..+.+.+... ..++|+++
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~-----~~~~d~~d--~~~v~~~~~~~~~~~g~iD~li   92 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENPNADH-----SFTIKDSG--EEEIKSVIEKINSKSIKVDTFV   92 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTTSSE-----EEECSCSS--HHHHHHHHHHHHTTTCCEEEEE
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccccccc-----ceEEEeCC--HHHHHHHHHHHHHHcCCCCEEE
Confidence            3688999986 8999999999888999 899999887654311     11222222  1333333333322 13799999


Q ss_pred             EccCCh-------h-------------------HHHHHHHHcccCCcEEEEEccCC
Q 024295          162 ECTGVP-------S-------------------LLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       162 d~~g~~-------~-------------------~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      +++|..       .                   ..+.++..++++ |+++.++...
T Consensus        93 ~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~~  147 (251)
T 3orf_A           93 CAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQG-GLFVLTGASA  147 (251)
T ss_dssp             ECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGG
T ss_pred             ECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccC-CEEEEEechh
Confidence            998730       0                   123445566674 8999997654

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.27  E-value=0.016  Score=46.78  Aligned_cols=33  Identities=24%  Similarity=0.263  Sum_probs=29.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDK  117 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~  117 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+++++
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r   47 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDI   47 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEec
Confidence            6789999986 8999999999889999 9999987

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.26  E-value=0.024  Score=49.14  Aligned_cols=104  Identities=14%  Similarity=0.144  Sum_probs=68.3

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHH-cCC--CeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARM-HGA--AKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~-~g~--~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      ++....+|+|+|+|++|..++.++.. .+.  ..|+.++..+.+.+..+..|.....-.-+  .++..+.+..+..+ + 
T Consensus         9 ~~~~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vd--adnv~~~l~aLl~~-~-   84 (480)
T 2ph5_A            9 KILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQIT--PQNYLEVIGSTLEE-N-   84 (480)
T ss_dssp             CBCCCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCC--TTTHHHHTGGGCCT-T-
T ss_pred             eecCCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEecc--chhHHHHHHHHhcC-C-
Confidence            44556789999999999999877765 444  37888887776666565566433222211  25555556555554 4 


Q ss_pred             cEEEEccCChhHHHHHHHHcccCCcEEEEEcc
Q 024295          158 DYCFECTGVPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       158 d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      |+|++++-....+..+-.++..| -.++....
T Consensus        85 DvVIN~s~~~~~l~Im~acleaG-v~YlDTa~  115 (480)
T 2ph5_A           85 DFLIDVSIGISSLALIILCNQKG-ALYINAAT  115 (480)
T ss_dssp             CEEEECCSSSCHHHHHHHHHHHT-CEEEESSC
T ss_pred             CEEEECCccccCHHHHHHHHHcC-CCEEECCC
Confidence            99999775544555566667775 77777764

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.26  E-value=0.022  Score=49.20  Aligned_cols=102  Identities=15%  Similarity=0.196  Sum_probs=68.2

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-eeeCCCCCCCccHHHHHHhhh
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      .....+++++||-+|+|+ |..+.++++..+..+|++++.++++.+.+++    .|.. .++..+.   .++...   + 
T Consensus       240 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~---~~~~~~---~-  311 (429)
T 1sqg_A          240 TWLAPQNGEHILDLCAAP-GGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG---RYPSQW---C-  311 (429)
T ss_dssp             HHHCCCTTCEEEEESCTT-CHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT---TCTHHH---H-
T ss_pred             HHcCCCCcCeEEEECCCc-hHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCch---hhchhh---c-
Confidence            345678999999999887 7788888887753499999999988887754    3532 2332221   222211   1 


Q ss_pred             CCCCccEEEE---ccCC-------------------------hhHHHHHHHHcccCCcEEEEEc
Q 024295          153 HGMGVDYCFE---CTGV-------------------------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       153 ~~~~~d~v~d---~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .+..||.|+-   |.|.                         ...+..+++.+++| |+++...
T Consensus       312 ~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpG-G~lvyst  374 (429)
T 1sqg_A          312 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG-GTLVYAT  374 (429)
T ss_dssp             TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred             ccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEE
Confidence            2237999874   4432                         13467788899996 9988764

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=96.25  E-value=0.026  Score=43.92  Aligned_cols=101  Identities=25%  Similarity=0.225  Sum_probs=64.1

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhC
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      ...++++++||-+|+|. |..+..+++..|. .+|++++.+++..+.+++    ...-.++..+-   .+.. .... .+
T Consensus        68 ~~~~~~~~~vLDlG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~---~~~~-~~~~-~~  141 (227)
T 1g8a_A           68 NFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDA---TKPE-EYRA-LV  141 (227)
T ss_dssp             CCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCT---TCGG-GGTT-TC
T ss_pred             hcCCCCCCEEEEEeccC-CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccC---CCcc-hhhc-cc
Confidence            34577899999999987 8888889988752 399999999865555433    21112222111   1110 0001 12


Q ss_pred             CCCccEEEEccCCh----hHHHHHHHHcccCCcEEEEE
Q 024295          154 GMGVDYCFECTGVP----SLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       154 ~~~~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~  187 (269)
                      + .+|+|+-....+    ..+..+.+.|++| |+++..
T Consensus       142 ~-~~D~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~  177 (227)
T 1g8a_A          142 P-KVDVIFEDVAQPTQAKILIDNAEVYLKRG-GYGMIA  177 (227)
T ss_dssp             C-CEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             C-CceEEEECCCCHhHHHHHHHHHHHhcCCC-CEEEEE
Confidence            2 799998554433    2277888999996 998876

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=96.25  E-value=0.008  Score=48.13  Aligned_cols=93  Identities=11%  Similarity=0.157  Sum_probs=62.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+.+||-+|+|+ |..+..+++. +. +|+++|.+++..+.+++...-..+..+.   .++     .+ ++..||+|+-+
T Consensus        39 ~~~~vLDvGcGt-G~~~~~l~~~-~~-~v~gvD~s~~ml~~a~~~~~v~~~~~~~---e~~-----~~-~~~sfD~v~~~  106 (257)
T 4hg2_A           39 ARGDALDCGCGS-GQASLGLAEF-FE-RVHAVDPGEAQIRQALRHPRVTYAVAPA---EDT-----GL-PPASVDVAIAA  106 (257)
T ss_dssp             CSSEEEEESCTT-TTTHHHHHTT-CS-EEEEEESCHHHHHTCCCCTTEEEEECCT---TCC-----CC-CSSCEEEEEEC
T ss_pred             CCCCEEEEcCCC-CHHHHHHHHh-CC-EEEEEeCcHHhhhhhhhcCCceeehhhh---hhh-----cc-cCCcccEEEEe
Confidence            457899999986 8877777654 66 9999999988877776643222222211   111     11 23379999764


Q ss_pred             cC-----ChhHHHHHHHHcccCCcEEEEEcc
Q 024295          164 TG-----VPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       164 ~g-----~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      ..     .+..+.++.+.|+|| |+++.+..
T Consensus       107 ~~~h~~~~~~~~~e~~rvLkpg-G~l~~~~~  136 (257)
T 4hg2_A          107 QAMHWFDLDRFWAELRRVARPG-AVFAAVTY  136 (257)
T ss_dssp             SCCTTCCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             eehhHhhHHHHHHHHHHHcCCC-CEEEEEEC
Confidence            32     244688999999996 99887753

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=96.25  E-value=0.021  Score=43.40  Aligned_cols=94  Identities=21%  Similarity=0.247  Sum_probs=58.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhC----CCC
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITH----GMG  156 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~----~~~  156 (269)
                      ++++.+||-+|+|+ |..+..+++. +. +|+++|.++...    .-+...+. |-.+   ....+.+.+..+    + .
T Consensus        23 ~~~g~~VLDlG~G~-G~~s~~la~~-~~-~V~gvD~~~~~~----~~~v~~~~~D~~~---~~~~~~~~~~~~~~~~~-~   91 (191)
T 3dou_A           23 VRKGDAVIEIGSSP-GGWTQVLNSL-AR-KIISIDLQEMEE----IAGVRFIRCDIFK---ETIFDDIDRALREEGIE-K   91 (191)
T ss_dssp             SCTTCEEEEESCTT-CHHHHHHTTT-CS-EEEEEESSCCCC----CTTCEEEECCTTS---SSHHHHHHHHHHHHTCS-S
T ss_pred             CCCCCEEEEEeecC-CHHHHHHHHc-CC-cEEEEecccccc----CCCeEEEEccccC---HHHHHHHHHHhhcccCC-c
Confidence            57899999999876 6666666666 66 999999886431    01222222 2222   344444544433    4 8


Q ss_pred             ccEEEEc-----cCC------------hhHHHHHHHHcccCCcEEEEE
Q 024295          157 VDYCFEC-----TGV------------PSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       157 ~d~v~d~-----~g~------------~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      ||+|+--     .|.            ...+..+.+.|++| |+++..
T Consensus        92 ~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpG-G~lv~k  138 (191)
T 3dou_A           92 VDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNG-GNVLLK  138 (191)
T ss_dssp             EEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             ceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCC-CEEEEE
Confidence            9999842     232            12356678899996 998854

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=96.24  E-value=0.008  Score=47.92  Aligned_cols=80  Identities=15%  Similarity=0.117  Sum_probs=49.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcC-CcchHHHH----HhCCCce-e--eCCCCCCCccHHHHHHhhhCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDK-NPWKKEKG----KAFGMTD-F--INPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~-~~~~~~~~----~~~g~~~-v--~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      +++++||+|+ |.+|.+.+..+...|+ +|+++++ ++++.+.+    ++.+... +  .|-.+  .+.+.+.+.+....
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV--ESDVINLVQSAIKE   82 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4678999986 9999999988888899 8999998 66554433    2234321 2  23222  12232223222110


Q ss_pred             -CCccEEEEccCC
Q 024295          155 -MGVDYCFECTGV  166 (269)
Q Consensus       155 -~~~d~v~d~~g~  166 (269)
                       .++|++++++|.
T Consensus        83 ~g~id~li~~Ag~   95 (261)
T 1gee_A           83 FGKLDVMINNAGL   95 (261)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             179999998873

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.24  E-value=0.0083  Score=47.46  Aligned_cols=36  Identities=25%  Similarity=0.357  Sum_probs=30.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchH
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKK  122 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~  122 (269)
                      +++||+|+ |.+|..++..+...|+ +|+++++++++.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~-~V~~~~r~~~~~   38 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH-TVIGIDRGQADI   38 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSE
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCChhHc
Confidence            46899986 9999999988888899 999999876543

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.23  E-value=0.016  Score=46.00  Aligned_cols=81  Identities=17%  Similarity=0.190  Sum_probs=49.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhC--CCc-ee--eCCCCCCC-ccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW--KKEKGKAF--GMT-DF--INPDDEPN-KSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~--~~~~~~~~--g~~-~v--~~~~~~~~-~~~~~~i~~~~~-  153 (269)
                      +++++||+|+ |.+|.+.++.+...|+++|++++++++  ..+.+++.  +.. .+  .|-.+  + +...+.+.+... 
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTV--PVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTS--CHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCC--ChHHHHHHHHHHHHh
Confidence            4678999986 899999999888899944888888763  33333332  221 12  23322  2 223222322211 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      -.++|++++++|.
T Consensus        82 ~g~id~lv~~Ag~   94 (254)
T 1sby_A           82 LKTVDILINGAGI   94 (254)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            0279999999873

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.23  E-value=0.014  Score=46.41  Aligned_cols=78  Identities=14%  Similarity=0.189  Sum_probs=47.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce---eeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD---FINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.++++.+  +..++++...   ..|-.+  .++..+.+.....-.++|+
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~--~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~g~id~   82 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGE--DVVADLGDRARFAAADVTD--EAAVASALDLAETMGTLRI   82 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCH--HHHHHTCTTEEEEECCTTC--HHHHHHHHHHHHHHSCEEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchH--HHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHhCCCCE
Confidence            4688999986 8999999988888899 9999987543  3344454321   223322  1222222221111127999


Q ss_pred             EEEccCC
Q 024295          160 CFECTGV  166 (269)
Q Consensus       160 v~d~~g~  166 (269)
                      +++++|.
T Consensus        83 lv~nAg~   89 (257)
T 3tl3_A           83 VVNCAGT   89 (257)
T ss_dssp             EEECGGG
T ss_pred             EEECCCC
Confidence            9999873

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=96.23  E-value=0.076  Score=40.81  Aligned_cols=97  Identities=13%  Similarity=0.102  Sum_probs=64.0

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC--ceeeCCCCCCCccHHHHHHhhhCCCC
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM--TDFINPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~--~~v~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      .++.+||-+|+|. |..+..+++.....++++++.+++..+.+++    .+.  -.++..+-   .++    .+......
T Consensus        40 ~~~~~vLDiGcG~-G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~---~~~----~~~~~~~~  111 (214)
T 1yzh_A           40 NDNPIHVEVGSGK-GAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG---SDL----TDYFEDGE  111 (214)
T ss_dssp             SCCCEEEEESCTT-SHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCS---SCG----GGTSCTTC
T ss_pred             CCCCeEEEEccCc-CHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCH---HHH----HhhcCCCC
Confidence            3578899999986 8888888888743399999999888777654    232  22332221   111    11122237


Q ss_pred             ccEEEEccCC--------------hhHHHHHHHHcccCCcEEEEEc
Q 024295          157 VDYCFECTGV--------------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       157 ~d~v~d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +|.|+-....              ...+..+.+.|++| |.++...
T Consensus       112 ~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~  156 (214)
T 1yzh_A          112 IDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPEN-GEIHFKT  156 (214)
T ss_dssp             CSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             CCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCC-cEEEEEe
Confidence            9988754433              24678889999996 9987754

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.23  E-value=0.0095  Score=47.63  Aligned_cols=80  Identities=16%  Similarity=0.115  Sum_probs=49.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEE-cCCcchHHHHH----hCCCce-e--eCCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGI-DKNPWKKEKGK----AFGMTD-F--INPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~-~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-  153 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+.+ ++++++.+.+.    +.+... .  .|-.+  .++..+.+.+... 
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   79 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQ--PAKIKEMFQQIDET   79 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5788999986 8999999999999999 87776 77776655432    234322 2  23222  1222222222211 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      -.++|++++++|.
T Consensus        80 ~g~id~lv~nAg~   92 (258)
T 3oid_A           80 FGRLDVFVNNAAS   92 (258)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            0279999999863

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=96.23  E-value=0.035  Score=45.14  Aligned_cols=102  Identities=11%  Similarity=-0.008  Sum_probs=61.3

Q ss_pred             HhcCCC-CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc-eeeCCCCCCCccHHHHHHhhhCCC
Q 024295           78 KEAKVE-KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT-DFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        78 ~~~~~~-~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      ....+. ++.+||-+|+|+ |..+..+++. |+.+|+++|.+++.++...+.... ..+...+   -....  .+..+..
T Consensus        78 ~~~~~~~~g~~vLDiGcGT-G~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~n---i~~l~--~~~l~~~  150 (291)
T 3hp7_A           78 AVFNLSVEDMITIDIGAST-GGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYN---FRYAE--PVDFTEG  150 (291)
T ss_dssp             HHTTCCCTTCEEEEETCTT-SHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCC---GGGCC--GGGCTTC
T ss_pred             HhcCCCccccEEEecCCCc-cHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccC---ceecc--hhhCCCC
Confidence            334444 578999999986 7777666665 777999999998887773332111 1111111   00000  0111222


Q ss_pred             CccEEE-Ecc--CChhHHHHHHHHcccCCcEEEEE
Q 024295          156 GVDYCF-ECT--GVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       156 ~~d~v~-d~~--g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      .||+++ |.+  .-...+.++.+.|++| |+++.+
T Consensus       151 ~fD~v~~d~sf~sl~~vL~e~~rvLkpG-G~lv~l  184 (291)
T 3hp7_A          151 LPSFASIDVSFISLNLILPALAKILVDG-GQVVAL  184 (291)
T ss_dssp             CCSEEEECCSSSCGGGTHHHHHHHSCTT-CEEEEE
T ss_pred             CCCEEEEEeeHhhHHHHHHHHHHHcCcC-CEEEEE
Confidence            488764 322  2344689999999997 999887

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.23  E-value=0.0077  Score=48.42  Aligned_cols=79  Identities=13%  Similarity=0.199  Sum_probs=49.9

Q ss_pred             CCCeEEEEc---CChhHHHHHHHHHHcCCCeEEEEcCCcch-HHHH-HhCCCc--e-eeCCCCCCCccHHHHHHhh---h
Q 024295           84 KGSSVAVLG---LGTVGLGAVDGARMHGAAKIIGIDKNPWK-KEKG-KAFGMT--D-FINPDDEPNKSISELVKGI---T  152 (269)
Q Consensus        84 ~~~~vlI~G---~g~~G~~a~~la~~~g~~~v~~~~~~~~~-~~~~-~~~g~~--~-v~~~~~~~~~~~~~~i~~~---~  152 (269)
                      +++++||+|   +|.+|.+.++.+...|+ +|+.+++++++ .+.+ ++++..  . ..|-.+  ++...+.+.+.   .
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   82 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQN--EEHLASLAGRVTEAI   82 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHhcCCCceEEEccCCC--HHHHHHHHHHHHHHh
Confidence            468899998   47899999998888999 99999988755 2333 334422  1 223332  12222222222   2


Q ss_pred             C-CCCccEEEEccC
Q 024295          153 H-GMGVDYCFECTG  165 (269)
Q Consensus       153 ~-~~~~d~v~d~~g  165 (269)
                      + ..++|++++++|
T Consensus        83 g~~~~iD~lv~nAg   96 (269)
T 2h7i_A           83 GAGNKLDGVVHSIG   96 (269)
T ss_dssp             CTTCCEEEEEECCC
T ss_pred             CCCCCceEEEECCc
Confidence            2 126999999887

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=96.22  E-value=0.02  Score=45.86  Aligned_cols=80  Identities=18%  Similarity=0.228  Sum_probs=49.6

Q ss_pred             CCCeEEEEcC---ChhHHHHHHHHHHcCCCeEEEEcCCcc---hHHHHHh-CCCceee--CCCCCCCccHHHHHHhhhCC
Q 024295           84 KGSSVAVLGL---GTVGLGAVDGARMHGAAKIIGIDKNPW---KKEKGKA-FGMTDFI--NPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        84 ~~~~vlI~G~---g~~G~~a~~la~~~g~~~v~~~~~~~~---~~~~~~~-~g~~~v~--~~~~~~~~~~~~~i~~~~~~  154 (269)
                      +++++||+|+   |.+|.+.++.+...|+ +|+.++++++   ..+.+.+ .+....+  |-.+  .+.+.+.+.+....
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~   84 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAE--DASIDTMFAELGKV   84 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC--HHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCC--HHHHHHHHHHHHHH
Confidence            4688999984   6899999998888999 9999998762   2222222 3322222  3332  12233333333221


Q ss_pred             -CCccEEEEccCC
Q 024295          155 -MGVDYCFECTGV  166 (269)
Q Consensus       155 -~~~d~v~d~~g~  166 (269)
                       .++|++++++|.
T Consensus        85 ~g~iD~lv~~Ag~   97 (265)
T 1qsg_A           85 WPKFDGFVHSIGF   97 (265)
T ss_dssp             CSSEEEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             279999999873

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=96.22  E-value=0.013  Score=47.46  Aligned_cols=80  Identities=18%  Similarity=0.193  Sum_probs=50.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCce-e--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTD-F--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      .++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    +.+... .  .|-.+  .+.+.+.+.+... -
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~~  119 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK--KEEISEVINKILTEH  119 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCC--HHHHHHHHHHHHHhc
Confidence            4678999986 8999999988888899 8988888876655432    234321 2  23322  1223333332211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus       120 ~~id~li~~Ag~  131 (285)
T 2c07_A          120 KNVDILVNNAGI  131 (285)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            279999999874

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.22  E-value=0.064  Score=41.81  Aligned_cols=93  Identities=17%  Similarity=0.213  Sum_probs=57.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcc-hHHHHHhCC-CceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW-KKEKGKAFG-MTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~-~~~~~~~~g-~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      .+.+|||+|+|.+|...+..+...|+ +|+++++... ..+.+.+.+ ... +...- .+.+       +   .++|+||
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~l~~~~~i~~-i~~~~-~~~d-------L---~~adLVI   96 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVSAEINEWEAKGQLRV-KRKKV-GEED-------L---LNVFFIV   96 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCCHHHHHHHHTTSCEE-ECSCC-CGGG-------S---SSCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHcCCcEE-EECCC-CHhH-------h---CCCCEEE
Confidence            57899999999999999999999999 8888876542 233333333 332 22110 0111       1   2799999


Q ss_pred             EccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          162 ECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      -+++.+.. +..+...+.. |..|..-+.+
T Consensus        97 aAT~d~~~-N~~I~~~ak~-gi~VNvvD~p  124 (223)
T 3dfz_A           97 VATNDQAV-NKFVKQHIKN-DQLVNMASSF  124 (223)
T ss_dssp             ECCCCTHH-HHHHHHHSCT-TCEEEC----
T ss_pred             ECCCCHHH-HHHHHHHHhC-CCEEEEeCCc
Confidence            99988744 4444444444 7777665433

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=96.21  E-value=0.018  Score=45.42  Aligned_cols=39  Identities=23%  Similarity=0.237  Sum_probs=32.8

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchH
Q 024295           83 EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKK  122 (269)
Q Consensus        83 ~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~  122 (269)
                      .+++++||+|+ |.+|.+.++.+...|+ +|+++++++++.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~   44 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEE   44 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCChhhc
Confidence            35788999986 8999999999888899 999999887653

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=96.21  E-value=0.0093  Score=47.75  Aligned_cols=80  Identities=20%  Similarity=0.243  Sum_probs=49.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHH-cCCCeEEEEcCCcchHHHH----HhCCCc-ee--eCCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARM-HGAAKIIGIDKNPWKKEKG----KAFGMT-DF--INPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~-~g~~~v~~~~~~~~~~~~~----~~~g~~-~v--~~~~~~~~~~~~~~i~~~~~-  153 (269)
                      +++++||+|+ |.+|.+.+..+.. .|+ +|++++++.++.+.+    +..+.. .+  .|-.+  ...+.+.+.+... 
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD--LQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCC--HHHHHHHHHHHHHh
Confidence            5688999986 9999998888877 899 999999987655443    222321 12  23222  1223222322211 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      -.++|++++++|.
T Consensus        80 ~g~id~li~~Ag~   92 (276)
T 1wma_A           80 YGGLDVLVNNAGI   92 (276)
T ss_dssp             HSSEEEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            0279999999863

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=96.21  E-value=0.0073  Score=52.54  Aligned_cols=103  Identities=20%  Similarity=0.245  Sum_probs=67.5

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHHh
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVKG  150 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~  150 (269)
                      .....+++++||-+|+|+ |..+.++++.++. .+|++++.++++.+.+++    +|..  .++..+.   .++.    .
T Consensus       253 ~~l~~~~g~~VLDlgaG~-G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~---~~~~----~  324 (450)
T 2yxl_A          253 IVLDPKPGETVVDLAAAP-GGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDA---RKAP----E  324 (450)
T ss_dssp             HHHCCCTTCEEEESSCTT-CHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCT---TCCS----S
T ss_pred             HhcCCCCcCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcCh---hhcc----h
Confidence            345678999999999887 7778888887643 499999999988877654    4642  2332221   1110    0


Q ss_pred             hhCCCCccEEEE---ccCC-------------------------hhHHHHHHHHcccCCcEEEEEcc
Q 024295          151 ITHGMGVDYCFE---CTGV-------------------------PSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       151 ~~~~~~~d~v~d---~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      ...+..||+|+-   |.|.                         ...+..+.+.+++| |+++....
T Consensus       325 ~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG-G~lvy~tc  390 (450)
T 2yxl_A          325 IIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPG-GRLLYTTC  390 (450)
T ss_dssp             SSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEE-EEEEEEES
T ss_pred             hhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEeC
Confidence            012136999874   3332                         23577888899996 99987543

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=96.20  E-value=0.028  Score=47.05  Aligned_cols=131  Identities=17%  Similarity=0.109  Sum_probs=75.9

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHc-CCCeEEEE-cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           86 SSVAVLGLGTVGLG-AVDGARMH-GAAKIIGI-DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        86 ~~vlI~G~g~~G~~-a~~la~~~-g~~~v~~~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      -+|.|+|+|.+|.. .+..++.. ++ +++++ ++++++.+  +.++...++       .++.+.+.    ...+|+|+.
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~-~l~av~d~~~~~~~--~~~~~~~~~-------~~~~~ll~----~~~vD~V~i   73 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGL-ELAGVSSSDASKVH--ADWPAIPVV-------SDPQMLFN----DPSIDLIVI   73 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTE-EEEEEECSCHHHHH--TTCSSCCEE-------SCHHHHHH----CSSCCEEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCc-EEEEEECCCHHHHH--hhCCCCceE-------CCHHHHhc----CCCCCEEEE
Confidence            46899999999985 56655554 66 66544 55555544  333322233       33433332    237999999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      |+....+...+..+++.  |+-|++..+.. ...-....+.    .++..+.-...  +.....+..+.+++.+|.+
T Consensus        74 ~tp~~~H~~~~~~al~a--GkhV~~EKPla-~~~~e~~~l~~~a~~~g~~~~v~~~--~r~~p~~~~~~~~i~~g~i  145 (352)
T 3kux_A           74 PTPNDTHFPLAQSALAA--GKHVVVDKPFT-VTLSQANALKEHADDAGLLLSVFHN--RRWDSDFLTLKTLLAEGSL  145 (352)
T ss_dssp             CSCTTTHHHHHHHHHHT--TCEEEECSSCC-SCHHHHHHHHHHHHHTTCCEEECCG--GGGCHHHHHHHHHHHHTTT
T ss_pred             eCChHHHHHHHHHHHHC--CCcEEEECCCc-CCHHHHHHHHHHHHHcCCeEEEEee--cccCHHHHHHHHHHhcCCC
Confidence            99887788888888877  57677765532 1111111222    23444432221  1122457788888888775

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=96.20  E-value=0.013  Score=48.33  Aligned_cols=34  Identities=24%  Similarity=0.264  Sum_probs=29.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      .++++||+|+ |++|.+.++.+...|+ +|++++++
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~   79 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLC   79 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecc
Confidence            5789999986 8999999999989999 99998765

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.19  E-value=0.02  Score=46.54  Aligned_cols=81  Identities=14%  Similarity=0.136  Sum_probs=50.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCC--CeEEEEcCCcchHHHHHh-C-----CCce---eeCCCCCCCccHHHHHHhh
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGA--AKIIGIDKNPWKKEKGKA-F-----GMTD---FINPDDEPNKSISELVKGI  151 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~--~~v~~~~~~~~~~~~~~~-~-----g~~~---v~~~~~~~~~~~~~~i~~~  151 (269)
                      .++++||+|+ |++|.+.+..+...|+  .+|+.+++++++.+.+.+ +     +...   ..|-.+  .+++.+.+.+.
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~  109 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQ--AEKIKPFIENL  109 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTC--GGGHHHHHHTS
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCC--HHHHHHHHHHH
Confidence            4689999986 8999998776665554  289999998877665432 1     3221   223332  23344444433


Q ss_pred             hCC-CCccEEEEccCC
Q 024295          152 THG-MGVDYCFECTGV  166 (269)
Q Consensus       152 ~~~-~~~d~v~d~~g~  166 (269)
                      ... .++|++++++|.
T Consensus       110 ~~~~g~iD~lVnnAG~  125 (287)
T 3rku_A          110 PQEFKDIDILVNNAGK  125 (287)
T ss_dssp             CGGGCSCCEEEECCCC
T ss_pred             HHhcCCCCEEEECCCc
Confidence            221 279999999873

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=96.19  E-value=0.06  Score=43.80  Aligned_cols=97  Identities=13%  Similarity=0.143  Sum_probs=64.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhC-------C-CceeeCCCCCCCccHHHHHHhhh
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAF-------G-MTDFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~-------g-~~~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      ..++.+||-+|+|. |..+..+++.. ...+|++++.+++..+.+++.       . ...++..+-   .++.     ..
T Consensus        34 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~---~~~~-----~~  104 (299)
T 3g5t_A           34 DGERKLLVDVGCGP-GTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS---DDFK-----FL  104 (299)
T ss_dssp             CSCCSEEEEETCTT-THHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCT---TCCG-----GG
T ss_pred             cCCCCEEEEECCCC-CHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCH---HhCC-----cc
Confidence            35789999999986 99999999865 444999999999888877653       1 112221111   1110     11


Q ss_pred             C-----CCCccEEEEccC-----ChhHHHHHHHHcccCCcEEEEEc
Q 024295          153 H-----GMGVDYCFECTG-----VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       153 ~-----~~~~d~v~d~~g-----~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .     ...||+|+-...     ....+..+.+.|++| |.++...
T Consensus       105 ~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lkpg-G~l~i~~  149 (299)
T 3g5t_A          105 GADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKD-GTIAIWG  149 (299)
T ss_dssp             CTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             ccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCC-cEEEEEe
Confidence            1     137999986432     144688899999996 9987743

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.18  E-value=0.011  Score=47.53  Aligned_cols=78  Identities=19%  Similarity=0.214  Sum_probs=48.4

Q ss_pred             CCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce-eeCCCCCCCccHHHHHHhhhC-CCCcc
Q 024295           82 VEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD-FINPDDEPNKSISELVKGITH-GMGVD  158 (269)
Q Consensus        82 ~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~-~~~~d  158 (269)
                      -.+++++||+|+ |++|.+.++.+...|+ +|+++++++++...    .... ..|-.+  .++..+.+.+... -.++|
T Consensus        11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~----~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~iD   83 (269)
T 3vtz_A           11 EFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSDVN----VSDHFKIDVTN--EEEVKEAVEKTTKKYGRID   83 (269)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--CTT----SSEEEECCTTC--HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhccC----ceeEEEecCCC--HHHHHHHHHHHHHHcCCCC
Confidence            346899999986 8999999998888999 99999987654421    1111 223332  1222222222211 02799


Q ss_pred             EEEEccCC
Q 024295          159 YCFECTGV  166 (269)
Q Consensus       159 ~v~d~~g~  166 (269)
                      ++++++|.
T Consensus        84 ~lv~nAg~   91 (269)
T 3vtz_A           84 ILVNNAGI   91 (269)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999874

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.18  E-value=0.008  Score=48.49  Aligned_cols=80  Identities=13%  Similarity=0.120  Sum_probs=50.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hC---C---Cc-ee--eCCCCCCCccHHHHHHhhh
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AF---G---MT-DF--INPDDEPNKSISELVKGIT  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~---g---~~-~v--~~~~~~~~~~~~~~i~~~~  152 (269)
                      .++++||+|+ |.+|.+.+..+...|+ +|+++++++++.+.+. ++   .   .. ..  .|-.+  ++.+.+.+.+..
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~   81 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT--DAGQDEILSTTL   81 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCC--HHHHHHHHHHHH
Confidence            4678999986 8999999988888899 9999999887665542 22   1   11 11  23322  122222222221


Q ss_pred             C-CCCccEEEEccCC
Q 024295          153 H-GMGVDYCFECTGV  166 (269)
Q Consensus       153 ~-~~~~d~v~d~~g~  166 (269)
                      . -.++|++++++|.
T Consensus        82 ~~~g~id~lv~~Ag~   96 (278)
T 1spx_A           82 GKFGKLDILVNNAGA   96 (278)
T ss_dssp             HHHSCCCEEEECCC-
T ss_pred             HHcCCCCEEEECCCC
Confidence            1 0279999999874

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=96.17  E-value=0.0052  Score=48.78  Aligned_cols=75  Identities=17%  Similarity=0.221  Sum_probs=49.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhh--CCCCccEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGIT--HGMGVDYC  160 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~--~~~~~d~v  160 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.  +  ...|-.+  .+...+.+.+..  .+ ++|++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~--~--~~~D~~~--~~~~~~~~~~~~~~~g-~id~l   85 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLF--G--VEVDVTD--SDAVDRAFTAVEEHQG-PVEVL   85 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSE--E--EECCTTC--HHHHHHHHHHHHHHHS-SCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHhc--C--eeccCCC--HHHHHHHHHHHHHHcC-CCCEE
Confidence            4688999986 8999999998888999 9999998876544322  1  2233332  122222222221  12 78999


Q ss_pred             EEccCC
Q 024295          161 FECTGV  166 (269)
Q Consensus       161 ~d~~g~  166 (269)
                      ++++|.
T Consensus        86 v~~Ag~   91 (247)
T 1uzm_A           86 VSNAGL   91 (247)
T ss_dssp             EEECSC
T ss_pred             EECCCC
Confidence            999874

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.17  E-value=0.029  Score=46.54  Aligned_cols=41  Identities=12%  Similarity=0.079  Sum_probs=34.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEc-CCcchHHHH
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGID-KNPWKKEKG  125 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~-~~~~~~~~~  125 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|++++ +++++.+.+
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~   87 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   87 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            4688999986 8999999999999999 999999 887766544

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.16  E-value=0.021  Score=47.49  Aligned_cols=44  Identities=20%  Similarity=0.299  Sum_probs=37.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG  129 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g  129 (269)
                      .+.+|.|+|.|.+|...++.++..|. +|++.++++++ +.++++|
T Consensus       145 ~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g  188 (333)
T 2d0i_A          145 YGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKV-NVEKELK  188 (333)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCH-HHHHHHT
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcC
Confidence            57899999999999999999999999 99999988776 4444444

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=96.16  E-value=0.012  Score=47.79  Aligned_cols=41  Identities=20%  Similarity=0.193  Sum_probs=35.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG  125 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~  125 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   68 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKV   68 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            4688999986 8999999998888899 999999998776654

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=96.16  E-value=0.015  Score=46.14  Aligned_cols=76  Identities=17%  Similarity=0.285  Sum_probs=49.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCcee-eCCCCCCCccHHHHHHhhhC-CCCccEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF-INPDDEPNKSISELVKGITH-GMGVDYC  160 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~-~~~~d~v  160 (269)
                      +++++||+|+ |.+|.+.+..+...|+ +|++++++++.    ++.+...+ .|-.+  .+.+.+.+.+... -.++|++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~----~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~g~id~l   78 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAFTQ----EQYPFATEVMDVAD--AAQVAQVCQRLLAETERLDAL   78 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCCCS----SCCSSEEEECCTTC--HHHHHHHHHHHHHHCSCCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCchhh----hcCCceEEEcCCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4688999986 8999999999988999 99999987653    22332221 23332  1223333332211 1279999


Q ss_pred             EEccCC
Q 024295          161 FECTGV  166 (269)
Q Consensus       161 ~d~~g~  166 (269)
                      ++++|.
T Consensus        79 v~~Ag~   84 (250)
T 2fwm_X           79 VNAAGI   84 (250)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999874

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.14  E-value=0.022  Score=45.96  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=29.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDK  117 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~  117 (269)
                      .++++||+|+ +++|.+.++.+...|+ +|+++++
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r   43 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDI   43 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEec
Confidence            5789999986 8999999999889999 9999987

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=96.14  E-value=0.051  Score=45.31  Aligned_cols=131  Identities=18%  Similarity=0.217  Sum_probs=79.8

Q ss_pred             eEEEEcCChhHHHHHHHHH-H-cCCCeEE-EEcCCcchHHHH-HhCCC-ceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           87 SVAVLGLGTVGLGAVDGAR-M-HGAAKII-GIDKNPWKKEKG-KAFGM-TDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~-~-~g~~~v~-~~~~~~~~~~~~-~~~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      +|.|+|+|.+|...+..++ . -+. +++ +.++++++.+.+ +++|. ..++       .++.+.+.    ...+|+|+
T Consensus         4 rigiIG~G~~g~~~~~~l~~~~~~~-~l~av~d~~~~~~~~~~~~~g~~~~~~-------~~~~~ll~----~~~~D~V~   71 (344)
T 3mz0_A            4 RIGVIGTGAIGKEHINRITNKLSGA-EIVAVTDVNQEAAQKVVEQYQLNATVY-------PNDDSLLA----DENVDAVL   71 (344)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTCSSE-EEEEEECSSHHHHHHHHHHTTCCCEEE-------SSHHHHHH----CTTCCEEE
T ss_pred             EEEEECccHHHHHHHHHHHhhCCCc-EEEEEEcCCHHHHHHHHHHhCCCCeee-------CCHHHHhc----CCCCCEEE
Confidence            6889999999987776666 4 366 555 557777766654 55773 3344       33433333    23799999


Q ss_pred             EccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceE--EeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          162 ECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTL--KGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      .|+....+.+.+..++..  |+-|++..+... ..-....+.    .++..+  .+....   ....+..+.+++.+|.+
T Consensus        72 i~tp~~~h~~~~~~al~~--Gk~vl~EKP~a~-~~~e~~~l~~~a~~~g~~~~~v~~~~r---~~p~~~~~k~~i~~g~i  145 (344)
T 3mz0_A           72 VTSWGPAHESSVLKAIKA--QKYVFCEKPLAT-TAEGCMRIVEEEIKVGKRLVQVGFMRR---YDSGYVQLKEALDNHVI  145 (344)
T ss_dssp             ECSCGGGHHHHHHHHHHT--TCEEEECSCSCS-SHHHHHHHHHHHHHHSSCCEEECCGGG---GSHHHHHHHHHHHTTTT
T ss_pred             ECCCchhHHHHHHHHHHC--CCcEEEcCCCCC-CHHHHHHHHHHHHHHCCEEEEEecccc---cCHHHHHHHHHHHcCCC
Confidence            999887777777777777  566777655321 111111122    234433  333321   22457888899999875

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.14  E-value=0.012  Score=48.04  Aligned_cols=85  Identities=15%  Similarity=0.282  Sum_probs=57.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+++|.|+|.|.+|...++.++..|. +|++.++++++.+.     .. ..       .++.+.+.      ..|+|+-+
T Consensus       121 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~-----~~-~~-------~~l~ell~------~aDiV~l~  180 (290)
T 3gvx_A          121 YGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSVDQNV-----DV-IS-------ESPADLFR------QSDFVLIA  180 (290)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSCCCTTC-----SE-EC-------SSHHHHHH------HCSEEEEC
T ss_pred             ecchheeeccCchhHHHHHHHHhhCc-EEEEEecccccccc-----cc-cc-------CChHHHhh------ccCeEEEE
Confidence            47899999999999999999999999 99999987654322     11 00       23333332      46777777


Q ss_pred             cCC-hhH----HHHHHHHcccCCcEEEEEcc
Q 024295          164 TGV-PSL----LSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       164 ~g~-~~~----~~~~~~~l~~~~G~~v~~g~  189 (269)
                      +.. +..    ....+..++++ ..++.++.
T Consensus       181 ~P~t~~t~~li~~~~l~~mk~g-ailIN~aR  210 (290)
T 3gvx_A          181 IPLTDKTRGMVNSRLLANARKN-LTIVNVAR  210 (290)
T ss_dssp             CCCCTTTTTCBSHHHHTTCCTT-CEEEECSC
T ss_pred             eeccccchhhhhHHHHhhhhcC-ceEEEeeh
Confidence            653 111    14566777775 77777764

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.14  E-value=0.026  Score=46.70  Aligned_cols=75  Identities=16%  Similarity=0.219  Sum_probs=48.3

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchH--HHHHhCCC---ceee--CCCCCCCccHHHHHHhhhCCCC
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKK--EKGKAFGM---TDFI--NPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~--~~~~~~g~---~~v~--~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      +.+|||+|+ |.+|...++.+...|+ +|+++++++++.  +.++.++.   ..++  |..+  .+.+.+.+.+.    +
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~----~   75 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLE--FSNIIRTIEKV----Q   75 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTC--HHHHHHHHHHH----C
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCcccccccHhhccccCceeEEECCCCC--HHHHHHHHHhc----C
Confidence            578999986 9999999988888898 999999887543  23444421   1122  2221  12232333222    6


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|+||++++.
T Consensus        76 ~d~vih~A~~   85 (345)
T 2z1m_A           76 PDEVYNLAAQ   85 (345)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999999874

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=96.14  E-value=0.017  Score=45.88  Aligned_cols=95  Identities=21%  Similarity=0.183  Sum_probs=63.8

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC----C-ceeeCCCCCCCccHHHHHHhhhCC
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG----M-TDFINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g----~-~~v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      ..+.++.+||-+|+|. |..+..+++. +. +|++++.+++..+.+++.-    . -.++..+-   .++     . ...
T Consensus        35 ~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~-----~-~~~  102 (263)
T 2yqz_A           35 HPKGEEPVFLELGVGT-GRIALPLIAR-GY-RYIALDADAAMLEVFRQKIAGVDRKVQVVQADA---RAI-----P-LPD  102 (263)
T ss_dssp             CCSSSCCEEEEETCTT-STTHHHHHTT-TC-EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT---TSC-----C-SCT
T ss_pred             cCCCCCCEEEEeCCcC-CHHHHHHHHC-CC-EEEEEECCHHHHHHHHHHhhccCCceEEEEccc---ccC-----C-CCC
Confidence            3567889999999876 7777777775 66 9999999998888887631    1 11221111   111     0 122


Q ss_pred             CCccEEEEccC------ChhHHHHHHHHcccCCcEEEEE
Q 024295          155 MGVDYCFECTG------VPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       155 ~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      ..||+|+-...      ....+..+.+.+++| |.++..
T Consensus       103 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg-G~l~~~  140 (263)
T 2yqz_A          103 ESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPG-GALLEG  140 (263)
T ss_dssp             TCEEEEEEESCGGGCTTHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             CCeeEEEECCchhhcCCHHHHHHHHHHHCCCC-cEEEEE
Confidence            37999986432      134678889999996 998776

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=96.13  E-value=0.021  Score=46.22  Aligned_cols=84  Identities=14%  Similarity=0.066  Sum_probs=54.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  166 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  166 (269)
                      +|.|+|+|.+|...+..+.. |. +|++.++++++.+.+.+.|... .+ .    .+       ..  ...|+|+.|+..
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~~~~~~~~~~~g~~~-~~-~----~~-------~~--~~~D~vi~~v~~   65 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRTFEKALRHQEEFGSE-AV-P----LE-------RV--AEARVIFTCLPT   65 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TS-CEEEECSSTHHHHHHHHHHCCE-EC-C----GG-------GG--GGCSEEEECCSS
T ss_pred             eEEEEcccHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHCCCcc-cC-H----HH-------HH--hCCCEEEEeCCC
Confidence            58899999999988777777 98 8999999988887776655432 11 1    11       11  157888888876


Q ss_pred             hhHHHHHHH----HcccCCcEEEEEc
Q 024295          167 PSLLSEALE----TTKVGKGKVIVIG  188 (269)
Q Consensus       167 ~~~~~~~~~----~l~~~~G~~v~~g  188 (269)
                      +..+...++    .++++ ..++.++
T Consensus        66 ~~~~~~v~~~l~~~l~~~-~~vv~~s   90 (289)
T 2cvz_A           66 TREVYEVAEALYPYLREG-TYWVDAT   90 (289)
T ss_dssp             HHHHHHHHHHHTTTCCTT-EEEEECS
T ss_pred             hHHHHHHHHHHHhhCCCC-CEEEECC
Confidence            644444443    34443 4455443

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.13  E-value=0.015  Score=46.79  Aligned_cols=80  Identities=18%  Similarity=0.236  Sum_probs=49.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC-cchHHHH----HhCCCc-eee--CCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN-PWKKEKG----KAFGMT-DFI--NPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~-~~~~~~~----~~~g~~-~v~--~~~~~~~~~~~~~i~~~~~-  153 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|++++++ ++..+.+    ++.+.. .++  |-.+  ..+..+.+.+... 
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~  104 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGYKAAVIKFDAAS--ESDFIEAIQTIVQS  104 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHh
Confidence            5789999986 8999999888888999 99999884 3333332    334432 222  2222  1223333332211 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      ..++|++++++|.
T Consensus       105 ~g~id~li~nAg~  117 (271)
T 4iin_A          105 DGGLSYLVNNAGV  117 (271)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1279999999874

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=96.12  E-value=0.018  Score=45.88  Aligned_cols=41  Identities=7%  Similarity=-0.012  Sum_probs=33.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHH---cCCCeEEEEcCCcchHHHH
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARM---HGAAKIIGIDKNPWKKEKG  125 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~---~g~~~v~~~~~~~~~~~~~  125 (269)
                      +++++||+|+ |++|.+.+..+..   .|+ +|+.+++++++.+.+
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~   49 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQL   49 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHH
Confidence            4678899986 8999998887776   799 999999988766544

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=96.12  E-value=0.034  Score=44.32  Aligned_cols=101  Identities=15%  Similarity=0.219  Sum_probs=66.7

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCC
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      +.......++.+||-+|+|. |..+..+++ .+. +|++++.+++..+.+++.....++..+-   .++     . ....
T Consensus        26 l~~~~~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~d~---~~~-----~-~~~~   93 (261)
T 3ege_A           26 IINLLNLPKGSVIADIGAGT-GGYSVALAN-QGL-FVYAVEPSIVMRQQAVVHPQVEWFTGYA---ENL-----A-LPDK   93 (261)
T ss_dssp             HHHHHCCCTTCEEEEETCTT-SHHHHHHHT-TTC-EEEEECSCHHHHHSSCCCTTEEEECCCT---TSC-----C-SCTT
T ss_pred             HHHHhCCCCCCEEEEEcCcc-cHHHHHHHh-CCC-EEEEEeCCHHHHHHHHhccCCEEEECch---hhC-----C-CCCC
Confidence            34455678899999999986 888888887 566 9999999987777665543222222211   111     0 1223


Q ss_pred             CccEEEEccC------ChhHHHHHHHHcccCCcEEEEEccC
Q 024295          156 GVDYCFECTG------VPSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       156 ~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      .||+|+-...      -...+..+.+.++ | |+++.....
T Consensus        94 ~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-g-G~~~~~~~~  132 (261)
T 3ege_A           94 SVDGVISILAIHHFSHLEKSFQEMQRIIR-D-GTIVLLTFD  132 (261)
T ss_dssp             CBSEEEEESCGGGCSSHHHHHHHHHHHBC-S-SCEEEEEEC
T ss_pred             CEeEEEEcchHhhccCHHHHHHHHHHHhC-C-cEEEEEEcC
Confidence            8999985432      1335788999999 9 987776543

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=96.12  E-value=0.014  Score=47.45  Aligned_cols=40  Identities=13%  Similarity=0.108  Sum_probs=33.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCc-chHHH
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNP-WKKEK  124 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~-~~~~~  124 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++ ++.+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~   63 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVS   63 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHH
Confidence            4688999986 8999999988888899 999999887 55543

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=96.12  E-value=0.018  Score=46.02  Aligned_cols=82  Identities=17%  Similarity=0.235  Sum_probs=51.3

Q ss_pred             CCCCCeEEEEc-C--ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCcee--eCCCCCCCccHHHHHHhhh
Q 024295           82 VEKGSSVAVLG-L--GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDF--INPDDEPNKSISELVKGIT  152 (269)
Q Consensus        82 ~~~~~~vlI~G-~--g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v--~~~~~~~~~~~~~~i~~~~  152 (269)
                      ..+++++||+| +  |++|.+.++.+...|+ +|+.++++++..+.+++    .+....  .|-.+  .++..+.+.+..
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   87 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVAD--DAQIDALFASLK   87 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTC--HHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCC--HHHHHHHHHHHH
Confidence            34689999998 4  6899999988888999 99999887654444432    342222  23322  122332333221


Q ss_pred             C-CCCccEEEEccCC
Q 024295          153 H-GMGVDYCFECTGV  166 (269)
Q Consensus       153 ~-~~~~d~v~d~~g~  166 (269)
                      . -.++|++++++|.
T Consensus        88 ~~~g~id~lv~nAg~  102 (271)
T 3ek2_A           88 THWDSLDGLVHSIGF  102 (271)
T ss_dssp             HHCSCEEEEEECCCC
T ss_pred             HHcCCCCEEEECCcc
Confidence            1 1279999998863

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.11  E-value=0.02  Score=45.83  Aligned_cols=75  Identities=12%  Similarity=0.134  Sum_probs=47.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce-eeCCCCCCCccHHHHHHhhhCC-CCccEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD-FINPDDEPNKSISELVKGITHG-MGVDYC  160 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~~-~~~d~v  160 (269)
                      +++++||+|+ |.+|.+.++.+...|+ +|+++++++++     ...... ..|-.+  .+.+.+.+.+.... .++|++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-----~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~g~iD~l   78 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHDPG-----EAKYDHIECDVTN--PDQVKASIDHIFKEYGSISVL   78 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSCCC-----SCSSEEEECCTTC--HHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCccc-----CCceEEEEecCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4688999986 8999999999888999 99999987665     111221 223322  12232223222110 179999


Q ss_pred             EEccCC
Q 024295          161 FECTGV  166 (269)
Q Consensus       161 ~d~~g~  166 (269)
                      ++++|.
T Consensus        79 v~~Ag~   84 (264)
T 2dtx_A           79 VNNAGI   84 (264)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999873

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=96.11  E-value=0.071  Score=44.24  Aligned_cols=132  Identities=16%  Similarity=0.083  Sum_probs=75.9

Q ss_pred             eEEEEcCChhHH-HHHHHHHHcCCCeEE-EEcCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           87 SVAVLGLGTVGL-GAVDGARMHGAAKII-GIDKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        87 ~vlI~G~g~~G~-~a~~la~~~g~~~v~-~~~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      +|.|+|+|.+|. ..+..++..++ +++ +.++++++.+. +++++...++       .++.+.+    ....+|+|+-|
T Consensus         6 rvgiiG~G~~~~~~~~~~l~~~~~-~lvav~d~~~~~~~~~a~~~~~~~~~-------~~~~~ll----~~~~~D~V~i~   73 (336)
T 2p2s_A            6 RFAAIGLAHNHIYDMCQQLIDAGA-ELAGVFESDSDNRAKFTSLFPSVPFA-------ASAEQLI----TDASIDLIACA   73 (336)
T ss_dssp             EEEEECCSSTHHHHHHHHHHHTTC-EEEEEECSCTTSCHHHHHHSTTCCBC-------SCHHHHH----TCTTCCEEEEC
T ss_pred             EEEEECCChHHHHHhhhhhcCCCc-EEEEEeCCCHHHHHHHHHhcCCCccc-------CCHHHHh----hCCCCCEEEEe
Confidence            688999987775 33344445677 654 55677766655 4556422222       3343333    23479999999


Q ss_pred             cCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCc-HHHHHHHHHCCCC
Q 024295          164 TGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSD-LPTLLDKCKNKEF  235 (269)
Q Consensus       164 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~g~~  235 (269)
                      +....+.+.+...++.  |+-|++..+..... -....+.    .++..+.-.....  .... +..+.+++.+|.+
T Consensus        74 tp~~~h~~~~~~al~a--GkhVl~EKP~a~~~-~e~~~l~~~a~~~g~~~~v~~~~R--~~p~~~~~~~~~i~~g~i  145 (336)
T 2p2s_A           74 VIPCDRAELALRTLDA--GKDFFTAKPPLTTL-EQLDAVQRRVAETGRKFAVYFNER--INVDSALFAGELVQRGEI  145 (336)
T ss_dssp             SCGGGHHHHHHHHHHT--TCEEEECSSCCSCH-HHHHHHHHHHHHHCCCEEECCTTT--TTCHHHHHHHHHHHTTTT
T ss_pred             CChhhHHHHHHHHHHC--CCcEEEeCCCCCCH-HHHHHHHHHHHHcCCEEEEeeccc--cCcHHHHHHHHHHhCCCC
Confidence            9887788888888877  56667765432111 1111222    2344333221111  1234 7888899998875

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=96.11  E-value=0.014  Score=47.09  Aligned_cols=78  Identities=10%  Similarity=0.081  Sum_probs=50.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CC---Ccee--eCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FG---MTDF--INPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g---~~~v--~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      +++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+ +.   ....  .|-.+  .+...+.+.+... -.++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i   98 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALAGELSAKTRVLPLTLDVRD--RAAMSAAVDNLPEEFATL   98 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTC--HHHHHHHHHTCCGGGSSC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHhCCC
Confidence            68899986 8999999998888999 99999998877665432 32   1112  23322  1223333333211 1278


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus        99 D~lvnnAG~  107 (272)
T 2nwq_A           99 RGLINNAGL  107 (272)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999863

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.10  E-value=0.013  Score=48.53  Aligned_cols=42  Identities=31%  Similarity=0.317  Sum_probs=35.2

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 024295           83 EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG  125 (269)
Q Consensus        83 ~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~  125 (269)
                      .++.+|||+|+ |.+|...+..+...|+ +|++++++.++.+.+
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~   51 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANL   51 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCcccHHHH
Confidence            35789999986 9999999988888899 999999987765544

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.10  E-value=0.021  Score=46.20  Aligned_cols=80  Identities=18%  Similarity=0.210  Sum_probs=49.7

Q ss_pred             CCCeEEEEcC-Ch--hHHHHHHHHHHcCCCeEEEEcCCc--chHHHHHh-CCCcee--eCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GT--VGLGAVDGARMHGAAKIIGIDKNP--WKKEKGKA-FGMTDF--INPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~--~G~~a~~la~~~g~~~v~~~~~~~--~~~~~~~~-~g~~~v--~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      +++++||+|+ |.  +|.+.++.+...|+ +|+.++++.  +..+.+.+ .+....  .|-.+  .++..+.+.+... -
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~  101 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVIS--DQEIKDLFVELGKVW  101 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTTCHHHHHHHHGGGCCSEEEECCTTC--HHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCchHHHHHHHHHHhcCCceEEEeecCC--HHHHHHHHHHHHHHc
Confidence            5789999984 44  99999888888899 999999887  44444433 332222  23322  1223332332211 1


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      .++|++++++|.
T Consensus       102 g~id~li~nAg~  113 (280)
T 3nrc_A          102 DGLDAIVHSIAF  113 (280)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            279999999873

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.10  E-value=0.024  Score=43.12  Aligned_cols=62  Identities=21%  Similarity=0.357  Sum_probs=42.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      ++||+|+ |.+|...++.+. .|+ +|++++++++          ....|-.+  ++.+.+.+.+.  + ++|++++++|
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~-~V~~~~r~~~----------~~~~D~~~--~~~~~~~~~~~--~-~~d~vi~~ag   67 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKA-EVITAGRHSG----------DVTVDITN--IDSIKKMYEQV--G-KVDAIVSATG   67 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTS-EEEEEESSSS----------SEECCTTC--HHHHHHHHHHH--C-CEEEEEECCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCC-eEEEEecCcc----------ceeeecCC--HHHHHHHHHHh--C-CCCEEEECCC
Confidence            6999986 999999988888 899 9999998754          12223332  12233333333  2 6899999887

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.09  E-value=0.035  Score=44.20  Aligned_cols=85  Identities=14%  Similarity=0.259  Sum_probs=59.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      -+|.|+|+|.+|...+..+...|. .|.+.++++++.+.+.+ +|...   .     .+..+.+.      ..|+|+.|+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~g~~~---~-----~~~~~~~~------~~D~Vi~~v   68 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALPY---A-----MSHQDLID------QVDLVILGI   68 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCCB---C-----SSHHHHHH------TCSEEEECS
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHHcCCEe---e-----CCHHHHHh------cCCEEEEEe
Confidence            368999999999988887777786 89999999888776654 56431   1     22333332      579999999


Q ss_pred             CChhHHHHHHHHcccCCcEEEEE
Q 024295          165 GVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       165 g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      . +......+..++++ ..++..
T Consensus        69 ~-~~~~~~v~~~l~~~-~~vv~~   89 (259)
T 2ahr_A           69 K-PQLFETVLKPLHFK-QPIISM   89 (259)
T ss_dssp             C-GGGHHHHHTTSCCC-SCEEEC
T ss_pred             C-cHhHHHHHHHhccC-CEEEEe
Confidence            8 44667777777764 555544

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.09  E-value=0.024  Score=47.32  Aligned_cols=75  Identities=23%  Similarity=0.296  Sum_probs=50.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHh-CC---Ccee-eCCCCCCCccHHHHHHhhhCCCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKA-FG---MTDF-INPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~-~g---~~~v-~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      ++++|||+|+ |.+|...++.+... |..+|+++++++++.+.+.+ +.   ...+ .|-.+   .+   .+.+...  +
T Consensus        20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~---~l~~~~~--~   91 (344)
T 2gn4_A           20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRD---LE---RLNYALE--G   91 (344)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTC---HH---HHHHHTT--T
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCC---HH---HHHHHHh--c
Confidence            5789999986 99999998877777 86689999998877665433 32   2222 23322   22   2333332  7


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|+||.+++.
T Consensus        92 ~D~Vih~Aa~  101 (344)
T 2gn4_A           92 VDICIHAAAL  101 (344)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.09  E-value=0.021  Score=47.32  Aligned_cols=71  Identities=20%  Similarity=0.196  Sum_probs=46.8

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      +|||+|+ |.+|...++.+...|+ +|+++++++++.+.+...+...+. |..+   .   +.+.+...  ++|+||+++
T Consensus        15 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d---~---~~~~~~~~--~~d~vih~a   85 (342)
T 2x4g_A           15 KYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQIQRLAYLEPECRVAEMLD---H---AGLERALR--GLDGVIFSA   85 (342)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSCGGGGGGGCCEEEECCTTC---H---HHHHHHTT--TCSEEEEC-
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHhhhhhccCCeEEEEecCCC---H---HHHHHHHc--CCCEEEECC
Confidence            7999986 9999999998888898 999999987765544433443322 2222   2   22333332  699999998


Q ss_pred             CC
Q 024295          165 GV  166 (269)
Q Consensus       165 g~  166 (269)
                      +.
T Consensus        86 ~~   87 (342)
T 2x4g_A           86 GY   87 (342)
T ss_dssp             --
T ss_pred             cc
Confidence            64

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=96.09  E-value=0.015  Score=48.07  Aligned_cols=130  Identities=12%  Similarity=0.066  Sum_probs=75.0

Q ss_pred             eEEEEcCChhHH-HHHHHHHHc-CCCeEEEEcCCcchHHHH-HhCCCce-eeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           87 SVAVLGLGTVGL-GAVDGARMH-GAAKIIGIDKNPWKKEKG-KAFGMTD-FINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        87 ~vlI~G~g~~G~-~a~~la~~~-g~~~v~~~~~~~~~~~~~-~~~g~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      +|.|+|+|.+|. ..+..++.. +. ++++.++++++.+.+ +++|... ..++.        +.+    . ..+|+|+.
T Consensus         4 ~igiIG~G~ig~~~~~~~l~~~~~~-~l~v~d~~~~~~~~~a~~~g~~~~~~~~~--------~~l----~-~~~D~V~i   69 (323)
T 1xea_A            4 KIAMIGLGDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGTLATRYRVSATCTDYR--------DVL----Q-YGVDAVMI   69 (323)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHHHHHHTTCCCCCSSTT--------GGG----G-GCCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHHHcCCCccccCHH--------HHh----h-cCCCEEEE
Confidence            588999999997 355555443 66 566778888777654 5577543 22211        112    1 27999999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhh----hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALA----CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      ++....+.+.+...++.  |+-|++..+.... .-....+.    .++..+.-.....  ....+..+.+++.+|.+
T Consensus        70 ~tp~~~h~~~~~~al~~--Gk~V~~EKP~~~~-~~~~~~l~~~a~~~g~~~~v~~~~r--~~p~~~~~~~~i~~g~i  141 (323)
T 1xea_A           70 HAATDVHSTLAAFFLHL--GIPTFVDKPLAAS-AQECENLYELAEKHHQPLYVGFNRR--HIPLYNQHLSELAQQEC  141 (323)
T ss_dssp             CSCGGGHHHHHHHHHHT--TCCEEEESCSCSS-HHHHHHHHHHHHHTTCCEEEECGGG--CCHHHHHHCHHHHHTSC
T ss_pred             ECCchhHHHHHHHHHHC--CCeEEEeCCCcCC-HHHHHHHHHHHHhcCCeEEEeeccc--cCHHHHHHHHHHhcCCc
Confidence            99877677777777776  5555565433211 11111121    2344443222111  22357778888888775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	3e-34
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	3e-34
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	3e-31
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	3e-30
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	3e-29
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	2e-26
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	3e-24
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	9e-21
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	5e-18
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	9e-16
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	8e-15
d1uufa2	168	c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc	2e-13
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	2e-13
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	3e-13
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	9e-11
d1llua2	166	c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudom	1e-10
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	3e-10
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	4e-10
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	8e-10
d1rjwa2	168	c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillu	1e-08
d1pqwa_	183	c.2.1.1 (A:) Putative enoyl reductase domain of po	9e-08
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	9e-08
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	2e-07
d1jvba2	170	c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeo	3e-07
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	8e-07
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	4e-05
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	3e-04
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	6e-04
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	0.002

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  119 bits (300), Expect = 3e-34
 Identities = 68/178 (38%), Positives = 92/178 (51%), Gaps = 2/178 (1%)

Query: 56  SIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI 115
           +  P     + CGF+TGYGAA K  KV+ GS+  V GLG VGL  + G +  GA++IIGI
Sbjct: 1   AAPPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGI 60

Query: 116 DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE 175
           D N  K EK  A G T+ I+P D         V     G  V Y FE  G    + +AL 
Sbjct: 61  DLNKDKFEKAMAVGATECISPKDSTK--PISEVLSEMTGNNVGYTFEVIGHLETMIDALA 118

Query: 176 TTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNK 233
           +  +  G  +V+GV   A +      L   GRT KG  FGG+K++ D+P L+ +   K
Sbjct: 119 SCHMNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAK 176

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score =  119 bits (300), Expect = 3e-34
 Identities = 70/177 (39%), Positives = 103/177 (58%), Gaps = 5/177 (2%)

Query: 59  PSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN 118
           P ++  + CGF TGYGAA   AKV  GS+ AV GLG VG  A+ G +  GA++IIG+  +
Sbjct: 2   PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH 61

Query: 119 PWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTK 178
             K  K    G T+ +NP D  +K I E++   T+G GVDY  EC G    +  AL++T 
Sbjct: 62  KDKFPKAIELGATECLNPKDY-DKPIYEVICEKTNG-GVDYAVECAGRIETMMNALQSTY 119

Query: 179 VGKGKVIVIGVGV-DAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKE 234
            G G  +V+G+   +  +PL+ + L   GR+LKG+ FGG K + ++  L+D    K+
Sbjct: 120 CGSGVTVVLGLASPNERLPLDPLLLL-TGRSLKGSVFGGFKGE-EVSRLVDDYMKKK 174

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score =  111 bits (279), Expect = 3e-31
 Identities = 69/177 (38%), Positives = 93/177 (52%), Gaps = 4/177 (2%)

Query: 58  DPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDK 117
           +      + CGF++GYGAA   AKV  GS+ AV GLG VGL A+ G ++ GA++II ID 
Sbjct: 2   NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI 61

Query: 118 NPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETT 177
           N  K  K KA G TD +NP +                 GVDY  +C G    L  A++ T
Sbjct: 62  NGEKFPKAKALGATDCLNPRELDKPVQDV--ITELTAGGVDYSLDCAGTAQTLKAAVDCT 119

Query: 178 KVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKE 234
            +G G   V+G  VD M    V  +   GR++ GT FGG K+   +P L+   KNK+
Sbjct: 120 VLGWGSCTVVGAKVDEMTIPTVDVIL--GRSINGTFFGGWKSVDSVPNLVSDYKNKK 174

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  109 bits (273), Expect = 3e-30
 Identities = 69/173 (39%), Positives = 96/173 (55%), Gaps = 2/173 (1%)

Query: 62  ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK 121
              + CGF+TGYG+A K AKV +GS+ AV GLG VGL  + G +  GAA+IIG+D N  K
Sbjct: 6   VCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDK 65

Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK 181
             K K  G T+ +NP D   K I E++  +++G GVD+ FE  G    +  AL   +   
Sbjct: 66  FAKAKEVGATECVNPQDYK-KPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAY 123

Query: 182 GKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKE 234
           G  +++GV  D+        L   GRT KG  FGG K+K  +P L+     K+
Sbjct: 124 GVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKK 176

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  106 bits (266), Expect = 3e-29
 Identities = 69/173 (39%), Positives = 91/173 (52%), Gaps = 2/173 (1%)

Query: 62  ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK 121
              L CG +TGYGAA   AK+E GS  AV GLG VGL  + G ++ GA++IIG+D N  K
Sbjct: 6   VCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK 65

Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK 181
             + K FG T+ INP D        L++      GVDY FEC G   ++  ALE    G 
Sbjct: 66  FARAKEFGATECINPQDFSKPIQEVLIE--MTDGGVDYSFECIGNVKVMRAALEACHKGW 123

Query: 182 GKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKE 234
           G  +V+GV                GRT KGT FGG K+   +P L+ +  +K+
Sbjct: 124 GVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKK 176

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 99.6 bits (247), Expect = 2e-26
 Identities = 54/173 (31%), Positives = 78/173 (45%), Gaps = 6/173 (3%)

Query: 57  IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID 116
           +       L CG  TG GA     KV   SS    G G VGL A+  A++ GA+ II +D
Sbjct: 1   VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVD 60

Query: 117 KNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALET 176
               + E  K  G T  IN   +        +K IT G GV++  E TG P +L + ++ 
Sbjct: 61  IVESRLELAKQLGATHVINSKTQ---DPVAAIKEITDG-GVNFALESTGSPEILKQGVDA 116

Query: 177 TKVGKGKVIVIGVG-VDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLD 228
             +  GK+ V+G   +      +V  L  GG+T+ G   G    K  +P L+ 
Sbjct: 117 LGI-LGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVR 168

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 93.9 bits (232), Expect = 3e-24
 Identities = 72/173 (41%), Positives = 93/173 (53%), Gaps = 3/173 (1%)

Query: 62  ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK 121
              L CG +TG+GAA   AKVE GS+ AV GLG VGL AV G    GA +II +D NP K
Sbjct: 6   VCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK 65

Query: 122 KEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGK 181
            EK K FG TDF+NP+D        L K    G+  D+  EC G   ++  ALE+   G 
Sbjct: 66  FEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGV--DFSLECVGNVGVMRNALESCLKGW 123

Query: 182 GKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKE 234
           G  +++G      V    I L   GRT KG+ FGG K K  +P ++    +K+
Sbjct: 124 GVSVLVGWTDLHDVATRPIQLI-AGRTWKGSMFGGFKGKDGVPKMVKAYLDKK 175

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 84.6 bits (208), Expect = 9e-21
 Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 8/170 (4%)

Query: 61  DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW 120
           +A  ++   TTG+  A + A +E GSSV V+G+G VGL  + GA++ GA +IIG+   P 
Sbjct: 5   NAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPI 63

Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVG 180
             E  K +G TD +N  +   +   + V  +T+G GVD      G    LS+A++  K G
Sbjct: 64  CVEAAKFYGATDILNYKNGHIE---DQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPG 120

Query: 181 KGKVIVIGV-GVDAMVPLNVIALACG--GRTLKGTTFGGIKTKSDLPTLL 227
            G +  I   G    + +  +   CG   +T+KG    G + +++    +
Sbjct: 121 -GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRAERLRDM 169

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 77.6 bits (190), Expect = 5e-18
 Identities = 51/193 (26%), Positives = 76/193 (39%), Gaps = 29/193 (15%)

Query: 61  DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW 120
           D + LS    TGY  A   A V  GS+V V G G VGL A   AR+ GAA +I  D NP 
Sbjct: 3   DLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA 61

Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV-------------- 166
           +    KA G        D P   + E +  +     VD   +  G               
Sbjct: 62  RLAHAKAQGFEIADLSLDTP---LHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEA 118

Query: 167 -PSLLSEALETTKVGKGKVIVIGV-------GVDAMVPLNVIALACGGRTLKGTTFGGIK 218
             ++L+  ++ T+V  GK+ + G+        VDA   +  +++  G    K  +F   +
Sbjct: 119 PATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQ 177

Query: 219 T--KSDLPTLLDK 229
           T        L+  
Sbjct: 178 TPVMKYNRALMQA 190

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 71.5 bits (174), Expect = 9e-16
 Identities = 45/174 (25%), Positives = 66/174 (37%), Gaps = 3/174 (1%)

Query: 58  DPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDK 117
           D    +   C   T Y A  +  +   G +V + G G +GL  V  AR  GA  +I I  
Sbjct: 2   DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAG 61

Query: 118 NPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETT 177
           +P + +  +  G    +N  +   +   + +  ITHG G D+  E TG    L E  E  
Sbjct: 62  SPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELL 121

Query: 178 KVGKGKVIVIGVGV-DAMVPLNVIALACG-GRTLKGTTFGGIKTKSDLPTLLDK 229
           + G G   V GV V    VP  V         T KG             ++  +
Sbjct: 122 RRG-GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSR 174

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 68.4 bits (166), Expect = 8e-15
 Identities = 35/169 (20%), Positives = 71/169 (42%), Gaps = 11/169 (6%)

Query: 61  DASFLSCGFTTGYGAAWKEAK-VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP 119
           + + L+    T Y A  K A+ +  G+ VA++G+G +G  AV   ++   A +I +D   
Sbjct: 8   EMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE 67

Query: 120 WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKV 179
            K +  +  G    ++   +P     + V  +T G GV+   +  G  + +         
Sbjct: 68  EKLKLAERLGADHVVDARRDP----VKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGR 123

Query: 180 GKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLD 228
             G++I++G G +   P   +       + +G+  G      +L  L+ 
Sbjct: 124 M-GRLIIVGYGGELRFPTIRVIS--SEVSFEGSLVGNYV---ELHELVT 166

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 65.0 bits (157), Expect = 2e-13
 Identities = 35/179 (19%), Positives = 58/179 (32%), Gaps = 14/179 (7%)

Query: 55  PSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIG 114
           P    +  + L C   T Y    +  +   G  V V+G+G +G            A ++ 
Sbjct: 2   PQEQLAAVAPLLCAGITTYSP-LRHWQAGPGKKVGVVGIGGLG-HMGIKLAHAMGAHVVA 59

Query: 115 IDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEAL 174
              +  K+E  KA G  + +N  +              H    D+       P  L +  
Sbjct: 60  FTTSEAKREAAKALGADEVVNSRNADEM--------AAHLKSFDFILNTVAAPHNLDDFT 111

Query: 175 ETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNK 233
              K   G + ++G          V  L    R + G+  GGI    +   +LD C   
Sbjct: 112 TLLKRD-GTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIP---ETQEMLDFCAEH 166

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 2e-13
 Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 8/148 (5%)

Query: 65  LSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEK 124
           LS G       A +   V  G  V V G G +G+  +  A+  GAA+++  D +  +  K
Sbjct: 12  LSVGI-----HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSK 66

Query: 125 GKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKV 184
            K  G    +    E  + I+  V+    G   +   ECTG  + +   +  T+ G   V
Sbjct: 67  AKEIGADLVLQISKESPQEIARKVE-GQLGCKPEVTIECTGAEASIQAGIYATRSGGTLV 125

Query: 185 IVIGVGVDAMVPLNVIALACGGRTLKGT 212
           +V        VPL   A+      +KG 
Sbjct: 126 LVGLGSEMTTVPLLHAAI--REVDIKGV 151

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 64.9 bits (157), Expect = 3e-13
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 1/92 (1%)

Query: 1   MTNLCLKY-PIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDP 59
            TN C+K        +M    +R + +G+K+      ST+S+Y V++   V K+DPS+  
Sbjct: 108 KTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKL 167

Query: 60  SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVL 91
            +         +   A       +   +V  L
Sbjct: 168 DEFITHRMPLESVNDAIDLMKHGKCIRTVLSL 199

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 57.6 bits (138), Expect = 9e-11
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 16  MLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGA 75
           M D TSR + RG+ +Y++   ST++EY V+    V K+DP I+ +               
Sbjct: 123 MADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTL------ 176

Query: 76  AWKEAKVEKGSSVAVLGLGTVGL 98
                ++ K   +   G G   +
Sbjct: 177 ----DQINKAFELLSSGQGVRSI 195

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 56.6 bits (135), Expect = 1e-10
 Identities = 37/172 (21%), Positives = 60/172 (34%), Gaps = 12/172 (6%)

Query: 57  IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID 116
           ++ ++ + + C   T Y    K+     G  VA+ G+G +G  AV  AR  G   +  ID
Sbjct: 1   VEFAEIAPILCAGVTVYK-GLKQTNARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAID 58

Query: 117 KNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALET 176
            +  K E  +  G +  +N   E                G           S   +A+  
Sbjct: 59  IDDAKLELARKLGASLTVNARQEDPV-----EAIQRDIGGAHGVLVTAVSNSAFGQAIGM 113

Query: 177 TKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLD 228
            + G    +V     D   P+  + L   G  + G+  G      DL   LD
Sbjct: 114 ARRGGTIALVGLPPGDFPTPIFDVVL--KGLHIAGSIVGTRA---DLQEALD 160

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 3e-10
 Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 1/92 (1%)

Query: 1   MTNLCLKYPIALN-GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDP 59
            TNLC K  +    GLM D TSR + +G+ + H    ST+SEY V+    V K+DP I  
Sbjct: 106 KTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKV 165

Query: 60  SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVL 91
            +    +  F     A       +   +V  +
Sbjct: 166 DEFVTHNLSFDEINKAFELMHSGKSIRTVVKI 197

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 55.7 bits (133), Expect = 4e-10
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 8/97 (8%)

Query: 1   MTNLCLK-----YPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDP 55
           +TNLC K     YP     LM D TSR + +G+ +YH    S++S+Y V+    + +VD 
Sbjct: 107 LTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDD 166

Query: 56  SIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG 92
             D       +  F +   A      +++G S+  + 
Sbjct: 167 EFDLDLLVTHALPFESINDAI---DLMKEGKSIRTIL 200

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 54.9 bits (131), Expect = 8e-10
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 1   MTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDP 59
             N CLK  +++  G M D TSR + RG+ ++H    ST+S+Y V+D   V K+D +   
Sbjct: 107 EGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAF-- 164

Query: 60  SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG 92
           +    ++               +  G S+  + 
Sbjct: 165 ALDPLITHVLPFEKINEG-FDLLRSGESIRTIL 196

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 50.9 bits (120), Expect = 1e-08
 Identities = 40/180 (22%), Positives = 63/180 (35%), Gaps = 12/180 (6%)

Query: 57  IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID 116
           +   +A+ + C   T Y  A K    + G  VA+ G+G +G  AV  A+  G   ++ +D
Sbjct: 1   LSFEEAAPIFCAGVTTYK-ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVD 58

Query: 117 KNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALET 176
               K E  K  G    +NP  E                GV               A  +
Sbjct: 59  IGDEKLELAKELGADLVVNPLKEDAAKFM-----KEKVGGVHAAVVTAVSKPAFQSAYNS 113

Query: 177 TKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFK 236
            + G   V+V     +  +P+    L   G  + G+  G   T+ DL   L      + K
Sbjct: 114 IRRGGACVLVGLPPEEMPIPIFDTVL--NGIKIIGSIVG---TRKDLQEALQFAAEGKVK 168

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 48.9 bits (115), Expect = 9e-08
 Identities = 24/184 (13%), Positives = 56/184 (30%), Gaps = 11/184 (5%)

Query: 61  DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW 120
           +A+     + T + +  +  ++  G  V +         A         A+I     +  
Sbjct: 2   EAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA 61

Query: 121 KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVG 180
           K+E     G+    +         ++ +  +T G GVD           +   ++    G
Sbjct: 62  KREMLSRLGVEYVGDSRSV---DFADEILELTDGYGVDVVLNSLA-GEAIQRGVQILAPG 117

Query: 181 KGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI------KTKSDLPTLLDKCKNKE 234
              + +    V A   L + ALA    +               + +  L  +L    + +
Sbjct: 118 GRFIELGKKDVYADASLGLAALA-KSASFSVVDLDLNLKLQPARYRQLLQHILQHVADGK 176

Query: 235 FKLH 238
            ++ 
Sbjct: 177 LEVL 180

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 49.1 bits (116), Expect = 9e-08
 Identities = 8/76 (10%), Positives = 21/76 (27%), Gaps = 7/76 (9%)

Query: 36  CSTWSEYMVIDAN--YVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL 93
               +EY+++      ++K+       +   ++        +    A    G        
Sbjct: 131 TGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISLDD-APRGYG----EFDA 185

Query: 94  GTVGLGAVDGARMHGA 109
           G      +D  +   A
Sbjct: 186 GVPKKFVIDPHKTFSA 201

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 1/60 (1%)

Query: 31  YHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAV 90
               S   ++ Y+ +  ++VV +  +I          G    +    ++  V    ++  
Sbjct: 127 DGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAF-ERMEKGDVRYRFTLVG 185

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 47.0 bits (110), Expect = 3e-07
 Identities = 23/173 (13%), Positives = 53/173 (30%), Gaps = 10/173 (5%)

Query: 57  IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID 116
           ++  +A+ L+C   T Y A  ++A ++   ++ V+G G              +   I   
Sbjct: 1   LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGV 59

Query: 117 KNPWKKEKG-KAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALE 175
               +  +  K  G    IN   +   +     +                  S  + ++ 
Sbjct: 60  DVREEAVEAAKRAGADYVINASMQDPLA-----EIRRITESKGVDAVIDLNNSEKTLSVY 114

Query: 176 TTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLD 228
              + K    V+     A +  +   +        G+  G    +SD   ++ 
Sbjct: 115 PKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVG---NQSDFLGIMR 164

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 46.1 bits (108), Expect = 8e-07
 Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 28/118 (23%)

Query: 1   MTNLCLKY-PIALNGLMLDSTSRMSVRGQKLY--HIFSCSTWSEYMVIDANYVVKVDPSI 57
               C ++     +G   +    +    Q +   H F+ S+++ Y +   N  VKV    
Sbjct: 101 NPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDF 160

Query: 58  DPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI 115
                                         V       +   A+D  +      II I
Sbjct: 161 PFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIKI 193

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 31  YHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAV 90
                    + Y V  A++  K+  + +       S         A++ A+ +  +++ V
Sbjct: 114 ATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVD-AFEAARKKADNTIKV 172

Query: 91  LG 92
           + 
Sbjct: 173 MI 174

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 7/59 (11%)

Query: 34  FSCSTWSEYMVIDANYVVKVDPSIDPSDASF--LSCGFTTGYGAAWKEAKVEKGSSVAV 90
                   +   +A +  K+  ++ P       L          A++  K   G  + +
Sbjct: 123 PDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRFPLEKALE-----AFETFKKGLGLKIML 176

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 37.6 bits (86), Expect = 6e-04
 Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 2/61 (3%)

Query: 31  YHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAV 90
                   ++EY++ D NYV  +  ++  +                   A   +G  V  
Sbjct: 117 TGYSVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDINQILDQM--RAGQIEGRIVLE 174

Query: 91  L 91
           +
Sbjct: 175 M 175

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 11/90 (12%), Positives = 26/90 (28%), Gaps = 13/90 (14%)

Query: 1   MTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS 60
           + N C       N    D                +   +S+ +V+   YV+++  +    
Sbjct: 101 LENYCDHMTGTYNSPTPDEPG------------HTLGGYSQQIVVHERYVLRIRVADIEM 148

Query: 61  D-ASFLSCGFTTGYGAAWKEAKVEKGSSVA 89
             A  ++  +        K   V    ++ 
Sbjct: 149 IRADQINEAYERMLRGDVKYRFVIDNRTLT 178

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	100.0
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.97
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.97
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.97
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.96
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.96
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.96
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.96
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.96
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.96
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.96
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.96
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.96
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.96
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.96
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.96
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.95
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.95
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.95
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.95
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.95
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.94
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.94
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.94
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.93
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.92
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.9
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.9
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.53
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.32
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.3
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.25
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.24
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.14
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.13
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.08
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	98.95
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	98.9
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	98.89
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	98.88
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	98.86
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	98.79
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	98.72
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	98.63
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	98.62
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	98.58
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	98.57
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.38
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.35
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.31
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	98.29
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	98.27
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	98.23
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.21
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	98.17
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	98.14
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	98.09
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	98.07
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	98.05
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.99
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.95
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.93
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.91
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.89
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.87
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.84
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.74
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.72
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.7
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.68
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.68
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.66
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.65
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.64
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.63
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.62
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.57
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.55
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	97.55
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.55
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.53
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	97.51
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.5
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.49
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.49
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.47
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.46
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	97.44
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.44
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.39
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.38
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.37
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.37
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.36
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.36
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	97.35
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.33
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.32
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.31
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.3
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.29
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	97.27
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.26
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.25
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.24
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	97.24
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.23
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.23
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	97.22
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.22
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.21
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.19
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.19
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.19
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.18
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	97.15
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.14
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.12
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.11
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.11
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.1
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.08
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.08
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.08
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.06
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	97.02
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.01
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.99
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.98
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.98
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.96
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.96
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.96
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	96.92
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.91
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	96.91
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.9
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.89
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	96.88
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.88
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.85
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.82
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.81
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	96.8
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	96.78
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.77
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.77
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.77
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	96.77
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.76
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.74
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.74
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	96.74
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	96.71
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.7
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	96.67
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.62
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	96.61
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.6
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.58
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.52
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	96.51
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	96.51
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	96.5
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.43
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.42
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	96.36
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	96.35
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.33
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.33
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	96.32
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	96.31
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.27
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.26
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.25
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	96.24
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.22
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	96.22
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	96.21
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	96.21
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.19
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.16
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	96.16
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	96.15
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.14
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.12
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.1
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	96.05
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.03
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.94
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.88
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.87
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	95.87
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.87
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	95.83
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	95.83
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.81
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	95.79
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.74
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	95.74
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	95.72
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	95.71
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	95.71
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.7
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	95.68
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	95.66
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.6
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.58
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	95.55
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.52
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	95.48
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	95.45
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	95.45
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	95.44
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.44
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	95.43
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.4
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	95.39
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.39
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.39
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.37
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.36
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	95.35
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.31
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	95.29
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.29
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	95.28
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	95.25
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.23
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.22
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.22
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.22
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	95.22
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.01
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.97
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	94.96
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.95
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	94.95
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	94.92
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	94.85
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.82
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	94.81
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	94.81
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.8
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.74
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	94.68
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	94.65
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.62
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.56
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	94.52
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.51
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	94.49
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	94.49
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.49
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	94.47
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	94.45
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	94.44
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	94.41
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.38
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	94.34
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	94.32
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	94.31
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	94.31
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	94.29
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	94.27
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	94.27
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.23
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	94.21
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.16
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.15
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	94.14
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	94.07
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	94.06
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.05
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	94.02
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.96
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	93.95
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.93
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.91
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	93.9
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	93.9
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	93.81
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.79
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	93.74
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	93.73
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	93.7
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.67
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	93.57
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	93.52
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	93.49
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.49
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	93.45
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.41
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	93.4
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	93.38
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	93.37
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.32
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	93.21
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.18
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.16
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	92.96
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.94
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	92.91
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	92.9
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	92.89
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	92.78
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	92.77
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	92.74
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	92.64
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	92.59
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	92.59
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.52
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.52
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	92.51
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	92.5
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.5
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	92.49
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	92.47
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	92.29
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	92.27
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	92.17
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	92.04
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	91.96
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	91.86
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.85
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.82
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	91.72
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	91.63
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	91.63
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	91.63
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	91.58
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	91.52
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	91.43
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	91.37
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	91.37
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	91.33
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	91.33
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	91.2
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	91.18
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	91.16
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	91.15
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	91.1
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	91.09
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	90.95
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.89
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	90.82
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	90.76
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.6
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.56
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	90.47
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	90.37
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.34
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	90.26
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	90.22
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	90.19
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	90.12
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	90.1
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	90.06
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	89.95
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	89.91
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.85
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	89.84
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	89.83
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	89.83
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	89.81
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	89.76
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	89.76
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	89.73
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	89.57
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	89.55
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	89.55
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	89.45
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	89.24
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	89.23
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	89.12
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	88.99
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	88.64
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	88.2
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	88.1
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	87.89
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	87.81
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	87.75
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	87.75
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	87.71
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	87.5
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	87.4
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	87.36
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	87.26
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	87.26
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	87.17
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	86.98
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	86.96
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	86.92
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	86.84
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	86.78
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	86.72
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	86.59
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	86.57
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	86.56
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	86.52
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	86.11
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	86.04
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	85.93
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.87
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	85.79
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	85.78
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	85.73
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	85.31
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	85.22
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	85.13
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	85.09
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.06
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	84.77
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	84.72
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	84.43
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	84.3
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	84.3
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	83.99
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	83.89
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	83.63
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	83.34
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.22
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	83.2
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	82.76
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	82.2
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	82.0
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	81.97
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	81.25
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	80.76
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	80.69
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	80.63
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	80.51

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=100.00  E-value=4.4e-32  Score=206.63  Aligned_cols=173  Identities=31%  Similarity=0.469  Sum_probs=159.2

Q ss_pred             CCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCC
Q 024295           57 IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINP  136 (269)
Q Consensus        57 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~  136 (269)
                      ++++.+++++|.+.|||+++.+.++++++++|+|+|+|++|++++|+++..|+++|++++++++|++.++++|+++++|+
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~   80 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINS   80 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEET
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeC
Confidence            35678999999999999999999999999999999999999999999999999888899999999999999999999999


Q ss_pred             CCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeecc
Q 024295          137 DDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFG  215 (269)
Q Consensus       137 ~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~  215 (269)
                      ++   +++.+++++.+++ ++|++|||+|++..++.++++++++ |+++.+|.+.. ...+++...++++++++.|++++
T Consensus        81 ~~---~~~~~~i~~~t~g-g~D~vid~~G~~~~~~~~~~~~~~~-G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g  155 (174)
T d1f8fa2          81 KT---QDPVAAIKEITDG-GVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEG  155 (174)
T ss_dssp             TT---SCHHHHHHHHTTS-CEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGG
T ss_pred             CC---cCHHHHHHHHcCC-CCcEEEEcCCcHHHHHHHHhcccCc-eEEEEEeecCCCcccccCHHHHHHCCCEEEEEEec
Confidence            87   8899999999988 9999999999988899999999996 99999997654 56788888999999999999888


Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 024295          216 GIKTKSDLPTLLDKCKNKE  234 (269)
Q Consensus       216 ~~~~~~~~~~~~~l~~~g~  234 (269)
                      .+..+++++++++|+++||
T Consensus       156 ~~~~~~~~~~~~~l~~~Gk  174 (174)
T d1f8fa2         156 SGSPKKFIPELVRLYQQGK  174 (174)
T ss_dssp             GSCHHHHHHHHHHHHHTTS
T ss_pred             CCChHHHHHHHHHHHHcCC
Confidence            7766778999999999986

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.97  E-value=2.8e-30  Score=195.89  Aligned_cols=173  Identities=39%  Similarity=0.647  Sum_probs=149.5

Q ss_pred             CcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCC
Q 024295           58 DPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPD  137 (269)
Q Consensus        58 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~  137 (269)
                      ++++||+++|.+.|+|+++.+.+++++|++|+|+|+|++|++++|+++..|+++|++++.+++|++.++++|+++++|+.
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~   81 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPR   81 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCc
Confidence            35789999999999999998899999999999999999999999999999998999999999999999999999999875


Q ss_pred             CCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC
Q 024295          138 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI  217 (269)
Q Consensus       138 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (269)
                      +  .++..+.+.+.+.+.++|++|||+|.+..++.++++++++.|+++.+|.+. .+.++++..++ .++++.|+.++++
T Consensus        82 ~--~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~-~~~~i~~~~~~-~~k~i~Gs~~Gs~  157 (174)
T d1e3ia2          82 E--LDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV-DEMTIPTVDVI-LGRSINGTFFGGW  157 (174)
T ss_dssp             G--CSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSS-SEEEEEHHHHH-TTCEEEECSGGGC
T ss_pred             c--chhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCC-CccccchHHHh-ccCEEEEEEeeCC
Confidence            4  133444444444445999999999999899999999998339999999876 46677777766 5789999998887


Q ss_pred             CCCCcHHHHHHHHHCCC
Q 024295          218 KTKSDLPTLLDKCKNKE  234 (269)
Q Consensus       218 ~~~~~~~~~~~l~~~g~  234 (269)
                      .++++++++++++++||
T Consensus       158 ~~~~d~p~li~l~~~GK  174 (174)
T d1e3ia2         158 KSVDSVPNLVSDYKNKK  174 (174)
T ss_dssp             CHHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHHHHHHHHCcC
Confidence            77788999999999986

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.97  E-value=1.2e-29  Score=192.78  Aligned_cols=172  Identities=38%  Similarity=0.659  Sum_probs=145.1

Q ss_pred             cccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCC
Q 024295           59 PSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDD  138 (269)
Q Consensus        59 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~  138 (269)
                      +.+||++.|.+.|||+++.+.++++++++|||+|+|++|++++|++|++|+++|++++++++|++.++++|+++++|+++
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~   81 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKD   81 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGG
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCC
Confidence            45689999999999999989999999999999999999999999999999989999999999999999999999999865


Q ss_pred             CCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeeccCC
Q 024295          139 EPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGI  217 (269)
Q Consensus       139 ~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  217 (269)
                        .+++.+++.+.+.+.++|++||++|.+..+..++..+.++.|+++.+|.+.. ...++++..++ +++++.|+.++++
T Consensus        82 --~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~-~~~~i~Gs~~G~~  158 (174)
T d1p0fa2          82 --YDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLL-TGRSLKGSVFGGF  158 (174)
T ss_dssp             --CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHH-TTCEEEECSGGGC
T ss_pred             --chhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHHh-CCCEEEEEEeCCC
Confidence              2334444444444449999999999988888999888763389999997654 45666655555 7899999998876


Q ss_pred             CCCCcHHHHHHHHHCCC
Q 024295          218 KTKSDLPTLLDKCKNKE  234 (269)
Q Consensus       218 ~~~~~~~~~~~l~~~g~  234 (269)
                      .. ++++++++++++||
T Consensus       159 ~~-~d~~~lidl~~~gK  174 (174)
T d1p0fa2         159 KG-EEVSRLVDDYMKKK  174 (174)
T ss_dssp             CG-GGHHHHHHHHHTTS
T ss_pred             CH-HHHHHHHHHHHcCC
Confidence            43 58999999999986

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-30  Score=198.28  Aligned_cols=168  Identities=25%  Similarity=0.284  Sum_probs=149.5

Q ss_pred             CCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeC
Q 024295           57 IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFIN  135 (269)
Q Consensus        57 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~  135 (269)
                      +|+++||+++++++|||+++.+.++++++++|||+|+ |++|++++|+++.+|+ +|+++++++++.+.++++|+++++|
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi~   79 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFN   79 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCcccccc
Confidence            5789999999999999999988999999999999995 9999999999999999 8999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeecc
Q 024295          136 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFG  215 (269)
Q Consensus       136 ~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (269)
                      +++   .++.+.+++.+++.++|++||++|++ .++.++++++++ |+++.+|...  ..++++..++.|++++.|+.+.
T Consensus        80 ~~~---~~~~~~i~~~t~~~g~d~v~d~~g~~-~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~k~~~i~g~~~~  152 (174)
T d1yb5a2          80 HRE---VNYIDKIKKYVGEKGIDIIIEMLANV-NLSKDLSLLSHG-GRVIVVGSRG--TIEINPRDTMAKESSIIGVTLF  152 (174)
T ss_dssp             TTS---TTHHHHHHHHHCTTCEEEEEESCHHH-HHHHHHHHEEEE-EEEEECCCCS--CEEECTHHHHTTTCEEEECCGG
T ss_pred             ccc---ccHHHHhhhhhccCCceEEeecccHH-HHHHHHhccCCC-CEEEEEecCC--CCCCCHHHHHHCCCEEEEEEec
Confidence            988   89999999999988999999999965 889999999996 9999999654  5677788888899999998754


Q ss_pred             CCCCCCcHHHHHHHHHCC
Q 024295          216 GIKTKSDLPTLLDKCKNK  233 (269)
Q Consensus       216 ~~~~~~~~~~~~~l~~~g  233 (269)
                      .. ++++++++.++++++
T Consensus       153 ~~-~~~~~~~~~~~l~~g  169 (174)
T d1yb5a2         153 SS-TKEEFQQYAAALQAG  169 (174)
T ss_dssp             GC-CHHHHHHHHHHHHHH
T ss_pred             CC-CHHHHHHHHHHHHHH
Confidence            43 235677777777654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.96  E-value=1.1e-29  Score=192.82  Aligned_cols=171  Identities=30%  Similarity=0.443  Sum_probs=147.1

Q ss_pred             CCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCC
Q 024295           57 IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINP  136 (269)
Q Consensus        57 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~  136 (269)
                      +|+++|++++++++|||+++ +.++++++++|||+|+|++|++++|++|..|+++|++++++++|++.++++|+++++|+
T Consensus         1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~   79 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNY   79 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECG
T ss_pred             CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccc
Confidence            57899999999999999996 67999999999999999999999999999999889999999999999999999999999


Q ss_pred             CCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhH--hhhhCCceEEeee
Q 024295          137 DDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVI--ALACGGRTLKGTT  213 (269)
Q Consensus       137 ~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~--~~~~~~~~~~~~~  213 (269)
                      ++   +++.+.+++++++.++|++|||+|++..++.++++++++ |+++.+|.+.. ...+++..  ....+++++.++.
T Consensus        80 ~~---~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~  155 (174)
T d1jqba2          80 KN---GHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPG-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGL  155 (174)
T ss_dssp             GG---SCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBC
T ss_pred             cc---hhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcC-CEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEec
Confidence            87   889999999999889999999999888899999999996 99999997654 33333322  2334788999886


Q ss_pred             ccCCCCCCcHHHHHHHHHCCC
Q 024295          214 FGGIKTKSDLPTLLDKCKNKE  234 (269)
Q Consensus       214 ~~~~~~~~~~~~~~~l~~~g~  234 (269)
                      .+..  +..++.+.+++++||
T Consensus       156 ~~~~--r~~~e~l~~li~~gk  174 (174)
T d1jqba2         156 CPGG--RLRAERLRDMVVYNR  174 (174)
T ss_dssp             CCCH--HHHHHHHHHHHHTTS
T ss_pred             CCCC--cccHHHHHHHHHcCC
Confidence            5442  345677888988875

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.96  E-value=3.9e-29  Score=190.78  Aligned_cols=174  Identities=41%  Similarity=0.626  Sum_probs=144.7

Q ss_pred             CcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCC
Q 024295           58 DPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPD  137 (269)
Q Consensus        58 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~  137 (269)
                      |+++||+++|++.|||+++.+.+++++|++|||+|+|++|++++|+++.+|+++|++++++++|++.++++|+++++|+.
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~   81 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCC
Confidence            56889999999999999998899999999999999999999999999999988999999999999999999999999886


Q ss_pred             CCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeeccC
Q 024295          138 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGG  216 (269)
Q Consensus       138 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  216 (269)
                      + .+++..+.+++.+++ ++|++||++|.+..++.+..+++++ |.++.++.... .....+....+.+++++.|+.+++
T Consensus        82 ~-~~~~~~~~~~~~~~~-g~D~vid~~G~~~~~~~~~~~~~~g-~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~  158 (176)
T d2fzwa2          82 D-FSKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKG-WGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGG  158 (176)
T ss_dssp             G-CSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCTT-TCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGG
T ss_pred             c-hhhHHHHHHHHHcCC-CCcEeeecCCCHHHHHHHHHhhcCC-ceeEEEEeeccccccccccHHHHHCCCEEEEEeeeC
Confidence            4 123455555555555 9999999999988888999999996 88877754443 222333333344899999999888


Q ss_pred             CCCCCcHHHHHHHHHCCC
Q 024295          217 IKTKSDLPTLLDKCKNKE  234 (269)
Q Consensus       217 ~~~~~~~~~~~~l~~~g~  234 (269)
                      +..++++.++++++++||
T Consensus       159 ~~~~~d~~~li~l~~~GK  176 (176)
T d2fzwa2         159 WKSVESVPKLVSEYMSKK  176 (176)
T ss_dssp             CCHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHHHHHHcCC
Confidence            777788999999999986

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.96  E-value=3.2e-29  Score=190.58  Aligned_cols=172  Identities=39%  Similarity=0.642  Sum_probs=148.6

Q ss_pred             CcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCC
Q 024295           58 DPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPD  137 (269)
Q Consensus        58 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~  137 (269)
                      +++.||+++|.+.|+|+++.+.++++++++|+|+|+|++|+.++|++++.|+.+|++++.+++|++.++++|+++++|++
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~   82 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPK   82 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECcc
Confidence            57899999999999999998999999999999999999999999999999988999999999999999999999999987


Q ss_pred             CCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeeccC
Q 024295          138 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGG  216 (269)
Q Consensus       138 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  216 (269)
                      +  .+...+.+.+.+.+.++|+++|++|.+..+..++..+.++.|+++.+|.+.. ....+++..++ +++++.|+.++.
T Consensus        83 ~--~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~-~~~~i~Gs~~G~  159 (176)
T d1d1ta2          83 D--STKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLF-TGRTWKGCVFGG  159 (176)
T ss_dssp             G--CSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHHHH-TTCEEEECSGGG
T ss_pred             c--cchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHHHh-CCCEEEEEEEeC
Confidence            5  2334566667666679999999999988888888877653499999998765 44555555555 789999999988


Q ss_pred             CCCCCcHHHHHHHHHC
Q 024295          217 IKTKSDLPTLLDKCKN  232 (269)
Q Consensus       217 ~~~~~~~~~~~~l~~~  232 (269)
                      .+++++++++++++.+
T Consensus       160 ~~~~~dip~li~~~~~  175 (176)
T d1d1ta2         160 LKSRDDVPKLVTEFLA  175 (176)
T ss_dssp             CCHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHhC
Confidence            8788899999998764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.96  E-value=2.8e-29  Score=190.45  Aligned_cols=169  Identities=23%  Similarity=0.296  Sum_probs=154.0

Q ss_pred             CCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeC
Q 024295           57 IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFIN  135 (269)
Q Consensus        57 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~  135 (269)
                      +++.+||+++|+++|||+++ ++.+++++++|+|+|+ |++|++++|+++..|+.+|++++++++|++.++++|++++++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~   79 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVIN   79 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeec
Confidence            46789999999999999997 6789999999999995 999999999999999879999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeecc
Q 024295          136 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFG  215 (269)
Q Consensus       136 ~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (269)
                      +++   .++.+.+++.+++.++|++|||+|++..++.++++++++ |+++.+|.+. .+.+++...+++|++++.|++..
T Consensus        80 ~~~---~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~k~i~i~Gs~~~  154 (170)
T d1jvba2          80 ASM---QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFG-ADLHYHAPLITLSEIQFVGSLVG  154 (170)
T ss_dssp             TTT---SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSC-CCCCCCHHHHHHHTCEEEECCSC
T ss_pred             cCC---cCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccC-CEEEEecccc-CccccCHHHHHhCCcEEEEEecC
Confidence            887   889999999888778999999999988899999999996 9999999876 46788888899999999999865


Q ss_pred             CCCCCCcHHHHHHHHHCCC
Q 024295          216 GIKTKSDLPTLLDKCKNKE  234 (269)
Q Consensus       216 ~~~~~~~~~~~~~l~~~g~  234 (269)
                      +   +++++++++++++||
T Consensus       155 ~---~~d~~~~l~lv~~GK  170 (170)
T d1jvba2         155 N---QSDFLGIMRLAEAGK  170 (170)
T ss_dssp             C---HHHHHHHHHHHHTTS
T ss_pred             C---HHHHHHHHHHHHcCC
Confidence            4   478999999999986

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-28  Score=186.57  Aligned_cols=169  Identities=21%  Similarity=0.363  Sum_probs=146.0

Q ss_pred             CCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCC
Q 024295           57 IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINP  136 (269)
Q Consensus        57 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~  136 (269)
                      +|+++||++. ++++||+++ ++++++++++|+|+|+|++|++++|+++..|+++|++++++++|++.++++|+++++++
T Consensus         1 vS~e~Aal~e-pla~a~~a~-~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~   78 (171)
T d1pl8a2           1 VTFEEGALIE-PLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI   78 (171)
T ss_dssp             SCHHHHHHHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccc
Confidence            4788988775 899999986 67899999999999999999999999999999899999999999999999999999988


Q ss_pred             CCCCCccHHHHHHhh--hCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeec
Q 024295          137 DDEPNKSISELVKGI--THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTF  214 (269)
Q Consensus       137 ~~~~~~~~~~~i~~~--~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (269)
                      .+   .+..+..+..  +.+.++|++|||+|++..++.++++++++ |+++.+|.+. .+.++++..++.|++++.|++.
T Consensus        79 ~~---~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~g-G~iv~~G~~~-~~~~~~~~~~~~k~l~i~Gs~~  153 (171)
T d1pl8a2          79 SK---ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGS-EMTTVPLLHAAIREVDIKGVFR  153 (171)
T ss_dssp             SS---CCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCC-SCCCCCHHHHHHTTCEEEECCS
T ss_pred             cc---cccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCC-CEEEEEecCC-CCCccCHHHHHHCCcEEEEEeC
Confidence            76   5544433332  23459999999999998899999999996 9999999877 4678888999999999999852


Q ss_pred             cCCCCCCcHHHHHHHHHCCCCC
Q 024295          215 GGIKTKSDLPTLLDKCKNKEFK  236 (269)
Q Consensus       215 ~~~~~~~~~~~~~~l~~~g~~~  236 (269)
                          +.++++++++++++|+++
T Consensus       154 ----~~~~~~~al~li~~gkid  171 (171)
T d1pl8a2         154 ----YCNTWPVAISMLASKSVN  171 (171)
T ss_dssp             ----CSSCHHHHHHHHHTTSCC
T ss_pred             ----CHhHHHHHHHHHHcCCCC
Confidence                236799999999999864

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.96  E-value=1.5e-29  Score=194.24  Aligned_cols=173  Identities=17%  Similarity=0.251  Sum_probs=147.2

Q ss_pred             ccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCC
Q 024295           60 SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDD  138 (269)
Q Consensus        60 ~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~  138 (269)
                      +|||+++++++|||+++.+.++++++++|||+|+ |++|++++|+|+..|+ +++++++++++.+.++++|+++++++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~vi~~~~   79 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRS   79 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTC
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccccccccccCCc
Confidence            5789999999999999999999999999999985 9999999999999999 9999998999999999999999999987


Q ss_pred             CCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHhhhhCCceEEeeeccCC
Q 024295          139 EPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIALACGGRTLKGTTFGGI  217 (269)
Q Consensus       139 ~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  217 (269)
                         +++.+++++.+++.++|++||++|++ .++.++++++++ |+++.+|.... ....+... ++.++.++.+......
T Consensus        80 ---~~~~~~v~~~t~~~g~d~v~d~~g~~-~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  153 (183)
T d1pqwa_          80 ---VDFADEILELTDGYGVDVVLNSLAGE-AIQRGVQILAPG-GRFIELGKKDVYADASLGLA-ALAKSASFSVVDLDLN  153 (183)
T ss_dssp             ---STHHHHHHHHTTTCCEEEEEECCCTH-HHHHHHHTEEEE-EEEEECSCGGGTTTCEEEGG-GGTTTCEEEECCHHHH
T ss_pred             ---cCHHHHHHHHhCCCCEEEEEecccch-HHHHHHHHhcCC-CEEEEEccCCCCCCcccchH-HHhCCcEEEEEEccce
Confidence               89999999999988999999999985 889999999996 99999997654 22233333 3348899888754322


Q ss_pred             C------CCCcHHHHHHHHHCCCCCCCc
Q 024295          218 K------TKSDLPTLLDKCKNKEFKLHQ  239 (269)
Q Consensus       218 ~------~~~~~~~~~~l~~~g~~~~~~  239 (269)
                      .      .++.++++.+++++|++++.|
T Consensus       154 ~~~~~~~~~~~~~~v~~~i~~G~i~p~P  181 (183)
T d1pqwa_         154 LKLQPARYRQLLQHILQHVADGKLEVLP  181 (183)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             eccCHHHHHHHHHHHHHHHHCCCCceeC
Confidence            1      124588889999999988754

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=5.3e-29  Score=190.92  Aligned_cols=172  Identities=27%  Similarity=0.315  Sum_probs=145.7

Q ss_pred             cccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCC
Q 024295           59 PSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDD  138 (269)
Q Consensus        59 ~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~  138 (269)
                      ++.+|.+.|+.+|||+++.+..++++|++|||+|+|++|++++|++++.|+++|+++++++++++.++++|+++++|+++
T Consensus         3 ~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~   82 (182)
T d1vj0a2           3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRE   82 (182)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred             HHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccc
Confidence            34577888999999999988899999999999999999999999999999988999999999999999999999999887


Q ss_pred             CCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC-ccccchhHh-hhhCCceEEeeeccC
Q 024295          139 EPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD-AMVPLNVIA-LACGGRTLKGTTFGG  216 (269)
Q Consensus       139 ~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~  216 (269)
                      .+..+..+.+.+.+++.++|+||||+|++..++.++++++++ |+++.+|.... .+.+++... +++|++++.|++..+
T Consensus        83 ~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~~~  161 (182)
T d1vj0a2          83 TSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSD  161 (182)
T ss_dssp             SCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCC
T ss_pred             cchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCC-CEEEEEeecCCCCccccccHHHHHHCCcEEEEEEeCC
Confidence            222234556778888889999999999987899999999996 99999997654 455665543 567999999987653


Q ss_pred             CCCCCcHHHHHHHHHCCC
Q 024295          217 IKTKSDLPTLLDKCKNKE  234 (269)
Q Consensus       217 ~~~~~~~~~~~~l~~~g~  234 (269)
                         .++++++++++++..
T Consensus       162 ---~~~~~~~~~~i~~~~  176 (182)
T d1vj0a2         162 ---TSHFVKTVSITSRNY  176 (182)
T ss_dssp             ---HHHHHHHHHHHHTCH
T ss_pred             ---HHHHHHHHHHHHHCh
Confidence               367888899887753

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.96  E-value=1.3e-28  Score=187.01  Aligned_cols=166  Identities=20%  Similarity=0.280  Sum_probs=146.8

Q ss_pred             cccccccccchhhhHHHHHHhc-CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCC
Q 024295           59 PSDASFLSCGFTTGYGAAWKEA-KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPD  137 (269)
Q Consensus        59 ~~~aa~~~~~~~~a~~~l~~~~-~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~  137 (269)
                      +.++|+++++++|||+++.+.. .++++++|||+|+|++|++++|+++..|+++|++++++++|++.++++|++++++++
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~   85 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR   85 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCc
Confidence            5678899999999999998766 489999999999999999999999999988999999999999999999999999987


Q ss_pred             CCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC
Q 024295          138 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI  217 (269)
Q Consensus       138 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (269)
                      +   + ..+.+.+.+++.++|++||++|++..++.++++++++ |+++.+|...  +.+++...++.|++++.|++.+. 
T Consensus        86 ~---~-~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~~--~~~~~~~~l~~k~~~i~Gs~~~~-  157 (172)
T d1h2ba2          86 R---D-PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRLIIVGYGG--ELRFPTIRVISSEVSFEGSLVGN-  157 (172)
T ss_dssp             S---C-HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEE-EEEEECCCSS--CCCCCHHHHHHTTCEEEECCSCC-
T ss_pred             c---c-HHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCC-CEEEEEeCcc--cccCCHHHHHhCCcEEEEEEecC-
Confidence            4   4 4555667777779999999999988899999999996 9999999654  56788888999999999998654 


Q ss_pred             CCCCcHHHHHHHHHCCC
Q 024295          218 KTKSDLPTLLDKCKNKE  234 (269)
Q Consensus       218 ~~~~~~~~~~~l~~~g~  234 (269)
                        +++++++++++.+||
T Consensus       158 --~~d~~~~l~l~~~GK  172 (172)
T d1h2ba2         158 --YVELHELVTLALQGK  172 (172)
T ss_dssp             --HHHHHHHHHHHHTTS
T ss_pred             --HHHHHHHHHHHHcCC
Confidence              467999999999986

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.96  E-value=2.6e-28  Score=185.93  Aligned_cols=174  Identities=40%  Similarity=0.608  Sum_probs=146.4

Q ss_pred             CcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCC
Q 024295           58 DPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPD  137 (269)
Q Consensus        58 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~  137 (269)
                      |+++||+++|++.|||+++.+.++++++++|+|+|+|++|+.++++++..|+.+|++++++++|++.++++|+++++|+.
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~   81 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPN   81 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCC
Confidence            56889999999999999998999999999999999999999999999999988999999999999999999999999986


Q ss_pred             CCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC
Q 024295          138 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI  217 (269)
Q Consensus       138 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (269)
                      +  ..+..+++++.+.+.++|+++|++|.+..+..++.+++++.+.++..|.... ....+...++.+++++.|+.++++
T Consensus        82 ~--~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~-~~~~~~~~~~~~~~~i~Gs~~G~~  158 (175)
T d1cdoa2          82 D--HSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDL-HDVATRPIQLIAGRTWKGSMFGGF  158 (175)
T ss_dssp             G--CSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSS-SCEEECHHHHHTTCEEEECSGGGC
T ss_pred             C--cchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCC-cccCccHHHHHCCcEEEEEEEeCC
Confidence            5  2445666777666669999999999988888889988875244455555443 333444455568999999998887


Q ss_pred             CCCCcHHHHHHHHHCCC
Q 024295          218 KTKSDLPTLLDKCKNKE  234 (269)
Q Consensus       218 ~~~~~~~~~~~l~~~g~  234 (269)
                      ..+++++++++++.+||
T Consensus       159 ~~~~d~~~~i~l~~~gK  175 (175)
T d1cdoa2         159 KGKDGVPKMVKAYLDKK  175 (175)
T ss_dssp             CHHHHHHHHHHHHHTTS
T ss_pred             cHHHHHHHHHHHHHcCC
Confidence            77789999999999986

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.96  E-value=4.5e-28  Score=184.71  Aligned_cols=175  Identities=38%  Similarity=0.575  Sum_probs=143.9

Q ss_pred             CcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCC
Q 024295           58 DPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPD  137 (269)
Q Consensus        58 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~  137 (269)
                      |+++||+++|+++|||+++.+.+++++|++|||+|+|++|++++++++..|+.+|++++++++|++.++++|+++++++.
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~   81 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecC
Confidence            57889999999999999999999999999999999999999999999999988999999999999999999999999875


Q ss_pred             CCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCC
Q 024295          138 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGI  217 (269)
Q Consensus       138 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (269)
                      +  .++..+...+.+.+.++|++||++|.+..++.++..++.++|.++..+.+......+....++.+++++.|+.++++
T Consensus        82 ~--~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~  159 (176)
T d2jhfa2          82 D--YKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGF  159 (176)
T ss_dssp             G--CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGC
T ss_pred             C--chhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCcccccccHHHHhCCCEEEEEEEeCC
Confidence            4  23444455555544599999999999888899999999852444444444433323333345559999999998888


Q ss_pred             CCCCcHHHHHHHHHCCC
Q 024295          218 KTKSDLPTLLDKCKNKE  234 (269)
Q Consensus       218 ~~~~~~~~~~~l~~~g~  234 (269)
                      .++++++++++++++||
T Consensus       160 ~~~~~~~~li~~~~~GK  176 (176)
T d2jhfa2         160 KSKDSVPKLVADFMAKK  176 (176)
T ss_dssp             CHHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHHCcC
Confidence            77788999999999886

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.96  E-value=3.6e-28  Score=183.58  Aligned_cols=165  Identities=22%  Similarity=0.326  Sum_probs=147.3

Q ss_pred             CCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCC
Q 024295           57 IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINP  136 (269)
Q Consensus        57 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~  136 (269)
                      ++++++|+++|+++|||+++ ++++++++++|+|+|+|++|++++|++|..|+ +|++++++++|++.++++|+++++|+
T Consensus         1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~i~~   78 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNA   78 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCccccccc
Confidence            47899999999999999997 56899999999999999999999999999998 99999999999999999999999999


Q ss_pred             CCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccC
Q 024295          137 DDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGG  216 (269)
Q Consensus       137 ~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (269)
                      .+   +++.+.+.+.+.  +++.++++++++..++.++++++++ |+++.+|.+. .+.+++...++.|++++.|+....
T Consensus        79 ~~---~~~~~~~~~~~~--g~~~~i~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~k~~~i~Gs~~~~  151 (166)
T d1llua2          79 RQ---EDPVEAIQRDIG--GAHGVLVTAVSNSAFGQAIGMARRG-GTIALVGLPP-GDFPTPIFDVVLKGLHIAGSIVGT  151 (166)
T ss_dssp             TT---SCHHHHHHHHHS--SEEEEEECCSCHHHHHHHHTTEEEE-EEEEECCCCS-SEEEEEHHHHHHTTCEEEECCSCC
T ss_pred             cc---hhHHHHHHHhhc--CCcccccccccchHHHHHHHHhcCC-cEEEEEEecC-CCccCCHHHHHhCCcEEEEEeecC
Confidence            87   888888887664  5777778887778999999999996 9999999876 467888889999999999987654


Q ss_pred             CCCCCcHHHHHHHHHCC
Q 024295          217 IKTKSDLPTLLDKCKNK  233 (269)
Q Consensus       217 ~~~~~~~~~~~~l~~~g  233 (269)
                         +++++++++++.+|
T Consensus       152 ---~~d~~e~l~l~~~G  165 (166)
T d1llua2         152 ---RADLQEALDFAGEG  165 (166)
T ss_dssp             ---HHHHHHHHHHHHTT
T ss_pred             ---HHHHHHHHHHHHCc
Confidence               46799999999887

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=1.1e-28  Score=186.58  Aligned_cols=171  Identities=18%  Similarity=0.148  Sum_probs=138.3

Q ss_pred             CCcccccccccchhhhHHHH---HHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce
Q 024295           57 IDPSDASFLSCGFTTGYGAA---WKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD  132 (269)
Q Consensus        57 ~~~~~aa~~~~~~~~a~~~l---~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~  132 (269)
                      +|+++||+++++++|||+++   ...++.+++++|||+|+ |++|.+++|++|..|+ +|+++++++++.+.++++|+++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccce
Confidence            68999999999999999764   45688889999999985 9999999999999999 9999999999999999999999


Q ss_pred             eeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEee
Q 024295          133 FINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGT  212 (269)
Q Consensus       133 v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  212 (269)
                      ++|+++    .+.+.++ .+++.++|+|||++|++ .+..++++++++ |+++.+|...+...+++...++.|++++.|.
T Consensus        80 vi~~~~----~~~~~~~-~~~~~gvD~vid~vgg~-~~~~~l~~l~~~-Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv  152 (176)
T d1xa0a2          80 VLARED----VMAERIR-PLDKQRWAAAVDPVGGR-TLATVLSRMRYG-GAVAVSGLTGGAEVPTTVHPFILRGVSLLGI  152 (176)
T ss_dssp             EEECC--------------CCSCCEEEEEECSTTT-THHHHHHTEEEE-EEEEECSCCSSSCCCCCSHHHHHTTCEEEEC
T ss_pred             eeecch----hHHHHHH-HhhccCcCEEEEcCCch-hHHHHHHHhCCC-ceEEEeecccCcccCCCHHHHHHCCcEEEEE
Confidence            999863    3444444 44555999999999987 889999999996 9999999887667788888999999999997


Q ss_pred             eccCCCCCCcHHHHHHHHHCCCCCC
Q 024295          213 TFGGIKTKSDLPTLLDKCKNKEFKL  237 (269)
Q Consensus       213 ~~~~~~~~~~~~~~~~l~~~g~~~~  237 (269)
                      ..... +.+...++++.+ .++++|
T Consensus       153 ~~~~~-~~~~~~~~~~~l-ag~lkP  175 (176)
T d1xa0a2         153 DSVYC-PMDLRLRIWERL-AGDLKP  175 (176)
T ss_dssp             CSSSC-CHHHHHHHHHHH-HTTTCC
T ss_pred             eCCcC-CHHHHHHHHHHH-hcccCC
Confidence            53322 234555666665 366655

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.95  E-value=1.8e-27  Score=180.37  Aligned_cols=168  Identities=23%  Similarity=0.387  Sum_probs=140.7

Q ss_pred             CCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCC
Q 024295           57 IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINP  136 (269)
Q Consensus        57 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~  136 (269)
                      +|+++||++. |+++||+++ ++++++++++|+|+|+|++|++++|++|..|+ +|++++++++|++.++++|++..++.
T Consensus         1 VS~e~Aal~e-Pla~a~~a~-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~   77 (170)
T d1e3ja2           1 VSLEEGALLE-PLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVV   77 (170)
T ss_dssp             SCHHHHHTHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEec
Confidence            4788998875 899999986 67899999999999999999999999999999 99999999999999999999876644


Q ss_pred             CC--CCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeec
Q 024295          137 DD--EPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTF  214 (269)
Q Consensus       137 ~~--~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (269)
                      +.  .+..+..+.+++..++ ++|++|||+|++..++.++++++++ |+++.+|.+. .+.+++...++.|++++.|++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~g~-g~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~-~~~~~~~~~~~~k~i~i~gs~~  154 (170)
T d1e3ja2          78 DPAKEEESSIIERIRSAIGD-LPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGS-QMVTVPLVNACAREIDIKSVFR  154 (170)
T ss_dssp             CTTTSCHHHHHHHHHHHSSS-CCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCS-SCCCCCHHHHHTTTCEEEECCS
T ss_pred             cccccccchhhhhhhccccc-CCceeeecCCChHHHHHHHHHHhcC-CceEEEecCC-CCCCcCHHHHHHCCCEEEEEEC
Confidence            32  1112334445554444 9999999999988899999999996 9999999876 4667888889999999999853


Q ss_pred             cCCCCCCcHHHHHHHHHCCC
Q 024295          215 GGIKTKSDLPTLLDKCKNKE  234 (269)
Q Consensus       215 ~~~~~~~~~~~~~~l~~~g~  234 (269)
                          +.++++++++++++||
T Consensus       155 ----~~~~~~~ai~li~~Gk  170 (170)
T d1e3ja2         155 ----YCNDYPIALEMVASGR  170 (170)
T ss_dssp             ----CSSCHHHHHHHHHTTS
T ss_pred             ----CHHHHHHHHHHHHcCC
Confidence                2357999999999986

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=1.9e-27  Score=179.88  Aligned_cols=168  Identities=23%  Similarity=0.358  Sum_probs=149.8

Q ss_pred             CCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCC
Q 024295           57 IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINP  136 (269)
Q Consensus        57 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~  136 (269)
                      +|+++||+++++++|||+++ +..+++++++|||+|+|++|++++|+++..|+ +|++++++++|++.++++|+++++++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~~~   78 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNP   78 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECT
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceeccc
Confidence            58899999999999999987 46889999999999999999999999999999 89999999999999999999999999


Q ss_pred             CCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccC
Q 024295          137 DDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGG  216 (269)
Q Consensus       137 ~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (269)
                      .+   .++.+.+++.+++  .|.++++++++..+..++++++++ |+++.+|.+. .+.+++...++.+++++.|+... 
T Consensus        79 ~~---~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~a~~~l~~~-G~i~~~g~~~-~~~~~~~~~~~~~~~~i~gs~~~-  150 (168)
T d1rjwa2          79 LK---EDAAKFMKEKVGG--VHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPP-EEMPIPIFDTVLNGIKIIGSIVG-  150 (168)
T ss_dssp             TT---SCHHHHHHHHHSS--EEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCS-SEEEEEHHHHHHTTCEEEECCSC-
T ss_pred             cc---chhhhhcccccCC--CceEEeecCCHHHHHHHHHHhccC-CceEeccccc-CCCCCCHHHHHHCCcEEEEEeeC-
Confidence            88   8899999988864  555666777777899999999996 9999999876 46778888889999999998754 


Q ss_pred             CCCCCcHHHHHHHHHCCCCC
Q 024295          217 IKTKSDLPTLLDKCKNKEFK  236 (269)
Q Consensus       217 ~~~~~~~~~~~~l~~~g~~~  236 (269)
                        ++++++++++++++|+++
T Consensus       151 --~~~~~~~~l~l~~~Gkik  168 (168)
T d1rjwa2         151 --TRKDLQEALQFAAEGKVK  168 (168)
T ss_dssp             --CHHHHHHHHHHHHTTSCC
T ss_pred             --CHHHHHHHHHHHHhCCCC
Confidence              357899999999999964

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=4.5e-28  Score=185.32  Aligned_cols=171  Identities=21%  Similarity=0.199  Sum_probs=139.7

Q ss_pred             CCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeC
Q 024295           57 IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFIN  135 (269)
Q Consensus        57 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~  135 (269)
                      +|+++||+++++++|||++|.+.++++++++|||+|+ |++|++++|+|+..|+ +|+++++++++++.++++|+++++|
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEEE
Confidence            5789999999999999999999999999999999975 7899999999999999 9999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhC-CceEEeeec
Q 024295          136 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACG-GRTLKGTTF  214 (269)
Q Consensus       136 ~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~  214 (269)
                      +++   +++.+++++++++.++|+++|++|++ .+..++++++++ |+++.++.......+++...+..+ ...+....+
T Consensus        80 ~~~---~d~~~~v~~~t~g~g~d~v~d~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l  154 (179)
T d1qora2          80 YRE---EDLVERLKEITGGKKVRVVYDSVGRD-TWERSLDCLQRR-GLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSL  154 (179)
T ss_dssp             TTT---SCHHHHHHHHTTTCCEEEEEECSCGG-GHHHHHHTEEEE-EEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCH
T ss_pred             CCC---CCHHHHHHHHhCCCCeEEEEeCccHH-HHHHHHHHHhcC-CeeeecccccCCccccchhhhhccceEEEEeeEE
Confidence            988   99999999999988999999999876 789999999996 999999877664445555444433 333332222


Q ss_pred             cCC-CCC----CcHHHHHHHHHCC
Q 024295          215 GGI-KTK----SDLPTLLDKCKNK  233 (269)
Q Consensus       215 ~~~-~~~----~~~~~~~~l~~~g  233 (269)
                      ..+ ..+    +.+.++++++++|
T Consensus       155 ~~~~~~~~~~~~~~~~l~~lv~~G  178 (179)
T d1qora2         155 QGYITTREELTEASNELFSLIASG  178 (179)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHHHTT
T ss_pred             eeecCCHHHHHHHHHHHHHHHHCc
Confidence            211 111    2244566677665

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.95  E-value=1.3e-27  Score=183.08  Aligned_cols=165  Identities=19%  Similarity=0.130  Sum_probs=141.5

Q ss_pred             cccccchhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCC
Q 024295           63 SFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPN  141 (269)
Q Consensus        63 a~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  141 (269)
                      ++++++++|||++|.+.+++++|++|||+|+ |++|++++|++|..|+ +|+++++++++.+.++++|+++++++++   
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~~~---   83 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKT---   83 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS---
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhccccc---
Confidence            4577899999999999999999999999986 8899999999999999 9999999999999999999999999987   


Q ss_pred             ccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC------ccccchhHhhhhCCceEEeeecc
Q 024295          142 KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD------AMVPLNVIALACGGRTLKGTTFG  215 (269)
Q Consensus       142 ~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~  215 (269)
                      +++.+.+.+.+++.++|+|||++|++ .++.++++++++ |+++.+|....      .+..+++..+++|++++.|++..
T Consensus        84 ~~~~~~~~~~~~~~Gvd~v~D~vG~~-~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~  161 (182)
T d1v3va2          84 VNSLEEALKKASPDGYDCYFDNVGGE-FLNTVLSQMKDF-GKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVY  161 (182)
T ss_dssp             CSCHHHHHHHHCTTCEEEEEESSCHH-HHHHHGGGEEEE-EEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGG
T ss_pred             ccHHHHHHHHhhcCCCceeEEecCch-hhhhhhhhccCC-CeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEe
Confidence            88888888877777999999999975 889999999996 99999985432      24456667788899999998876


Q ss_pred             CCCC---CCcHHHHHHHHHCC
Q 024295          216 GIKT---KSDLPTLLDKCKNK  233 (269)
Q Consensus       216 ~~~~---~~~~~~~~~l~~~g  233 (269)
                      .+..   .+.++++++++++|
T Consensus       162 ~~~~~~~~~~~~~l~~~i~~G  182 (182)
T d1v3va2         162 RWQGDVREKALRDLMKWVLEG  182 (182)
T ss_dssp             GCCHHHHHHHHHHHHHHHHTT
T ss_pred             ccChHHHHHHHHHHHHHHhCc
Confidence            6532   13467778887765

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.3e-28  Score=183.32  Aligned_cols=165  Identities=21%  Similarity=0.288  Sum_probs=139.6

Q ss_pred             CcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCC
Q 024295           58 DPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPD  137 (269)
Q Consensus        58 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~  137 (269)
                      |.+.||++.|+..|||+++. +.+++++++|+|+|+|++|++++|++|.+|+ +|++++++++|++.++++|+++++++.
T Consensus         2 p~e~AApl~cag~Ta~~al~-~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~~   79 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPLV-RNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATL   79 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHHH-HTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGG
T ss_pred             CHHHHHHHHHHHHHHHHHHH-HhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEEeecc
Confidence            45678899999999999974 6899999999999999999999999999999 899999999999999999999999876


Q ss_pred             CCCCccHHHHHHhhhCCCCccEEEEccCChh--HHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeecc
Q 024295          138 DEPNKSISELVKGITHGMGVDYCFECTGVPS--LLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFG  215 (269)
Q Consensus       138 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~--~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (269)
                      +  +.++.+.    ..+ ++|+++||++...  .+..++++++++ |+++.+|.+.. +.+++...++.|++++.|+..+
T Consensus        80 ~--~~~~~~~----~~~-~~d~vi~~~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~k~~~i~Gs~~g  150 (168)
T d1piwa2          80 E--EGDWGEK----YFD-TFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPEQ-HEMLSLKPYGLKAVSISYSALG  150 (168)
T ss_dssp             G--TSCHHHH----SCS-CEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCCS-SCCEEECGGGCBSCEEEECCCC
T ss_pred             c--hHHHHHh----hhc-ccceEEEEecCCccchHHHHHHHhhcc-ceEEEeccccc-cccccHHHHHhCCcEEEEEeeC
Confidence            4  2344332    223 8999999987643  467889999996 99999997764 5677777888899999999766


Q ss_pred             CCCCCCcHHHHHHHHHCCCCC
Q 024295          216 GIKTKSDLPTLLDKCKNKEFK  236 (269)
Q Consensus       216 ~~~~~~~~~~~~~l~~~g~~~  236 (269)
                      +   +++++++++++++|+++
T Consensus       151 ~---~~~~~e~l~li~~gkIk  168 (168)
T d1piwa2         151 S---IKELNQLLKLVSEKDIK  168 (168)
T ss_dssp             C---HHHHHHHHHHHHHTTCC
T ss_pred             C---HHHHHHHHHHHHhCCCC
Confidence            5   47899999999999864

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.5e-27  Score=180.32  Aligned_cols=165  Identities=21%  Similarity=0.360  Sum_probs=137.1

Q ss_pred             CCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCC
Q 024295           57 IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINP  136 (269)
Q Consensus        57 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~  136 (269)
                      .+++.+|++.|+..|+|+++ +++++++|++|||+|+|++|++++|++|.+|+ +++++++++++++.++++|+++++++
T Consensus         4 ~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~~   81 (168)
T d1uufa2           4 EQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNS   81 (168)
T ss_dssp             GGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEET
T ss_pred             ccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEEEEC
Confidence            45677888899999999997 57999999999999999999999999999999 78889999999999999999999998


Q ss_pred             CCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccC
Q 024295          137 DDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGG  216 (269)
Q Consensus       137 ~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (269)
                      .+   .+..     .....++|++||++|.+..+..++++++++ |+++.+|.+......++...+++|++++.|+..++
T Consensus        82 ~~---~~~~-----~~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~~~~  152 (168)
T d1uufa2          82 RN---ADEM-----AAHLKSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGG  152 (168)
T ss_dssp             TC---HHHH-----HTTTTCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC-------CHHHHHTTTCEEEECCSCC
T ss_pred             ch---hhHH-----HHhcCCCceeeeeeecchhHHHHHHHHhcC-CEEEEeccCCCCcccccHHHHHHCCcEEEEEeecC
Confidence            76   4332     122348999999999887899999999996 99999997665455677778888999999998654


Q ss_pred             CCCCCcHHHHHHHHHCCCC
Q 024295          217 IKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       217 ~~~~~~~~~~~~l~~~g~~  235 (269)
                         +++++++++++.+++|
T Consensus       153 ---~~d~~e~l~l~a~~~I  168 (168)
T d1uufa2         153 ---IPETQEMLDFCAEHGI  168 (168)
T ss_dssp             ---HHHHHHHHHHHHHHTC
T ss_pred             ---HHHHHHHHHHHHHcCC
Confidence               4789999999987764

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.94  E-value=1.3e-27  Score=184.07  Aligned_cols=175  Identities=15%  Similarity=0.121  Sum_probs=141.8

Q ss_pred             CCcccccccccchhhhHHHHHHhcCCCCCCeEEEE-c-CChhHHHHHHHHHHcCCCeEEEEcCCcc----hHHHHHhCCC
Q 024295           57 IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVL-G-LGTVGLGAVDGARMHGAAKIIGIDKNPW----KKEKGKAFGM  130 (269)
Q Consensus        57 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~-G-~g~~G~~a~~la~~~g~~~v~~~~~~~~----~~~~~~~~g~  130 (269)
                      +|+++||+++++++|||++|.+.+++++|++++|+ | +|++|++++|+||.+|+ +|+++.++++    +.+.++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGa   79 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGA   79 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccc
Confidence            57899999999999999999999999999999997 5 48999999999999999 8888876543    4556788999


Q ss_pred             ceeeCCCCCCCccHHHHHHhhh--CCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCce
Q 024295          131 TDFINPDDEPNKSISELVKGIT--HGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRT  208 (269)
Q Consensus       131 ~~v~~~~~~~~~~~~~~i~~~~--~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  208 (269)
                      ++++++++.+..++.+.+++.+  .+.++|++||++|++ .+..++++++++ |+++.+|.....+.+++...+++|+++
T Consensus        80 d~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~-~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~l~~k~~~  157 (189)
T d1gu7a2          80 TQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGK-SSTGIARKLNNN-GLMLTYGGMSFQPVTIPTSLYIFKNFT  157 (189)
T ss_dssp             SEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHH-HHHHHHHTSCTT-CEEEECCCCSSCCEEECHHHHHHSCCE
T ss_pred             cEEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcc-hhhhhhhhhcCC-cEEEEECCccCCCccCcHHHHHHCCcE
Confidence            9999875422245555666543  244899999999976 779999999996 999999976656677888888889999


Q ss_pred             EEeeeccCCCC------CCcHHHHHHHHHCCC
Q 024295          209 LKGTTFGGIKT------KSDLPTLLDKCKNKE  234 (269)
Q Consensus       209 ~~~~~~~~~~~------~~~~~~~~~l~~~g~  234 (269)
                      +.|+++..+..      ++.+.++++++++|+
T Consensus       158 i~G~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk  189 (189)
T d1gu7a2         158 SAGFWVTELLKNNKELKTSTLNQIIAWYEEGK  189 (189)
T ss_dssp             EEECCHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEehHhhhhCHHHHHHHHHHHHHHHHcCC
Confidence            99987654321      245778888888775

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=1.7e-27  Score=180.29  Aligned_cols=148  Identities=23%  Similarity=0.339  Sum_probs=123.5

Q ss_pred             CCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeC
Q 024295           57 IDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFIN  135 (269)
Q Consensus        57 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~  135 (269)
                      +++++||+++++++|||+++. .++++++++|||+|+ |++|++++|++|..|+ +|+++++++++.+.++++|+++++|
T Consensus         1 ls~eeAA~l~~~~~TA~~al~-~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~i~   78 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALK-RAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAAT   78 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHH-HTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccceeee
Confidence            578999999999999999985 589999999999985 9999999999999999 9999999999999999999999998


Q ss_pred             CCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeecc
Q 024295          136 PDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFG  215 (269)
Q Consensus       136 ~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (269)
                      +.+     ..   .+.+++.++|+|||++|.  .+..++++++++ |+++.+|...+...++++..++.|++++.|+++.
T Consensus        79 ~~~-----~~---~~~~~~~g~D~v~d~~G~--~~~~~~~~l~~~-G~~v~~G~~~g~~~~~~~~~~~~k~~~i~g~~~~  147 (171)
T d1iz0a2          79 YAE-----VP---ERAKAWGGLDLVLEVRGK--EVEESLGLLAHG-GRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLT  147 (171)
T ss_dssp             GGG-----HH---HHHHHTTSEEEEEECSCT--THHHHHTTEEEE-EEEEEC-------CCCCTTHHHHTTCEEEECCHH
T ss_pred             hhh-----hh---hhhhccccccccccccch--hHHHHHHHHhcC-CcEEEEeCCCCCCCCccHHHHHHCCcEEEEEeCc
Confidence            753     32   333445699999999873  678999999996 9999999876556678888888899999999765


Q ss_pred             CC
Q 024295          216 GI  217 (269)
Q Consensus       216 ~~  217 (269)
                      .+
T Consensus       148 ~~  149 (171)
T d1iz0a2         148 PL  149 (171)
T ss_dssp             HH
T ss_pred             Ch
Confidence            54

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.93  E-value=4.2e-25  Score=170.20  Aligned_cols=167  Identities=27%  Similarity=0.298  Sum_probs=141.2

Q ss_pred             ccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCC
Q 024295           60 SDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDE  139 (269)
Q Consensus        60 ~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~  139 (269)
                      ++.+++..+++|||+++ +.+++++|++|||+|+|++|++++++++..|+++|++++.+++|++.++++|+++++++.+ 
T Consensus         2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~-   79 (195)
T d1kola2           2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLD-   79 (195)
T ss_dssp             HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSS-
T ss_pred             chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCC-
Confidence            46678888999999996 6799999999999999999999999999999989999999999999999999999999987 


Q ss_pred             CCccHHHHHHhhhCCCCccEEEEccCC---------------hhHHHHHHHHcccCCcEEEEEccCCC-c----------
Q 024295          140 PNKSISELVKGITHGMGVDYCFECTGV---------------PSLLSEALETTKVGKGKVIVIGVGVD-A----------  193 (269)
Q Consensus       140 ~~~~~~~~i~~~~~~~~~d~v~d~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~~~~-~----------  193 (269)
                        .++.+.+.+++++.++|++||++|.               +..++.++++++++ |+++.+|.+.. .          
T Consensus        80 --~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~g-G~v~~~G~~~~~~~~~~~~~~~~  156 (195)
T d1kola2          80 --TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKI  156 (195)
T ss_dssp             --SCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEECSCCCSCCTTCSSHHHHT
T ss_pred             --cCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcC-CEEEEeeecCCCcccchhhhhhc
Confidence              8999999999998899999999984               35799999999996 99999997543 1          


Q ss_pred             -cccchhHhhhhCCceEEeeeccCCCCCCcHHHHHHHHHCCC
Q 024295          194 -MVPLNVIALACGGRTLKGTTFGGIKTKSDLPTLLDKCKNKE  234 (269)
Q Consensus       194 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~  234 (269)
                       ..++++..++.|++++.+   +..+-++.++++++++.++|
T Consensus       157 ~~~~~~~~~~~~k~~~i~~---g~~~v~~~~~~Ll~~I~~~k  195 (195)
T d1kola2         157 GSLSIRFGLGWAKSHSFHT---GQTPVMKYNRALMQAIMWDR  195 (195)
T ss_dssp             TCCCCCHHHHHHTTCEEEE---SSCCHHHHHHHHHHHHHTTS
T ss_pred             CceeeeHHHHHhhcceecc---CCCchHHHHHHHHHHHHcCC
Confidence             123444556668888754   23333456788999988765

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.9e-25  Score=170.47  Aligned_cols=171  Identities=16%  Similarity=0.158  Sum_probs=132.3

Q ss_pred             CCcccccccccchhhhHHHHHHhcCCCCC--CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHH-HHhCCCce
Q 024295           57 IDPSDASFLSCGFTTGYGAAWKEAKVEKG--SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEK-GKAFGMTD  132 (269)
Q Consensus        57 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~~--~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~-~~~~g~~~  132 (269)
                      +|+...| ++++.+|||++|...++++++  ++|||+|+ |++|++++|+||..|+++|++++.++++... .+++|+++
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~   80 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA   80 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence            4566654 677899999999999999987  88999985 9999999999999999777777767666554 56799999


Q ss_pred             eeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC--c----ccc---chhHhhh
Q 024295          133 FINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD--A----MVP---LNVIALA  203 (269)
Q Consensus       133 v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~--~----~~~---~~~~~~~  203 (269)
                      ++|+.+   +++.+.+++.++. ++|+|||++|++ .+..++++++++ |+++.+|...+  .    +.+   .....+.
T Consensus        81 vi~~~~---~~~~~~~~~~~~~-GvDvv~D~vGg~-~~~~~~~~l~~~-G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~  154 (187)
T d1vj1a2          81 AVNYKT---GNVAEQLREACPG-GVDVYFDNVGGD-ISNTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPPAVEAIRK  154 (187)
T ss_dssp             EEETTS---SCHHHHHHHHCTT-CEEEEEESSCHH-HHHHHHTTEEEE-EEEEEC------------CCCCCHHHHHHHH
T ss_pred             Eeeccc---hhHHHHHHHHhcc-CceEEEecCCch-hHHHHhhhcccc-ccEEEeccccccccccccCCchHHHHHHHHH
Confidence            999998   9999999999875 999999999976 789999999996 99999986432  1    111   1122244


Q ss_pred             hCCceEEeeeccCCCC--CCcHHHHHHHHHCCC
Q 024295          204 CGGRTLKGTTFGGIKT--KSDLPTLLDKCKNKE  234 (269)
Q Consensus       204 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~  234 (269)
                      .|++++.++.+..+..  .+.++++.+|+++||
T Consensus       155 ~k~i~~~g~~~~~~~~~~~e~~~~l~~~i~~Gk  187 (187)
T d1vj1a2         155 ERNITRERFTVLNYKDKFEPGILQLSQWFKEGK  187 (187)
T ss_dssp             HTTCEEEECCGGGCGGGHHHHHHHHHHHHHHTS
T ss_pred             hcceEEEEeEecchHHHHHHHHHHHHHHHHCcC
Confidence            6899999876655432  134677888888775

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=3.4e-24  Score=160.63  Aligned_cols=155  Identities=19%  Similarity=0.139  Sum_probs=123.0

Q ss_pred             cchhhhHHH---HHHhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCc
Q 024295           67 CGFTTGYGA---AWKEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNK  142 (269)
Q Consensus        67 ~~~~~a~~~---l~~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  142 (269)
                      ++.+|||.+   |.+....+++++|||+|+ |++|.+++|+||.+|+ +|++++++++|.+.++++|+++++++++    
T Consensus         3 ~aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~vi~~~~----   77 (167)
T d1tt7a2           3 TAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISRED----   77 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHH----
T ss_pred             ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccceEeccc----
Confidence            345677644   555666778889999985 9999999999999999 9999999999999999999999987642    


Q ss_pred             cHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEeeeccCCCCCCc
Q 024295          143 SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGTTFGGIKTKSD  222 (269)
Q Consensus       143 ~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (269)
                       +..+..+.+.+.++|+|||++|++ .+..++++++++ |+++.+|...+...+++...++.|++++.|...... +.+.
T Consensus        78 -~~~~~~~~~~~~gvd~vid~vgg~-~~~~~~~~l~~~-G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~~~~~~-~~~~  153 (167)
T d1tt7a2          78 -VYDGTLKALSKQQWQGAVDPVGGK-QLASLLSKIQYG-GSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYC-PMDV  153 (167)
T ss_dssp             -HCSSCCCSSCCCCEEEEEESCCTH-HHHHHHTTEEEE-EEEEECCCSSCSCEEECSHHHHTSCCEEEECCSSSC-CHHH
T ss_pred             -hhchhhhcccCCCceEEEecCcHH-HHHHHHHHhccC-ceEEEeeccCCCcccCCHHHHHHCCcEEEEEecCCC-CHHH
Confidence             212223334555999999999987 889999999996 999999988777778888899999999999754332 2244


Q ss_pred             HHHHHHHH
Q 024295          223 LPTLLDKC  230 (269)
Q Consensus       223 ~~~~~~l~  230 (269)
                      ..++.+.+
T Consensus       154 ~~~~~~~l  161 (167)
T d1tt7a2         154 RAAVWERM  161 (167)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            45555554

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=1.1e-24  Score=164.87  Aligned_cols=151  Identities=18%  Similarity=0.193  Sum_probs=125.7

Q ss_pred             CCcccccccccchhhhHHHHH---HhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce
Q 024295           57 IDPSDASFLSCGFTTGYGAAW---KEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD  132 (269)
Q Consensus        57 ~~~~~aa~~~~~~~~a~~~l~---~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~  132 (269)
                      +++.+|+.++++.+|||++++   +.....++++|||+|+ |++|.+++|+||.+|+ +|+++++++++.+.++++|+++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhhcccc
Confidence            577899999999999998764   3344445679999985 9999999999999999 9999999999999999999999


Q ss_pred             eeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHhhhhCCceEEee
Q 024295          133 FINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIALACGGRTLKGT  212 (269)
Q Consensus       133 v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  212 (269)
                      ++|+++   .++.+.   +. +...|.++|++|++ .+...+++++++ |+++.+|...+...+++..+++.|++++.|+
T Consensus        80 vi~~~~---~~~~~~---l~-~~~~~~vvD~Vgg~-~~~~~l~~l~~~-Griv~~G~~~~~~~~~~~~~~~~k~~~i~G~  150 (177)
T d1o89a2          80 VLPRDE---FAESRP---LE-KQVWAGAIDTVGDK-VLAKVLAQMNYG-GCVAACGLAGGFTLPTTVMPFILRNVRLQGV  150 (177)
T ss_dssp             EEEGGG---SSSCCS---SC-CCCEEEEEESSCHH-HHHHHHHTEEEE-EEEEECCCTTCSCCCCCSHHHHHHCCEEEEC
T ss_pred             cccccc---HHHHHH---HH-hhcCCeeEEEcchH-HHHHHHHHhccc-cceEeecccCCccccccHHHHHHCCCeEEEE
Confidence            999876   444322   22 23679999999987 889999999996 9999999877666778888888899999998


Q ss_pred             eccCC
Q 024295          213 TFGGI  217 (269)
Q Consensus       213 ~~~~~  217 (269)
                      +....
T Consensus       151 ~~~~~  155 (177)
T d1o89a2         151 DSVMT  155 (177)
T ss_dssp             CSSSC
T ss_pred             ecccC
Confidence            65443

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=3.2e-15  Score=95.32  Aligned_cols=73  Identities=19%  Similarity=0.206  Sum_probs=65.5

Q ss_pred             CCcccccccccchhhhHHHHH---HhcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC
Q 024295           57 IDPSDASFLSCGFTTGYGAAW---KEAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM  130 (269)
Q Consensus        57 ~~~~~aa~~~~~~~~a~~~l~---~~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~  130 (269)
                      +|+++|+.+++++.|||.+++   +....+++++|||+|+ |++|.+++|++|.+|+ +|+++.+++++.++++++|+
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHHCCC
Confidence            578899999999999998765   4456688999999975 9999999999999999 99999999999999999884

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.2e-12  Score=95.51  Aligned_cols=78  Identities=14%  Similarity=0.154  Sum_probs=70.4

Q ss_pred             cccccCCceeeeecCeEEeeee-ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEE
Q 024295           13 NGLMLDSTSRMSVRGQKLYHIF-SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVL   91 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~~-~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~   91 (269)
                      +-.+|+++++|++ ||+|++.. .+|+||||+.+++++++++|+++++++|+.+++..+|+++++...+..+.|+++||+
T Consensus        72 V~~vG~~v~~~~v-GdrV~~~~~~~G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1          72 IEAVGDNASAFKK-GDRVFTSSTISGGYAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             EEEECTTCTTCCT-TCEEEESCCSSCSSBSEEEEEGGGEEECCTTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             eEeecceeecccc-CccccccccccccccccccccccccccccCCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            3456889999999 99998654 559999999999999999999999999999999999999999889999999999984

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.30  E-value=5.6e-13  Score=100.28  Aligned_cols=79  Identities=11%  Similarity=0.080  Sum_probs=68.9

Q ss_pred             cccccCCceeeeecCeEEeee----------------------------eccCcccceEeeccCceEEcCCCCCcccccc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASF   64 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~   64 (269)
                      +-.+|+++.++++ ||+|...                            ..+|+||||+++++++++++|++++++++++
T Consensus        69 Vv~vG~~v~~~~~-GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~  147 (178)
T d1e3ja1          69 VVKVGKNVKHLKK-GDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVT  147 (178)
T ss_dssp             EEEECTTCCSCCT-TCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCCCGGGEE
T ss_pred             EEecCcccCCCCC-CCEEEECcccccCCccccccCCccccccccceeccccccccceeeeecccceeeCCCCCCHHHHHH
Confidence            4455889999999 9999632                            1348999999999999999999999999999


Q ss_pred             cccchhhhHHHHHHhcCCCCCCeEEEEcC
Q 024295           65 LSCGFTTGYGAAWKEAKVEKGSSVAVLGL   93 (269)
Q Consensus        65 ~~~~~~~a~~~l~~~~~~~~~~~vlI~G~   93 (269)
                      +++++.|||+++ +.+++++|++|+|+|+
T Consensus       148 ~~~~~~ta~~a~-~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         148 HSFKLEQTVDAF-EAARKKADNTIKVMIS  175 (178)
T ss_dssp             EEEEGGGHHHHH-HHHHHCCTTCSEEEEE
T ss_pred             HHhHHHHHHHHH-HHhCCCCCCEEEEEcc
Confidence            999999999986 6889999999999973

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.25  E-value=3e-12  Score=90.87  Aligned_cols=72  Identities=10%  Similarity=0.082  Sum_probs=63.1

Q ss_pred             cCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEE
Q 024295           17 LDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVL   91 (269)
Q Consensus        17 g~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~   91 (269)
                      |.+.++.-+ ||+|++...+|+|+||+.++++.++++|+++++++||++++++.|||++|.+++.  .+++||++
T Consensus        60 G~E~~G~Vv-Gd~V~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g~--~g~tvl~l  131 (131)
T d1iz0a1          60 GMEVVGVVE-GRRYAALVPQGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRGH--TGKVVVRL  131 (131)
T ss_dssp             CCEEEEEET-TEEEEEECSSCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTTC--CBEEEEEC
T ss_pred             eeeeEEeec-cceEEEEeccCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhccc--CCCEEEEC
Confidence            555555555 9999999989999999999999999999999999999999999999999977664  58998874

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.24  E-value=1.2e-11  Score=94.43  Aligned_cols=90  Identities=23%  Similarity=0.258  Sum_probs=76.1

Q ss_pred             CCCCCCCcccc-cccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhc
Q 024295            2 TNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEA   80 (269)
Q Consensus         2 ~~~c~~~~~~~-~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~   80 (269)
                      +++|..+..+. .++-.++...+...|..+++...+|+||||++++++.++++|+++++++++++.+++.|+++++....
T Consensus       109 ~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~iP~~~~~~~aa~l~~~l~t~~~av~~~~  188 (199)
T d1cdoa1         109 TNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMK  188 (199)
T ss_dssp             CCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHHHHHHHHH
T ss_pred             cccccccccccccccccCcccceeeccceeecccccCCceEEEEEchHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            45666665544 55556666666666888888887899999999999999999999999999999999999999998888


Q ss_pred             CCCCCCeEEEE
Q 024295           81 KVEKGSSVAVL   91 (269)
Q Consensus        81 ~~~~~~~vlI~   91 (269)
                      +.+.+++|||+
T Consensus       189 ~~~~G~tVlv~  199 (199)
T d1cdoa1         189 HGKCIRTVLSL  199 (199)
T ss_dssp             TTCCSEEEEEC
T ss_pred             CCCCCCEEEeC
Confidence            99999999984

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.14  E-value=2.5e-11  Score=90.34  Aligned_cols=75  Identities=11%  Similarity=0.084  Sum_probs=64.4

Q ss_pred             cccccCCceeeeecCeEEeee---------------------------eccCcccceEeeccCceEEcCCCCCccccccc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFL   65 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~   65 (269)
                      +-.+|+++.++++ ||+|...                           ..+|+||||+.+++++++++|++++++.++++
T Consensus        69 V~~vG~~v~~~~~-GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~aa~~  147 (171)
T d1h2ba1          69 IEEVAEGVEGLEK-GDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHK  147 (171)
T ss_dssp             EEEECTTCCSCCT-TCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCCCEEEEE
T ss_pred             eecccCCCCcCCC-CCEEEEcCccCCCCcccccccccccccccccceeecccccceeeeehhhcceecCCCCCHHHHHHH
Confidence            4456889899999 9999642                           23489999999999999999999999988888


Q ss_pred             ccchhhhHHHHHHhcCCCCCCeEEE
Q 024295           66 SCGFTTGYGAAWKEAKVEKGSSVAV   90 (269)
Q Consensus        66 ~~~~~~a~~~l~~~~~~~~~~~vlI   90 (269)
                      .+++.||++++ +.+.+ .|++|||
T Consensus       148 ~~~~~ta~~al-~~~~~-~G~~VlI  170 (171)
T d1h2ba1         148 LDEINDVLERL-EKGEV-LGRAVLI  170 (171)
T ss_dssp             GGGHHHHHHHH-HTTCC-SSEEEEE
T ss_pred             HhHHHHHHHHH-HhcCC-CCCEEEe
Confidence            88999999997 56777 8999997

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.13  E-value=1.6e-11  Score=89.62  Aligned_cols=73  Identities=15%  Similarity=0.174  Sum_probs=62.0

Q ss_pred             cCCceeeeecCeEEeeee------ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEE
Q 024295           17 LDSTSRMSVRGQKLYHIF------SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAV   90 (269)
Q Consensus        17 g~~~~~~~~~Gd~v~~~~------~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI   90 (269)
                      .++...+++ ||+|++..      .+|+||||+.+|++.++++|++++. +|++++++.+||+.++....+++ |++|||
T Consensus        74 ~~~~~~~~~-g~~v~~~~~~~~~~~~G~~aEy~~v~~~~~~~iP~~l~~-~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~  150 (152)
T d1xa0a1          74 SSQHPRFRE-GDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLER-IAQEISLAELPQALKRILRGELR-GRTVVR  150 (152)
T ss_dssp             ECCSSSCCT-TCEEEEESTTBTTTBCCSSBSEEEECGGGCEECCTTHHH-HEEEEEGGGHHHHHHHHHHTCCC-SEEEEE
T ss_pred             ccCCCcccc-CCEEEEecCccccccCCCcceeeeehhhccccCCCCCCH-HHHHHHHHHHHHHHHHHHhcCCC-CCEEEE
Confidence            456677888 99997543      3589999999999999999999984 67888889899999888888885 999999


Q ss_pred             Ec
Q 024295           91 LG   92 (269)
Q Consensus        91 ~G   92 (269)
                      +|
T Consensus       151 l~  152 (152)
T d1xa0a1         151 LA  152 (152)
T ss_dssp             CC
T ss_pred             cC
Confidence            75

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=9.7e-11  Score=84.87  Aligned_cols=76  Identities=12%  Similarity=0.082  Sum_probs=61.6

Q ss_pred             cccccCCceeeeecCeEEe-eeeccCcccceEeeccCceEEcCCCCCcccccc--cccchhhhHHHHHHhcCCCCCCeEE
Q 024295           13 NGLMLDSTSRMSVRGQKLY-HIFSCSTWSEYMVIDANYVVKVDPSIDPSDASF--LSCGFTTGYGAAWKEAKVEKGSSVA   89 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~-~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~--~~~~~~~a~~~l~~~~~~~~~~~vl   89 (269)
                      +-.+|+++.++++ ||+|+ +....|+|+||++++.+.++++|++++++++++  +++...++++++.+ .++++|++||
T Consensus        68 V~~vG~~v~~~~v-GdrV~~~~~~~G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~~-~~~~~G~~VL  145 (147)
T d1qora1          68 VSKVGSGVKHIKA-GDRVVYAQSALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEILE-SRATQGSSLL  145 (147)
T ss_dssp             EEEECTTCCSCCT-TCEEEESCCSSCCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHHH-TTCCCBCCEE
T ss_pred             eeeeeeecccccc-cceeeeeccccccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEE
Confidence            4456889999999 99996 445569999999999999999999998875544  45566677777654 6789999999


Q ss_pred             E
Q 024295           90 V   90 (269)
Q Consensus        90 I   90 (269)
                      |
T Consensus       146 I  146 (147)
T d1qora1         146 I  146 (147)
T ss_dssp             E
T ss_pred             e
Confidence            7

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.5e-10  Score=85.13  Aligned_cols=78  Identities=10%  Similarity=0.083  Sum_probs=62.8

Q ss_pred             cccccCCceeeeecCeEEeee----------------------------eccCcccceEeeccCceEEcCCCCCcccccc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASF   64 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~   64 (269)
                      +-.+|+++.++++ ||+|...                            ..+|+|+||++++.++++++|++++++++++
T Consensus        75 V~~vG~~v~~~~~-GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~g~~~~~G~~aey~~~~~~~~~~lP~~~~~~~aa~  153 (185)
T d1pl8a1          75 VEKVGSSVKHLKP-GDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHR  153 (185)
T ss_dssp             EEEECTTCCSCCT-TCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCGGGEEEE
T ss_pred             EEEeccceeeecc-cccceecceeccccchhhccchhchhccceeeecccccccceEEEEEchHHEEECCCCCCHHHHHH
Confidence            3446888889999 9999632                            1247899999999999999999999999876


Q ss_pred             cccchhhhHHHHHHhcCCCCCCeEEEEcCCh
Q 024295           65 LSCGFTTGYGAAWKEAKVEKGSSVAVLGLGT   95 (269)
Q Consensus        65 ~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~   95 (269)
                      +  ++.+|++++ +..++++|++||| |+|+
T Consensus       154 ~--pl~~a~~a~-~~~~~~~G~~VlI-g~GP  180 (185)
T d1pl8a1         154 F--PLEKALEAF-ETFKKGLGLKIML-KCDP  180 (185)
T ss_dssp             E--EGGGHHHHH-HHHHTTCCSEEEE-ECCT
T ss_pred             H--HHHHHHHHH-HHhCCCCCCEEEE-EeCC
Confidence            5  466777775 5678899999998 6665

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=98.90  E-value=9.7e-10  Score=83.38  Aligned_cols=70  Identities=24%  Similarity=0.284  Sum_probs=59.8

Q ss_pred             eeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEE
Q 024295           22 RMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVL   91 (269)
Q Consensus        22 ~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~   91 (269)
                      .+...|..++++..+|+||||+++++.+++++|+++++++++.+.+++.+++.++.....-+.+++|||+
T Consensus       128 ~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~vp~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         128 RFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             SEEETTEEEBCCTTTCCSBSEEEEEGGGEEECCTTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             eeccCCcceecccccccceeEEEechHHEEECCCCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            3444577788877789999999999999999999999999999999999999998666566678888874

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.89  E-value=1.1e-09  Score=81.50  Aligned_cols=76  Identities=13%  Similarity=0.117  Sum_probs=61.5

Q ss_pred             cccccCCceeeeecCeEEeee----------------------------eccCcccceEeeccCceEEcCCCCCcccccc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASF   64 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~   64 (269)
                      +-.+|+++..+++ ||+|...                            ..+|+|+||+++++++++++|++++++.++.
T Consensus        72 V~~~G~~v~~~~~-GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~G~~~~gg~aey~~v~~~~~~~iPd~l~~~~a~~  150 (175)
T d1llua1          72 VAAVGSGVTRVKE-GDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVGILPKNVKATIHPG  150 (175)
T ss_dssp             EEEECTTCCSCCT-TCEEEECSEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTCCCCEEEE
T ss_pred             EEEeCCCcccccc-CCEEEeccccccCCccccccCCcccccccccccccccccccceEEEechHHEEECCCCCChhHHHH
Confidence            3446888899999 9998632                            1237899999999999999999999998888


Q ss_pred             cccchhhhHHHHHHhcCCCCCCeEEEE
Q 024295           65 LSCGFTTGYGAAWKEAKVEKGSSVAVL   91 (269)
Q Consensus        65 ~~~~~~~a~~~l~~~~~~~~~~~vlI~   91 (269)
                      +.+++.++++.+ +.. ..+|++|||+
T Consensus       151 ~~~~~~t~~~~~-~~g-~~~G~~VLVl  175 (175)
T d1llua1         151 KLDDINQILDQM-RAG-QIEGRIVLEM  175 (175)
T ss_dssp             CGGGHHHHHHHH-HTT-CCSSEEEEEC
T ss_pred             HHhHHHHHHHHH-HhC-CCCCCEEEeC
Confidence            888998888875 334 4479999985

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=4.9e-10  Score=84.59  Aligned_cols=56  Identities=13%  Similarity=0.213  Sum_probs=48.7

Q ss_pred             ccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEE
Q 024295           35 SCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVL   91 (269)
Q Consensus        35 ~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~   91 (269)
                      .+|+||||+++++++++++|++++++.|+++...+.+|++++ ++++++++++|||.
T Consensus       131 ~~Ggfaey~~v~~~~~~~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         131 SQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY  186 (192)
T ss_dssp             CCCSSBSEEEEEGGGEEECCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred             cccceeeEEEeehHHeEECCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence            358999999999999999999999988877665577999987 57999999999874

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.86  E-value=1.2e-09  Score=81.11  Aligned_cols=76  Identities=17%  Similarity=0.184  Sum_probs=58.4

Q ss_pred             cccccCCceeeeecCeEEeee----------------------------eccCcccceEeeccCceEEcCCCCCcccccc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHI----------------------------FSCSTWSEYMVIDANYVVKVDPSIDPSDASF   64 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~----------------------------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~   64 (269)
                      +-.+|+++..+++ ||+|...                            ..+|+||||+++++++++++|++++++.|+ 
T Consensus        67 Vv~vG~~v~~~~v-GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~A~-  144 (171)
T d1rjwa1          67 VEEVGPGVTHLKV-GDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQP-  144 (171)
T ss_dssp             EEEECTTCCSCCT-TCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTCCEEEEE-
T ss_pred             EEEecccccCcee-eeEEeeccccccccccccccCCCccccccccccceeccCccccceEecHHHEEECCCCCCHHHHH-
Confidence            4456889999999 9998521                            124899999999999999999999987665 


Q ss_pred             cccchhhhHHHHHHhcCCCCCCeEEEEcC
Q 024295           65 LSCGFTTGYGAAWKEAKVEKGSSVAVLGL   93 (269)
Q Consensus        65 ~~~~~~~a~~~l~~~~~~~~~~~vlI~G~   93 (269)
                      +. ++.++++.+. ++.+ +|++|||+|.
T Consensus       145 l~-~~~~~~~~~~-~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         145 LE-KINEVFDRML-KGQI-NGRVVLTLED  170 (171)
T ss_dssp             GG-GHHHHHHHHH-TTCC-SSEEEEECCC
T ss_pred             HH-HHHHHHHHHH-hcCC-CCCEEEEeCC
Confidence            43 4567777653 4555 5999999984

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=98.79  E-value=1.7e-11  Score=90.46  Aligned_cols=79  Identities=10%  Similarity=0.104  Sum_probs=61.1

Q ss_pred             cccc-cCCceeeeecCeEEeee------eccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCC
Q 024295           13 NGLM-LDSTSRMSVRGQKLYHI------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKG   85 (269)
Q Consensus        13 ~~~v-g~~~~~~~~~Gd~v~~~------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~   85 (269)
                      .|++ ..+..++++ |++|+..      ..+|+||||+++|++.++++|+++++++||.+++..+|||.++.. .+...+
T Consensus        69 ~G~v~~~~~~~~~~-g~~v~~~~~~~g~~~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~~~-~~~~~~  146 (162)
T d1tt7a1          69 AGTVVSSNDPRFAE-GDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSLE-ETPGAL  146 (162)
T ss_dssp             EEEEEECSSTTCCT-TCEEEEESTTBTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSEEEEECST-THHHHH
T ss_pred             cccccccccccccc-ceeeEeeeccceeccccccceEEEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCCC
Confidence            3444 345667888 9998643      345899999999999999999999999999999999999987532 334445


Q ss_pred             CeEEEEcC
Q 024295           86 SSVAVLGL   93 (269)
Q Consensus        86 ~~vlI~G~   93 (269)
                      ++|||+|+
T Consensus       147 ~~Vli~ga  154 (162)
T d1tt7a1         147 KDILQNRI  154 (162)
T ss_dssp             HHTTTTCC
T ss_pred             CEEEEECC
Confidence            67777765

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.72  E-value=7.4e-09  Score=78.17  Aligned_cols=54  Identities=22%  Similarity=0.290  Sum_probs=45.3

Q ss_pred             CcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEE
Q 024295           37 STWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGI  115 (269)
Q Consensus        37 g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~  115 (269)
                      |+|+||.++++..++++|++++++++                         +++.|+|++|++|+|+++.+|+++|+++
T Consensus       140 g~fae~~~v~~~~~~~ip~~i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         140 SSFATYALSRENNTVKVTKDFPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             CCSBSEEEEEGGGEEEECTTCCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             cccceeEEEehHHEEECCCCCCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence            68899999999999999998875543                         4456789999999999999999677765

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=98.63  E-value=3.5e-11  Score=89.98  Aligned_cols=84  Identities=10%  Similarity=0.030  Sum_probs=66.3

Q ss_pred             ccCCceeeeecCeEEeee-eccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHH-hcCCCCCCeEEEEc-
Q 024295           16 MLDSTSRMSVRGQKLYHI-FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWK-EAKVEKGSSVAVLG-   92 (269)
Q Consensus        16 vg~~~~~~~~~Gd~v~~~-~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~-~~~~~~~~~vlI~G-   92 (269)
                      .+.+++.++. ||+|+.. ...|+|+||+.+++++++++|++++.+.++  .+..+|||+++.. ..+++++++|||+| 
T Consensus        87 ~~~~~~~~~~-g~~v~~~~~~~g~~aey~~v~~~~~~~iP~~~~~~~a~--~~~~~ta~~~l~~~~~~~~~g~~vli~ga  163 (175)
T d1gu7a1          87 VGSNVSSLEA-GDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANG--KPNGLTDAKSIETLYDGTKPLHELYQDGV  163 (175)
T ss_dssp             ECTTCCSCCT-TCEEEESSSCCCCSBSEEEEEGGGEEEECCHHHHHHTT--CSCCCCCCCCEEEECCSSSCHHHHHHHHH
T ss_pred             cccccccccc-ccceeccccccccccceeeehhhhccCCCccchhhhhc--cchHHHHHHHHHHHhcCCCCCCEEEEECc
Confidence            4667777888 9998754 445899999999999999999987655544  4567788888754 46799999999997 


Q ss_pred             C-ChhHHHHHH
Q 024295           93 L-GTVGLGAVD  102 (269)
Q Consensus        93 ~-g~~G~~a~~  102 (269)
                      + |++|++++|
T Consensus       164 a~~gvG~~~iQ  174 (175)
T d1gu7a1         164 ANSKDGKQLIT  174 (175)
T ss_dssp             HTGGGSCEEEE
T ss_pred             cchhhhheEEe
Confidence            4 679987766

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=98.62  E-value=1.5e-08  Score=76.98  Aligned_cols=54  Identities=20%  Similarity=0.238  Sum_probs=45.9

Q ss_pred             cCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEc
Q 024295           36 CSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLG   92 (269)
Q Consensus        36 ~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G   92 (269)
                      .|+||||+++++..++++|++++++.++++.+++.+++.++.   .+++|++|.|+.
T Consensus       147 ~G~faey~~v~~~~l~~lP~~~~~~~~~~~~~~~~~~~~a~~---~~k~G~~V~vi~  200 (202)
T d1e3ia1         147 VSSFSQYTVVSEANLARVDDEFDLDLLVTHALPFESINDAID---LMKEGKSIRTIL  200 (202)
T ss_dssp             TCCSBSEEEEEGGGEEECCTTSCGGGGEEEEEEGGGHHHHHH---HHHTTCCSEEEE
T ss_pred             cCCceEEEEEehhhEEECCCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCEEEEEE
Confidence            389999999999999999999999988888888888887763   246788887763

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=1.1e-08  Score=73.44  Aligned_cols=56  Identities=11%  Similarity=0.096  Sum_probs=46.6

Q ss_pred             CceeeeecCeEEeee------eccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHH
Q 024295           19 STSRMSVRGQKLYHI------FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGA   75 (269)
Q Consensus        19 ~~~~~~~~Gd~v~~~------~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~   75 (269)
                      +...+++ ||+++..      ..+|+||||+++|+++++++|+++|+++||+++++..||+.+
T Consensus        73 ~~~~~~~-g~~v~~~~~~~g~~~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~tA~~~  134 (146)
T d1o89a1          73 EDPRFHA-GQEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAII  134 (146)
T ss_dssp             CSTTCCT-TCEEEEECTTBTTTBCCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHHHHHHH
T ss_pred             ccCCccc-eeeEEeecccceecCCCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            4455777 8988643      335999999999999999999999999999999888888554

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.57  E-value=3.6e-11  Score=91.69  Aligned_cols=91  Identities=10%  Similarity=-0.039  Sum_probs=67.7

Q ss_pred             cccccCCceeeeecCeEEeee-------------------------------------eccCcccceEeecc--CceEEc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHI-------------------------------------FSCSTWSEYMVIDA--NYVVKV   53 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~-------------------------------------~~~g~~a~~~~v~~--~~~~~v   53 (269)
                      +=.+|+++..+++ ||+|...                                     ..+|+|+||+++|.  .+++++
T Consensus        72 Vv~vG~~V~~~~v-GdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~~~~~~Gg~aeyv~vp~~~~~l~~i  150 (201)
T d1kola1          72 VIEKGRDVENLQI-GDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKL  150 (201)
T ss_dssp             EEEECTTCCSCCT-TCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEEC
T ss_pred             eeccccccccccc-cceeEEeeeeeccCChhhhCCCcccccccccccccccccccCCCccccccccEEEeehHHCeEEEC
Confidence            3456889999999 9998521                                     12489999999975  479999


Q ss_pred             CCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC
Q 024295           54 DPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA  109 (269)
Q Consensus        54 p~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~  109 (269)
                      |++.+..+++++..++.++++++. ..+.+.+    ++|+|++|+.++|+||.+|+
T Consensus       151 Pd~~~~~~~~~~~~~~~~~~~a~~-~~~~~~g----~~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         151 PDRDKAMEKINIAEVVGVQVISLD-DAPRGYG----EFDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             SCHHHHHHTCCHHHHHTEEEECGG-GHHHHHH----HHHHTCSCEEEECTTCSSCC
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHH-hCCCCCe----EEeeCHHHHHHHHHHHHcCC
Confidence            998666666667667888887753 3333323    35889999999999998875

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.38  E-value=9e-07  Score=63.84  Aligned_cols=98  Identities=19%  Similarity=0.189  Sum_probs=73.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC--ceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM--TDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      +..+|+|+|+|..|+.|+..|+.+|+ +|.+.|.+.++++.++....  .......+   ..+.+.++      ..|+|+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~---~~l~~~~~------~aDivI  100 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNS---AEIETAVA------EADLLI  100 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCH---HHHHHHHH------TCSEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcccceeehhhh---hhHHHhhc------cCcEEE
Confidence            45789999999999999999999999 99999999999998877432  12222222   34444443      689999


Q ss_pred             EccC---Chh---HHHHHHHHcccCCcEEEEEccCCC
Q 024295          162 ECTG---VPS---LLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       162 d~~g---~~~---~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                      .++-   .++   .-+++++.+++| +.+|.+....+
T Consensus       101 ~aalipG~~aP~lIt~~mv~~Mk~G-SVIVDvaidqG  136 (168)
T d1pjca1         101 GAVLVPGRRAPILVPASLVEQMRTG-SVIVDVAVDQG  136 (168)
T ss_dssp             ECCCCTTSSCCCCBCHHHHTTSCTT-CEEEETTCTTC
T ss_pred             EeeecCCcccCeeecHHHHhhcCCC-cEEEEeecCCC
Confidence            9883   221   257899999997 99999976554

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.35  E-value=2e-06  Score=62.92  Aligned_cols=105  Identities=26%  Similarity=0.327  Sum_probs=75.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCC-----------------CCCccHHH
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDD-----------------EPNKSISE  146 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~-----------------~~~~~~~~  146 (269)
                      +..+|+|+|+|..|+.|+..|+.+|+ +|.+.|.++++++.+++++...+....+                 .......+
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            35689999999999999999999999 9999999999999999988654421100                 00011122


Q ss_pred             HHHhhhCCCCccEEEEcc---CChh---HHHHHHHHcccCCcEEEEEccCCC
Q 024295          147 LVKGITHGMGVDYCFECT---GVPS---LLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       147 ~i~~~~~~~~~d~v~d~~---g~~~---~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                      .+.+...  ..|+|+-++   |.++   .-+++++.+++| +.+|.+....+
T Consensus       107 ~l~~~l~--~aDlVI~talipG~~aP~lit~~mv~~Mk~G-SVIVDvaidqG  155 (183)
T d1l7da1         107 AVLKELV--KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEAG  155 (183)
T ss_dssp             HHHHHHT--TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGGT
T ss_pred             HHHHHHH--hhhhheeeeecCCcccceeehHHHHHhcCCC-cEEEEEeecCC
Confidence            2333222  689999887   3221   257899999997 99999976544

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.31  E-value=3.1e-07  Score=69.95  Aligned_cols=114  Identities=20%  Similarity=0.249  Sum_probs=78.2

Q ss_pred             ccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCceeeCCC
Q 024295           62 ASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTDFINPD  137 (269)
Q Consensus        62 aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v~~~~  137 (269)
                      .-.+..+...|.  +.+...++++++||.+|+|+ |+.++.+++..|. +|++++.+++-.+.+    +++|.+.+....
T Consensus        58 g~~is~P~~~a~--ml~~L~l~~g~~VLeIGsGs-GY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~  133 (215)
T d1jg1a_          58 GQTVSAPHMVAI--MLEIANLKPGMNILEVGTGS-GWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNVHVIL  133 (215)
T ss_dssp             TCEECCHHHHHH--HHHHHTCCTTCCEEEECCTT-SHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             hhhhhhhhhHHH--HHHhhccCccceEEEecCCC-ChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCCceeEEEE
Confidence            334554655553  45778999999999999987 9999999998886 899999887655555    446654433222


Q ss_pred             CCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295          138 DEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       138 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                          .+..   ..+.....||.|+-+.+.+..-...++.|++| |+++..
T Consensus       134 ----gd~~---~g~~~~~pfD~Iiv~~a~~~ip~~l~~qL~~g-GrLv~p  175 (215)
T d1jg1a_         134 ----GDGS---KGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIP  175 (215)
T ss_dssp             ----SCGG---GCCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             ----Cccc---cCCcccCcceeEEeecccccCCHHHHHhcCCC-CEEEEE
Confidence                1111   11222348999987665544457789999996 999874

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.29  E-value=3.9e-07  Score=67.50  Aligned_cols=74  Identities=14%  Similarity=0.086  Sum_probs=53.1

Q ss_pred             ccccCCceeeeecCeEEeee---------------------------eccCcccceEeeccC-ceEEcCCCCCccccccc
Q 024295           14 GLMLDSTSRMSVRGQKLYHI---------------------------FSCSTWSEYMVIDAN-YVVKVDPSIDPSDASFL   65 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~---------------------------~~~g~~a~~~~v~~~-~~~~vp~~~~~~~aa~~   65 (269)
                      -.+|+++.++++ ||+|...                           ..+|+||||+++++. .++++|+..+.+.++..
T Consensus        75 ~~~g~~v~~~~~-GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~g~~~~G~~aey~~vp~~~~~~~~~~~~~~~~a~~~  153 (177)
T d1jvba1          75 EEVGDEVVGYSK-GDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMK  153 (177)
T ss_dssp             EEECTTCCSCCT-TCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEECSSSCCCCEEEEE
T ss_pred             eeeccCcccccc-CceEeeeeccccccccccccccccccCCcceeeeccccccccEEEEEhHHeEEECCCCChHHHHHHH
Confidence            346888888999 9998632                           123899999999765 46677765555555555


Q ss_pred             ccchhhhHHHHHHhcCCCCCCeEEE
Q 024295           66 SCGFTTGYGAAWKEAKVEKGSSVAV   90 (269)
Q Consensus        66 ~~~~~~a~~~l~~~~~~~~~~~vlI   90 (269)
                      ..++.+|++++ +.+++ .|++|||
T Consensus       154 ~~~~~~a~~~~-~~~~~-~G~~VlI  176 (177)
T d1jvba1         154 LEEANEAIDNL-ENFKA-IGRQVLI  176 (177)
T ss_dssp             GGGHHHHHHHH-HTTCC-CSEEEEE
T ss_pred             HHHHHHHHHHH-Hhhcc-cCCceEC
Confidence            56888999886 45555 5888987

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=98.27  E-value=4.8e-07  Score=67.23  Aligned_cols=49  Identities=18%  Similarity=0.177  Sum_probs=41.2

Q ss_pred             cCcccceEeec-cCceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEE
Q 024295           36 CSTWSEYMVID-ANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVL   91 (269)
Q Consensus        36 ~g~~a~~~~v~-~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~   91 (269)
                      +|+||||++++ +.+++++|++++.++      ++.+|++++ +++.+++|++|||+
T Consensus       133 ~Gg~ae~~~v~~~~~v~~ip~~l~~~~------pl~~A~~a~-~~~~~~~G~~VlI~  182 (184)
T d1vj0a1         133 RGCYSSHIVLDPETDVLKVSEKITHRL------PLKEANKAL-ELMESREALKVILY  182 (184)
T ss_dssp             CSSSBSEEEECTTCCEEEECTTCCEEE------EGGGHHHHH-HHHHHTSCSCEEEE
T ss_pred             ceeCcCcEEechhHcEEECCCCCCHHH------HHHHHHHHH-HHhCCCcCCEEEEe
Confidence            58999999995 579999999998652      466788875 67899999999997

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=98.23  E-value=1.1e-08  Score=75.88  Aligned_cols=76  Identities=11%  Similarity=0.111  Sum_probs=53.7

Q ss_pred             cccccCCceeeeecCeEEeee------------------------------eccCcccceEeecc--CceEEcCCCCCcc
Q 024295           13 NGLMLDSTSRMSVRGQKLYHI------------------------------FSCSTWSEYMVIDA--NYVVKVDPSIDPS   60 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~------------------------------~~~g~~a~~~~v~~--~~~~~vp~~~~~~   60 (269)
                      +-.+|+++.++++ ||+|...                              ..+|+||||+++|.  .+++++|++++++
T Consensus        65 V~~vG~~v~~~~v-GdrV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G~~aEy~~vp~a~~~l~~iP~~~~~~  143 (177)
T d1jqba1          65 VVEVGSEVKDFKP-GDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDVDLS  143 (177)
T ss_dssp             EEEECTTCCSCCT-TCEEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCCSSBSSEEESSHHHHCEECCTTSCGG
T ss_pred             eeecccccceecC-CCcEEEeeeeccccccchhhhhhcccccccccccccCCCChhcCeeEEEEhhhCeEEECCCCcchH
Confidence            3446899999999 9999521                              13489999999986  4789999999988


Q ss_pred             cccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHH
Q 024295           61 DASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGA  100 (269)
Q Consensus        61 ~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a  100 (269)
                      +++....   +++..+        ++.+|++|+|++|+.+
T Consensus       144 ~~~~~~~---~~~~~~--------~~~vlv~g~gp~gl~a  172 (177)
T d1jqba1         144 KLVTHVY---HGFDHI--------EEALLLMKDKPKDLIK  172 (177)
T ss_dssp             GGEEEEE---ESGGGH--------HHHHHHHHHCCTTCSE
T ss_pred             HHHHHHH---HHHHHh--------cCceEEECCCHHHhhe
Confidence            7765432   233322        2347777888877644

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.21  E-value=2.9e-07  Score=70.32  Aligned_cols=109  Identities=23%  Similarity=0.224  Sum_probs=73.7

Q ss_pred             chhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHh----CCCceeeCCCCCCCc
Q 024295           68 GFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAA-KIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNK  142 (269)
Q Consensus        68 ~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~-~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~  142 (269)
                      +...|.  +.+...++++++||.+|+|+ |..++.+++..|.+ +|++++.+++..+.+++    .+...+....    .
T Consensus        61 P~~~a~--~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~----~  133 (213)
T d1dl5a1          61 PSLMAL--FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVC----G  133 (213)
T ss_dssp             HHHHHH--HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE----S
T ss_pred             chhhHH--HHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccccccccc----C
Confidence            444443  45778999999999999987 99999999988743 89999999887777755    3332221111    1


Q ss_pred             cHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295          143 SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       143 ~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      +..   ..+.....||+|+...+.....+.+++.|++| |+++..
T Consensus       134 d~~---~~~~~~~~fD~I~~~~~~~~~p~~l~~~LkpG-G~lv~p  174 (213)
T d1dl5a1         134 DGY---YGVPEFSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP  174 (213)
T ss_dssp             CGG---GCCGGGCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEEE
T ss_pred             chH---HccccccchhhhhhhccHHHhHHHHHHhcCCC-cEEEEE
Confidence            110   01112237999987665443446788999996 999773

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=98.14  E-value=2.3e-06  Score=64.40  Aligned_cols=87  Identities=29%  Similarity=0.437  Sum_probs=62.0

Q ss_pred             CCCCCCCcccc-cccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhc
Q 024295            2 TNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEA   80 (269)
Q Consensus         2 ~~~c~~~~~~~-~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~   80 (269)
                      ++.|.....+. .+..+.....+...|..+..+...|+|+||+++++.+++++|+.++++.++...+++.....   ...
T Consensus       108 ~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~~~p~~~~~e~l~~~~~~~~~v~~---g~~  184 (198)
T d2jhfa1         108 GNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALDPLITHVLPFEKINE---GFD  184 (198)
T ss_dssp             CCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEECCTTSCCGGGEEEEEEGGGHHH---HHH
T ss_pred             cceeccccccccCccccCccccccccCceeccCCCCCcccCeEEeCHHHeEECCCCCCHHHHHHHHHHHHhhhh---CCc
Confidence            34566655544 55566666667666888876667799999999999999999999998777665555443322   223


Q ss_pred             CCCCCCeEEEE
Q 024295           81 KVEKGSSVAVL   91 (269)
Q Consensus        81 ~~~~~~~vlI~   91 (269)
                      .+++|++|+|+
T Consensus       185 ~l~~G~~VaVi  195 (198)
T d2jhfa1         185 LLRSGESIRTI  195 (198)
T ss_dssp             HHHTTCCSEEE
T ss_pred             eeeCCCEEEEE
Confidence            46788888876

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=98.09  E-value=2.8e-06  Score=60.46  Aligned_cols=71  Identities=11%  Similarity=0.129  Sum_probs=52.3

Q ss_pred             ccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcc-----cccccccchhhh-HHHHHHhcCCCCCCe
Q 024295           14 GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPS-----DASFLSCGFTTG-YGAAWKEAKVEKGSS   87 (269)
Q Consensus        14 ~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~-----~aa~~~~~~~~a-~~~l~~~~~~~~~~~   87 (269)
                      .++.++.++|++ ||+|++.   ++||||.+++.+.+.++|+.++..     ..+++....+|| |..+..  .-+.|++
T Consensus        70 ~Vv~S~~~~f~~-GD~V~g~---~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~~--~~k~Get  143 (147)
T d1v3va1          70 RVVESKNSAFPA-GSIVLAQ---SGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEMLN--GANLGKA  143 (147)
T ss_dssp             EEEEESCTTSCT-TCEEEEC---CCSBSEEEECSSSCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHHHT--TCCSSEE
T ss_pred             EEEEeCCCcccC-CCEEEEc---cCCEeEEEeccceeeEccccccccccchhhhHhccccchHHHHHHhhC--CCCCCCE
Confidence            356778888999 9999875   679999999999999998765433     344566666664 445543  3467999


Q ss_pred             EEE
Q 024295           88 VAV   90 (269)
Q Consensus        88 vlI   90 (269)
                      |++
T Consensus       144 vv~  146 (147)
T d1v3va1         144 VVT  146 (147)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            886

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=98.07  E-value=1.2e-05  Score=58.52  Aligned_cols=73  Identities=21%  Similarity=0.203  Sum_probs=56.6

Q ss_pred             HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCC
Q 024295           77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      .+...+.++++|||+|+|+.+.+++..++..|++++..+.|+.++.+.+.+ ++... ++...               ..
T Consensus         9 l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~-~~~~~---------------~~   72 (167)
T d1npya1           9 IEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAY-INSLE---------------NQ   72 (167)
T ss_dssp             HHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEE-ESCCT---------------TC
T ss_pred             HHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhh-hhccc---------------cc
Confidence            456677788999999999999999999999999899999999988777654 55433 22221               12


Q ss_pred             CccEEEEccC
Q 024295          156 GVDYCFECTG  165 (269)
Q Consensus       156 ~~d~v~d~~g  165 (269)
                      .+|++++|+.
T Consensus        73 ~~DliINaTp   82 (167)
T d1npya1          73 QADILVNVTS   82 (167)
T ss_dssp             CCSEEEECSS
T ss_pred             chhhheeccc
Confidence            7899999984

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=98.05  E-value=1.3e-06  Score=65.77  Aligned_cols=87  Identities=30%  Similarity=0.500  Sum_probs=60.8

Q ss_pred             CCCCCCCcccc-cccccCCceeeeecCeEEeeeeccCcccceEeeccCceEEcCCCCCcccccccccchhhhHHHHHHhc
Q 024295            2 TNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCGFTTGYGAAWKEA   80 (269)
Q Consensus         2 ~~~c~~~~~~~-~~~vg~~~~~~~~~Gd~v~~~~~~g~~a~~~~v~~~~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~   80 (269)
                      +++|....... .+..+.....+...|+.++.+..+|+|+||+.+++..++++|++++++.++...+.+.+         
T Consensus       108 ~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~kip~~~~~~~~~~~~~~~~~---------  178 (198)
T d1p0fa1         108 SNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTLDQ---------  178 (198)
T ss_dssp             CCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEECTTSCGGGGEEEEECGGG---------
T ss_pred             cccchhhhccccccccCCCceeEeeCCeeccccCCCccceeeEEecHHHEEECCCCCCHHHHHHhhcchhh---------
Confidence            45665554433 44555555666666888877777799999999999999999999997776654433322         


Q ss_pred             CCCCCCeEEEEcCChhHH
Q 024295           81 KVEKGSSVAVLGLGTVGL   98 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~   98 (269)
                       +.++.+|||.|+|++|+
T Consensus       179 -v~~~~~vlv~G~G~iGl  195 (198)
T d1p0fa1         179 -INKAFELLSSGQGVRSI  195 (198)
T ss_dssp             -HHHHHHHTTTSSCSEEE
T ss_pred             -cCCCCEEEEECCCcceE
Confidence             22344588889988875

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.99  E-value=1.7e-06  Score=67.26  Aligned_cols=103  Identities=10%  Similarity=0.042  Sum_probs=70.4

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHh----CC-CceeeCCCCCCCccHHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAA-KIIGIDKNPWKKEKGKA----FG-MTDFINPDDEPNKSISELVK  149 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~-~v~~~~~~~~~~~~~~~----~g-~~~v~~~~~~~~~~~~~~i~  149 (269)
                      +....+++||++||-.|+|+ |.++..+|+..|.. +|++++.+++..+.+++    ++ ...+- ...   .++    .
T Consensus        77 Ii~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~-~~~---~Di----~  147 (250)
T d1yb2a1          77 IIMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVR-TSR---SDI----A  147 (250)
T ss_dssp             ----CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEE-EEC---SCT----T
T ss_pred             HHHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceE-EEE---eee----e
Confidence            34578999999999999987 88889999987643 89999999988888765    22 22211 111   222    1


Q ss_pred             hhhCCCCccEEEEcc-CChhHHHHHHHHcccCCcEEEEEc
Q 024295          150 GITHGMGVDYCFECT-GVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       150 ~~~~~~~~d~v~d~~-g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +...+..||.|+--. .....+..+.+.|++| |+++.+.
T Consensus       148 ~~~~~~~fD~V~ld~p~p~~~l~~~~~~LKpG-G~lv~~~  186 (250)
T d1yb2a1         148 DFISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYL  186 (250)
T ss_dssp             TCCCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEE
T ss_pred             cccccceeeeeeecCCchHHHHHHHHHhcCCC-ceEEEEe
Confidence            222334799887444 3334689999999997 9998874

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.95  E-value=3.4e-05  Score=60.39  Aligned_cols=104  Identities=19%  Similarity=0.243  Sum_probs=74.9

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHh
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAA-KIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKG  150 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~-~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~  150 (269)
                      +...+++++|++||-.|+|+ |..+..+|+..+.. +|++++.+++..+.+++    +|....+....   .+.    ..
T Consensus        95 Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~---~d~----~~  166 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKV---RDI----SE  166 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEEC---CCG----GG
T ss_pred             HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEe---ccc----cc
Confidence            56789999999999999987 88899999988643 89999999988888755    45321111111   121    12


Q ss_pred             hhCCCCccEEEEccCCh-hHHHHHHHHcccCCcEEEEEc
Q 024295          151 ITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       151 ~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ..+...+|.|+--+..+ ..++.+.+.|++| |+++.+.
T Consensus       167 ~~~~~~~D~V~~d~p~p~~~l~~~~~~LKpG-G~lv~~~  204 (266)
T d1o54a_         167 GFDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVC  204 (266)
T ss_dssp             CCSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEE
T ss_pred             cccccceeeeEecCCCHHHHHHHHHhhcCCC-CEEEEEe
Confidence            23344789887655543 4689999999997 9998774

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.93  E-value=1.4e-05  Score=61.00  Aligned_cols=108  Identities=20%  Similarity=0.205  Sum_probs=72.5

Q ss_pred             cccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-C---CceeeCCCCCC
Q 024295           65 LSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-G---MTDFINPDDEP  140 (269)
Q Consensus        65 ~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g---~~~v~~~~~~~  140 (269)
                      +..+...|.  +.+...++++++||-+|+|. |..++.+++. +. +|++++.+++..+.+++. .   ...++..+   
T Consensus        53 ~~~p~~~a~--ml~~L~l~~g~~VLdIG~Gs-Gy~ta~La~l-~~-~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d---  124 (224)
T d1vbfa_          53 TTALNLGIF--MLDELDLHKGQKVLEIGTGI-GYYTALIAEI-VD-KVVSVEINEKMYNYASKLLSYYNNIKLILGD---  124 (224)
T ss_dssp             ECCHHHHHH--HHHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHTTCSSEEEEESC---
T ss_pred             eehhhhHHH--HHHHhhhcccceEEEecCCC-CHHHHHHHHH-hc-ccccccccHHHHHHHHHHHhcccccccccCc---
Confidence            333444443  45778999999999999985 8888888886 44 899999999888877663 1   11222111   


Q ss_pred             CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295          141 NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       141 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                         ..   ..+.....||.|+-+.+.+......++.|++| |++|..
T Consensus       125 ---~~---~g~~~~~pfD~Iiv~~a~~~ip~~l~~qLk~G-GrLV~p  164 (224)
T d1vbfa_         125 ---GT---LGYEEEKPYDRVVVWATAPTLLCKPYEQLKEG-GIMILP  164 (224)
T ss_dssp             ---GG---GCCGGGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             ---hh---hcchhhhhHHHHHhhcchhhhhHHHHHhcCCC-CEEEEE
Confidence               10   01112237999886555444456788999996 998875

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.91  E-value=4.4e-05  Score=54.91  Aligned_cols=78  Identities=14%  Similarity=0.212  Sum_probs=58.8

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHH-HHHhCCCceeeCCCCCCCccHHHHHHhhhCCCC
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKE-KGKAFGMTDFINPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      +...--.+.++||+|+|.+|.+.++.+...|+++++++.|+.++.+ .++++|.. ...+     +++.+.+.      .
T Consensus        17 ~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~-~~~~-----~~~~~~l~------~   84 (159)
T d1gpja2          17 RELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE-AVRF-----DELVDHLA------R   84 (159)
T ss_dssp             HHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE-ECCG-----GGHHHHHH------T
T ss_pred             HHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcc-cccc-----hhHHHHhc------c
Confidence            3333447899999999999999999999999988999999977765 45667744 3333     34544443      7


Q ss_pred             ccEEEEccCCh
Q 024295          157 VDYCFECTGVP  167 (269)
Q Consensus       157 ~d~v~d~~g~~  167 (269)
                      +|+||.|++.+
T Consensus        85 ~Divi~atss~   95 (159)
T d1gpja2          85 SDVVVSATAAP   95 (159)
T ss_dssp             CSEEEECCSSS
T ss_pred             CCEEEEecCCC
Confidence            99999999764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=3.4e-06  Score=64.64  Aligned_cols=112  Identities=21%  Similarity=0.260  Sum_probs=73.4

Q ss_pred             cccccchhhhHHHHHHhc--CCCCCCeEEEEcCChhHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHh----CCCc----
Q 024295           63 SFLSCGFTTGYGAAWKEA--KVEKGSSVAVLGLGTVGLGAVDGARMHGAA-KIIGIDKNPWKKEKGKA----FGMT----  131 (269)
Q Consensus        63 a~~~~~~~~a~~~l~~~~--~~~~~~~vlI~G~g~~G~~a~~la~~~g~~-~v~~~~~~~~~~~~~~~----~g~~----  131 (269)
                      ..+..+...|.  +.+..  .+++|++||.+|+|+ |..++.+++..|.. +|++++.+++-.+.+++    .+..    
T Consensus        55 ~~is~P~~~a~--~le~L~~~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~  131 (224)
T d1i1na_          55 ATISAPHMHAY--ALELLFDQLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSS  131 (224)
T ss_dssp             EEECCHHHHHH--HHHHTTTTSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHT
T ss_pred             hhhhhhHHHHH--HHHHHhhccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccc
Confidence            33444554443  33433  789999999999987 99999999987643 89999999877766643    2211    


Q ss_pred             ---eeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295          132 ---DFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       132 ---~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                         .+..      .+.   ...+.+...||+|+-+...+...+.+++.|++| |++|..
T Consensus       132 ~~~~~~~------gD~---~~~~~~~~~fD~I~~~~~~~~ip~~l~~~LkpG-G~LV~p  180 (224)
T d1i1na_         132 GRVQLVV------GDG---RMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILP  180 (224)
T ss_dssp             SSEEEEE------SCG---GGCCGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             cceEEEE------eec---ccccchhhhhhhhhhhcchhhcCHHHHhhcCCC-cEEEEE
Confidence               1111      111   011122337999987665544557889999996 999874

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.87  E-value=0.00011  Score=56.99  Aligned_cols=95  Identities=23%  Similarity=0.360  Sum_probs=64.8

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-eeeCCCCCCCccHHHHHHhhhCCC
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      ..+++++||-+|+|+ |..++.+++ .|+ +|+++|.+++..+.+++    .+.. .++.      .+..+.    .+..
T Consensus       117 ~~~~g~~VLDiGcGs-G~l~i~aa~-~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~------~d~~~~----~~~~  183 (254)
T d2nxca1         117 HLRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLE------GSLEAA----LPFG  183 (254)
T ss_dssp             HCCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEE------SCHHHH----GGGC
T ss_pred             hcCccCEEEEcccch-hHHHHHHHh-cCC-EEEEEECChHHHHHHHHHHHHcCCceeEEe------cccccc----cccc
Confidence            367899999999986 777776655 688 89999999988887764    3432 2221      223222    2223


Q ss_pred             CccEEEEccCCh---hHHHHHHHHcccCCcEEEEEcc
Q 024295          156 GVDYCFECTGVP---SLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       156 ~~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      .||+|+-.....   ..+..+.+.++|| |++++.|.
T Consensus       184 ~fD~V~ani~~~~l~~l~~~~~~~LkpG-G~lilSgi  219 (254)
T d2nxca1         184 PFDLLVANLYAELHAALAPRYREALVPG-GRALLTGI  219 (254)
T ss_dssp             CEEEEEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             ccchhhhccccccHHHHHHHHHHhcCCC-cEEEEEec
Confidence            899998655332   2356777899996 99988664

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=4.6e-06  Score=64.76  Aligned_cols=105  Identities=19%  Similarity=0.222  Sum_probs=71.7

Q ss_pred             HHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHH
Q 024295           74 GAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVK  149 (269)
Q Consensus        74 ~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~  149 (269)
                      ..+....+++++++||-+|+|. |..+..+++..|+ +|++++.+++..+.+++    .|...-+....   .+.    .
T Consensus        23 ~~l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~---~d~----~   93 (245)
T d1nkva_          23 ATLGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIH---NDA----A   93 (245)
T ss_dssp             HHHHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE---SCC----T
T ss_pred             HHHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhccccchhhh---hHH----h
Confidence            3466788999999999999986 7778888888898 99999999887776654    45321111111   111    1


Q ss_pred             hhhCCCCccEEEEcc------CChhHHHHHHHHcccCCcEEEEEc
Q 024295          150 GITHGMGVDYCFECT------GVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       150 ~~~~~~~~d~v~d~~------g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ++.....||+|+-.-      .-...+..+.+.|+|| |+++...
T Consensus        94 ~~~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPG-G~l~i~~  137 (245)
T d1nkva_          94 GYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIGE  137 (245)
T ss_dssp             TCCCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEEE
T ss_pred             hccccCceeEEEEEehhhccCCHHHHHHHHHHHcCcC-cEEEEEe
Confidence            122234899887421      2244688899999996 9987753

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.74  E-value=6e-05  Score=59.74  Aligned_cols=101  Identities=14%  Similarity=0.118  Sum_probs=70.3

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhh
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      +.+++++++|++||-+|+|- |..+..+|+..|+ +|++++.+++..+.+++    .|....+....   .+.    + .
T Consensus        53 ~~~~l~l~~G~~VLDiGCG~-G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~---~d~----~-~  122 (291)
T d1kpia_          53 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI---QGW----E-E  122 (291)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEE---CCG----G-G
T ss_pred             HHHhcCCCCCCEEEEecCcc-hHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhh---hcc----c-c
Confidence            56788999999999999975 6678889999999 99999999987666543    45332221111   111    1 1


Q ss_pred             hCCCCccEEEE-----ccCC----------hhHHHHHHHHcccCCcEEEEEc
Q 024295          152 THGMGVDYCFE-----CTGV----------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       152 ~~~~~~d~v~d-----~~g~----------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .++ .||.|+.     .++.          +..++.+.+.|+|| |++++-.
T Consensus       123 ~~~-~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkpg-G~~~l~~  172 (291)
T d1kpia_         123 FDE-PVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHT  172 (291)
T ss_dssp             CCC-CCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTT-CEEEEEE
T ss_pred             ccc-ccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCC-CceEEEE
Confidence            123 7998853     3333          24688899999997 9988654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.72  E-value=0.00016  Score=56.13  Aligned_cols=108  Identities=17%  Similarity=0.141  Sum_probs=69.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCceeeCCCCCCCc-cHHHHHHhhhC-CCCccE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDFINPDDEPNK-SISELVKGITH-GMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~-~~~~~i~~~~~-~~~~d~  159 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++...+.-.-+.++. +..+.+.+... -.++|+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDi   83 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCe
Confidence            6889999986 8999999999999999 999999998887765 44664332211111112 22222222211 127999


Q ss_pred             EEEccCChh-------------------------HHHHHHHHcccCCcEEEEEccCCC
Q 024295          160 CFECTGVPS-------------------------LLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       160 v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                      +++++|...                         ..+.++..++..+|+++.++....
T Consensus        84 lVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~  141 (253)
T d1hxha_          84 LVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSS  141 (253)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGG
T ss_pred             EEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhh
Confidence            999997511                         234555566542499999986543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.70  E-value=0.00011  Score=54.42  Aligned_cols=99  Identities=10%  Similarity=-0.029  Sum_probs=66.5

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC--c----------------eeeCCCCC
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM--T----------------DFINPDDE  139 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~--~----------------~v~~~~~~  139 (269)
                      ....+.++.+||.+|+|. |..+..+|+. |+ +|+++|.+++..+.+++...  .                .++..+- 
T Consensus        14 ~~l~~~~~~rvLd~GCG~-G~~a~~la~~-G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-   89 (201)
T d1pjza_          14 SSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF-   89 (201)
T ss_dssp             HHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC-
T ss_pred             HHcCCCCCCEEEEecCcC-CHHHHHHHHc-CC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc-
Confidence            445788999999999987 8889988875 99 99999999999988876311  0                0110000 


Q ss_pred             CCccHHHHHHhhhCCCCccEEEEccCC--------hhHHHHHHHHcccCCcEEEEEc
Q 024295          140 PNKSISELVKGITHGMGVDYCFECTGV--------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       140 ~~~~~~~~i~~~~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                        .++....     ...+|+|++....        ...+..+.+.+++| |+++...
T Consensus        90 --~~l~~~~-----~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkpg-G~l~l~~  138 (201)
T d1pjza_          90 --FALTARD-----IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLIT  138 (201)
T ss_dssp             --SSSTHHH-----HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEEE
T ss_pred             --ccccccc-----ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCC-cEEEEEE
Confidence              1111111     1268998875431        23567888999996 9876543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.68  E-value=2.1e-05  Score=62.34  Aligned_cols=101  Identities=13%  Similarity=0.088  Sum_probs=70.7

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhh
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      +.+++++++|++||-+|+|- |..++.+++..|+ +|++++.+++..+.+++    .|...-+....   .++    +++
T Consensus        54 ~~~~l~l~~G~~VLDiGCG~-G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~---~d~----~~~  124 (285)
T d1kpga_          54 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLL---AGW----EQF  124 (285)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEE---SCG----GGC
T ss_pred             HHHHcCCCCCCEEEEecCcc-hHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHH---hhh----hcc
Confidence            56788999999999999986 8889999999999 99999999988888755    23111111000   111    122


Q ss_pred             hCCCCccEEE-----EccCC---hhHHHHHHHHcccCCcEEEEEc
Q 024295          152 THGMGVDYCF-----ECTGV---PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       152 ~~~~~~d~v~-----d~~g~---~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                       ++ .+|.++     +.++.   ...+..+.+.|+|| |++++..
T Consensus       125 -~~-~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg-G~~~l~~  166 (285)
T d1kpga_         125 -DE-PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHT  166 (285)
T ss_dssp             -CC-CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             -cc-cccceeeehhhhhcCchhHHHHHHHHHhhcCCC-CcEEEEE
Confidence             23 788774     34443   24578899999997 9988644

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.68  E-value=1.9e-05  Score=62.40  Aligned_cols=100  Identities=11%  Similarity=0.149  Sum_probs=68.9

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhh
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      +.++.++++|++||-+|+|. |..+..+++..|+ +|++++.+++..+.+++    .|....+....   .+.    ++.
T Consensus        44 ~~~~l~l~~g~~VLDiGCG~-G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~---~d~----~~~  114 (280)
T d2fk8a1          44 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLL---QGW----EDF  114 (280)
T ss_dssp             HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE---SCG----GGC
T ss_pred             HHHHcCCCCCCEEEEecCCc-hHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhh---hhh----hhh
Confidence            56778899999999999986 5667788888899 99999999988887755    34221111110   111    111


Q ss_pred             hCCCCccEEEE-----ccCC---hhHHHHHHHHcccCCcEEEEE
Q 024295          152 THGMGVDYCFE-----CTGV---PSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       152 ~~~~~~d~v~d-----~~g~---~~~~~~~~~~l~~~~G~~v~~  187 (269)
                       ++ .||.|+-     .++.   +..++.+.+.|+|| |+++.-
T Consensus       115 -~~-~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg-G~~~i~  155 (280)
T d2fk8a1         115 -AE-PVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQ  155 (280)
T ss_dssp             -CC-CCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEE
T ss_pred             -cc-chhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC-ceEEEE
Confidence             23 7898843     3343   23578899999997 999764

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.66  E-value=0.00026  Score=55.05  Aligned_cols=120  Identities=14%  Similarity=0.099  Sum_probs=79.7

Q ss_pred             CcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHh----C--C-
Q 024295           58 DPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAA-KIIGIDKNPWKKEKGKA----F--G-  129 (269)
Q Consensus        58 ~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~-~v~~~~~~~~~~~~~~~----~--g-  129 (269)
                      .+.+.+-+..+-=.+  .+....+++||++||-.|+|+ |.++..+|+..|.+ +|++++.+++..+.+++    +  + 
T Consensus        72 ~~~r~tqiiypkD~s--~Ii~~l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~  148 (264)
T d1i9ga_          72 SMPRGPQVIYPKDAA--QIVHEGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP  148 (264)
T ss_dssp             TSCSCSCCCCHHHHH--HHHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC
T ss_pred             hccCCccccchHHHH--HHHHHhCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCC
Confidence            344444443333223  356788999999999999987 99999999998754 99999999988888765    1  1 


Q ss_pred             CceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC-hhHHHHHHHHcccCCcEEEEEc
Q 024295          130 MTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV-PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       130 ~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~-~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .+.+....    .+..+   ...++..||.||--+.. ...+..+.+.|++| |+++.+-
T Consensus       149 ~~nv~~~~----~d~~~---~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpG-G~lv~~~  200 (264)
T d1i9ga_         149 PDNWRLVV----SDLAD---SELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYV  200 (264)
T ss_dssp             CTTEEEEC----SCGGG---CCCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEE
T ss_pred             CceEEEEe----ccccc---ccccCCCcceEEEecCCHHHHHHHHHhccCCC-CEEEEEe
Confidence            12211111    11111   11223489977644443 34688999999996 9998875

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=0.00013  Score=53.05  Aligned_cols=77  Identities=13%  Similarity=0.173  Sum_probs=54.0

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CC---CceeeCCCCCCCccHHHHHHhh
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FG---MTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g---~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      |.+..-..++++|||+|+|+.+.+++..+...|+ +++.+.|+.++.+.+.+ +.   ....+...+            .
T Consensus         9 l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~------------~   75 (170)
T d1nyta1           9 LERLSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALSMDE------------L   75 (170)
T ss_dssp             HHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECCSGG------------G
T ss_pred             HHHcCCCCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHHHHHhhccccccccccc------------c
Confidence            4333334578999999999999999999899999 79999999888776544 33   222222211            1


Q ss_pred             hCCCCccEEEEccCC
Q 024295          152 THGMGVDYCFECTGV  166 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~  166 (269)
                       ....+|++++|+..
T Consensus        76 -~~~~~dliIN~Tp~   89 (170)
T d1nyta1          76 -EGHEFDLIINATSS   89 (170)
T ss_dssp             -TTCCCSEEEECCSC
T ss_pred             -cccccceeeccccc
Confidence             12378999999853

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.64  E-value=0.00029  Score=52.10  Aligned_cols=78  Identities=17%  Similarity=0.221  Sum_probs=55.1

Q ss_pred             cCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C----CC-ceeeCCCCCCCccHHHHHHhhh
Q 024295           80 AKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F----GM-TDFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        80 ~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~----g~-~~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      ..--+++++||+|+ |++|...++.+...|+ +|+.++|++++.+.+.+ +    .. ....+..+   .   +.+.+..
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~---~---~~~~~~~   90 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD---D---ASRAEAV   90 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS---H---HHHHHHT
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhccchhhhhhhccc---H---HHHHHHh
Confidence            33448999999985 9999999999999999 99999999988776543 2    21 22333322   2   2333333


Q ss_pred             CCCCccEEEEccCC
Q 024295          153 HGMGVDYCFECTGV  166 (269)
Q Consensus       153 ~~~~~d~v~d~~g~  166 (269)
                      +  ++|++++++|.
T Consensus        91 ~--~iDilin~Ag~  102 (191)
T d1luaa1          91 K--GAHFVFTAGAI  102 (191)
T ss_dssp             T--TCSEEEECCCT
T ss_pred             c--CcCeeeecCcc
Confidence            3  78999999874

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.63  E-value=1.5e-05  Score=60.75  Aligned_cols=111  Identities=19%  Similarity=0.233  Sum_probs=68.7

Q ss_pred             ccccchhhhHHHHHHh--cCCCCCCeEEEEcCChhHHHHHHHHHHcC---C---CeEEEEcCCcchHHHHHhC-------
Q 024295           64 FLSCGFTTGYGAAWKE--AKVEKGSSVAVLGLGTVGLGAVDGARMHG---A---AKIIGIDKNPWKKEKGKAF-------  128 (269)
Q Consensus        64 ~~~~~~~~a~~~l~~~--~~~~~~~~vlI~G~g~~G~~a~~la~~~g---~---~~v~~~~~~~~~~~~~~~~-------  128 (269)
                      .+..+...|.  +.+.  ..++++++||.+|+|+ |+.++.+++..|   .   .+|++++.+++-.+.+++.       
T Consensus        60 ~is~P~~~a~--~l~~L~~~l~~g~~VLeIGtGs-GY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~  136 (223)
T d1r18a_          60 TISAPHMHAF--ALEYLRDHLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS  136 (223)
T ss_dssp             EECCHHHHHH--HHHHTTTTCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             eeehhhhHHH--HHHHHhhccCCCCeEEEecCCC-CHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchh
Confidence            3444444443  2333  3789999999999876 777777777653   2   2799999888766655431       


Q ss_pred             --CCc--eeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEE
Q 024295          129 --GMT--DFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       129 --g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                        +..  .++..+      ..   ..+.+...||.|+-+.+.+..-+..++.|++| |++|..
T Consensus       137 ~~~~~nv~~~~~d------~~---~~~~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~g-G~lV~p  189 (223)
T d1r18a_         137 MLDSGQLLIVEGD------GR---KGYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVP  189 (223)
T ss_dssp             HHHHTSEEEEESC------GG---GCCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             hcCccEEEEEecc------cc---cccccccceeeEEEEeechhchHHHHHhcCCC-cEEEEE
Confidence              111  122111      11   11122338998887665544457788999996 999773

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.62  E-value=3.8e-05  Score=59.11  Aligned_cols=102  Identities=19%  Similarity=0.177  Sum_probs=64.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCC---CCccHHHHHHhhhCCCCccE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDE---PNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~---~~~~~~~~i~~~~~~~~~d~  159 (269)
                      ++++|||+|+ +++|.+.++.+...|+ +|+.+++++.+....     ...+.....   ..+.....+.+..+..++|+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~   74 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEASA-----SVIVKMTDSFTEQADQVTAEVGKLLGDQKVDA   74 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTSSE-----EEECCCCSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccccccc-----cceeecccCcHHHHHHHHHHHHHHhCCCCceE
Confidence            4789999986 8999999999999999 999998765432211     111111110   00122333333344447999


Q ss_pred             EEEccCCh----h----------------------HHHHHHHHcccCCcEEEEEccCCC
Q 024295          160 CFECTGVP----S----------------------LLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       160 v~d~~g~~----~----------------------~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                      +++++|.-    .                      ..+.++..++++ |+++.++....
T Consensus        75 lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-G~Iv~isS~~~  132 (236)
T d1dhra_          75 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG-GLLTLAGAKAA  132 (236)
T ss_dssp             EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGGG
T ss_pred             EEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccc-cceeEEccHHH
Confidence            99998740    0                      234455677885 99999986543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00023  Score=54.86  Aligned_cols=77  Identities=21%  Similarity=0.271  Sum_probs=56.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCc--eeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMT--DFINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +++..  ...|-.+   .+-.+.+.+.. + ++|+
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~-g-~iDi   79 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGD---WEATERALGSV-G-PVDL   79 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HHHHHHHHTTC-C-CCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC---HHHHHHHHHHh-C-CceE
Confidence            6899999986 8999999999999999 9999999998877654 45432  2334433   44444444333 2 7999


Q ss_pred             EEEccCC
Q 024295          160 CFECTGV  166 (269)
Q Consensus       160 v~d~~g~  166 (269)
                      +++++|.
T Consensus        80 lVnnAg~   86 (244)
T d1pr9a_          80 LVNNAAV   86 (244)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            9998865

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.55  E-value=0.00018  Score=55.65  Aligned_cols=107  Identities=21%  Similarity=0.231  Sum_probs=71.8

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCcee-eCCCCCCCccHHHHHHhhhCC-CCccE
Q 024295           83 EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDF-INPDDEPNKSISELVKGITHG-MGVDY  159 (269)
Q Consensus        83 ~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~-~~~d~  159 (269)
                      -+|+++||+|+ +++|.+.++.+...|+ +|+..++++++.+.+++.+...+ .|-.+  .++..+.+.+.... .++|+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~G~iDi   79 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGGAFFQVDLED--ERERVRFVEEAAYALGRVDV   79 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTCEEEECCTTC--HHHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeEEEEeCCC--HHHHHHHHHHHHHhcCCCCe
Confidence            37899999986 8999999999999999 99999999988888887775432 23322  12222223222111 27999


Q ss_pred             EEEccCChh-------------------------HHHHHHHHccc-CCcEEEEEccCCC
Q 024295          160 CFECTGVPS-------------------------LLSEALETTKV-GKGKVIVIGVGVD  192 (269)
Q Consensus       160 v~d~~g~~~-------------------------~~~~~~~~l~~-~~G~~v~~g~~~~  192 (269)
                      +++++|...                         ..+.++..+++ +.|+++.++....
T Consensus        80 LVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~  138 (248)
T d2d1ya1          80 LVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQG  138 (248)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGG
T ss_pred             EEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccc
Confidence            999887410                         23445555543 2389999875543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=97.55  E-value=0.00011  Score=56.43  Aligned_cols=94  Identities=15%  Similarity=0.148  Sum_probs=67.3

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      .+.++.+||-+|+|+ |..+..+++ .|+ +|+++|.+++..+.+++.+....+..+.   .++     .. +...||+|
T Consensus        39 ~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~~---~~l-----~~-~~~~fD~i  106 (246)
T d2avna1          39 YLKNPCRVLDLGGGT-GKWSLFLQE-RGF-EVVLVDPSKEMLEVAREKGVKNVVEAKA---EDL-----PF-PSGAFEAV  106 (246)
T ss_dssp             HCCSCCEEEEETCTT-CHHHHHHHT-TTC-EEEEEESCHHHHHHHHHHTCSCEEECCT---TSC-----CS-CTTCEEEE
T ss_pred             hcCCCCEEEEECCCC-chhcccccc-cce-EEEEeecccccccccccccccccccccc---ccc-----cc-ccccccce
Confidence            345778999999985 999988876 488 9999999999999999877655544332   221     11 22389988


Q ss_pred             EEcc-------CChhHHHHHHHHcccCCcEEEEE
Q 024295          161 FECT-------GVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       161 ~d~~-------g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      +-..       .....+..+.+.|++| |.++..
T Consensus       107 i~~~~~~~~~~d~~~~l~~i~r~Lk~g-G~~ii~  139 (246)
T d2avna1         107 LALGDVLSYVENKDKAFSEIRRVLVPD-GLLIAT  139 (246)
T ss_dssp             EECSSHHHHCSCHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             eeecchhhhhhhHHHHHHHHHhhcCcC-cEEEEE
Confidence            7532       2233577888999996 988654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.55  E-value=0.00014  Score=53.54  Aligned_cols=101  Identities=20%  Similarity=0.211  Sum_probs=67.6

Q ss_pred             HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC-ceeeCCCCCCCccHHHHHHhh
Q 024295           77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM-TDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      ....+++++++||-+|+|. |..++.+++. +. +|++++.+++..+.+++    .|. +.+ ....   .+..+..   
T Consensus        26 l~~l~~~~g~~VLDiGcGs-G~~s~~lA~~-~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v-~~~~---gda~~~~---   95 (186)
T d1l3ia_          26 MCLAEPGKNDVAVDVGCGT-GGVTLELAGR-VR-RVYAIDRNPEAISTTEMNLQRHGLGDNV-TLME---GDAPEAL---   95 (186)
T ss_dssp             HHHHCCCTTCEEEEESCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHTTCCTTE-EEEE---SCHHHHH---
T ss_pred             HHhcCCCCCCEEEEEECCe-Eccccccccc-ce-EEEEecCCHHHHHHHHHHHHHcCCCcce-EEEE---Cchhhcc---
Confidence            3457889999999999875 6667777764 44 99999999988887754    453 222 1111   3333332   


Q ss_pred             hCCCCccEEEEccCC---hhHHHHHHHHcccCCcEEEEEc
Q 024295          152 THGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .+...+|.|+-..+.   ...++.+.+.++++ |+++...
T Consensus        96 ~~~~~~D~v~~~~~~~~~~~~~~~~~~~Lkpg-G~lvi~~  134 (186)
T d1l3ia_          96 CKIPDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTA  134 (186)
T ss_dssp             TTSCCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             cccCCcCEEEEeCccccchHHHHHHHHHhCcC-CEEEEEe
Confidence            233489988754432   33577888899996 9987764

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.53  E-value=0.00041  Score=50.27  Aligned_cols=96  Identities=16%  Similarity=0.045  Sum_probs=62.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      +++|||+|+|-+|..+++.+...|. +|++++++.++.+.+.+ ++...+..... ......+..   ..  ..|.++.+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l~~~~~~~~~~~~~~-~~~~~~~~~---i~--~~~~~i~~   74 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDV-NDDAALDAE---VA--KHDLVISL   74 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCT-TCHHHHHHH---HT--TSSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHHHhcccccccccccc-cchhhhHhh---hh--ccceeEee
Confidence            6899999999999999998888899 99999999998888765 44322221111 011221221   11  56788887


Q ss_pred             cCChhHHHHHHHHcccCCcEEEEEc
Q 024295          164 TGVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       164 ~g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +...........+.+.+ -.++...
T Consensus        75 ~~~~~~~~~~~~~~~~~-~~~~~~~   98 (182)
T d1e5qa1          75 IPYTFHATVIKSAIRQK-KHVVTTS   98 (182)
T ss_dssp             SCGGGHHHHHHHHHHHT-CEEECSS
T ss_pred             ccchhhhHHHHHHHhhc-cceeecc
Confidence            76654545555555553 5665554

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=97.51  E-value=2.6e-05  Score=59.91  Aligned_cols=100  Identities=19%  Similarity=0.198  Sum_probs=68.5

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVK  149 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~  149 (269)
                      +...++++++++||-+|+|+ |..+..+++. +. +|+++|.+++..+.+++    .+.+  .++..+.   .++     
T Consensus         8 l~~~~~~~~~~rILDiGcGt-G~~~~~la~~-~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~---~~~-----   76 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIGAGA-GHTALAFSPY-VQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA---ESL-----   76 (234)
T ss_dssp             HHHHHTCCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT---TBC-----
T ss_pred             HHHHhCCCCCCEEEEeCCcC-cHHHHHHHHh-CC-eEEEEeCChhhhhhhhhhhccccccccccccccc---ccc-----
Confidence            56789999999999999987 8888888875 56 99999999887777654    2322  1221111   111     


Q ss_pred             hhhCCCCccEEEEccC------ChhHHHHHHHHcccCCcEEEEEc
Q 024295          150 GITHGMGVDYCFECTG------VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       150 ~~~~~~~~d~v~d~~g------~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .. ++..||+|+-.-.      -...+.++.+.|+|| |+++...
T Consensus        77 ~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~~~~~~  119 (234)
T d1xxla_          77 PF-PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQD-GRFLLVD  119 (234)
T ss_dssp             CS-CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cc-cccccceeeeeceeecccCHHHHHHHHHHeeCCC-cEEEEEE
Confidence            11 2237998875322      133588999999996 9987754

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=0.00023  Score=54.73  Aligned_cols=77  Identities=18%  Similarity=0.198  Sum_probs=55.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCC-ce-eeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGM-TD-FINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~-~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +++. .. ..|-.+   .+..+.+.+.. + ++|+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~-g-~iDi   77 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGD---WDATEKALGGI-G-PVDL   77 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HHHHHHHHTTC-C-CCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC---HHHHHHHHHHc-C-CCeE
Confidence            5899999986 8999999999999999 9999999988776654 4442 22 233333   44333333322 3 7999


Q ss_pred             EEEccCC
Q 024295          160 CFECTGV  166 (269)
Q Consensus       160 v~d~~g~  166 (269)
                      +++++|.
T Consensus        78 lVnnAg~   84 (242)
T d1cyda_          78 LVNNAAL   84 (242)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999874

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.0005  Score=50.32  Aligned_cols=42  Identities=19%  Similarity=0.253  Sum_probs=36.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG  125 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~  125 (269)
                      ++++|||+|+|+.+.+++..+...|+++++.+.|++++.+.+
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~   58 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKA   58 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHH
Confidence            678999999999999999888889998999999988766644

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.0003  Score=54.11  Aligned_cols=168  Identities=20%  Similarity=0.187  Sum_probs=95.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCc---eeeCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMT---DFINPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~---~v~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +++..   ...|-.+  +++..+.+.+... -.++
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   79 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGANGKGLMLNVTD--PASIESVLEKIRAEFGEV   79 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHTCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCCCCcEEEEEecC--HHHhhhhhhhhhcccCCc
Confidence            5889999986 8999999999999999 9999999988877654 35432   2233332  1223333333221 1279


Q ss_pred             cEEEEccCChh-------------------------HHHHHHHHccc-CCcEEEEEccCCC-c-cccchh----------
Q 024295          158 DYCFECTGVPS-------------------------LLSEALETTKV-GKGKVIVIGVGVD-A-MVPLNV----------  199 (269)
Q Consensus       158 d~v~d~~g~~~-------------------------~~~~~~~~l~~-~~G~~v~~g~~~~-~-~~~~~~----------  199 (269)
                      |++++++|...                         ..+.++..+.. +.|+++.++.... . ......          
T Consensus        80 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKaal~~  159 (243)
T d1q7ba_          80 DILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIG  159 (243)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHH
T ss_pred             ceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCCCCCHHHHHHHHHHHH
Confidence            99999886511                         23445555532 2399999985433 1 111111          


Q ss_pred             ------HhhhhCCceEEeeeccCCCCC---CcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcC
Q 024295          200 ------IALACGGRTLKGTTFGGIKTK---SDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ  259 (269)
Q Consensus       200 ------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~  259 (269)
                            ..+-.+++++.....+...+.   ...++..+.+.+. +..    .+...-+++-++..+|-+
T Consensus       160 lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~-~pl----~R~~~pedvA~~v~fL~S  223 (243)
T d1q7ba_         160 FSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQ-VPA----GRLGGAQEIANAVAFLAS  223 (243)
T ss_dssp             HHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTT-CTT----SSCBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCccCeEEEEEecceEechhhhhhhhhHHHHHHhc-CCC----CCCCCHHHHHHHHHHHhC
Confidence                  112246777777666654321   1122223333322 111    222346788888877654

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.00023  Score=57.05  Aligned_cols=104  Identities=19%  Similarity=0.184  Sum_probs=69.0

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHh----CC-----------Cce--eeCCC
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAA-KIIGIDKNPWKKEKGKA----FG-----------MTD--FINPD  137 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~-~v~~~~~~~~~~~~~~~----~g-----------~~~--v~~~~  137 (269)
                      +....+++||++||-.|+|+ |.++..+|+..|.+ +|++++.+++..+.+++    ++           .+.  +.+.+
T Consensus        90 Il~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~d  168 (324)
T d2b25a1          90 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD  168 (324)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred             HHHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecc
Confidence            45678999999999999987 99999999998754 89999999988887754    11           111  11111


Q ss_pred             CCCCccHHHHHHhhhCCCCccEEEEccCCh-hHHHHHHHHcccCCcEEEEEc
Q 024295          138 DEPNKSISELVKGITHGMGVDYCFECTGVP-SLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       138 ~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~-~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      -   .++...   .. ...||.||=-+..| ..+.++.+.|++| |+++.+-
T Consensus       169 i---~~~~~~---~~-~~~fD~V~LD~p~P~~~l~~~~~~LKpG-G~lv~~~  212 (324)
T d2b25a1         169 I---SGATED---IK-SLTFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYV  212 (324)
T ss_dssp             T---TCCC-----------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEE
T ss_pred             h---hhcccc---cC-CCCcceEeecCcCHHHHHHHHHHhccCC-CEEEEEe
Confidence            0   111111   11 22688776333332 3678999999997 9998874

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.46  E-value=0.00026  Score=54.49  Aligned_cols=79  Identities=16%  Similarity=0.247  Sum_probs=55.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCcee-eCCCCCCCccHHHHHHhhhC--CCCcc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDF-INPDDEPNKSISELVKGITH--GMGVD  158 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v-~~~~~~~~~~~~~~i~~~~~--~~~~d  158 (269)
                      +++++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+ +++..+ .|-.+  +++..+.+.+...  + ++|
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g-~iD   79 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD--PASVERGFAEALAHLG-RLD   79 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC--HHHHHHHHHHHHHHHS-SCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCeEEEEecCC--HHHHHHHHHHHHHhcC-Cce
Confidence            5789999986 8999999999999999 99999999988877654 555432 23332  1233333322211  3 799


Q ss_pred             EEEEccCC
Q 024295          159 YCFECTGV  166 (269)
Q Consensus       159 ~v~d~~g~  166 (269)
                      ++++++|.
T Consensus        80 ilVnnAG~   87 (242)
T d1ulsa_          80 GVVHYAGI   87 (242)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999875

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.44  E-value=5.8e-05  Score=55.42  Aligned_cols=66  Identities=12%  Similarity=0.107  Sum_probs=45.1

Q ss_pred             cccccCCceeeeecCeEEeee------------------------------------eccCcccceEeeccCceEEcCCC
Q 024295           13 NGLMLDSTSRMSVRGQKLYHI------------------------------------FSCSTWSEYMVIDANYVVKVDPS   56 (269)
Q Consensus        13 ~~~vg~~~~~~~~~Gd~v~~~------------------------------------~~~g~~a~~~~v~~~~~~~vp~~   56 (269)
                      +-.+|+++..+++ ||+|...                                    ..+|+|+||+++++++++++|+.
T Consensus        66 V~~vG~~V~~~~v-GdrV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~GgfaEy~~v~~~~~~~ip~~  144 (179)
T d1uufa1          66 VVAVGDQVEKYAP-GDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRVA  144 (179)
T ss_dssp             EEEECTTCCSCCT-TCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCCC
T ss_pred             chhhccccccCCC-CCEEEEcccccccCccccccCcccccCCCccccccccCCCCCcccccccceEEEechHHEEECCCC
Confidence            3446888888998 9998411                                    01378999999999999999965


Q ss_pred             CCcccccccccchhhhHHHHHHhcCCC
Q 024295           57 IDPSDASFLSCGFTTGYGAAWKEAKVE   83 (269)
Q Consensus        57 ~~~~~aa~~~~~~~~a~~~l~~~~~~~   83 (269)
                      ...  ++.. .++.++++++. ++.++
T Consensus       145 ~~~--~~~a-~~l~~a~~a~~-~a~v~  167 (179)
T d1uufa1         145 DIE--MIRA-DQINEAYERML-RGDVK  167 (179)
T ss_dssp             CEE--EECG-GGHHHHHHHHH-TTCSS
T ss_pred             CcC--hhHh-chhHHHHHHHH-HhCcc
Confidence            432  2222 36678888763 45543

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00024  Score=54.72  Aligned_cols=77  Identities=19%  Similarity=0.288  Sum_probs=57.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CCc-eeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GMT-DFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+. +.. .+.|...   .+..+...+..+  ++|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~--~id~l   78 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTK---KKQIDQFANEVE--RLDVL   78 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTC---HHHHHHHHHHCS--CCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhccCCceeeeeccc---cccccccccccc--cceeE
Confidence            6889999986 8999999999999999 999999999888777664 332 2333333   555555555443  79999


Q ss_pred             EEccCC
Q 024295          161 FECTGV  166 (269)
Q Consensus       161 ~d~~g~  166 (269)
                      +++.|.
T Consensus        79 Vn~ag~   84 (245)
T d2ag5a1          79 FNVAGF   84 (245)
T ss_dssp             EECCCC
T ss_pred             Eecccc
Confidence            998875

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.39  E-value=0.0006  Score=52.87  Aligned_cols=79  Identities=18%  Similarity=0.247  Sum_probs=54.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce---eeCCCCCCCccHH---HHHHhhh
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD---FINPDDEPNKSIS---ELVKGIT  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~---~~i~~~~  152 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.+...   ..|-.+  .++..   +.+.+..
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~--~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS--RTERDKLMQTVAHVF   81 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCC--HHHHHHHHHHHHHHh
Confidence            6899999986 8999999999999999 999999998776654    3345332   233333  12222   2233333


Q ss_pred             CCCCccEEEEccCC
Q 024295          153 HGMGVDYCFECTGV  166 (269)
Q Consensus       153 ~~~~~d~v~d~~g~  166 (269)
                      ++ .+|++++++|.
T Consensus        82 ~g-~idilinnag~   94 (258)
T d1ae1a_          82 DG-KLNILVNNAGV   94 (258)
T ss_dssp             TS-CCCEEEECCCC
T ss_pred             CC-CcEEEeccccc
Confidence            34 69999998875

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.38  E-value=0.00028  Score=53.62  Aligned_cols=102  Identities=26%  Similarity=0.249  Sum_probs=68.4

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHhhh
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAA-KIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~-~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      ....++||++||-+|+|+ |..+..+++..|.+ +|++++.+++..+.+++.    +....+..+.   ... +.... .
T Consensus        67 ~~l~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~---~~~-~~~~~-~  140 (227)
T d1g8aa_          67 KNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDA---TKP-EEYRA-L  140 (227)
T ss_dssp             CCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCT---TCG-GGGTT-T
T ss_pred             cccccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEEC---CCc-ccccc-c
Confidence            456789999999999987 99999999998753 899999999888877552    3222222221   111 11111 1


Q ss_pred             CCCCccEEEEccCCh----hHHHHHHHHcccCCcEEEEE
Q 024295          153 HGMGVDYCFECTGVP----SLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       153 ~~~~~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~  187 (269)
                       ...+|+++..+..+    ..+..+.+.|++| |+++.+
T Consensus       141 -~~~vD~i~~d~~~~~~~~~~l~~~~~~Lkpg-G~lvi~  177 (227)
T d1g8aa_         141 -VPKVDVIFEDVAQPTQAKILIDNAEVYLKRG-GYGMIA  177 (227)
T ss_dssp             -CCCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             -ccceEEEEEEccccchHHHHHHHHHHhcccC-CeEEEE
Confidence             13788887655332    1477888899996 988765

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.37  E-value=0.0013  Score=44.04  Aligned_cols=94  Identities=10%  Similarity=-0.065  Sum_probs=63.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc--chHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP--WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~--~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      .+++|||+|+|.+|..-++.+...|+ +|++++...  +....+++-+....-..-+  +.++          .++++|+
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~--~~dl----------~~~~lv~   77 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIPQFTVWANEGMLTLVEGPFD--ETLL----------DSCWLAI   77 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCHHHHHHHTTTSCEEEESSCC--GGGG----------TTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCChHHHHHHhcCCceeeccCCC--HHHh----------CCCcEEe
Confidence            57899999999999999999999999 888876543  2222333322333221111  1222          2789999


Q ss_pred             EccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          162 ECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      -+++.+..-....+..++. |..|.+.+.+
T Consensus        78 ~at~d~~~n~~i~~~a~~~-~ilVNv~D~p  106 (113)
T d1pjqa1          78 AATDDDTVNQRVSDAAESR-RIFCNVVDAP  106 (113)
T ss_dssp             ECCSCHHHHHHHHHHHHHT-TCEEEETTCT
T ss_pred             ecCCCHHHHHHHHHHHHHc-CCEEEeCCCh
Confidence            9998875656777888884 8888875443

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.00035  Score=53.94  Aligned_cols=105  Identities=23%  Similarity=0.233  Sum_probs=68.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCcee--eCCCCCCCccHHHHHHhhhCC-CCcc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDF--INPDDEPNKSISELVKGITHG-MGVD  158 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v--~~~~~~~~~~~~~~i~~~~~~-~~~d  158 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+ ++....  .|-.+  .++..+.+.+.... .++|
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~~~~~~g~iD   81 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ--EDDVKTLVSETIRRFGRLD   81 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS--HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEccCCC--HHHHHHHHHHHHHhcCCCC
Confidence            6899999986 8999999999999999 99999999988887655 443222  23322  12233223222211 2799


Q ss_pred             EEEEccCChh--------------------------HHHHHHHHcccCCcEEEEEccCC
Q 024295          159 YCFECTGVPS--------------------------LLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       159 ~v~d~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      ++++++|...                          ..+.++..++.++|+++.++...
T Consensus        82 ilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~  140 (250)
T d1ydea1          82 CVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLV  140 (250)
T ss_dssp             EEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHH
T ss_pred             EEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCccccccc
Confidence            9999887310                          23445555554348999987544

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=8.3e-05  Score=56.84  Aligned_cols=99  Identities=15%  Similarity=0.145  Sum_probs=65.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc--eeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT--DFINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      ..+|.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++....  ..+....   .+.......+.++ .||.
T Consensus        51 ~~~g~~VLdIGcG~-G~~a~~~a~~~~~-~v~~id~s~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~fD~  124 (229)
T d1zx0a1          51 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLK---GLWEDVAPTLPDG-HFDG  124 (229)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEE---SCHHHHGGGSCTT-CEEE
T ss_pred             ccCCCeEEEeeccc-hHHHHHHHHcCCC-eEEEeCCCHHHHHHHHHHhhhccccccccc---ccccccccccccc-cccc
Confidence            35788999999986 8888888887655 899999999988888764311  1111111   2233333333333 8998


Q ss_pred             E-EEccCC----------hhHHHHHHHHcccCCcEEEEE
Q 024295          160 C-FECTGV----------PSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       160 v-~d~~g~----------~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      + ||++..          +..+..+.+.|+|| |+++.+
T Consensus       125 i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpG-G~~~~~  162 (229)
T d1zx0a1         125 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYC  162 (229)
T ss_dssp             EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEEC
T ss_pred             eeecccccccccccccCHHHHHHHHHHHcCCC-cEEEEE
Confidence            7 465532          12456788899997 998764

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.36  E-value=0.00067  Score=49.41  Aligned_cols=94  Identities=18%  Similarity=0.148  Sum_probs=60.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeC-------CCCCCCccHHHHHHhhhCCCCc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFIN-------PDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~-------~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      .+++.|+|+|.+|++.+..+...|. .|+.+++++++.+.+++.+......       .......+..+.+.      ..
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~------~a   73 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK------DA   73 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT------TC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc------CC
Confidence            3689999999999999999999999 9999999999988887654211110       00000022333231      68


Q ss_pred             cEEEEccCChhH---HHHHHHHcccCCcEEEE
Q 024295          158 DYCFECTGVPSL---LSEALETTKVGKGKVIV  186 (269)
Q Consensus       158 d~v~d~~g~~~~---~~~~~~~l~~~~G~~v~  186 (269)
                      |++|-++.....   +.++...+.++ -.++.
T Consensus        74 D~iii~v~~~~~~~~~~~i~~~l~~~-~~iv~  104 (184)
T d1bg6a2          74 DVILIVVPAIHHASIAANIASYISEG-QLIIL  104 (184)
T ss_dssp             SEEEECSCGGGHHHHHHHHGGGCCTT-CEEEE
T ss_pred             CEEEEEEchhHHHHHHHHhhhccCCC-CEEEE
Confidence            999999976532   33334455553 44443

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=97.35  E-value=7e-05  Score=59.13  Aligned_cols=102  Identities=15%  Similarity=0.124  Sum_probs=69.6

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSISELV  148 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i  148 (269)
                      |.....+.++.+||-+|+|. |..+..+++..|+ +|++++.++...+.+++    .|..   .++..+-   .++    
T Consensus        59 l~~~~~l~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~---~~l----  129 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF---LEI----  129 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT---TSC----
T ss_pred             HHHhcCCCCCCEEEEeCCCC-cHHHhhhhccCCc-EEEEEeccchhhhhhhccccccccccccccccccc---ccc----
Confidence            34567889999999999986 8888889988898 99999999887777654    2321   2222111   111    


Q ss_pred             HhhhCCCCccEEEEcc-----C-ChhHHHHHHHHcccCCcEEEEEcc
Q 024295          149 KGITHGMGVDYCFECT-----G-VPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~-----g-~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                       . .+...||+|+-.-     . -...+..+.+.|+|| |+++....
T Consensus       130 -~-~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lkpg-G~l~~~~~  173 (282)
T d2o57a1         130 -P-CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITDP  173 (282)
T ss_dssp             -S-SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             -c-ccccccchhhccchhhhccCHHHHHHHHHHhcCCC-cEEEEEEe
Confidence             0 1223799986422     1 133578999999996 99887653

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.33  E-value=0.00054  Score=49.23  Aligned_cols=85  Identities=22%  Similarity=0.321  Sum_probs=59.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC-ceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM-TDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      +|.|+|+|.+|...+..++..|. +|++.++++++.+.+++.+. +...+..+        .+      ...|+||-++.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~~~~~~~~~~--------~~------~~~DiIilavp   66 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQDLS--------LL------QTAKIIFLCTP   66 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESCGG--------GG------TTCSEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhccceeeeecc--------cc------cccccccccCc
Confidence            58899999999988888888899 99999999999999998874 44332211        11      26899999886


Q ss_pred             ChhHHHHHHH----HcccCCcEEEEEc
Q 024295          166 VPSLLSEALE----TTKVGKGKVIVIG  188 (269)
Q Consensus       166 ~~~~~~~~~~----~l~~~~G~~v~~g  188 (269)
                      .. .....++    .++++ -.++.++
T Consensus        67 ~~-~~~~vl~~l~~~l~~~-~iv~~~~   91 (165)
T d2f1ka2          67 IQ-LILPTLEKLIPHLSPT-AIVTDVA   91 (165)
T ss_dssp             HH-HHHHHHHHHGGGSCTT-CEEEECC
T ss_pred             Hh-hhhhhhhhhhhhcccc-cceeecc
Confidence            43 3344444    44553 4454454

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.0014  Score=50.59  Aligned_cols=78  Identities=22%  Similarity=0.356  Sum_probs=53.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCC--ce---eeCCCCCCCccHHH---HHHh
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGM--TD---FINPDDEPNKSISE---LVKG  150 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~--~~---v~~~~~~~~~~~~~---~i~~  150 (269)
                      +++++||+|+ +++|.+.+..+...|+ +|+.+++++++.+.+    +..+.  ..   ..|-.+  +++..+   .+.+
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~--~~~v~~~v~~~~~   85 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN--EEDILSMFSAIRS   85 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCC--HHHHHHHHHHHHH
Confidence            6889999986 8999999999989999 999999998877664    22331  21   223332  132322   3333


Q ss_pred             hhCCCCccEEEEccCC
Q 024295          151 ITHGMGVDYCFECTGV  166 (269)
Q Consensus       151 ~~~~~~~d~v~d~~g~  166 (269)
                      .. + ++|++++++|.
T Consensus        86 ~~-g-~iD~lVnnAg~   99 (257)
T d1xg5a_          86 QH-S-GVDICINNAGL   99 (257)
T ss_dssp             HH-C-CCSEEEECCCC
T ss_pred             hc-C-CCCEEEecccc
Confidence            23 3 79999999875

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.31  E-value=0.0018  Score=46.51  Aligned_cols=93  Identities=19%  Similarity=0.233  Sum_probs=65.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhCCC-ceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKAFGM-TDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      ++|+|+|+|.+|...+..++..|. .+|++++++++..+.+++.+. +......+           ... ....|+++-|
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~-----------~~~-~~~~dlIila   69 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIA-----------KVE-DFSPDFVMLS   69 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGG-----------GGG-GTCCSEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhh-----------hhh-cccccccccc
Confidence            369999999999999988888885 389999999999999999884 44443321           111 1267999998


Q ss_pred             cCChh---HHHHHHHHcccCCcEEEEEccCC
Q 024295          164 TGVPS---LLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       164 ~g~~~---~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      +....   .+..+...++++ ..++.++...
T Consensus        70 ~p~~~~~~vl~~l~~~~~~~-~ii~d~~s~k   99 (171)
T d2g5ca2          70 SPVRTFREIAKKLSYILSED-ATVTDQGSVK   99 (171)
T ss_dssp             SCHHHHHHHHHHHHHHSCTT-CEEEECCSCC
T ss_pred             CCchhhhhhhhhhhcccccc-cccccccccc
Confidence            86432   244455566774 6666666543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.30  E-value=0.00044  Score=53.21  Aligned_cols=79  Identities=16%  Similarity=0.160  Sum_probs=54.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCce---eeCCCCCCCccHHHHHHhhhC--CCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMTD---FINPDDEPNKSISELVKGITH--GMG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~~---v~~~~~~~~~~~~~~i~~~~~--~~~  156 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +++...   ..|-.+  +++..+.+.+...  + +
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g-~   80 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ--PAQWKAAVDTAVTAFG-G   80 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC--HHHHHHHHHHHHHHHS-C
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhCcceEEEeecCC--HHHHHHHHHHHHHHhC-C
Confidence            6899999986 8999999999999999 9999999998877654 454321   123322  1223333333221  3 7


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|++++++|.
T Consensus        81 idilinnAG~   90 (244)
T d1nffa_          81 LHVLVNNAGI   90 (244)
T ss_dssp             CCEEEECCCC
T ss_pred             CeEEEECCcc
Confidence            9999999875

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.29  E-value=0.00088  Score=51.90  Aligned_cols=80  Identities=16%  Similarity=0.234  Sum_probs=54.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCce---eeCCCCCCCccHHHHHHhhhC--
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTD---FINPDDEPNKSISELVKGITH--  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~~--  153 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+..++++++.+.+.    +.|...   ..|-.+  +++..+.+.+...  
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS--RSERQELMNTVANHF   83 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCC--HHHHHHHHHHHHHHh
Confidence            6899999986 8999999999999999 9999999988776542    334322   223322  1223333333222  


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      +..+|++++++|.
T Consensus        84 ~~~idilvnnAG~   96 (259)
T d2ae2a_          84 HGKLNILVNNAGI   96 (259)
T ss_dssp             TTCCCEEEECCCC
T ss_pred             CCCceEEEECCce
Confidence            2269999999875

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=97.27  E-value=0.00057  Score=51.74  Aligned_cols=100  Identities=18%  Similarity=0.195  Sum_probs=67.7

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVK  149 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~  149 (269)
                      +.+.++++++++||-+|+|. |..+..+++. |. +|+++|.+++..+.+++    .+.+  .++..+.   .++     
T Consensus         7 ll~~~~l~~~~rVLDiGcG~-G~~~~~l~~~-~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~---~~l-----   75 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATGG-GHVANAFAPF-VK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA---EQM-----   75 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCTT-CHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC----CC-----
T ss_pred             HHHhcCCCCcCEEEEecccC-cHHHHHHHHh-CC-EEEEEECCHHHHhhhhhccccccccccccccccc---ccc-----
Confidence            45778999999999999984 8877777765 66 89999999887776644    3432  1222211   111     


Q ss_pred             hhhCCCCccEEEEccC-----C-hhHHHHHHHHcccCCcEEEEEc
Q 024295          150 GITHGMGVDYCFECTG-----V-PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       150 ~~~~~~~~d~v~d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .+ +...||+|+-.-.     . ...+.++.+.|+|| |+++...
T Consensus        76 ~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~i~~  118 (231)
T d1vl5a_          76 PF-TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVD  118 (231)
T ss_dssp             CS-CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cc-cccccccccccccccccCCHHHHHHHHHHhcCCC-cEEEEEe
Confidence            11 1237999974321     2 23588999999996 9988764

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=0.002  Score=52.95  Aligned_cols=105  Identities=20%  Similarity=0.210  Sum_probs=69.6

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-----------C----Ccee-eCCCCC
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-----------G----MTDF-INPDDE  139 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-----------g----~~~v-~~~~~~  139 (269)
                      +.+..++++++++|-+|+|. |..+.++|+..|+++|++++.++...+.+++.           |    .... +.... 
T Consensus       208 Il~~l~Lkpgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f-  285 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF-  285 (406)
T ss_dssp             HHHHTTCCTTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS-
T ss_pred             HHHHhCCCCCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeech-
Confidence            45788999999999999986 99999999999987999999998777766431           1    1111 11110 


Q ss_pred             CCccHHHHHHhhhCCCCccEEEEc-cC-C---hhHHHHHHHHcccCCcEEEEEc
Q 024295          140 PNKSISELVKGITHGMGVDYCFEC-TG-V---PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       140 ~~~~~~~~i~~~~~~~~~d~v~d~-~g-~---~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ...+..+..   .  ..+|+++-. .- .   ...+.++++.|++| |++|...
T Consensus       286 ~~~~~~d~~---~--~~adVV~inn~~f~~~l~~~L~ei~r~LKPG-GrIVs~~  333 (406)
T d1u2za_         286 VDNNRVAEL---I--PQCDVILVNNFLFDEDLNKKVEKILQTAKVG-CKIISLK  333 (406)
T ss_dssp             TTCHHHHHH---G--GGCSEEEECCTTCCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred             hhccccccc---c--ccceEEEEecccCchHHHHHHHHHHHhcCCC-cEEEEec
Confidence            001222221   1  157777732 21 1   22467888899997 9998864

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00038  Score=51.92  Aligned_cols=96  Identities=15%  Similarity=0.124  Sum_probs=61.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      .++|+|+|+ |.+|...+..+...|. +|.+++|++++.......+...+. |..     +. +.+.+...  +.|+||.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~~~~~~gD~~-----d~-~~l~~al~--~~d~vi~   73 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAHVVVGDVL-----QA-ADVDKTVA--GQDAVIV   73 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSEEEESCTT-----SH-HHHHHHHT--TCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhccccccccccccccccc-----ch-hhHHHHhc--CCCEEEE
Confidence            378999996 9999999988888899 999999998876554444544333 222     22 22333222  6899999


Q ss_pred             ccCChh----------HHHHHHHHcccC-CcEEEEEcc
Q 024295          163 CTGVPS----------LLSEALETTKVG-KGKVIVIGV  189 (269)
Q Consensus       163 ~~g~~~----------~~~~~~~~l~~~-~G~~v~~g~  189 (269)
                      ++|...          ....+++.++.. -.+++.++.
T Consensus        74 ~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss  111 (205)
T d1hdoa_          74 LLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTS  111 (205)
T ss_dssp             CCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             EeccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence            987521          123445555542 136777753

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.0011  Score=51.59  Aligned_cols=43  Identities=19%  Similarity=0.149  Sum_probs=37.7

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 024295           83 EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK  126 (269)
Q Consensus        83 ~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~  126 (269)
                      -+|+++||+|+ +++|.+.+..+...|+ +|+.++|++++.+.+.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~   55 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVV   55 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            36899999986 8999999998888999 9999999998877653

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.24  E-value=0.00085  Score=50.23  Aligned_cols=102  Identities=18%  Similarity=0.045  Sum_probs=67.3

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhhCC
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      ...++||++||-+|+|+ |..+..+++..+..+|++++.+++..+.+++    .+....+..+.   .+. .....  .-
T Consensus        51 ~l~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~---~~~-~~~~~--~~  123 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA---SKP-WKYSG--IV  123 (209)
T ss_dssp             CCCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT---TCG-GGTTT--TC
T ss_pred             cCCCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeec---cCc-ccccc--cc
Confidence            46789999999999987 8888888988875599999999987776644    34332332221   111 00011  11


Q ss_pred             CCccEEEEccCCh----hHHHHHHHHcccCCcEEEEEc
Q 024295          155 MGVDYCFECTGVP----SLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       155 ~~~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ..+|+++..+..+    ..+..+.+.+++| |+++..-
T Consensus       124 ~~vd~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~  160 (209)
T d1nt2a_         124 EKVDLIYQDIAQKNQIEILKANAEFFLKEK-GEVVIMV  160 (209)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             ceEEEEEecccChhhHHHHHHHHHHHhccC-CeEEEEE
Confidence            2677777654322    2467788899996 9987764

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.23  E-value=0.0014  Score=49.92  Aligned_cols=73  Identities=21%  Similarity=0.129  Sum_probs=51.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      +++++||+|+ +++|.+.++.+...|+ +|+.+++++++.   ++.+...+...-.   .. .+.+.+.. + .+|++++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l---~~~~~~~~~~Dv~---~~-~~~~~~~~-g-~iD~lVn   72 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELL---KRSGHRYVVCDLR---KD-LDLLFEKV-K-EVDILVL   72 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH---HHTCSEEEECCTT---TC-HHHHHHHS-C-CCSEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHH---HhcCCcEEEcchH---HH-HHHHHHHh-C-CCcEEEe
Confidence            5789999986 8999999999999999 999999886554   4555443332221   22 33344433 3 7999999


Q ss_pred             ccCC
Q 024295          163 CTGV  166 (269)
Q Consensus       163 ~~g~  166 (269)
                      ++|.
T Consensus        73 nAG~   76 (234)
T d1o5ia_          73 NAGG   76 (234)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            8875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.23  E-value=0.0011  Score=45.66  Aligned_cols=75  Identities=19%  Similarity=0.244  Sum_probs=55.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      ++++|.|.|.+|..+++.+...|. .|++++.++++.+.+++.+...++-...  +.+..+..    +=...|.++-+++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~~~~~~gd~~--~~~~l~~a----~i~~a~~vi~~~~   73 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVIANAT--EENELLSL----GIRNFEYVIVAIG   73 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTCSEEEECCTT--CTTHHHHH----TGGGCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhCCcceeeecc--cchhhhcc----CCccccEEEEEcC
Confidence            357888999999999999999999 9999999999999998888654443221  23333322    1126788888876


Q ss_pred             Ch
Q 024295          166 VP  167 (269)
Q Consensus       166 ~~  167 (269)
                      ..
T Consensus        74 ~~   75 (134)
T d2hmva1          74 AN   75 (134)
T ss_dssp             SC
T ss_pred             ch
Confidence            54

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.22  E-value=0.00017  Score=55.22  Aligned_cols=101  Identities=21%  Similarity=0.265  Sum_probs=61.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCC---CccHHHHHHhhhCCCCccEE
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEP---NKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~i~~~~~~~~~d~v  160 (269)
                      +.+|||+|+ +++|.+.++.+...|+ +|+.+++++++....     ...+......   .....+.+.......++|++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~l   75 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQADS-----NILVDGNKNWTEQEQSILEQTASSLQGSQVDGV   75 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTSSE-----EEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCchhcccc-----cceeccccCchhHHHHHHHHHHHHhcCCCeeEE
Confidence            357899986 8999999999999999 999999876543211     1111111100   01111222222233379999


Q ss_pred             EEccCC----hh----------------------HHHHHHHHcccCCcEEEEEccCCC
Q 024295          161 FECTGV----PS----------------------LLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       161 ~d~~g~----~~----------------------~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                      ++++|.    ..                      ..+..+..++++ |+++.++....
T Consensus        76 innAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~Iv~isS~~~  132 (235)
T d1ooea_          76 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG-GLLQLTGAAAA  132 (235)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCGGG
T ss_pred             EECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccc-eEEEEeccHHh
Confidence            998874    00                      234556677885 99999986543

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.22  E-value=0.0032  Score=44.79  Aligned_cols=88  Identities=19%  Similarity=0.200  Sum_probs=62.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGV  166 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~  166 (269)
                      +|-|+|.|.+|...+.-+...|+ +|++.++++++.+.+++.++.. .       .+..+.++      ..|++|-|+..
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~-~-------~~~~e~~~------~~d~ii~~v~~   66 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAET-A-------STAKAIAE------QCDVIITMLPN   66 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE-C-------SSHHHHHH------HCSEEEECCSS
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhhhhh-c-------ccHHHHHh------CCCeEEEEcCC
Confidence            47899999999998887778899 9999999999999998887643 2       22222232      56899999976


Q ss_pred             hhHHHHHH-------HHcccCCcEEEEEccC
Q 024295          167 PSLLSEAL-------ETTKVGKGKVIVIGVG  190 (269)
Q Consensus       167 ~~~~~~~~-------~~l~~~~G~~v~~g~~  190 (269)
                      +......+       ..++++ -.++.++..
T Consensus        67 ~~~v~~v~~~~~~~~~~~~~g-~iiid~sT~   96 (161)
T d1vpda2          67 SPHVKEVALGENGIIEGAKPG-TVLIDMSSI   96 (161)
T ss_dssp             HHHHHHHHHSTTCHHHHCCTT-CEEEECSCC
T ss_pred             HHHHHHHHhCCcchhhccCCC-CEEEECCCC
Confidence            65555443       344553 556665543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00037  Score=45.02  Aligned_cols=35  Identities=31%  Similarity=0.457  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      ++++|+|+|.|.+|+++++++...|+ +|++.|.+.
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~   38 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRM   38 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCc
Confidence            57899999999999999999999999 999998754

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.19  E-value=0.0007  Score=52.78  Aligned_cols=79  Identities=23%  Similarity=0.321  Sum_probs=53.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CC---Cceee--CCCCCCCccHHHHHHhhh--CC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FG---MTDFI--NPDDEPNKSISELVKGIT--HG  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g---~~~v~--~~~~~~~~~~~~~i~~~~--~~  154 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+ ++   ....+  |-.+  +++..+.+.+..  -+
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g   81 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK--DEDVRNLVDTTIAKHG   81 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCCceEEEEccCCC--HHHHHHHHHHHHHHcC
Confidence            6899999986 8999999999999999 99999999888776543 33   22222  3322  233333333221  13


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                       .+|++++++|.
T Consensus        82 -~iD~lVnnAG~   92 (268)
T d2bgka1          82 -KLDIMFGNVGV   92 (268)
T ss_dssp             -CCCEEEECCCC
T ss_pred             -Ccceecccccc
Confidence             79999998863

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.19  E-value=0.00047  Score=53.45  Aligned_cols=79  Identities=18%  Similarity=0.244  Sum_probs=55.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCce---eeCCCCCCCccHHHHHHhhhC--CCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTD---FINPDDEPNKSISELVKGITH--GMG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---v~~~~~~~~~~~~~~i~~~~~--~~~  156 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ +++|...   ..|-.+  +++..+.+.+...  + +
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~--~~~v~~~~~~~~~~~g-~   79 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIGPAACAIALDVTD--QASIDRCVAELLDRWG-S   79 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHHS-C
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEeeCCC--HHHHHHHHHHHHHHhC-C
Confidence            5789999986 8999999999999999 999999998877764 4566432   223332  2223333333221  3 8


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|++++++|.
T Consensus        80 iDilVnnAg~   89 (256)
T d1k2wa_          80 IDILVNNAAL   89 (256)
T ss_dssp             CCEEEECCCC
T ss_pred             ccEEEeeccc
Confidence            9999999874

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.19  E-value=0.00067  Score=52.47  Aligned_cols=79  Identities=19%  Similarity=0.231  Sum_probs=54.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCce---eeCCCCCCCccHHHHHHhhhC--CCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTD---FINPDDEPNKSISELVKGITH--GMG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~---v~~~~~~~~~~~~~~i~~~~~--~~~  156 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++...   ..|-.+  +++..+.+.+...  + +
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g-~   79 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI--EEDWQRVVAYAREEFG-S   79 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC--HHHHHHHHHHHHHHHS-C
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEcccCC--HHHHHHHHHHHHHHcC-C
Confidence            6899999986 8999999999888999 999999998877765 4465322   223222  1233333322211  3 7


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|++++++|.
T Consensus        80 iDilVnnAg~   89 (254)
T d1hdca_          80 VDGLVNNAGI   89 (254)
T ss_dssp             CCEEEECCCC
T ss_pred             ccEEEecCcc
Confidence            9999999875

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.18  E-value=0.00045  Score=54.15  Aligned_cols=79  Identities=19%  Similarity=0.146  Sum_probs=53.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hCCCce---eeCCCCCCCccHHHHHHhhhC-CCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AFGMTD---FINPDDEPNKSISELVKGITH-GMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~~  157 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +++...   ..|-.+  .++..+.+.+... -..+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~g~i   80 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHGDNVLGIVGDVRS--LEDQKQAASRCVARFGKI   80 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeeEEeccccc--HHHHHHHHHHHHHHhCCc
Confidence            5899999986 8999999999999999 9999999988876653 455322   223332  1222222222211 1279


Q ss_pred             cEEEEccC
Q 024295          158 DYCFECTG  165 (269)
Q Consensus       158 d~v~d~~g  165 (269)
                      |++++++|
T Consensus        81 dilvnnAG   88 (276)
T d1bdba_          81 DTLIPNAG   88 (276)
T ss_dssp             CEEECCCC
T ss_pred             cccccccc
Confidence            99999886

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.15  E-value=0.0017  Score=49.69  Aligned_cols=97  Identities=24%  Similarity=0.300  Sum_probs=65.3

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCc-eeeCCCCCCCccHHHHHHh
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMT-DFINPDDEPNKSISELVKG  150 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~-~v~~~~~~~~~~~~~~i~~  150 (269)
                      +.......+.++||-+|+|+ |..+..+++ .|+ +|++++.+++..+.+++.    +.. .++..+          +.+
T Consensus        33 ~~~~~~~~~~~~iLDiGcGt-G~~~~~l~~-~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d----------~~~   99 (251)
T d1wzna1          33 IFKEDAKREVRRVLDLACGT-GIPTLELAE-RGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGD----------VLE   99 (251)
T ss_dssp             HHHHTCSSCCCEEEEETCTT-CHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESC----------GGG
T ss_pred             HHHHhcCCCCCEEEEeCCCC-Cccchhhcc-cce-EEEEEeeccccccccccccccccccchheehh----------hhh
Confidence            34455667788999999987 888888877 578 999999999888877653    321 222211          122


Q ss_pred             hhCCCCccEEEEccCC---------hhHHHHHHHHcccCCcEEEE
Q 024295          151 ITHGMGVDYCFECTGV---------PSLLSEALETTKVGKGKVIV  186 (269)
Q Consensus       151 ~~~~~~~d~v~d~~g~---------~~~~~~~~~~l~~~~G~~v~  186 (269)
                      +.....||+|+-.-+.         ...++.+.+.|++| |.++.
T Consensus       100 l~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkpg-G~lii  143 (251)
T d1wzna1         100 IAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPG-GVFIT  143 (251)
T ss_dssp             CCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred             cccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCC-cEEEE
Confidence            2223379988754321         13577889999996 98865

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.14  E-value=0.00085  Score=51.01  Aligned_cols=103  Identities=18%  Similarity=0.099  Sum_probs=66.6

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCceeeCCCCCCCccHHHHHHhhhC
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMTDFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      ....++||++||-+|+|+ |..+..+++......|++++.+++..+.+++.    +....+....   .... ....  .
T Consensus        68 ~~l~ikpG~~VLDlGcGs-G~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~---~~~~-~~~~--~  140 (230)
T d1g8sa_          68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA---NKPQ-EYAN--I  140 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT---TCGG-GGTT--T
T ss_pred             HhCCCCCCCEEEEeCEEc-CHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEee---ccCc-cccc--c
Confidence            456789999999999986 88888888875444999999999888877653    2222222221   1110 1111  1


Q ss_pred             CCCccEEEEccCCh----hHHHHHHHHcccCCcEEEEEc
Q 024295          154 GMGVDYCFECTGVP----SLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       154 ~~~~d~v~d~~g~~----~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ...+|+++..+...    ..+..+.+.|++| |.++..-
T Consensus       141 ~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpg-G~~~i~~  178 (230)
T d1g8sa_         141 VEKVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIAI  178 (230)
T ss_dssp             CCCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cceeEEeeccccchHHHHHHHHHHHHhcccC-ceEEEEe
Confidence            12566666655322    2367788899996 9887763

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.12  E-value=0.0029  Score=43.38  Aligned_cols=74  Identities=18%  Similarity=0.164  Sum_probs=54.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceee-CCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      +|+|.|.|.+|...++.+...|. .|++++.++++.+.+++ ++...+. |..+   .+   .+.+. +=..+|.++-++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~---~~---~l~~~-~i~~a~~vv~~t   73 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDALVINGDCTK---IK---TLEDA-GIEDADMYIAVT   73 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSEEEESCTTS---HH---HHHHT-TTTTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhhhhhhccCcccc---hh---hhhhc-ChhhhhhhcccC
Confidence            58999999999999999999999 99999999999988865 5654333 2222   22   23332 223789999888


Q ss_pred             CChh
Q 024295          165 GVPS  168 (269)
Q Consensus       165 g~~~  168 (269)
                      +.+.
T Consensus        74 ~~d~   77 (132)
T d1lssa_          74 GKEE   77 (132)
T ss_dssp             SCHH
T ss_pred             CcHH
Confidence            7653

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.11  E-value=0.00073  Score=52.13  Aligned_cols=104  Identities=16%  Similarity=0.305  Sum_probs=66.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-----HhCCCce---eeCCCCCCCccHHHHHHhhhCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-----KAFGMTD---FINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      +++++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+     ++.|...   ..|-.+  +++..+.+.+....
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN--YEEVKKLLEAVKEK   80 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            5889999986 8999999999999999 999999998766543     2345432   223332  12232223322111


Q ss_pred             -CCccEEEEccCChh-------------------------HHHHHHHHccc-CCcEEEEEccC
Q 024295          155 -MGVDYCFECTGVPS-------------------------LLSEALETTKV-GKGKVIVIGVG  190 (269)
Q Consensus       155 -~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~-~~G~~v~~g~~  190 (269)
                       .++|++++++|...                         ..+.++..++. +.|+++.++..
T Consensus        81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~  143 (251)
T d1vl8a_          81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSL  143 (251)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccc
Confidence             27999999987511                         24455666643 23799988753

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.11  E-value=0.0034  Score=48.80  Aligned_cols=104  Identities=22%  Similarity=0.220  Sum_probs=66.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCc-chHHH----HHhCCCceee---CCCCCCCccHHHHHHhhhCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNP-WKKEK----GKAFGMTDFI---NPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~-~~~~~----~~~~g~~~v~---~~~~~~~~~~~~~i~~~~~~  154 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.++++. +..+.    +++.+.+...   |-.+  +++..+.+.+....
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~--~~~v~~~~~~~~~~   93 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV--VEDIVRMFEEAVKI   93 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCC--HHHHHHHHHHHHHH
Confidence            5899999986 8999999999999999 898887664 33332    3455543322   2222  23333333333211


Q ss_pred             -CCccEEEEccCChh-------------------------HHHHHHHHcccCCcEEEEEccCC
Q 024295          155 -MGVDYCFECTGVPS-------------------------LLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       155 -~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                       .++|+++++.|...                         ..+.++..+..+ |+++.++...
T Consensus        94 ~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-g~~i~i~s~~  155 (272)
T d1g0oa_          94 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSIT  155 (272)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCGG
T ss_pred             hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccc-cccccccccc
Confidence             27999999886511                         245666777885 8888876443

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.10  E-value=0.0012  Score=51.09  Aligned_cols=79  Identities=19%  Similarity=0.220  Sum_probs=53.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc---eeeCCCCCCCccHHHHHHh---hh
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT---DFINPDDEPNKSISELVKG---IT  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~---~v~~~~~~~~~~~~~~i~~---~~  152 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.    +.+..   ...|-.+  +++..+.+.+   ..
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL--RPEREKLMQTVSSMF   83 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCC--HHHHHHHHHHHHHHh
Confidence            6899999986 8999999999999999 9999999987776543    23322   1223332  1223222322   22


Q ss_pred             CCCCccEEEEccCC
Q 024295          153 HGMGVDYCFECTGV  166 (269)
Q Consensus       153 ~~~~~d~v~d~~g~  166 (269)
                      ++ .+|++++++|.
T Consensus        84 ~g-~idilvnnAG~   96 (259)
T d1xq1a_          84 GG-KLDILINNLGA   96 (259)
T ss_dssp             TT-CCSEEEEECCC
T ss_pred             CC-Ccccccccccc
Confidence            34 69999999875

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.08  E-value=0.0012  Score=51.16  Aligned_cols=79  Identities=23%  Similarity=0.367  Sum_probs=53.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCce---eeCCCCCCCccHHHHHHhhhC--
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTD---FINPDDEPNKSISELVKGITH--  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~~--  153 (269)
                      +|+++||+|+ +++|.+.+..+...|+ +|+.+++++++.+.+.    +.|...   ..|-.+  +++..+.+.+...  
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   80 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS--EEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            6899999986 8999999999999999 9999999988776553    344322   223322  1222322322211  


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      + ++|++++++|.
T Consensus        81 g-~iDilVnnaG~   92 (260)
T d1zema1          81 G-KIDFLFNNAGY   92 (260)
T ss_dssp             S-CCCEEEECCCC
T ss_pred             C-CCCeehhhhcc
Confidence            3 79999998874

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00075  Score=52.19  Aligned_cols=78  Identities=18%  Similarity=0.182  Sum_probs=53.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce---eeCCCCCCCccHHHHH---Hhhh
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD---FINPDDEPNKSISELV---KGIT  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i---~~~~  152 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.|...   ..|-.+  +++..+.+   .+..
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~--~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS--EQELSALADFAISKL   86 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            6899999986 8999999999999999 999999998776654    3455332   223222  12222222   2222


Q ss_pred             CCCCccEEEEccCC
Q 024295          153 HGMGVDYCFECTGV  166 (269)
Q Consensus       153 ~~~~~d~v~d~~g~  166 (269)
                       + ++|++++++|.
T Consensus        87 -g-~iDilvnnAG~   98 (255)
T d1fmca_          87 -G-KVDILVNNAGG   98 (255)
T ss_dssp             -S-SCCEEEECCCC
T ss_pred             -C-CCCEeeeCCcC
Confidence             3 79999999875

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.08  E-value=0.0011  Score=50.76  Aligned_cols=166  Identities=20%  Similarity=0.232  Sum_probs=94.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCcee---eCCCCCCCccHHHHHHhhhC--CCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDF---INPDDEPNKSISELVKGITH--GMG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v---~~~~~~~~~~~~~~i~~~~~--~~~  156 (269)
                      +|+++||+|+ +++|.+.++-+...|+ +|+.+++++++.+.+ ++++.+..   .|-.+  +++..+.+.+...  + +
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~--~~~i~~~~~~i~~~~g-~   79 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSD--PKAVEAVFAEALEEFG-R   79 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTS--HHHHHHHHHHHHHHHS-C
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCceEEEEecCCC--HHHHHHHHHHHHHHhC-C
Confidence            6899999986 8999999999999999 999999998877665 44664322   23332  2233232333221  3 7


Q ss_pred             ccEEEEccCChh-------------------------HHHHHHHHcccCCcEEEEEccCCCc-cccchh-----------
Q 024295          157 VDYCFECTGVPS-------------------------LLSEALETTKVGKGKVIVIGVGVDA-MVPLNV-----------  199 (269)
Q Consensus       157 ~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~~~-~~~~~~-----------  199 (269)
                      +|+++++++...                         ..+..+..++.+ +.++..+..... ......           
T Consensus        80 iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~-~~i~~~ss~a~~~~~~~~~Y~~sK~al~~l  158 (241)
T d2a4ka1          80 LHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEG-GSLVLTGSVAGLGAFGLAHYAAGKLGVVGL  158 (241)
T ss_dssp             CCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTT-CEEEEECCCTTCCHHHHHHHHHCSSHHHHH
T ss_pred             ccEeccccccccccchhhhhccccccccccccccccccccccccccccc-cceeeccccccccccCccccchhhHHHHHH
Confidence            999999886411                         234445566664 666666544321 111111           


Q ss_pred             -----HhhhhCCceEEeeeccCCCCC---CcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcC
Q 024295          200 -----IALACGGRTLKGTTFGGIKTK---SDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ  259 (269)
Q Consensus       200 -----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~  259 (269)
                           ..+..+++++.....+...+.   ...++..+.+.+. ....    .....+++-++..++-+
T Consensus       159 t~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~-~p~~----r~~~p~dva~~v~fL~S  221 (241)
T d2a4ka1         159 ARTLALELARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGA-SPLG----RAGRPEEVAQAALFLLS  221 (241)
T ss_dssp             HHHHHHHHTTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHT-STTC----SCBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhHhCCEEeeeccCcCCCHHHHhhhHhHHHHHHhC-CCCC----CCcCHHHHHHHHHHHhc
Confidence                 112245677776666554321   1122333333222 1121    12245788888887754

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.0019  Score=49.52  Aligned_cols=106  Identities=15%  Similarity=0.157  Sum_probs=67.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc-e--eeCCCCCCCccHHHHHHhhhC-C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT-D--FINPDDEPNKSISELVKGITH-G  154 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~--v~~~~~~~~~~~~~~i~~~~~-~  154 (269)
                      .|+++||+|+ +++|.+.+.-+...|+ +|+.+++++++.+.+.    ..|.. +  ..|..+  .++..+.+.+... -
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN--REDIYSSAKKVKAEI   82 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC--HHHHHHHHHHHHHHc
Confidence            5899999986 8999998888888899 9999999998877553    34432 1  233333  2223333333211 1


Q ss_pred             CCccEEEEccCChh-------------------------HHHHHHHHccc-CCcEEEEEccCCC
Q 024295          155 MGVDYCFECTGVPS-------------------------LLSEALETTKV-GKGKVIVIGVGVD  192 (269)
Q Consensus       155 ~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~-~~G~~v~~g~~~~  192 (269)
                      ..+|++++++|...                         ..+.++..+.. +.|+++.++...+
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~  146 (244)
T d1yb1a_          83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAG  146 (244)
T ss_dssp             CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-
T ss_pred             CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchh
Confidence            27999999997511                         22344444433 2488998886654

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.02  E-value=0.00034  Score=53.97  Aligned_cols=82  Identities=21%  Similarity=0.214  Sum_probs=53.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhCC-Cc-eee--CCCC-CCCccHHHHHHhhhCCCCc
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAA-KIIGIDKNPWKKEKGKAFG-MT-DFI--NPDD-EPNKSISELVKGITHGMGV  157 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~-~v~~~~~~~~~~~~~~~~g-~~-~v~--~~~~-~~~~~~~~~i~~~~~~~~~  157 (269)
                      .++|||+|+ +++|.+.++.+...|+. +|+.++|++++.+.+++.. .. +++  |-.+ .+...+.+.+.+..+..++
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~i   82 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGL   82 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCe
Confidence            378999986 89999988877777863 7899999999888887743 21 222  3322 0011223333333344469


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++++|.
T Consensus        83 dilinnAG~   91 (250)
T d1yo6a1          83 SLLINNAGV   91 (250)
T ss_dssp             CEEEECCCC
T ss_pred             EEEEEcCcc
Confidence            999999874

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.01  E-value=0.0019  Score=50.85  Aligned_cols=79  Identities=13%  Similarity=0.062  Sum_probs=52.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-----hCCCc-eee--CCCCCCCccHHHH-HHhhh-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-----AFGMT-DFI--NPDDEPNKSISEL-VKGIT-  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-----~~g~~-~v~--~~~~~~~~~~~~~-i~~~~-  152 (269)
                      +|+++||+|+ +++|.+.+..+...|+ +|+.+++++++.+.+.     +.|.. ..+  |-.+   .+-.+. +.... 
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~---~~~v~~~~~~~~~   99 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD---PDMVQNTVSELIK   99 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC---HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccC---hHHHHHHhhhhhh
Confidence            5799999985 8999999999999999 9999999987665432     23432 222  3222   332222 22221 


Q ss_pred             CCCCccEEEEccCC
Q 024295          153 HGMGVDYCFECTGV  166 (269)
Q Consensus       153 ~~~~~d~v~d~~g~  166 (269)
                      ...++|++++++|.
T Consensus       100 ~~g~iDilvnnAg~  113 (294)
T d1w6ua_         100 VAGHPNIVINNAAG  113 (294)
T ss_dssp             HTCSCSEEEECCCC
T ss_pred             hccccchhhhhhhh
Confidence            12389999999875

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.99  E-value=0.0018  Score=49.99  Aligned_cols=79  Identities=15%  Similarity=0.145  Sum_probs=52.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce---eeCCCCCCCccHHHHHHhhhC-CC
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD---FINPDDEPNKSISELVKGITH-GM  155 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~  155 (269)
                      |+.+||+|+ +++|.+.+..+...|+ +|+.+++++++.+.+    ++.|...   ..|-.+  +++..+.+.+... -.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~--~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS--VPEIEALVAAVVERYG   78 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCC--HHHHHHHHHHHHHHhC
Confidence            567799986 8999999999999999 999999998776654    3345332   223332  1233333333221 12


Q ss_pred             CccEEEEccCC
Q 024295          156 GVDYCFECTGV  166 (269)
Q Consensus       156 ~~d~v~d~~g~  166 (269)
                      ++|++++++|.
T Consensus        79 ~iDilVnnAG~   89 (257)
T d2rhca1          79 PVDVLVNNAGR   89 (257)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEecccc
Confidence            79999999875

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.98  E-value=0.0017  Score=46.83  Aligned_cols=71  Identities=15%  Similarity=0.128  Sum_probs=49.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CC---CceeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FG---MTDFINPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g---~~~v~~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      ..++++|+|+|+|+.+.+++..+...+ ++++.+.|+.++.+.+.+ ++   ....+...+             ..-..+
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~-------------~~~~~~   80 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAERFQPYGNIQAVSMDS-------------IPLQTY   80 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG-------------CCCSCC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccC-ceeeeccchHHHHHHHHHHHhhccccchhhhcc-------------cccccc
Confidence            447899999999999999888777655 599999999888776544 32   111221111             112379


Q ss_pred             cEEEEccCC
Q 024295          158 DYCFECTGV  166 (269)
Q Consensus       158 d~v~d~~g~  166 (269)
                      |++++|+..
T Consensus        81 diiIN~tp~   89 (171)
T d1p77a1          81 DLVINATSA   89 (171)
T ss_dssp             SEEEECCCC
T ss_pred             ceeeecccc
Confidence            999999864

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.98  E-value=0.0049  Score=43.33  Aligned_cols=83  Identities=17%  Similarity=0.242  Sum_probs=57.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      +|.++|+|.+|.+.++-+...|..++++.++++++.+.+++ +|.. +.+..+    .    +      ...|+||=|+-
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~-~~~~~~----~----v------~~~Div~lavk   66 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVE-TSATLP----E----L------HSDDVLILAVK   66 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCE-EESSCC----C----C------CTTSEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccc-cccccc----c----c------cccceEEEecC
Confidence            57899999999988774443453499999999999888765 6654 333222    1    1      15799998886


Q ss_pred             ChhHHHHHHHHcccCCcEEEE
Q 024295          166 VPSLLSEALETTKVGKGKVIV  186 (269)
Q Consensus       166 ~~~~~~~~~~~l~~~~G~~v~  186 (269)
                       |..+...++.+++. ++++.
T Consensus        67 -P~~~~~v~~~l~~~-~~~vi   85 (152)
T d1yqga2          67 -PQDMEAACKNIRTN-GALVL   85 (152)
T ss_dssp             -HHHHHHHHTTCCCT-TCEEE
T ss_pred             -HHHHHHhHHHHhhc-ccEEe
Confidence             45677778777774 65543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.96  E-value=0.0027  Score=46.99  Aligned_cols=111  Identities=21%  Similarity=0.222  Sum_probs=74.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      -+|.+|+|.|.|.+|..+++++...|+ +|++.+.++++......+|.+.+ ..     ++       +.. .+.|+.+-
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~~~g~~~~-~~-----~~-------~~~-~~~DI~iP   89 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTAV-AL-----ED-------VLS-TPCDVFAP   89 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC-CG-----GG-------GGG-CCCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHHhhccccc-Cc-----cc-------ccc-ccceeeec
Confidence            368999999999999999999999999 99999999888888888886643 22     11       111 27899998


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEccCCCccccch-h-HhhhhCCceEEeee
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLN-V-IALACGGRTLKGTT  213 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~-~-~~~~~~~~~~~~~~  213 (269)
                      |..+...-.+..+.++.   +++ ++.... +...+ . ..+..|++.+.+-.
T Consensus        90 cA~~~~I~~~~a~~i~a---k~i-~e~AN~-p~~~~~~~~~L~~rgI~~iPD~  137 (201)
T d1c1da1          90 CAMGGVITTEVARTLDC---SVV-AGAANN-VIADEAASDILHARGILYAPDF  137 (201)
T ss_dssp             CSCSCCBCHHHHHHCCC---SEE-CCSCTT-CBCSHHHHHHHHHTTCEECCHH
T ss_pred             ccccccccHHHHhhhhh---hee-eccCCC-CcchhhHHHHhcccceEEEehh
Confidence            87544344455566654   333 443332 22222 2 23456788776644

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.96  E-value=0.00014  Score=55.92  Aligned_cols=76  Identities=14%  Similarity=0.138  Sum_probs=50.7

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCC-CCccEEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHG-MGVDYCF  161 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~-~~~d~v~  161 (269)
                      +++++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+..    ...|-.+  +++..+.+.+.... .++|+++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~----~~~Dv~~--~~~v~~~~~~~~~~~g~iDiLV   78 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLFG----VEVDVTD--SDAVDRAFTAVEEHQGPVEVLV   78 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSEE----EECCTTC--HHHHHHHHHHHHHHHSSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcchhcCceE----EEEecCC--HHHHHHHHHHHHHhcCCceEEE
Confidence            6899999986 8999999999999999 99999998766543321    1223332  12222222222111 2799999


Q ss_pred             EccCC
Q 024295          162 ECTGV  166 (269)
Q Consensus       162 d~~g~  166 (269)
                      +++|.
T Consensus        79 nnAG~   83 (237)
T d1uzma1          79 SNAGL   83 (237)
T ss_dssp             EECSC
T ss_pred             eeecc
Confidence            99875

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.0013  Score=50.68  Aligned_cols=79  Identities=20%  Similarity=0.263  Sum_probs=53.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-C----C-Cc---eeeCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-F----G-MT---DFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~----g-~~---~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+ +    + ..   ...|-.+  .++..+.+.+...
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~   78 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD--QQQLRDTFRKVVD   78 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCC--HHHHHHHHHHHHH
Confidence            5789999986 8999999999999999 99999999887665432 2    1 11   1223332  1223333333221


Q ss_pred             --CCCccEEEEccCC
Q 024295          154 --GMGVDYCFECTGV  166 (269)
Q Consensus       154 --~~~~d~v~d~~g~  166 (269)
                        + ++|++++++|.
T Consensus        79 ~~G-~iDilVnnAg~   92 (254)
T d2gdza1          79 HFG-RLDILVNNAGV   92 (254)
T ss_dssp             HHS-CCCEEEECCCC
T ss_pred             HcC-CcCeecccccc
Confidence              3 79999999975

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.002  Score=48.68  Aligned_cols=107  Identities=8%  Similarity=-0.029  Sum_probs=66.4

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CCce------------eeCCCCCCCccH
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GMTD------------FINPDDEPNKSI  144 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~~~------------v~~~~~~~~~~~  144 (269)
                      ....+.++.+||..|+|. |..+..+|+ .|+ +|+++|.+++..+.+++. +...            ..........-.
T Consensus        39 ~~l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  115 (229)
T d2bzga1          39 TFLKGKSGLRVFFPLCGK-AVEMKWFAD-RGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLY  115 (229)
T ss_dssp             HHHTTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEE
T ss_pred             HhcCCCCCCEEEEeCCCC-cHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEE
Confidence            445678899999999987 888888887 599 999999999888777652 2110            000000000000


Q ss_pred             HHHHHhh--hCCCCccEEEEccCC--------hhHHHHHHHHcccCCcEEEEEc
Q 024295          145 SELVKGI--THGMGVDYCFECTGV--------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       145 ~~~i~~~--~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ...+.++  .....+|+|+++.--        ...+..+.+.++|| |++++..
T Consensus       116 ~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg-G~~~l~~  168 (229)
T d2bzga1         116 CCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK-FQYLLCV  168 (229)
T ss_dssp             ESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             EcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc-ceEEEEE
Confidence            0001111  122378999986521        23567889999996 9877664

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.91  E-value=0.0013  Score=50.67  Aligned_cols=78  Identities=19%  Similarity=0.263  Sum_probs=53.5

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCC--c-ee--eCCCCCCCcc---HHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGM--T-DF--INPDDEPNKS---ISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~--~-~v--~~~~~~~~~~---~~~~i~~~~~  153 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+ ++.  . ..  .|-.+  +++   +.+.+.+.. 
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~-   80 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD--EDGWTKLFDATEKAF-   80 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCC--HHHHHHHHHHHHHHh-
Confidence            5899999986 8999999999999999 99999999888776543 321  1 12  23222  122   222333323 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      + ++|++++++|.
T Consensus        81 G-~iDiLVnnAg~   92 (251)
T d1zk4a1          81 G-PVSTLVNNAGI   92 (251)
T ss_dssp             S-SCCEEEECCCC
T ss_pred             C-CceEEEecccc
Confidence            3 79999999875

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.0075  Score=48.15  Aligned_cols=104  Identities=18%  Similarity=0.236  Sum_probs=69.2

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-----------CC----CceeeCCCCCC
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-----------FG----MTDFINPDDEP  140 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-----------~g----~~~v~~~~~~~  140 (269)
                      +....+++++++||-+|+|. |..+.++|+..++.++++++.+++..+.+++           +|    .-.++..+- .
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~-~  220 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF-L  220 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT-T
T ss_pred             HHHHcCCCCCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc-c
Confidence            45778899999999999986 9999999999998789999999877666543           12    112222211 0


Q ss_pred             CccHHHHHHhhhCCCCccEEEEc-cCC-h---hHHHHHHHHcccCCcEEEEEc
Q 024295          141 NKSISELVKGITHGMGVDYCFEC-TGV-P---SLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       141 ~~~~~~~i~~~~~~~~~d~v~d~-~g~-~---~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ..++.+.+.      .+|+|+-. .-. +   ..+.++++.+++| |++|..-
T Consensus       221 ~~~~~~~~~------~advi~~~~~~f~~~~~~~l~e~~r~LKpG-g~iv~~~  266 (328)
T d1nw3a_         221 SEEWRERIA------NTSVIFVNNFAFGPEVDHQLKERFANMKEG-GRIVSSK  266 (328)
T ss_dssp             SHHHHHHHH------HCSEEEECCTTTCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred             ccccccccC------cceEEEEcceecchHHHHHHHHHHHhCCCC-cEEEEec
Confidence            123333222      35777632 211 1   2466788889997 9998764

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.90  E-value=0.0019  Score=49.53  Aligned_cols=80  Identities=15%  Similarity=0.150  Sum_probs=52.6

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchH--HHHHhCCCce---eeCCCCCCCccHHHHHHhhhCC-CC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKK--EKGKAFGMTD---FINPDDEPNKSISELVKGITHG-MG  156 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~--~~~~~~g~~~---v~~~~~~~~~~~~~~i~~~~~~-~~  156 (269)
                      +++++||+|+ +++|.+.++.+...|+ +|+..++++++.  +.+++.|...   ..|-.+  +++..+.+.+.... .+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~--~~~v~~~~~~~~~~~G~   80 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ--PGDVEAFGKQVISTFGR   80 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHcCCcEEEEEeeCCC--HHHHHHHHHHHHHHcCC
Confidence            5789999986 8999999999999999 999999876432  3345566432   223332  12232222222111 27


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|++++++|.
T Consensus        81 iDilVnnAG~   90 (247)
T d2ew8a1          81 CDILVNNAGI   90 (247)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999875

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.89  E-value=0.011  Score=41.87  Aligned_cols=88  Identities=17%  Similarity=0.158  Sum_probs=59.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      ++|.++|.|.+|...+.-+...|+ .|.+.++++++.+.++..+....        .+..+.+.      ..|+++-++.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~--------~~~~e~~~------~~diii~~v~   66 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAAGASAA--------RSARDAVQ------GADVVISMLP   66 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCEEC--------SSHHHHHT------SCSEEEECCS
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhhhcccc--------chhhhhcc------ccCeeeeccc
Confidence            468899999999988777777899 99999999999988888775432        12222221      5678887776


Q ss_pred             ChhHHHHHH-------HHcccCCcEEEEEcc
Q 024295          166 VPSLLSEAL-------ETTKVGKGKVIVIGV  189 (269)
Q Consensus       166 ~~~~~~~~~-------~~l~~~~G~~v~~g~  189 (269)
                      ........+       ..+.++ -.++.++.
T Consensus        67 ~~~~~~~v~~~~~~~~~~l~~g-~iiid~st   96 (162)
T d3cuma2          67 ASQHVEGLYLDDDGLLAHIAPG-TLVLECST   96 (162)
T ss_dssp             CHHHHHHHHHSTTCHHHHSCTT-CEEEECSC
T ss_pred             chhhHHHHHhccccccccCCCC-CEEEECCC
Confidence            655444332       234453 45555543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.88  E-value=0.0038  Score=46.61  Aligned_cols=94  Identities=20%  Similarity=0.234  Sum_probs=62.2

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC-ceeeCCCCCCCccHHHHHHhhhCCC
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM-TDFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      -++++.+||-+|+|+ |..+..+++. |. +|+++|.+++..+.+++    .+. ...+..+.   .++     .. ...
T Consensus        34 ~l~~~~~ILDiGcG~-G~~~~~la~~-~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~---~~l-----~~-~~~  101 (226)
T d1ve3a1          34 YMKKRGKVLDLACGV-GGFSFLLEDY-GF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDA---RKL-----SF-EDK  101 (226)
T ss_dssp             SCCSCCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT---TSC-----CS-CTT
T ss_pred             hcCCCCEEEEECCCc-chhhhhHhhh-hc-ccccccccccchhhhhhhhcccccccccccccc---ccc-----cc-cCc
Confidence            357889999999987 8888888874 77 99999999988877765    232 11221111   111     01 223


Q ss_pred             CccEEEEccC-----C---hhHHHHHHHHcccCCcEEEEE
Q 024295          156 GVDYCFECTG-----V---PSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       156 ~~d~v~d~~g-----~---~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      .||+|+-.-.     .   ...+..+.+.|+|| |+++..
T Consensus       102 ~fD~I~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~lii~  140 (226)
T d1ve3a1         102 TFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPS-GKFIMY  140 (226)
T ss_dssp             CEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             CceEEEEecchhhCChhHHHHHHHHHHHHcCcC-cEEEEE
Confidence            7998864322     1   12477889999996 998654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.88  E-value=0.0013  Score=50.88  Aligned_cols=79  Identities=18%  Similarity=0.261  Sum_probs=53.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-----HhCCCce---eeCCCCCCCccHHHHHHhhh--
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-----KAFGMTD---FINPDDEPNKSISELVKGIT--  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-----~~~g~~~---v~~~~~~~~~~~~~~i~~~~--  152 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+     ++.|...   ..|-.+  +++..+.+.+..  
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~   84 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN--TDIVTKTIQQIDAD   84 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHH
Confidence            5789999986 8999999999999999 999999988766543     2345332   223332  122333333322  


Q ss_pred             CCCCccEEEEccCC
Q 024295          153 HGMGVDYCFECTGV  166 (269)
Q Consensus       153 ~~~~~d~v~d~~g~  166 (269)
                      -+ ++|+++++.|.
T Consensus        85 ~g-~iDilVnnAg~   97 (260)
T d1h5qa_          85 LG-PISGLIANAGV   97 (260)
T ss_dssp             SC-SEEEEEECCCC
T ss_pred             hC-CCcEecccccc
Confidence            23 89999998864

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.85  E-value=0.0013  Score=51.01  Aligned_cols=79  Identities=16%  Similarity=0.178  Sum_probs=51.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc-hHH----HHHhCCCcee---eCCCCCCCccHHHHHHhhh--
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW-KKE----KGKAFGMTDF---INPDDEPNKSISELVKGIT--  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~-~~~----~~~~~g~~~v---~~~~~~~~~~~~~~i~~~~--  152 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.++++.+ +.+    .+++.|.+..   .|-.+  +++..+.+.+..  
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~~~   82 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV--ESDVINLVQSAIKE   82 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            6789999986 8999999988888999 9999998754 333    2344554322   23322  122222233221  


Q ss_pred             CCCCccEEEEccCC
Q 024295          153 HGMGVDYCFECTGV  166 (269)
Q Consensus       153 ~~~~~d~v~d~~g~  166 (269)
                      -+ ++|++++++|.
T Consensus        83 ~G-~iDiLVnnAG~   95 (261)
T d1geea_          83 FG-KLDVMINNAGL   95 (261)
T ss_dssp             HS-CCCEEEECCCC
T ss_pred             hC-CCCEeecccee
Confidence            13 79999999875

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.82  E-value=0.003  Score=48.51  Aligned_cols=167  Identities=17%  Similarity=0.135  Sum_probs=93.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCce---eeCCCCCCCccHHHHHHhhh--C
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTD---FINPDDEPNKSISELVKGIT--H  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~--~  153 (269)
                      +++.+||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.    +.|...   ..|-.+  +++..+.+.+..  -
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~~~~   85 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK--KEEISEVINKILTEH   85 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHhc
Confidence            5788999986 8999999998888999 9999999987766543    345322   223322  122333333221  2


Q ss_pred             CCCccEEEEccCChh-------------------------HHHHHHHHcc-cCCcEEEEEccCCC-c-cccchh------
Q 024295          154 GMGVDYCFECTGVPS-------------------------LLSEALETTK-VGKGKVIVIGVGVD-A-MVPLNV------  199 (269)
Q Consensus       154 ~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~-~~~G~~v~~g~~~~-~-~~~~~~------  199 (269)
                      + ++|+++++.|...                         ..+.++..+. .+.|++|.++...+ . ......      
T Consensus        86 g-~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~~~Y~asKa  164 (251)
T d2c07a1          86 K-NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKA  164 (251)
T ss_dssp             S-CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHH
T ss_pred             C-CceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCCCCCHHHHHHHH
Confidence            3 8999999886511                         1233444442 22499999985543 1 111111      


Q ss_pred             ----------HhhhhCCceEEeeeccCCCCC---CcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHhcC
Q 024295          200 ----------IALACGGRTLKGTTFGGIKTK---SDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLLKQ  259 (269)
Q Consensus       200 ----------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~~~  259 (269)
                                ..+..+++++.....+...+.   +..++..+.+.+.. ..    .+...-+++-++..+|-+
T Consensus       165 al~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~-pl----~R~~~pedvA~~v~fL~S  232 (251)
T d2c07a1         165 GVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISNI-PA----GRMGTPEEVANLACFLSS  232 (251)
T ss_dssp             HHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHHHHHHTTC-TT----SSCBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhhhhCeEEEEEccCCEecccccccCHHHHHHHHhcC-CC----CCCcCHHHHHHHHHHHhC
Confidence                      112246777776666554321   22334444443331 11    122345778777776654

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.81  E-value=0.0014  Score=50.57  Aligned_cols=80  Identities=16%  Similarity=0.103  Sum_probs=49.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC-c---eeeCCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM-T---DFINPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~-~---~v~~~~~~~~~~~~~~i~~~~~-  153 (269)
                      +|+++||+|+ +++|.+.+..+...|+ +|+.+.++.++.+.+.+    .+. .   ...|... +..+..+.+.+... 
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~   81 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTV-PVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTS-CHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCC-CHHHHHHHHHHHHHH
Confidence            5899999986 8999999888888899 87777766665554432    222 1   1222221 01223222332221 


Q ss_pred             -CCCccEEEEccCC
Q 024295          154 -GMGVDYCFECTGV  166 (269)
Q Consensus       154 -~~~~d~v~d~~g~  166 (269)
                       + ++|++++++|.
T Consensus        82 ~g-~iDilvnnAG~   94 (254)
T d1sbya1          82 LK-TVDILINGAGI   94 (254)
T ss_dssp             HS-CCCEEEECCCC
T ss_pred             cC-CCCEEEeCCCC
Confidence             3 79999999985

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=96.80  E-value=0.005  Score=47.32  Aligned_cols=83  Identities=17%  Similarity=0.194  Sum_probs=53.0

Q ss_pred             CCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcch---H----HHHHhCCCcee---eCCCCCCCccHHHHH-
Q 024295           81 KVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWK---K----EKGKAFGMTDF---INPDDEPNKSISELV-  148 (269)
Q Consensus        81 ~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~---~----~~~~~~g~~~v---~~~~~~~~~~~~~~i-  148 (269)
                      .++|+.++||+|+ |++|++.+..+...|+++|+.+.|++.+   .    +.++..|....   .|-.+   .+-.+.+ 
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d---~~~~~~~~   81 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTD---RESVRELL   81 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC---HHHHHHHH
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccch---HHHHHHhh
Confidence            5788999999985 8999999888888898668877775322   1    22334565322   23332   3333333 


Q ss_pred             HhhhCCCCccEEEEccCC
Q 024295          149 KGITHGMGVDYCFECTGV  166 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~g~  166 (269)
                      ..+.....+|.++++.|.
T Consensus        82 ~~i~~~~~i~~vv~~ag~   99 (259)
T d2fr1a1          82 GGIGDDVPLSAVFHAAAT   99 (259)
T ss_dssp             HTSCTTSCEEEEEECCCC
T ss_pred             cccccccccccccccccc
Confidence            333333478999998875

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=96.78  E-value=0.0039  Score=47.01  Aligned_cols=104  Identities=18%  Similarity=0.203  Sum_probs=69.8

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhh-
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGIT-  152 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~-  152 (269)
                      ..+..+.++||-+|++. |..++.+|+.+.. .+++.++.+++..+.+++    .|...-+....   .+..+.+.++. 
T Consensus        54 L~~~~~~k~iLEiGT~~-GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~---g~a~~~L~~l~~  129 (227)
T d1susa1          54 LLKLINAKNTMEIGVYT-GYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE---GPALPVLDEMIK  129 (227)
T ss_dssp             HHHHHTCCEEEEECCGG-GHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHH
T ss_pred             HHHhcCCCcEEEecchh-hhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeee---hHHHHHHHHHHh
Confidence            34445678999999864 9999999998742 399999999988887765    45433232222   34444444431 


Q ss_pred             ---CCCCccEEE-EccC--ChhHHHHHHHHcccCCcEEEEE
Q 024295          153 ---HGMGVDYCF-ECTG--VPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       153 ---~~~~~d~v~-d~~g--~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                         ....||.|| |+--  ....++.+++++++| |.++.=
T Consensus       130 ~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~g-Giii~D  169 (227)
T d1susa1         130 DEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYD  169 (227)
T ss_dssp             CGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEE
T ss_pred             ccccCCceeEEEeccchhhhHHHHHHHHhhcCCC-cEEEEc
Confidence               123799997 4432  233588999999996 887664

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.77  E-value=0.003  Score=48.64  Aligned_cols=80  Identities=18%  Similarity=0.331  Sum_probs=50.8

Q ss_pred             CCCeEEEEcC-C--hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHH---HhhhC
Q 024295           84 KGSSVAVLGL-G--TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELV---KGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g--~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i---~~~~~  153 (269)
                      +|+++||+|+ |  ++|.+.++.+...|+ +|+..+++++..+.+++    .+....+..+-.++++..+.+   .+.. 
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~-   84 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAF-   84 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhc-
Confidence            6899999996 5  699999988888999 89988888765554432    333333322210122222222   2222 


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      + ++|++++++|.
T Consensus        85 g-~iDilVnnag~   96 (256)
T d1ulua_          85 G-GLDYLVHAIAF   96 (256)
T ss_dssp             S-SEEEEEECCCC
T ss_pred             C-CceEEEecccc
Confidence            3 79999998864

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.0031  Score=49.72  Aligned_cols=80  Identities=15%  Similarity=0.195  Sum_probs=53.2

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH-hC--------CCce---eeCCCCCCCccHHHHHH
Q 024295           83 EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK-AF--------GMTD---FINPDDEPNKSISELVK  149 (269)
Q Consensus        83 ~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~-~~--------g~~~---v~~~~~~~~~~~~~~i~  149 (269)
                      -+|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. ++        +...   ..|-.+  +++..+.+.
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~   86 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN--EEEVNNLVK   86 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC--HHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCC--HHHHHHHHH
Confidence            47899999986 8999999999999999 9999999987765432 21        2221   123222  223333333


Q ss_pred             hhh--CCCCccEEEEccCC
Q 024295          150 GIT--HGMGVDYCFECTGV  166 (269)
Q Consensus       150 ~~~--~~~~~d~v~d~~g~  166 (269)
                      +..  -+ ++|++++++|.
T Consensus        87 ~~~~~~G-~iDiLVnnAg~  104 (297)
T d1yxma1          87 STLDTFG-KINFLVNNGGG  104 (297)
T ss_dssp             HHHHHHS-CCCEEEECCCC
T ss_pred             HHHHHhC-CeEEEEeeccc
Confidence            322  13 79999998874

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.77  E-value=0.0032  Score=48.56  Aligned_cols=78  Identities=22%  Similarity=0.237  Sum_probs=52.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----C--CCce---eeCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----F--GMTD---FINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~--g~~~---v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+    .  +...   ..|-.+  +++..+.+.+...
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~--~~~v~~~~~~~~~   79 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD--EAQVEAYVTATTE   79 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCC--HHHHHHHHHHHHH
Confidence            5789999986 8999999999999999 99999999887665432    2  2221   123332  1233322322211


Q ss_pred             --CCCccEEEEccC
Q 024295          154 --GMGVDYCFECTG  165 (269)
Q Consensus       154 --~~~~d~v~d~~g  165 (269)
                        + ++|++++++|
T Consensus        80 ~~G-~iDiLVnnAG   92 (258)
T d1iy8a_          80 RFG-RIDGFFNNAG   92 (258)
T ss_dssp             HHS-CCSEEEECCC
T ss_pred             HhC-CCCEEEECCc
Confidence              3 7999999887

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.77  E-value=0.0021  Score=49.40  Aligned_cols=76  Identities=17%  Similarity=0.128  Sum_probs=52.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC----CceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG----MTDFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g----~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      .+.||+|+ +++|++.+..+...|+ +|+..+++.++.+.++..+    ...+.+..+  ...+.+.+.+..+  ++|++
T Consensus         1 ~TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~--~~~~~~~~~~~~G--~iDiL   75 (252)
T d1zmta1           1 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMSEQE--PAELIEAVTSAYG--QVDVL   75 (252)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECCCCS--HHHHHHHHHHHHS--CCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhhhCcEEEeccCCHHH--HHHHHHHHHHHcC--CCCEE
Confidence            36899986 7899999998888999 9999999888877765532    222333322  2334444444443  79999


Q ss_pred             EEccCC
Q 024295          161 FECTGV  166 (269)
Q Consensus       161 ~d~~g~  166 (269)
                      +++.|.
T Consensus        76 VnNAg~   81 (252)
T d1zmta1          76 VSNDIF   81 (252)
T ss_dssp             EEECCC
T ss_pred             EECCcC
Confidence            987653

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.76  E-value=0.0019  Score=50.29  Aligned_cols=80  Identities=11%  Similarity=0.151  Sum_probs=52.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC--c----eeeCCCCCCCccHHHHHHhhh
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM--T----DFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~--~----~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+    .+.  .    ...|-.+  +++..+.+.+..
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~~~   80 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT--EDGQDQIINSTL   80 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCC--HHHHHHHHHHHH
Confidence            5789999986 8999999999999999 99999999887766532    331  1    1223332  122222232221


Q ss_pred             CC-CCccEEEEccCC
Q 024295          153 HG-MGVDYCFECTGV  166 (269)
Q Consensus       153 ~~-~~~d~v~d~~g~  166 (269)
                      .. .++|++++++|.
T Consensus        81 ~~~g~iDilvnnAG~   95 (272)
T d1xkqa_          81 KQFGKIDVLVNNAGA   95 (272)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHhCCceEEEeCCcc
Confidence            11 279999998764

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.74  E-value=0.0021  Score=50.10  Aligned_cols=79  Identities=19%  Similarity=0.256  Sum_probs=52.8

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCC--c----eeeCCCCCCCccHHHHHHhhh
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGM--T----DFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~--~----~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.    +.+.  .    ...|-.+  +++..+.+.+..
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   79 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE--ASGQDDIINTTL   79 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCC--HHHHHHHHHHHH
Confidence            5889999986 8999999999999999 9999999988776543    2332  1    1223332  122322233221


Q ss_pred             --CCCCccEEEEccCC
Q 024295          153 --HGMGVDYCFECTGV  166 (269)
Q Consensus       153 --~~~~~d~v~d~~g~  166 (269)
                        -+ .+|++++++|.
T Consensus        80 ~~~G-~iDilVnnAG~   94 (274)
T d1xhla_          80 AKFG-KIDILVNNAGA   94 (274)
T ss_dssp             HHHS-CCCEEEECCCC
T ss_pred             HHcC-CceEEEeeccc
Confidence              13 79999998863

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.012  Score=41.65  Aligned_cols=109  Identities=23%  Similarity=0.275  Sum_probs=73.8

Q ss_pred             HHHHHhcC-CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhh
Q 024295           74 GAAWKEAK-VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        74 ~~l~~~~~-~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      .++.+... .-.|++++|.|-|-+|...++.++..|+ +|++++..+-+.-.+.--|.. +        ..+.+.+    
T Consensus        12 ~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A~~dG~~-v--------~~~~~a~----   77 (163)
T d1li4a1          12 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINALQAAMEGYE-V--------TTMDEAC----   77 (163)
T ss_dssp             HHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-E--------CCHHHHT----
T ss_pred             HHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchhHHhhcCceE-e--------eehhhhh----
Confidence            34444444 4579999999999999999999999999 999999887554444444432 2        1122222    


Q ss_pred             CCCCccEEEEccCChh-HHHHHHHHcccCCcEEEEEccCCCccccchhHhh
Q 024295          153 HGMGVDYCFECTGVPS-LLSEALETTKVGKGKVIVIGVGVDAMVPLNVIAL  202 (269)
Q Consensus       153 ~~~~~d~v~d~~g~~~-~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~  202 (269)
                        ...|+++-++|... .-.+.++.++++ .-+...|...   .+++...+
T Consensus        78 --~~adivvtaTGn~~vI~~eh~~~MKdg-aIL~N~Ghfd---~EId~~~L  122 (163)
T d1li4a1          78 --QEGNIFVTTTGCIDIILGRHFEQMKDD-AIVCNIGHFD---VEIDVKWL  122 (163)
T ss_dssp             --TTCSEEEECSSCSCSBCHHHHTTCCTT-EEEEECSSST---TSBCHHHH
T ss_pred             --hhccEEEecCCCccchhHHHHHhccCC-eEEEEecccc---ceecHHHH
Confidence              15789999998743 346778889995 6666666543   34444443

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.74  E-value=0.0027  Score=50.75  Aligned_cols=106  Identities=25%  Similarity=0.231  Sum_probs=65.7

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhh-CC
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGIT-HG  154 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~-~~  154 (269)
                      ..++++++||-+++|+ |..++.+++. |+++|++++.+++..+.+++    .|...-+....   .+..+.+..+. .+
T Consensus       141 ~~~~~g~~VLDl~~g~-G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~---~d~~~~~~~~~~~~  215 (324)
T d2as0a2         141 KWVQPGDRVLDVFTYT-GGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIV---GSAFEEMEKLQKKG  215 (324)
T ss_dssp             GGCCTTCEEEETTCTT-THHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHHTT
T ss_pred             hhcCCCCeeecccCcc-cchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeee---chhhhhhHHHHhcc
Confidence            3467899999997754 4445555544 77799999999988888755    45421111111   33333333322 34


Q ss_pred             CCccEEE-EccCC--------------hhHHHHHHHHcccCCcEEEEEccCC
Q 024295          155 MGVDYCF-ECTGV--------------PSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       155 ~~~d~v~-d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      ..||+|+ |.-..              ...+..+++++++| |.++.+....
T Consensus       216 ~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pG-G~lv~~s~s~  266 (324)
T d2as0a2         216 EKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG-GILVTCSCSQ  266 (324)
T ss_dssp             CCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE-EEEEEEECCT
T ss_pred             CCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC-cEEEEEeCCc
Confidence            4899887 33211              11456778899996 9999886544

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0033  Score=48.89  Aligned_cols=102  Identities=21%  Similarity=0.334  Sum_probs=62.7

Q ss_pred             CCeE-EEEcC-ChhHHHHHH-HHHHcCCCeEEEEcCCcchHHHHH----hCCCc-e--eeCCCC-CCCccHHHHHHhhhC
Q 024295           85 GSSV-AVLGL-GTVGLGAVD-GARMHGAAKIIGIDKNPWKKEKGK----AFGMT-D--FINPDD-EPNKSISELVKGITH  153 (269)
Q Consensus        85 ~~~v-lI~G~-g~~G~~a~~-la~~~g~~~v~~~~~~~~~~~~~~----~~g~~-~--v~~~~~-~~~~~~~~~i~~~~~  153 (269)
                      |++| ||+|+ +++|++.++ +++..|+ +|+..+|++++.+.+.    ..+.. .  ..|-.+ .+...+.+.+.+.. 
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~-   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY-   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH-
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhc-
Confidence            5677 66786 899998765 5566688 9999999988876543    33422 1  223332 00111223333333 


Q ss_pred             CCCccEEEEccCChh-------------------------HHHHHHHHcccCCcEEEEEccC
Q 024295          154 GMGVDYCFECTGVPS-------------------------LLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       154 ~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      + ++|++++++|...                         ..+.++..+++. |+++.++..
T Consensus        80 g-~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-g~ivnisS~  139 (275)
T d1wmaa1          80 G-GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ-GRVVNVSSI  139 (275)
T ss_dssp             S-SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECCH
T ss_pred             C-CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccccccc
Confidence            3 7999999987410                         234455666775 999988753

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.70  E-value=0.0073  Score=42.68  Aligned_cols=94  Identities=17%  Similarity=0.224  Sum_probs=55.7

Q ss_pred             CeEEEEcCChhHH-HHHHHHHHcCCCeEEEEc-CCcc--hHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           86 SSVAVLGLGTVGL-GAVDGARMHGAAKIIGID-KNPW--KKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        86 ~~vlI~G~g~~G~-~a~~la~~~g~~~v~~~~-~~~~--~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      -++.|+|+|.+|. ...++.+....-.++++. ++++  ..++++++|.....        ...+.+.+..+..++|+||
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~--------~~~d~l~~~~~~~~iDiVf   76 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY--------AGVEGLIKLPEFADIDFVF   76 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES--------SHHHHHHHSGGGGGEEEEE
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccc--------cceeeeeecccccccCEEE
Confidence            4689999999987 466787765443666664 4443  34667788755322        2223333322223799999


Q ss_pred             EccCChhHHHHH--HHHcccCCcEEEEEc
Q 024295          162 ECTGVPSLLSEA--LETTKVGKGKVIVIG  188 (269)
Q Consensus       162 d~~g~~~~~~~~--~~~l~~~~G~~v~~g  188 (269)
                      +++....+....  .+.++.| -+++...
T Consensus        77 ~ATpag~h~~~~~~~~aa~~G-~~VID~s  104 (157)
T d1nvmb1          77 DATSASAHVQNEALLRQAKPG-IRLIDLT  104 (157)
T ss_dssp             ECSCHHHHHHHHHHHHHHCTT-CEEEECS
T ss_pred             EcCCchhHHHhHHHHHHHHcC-CEEEEcc
Confidence            998765555544  4445553 3444443

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.67  E-value=0.00095  Score=52.61  Aligned_cols=98  Identities=15%  Similarity=0.128  Sum_probs=62.7

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC----CCc-----eeeCCCCCCCccHHHHHHh
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF----GMT-----DFINPDDEPNKSISELVKG  150 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~----g~~-----~v~~~~~~~~~~~~~~i~~  150 (269)
                      .+.+++++||-+|+|. |..+..+++. |+ +|+++|.+++..+.+++.    +..     ..+..     .++...-..
T Consensus        52 l~~~~~~~vLD~GcG~-G~~~~~la~~-g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  123 (292)
T d1xvaa_          52 LRQHGCHRVLDVACGT-GVDSIMLVEE-GF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEE-----ANWLTLDKD  123 (292)
T ss_dssp             HHHTTCCEEEESSCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEE-----CCGGGHHHH
T ss_pred             hhhcCCCEEEEecCCC-cHHHHHHHHc-CC-eeeeccCchHHHHHHHHHHHhcccccccceeeeee-----ccccccccc
Confidence            3445678999999987 8888888876 88 999999999888777542    211     11111     111111122


Q ss_pred             hhCCCCccEEEEccCC--------------hhHHHHHHHHcccCCcEEEE
Q 024295          151 ITHGMGVDYCFECTGV--------------PSLLSEALETTKVGKGKVIV  186 (269)
Q Consensus       151 ~~~~~~~d~v~d~~g~--------------~~~~~~~~~~l~~~~G~~v~  186 (269)
                      .-....+|.|+..-..              ...+..+.+.|+|| |.++.
T Consensus       124 ~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~  172 (292)
T d1xvaa_         124 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG-GLLVI  172 (292)
T ss_dssp             SCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE-EEEEE
T ss_pred             cCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcC-cEEEE
Confidence            2223479988753211              12578899999996 98876

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.62  E-value=0.0015  Score=50.64  Aligned_cols=80  Identities=14%  Similarity=0.138  Sum_probs=52.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCC--c--e--eeCCCCCCCccHHHHHHhhh
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGM--T--D--FINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~--~--~--v~~~~~~~~~~~~~~i~~~~  152 (269)
                      +|+.+||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.    ..+.  .  .  ..|-.+  +++..+.+.+..
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~--~~~v~~~~~~~~   80 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT--DAGQDEILSTTL   80 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCC--HHHHHHHHHHHH
Confidence            6788999986 8999999999999999 9999999988776543    2331  1  1  223332  122222232221


Q ss_pred             C-CCCccEEEEccCC
Q 024295          153 H-GMGVDYCFECTGV  166 (269)
Q Consensus       153 ~-~~~~d~v~d~~g~  166 (269)
                      . -.++|++++++|.
T Consensus        81 ~~~g~iDilvnnAG~   95 (264)
T d1spxa_          81 GKFGKLDILVNNAGA   95 (264)
T ss_dssp             HHHSCCCEEEECCC-
T ss_pred             HHhCCCCEeeccccc
Confidence            1 1279999999863

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.61  E-value=0.0037  Score=48.17  Aligned_cols=102  Identities=18%  Similarity=0.270  Sum_probs=64.0

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEc-CCcchHHH----HHhCCCce-ee--CCCCCCCccHHHHHHhhhC-
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGID-KNPWKKEK----GKAFGMTD-FI--NPDDEPNKSISELVKGITH-  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~-~~~~~~~~----~~~~g~~~-v~--~~~~~~~~~~~~~i~~~~~-  153 (269)
                      .|+++||+|+ +++|.+.++.+...|+ +|+... ++++..+.    +++.|... .+  |..+  +++..+.+.+... 
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~--~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISK--PSEVVALFDKAVSH   81 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCC--HHHHHHHHHHHHHH
Confidence            5899999986 8999999999999999 787764 44444333    34456432 22  2222  2233333332211 


Q ss_pred             CCCccEEEEccCChh-------------------------HHHHHHHHcccCCcEEEEEcc
Q 024295          154 GMGVDYCFECTGVPS-------------------------LLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       154 ~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      -.++|++++++|...                         ..+.++..++.+ |.++.+..
T Consensus        82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~~iii~s  141 (259)
T d1ja9a_          82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSS  141 (259)
T ss_dssp             HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcC-Cccccccc
Confidence            127999999987511                         355667777875 87777754

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.60  E-value=0.0046  Score=47.54  Aligned_cols=76  Identities=18%  Similarity=0.153  Sum_probs=50.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCce---eeCCCCCCCccHHHHHHhhh--CCCC
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTD---FINPDDEPNKSISELVKGIT--HGMG  156 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~--~~~~  156 (269)
                      .+||+|+ +++|.+.+..+...|+ +|+.+++++++.+.+    ++.|...   ..|-.+  +++..+.+.+..  -+ +
T Consensus         3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g-~   78 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD--RDQVFAAVEQARKTLG-G   78 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHTT-C
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC--HHHHHHHHHHHHHHhC-C
Confidence            4588886 8999999888888999 999999998877654    3345332   223332  122222233222  13 7


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      +|++++++|.
T Consensus        79 iDilVnnAG~   88 (255)
T d1gega_          79 FDVIVNNAGV   88 (255)
T ss_dssp             CCEEEECCCC
T ss_pred             ccEEEecccc
Confidence            9999999875

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.58  E-value=0.039  Score=39.61  Aligned_cols=135  Identities=13%  Similarity=0.081  Sum_probs=78.4

Q ss_pred             eEEEEcCChhHHH-HHHHHHHcCCC-eEEEE-cCCcchHHHH-HhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           87 SVAVLGLGTVGLG-AVDGARMHGAA-KIIGI-DKNPWKKEKG-KAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        87 ~vlI~G~g~~G~~-a~~la~~~g~~-~v~~~-~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      ++.|+|+|..|.- -+...+..+-. +++++ ++++++.+.+ ++++...++       .++.+.+.    ...+|+|+-
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~-------~~~~ell~----~~~id~v~I   73 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVF-------DSYEELLE----SGLVDAVDL   73 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEE-------SCHHHHHH----SSCCSEEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccccccee-------eeeecccc----ccccceeec
Confidence            5789999999864 35666654432 56654 6666666554 457765554       33444333    237999999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHh---hh-hCCceE-EeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIA---LA-CGGRTL-KGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~---~~-~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      ++....+...+..++..  |+-|++..|.... .-....   +. .++..+ .+...........+.++.+++.+|++
T Consensus        74 ~tp~~~h~~~~~~al~~--gk~V~~EKPl~~~-~~e~~~l~~~~~~~~~~~~v~~~~R~~~~~~~~~~~~~~i~~G~i  148 (181)
T d1zh8a1          74 TLPVELNLPFIEKALRK--GVHVICEKPISTD-VETGKKVVELSEKSEKTVYIAENFRENSYQKEFEDFYQVVAEGKP  148 (181)
T ss_dssp             CCCGGGHHHHHHHHHHT--TCEEEEESSSSSS-HHHHHHHHHHHHHCSSCEEEECGGGCCHHHHHHHHHHHHHHSCCC
T ss_pred             ccccccccccccccccc--chhhhcCCCCcCC-HHHHHHHHHHHHHhCCeEEEEeeccccccCHHHHHHHHHHHCCCC
Confidence            99877677777777776  6777776554311 111111   22 233333 23221110112457788899999985

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.52  E-value=0.009  Score=41.94  Aligned_cols=85  Identities=14%  Similarity=0.262  Sum_probs=61.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      ++.++|+|.+|.+.+.-....|. ++++.++++++.+.+ +++|....        .+..+.+.      ..|+||-|+-
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~~~~~~l~~~~g~~~~--------~~~~~~~~------~~dvIilavk   66 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALPYA--------MSHQDLID------QVDLVILGIK   66 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCCBC--------SSHHHHHH------TCSEEEECSC
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC-eEEEEcChHHhHHhhccccceeee--------chhhhhhh------ccceeeeecc
Confidence            47889999999988776666677 999999998887776 45675432        22222222      6799999985


Q ss_pred             ChhHHHHHHHHcccCCcEEEEEc
Q 024295          166 VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       166 ~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                       |..+.+.++.++++ ..++.+.
T Consensus        67 -p~~~~~vl~~l~~~-~~iis~~   87 (152)
T d2ahra2          67 -PQLFETVLKPLHFK-QPIISMA   87 (152)
T ss_dssp             -GGGHHHHHTTSCCC-SCEEECC
T ss_pred             -hHhHHHHhhhcccc-eeEeccc
Confidence             45778888888885 7776554

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.51  E-value=0.0052  Score=48.52  Aligned_cols=104  Identities=22%  Similarity=0.237  Sum_probs=64.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc---------hHHHH----HhCCCceeeCCCCCCCccHHHHHH
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW---------KKEKG----KAFGMTDFINPDDEPNKSISELVK  149 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~---------~~~~~----~~~g~~~v~~~~~~~~~~~~~~i~  149 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+..+++.+         ..+.+    +..+.....+..+  ..+..+.+.
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~v~   82 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDS--VEAGEKLVK   82 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCC--GGGHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccch--HHHHHHHHH
Confidence            5889999986 8999999999999999 9999876532         22221    2234444444433  133333333


Q ss_pred             hhh--CCCCccEEEEccCChh-------------------------HHHHHHHHccc-CCcEEEEEccCC
Q 024295          150 GIT--HGMGVDYCFECTGVPS-------------------------LLSEALETTKV-GKGKVIVIGVGV  191 (269)
Q Consensus       150 ~~~--~~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~-~~G~~v~~g~~~  191 (269)
                      +..  -+ ++|++++++|...                         ..+.++..++. +.|++|.++...
T Consensus        83 ~~~~~~G-~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~  151 (302)
T d1gz6a_          83 TALDTFG-RIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASAS  151 (302)
T ss_dssp             HHHHHTS-CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHH
T ss_pred             HHHHHcC-CCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChh
Confidence            221  23 7999999987511                         23445555532 248999998544

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=96.51  E-value=0.0012  Score=49.83  Aligned_cols=93  Identities=22%  Similarity=0.260  Sum_probs=62.6

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHc---CCCeEEEEcCCcchHHHHHhC----CCc---eeeCCCCCCCccHHHHHHhh
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMH---GAAKIIGIDKNPWKKEKGKAF----GMT---DFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~---g~~~v~~~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~~~i~~~  151 (269)
                      ++++.+||-+|+|+ |..+..+++..   ++ +|+++|.+++..+.+++.    +..   +..+.+      .    .+.
T Consensus        37 ~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~-~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d------~----~~~  104 (225)
T d1im8a_          37 VTADSNVYDLGCSR-GAATLSARRNINQPNV-KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCND------I----RHV  104 (225)
T ss_dssp             CCTTCEEEEESCTT-CHHHHHHHHTCCCSSC-EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSC------T----TTC
T ss_pred             cCCCCEEEEeccch-hhHHHHHHHhhcCCCC-ceEEeCCCHHHHHHHHHHhHhhcccchhhhccch------h----hcc
Confidence            67899999999986 88888888753   56 999999999988888652    221   122211      1    111


Q ss_pred             hCCCCccEEEEccCC--------hhHHHHHHHHcccCCcEEEEEc
Q 024295          152 THGMGVDYCFECTGV--------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~--------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                       +...+|+++-....        ...++.+.+.|+|| |.++...
T Consensus       105 -~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~li~~~  147 (225)
T d1im8a_         105 -EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPN-GVLVLSE  147 (225)
T ss_dssp             -CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             -ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCC-ceeeccc
Confidence             12256666543211        23588999999996 9998764

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.50  E-value=0.0031  Score=48.09  Aligned_cols=90  Identities=13%  Similarity=0.070  Sum_probs=59.0

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-eeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DFINPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      .++++||-+|+|+ |..+..+++. |. +|+++|.+++..+.+++    .+.. .++..      +    +.++.....|
T Consensus        36 ~~~~~vLDiGCG~-G~~~~~l~~~-g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~------d----~~~~~~~~~f  102 (246)
T d1y8ca_          36 LVFDDYLDLACGT-GNLTENLCPK-FK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQ------D----ISNLNINRKF  102 (246)
T ss_dssp             CCTTEEEEETCTT-STTHHHHGGG-SS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECC------C----GGGCCCSCCE
T ss_pred             CCCCeEEEEeCcC-CHHHHHHHHh-CC-ccEeeccchhhhhhccccccccCccceeecc------c----hhhhcccccc
Confidence            3467899999985 8877777764 77 99999999988877754    2321 22221      1    1222223389


Q ss_pred             cEEEEccC------Ch----hHHHHHHHHcccCCcEEEE
Q 024295          158 DYCFECTG------VP----SLLSEALETTKVGKGKVIV  186 (269)
Q Consensus       158 d~v~d~~g------~~----~~~~~~~~~l~~~~G~~v~  186 (269)
                      |+|+-..+      .+    ..++.+.+.|++| |.++.
T Consensus       103 D~i~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~  140 (246)
T d1y8ca_         103 DLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG-GVFIF  140 (246)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEE-EEEEE
T ss_pred             cccceeeeeeeccCCHHHHHHHHHHHHHhCCCC-eEEEE
Confidence            99884322      11    2467888899996 98774

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.43  E-value=0.024  Score=40.58  Aligned_cols=99  Identities=21%  Similarity=0.225  Sum_probs=62.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC-CCeEEEEc-CCc-chHHHHHhCCCceeeCCCCCCCccHHHHHHhhh---C------C
Q 024295           87 SVAVLGLGTVGLGAVDGARMHG-AAKIIGID-KNP-WKKEKGKAFGMTDFINPDDEPNKSISELVKGIT---H------G  154 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~-~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~---~------~  154 (269)
                      +|.|.|.|.+|...+..+.... . .++++. .++ +....+.+++.+......    ... ....+..   .      -
T Consensus         4 rIaINGfGRIGR~v~Ral~~~~di-eiVaINd~~~~~~~~~l~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~   77 (172)
T d2czca2           4 KVGVNGYGTIGKRVAYAVTKQDDM-ELIGITKTKPDFEAYRAKELGIPVYAASE----EFI-PRFEKEGFEVAGTLNDLL   77 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTE-EEEEEEESSCSHHHHHHHHTTCCEEESSG----GGH-HHHHHHTCCCSCBHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCc-eEEEEecCCChHHHHHhhhcCceeecccc----cce-eeecccCccccchhhhhh
Confidence            6889999999998888776543 4 566553 333 344556666644332211    111 1111100   0      0


Q ss_pred             CCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC
Q 024295          155 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       155 ~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                      .++|+|+||+|.-...+.+-.++..| -+.|..+.+..
T Consensus        78 ~~vDvViEcTG~f~~~~~~~~hl~~G-~k~Vi~s~~~~  114 (172)
T d2czca2          78 EKVDIIVDATPGGIGAKNKPLYEKAG-VKAIFQGGEKA  114 (172)
T ss_dssp             TTCSEEEECCSTTHHHHHHHHHHHHT-CEEEECTTSCG
T ss_pred             ccCCEEEECCCCCCCHHHHHHHHHcC-CCEEEECCCCc
Confidence            27999999999776777788888996 88888886543

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.42  E-value=0.0053  Score=47.29  Aligned_cols=105  Identities=24%  Similarity=0.329  Sum_probs=64.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCc-chHHHHH-----hCCCcee---eCCCCCCCccHHHHHHhhhC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNP-WKKEKGK-----AFGMTDF---INPDDEPNKSISELVKGITH  153 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~-~~~~~~~-----~~g~~~v---~~~~~~~~~~~~~~i~~~~~  153 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++ ++.+.+.     ..|....   .|-.+  +++..+.+.+...
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~   79 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK--GEAVRGLVDNAVR   79 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS--HHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHH
Confidence            6889999986 8999999999999999 999999864 4443332     2343322   22222  1223332322211


Q ss_pred             --CCCccEEEEccCChh-------------------------HHHHHHHHccc-CCcEEEEEccCCC
Q 024295          154 --GMGVDYCFECTGVPS-------------------------LLSEALETTKV-GKGKVIVIGVGVD  192 (269)
Q Consensus       154 --~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~-~~G~~v~~g~~~~  192 (269)
                        + ++|++++++|...                         ..+.++..++. +.|+++.++...+
T Consensus        80 ~~G-~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~  145 (260)
T d1x1ta1          80 QMG-RIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHG  145 (260)
T ss_dssp             HHS-CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             HhC-CCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccc
Confidence              3 7999999987511                         23344555543 2389999876543

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.36  E-value=0.0056  Score=47.95  Aligned_cols=97  Identities=16%  Similarity=0.169  Sum_probs=67.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC---------C-ceeeCCCCCCCccHHHHHHhhh
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG---------M-TDFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g---------~-~~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      ..-++|||+|.|. |.++-.+++..+.++|.+++.+++-.+.++++-         . -.++.      .+-.+.+++..
T Consensus        79 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~------~Da~~~l~~~~  151 (290)
T d1xj5a_          79 PNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI------GDGVAFLKNAA  151 (290)
T ss_dssp             SCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE------SCHHHHHHTSC
T ss_pred             CCCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEE------ccHHHHHhhcc
Confidence            3457999999766 677778888878779999999998888887742         1 11221      34445555544


Q ss_pred             CCCCccEEE-EccCC---------hhHHHHHHHHcccCCcEEEEEc
Q 024295          153 HGMGVDYCF-ECTGV---------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       153 ~~~~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ++ .+|+|+ |....         ...++.+-+.|+++ |.++.-.
T Consensus       152 ~~-~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~  195 (290)
T d1xj5a_         152 EG-SYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQA  195 (290)
T ss_dssp             TT-CEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             cc-CccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCC-cEEEEec
Confidence            33 899776 55431         22478888999996 9988764

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0071  Score=45.30  Aligned_cols=105  Identities=17%  Similarity=0.155  Sum_probs=69.1

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhh-
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGI-  151 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~-  151 (269)
                      ...+....++||-+|++. |..++.+|+.+.. .+|+.++.+++..+.+++    .|....+....   .+..+.+.+. 
T Consensus        53 ~L~~~~~~k~vLEiGt~~-GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~---Gda~e~l~~~~  128 (219)
T d2avda1          53 NLARLIQAKKALDLGTFT-GYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL---KPALETLDELL  128 (219)
T ss_dssp             HHHHHTTCCEEEEECCTT-SHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHHHH
T ss_pred             HHHHccCCCeEEEEechh-hHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEE---eehhhcchhhh
Confidence            345556778999999875 8999999997642 399999999988777755    45332222222   4444444332 


Q ss_pred             --hCCCCccEEEEccCC---hhHHHHHHHHcccCCcEEEEE
Q 024295          152 --THGMGVDYCFECTGV---PSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       152 --~~~~~~d~v~d~~g~---~~~~~~~~~~l~~~~G~~v~~  187 (269)
                        .....||.||--...   ...++.+++.+++| |.++.=
T Consensus       129 ~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~G-Gvii~D  168 (219)
T d2avda1         129 AAGEAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVL  168 (219)
T ss_dssp             HTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             hhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCC-cEEEEe
Confidence              223379999743332   23478999999996 777653

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.33  E-value=0.085  Score=36.48  Aligned_cols=88  Identities=14%  Similarity=0.082  Sum_probs=58.1

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCC-CccEEEEc
Q 024295           86 SSVAVLG-LGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGM-GVDYCFEC  163 (269)
Q Consensus        86 ~~vlI~G-~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~-~~d~v~d~  163 (269)
                      ++|.|+| .|.+|...+..++..|+ .|.+.+++++........+++.++....  .....+.+.+..+.. .=.+++|+
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~v~~~~~~~~~~~~iiiD~   86 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWAVAESILANADVVIVSVP--INLTLETIERLKPYLTENMLLADL   86 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGGGHHHHHTTCSEEEECSC--GGGHHHHHHHHGGGCCTTSEEEEC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccccccccchhhhhccccccccc--hhhheeeeecccccccCCceEEEe
Confidence            6899999 79999999999999999 9999999877666655566666655443  233444444443321 22377787


Q ss_pred             cCChhHHHHHHHH
Q 024295          164 TGVPSLLSEALET  176 (269)
Q Consensus       164 ~g~~~~~~~~~~~  176 (269)
                      .+........+..
T Consensus        87 ~Svk~~~~~~~~~   99 (152)
T d2pv7a2          87 TSVKREPLAKMLE   99 (152)
T ss_dssp             CSCCHHHHHHHHH
T ss_pred             cccCHHHHHHHHH
Confidence            7654333333333

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.33  E-value=0.0066  Score=46.96  Aligned_cols=81  Identities=11%  Similarity=0.131  Sum_probs=51.2

Q ss_pred             CCCCeEEEEcC-C--hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh---CC-Cce--eeCCCCCCCccHHHHHHhhhC
Q 024295           83 EKGSSVAVLGL-G--TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA---FG-MTD--FINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        83 ~~~~~vlI~G~-g--~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~---~g-~~~--v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      -+|+++||+|+ |  ++|.+.++.+...|+ +|+.++++++..+.+++   .+ ...  ..+..+  +.+..+.+.+...
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~   79 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSK--EEHFKSLYNSVKK   79 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccc--hhhHHHHHHHHHH
Confidence            36899999985 5  699999999999999 99999998754444433   22 212  222222  1233333322221


Q ss_pred             -CCCccEEEEccCC
Q 024295          154 -GMGVDYCFECTGV  166 (269)
Q Consensus       154 -~~~~d~v~d~~g~  166 (269)
                       -..+|+++.+.|.
T Consensus        80 ~~g~id~lV~nag~   93 (274)
T d2pd4a1          80 DLGSLDFIVHSVAF   93 (274)
T ss_dssp             HTSCEEEEEECCCC
T ss_pred             HcCCCCeEEeeccc
Confidence             1279999988864

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.32  E-value=0.0073  Score=46.52  Aligned_cols=97  Identities=19%  Similarity=0.156  Sum_probs=63.5

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccHHHHHHhhh
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      ..+++|++||-+|+|. |..++.+|+. |..+|++++.+++..+.+++    .+.+   .+++.+.          ++..
T Consensus       103 ~~~~~g~~VlD~~aG~-G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~----------~~~~  170 (260)
T d2frna1         103 KVAKPDELVVDMFAGI-GHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN----------RDFP  170 (260)
T ss_dssp             HHCCTTCEEEETTCTT-TTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT----------TTCC
T ss_pred             hhcCCccEEEECcceE-cHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcch----------HHhc
Confidence            3468999999998764 6666677775 44499999999988887764    3432   3443321          1222


Q ss_pred             CCCCccEEE-Ecc-CChhHHHHHHHHcccCCcEEEEEcc
Q 024295          153 HGMGVDYCF-ECT-GVPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       153 ~~~~~d~v~-d~~-g~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      +...+|.|+ +.. .....+..+++.+++| |.+..+..
T Consensus       171 ~~~~~D~Ii~~~p~~~~~~l~~a~~~l~~g-G~lh~~~~  208 (260)
T d2frna1         171 GENIADRILMGYVVRTHEFIPKALSIAKDG-AIIHYHNT  208 (260)
T ss_dssp             CCSCEEEEEECCCSSGGGGHHHHHHHEEEE-EEEEEEEE
T ss_pred             cCCCCCEEEECCCCchHHHHHHHHhhcCCC-CEEEEEec
Confidence            334789665 433 3344678899999996 98866543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.31  E-value=0.0069  Score=44.46  Aligned_cols=93  Identities=22%  Similarity=0.314  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCcee-eCCCCCCCccHHHHHHhhhCCCCcc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDF-INPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      +..+||-+|+| .|..+..+++ .|+ +|++++.+++..+.+++    .+.+.+ +...+         +.++.....||
T Consensus        30 ~~grvLDiGcG-~G~~~~~la~-~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d---------~~~~~~~~~fD   97 (198)
T d2i6ga1          30 APGRTLDLGCG-NGRNSLYLAA-NGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVD---------LNTLTFDGEYD   97 (198)
T ss_dssp             CSCEEEEETCT-TSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECC---------TTTCCCCCCEE
T ss_pred             CCCcEEEECCC-CCHHHHHHHH-Hhh-hhccccCcHHHHHHHHHHhhhccccchhhhhee---------ccccccccccc
Confidence            34489999998 4888888876 488 99999999987776654    343321 11111         01111223799


Q ss_pred             EEEEcc-----CC---hhHHHHHHHHcccCCcEEEEEcc
Q 024295          159 YCFECT-----GV---PSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       159 ~v~d~~-----g~---~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      +|+...     ..   ...+..+.+.++++ |.++....
T Consensus        98 ~I~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~  135 (198)
T d2i6ga1          98 FILSTVVMMFLEAQTIPGLIANMQRCTKPG-GYNLIVAA  135 (198)
T ss_dssp             EEEEESCGGGSCTTHHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred             EEEEeeeeecCCHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            987532     11   23577788889996 98887643

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.27  E-value=0.017  Score=41.05  Aligned_cols=131  Identities=14%  Similarity=0.121  Sum_probs=76.2

Q ss_pred             eEEEEcCChhHHH-HHHHHHHc-CCCeEEEEcCCcchHHHH-HhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           87 SVAVLGLGTVGLG-AVDGARMH-GAAKIIGIDKNPWKKEKG-KAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        87 ~vlI~G~g~~G~~-a~~la~~~-g~~~v~~~~~~~~~~~~~-~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      +|.|+|+|.+|.. .....+.. +. .+++.++++++.+.+ ++++...+++.-       .+.+    +. .+|+|+-|
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~ll----~~-~iD~V~I~   69 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGTLATRYRVSATCTDY-------RDVL----QY-GVDAVMIH   69 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHHHHHHTTCCCCCSST-------TGGG----GG-CCSEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHhcccccccccH-------HHhc----cc-ccceeccc
Confidence            5789999998864 45555544 44 677778887776665 447755444322       1111    22 68999999


Q ss_pred             cCChhHHHHHHHHcccCCcEEEEEccCCCccccchhHh---hh-hCCceEEeeeccCCCCCCcHHHHHHHHHCCCCC
Q 024295          164 TGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIA---LA-CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEFK  236 (269)
Q Consensus       164 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~  236 (269)
                      +....+.+.+..++..  |+-|++..+.... .-....   .. .++..+.-. +.++  ...+.++.+.+..|++.
T Consensus        70 tp~~~H~~~~~~al~~--gk~V~~EKP~~~~-~~e~~~l~~~a~~~~~~~~vg-~~r~--~~~~~~~~~~~~~G~ig  140 (167)
T d1xeaa1          70 AATDVHSTLAAFFLHL--GIPTFVDKPLAAS-AQECENLYELAEKHHQPLYVG-FNGF--DAMVQDWLQVAAAGKLP  140 (167)
T ss_dssp             SCGGGHHHHHHHHHHT--TCCEEEESCSCSS-HHHHHHHHHHHHHTTCCEEEE-CGTH--HHHHHHHHHHHHHTCCC
T ss_pred             cccccccccccccccc--ccccccCCCCcCC-HHHHHHHHHHHHHcCCEEEEE-eCcC--CHHHHHHHHHhhcCCCC
Confidence            9887788888888887  4556776554311 111112   21 234333211 1111  13466777777888753

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.26  E-value=0.0083  Score=44.82  Aligned_cols=72  Identities=21%  Similarity=0.190  Sum_probs=45.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhCCCceee-CCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAA-KIIGIDKNPWKKEKGKAFGMTDFI-NPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~-~v~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      .+|||+|+ |.+|...+..+...|.+ .|+.+.|++++.+.+.. +...+. |..+   ..   .+.+...  ++|.|+.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~~~~~d~~~---~~---~~~~~~~--~~d~vi~   74 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EADVFIGDITD---AD---SINPAFQ--GIDALVI   74 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTTEEECCTTS---HH---HHHHHHT--TCSEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcEEEEeeecc---cc---ccccccc--cceeeEE
Confidence            68999986 99999999999888863 57777787766554432 223222 2222   22   2222222  6899998


Q ss_pred             ccCC
Q 024295          163 CTGV  166 (269)
Q Consensus       163 ~~g~  166 (269)
                      +++.
T Consensus        75 ~a~~   78 (252)
T d2q46a1          75 LTSA   78 (252)
T ss_dssp             CCCC
T ss_pred             EEee
Confidence            8753

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0026  Score=45.26  Aligned_cols=90  Identities=17%  Similarity=0.153  Sum_probs=55.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc--eeeCCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT--DFINPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      +|+|+|+|.+|.+....+...|. .|..+++++++.+..+..+.+  .......   .+..+.+      ..+|++|-++
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------~~~D~iii~v   71 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLVETDGSIFNESLT---ANDPDFL------ATSDLLLVTL   71 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEECTTSCEEEEEEE---ESCHHHH------HTCSEEEECS
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhccccCCccccccccc---cchhhhh------cccceEEEee
Confidence            58999999999998888877899 999999988766544433321  1100000   1111222      1789999999


Q ss_pred             CChhHHHHHHH----HcccCCcEEEEEc
Q 024295          165 GVPSLLSEALE----TTKVGKGKVIVIG  188 (269)
Q Consensus       165 g~~~~~~~~~~----~l~~~~G~~v~~g  188 (269)
                      ... .....++    .+.++ ..++.+.
T Consensus        72 ka~-~~~~~~~~l~~~~~~~-~~Iv~~q   97 (167)
T d1ks9a2          72 KAW-QVSDAVKSLASTLPVT-TPILLIH   97 (167)
T ss_dssp             CGG-GHHHHHHHHHTTSCTT-SCEEEEC
T ss_pred             ccc-chHHHHHhhccccCcc-cEEeecc
Confidence            765 3344443    44453 5666653

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.01  Score=45.90  Aligned_cols=93  Identities=18%  Similarity=0.160  Sum_probs=65.1

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCC--CceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFG--MTDFINPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g--~~~v~~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      ..++.+||-+|+|. |..+..+++.. +. +++++|.+++..+.+++..  ...+.....    ++     .. ....||
T Consensus        82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~d~~----~l-----~~-~~~sfD  149 (268)
T d1p91a_          82 DDKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASSH----RL-----PF-SDTSMD  149 (268)
T ss_dssp             CTTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCTT----SC-----SB-CTTCEE
T ss_pred             CCCCCEEEEeCCCC-cHHHHHHHHHCCCC-EEEEecchHhhhhhhhcccccccceeeehh----hc-----cC-CCCCEE
Confidence            35678999999986 87788888876 45 9999999999888887643  222221111    11     11 223799


Q ss_pred             EEEEccCChhHHHHHHHHcccCCcEEEEEc
Q 024295          159 YCFECTGVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       159 ~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +|+.... +..+.++.+.|+|| |.++...
T Consensus       150 ~v~~~~~-~~~~~e~~rvLkpg-G~l~~~~  177 (268)
T d1p91a_         150 AIIRIYA-PCKAEELARVVKPG-GWVITAT  177 (268)
T ss_dssp             EEEEESC-CCCHHHHHHHEEEE-EEEEEEE
T ss_pred             EEeecCC-HHHHHHHHHHhCCC-cEEEEEe
Confidence            9986543 44789999999996 9988764

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.013  Score=44.73  Aligned_cols=83  Identities=17%  Similarity=0.192  Sum_probs=51.6

Q ss_pred             CCCCeEEEEcC-C--hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhhh-CC
Q 024295           83 EKGSSVAVLGL-G--TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGIT-HG  154 (269)
Q Consensus        83 ~~~~~vlI~G~-g--~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~~-~~  154 (269)
                      -+|+++||+|+ |  ++|.+.+..+...|+ +|+.++++++..+.+++    .+....+.....+..+..+...+.. ..
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW   81 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcc
Confidence            47899999986 5  688888888889999 89999998766655533    3433322222101122333333322 22


Q ss_pred             CCccEEEEccCC
Q 024295          155 MGVDYCFECTGV  166 (269)
Q Consensus       155 ~~~d~v~d~~g~  166 (269)
                      ...|+.+++++.
T Consensus        82 ~~~d~~v~~a~~   93 (258)
T d1qsga_          82 PKFDGFVHSIGF   93 (258)
T ss_dssp             SSEEEEEECCCC
T ss_pred             cccceEEEeecc
Confidence            378899887644

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0018  Score=51.44  Aligned_cols=44  Identities=25%  Similarity=0.449  Sum_probs=33.3

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcch
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK  121 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~  121 (269)
                      +.+...+.++++||.+|+| .|..++.+|+ .|+++|++++.++.-
T Consensus        27 i~~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~   70 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEIL   70 (311)
T ss_dssp             HHHCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHH
T ss_pred             HHhccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHH
Confidence            3344466789999999998 4777777666 487799999988743

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=96.21  E-value=0.056  Score=37.51  Aligned_cols=96  Identities=20%  Similarity=0.274  Sum_probs=58.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHc--CCCeEEEEcCCc--chH-HHHHhCCCceeeCCCCCCCccHHHHHH----------
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMH--GAAKIIGIDKNP--WKK-EKGKAFGMTDFINPDDEPNKSISELVK----------  149 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~--g~~~v~~~~~~~--~~~-~~~~~~g~~~v~~~~~~~~~~~~~~i~----------  149 (269)
                      ++|.|+|+ |.+|..+.++.+..  .+ +|+++.-..  +++ +.++++.+..++-.++   . ..+.+.          
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~---~-~~~~l~~~~~~~~~~v   77 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRY-QVIALTANRNVKDLADAAKRTNAKRAVIADP---S-LYNDLKEALAGSSVEA   77 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGE-EEEEEEESSCHHHHHHHHHHTTCSEEEESCG---G-GHHHHHHHTTTCSSEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCc-EEEEEEeCCCHHHHHHHHHhhccccceeccH---H-HHHHHHHHhhhccccc
Confidence            68999997 99999999999976  46 777775443  222 2346687776654432   1 112222          


Q ss_pred             --------hhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEcc
Q 024295          150 --------GITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       150 --------~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                              +... ..+|+++.++.+-..+.-.+..++.  |+-+.+..
T Consensus        78 ~~g~~~l~~~~~-~~~D~vv~Ai~G~~GL~~tl~ai~~--gk~iaLAN  122 (150)
T d1r0ka2          78 AAGADALVEAAM-MGADWTMAAIIGCAGLKATLAAIRK--GKTVALAN  122 (150)
T ss_dssp             EESHHHHHHHHT-SCCSEEEECCCSGGGHHHHHHHHHT--TSEEEECC
T ss_pred             ccCccchheecc-cccceeeeecCchhHHHHHHHHHhc--CCEEEEec
Confidence                    2222 2577788777655566777777777  34444443

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.21  E-value=0.022  Score=41.55  Aligned_cols=98  Identities=17%  Similarity=0.202  Sum_probs=62.9

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc----eeeCCCCCCCccHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT----DFINPDDEPNKSISEL  147 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~----~v~~~~~~~~~~~~~~  147 (269)
                      |.+.....++++||-+|+|. |..++.+++ .+. +|++++.++...+.+++    .+..    .++..+      +.  
T Consensus        44 Li~~l~~~~~~~VLDiGcG~-G~~~~~la~-~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d------~~--  112 (194)
T d1dusa_          44 LVENVVVDKDDDILDLGCGY-GVIGIALAD-EVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSD------LY--  112 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTT-SHHHHHHGG-GSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECS------TT--
T ss_pred             HHHhCCcCCCCeEEEEeecC-ChhHHHHHh-hcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcc------hh--
Confidence            45667788999999999876 777777765 355 99999999887777754    2321    122211      11  


Q ss_pred             HHhhhCCCCccEEEEcc----CC---hhHHHHHHHHcccCCcEEEEE
Q 024295          148 VKGITHGMGVDYCFECT----GV---PSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       148 i~~~~~~~~~d~v~d~~----g~---~~~~~~~~~~l~~~~G~~v~~  187 (269)
                       ... .+..||+|+-..    +.   ...++.+.+.|+++ |+++..
T Consensus       113 -~~~-~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~  156 (194)
T d1dusa_         113 -ENV-KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN-GEIWVV  156 (194)
T ss_dssp             -TTC-TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             -hhh-ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcC-cEEEEE
Confidence             111 223899988522    21   12367788899996 987654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.19  E-value=0.0056  Score=41.00  Aligned_cols=67  Identities=7%  Similarity=0.180  Sum_probs=47.1

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      .++..++|+|+|+|.+|.-+++.++.+|. +|+.+.+.+.            ++..-+   ++..+.+.+.....++++.
T Consensus        18 ~l~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~~------------il~~~d---~~~~~~~~~~l~~~gV~i~   81 (117)
T d1onfa2          18 NIKESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGNR------------ILRKFD---ESVINVLENDMKKNNINIV   81 (117)
T ss_dssp             TCCCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSS------------SCTTSC---HHHHHHHHHHHHHTTCEEE
T ss_pred             ccCCCCEEEEECCchHHHHHHHHHHhccc-cceeeehhcc------------cccccc---HHHHHHHHHHHHhCCCEEE
Confidence            44556899999999999999999999999 9999987531            111111   5566666654444477777


Q ss_pred             EEc
Q 024295          161 FEC  163 (269)
Q Consensus       161 ~d~  163 (269)
                      +++
T Consensus        82 ~~~   84 (117)
T d1onfa2          82 TFA   84 (117)
T ss_dssp             CSC
T ss_pred             ECC
Confidence            654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.16  E-value=0.036  Score=39.68  Aligned_cols=44  Identities=18%  Similarity=0.246  Sum_probs=37.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM  130 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~  130 (269)
                      .+|-++|.|.+|...+.-+...|+ +|++.++++++.+.+.+.++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~   46 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEA   46 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTT
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhcc
Confidence            568899999999998888878899 99999999999988866543

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.16  E-value=0.018  Score=43.70  Aligned_cols=162  Identities=16%  Similarity=0.111  Sum_probs=87.1

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEc-CCcchHHHH----HhCCCce---eeCCCCCCCccHHHHHHhhhC-CCC
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGID-KNPWKKEKG----KAFGMTD---FINPDDEPNKSISELVKGITH-GMG  156 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~-~~~~~~~~~----~~~g~~~---v~~~~~~~~~~~~~~i~~~~~-~~~  156 (269)
                      .+||+|+ +++|++.++.+...|+ +|+..+ +++++.+.+    ++.|...   ..|-.+  +++..+.+.+... -.+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK--EADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS--HHHHHHHHHHHHHHSSC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHHHHHHcCC
Confidence            5678886 8999999999999999 887764 455555443    3345322   223332  1223333332221 127


Q ss_pred             ccEEEEccCChh-------------------------HHHHHHHHc--ccCCcEEEEEccCCC-cc-ccchh--------
Q 024295          157 VDYCFECTGVPS-------------------------LLSEALETT--KVGKGKVIVIGVGVD-AM-VPLNV--------  199 (269)
Q Consensus       157 ~d~v~d~~g~~~-------------------------~~~~~~~~l--~~~~G~~v~~g~~~~-~~-~~~~~--------  199 (269)
                      +|++++++|...                         ..+.++..+  +. +|++|.++...+ .+ .....        
T Consensus        80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnisS~~~~~~~~~~~~Y~asKaal  158 (244)
T d1edoa_          80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR-KGRIINIASVVGLIGNIGQANYAAAKAGV  158 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHHHHCCTTCHHHHHHHHHH
T ss_pred             CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcC-CcEEEEEcChhhcCCCCCCHHHHHHHHHH
Confidence            999999987511                         234455554  34 499999986543 11 11111        


Q ss_pred             --------HhhhhCCceEEeeeccCCCCC---CcHHHHHHHHHCCCCCCCcceeEEeehhhHHHHHHHh
Q 024295          200 --------IALACGGRTLKGTTFGGIKTK---SDLPTLLDKCKNKEFKLHQLLTHHVKLEEIDKAIQLL  257 (269)
Q Consensus       200 --------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~a~~~~  257 (269)
                              ..+-.+++++.....+...+.   +..++..+.+.+. +..    .+...-+++-++..+|
T Consensus       159 ~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~-~pl----~R~~~p~dvA~~v~fL  222 (244)
T d1edoa_         159 IGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGT-IPL----GRTGQPENVAGLVEFL  222 (244)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTS-CTT----CSCBCHHHHHHHHHHH
T ss_pred             HHChHHHHHHHhhhCcEEEEEecceeccHHHHHhhHHHHHHHHhc-CCC----CCCcCHHHHHHHHHHH
Confidence                    112245777777666554321   1122333333332 112    2233457888888876

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.15  E-value=0.0073  Score=46.08  Aligned_cols=78  Identities=19%  Similarity=0.302  Sum_probs=49.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHH---HcCCCeEEEEcCCcchHHHHHhC----CCce--eeCCCCCCCccHHHHHH---hhh
Q 024295           86 SSVAVLGL-GTVGLGAVDGAR---MHGAAKIIGIDKNPWKKEKGKAF----GMTD--FINPDDEPNKSISELVK---GIT  152 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~---~~g~~~v~~~~~~~~~~~~~~~~----g~~~--v~~~~~~~~~~~~~~i~---~~~  152 (269)
                      ++|||+|+ +++|++.++.+.   ..|+ +|+.++|++++.+.++++    +.-.  ..|-.+  ++...+.+.   +..
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~i~~~~   79 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN--FDAYDKLVADIEGVT   79 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC--GGGHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHhcCCcEEEEEEEecc--HHHHHHHHhhhHHHh
Confidence            57999986 899998776554   3577 999999999887665432    2212  223332  233333333   233


Q ss_pred             CCCCccEEEEccCC
Q 024295          153 HGMGVDYCFECTGV  166 (269)
Q Consensus       153 ~~~~~d~v~d~~g~  166 (269)
                      ...++|+++++.|.
T Consensus        80 ~~~~iDiLvnNAg~   93 (248)
T d1snya_          80 KDQGLNVLFNNAGI   93 (248)
T ss_dssp             GGGCCSEEEECCCC
T ss_pred             hcCCcceEEeeccc
Confidence            33379999998764

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.14  E-value=0.0071  Score=40.54  Aligned_cols=42  Identities=19%  Similarity=0.161  Sum_probs=35.9

Q ss_pred             HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      .+.....++++|+|+|+|.+|+=.+..++..|. +|..+.+.+
T Consensus        14 ~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~   55 (121)
T d1mo9a2          14 VEELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTE   55 (121)
T ss_dssp             HHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             HHHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccc
Confidence            445567788999999999999999999999998 999998754

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0054  Score=46.82  Aligned_cols=46  Identities=24%  Similarity=0.266  Sum_probs=39.1

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH-HhCCC
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG-KAFGM  130 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~-~~~g~  130 (269)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++.
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~   51 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGN   51 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC
Confidence            7899999986 8999999999999999 999999998877765 44553

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0051  Score=40.78  Aligned_cols=38  Identities=21%  Similarity=0.371  Sum_probs=32.8

Q ss_pred             CCCC-CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcc
Q 024295           82 VEKG-SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW  120 (269)
Q Consensus        82 ~~~~-~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~  120 (269)
                      ++++ .+|.|+|+|.+|.+.++-|+.+|+ ++++.+++++
T Consensus         7 ~~~~~~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~   45 (111)
T d1kjqa2           7 LRPAATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYAD   45 (111)
T ss_dssp             TSTTCCEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTT
T ss_pred             CCCCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCC
Confidence            4444 569999999999999999999999 9999997654

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=96.05  E-value=0.024  Score=39.81  Aligned_cols=107  Identities=23%  Similarity=0.292  Sum_probs=72.9

Q ss_pred             HHHhcC-CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCC
Q 024295           76 AWKEAK-VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        76 l~~~~~-~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      +.+... +-.|++++|.|-|-+|...++-+|.+|+ +|++++.+|-+.-.+.--|.. +.        ...+.+      
T Consensus        13 i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~alqA~mdGf~-v~--------~~~~a~------   76 (163)
T d1v8ba1          13 LMRATDFLISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFN-VV--------TLDEIV------   76 (163)
T ss_dssp             HHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCE-EC--------CHHHHT------
T ss_pred             HHHHhCceecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchhhHHHHhcCCc-cC--------chhHcc------
Confidence            444433 4579999999999999999999999999 999999888443333222322 21        122222      


Q ss_pred             CCccEEEEccCChhH-HHHHHHHcccCCcEEEEEccCCCccccchhHhh
Q 024295          155 MGVDYCFECTGVPSL-LSEALETTKVGKGKVIVIGVGVDAMVPLNVIAL  202 (269)
Q Consensus       155 ~~~d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~  202 (269)
                      ...|+++-++|.... ..+-++.++.+ .-+...|...   .+++...+
T Consensus        77 ~~aDi~vTaTGn~~vI~~~h~~~MKdg-aIl~N~GHfd---~EIdv~~L  121 (163)
T d1v8ba1          77 DKGDFFITCTGNVDVIKLEHLLKMKNN-AVVGNIGHFD---DEIQVNEL  121 (163)
T ss_dssp             TTCSEEEECCSSSSSBCHHHHTTCCTT-CEEEECSSTT---TSBCHHHH
T ss_pred             ccCcEEEEcCCCCccccHHHHHHhhCC-eEEEeccccc---hhhhhHHH
Confidence            167999999998643 46778899995 7777776544   34444333

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.03  E-value=0.0035  Score=45.73  Aligned_cols=35  Identities=20%  Similarity=0.299  Sum_probs=31.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      +++|+|+|+|+.|+.++..++..|.+.|+++++++
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC
Confidence            57899999999999999999999996688888765

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.94  E-value=0.023  Score=41.59  Aligned_cols=89  Identities=21%  Similarity=0.216  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .|++|.|+|.|.+|...+++++..|. +|++.++........  .+..    .     .++.+.++      ..|++.-+
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~~~~~~--~~~~----~-----~~l~~~l~------~sDii~~~  103 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPELEK--KGYY----V-----DSLDDLYK------QADVISLH  103 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHH--TTCB----C-----SCHHHHHH------HCSEEEEC
T ss_pred             cCCeEEEecccccchhHHHhHhhhcc-cccccCccccccccc--ceee----e-----cccccccc------cccccccc
Confidence            47899999999999999999999999 999998764433221  1111    1     33434443      46888876


Q ss_pred             cCC-hh----HHHHHHHHcccCCcEEEEEccCC
Q 024295          164 TGV-PS----LLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       164 ~g~-~~----~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      +.. +.    .-.+.++.++++ ..+|.++...
T Consensus       104 ~plt~~T~~li~~~~l~~mk~~-a~lIN~sRG~  135 (197)
T d1j4aa1         104 VPDVPANVHMINDESIAKMKQD-VVIVNVSRGP  135 (197)
T ss_dssp             SCCCGGGTTCBSHHHHHHSCTT-EEEEECSCGG
T ss_pred             CCccccccccccHHHHhhhCCc-cEEEecCchh
Confidence            642 21    125678888886 8888876543

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0041  Score=38.24  Aligned_cols=35  Identities=20%  Similarity=0.222  Sum_probs=30.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcch
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWK  121 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~  121 (269)
                      ++|.|+|+|.+|++.++-++.+|. ++.+.+.+++.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCCC
Confidence            478999999999999999999999 99999876543

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.87  E-value=0.049  Score=38.78  Aligned_cols=98  Identities=21%  Similarity=0.284  Sum_probs=60.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcC-Cc-chHHHHHhCCCceeeCCCC---------C-CCccHHHHHHhhhCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDK-NP-WKKEKGKAFGMTDFINPDD---------E-PNKSISELVKGITHG  154 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~-~~-~~~~~~~~~g~~~v~~~~~---------~-~~~~~~~~i~~~~~~  154 (269)
                      +|.|.|.|.+|..+.+++...+--.++++.. ++ .....+..++.+......+         . -..++.+.    .  
T Consensus         3 ~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~----~--   76 (171)
T d1cf2o1           3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM----L--   76 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH----H--
T ss_pred             EEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHh----h--
Confidence            6889999999999988876554226666542 22 3344555665443332211         0 00111111    1  


Q ss_pred             CCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          155 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       155 ~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      .++|+|+||+|.-.....+-.++..| -+.+..+.+.
T Consensus        77 ~~vDvViEcTG~f~~~~~~~~hl~~G-~K~vi~~~~~  112 (171)
T d1cf2o1          77 DEADIVIDCTPEGIGAKNLKMYKEKG-IKAIFQGGEK  112 (171)
T ss_dssp             HTCSEEEECCSTTHHHHHHHHHHHTT-CEEEECTTSC
T ss_pred             cCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEECCCC
Confidence            26999999999765667777888886 7887776544

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.87  E-value=0.0017  Score=51.85  Aligned_cols=92  Identities=23%  Similarity=0.247  Sum_probs=54.4

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc---eeeCCCCCCCccHHHHHHhhhC
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT---DFINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~---~v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .+.++++||.+|+|. |.+++.+++ .|+++|++++.++. ...+    +..+..   .++..+.   .++     . .+
T Consensus        30 ~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~---~~~-----~-~~   97 (316)
T d1oria_          30 HLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKV---EEV-----E-LP   97 (316)
T ss_dssp             HHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCT---TTC-----C-CS
T ss_pred             ccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccH---HHc-----c-cc
Confidence            455899999999986 777776666 68779999997753 3333    223321   2322221   111     0 12


Q ss_pred             CCCccEEEEc-cCC--------hhHHHHHHHHcccCCcEEE
Q 024295          154 GMGVDYCFEC-TGV--------PSLLSEALETTKVGKGKVI  185 (269)
Q Consensus       154 ~~~~d~v~d~-~g~--------~~~~~~~~~~l~~~~G~~v  185 (269)
                      ...+|+|+-. .+.        +..+...-+.|+++ |+++
T Consensus        98 ~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~-G~ii  137 (316)
T d1oria_          98 VEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPD-GLIF  137 (316)
T ss_dssp             SSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred             cceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCC-eEEE
Confidence            3479988642 221        22344556799996 8875

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.87  E-value=0.01  Score=39.54  Aligned_cols=64  Identities=17%  Similarity=0.221  Sum_probs=44.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      .++++|+|+|.+|.-+++.+..+|. +|+.+.+.++=            +..-+   ++..+.+.+.....|+++.+++.
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~i------------l~~~d---~~~~~~l~~~l~~~GI~i~~~~~   85 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGEI------------LSGFE---KQMAAIIKKRLKKKGVEVVTNAL   85 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSSS------------STTSC---HHHHHHHHHHHHHTTCEEEESEE
T ss_pred             CCeEEEECCCccceeeeeeeccccc-EEEEEEeccee------------ccccc---chhHHHHHHHHHhcCCEEEcCCE
Confidence            4789999999999999999999999 99999876421            11111   44555555544344777777643

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=95.83  E-value=0.0064  Score=45.63  Aligned_cols=95  Identities=13%  Similarity=0.059  Sum_probs=59.3

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCc--eeeCCCCCCCccHHHHHHhhhCCCC
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMT--DFINPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      ..+..++.+||-+|+|. |..+..+++ .|. +|++++.+++..+.+++...+  .++...      +    .+......
T Consensus        15 ~~~~~~~~~VLDiGcG~-G~~~~~l~~-~g~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~------~----~~~~~~~~   81 (225)
T d2p7ia1          15 FTPFFRPGNLLELGSFK-GDFTSRLQE-HFN-DITCVEASEEAISHAQGRLKDGITYIHSR------F----EDAQLPRR   81 (225)
T ss_dssp             HGGGCCSSCEEEESCTT-SHHHHHHTT-TCS-CEEEEESCHHHHHHHHHHSCSCEEEEESC------G----GGCCCSSC
T ss_pred             hhhhCCCCcEEEEeCCC-cHHHHHHHH-cCC-eEEEEeCcHHHhhhhhccccccccccccc------c----cccccccc
Confidence            34455677899999986 777766654 477 899999999999988764322  222221      1    11122337


Q ss_pred             ccEEEEcc-----CChh-HHHHHH-HHcccCCcEEEEE
Q 024295          157 VDYCFECT-----GVPS-LLSEAL-ETTKVGKGKVIVI  187 (269)
Q Consensus       157 ~d~v~d~~-----g~~~-~~~~~~-~~l~~~~G~~v~~  187 (269)
                      ||+|+-.-     ..+. .+..+. +++++| |.++..
T Consensus        82 fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~g-G~l~i~  118 (225)
T d2p7ia1          82 YDNIVLTHVLEHIDDPVALLKRINDDWLAEG-GRLFLV  118 (225)
T ss_dssp             EEEEEEESCGGGCSSHHHHHHHHHHTTEEEE-EEEEEE
T ss_pred             cccccccceeEecCCHHHHHHHHHHHhcCCC-ceEEEE
Confidence            99886321     2222 345565 578996 887653

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=95.83  E-value=0.018  Score=43.16  Aligned_cols=112  Identities=21%  Similarity=0.216  Sum_probs=69.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh-CCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA-FGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      -.+.+|+|.|.|.+|..+++++...|+ ++++++.++.+.+.+.. .|... ++..     +       +. ....|+.+
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~g~~~-~~~~-----~-------~~-~~~cDIl~  101 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGADA-VAPN-----A-------IY-GVTCDIFA  101 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCEE-CCGG-----G-------TT-TCCCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhcCCcc-cCCc-----c-------cc-cccccEec
Confidence            468999999999999999999999999 99999988877776654 55442 2211     1       11 23788888


Q ss_pred             EccCChhHHHHHHHHcccCCcEEEEEccCCCccccchh-HhhhhCCceEEeee
Q 024295          162 ECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNV-IALACGGRTLKGTT  213 (269)
Q Consensus       162 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~  213 (269)
                      =|..+...-.+....++..    +.++...+.+..... ..+..|++.+.+-.
T Consensus       102 PcA~~~~I~~~~~~~l~ak----~Ive~ANn~~t~~ea~~~L~~rGI~~iPD~  150 (230)
T d1leha1         102 PCALGAVLNDFTIPQLKAK----VIAGSADNQLKDPRHGKYLHELGIVYAPDY  150 (230)
T ss_dssp             ECSCSCCBSTTHHHHCCCS----EECCSCSCCBSSHHHHHHHHHHTCEECCHH
T ss_pred             ccccccccChHHhhccCcc----EEEecccCCCCCchHHHHHHhhCcEEEeeh
Confidence            8775433334444555542    334433221211122 23445677666543

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.0074  Score=40.68  Aligned_cols=63  Identities=16%  Similarity=0.268  Sum_probs=44.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .++++|+|+|.+|+=+++++..+|. +|..+.+.+.            ++..-+   ++..+.+.+.....|+++.+++
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~~------------~l~~~d---~ei~~~l~~~l~~~GV~i~~~~   85 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQPQ------------IGASMD---GEVAKATQKFLKKQGLDFKLST   85 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS------------SSSSSC---HHHHHHHHHHHHHTTCEEECSE
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCc-ceeEEEeccc------------cchhhh---hhhHHHHHHHHHhccceEEeCC
Confidence            3789999999999999999999999 9999987532            111111   5555555554444477777664

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=95.79  E-value=0.031  Score=40.68  Aligned_cols=91  Identities=14%  Similarity=0.204  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .++++.|+|.|.+|...+++++..|. +|+..++...........+...   .     .++.+.+.      ..|+|..+
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~~---~-----~~l~~ll~------~sD~v~l~  110 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASSSDEASYQATF---H-----DSLDSLLS------VSQFFSLN  110 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHHHHTCEE---C-----SSHHHHHH------HCSEEEEC
T ss_pred             cccceEEeecccchHHHHHHHHhhcc-ccccccccccccchhhcccccc---c-----CCHHHHHh------hCCeEEec
Confidence            47999999999999999999999999 9999987655444333322211   1     23433333      45777765


Q ss_pred             cCC-hhH----HHHHHHHcccCCcEEEEEccC
Q 024295          164 TGV-PSL----LSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       164 ~g~-~~~----~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      ... +.+    -...++.++++ ..+|.++..
T Consensus       111 ~plt~~T~~li~~~~l~~mk~~-a~lIN~sRG  141 (191)
T d1gdha1         111 APSTPETRYFFNKATIKSLPQG-AIVVNTARG  141 (191)
T ss_dssp             CCCCTTTTTCBSHHHHTTSCTT-EEEEECSCG
T ss_pred             CCCCchHhheecHHHhhCcCCc-cEEEecCCc
Confidence            532 211    24677788885 888777643

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.74  E-value=0.058  Score=38.67  Aligned_cols=96  Identities=18%  Similarity=0.203  Sum_probs=56.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHc-CCCeEEEEc-CCcc-hHHHHHhCCCceeeCCCC--------C-CCccHHHHHHhhhCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMH-GAAKIIGID-KNPW-KKEKGKAFGMTDFINPDD--------E-PNKSISELVKGITHG  154 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~-~~~~-~~~~~~~~g~~~v~~~~~--------~-~~~~~~~~i~~~~~~  154 (269)
                      +|.|.|.|.+|....+.+... .. .++++. ..+. ....+...+.........        . -..++....      
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~di-evVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~------   75 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDM-KLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI------   75 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTE-EEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH------
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCC-EEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhh------
Confidence            588999999999999988865 35 677764 3333 333334444322211110        0 001111111      


Q ss_pred             CCccEEEEccCChhHHHHHHHHcccCCcEEEEEccC
Q 024295          155 MGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       155 ~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      .++|+|+||+|.-...+.+-.+++.| -+++..+..
T Consensus        76 ~~vDiViecTG~f~~~e~a~~hl~~G-~KvIi~~~~  110 (178)
T d1b7go1          76 KTSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQGGE  110 (178)
T ss_dssp             HHCSEEEECCSTTHHHHHHHHHHHTT-CEEEECTTS
T ss_pred             hcCCEEEECCCCcCCHHHHHHHHHcC-CEEEEECCC
Confidence            16899999999765667777777775 577766543

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.74  E-value=0.088  Score=35.80  Aligned_cols=28  Identities=29%  Similarity=0.354  Sum_probs=20.6

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHc-CCCeEEEE
Q 024295           87 SVAVLGL-GTVGLGAVDGARMH-GAAKIIGI  115 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~-g~~~v~~~  115 (269)
                      +|.|.|+ |-+|...++..... +. .+++.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~-~l~~~   30 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDL-TLSAE   30 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTS-EEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCC-EEEEE
Confidence            5889996 99999988877654 56 44443

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.72  E-value=0.067  Score=39.23  Aligned_cols=98  Identities=13%  Similarity=0.031  Sum_probs=63.3

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      +..||-+|+|. |..++.+|+..--.++++++.++.....+    ++.+.+.+--..    .+... +.+......+|.|
T Consensus        30 ~PlvLeIGcG~-G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~----~Da~~-l~~~~~~~~~d~v  103 (204)
T d2fcaa1          30 NPIHIEVGTGK-GQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLN----IDADT-LTDVFEPGEVKRV  103 (204)
T ss_dssp             CCEEEEECCTT-SHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEEC----CCGGG-HHHHCCTTSCCEE
T ss_pred             CceEEEEEecC-cHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcc----cchhh-hhcccCchhhhcc
Confidence            45678889987 99999999987544999999988766655    345654322111    12211 2233334478877


Q ss_pred             EEccCC--------------hhHHHHHHHHcccCCcEEEEEcc
Q 024295          161 FECTGV--------------PSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       161 ~d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      +-....              +..+..+.+.|+|| |.+....+
T Consensus       104 ~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg-G~l~i~TD  145 (204)
T d2fcaa1         104 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG-GSIHFKTD  145 (204)
T ss_dssp             EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS-CEEEEEES
T ss_pred             ccccccccchhhhcchhhhHHHHHHHHHHhCCCC-cEEEEEEC
Confidence            643322              24678899999997 99877643

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.71  E-value=0.0026  Score=50.97  Aligned_cols=93  Identities=24%  Similarity=0.271  Sum_probs=53.7

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCc---eeeCCCCCCCccHHHHHHhhh
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMT---DFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~---~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      ..+.++++||-+|+|. |.++..+++ .|+++|++++.++ ..+.++    ..+..   .++..+-   .++     . .
T Consensus        34 ~~~~~~~~VLDlGcGt-G~ls~~aa~-~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~---~~l-----~-~  101 (328)
T d1g6q1_          34 KDLFKDKIVLDVGCGT-GILSMFAAK-HGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKL---EDV-----H-L  101 (328)
T ss_dssp             HHHHTTCEEEEETCTT-SHHHHHHHH-TCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT---TTS-----C-C
T ss_pred             cccCCcCEEEEeCCCC-CHHHHHHHH-hCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeeh---hhc-----c-C
Confidence            3456899999999985 777765555 6877999999775 333333    33421   2232221   111     1 1


Q ss_pred             CCCCccEEEEcc-C----C----hhHHHHHHHHcccCCcEEE
Q 024295          153 HGMGVDYCFECT-G----V----PSLLSEALETTKVGKGKVI  185 (269)
Q Consensus       153 ~~~~~d~v~d~~-g----~----~~~~~~~~~~l~~~~G~~v  185 (269)
                      +...+|+|+-.. +    .    +..+...-+.|+|| |.++
T Consensus       102 ~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~Lkpg-G~ii  142 (328)
T d1g6q1_         102 PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEG-GLIF  142 (328)
T ss_dssp             SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred             cccceeEEEEEecceeeccchhHHHHHHHHHhccCCC-eEEE
Confidence            234899886522 1    1    11244445789996 8874

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=95.71  E-value=0.029  Score=40.70  Aligned_cols=91  Identities=15%  Similarity=0.201  Sum_probs=61.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+.++.|+|.|.+|...+++++..|. +|+..++........+..+....        .++.+.+.      ..|+|.-+
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~~~--------~~l~~~l~------~sD~v~~~  107 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH--------ATREDMYP------VCDVVTLN  107 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC--------SSHHHHGG------GCSEEEEC
T ss_pred             cccceeeccccccchhhhhhhhccCc-eEEEEeecccccccccccccccc--------CCHHHHHH------hccchhhc
Confidence            57899999999999999999999999 99999987655555555443211        22222221      46777665


Q ss_pred             cCC-hh----HHHHHHHHcccCCcEEEEEccC
Q 024295          164 TGV-PS----LLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       164 ~g~-~~----~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      ... +.    .-.+.+..++++ ..+|.++..
T Consensus       108 ~plt~~T~~li~~~~l~~mk~g-a~lIN~aRG  138 (188)
T d2naca1         108 CPLHPETEHMINDETLKLFKRG-AYIVNTARG  138 (188)
T ss_dssp             SCCCTTTTTCBSHHHHTTSCTT-EEEEECSCG
T ss_pred             ccccccchhhhHHHHHHhCCCC-CEEEecCch
Confidence            532 11    134677788885 777777643

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.0086  Score=43.29  Aligned_cols=37  Identities=24%  Similarity=0.368  Sum_probs=33.0

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      ....++|+|+|+|+.|+.|+..+...|. +|+.+++.+
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~   76 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS   76 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC
Confidence            3456899999999999999999999999 999998764

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=95.68  E-value=0.02  Score=44.48  Aligned_cols=97  Identities=20%  Similarity=0.268  Sum_probs=64.8

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCce-eeCCCCCCCccHHHHHHhhhC
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTD-FINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~-v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .++.+..+||-+|+|. |..+..+++..+. .+|+++|.+++..+.+++    .+... ....+-   .++     . .+
T Consensus        23 ~~~~~~~~ILDiGcG~-G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~---~~~-----~-~~   92 (281)
T d2gh1a1          23 WKITKPVHIVDYGCGY-GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDA---TEI-----E-LN   92 (281)
T ss_dssp             SCCCSCCEEEEETCTT-THHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCT---TTC-----C-CS
T ss_pred             hccCCcCEEEEecCcC-CHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccc---ccc-----c-cc
Confidence            3567788999999986 8888888887642 289999999988877765    23221 111110   110     1 12


Q ss_pred             CCCccEEEEcc-----CC-hhHHHHHHHHcccCCcEEEEEc
Q 024295          154 GMGVDYCFECT-----GV-PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       154 ~~~~d~v~d~~-----g~-~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      + .||+|+-.-     .. ...++.+.+.+++| |.++...
T Consensus        93 ~-~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~lii~~  131 (281)
T d2gh1a1          93 D-KYDIAICHAFLLHMTTPETMLQKMIHSVKKG-GKIICFE  131 (281)
T ss_dssp             S-CEEEEEEESCGGGCSSHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             C-CceEEEEehhhhcCCCHHHHHHHHHHHcCcC-cEEEEEE
Confidence            3 799997532     22 23578899999996 9988764

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.095  Score=36.33  Aligned_cols=98  Identities=16%  Similarity=0.218  Sum_probs=60.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcC--CCeEEEEcCCc--chHH-HHHhCCCceeeCCCCCCCccH---H-----------
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHG--AAKIIGIDKNP--WKKE-KGKAFGMTDFINPDDEPNKSI---S-----------  145 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g--~~~v~~~~~~~--~~~~-~~~~~g~~~v~~~~~~~~~~~---~-----------  145 (269)
                      ++|.|+|+ |++|..+..+.+...  + +|++..-+.  +.+. .++++.+..++-.++   ...   .           
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~---~~~~~l~~~l~~~~~~~~   77 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHF-RVVALVAGKNVTRMVEQCLEFSPRYAVMDDE---ASAKLLKTMLQQQGSRTE   77 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTE-EEEEEEESSCHHHHHHHHHHHCCSEEEESSH---HHHHHHHHHHHHTTCCCE
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCc-EEEEEEecCcHHHHHHHHHHHhhcccccccH---HHHHHHHHHhhhhccccc
Confidence            36889996 999999999999873  5 676665332  3322 245677776655442   111   1           


Q ss_pred             -----HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEcc
Q 024295          146 -----ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       146 -----~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                           +.+.+.....++|+|+.++.+-..+.-.+..++.  |+-+.+..
T Consensus        78 ~~~g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~--gk~iaLAN  124 (151)
T d1q0qa2          78 VLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRA--GKTILLAN  124 (151)
T ss_dssp             EEESHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHT--TCEEEECC
T ss_pred             cccChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhc--CCeEEEEc
Confidence                 1222223334688888888666677777777777  44455543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.0076  Score=40.21  Aligned_cols=34  Identities=26%  Similarity=0.199  Sum_probs=30.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      .++++|+|+|.+|+-+++.++.+|. +|..+.+.+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhcccc-EEEEEeecc
Confidence            3689999999999999999999999 999998764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.58  E-value=0.05  Score=34.69  Aligned_cols=71  Identities=15%  Similarity=0.275  Sum_probs=50.0

Q ss_pred             CCCCCeEEEEcCChhHHHH-HHHHHHcCCCeEEEEcCCc-chHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           82 VEKGSSVAVLGLGTVGLGA-VDGARMHGAAKIIGIDKNP-WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a-~~la~~~g~~~v~~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      .+..+++.++|.|++|..+ +++++..|+ .|.+.|... ...+.+++.|......+..   ...          .+.|+
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~---~~i----------~~~d~   70 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQAGAKIYIGHAE---EHI----------EGASV   70 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHTTCEEEESCCG---GGG----------TTCSE
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHCCCeEEECCcc---ccC----------CCCCE
Confidence            4456889999998889776 899999999 999999763 4555677788764444432   111          16788


Q ss_pred             EEEccCC
Q 024295          160 CFECTGV  166 (269)
Q Consensus       160 v~d~~g~  166 (269)
                      |+-..+-
T Consensus        71 vV~S~AI   77 (96)
T d1p3da1          71 VVVSSAI   77 (96)
T ss_dssp             EEECTTS
T ss_pred             EEECCCc
Confidence            8765543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=95.55  E-value=0.034  Score=40.53  Aligned_cols=91  Identities=18%  Similarity=0.276  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .|++|.|+|.|.+|...+++++..|. +|++.++..... .....+....        .++.+.++      ..|+|.-+
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~-~~~~~~~~~~--------~~l~~ll~------~sD~i~~~  111 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG-VERALGLQRV--------STLQDLLF------HSDCVTLH  111 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCTT-HHHHHTCEEC--------SSHHHHHH------HCSEEEEC
T ss_pred             eCceEEEeccccccccceeeeecccc-ceeeccCccccc-chhhhccccc--------cchhhccc------cCCEEEEe
Confidence            57899999999999999999999999 999998764332 2222232211        23433333      35777665


Q ss_pred             cCC-hhH----HHHHHHHcccCCcEEEEEccCC
Q 024295          164 TGV-PSL----LSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       164 ~g~-~~~----~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      ... +.+    -...+..++++ ..++.++...
T Consensus       112 ~plt~~T~~li~~~~l~~mk~~-a~lIN~sRG~  143 (193)
T d1mx3a1         112 CGLNEHNHHLINDFTVKQMRQG-AFLVNTARGG  143 (193)
T ss_dssp             CCCCTTCTTSBSHHHHTTSCTT-EEEEECSCTT
T ss_pred             ecccccchhhhhHHHHhccCCC-CeEEecCCce
Confidence            532 111    23567778885 7777776543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.013  Score=42.86  Aligned_cols=40  Identities=28%  Similarity=0.362  Sum_probs=35.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK  126 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~  126 (269)
                      ++|.|+|+|.+|...++++...|+ +|+..+++++..+.++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~   44 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSK   44 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHH
Confidence            589999999999998889889999 9999999987766553

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=95.48  E-value=0.031  Score=44.08  Aligned_cols=95  Identities=16%  Similarity=0.140  Sum_probs=64.2

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC------CC-----ceeeCCCCCCCccHHHHHHhh
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF------GM-----TDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~------g~-----~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      ...++|||+|.|. |..+-.+++.....+|.+++.+++-.+.++++      ++     -.++.      .+..+.+++ 
T Consensus        76 ~~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~------~Da~~~l~~-  147 (312)
T d1uira_          76 PEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVI------DDARAYLER-  147 (312)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEE------SCHHHHHHH-
T ss_pred             CCcceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEE------chHHHHhhh-
Confidence            3458999999875 77777788877666999999999888877763      11     11221      445555554 


Q ss_pred             hCCCCccEEE-Ecc---CC---------hhHHHHHHHHcccCCcEEEEE
Q 024295          152 THGMGVDYCF-ECT---GV---------PSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       152 ~~~~~~d~v~-d~~---g~---------~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      ++ ..+|+|+ |..   +.         ...++.+.+.|+++ |.++.-
T Consensus       148 ~~-~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gvlv~~  194 (312)
T d1uira_         148 TE-ERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG-GVMGMQ  194 (312)
T ss_dssp             CC-CCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE-EEEEEE
T ss_pred             cC-CcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCC-ceEEEe
Confidence            33 3899886 442   21         12467888999996 988764

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=95.45  E-value=0.035  Score=42.43  Aligned_cols=83  Identities=14%  Similarity=0.178  Sum_probs=52.0

Q ss_pred             CCCCCeEEEEcC-C--hhHHHHHHHHHHcCCCeEEEEcCCcchH-HHH-HhCCCc---eeeCCCC-CCCccHHHHHHhhh
Q 024295           82 VEKGSSVAVLGL-G--TVGLGAVDGARMHGAAKIIGIDKNPWKK-EKG-KAFGMT---DFINPDD-EPNKSISELVKGIT  152 (269)
Q Consensus        82 ~~~~~~vlI~G~-g--~~G~~a~~la~~~g~~~v~~~~~~~~~~-~~~-~~~g~~---~v~~~~~-~~~~~~~~~i~~~~  152 (269)
                      +-+|+++||+|+ |  ++|.+.++-+...|+ +|+.+++++++. +.+ ++++..   ...|-.+ .+.....+.+.+..
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~   81 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAI   81 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhcc
Confidence            347899999984 4  499999988889999 999999887665 333 335532   1222222 00122333344333


Q ss_pred             C-CCCccEEEEccC
Q 024295          153 H-GMGVDYCFECTG  165 (269)
Q Consensus       153 ~-~~~~d~v~d~~g  165 (269)
                      + ...+|++++++|
T Consensus        82 ~~~~~ld~~i~~ag   95 (268)
T d2h7ma1          82 GAGNKLDGVVHSIG   95 (268)
T ss_dssp             CTTCCEEEEEECCC
T ss_pred             ccCCCcceeeeccc
Confidence            2 247899999886

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=95.45  E-value=0.024  Score=44.89  Aligned_cols=100  Identities=14%  Similarity=0.158  Sum_probs=61.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCce--eeCCCCCCCccHHHHHHhhh-CC
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTD--FINPDDEPNKSISELVKGIT-HG  154 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~--v~~~~~~~~~~~~~~i~~~~-~~  154 (269)
                      ..+|++||-+++|+ |..++.+++  |+.+|++++.+++..+.+++    .|.+.  ++.      .+..+.++.+. .+
T Consensus       143 ~~~g~rVLDl~~gt-G~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~------~d~~~~~~~~~~~~  213 (318)
T d1wxxa2         143 RFRGERALDVFSYA-GGFALHLAL--GFREVVAVDSSAEALRRAEENARLNGLGNVRVLE------ANAFDLLRRLEKEG  213 (318)
T ss_dssp             GCCEEEEEEETCTT-THHHHHHHH--HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEE------SCHHHHHHHHHHTT
T ss_pred             HhCCCeeeccCCCC-cHHHHHHHh--cCCcEEeecchHHHHHHHHHHHHHcCCCCcceee------ccHHHHhhhhHhhh
Confidence            34789999997755 444555654  34499999999988888764    45432  222      23333333321 23


Q ss_pred             CCccEEE-Ecc--C--C----------hhHHHHHHHHcccCCcEEEEEccCC
Q 024295          155 MGVDYCF-ECT--G--V----------PSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       155 ~~~d~v~-d~~--g--~----------~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      ..||+|+ |.-  +  .          ...+..+++.++|| |.++.+....
T Consensus       214 ~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpG-G~Lv~~scs~  264 (318)
T d1wxxa2         214 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG-GILATASCSH  264 (318)
T ss_dssp             CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE-EEEEEEECCT
T ss_pred             cCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeCCc
Confidence            4899887 421  1  1          12355778899996 9998876543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=95.44  E-value=0.092  Score=37.25  Aligned_cols=97  Identities=15%  Similarity=0.199  Sum_probs=55.7

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC-ceeeCCCCCCCccHHHHHHhhhCCC
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM-TDFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      .+.++.+||-.++|. |..++.. ...|+ +++.++.+++..+.+++    ++. +.+.....   +.+..... . .+.
T Consensus        38 ~~~~g~~vLDl~~G~-G~~~i~a-~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~---d~~~~~~~-~-~~~  109 (171)
T d1ws6a1          38 RYPRRGRFLDPFAGS-GAVGLEA-ASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPV---EVFLPEAK-A-QGE  109 (171)
T ss_dssp             HCTTCCEEEEETCSS-CHHHHHH-HHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCH---HHHHHHHH-H-TTC
T ss_pred             cccCCCeEEEecccc-chhhhhh-hhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeeh---hccccccc-c-cCC
Confidence            567889999996543 3333443 34588 88899999988877754    453 34444332   22222222 2 234


Q ss_pred             CccEEE-Ec---cCChhHHHHHHH--HcccCCcEEEE
Q 024295          156 GVDYCF-EC---TGVPSLLSEALE--TTKVGKGKVIV  186 (269)
Q Consensus       156 ~~d~v~-d~---~g~~~~~~~~~~--~l~~~~G~~v~  186 (269)
                      .||+|| |.   .+....+..++.  .++++ |.++.
T Consensus       110 ~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~-g~ivi  145 (171)
T d1ws6a1         110 RFTVAFMAPPYAMDLAALFGELLASGLVEAG-GLYVL  145 (171)
T ss_dssp             CEEEEEECCCTTSCTTHHHHHHHHHTCEEEE-EEEEE
T ss_pred             ccceeEEccccccCHHHHHHHHHHcCCcCCC-eEEEE
Confidence            899997 42   233334444443  47775 76654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.44  E-value=0.01  Score=45.14  Aligned_cols=34  Identities=26%  Similarity=0.310  Sum_probs=30.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      .++|+|+|+|+.|++++..++..|. +|+++++++
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSP   37 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            5789999999999999999888899 999999754

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=95.43  E-value=0.0085  Score=45.79  Aligned_cols=97  Identities=16%  Similarity=0.188  Sum_probs=59.4

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-eeeCCCCCCCccHHHHHHhhhCCCC
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DFINPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      ++++++||-+|+|. |..+..+++. |..+|+++|.+++..+.+++    .+.. .+. ...   .+...  .....+..
T Consensus        22 ~~~~~~VLDlGCG~-G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~-f~~---~D~~~--~~~~~~~~   93 (252)
T d1ri5a_          22 TKRGDSVLDLGCGK-GGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVF-FRA---QDSYG--RHMDLGKE   93 (252)
T ss_dssp             CCTTCEEEEETCTT-TTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEE-EEE---SCTTT--SCCCCSSC
T ss_pred             CCCcCEEEEecccC-cHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHhcCCCcceE-EEE---cchhh--hccccccc
Confidence            56899999999986 7667777775 54489999999998888764    2321 111 000   00000  00111237


Q ss_pred             ccEEEEccCC----------hhHHHHHHHHcccCCcEEEEE
Q 024295          157 VDYCFECTGV----------PSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       157 ~d~v~d~~g~----------~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      ||+|+-.-.-          ...+..+.+.|++| |.++..
T Consensus        94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~g-G~~i~~  133 (252)
T d1ri5a_          94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPG-GYFIMT  133 (252)
T ss_dssp             EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEE-EEEEEE
T ss_pred             ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCC-CEEEEE
Confidence            9998753221          12456677889996 988753

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.40  E-value=0.014  Score=46.56  Aligned_cols=46  Identities=30%  Similarity=0.319  Sum_probs=38.1

Q ss_pred             cCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH
Q 024295           80 AKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK  126 (269)
Q Consensus        80 ~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~  126 (269)
                      .-+.+|++|||+|+ |-+|...+..+...|+ +|+++.|+.++.+.++
T Consensus         6 ~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~-~V~~~vR~~~~~~~~~   52 (342)
T d1y1pa1           6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQ   52 (342)
T ss_dssp             CSSCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCCCcCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCchhHHHHH
Confidence            34678999999986 8899999888888899 9999998877666554

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=95.39  E-value=0.022  Score=43.49  Aligned_cols=101  Identities=11%  Similarity=-0.118  Sum_probs=66.0

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CCceeeCCCCCCCccHHHHHHhhh-CCC
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GMTDFINPDDEPNKSISELVKGIT-HGM  155 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~~i~~~~-~~~  155 (269)
                      ......++.+||-+|+|. |..+..++...+. +|++++.+++-.+.+++. .....++...   .+    +.++. ...
T Consensus        87 ~~l~~~~~~~vLD~GcG~-G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~---~d----~~~~~~~~~  157 (254)
T d1xtpa_          87 ASLPGHGTSRALDCGAGI-GRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFIL---AS----METATLPPN  157 (254)
T ss_dssp             HTSTTCCCSEEEEETCTT-THHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEE---SC----GGGCCCCSS
T ss_pred             hhCCCCCCCeEEEecccC-ChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEE---cc----ccccccCCC
Confidence            444556778999999986 8888888877665 899999999988888763 2211121111   11    11222 223


Q ss_pred             CccEEEEccC-----Ch---hHHHHHHHHcccCCcEEEEEc
Q 024295          156 GVDYCFECTG-----VP---SLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       156 ~~d~v~d~~g-----~~---~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .||+|+-.-.     .+   ..+..+.+.|+++ |.++...
T Consensus       158 ~fD~I~~~~vl~hl~d~d~~~~l~~~~~~Lkpg-G~iii~e  197 (254)
T d1xtpa_         158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPN-GYIFFKE  197 (254)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             ccceEEeeccccccchhhhHHHHHHHHHhcCCC-cEEEEEe
Confidence            7999875331     11   3477888899996 9988754

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.39  E-value=0.017  Score=38.59  Aligned_cols=63  Identities=17%  Similarity=0.264  Sum_probs=43.2

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .++++|+|+|.+|+=.++.++.+|. +|..+.+++.            ++..-+   ++..+.+.+.....++.+..++
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~~------------ll~~~d---~ei~~~l~~~l~~~Gv~i~~~~   84 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMDK------------FLPAVD---EQVAKEAQKILTKQGLKILLGA   84 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS------------SSTTSC---HHHHHHHHHHHHHTTEEEEETC
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeecc------------cCCccc---chhHHHHHHHHHhcCceeecCc
Confidence            4889999999999999999999999 8999886532            111111   4555555554433466666553

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.011  Score=40.04  Aligned_cols=33  Identities=12%  Similarity=0.163  Sum_probs=30.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      ++++|+|+|.+|+-+++.++.+|. +|+.+.+++
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence            789999999999999999999999 999998763

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.37  E-value=0.027  Score=37.68  Aligned_cols=69  Identities=23%  Similarity=0.392  Sum_probs=48.2

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      ..++++++++|+|+|.+|.-++..++..|. +|..++++++=            +...  .++...+.+.+.....|+++
T Consensus        25 ~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~~------------l~~~--~~~~~~~~~~~~l~~~GV~i   89 (121)
T d1d7ya2          25 AGLRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPRL------------MSRA--APATLADFVARYHAAQGVDL   89 (121)
T ss_dssp             HHCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSST------------TTTT--SCHHHHHHHHHHHHTTTCEE
T ss_pred             HhhhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeecccc------------cccc--CCHHHHHHHHHHHHHCCcEE
Confidence            345678999999999999999999999998 99999876431            1100  01455555555544457887


Q ss_pred             EEEc
Q 024295          160 CFEC  163 (269)
Q Consensus       160 v~d~  163 (269)
                      .+++
T Consensus        90 ~~~~   93 (121)
T d1d7ya2          90 RFER   93 (121)
T ss_dssp             EESC
T ss_pred             EeCC
Confidence            7754

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.36  E-value=0.0092  Score=46.28  Aligned_cols=34  Identities=29%  Similarity=0.502  Sum_probs=30.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      +++|+|+|+|+.|++|+..++..|. +|+++++++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            5789999999999999999999999 999998653

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=95.35  E-value=0.012  Score=45.65  Aligned_cols=96  Identities=16%  Similarity=0.057  Sum_probs=65.9

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC-----C-----ceeeCCCCCCCccHHHHHHhhh
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG-----M-----TDFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g-----~-----~~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      .+.++|||+|.|. |.++-.+++..+.++|.+++.+++-.+.++++-     +     -.++.      .+..+.+++ +
T Consensus        74 ~~p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~------~D~~~~l~~-~  145 (274)
T d1iy9a_          74 PNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQV------DDGFMHIAK-S  145 (274)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEE------SCSHHHHHT-C
T ss_pred             CCcceEEecCCCC-cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEe------chHHHHHhh-c
Confidence            3558999999876 777778888877779999999998888887732     1     11222      333344443 3


Q ss_pred             CCCCccEEE-EccC---------ChhHHHHHHHHcccCCcEEEEEc
Q 024295          153 HGMGVDYCF-ECTG---------VPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       153 ~~~~~d~v~-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      + ..+|+|+ |...         ....++.+-+.|+++ |.++.-.
T Consensus       146 ~-~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~-Gv~v~q~  189 (274)
T d1iy9a_         146 E-NQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-GIFVAQT  189 (274)
T ss_dssp             C-SCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-EEEEEEC
T ss_pred             C-CCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCC-ceEEEec
Confidence            3 4899886 4432         122478888999996 9988754

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.31  E-value=0.023  Score=38.11  Aligned_cols=71  Identities=15%  Similarity=0.195  Sum_probs=47.4

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      ....-.+.++|+|+|+|.+|+-+++.+...|. +|+.+++.+.-            +...  -+++..+.+.+.....++
T Consensus        23 ~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~~~------------l~~~--~d~~~~~~~~~~l~~~gv   87 (123)
T d1nhpa2          23 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILDRP------------LGVY--LDKEFTDVLTEEMEANNI   87 (123)
T ss_dssp             HHHTCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSST------------TTTT--CCHHHHHHHHHHHHTTTE
T ss_pred             HHhhccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecCcc------------cccc--cchhhHHHHHHHhhcCCe
Confidence            33344467899999999999999999999999 99999875321            1110  014455555554444477


Q ss_pred             cEEEEc
Q 024295          158 DYCFEC  163 (269)
Q Consensus       158 d~v~d~  163 (269)
                      ++.+++
T Consensus        88 ~~~~~~   93 (123)
T d1nhpa2          88 TIATGE   93 (123)
T ss_dssp             EEEESC
T ss_pred             EEEeCc
Confidence            777654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.29  E-value=0.065  Score=38.21  Aligned_cols=42  Identities=24%  Similarity=0.259  Sum_probs=36.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG  129 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g  129 (269)
                      +|-|+|.|.+|...+.-+...|+ +|++.++++++.+.+.+.+
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~-~V~~~dr~~~~~~~l~~~~   44 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNRTYSKSEEFMKAN   44 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHT
T ss_pred             EEEEEeehHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcC
Confidence            47789999999998888888899 9999999999998886654

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.28  E-value=0.067  Score=38.55  Aligned_cols=90  Identities=24%  Similarity=0.298  Sum_probs=60.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .++++.|+|.|.+|...+++++..|. +|++.++...+... ...+...         .++.+.++      ..|+|.-+
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~~~~-~~~~~~~---------~~l~ell~------~sDiv~~~  105 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSPARA-AQLGIEL---------LSLDDLLA------RADFISVH  105 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCHHHH-HHHTCEE---------CCHHHHHH------HCSEEEEC
T ss_pred             cceeeeeccccchhHHHHHHhhhccc-eEEeecCCCChhHH-hhcCcee---------ccHHHHHh------hCCEEEEc
Confidence            57899999999999999999999999 99999976544433 2333221         22333333      45888766


Q ss_pred             cCC-hhH----HHHHHHHcccCCcEEEEEccCC
Q 024295          164 TGV-PSL----LSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       164 ~g~-~~~----~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      +.. +.+    -...++.++++ ..+|.++...
T Consensus       106 ~Plt~~T~~lin~~~l~~mk~~-a~lIN~sRG~  137 (184)
T d1ygya1         106 LPKTPETAGLIDKEALAKTKPG-VIIVNAARGG  137 (184)
T ss_dssp             CCCSTTTTTCBCHHHHTTSCTT-EEEEECSCTT
T ss_pred             CCCCchhhhhhhHHHHhhhCCC-ceEEEecchh
Confidence            532 211    24677788885 8888877543

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=95.25  E-value=0.086  Score=36.99  Aligned_cols=88  Identities=14%  Similarity=0.142  Sum_probs=56.5

Q ss_pred             eEEEEcCChhHHH-HHHHHHHc-CCCeEEEE-cCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           87 SVAVLGLGTVGLG-AVDGARMH-GAAKIIGI-DKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        87 ~vlI~G~g~~G~~-a~~la~~~-g~~~v~~~-~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      +|.|+|+|.+|.- .....+.. +. +++++ ++++++.+. .++++... +       .++. .+.   +  .+|+|+-
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~-~i~~v~d~~~~~~~~~~~~~~~~~-~-------~~~~-~l~---~--~~D~V~I   67 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDW-TLQGAWSPTRAKALPICESWRIPY-A-------DSLS-SLA---A--SCDAVFV   67 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSE-EEEEEECSSCTTHHHHHHHHTCCB-C-------SSHH-HHH---T--TCSEEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEEechhHhhhhhhhcccccc-c-------ccch-hhh---h--hcccccc
Confidence            5789999998864 45555544 66 55544 566666555 45566542 2       2222 222   1  6899999


Q ss_pred             ccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          163 CTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       163 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      ++....+.+.+...+..  |+-|++..|.
T Consensus        68 ~tp~~~h~~~~~~al~~--gk~V~~EKPl   94 (164)
T d1tlta1          68 HSSTASHFDVVSTLLNA--GVHVCVDKPL   94 (164)
T ss_dssp             CSCTTHHHHHHHHHHHT--TCEEEEESSS
T ss_pred             cccchhccccccccccc--cceeeccccc
Confidence            99877777788887877  5667776554

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.23  E-value=0.041  Score=41.52  Aligned_cols=104  Identities=14%  Similarity=0.088  Sum_probs=62.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCC------eEEEEcCCcchHHHHH----hCCCce---eeCCCCCCCccHHHHHHhhh
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAA------KIIGIDKNPWKKEKGK----AFGMTD---FINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~------~v~~~~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~~~i~~~~  152 (269)
                      .|||+|+ +++|.+.+..+...|++      .|+..++++++.+.+.    +.|...   ..|-.+  .++..+.+.+..
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~   80 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD--MADVRRLTTHIV   80 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHH
Confidence            3688886 89999988888888883      2888899887776543    344322   223332  122222222221


Q ss_pred             C-CCCccEEEEccCChh-------------------------HHHHHHHHccc-CCcEEEEEccCCC
Q 024295          153 H-GMGVDYCFECTGVPS-------------------------LLSEALETTKV-GKGKVIVIGVGVD  192 (269)
Q Consensus       153 ~-~~~~d~v~d~~g~~~-------------------------~~~~~~~~l~~-~~G~~v~~g~~~~  192 (269)
                      . -..+|+++++.|...                         ..+.++..++. ++|+++.++...+
T Consensus        81 ~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~  147 (240)
T d2bd0a1          81 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAA  147 (240)
T ss_dssp             HHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             HHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhh
Confidence            1 127999999987511                         23445555532 2389999875543

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.22  E-value=0.057  Score=36.42  Aligned_cols=72  Identities=15%  Similarity=0.231  Sum_probs=44.3

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      +|.|+|+ |-+|++..+++...+.+-+..++.+..                     ..+          ..+|+++|.+.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~---------------------~~~----------~~~DVvIDFS~   50 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV---------------------EEL----------DSPDVVIDFSS   50 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE---------------------EEC----------SCCSEEEECSC
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH---------------------HHh----------ccCCEEEEecC
Confidence            5889996 999999999999888833334332210                     000          15678888775


Q ss_pred             ChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          166 VPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       166 ~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      .. .....++..... +.=+.+|.++
T Consensus        51 p~-~~~~~l~~~~~~-~~p~ViGTTG   74 (128)
T d1vm6a3          51 PE-ALPKTVDLCKKY-RAGLVLGTTA   74 (128)
T ss_dssp             GG-GHHHHHHHHHHH-TCEEEECCCS
T ss_pred             HH-HHHHHHHHHHhc-CCCEEEEcCC
Confidence            44 445555555552 5555666554

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.22  E-value=0.022  Score=40.94  Aligned_cols=48  Identities=17%  Similarity=0.068  Sum_probs=35.7

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG  125 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~  125 (269)
                      |.+...--++++|||+|+|+++.+++..+..  ..+|+++.|+.++.+.+
T Consensus         9 l~~~~~~~~~k~vlIlGaGG~arai~~aL~~--~~~i~I~nR~~~ka~~l   56 (177)
T d1nvta1           9 LEEEIGRVKDKNIVIYGAGGAARAVAFELAK--DNNIIIANRTVEKAEAL   56 (177)
T ss_dssp             HHHHHCCCCSCEEEEECCSHHHHHHHHHHTS--SSEEEEECSSHHHHHHH
T ss_pred             HHHhCCCcCCCEEEEECCcHHHHHHHHHHcc--ccceeeehhhhhHHHHH
Confidence            4333333478999999999999988766543  34899999998887655

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.22  E-value=0.14  Score=36.56  Aligned_cols=91  Identities=16%  Similarity=0.182  Sum_probs=61.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHc-CCCeEEEE-cCCcchHHHH-HhCCCc---eeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           87 SVAVLGLGTVGLGAVDGARMH-GAAKIIGI-DKNPWKKEKG-KAFGMT---DFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~-g~~~v~~~-~~~~~~~~~~-~~~g~~---~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      ++.|+|+|.+|..-+..++.. +. +++++ ++++++.+.+ ++++..   .++       .++.+.+.    ...+|+|
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ll~----~~~iD~v   70 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNA-TISGVASRSLEKAKAFATANNYPESTKIH-------GSYESLLE----DPEIDAL   70 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTTCCTTCEEE-------SSHHHHHH----CTTCCEE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCC-EEEEEEeCCccccccchhccccccceeec-------CcHHHhhh----cccccee
Confidence            578999999998877777765 55 66655 6666665544 455531   233       23433332    2379999


Q ss_pred             EEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          161 FECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       161 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      +-++....+.+.+..++..  |.-+.+..+.
T Consensus        71 ~I~tp~~~h~~~~~~~l~~--g~~v~~EKP~   99 (184)
T d1ydwa1          71 YVPLPTSLHVEWAIKAAEK--GKHILLEKPV   99 (184)
T ss_dssp             EECCCGGGHHHHHHHHHTT--TCEEEECSSC
T ss_pred             eecccchhhcchhhhhhhc--cceeeccccc
Confidence            9999887788888888887  5666776554

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=95.22  E-value=0.037  Score=43.49  Aligned_cols=73  Identities=19%  Similarity=0.285  Sum_probs=44.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC--cch---HHHHHhCCCceee--CCCCCCCccHHHHHHhhhCCCCcc
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN--PWK---KEKGKAFGMTDFI--NPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~--~~~---~~~~~~~g~~~v~--~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      +|||+|+ |-+|...+..+...|+ +|+++++-  ..+   ...++..+.-.++  |-.+  ...+.+.+.+    .++|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~-~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~--~~~l~~~~~~----~~~d   74 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI-DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN--KNDVTRLITK----YMPD   74 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTC--HHHHHHHHHH----HCCS
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhHHHHhhccCCcEEEEcccCC--HHHHHHHHHh----cCCc
Confidence            6999986 9999999998888899 99998732  222   2233333322222  2221  1233333332    2689


Q ss_pred             EEEEccCC
Q 024295          159 YCFECTGV  166 (269)
Q Consensus       159 ~v~d~~g~  166 (269)
                      +||.+++.
T Consensus        75 ~Vih~aa~   82 (338)
T d1orra_          75 SCFHLAGQ   82 (338)
T ss_dssp             EEEECCCC
T ss_pred             eEEeeccc
Confidence            99998753

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.01  E-value=0.033  Score=44.28  Aligned_cols=38  Identities=24%  Similarity=0.121  Sum_probs=33.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchH
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKK  122 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~  122 (269)
                      ++++|||+|+ |-+|...++.+...|+ .|+++++++.+.
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~~~   45 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTV   45 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCcc
Confidence            5799999986 8999999999999999 999999876543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.97  E-value=0.015  Score=42.36  Aligned_cols=85  Identities=9%  Similarity=0.019  Sum_probs=55.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC------ceeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM------TDFINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~------~~v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      .+|.|+|+|..|.+.+.++...|. +|...+++++..+.+++.+.      ...+..+-....++.+.+.      +.|+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~------~ad~   80 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN------GAEI   80 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT------TCSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccC------CCCE
Confidence            469999999999999888887787 89999999888887754321      1111100000123333332      6799


Q ss_pred             EEEccCChhHHHHHHHHcc
Q 024295          160 CFECTGVPSLLSEALETTK  178 (269)
Q Consensus       160 v~d~~g~~~~~~~~~~~l~  178 (269)
                      ++-++... .+...++.++
T Consensus        81 iiiavPs~-~~~~~~~~~~   98 (189)
T d1n1ea2          81 ILFVIPTQ-FLRGFFEKSG   98 (189)
T ss_dssp             EEECSCHH-HHHHHHHHHC
T ss_pred             EEEcCcHH-HHHHHHHHHH
Confidence            99999764 5566665543

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=94.96  E-value=0.085  Score=39.78  Aligned_cols=35  Identities=31%  Similarity=0.417  Sum_probs=31.1

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID  116 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~  116 (269)
                      .--++.+|+|.|.|.+|..+++++...|+ +|++++
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vs   61 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVS   61 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEee
Confidence            33478999999999999999999999999 888776

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.95  E-value=0.016  Score=38.96  Aligned_cols=64  Identities=14%  Similarity=0.187  Sum_probs=45.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      .++++|+|+|.+|+=+++.+..+|. +|..+.+++.-            +..-+   ++..+.+.+...+.|+++.+++.
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~~~------------l~~~d---~~~~~~l~~~l~~~GI~i~~~~~   88 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASEI------------VPTMD---AEIRKQFQRSLEKQGMKFKLKTK   88 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSSS------------STTSC---HHHHHHHHHHHHHSSCCEECSEE
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEcccc------------Cchhh---hcchhhhhhhhhcccceEEcCCc
Confidence            4789999999999999999999999 99999876422            11111   45555555544444777776653

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.026  Score=43.61  Aligned_cols=105  Identities=11%  Similarity=0.012  Sum_probs=59.5

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHc-----CCC-eEEEEcCCcchHHHHHhC-C-----CceeeCCCCCCCccHHHHHH
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMH-----GAA-KIIGIDKNPWKKEKGKAF-G-----MTDFINPDDEPNKSISELVK  149 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~-----g~~-~v~~~~~~~~~~~~~~~~-g-----~~~v~~~~~~~~~~~~~~i~  149 (269)
                      .++.-+||-+|+|+ |..+..+++.+     +.. .+++++.++...+.+++. .     ....++....+.+.+.....
T Consensus        38 ~~~~~~VLDiGcG~-G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (280)
T d1jqea_          38 TKSEIKILSIGGGA-GEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML  116 (280)
T ss_dssp             TCSEEEEEEETCTT-SHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT
T ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhc
Confidence            34445799999875 66555555432     221 678999988887777652 1     11112222200122222222


Q ss_pred             hhhCCCCccEEEEcc-----CC-hhHHHHHHHHcccCCcEEEEEc
Q 024295          150 GITHGMGVDYCFECT-----GV-PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       150 ~~~~~~~~d~v~d~~-----g~-~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .......||+|+-.-     .. ...+..+.+.|+++ |.++...
T Consensus       117 ~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lkpg-G~l~i~~  160 (280)
T d1jqea_         117 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN-AKMLIIV  160 (280)
T ss_dssp             TSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             ccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCC-CEEEEEE
Confidence            223345899986522     22 34688999999996 9887664

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.044  Score=40.99  Aligned_cols=75  Identities=19%  Similarity=0.254  Sum_probs=46.4

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhCCCcee-eCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKAFGMTDF-INPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      ++++|||+|+ |-+|...++.+...|. .+|++++|++.+...-+....... .|..     +. +.+.+..  .++|++
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~-----~~-~~~~~~~--~~~d~v   84 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFE-----KL-DDYASAF--QGHDVG   84 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGG-----GG-GGGGGGG--SSCSEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccc-----cc-ccccccc--cccccc
Confidence            3578999986 9999999888877774 489999987644332211112222 2221     11 1222222  278999


Q ss_pred             EEccCC
Q 024295          161 FECTGV  166 (269)
Q Consensus       161 ~d~~g~  166 (269)
                      +.++|.
T Consensus        85 i~~~~~   90 (232)
T d2bkaa1          85 FCCLGT   90 (232)
T ss_dssp             EECCCC
T ss_pred             cccccc
Confidence            999875

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.85  E-value=0.0095  Score=44.41  Aligned_cols=100  Identities=21%  Similarity=0.187  Sum_probs=60.6

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhh---h
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGI---T  152 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~---~  152 (269)
                      +..+.++||-+|++. |..++.+|+.+.. .+|++++.+++..+.+++    .|...-+....   .+..+.+.++   .
T Consensus        53 ~~~kpk~ILEiGt~~-G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~---Gd~~e~l~~l~~~~  128 (214)
T d2cl5a1          53 REYSPSLVLELGAYC-GYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILN---GASQDLIPQLKKKY  128 (214)
T ss_dssp             HHHCCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE---SCHHHHGGGHHHHS
T ss_pred             HhhCCCEEEEEccCc-hhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeee---ccccccccchhhcc
Confidence            334557999999865 8888889987632 399999999887777653    45432222222   4444444433   2


Q ss_pred             CCCCccEEEEccCChh-----HHHHHHHHcccCCcEEE
Q 024295          153 HGMGVDYCFECTGVPS-----LLSEALETTKVGKGKVI  185 (269)
Q Consensus       153 ~~~~~d~v~d~~g~~~-----~~~~~~~~l~~~~G~~v  185 (269)
                      +...+|++|--.....     .+...++.+++| |.++
T Consensus       129 ~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpG-GvIv  165 (214)
T d2cl5a1         129 DVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKG-TVLL  165 (214)
T ss_dssp             CCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEE-EEEE
T ss_pred             cccccceeeecccccccccHHHHHHHhCccCCC-cEEE
Confidence            2347998874332221     134455678995 7554

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.82  E-value=0.025  Score=37.92  Aligned_cols=62  Identities=11%  Similarity=0.145  Sum_probs=42.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .++++|+|+|.+|+=.++.++.+|. +|..+.+++    .++.+            +.+..+.+.+.....|+++..++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~~----~l~~~------------D~~~~~~l~~~l~~~Gv~i~~~~   81 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGL-DVTVMVRSI----LLRGF------------DQDMANKIGEHMEEHGIKFIRQF   81 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS----SSTTS------------CHHHHHHHHHHHHHTTEEEEESC
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCC-eEEEEEech----hhccC------------CHHHHHHHHHHHHHCCCEEEECC
Confidence            3679999999999999999999999 888887541    12111            14455555554444477777664

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.007  Score=45.29  Aligned_cols=95  Identities=11%  Similarity=-0.004  Sum_probs=63.1

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC----Cc--eeeCCCCCCCccHHHHHHhhh-C
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG----MT--DFINPDDEPNKSISELVKGIT-H  153 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g----~~--~v~~~~~~~~~~~~~~i~~~~-~  153 (269)
                      ...++.+||-+|+|. |..+..+++..+. +|++++.+++..+.+++..    ..  .++..      ++    .++. .
T Consensus        57 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~------d~----~~~~~~  124 (222)
T d2ex4a1          57 NKTGTSCALDCGAGI-GRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCC------GL----QDFTPE  124 (222)
T ss_dssp             -CCCCSEEEEETCTT-THHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEEC------CG----GGCCCC
T ss_pred             CCCCCCEEEEeccCC-CHhhHHHHHhcCC-EEEEeecCHHHhhccccccccccccccccccc------cc----cccccc
Confidence            456778999999986 8888777766555 9999999998888887632    11  12211      11    1121 2


Q ss_pred             CCCccEEEEcc-----CCh---hHHHHHHHHcccCCcEEEEEc
Q 024295          154 GMGVDYCFECT-----GVP---SLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       154 ~~~~d~v~d~~-----g~~---~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ...||+|+..-     ..+   ..+..+.+.|+++ |.++...
T Consensus       125 ~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~-G~~~i~~  166 (222)
T d2ex4a1         125 PDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN-GIIVIKD  166 (222)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cccccccccccccccchhhhhhhHHHHHHHhcCCc-ceEEEEE
Confidence            33899997532     222   3577888899996 9988764

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.81  E-value=0.039  Score=43.00  Aligned_cols=139  Identities=12%  Similarity=0.065  Sum_probs=80.2

Q ss_pred             CcccceEeeccC---ceEEcCCCCCcccccccccchhhhHHHHHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEE
Q 024295           37 STWSEYMVIDAN---YVVKVDPSIDPSDASFLSCGFTTGYGAAWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKII  113 (269)
Q Consensus        37 g~~a~~~~v~~~---~~~~vp~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~  113 (269)
                      ..||+..+++..   .+.-+...+-..+.--....-..++-.+..   ...-++|||+|.|. |..+-.+++..+.++|.
T Consensus        42 S~yQ~i~i~~s~~~G~~l~LDg~~q~~~~De~~YhE~l~h~pl~~---~~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~  117 (295)
T d1inla_          42 SDIQRIDIFENPDLGVVFALDGITMTTEKDEFMYHEMLAHVPMFL---HPNPKKVLIIGGGD-GGTLREVLKHDSVEKAI  117 (295)
T ss_dssp             CSSCEEEEEEETTTEEEEEETTEEEEETTTHHHHHHHHHHHHHHH---SSSCCEEEEEECTT-CHHHHHHTTSTTCSEEE
T ss_pred             CCCcEEEEEEcCCcceEEEECCEEEEecCchhhhhhhhcchhHhh---CCCCceEEEecCCc-hHHHHHHHhcCCCceEE
Confidence            467766666532   334455433333332211122222222211   23458999998865 66677888877777999


Q ss_pred             EEcCCcchHHHHHhCCC----------ceeeCCCCCCCccHHHHHHhhhCCCCccEEE-EccC---C-------hhHHHH
Q 024295          114 GIDKNPWKKEKGKAFGM----------TDFINPDDEPNKSISELVKGITHGMGVDYCF-ECTG---V-------PSLLSE  172 (269)
Q Consensus       114 ~~~~~~~~~~~~~~~g~----------~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~-d~~g---~-------~~~~~~  172 (269)
                      +++.+++-.+.++++-.          -.++.      .|..+.+++ ++ ..+|+|+ |...   .       ...++.
T Consensus       118 ~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~------~Da~~~l~~-~~-~~yDvIi~D~~dp~~~~~~~L~t~efy~~  189 (295)
T d1inla_         118 LCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI------ANGAEYVRK-FK-NEFDVIIIDSTDPTAGQGGHLFTEEFYQA  189 (295)
T ss_dssp             EEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHGGG-CS-SCEEEEEEEC----------CCSHHHHHH
T ss_pred             EecCCHHHHHHHHHHHHhhcccccCCCcEEEh------hhHHHHHhc-CC-CCCCEEEEcCCCCCcCchhhhccHHHHHH
Confidence            99999988888877321          01221      344444544 33 3899886 4432   1       224778


Q ss_pred             HHHHcccCCcEEEEEc
Q 024295          173 ALETTKVGKGKVIVIG  188 (269)
Q Consensus       173 ~~~~l~~~~G~~v~~g  188 (269)
                      +.+.|+++ |.++.-.
T Consensus       190 ~~~~L~~~-Gi~v~q~  204 (295)
T d1inla_         190 CYDALKED-GVFSAET  204 (295)
T ss_dssp             HHHHEEEE-EEEEEEC
T ss_pred             HHhhcCCC-cEEEEec
Confidence            88999996 9888754

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.80  E-value=0.025  Score=38.12  Aligned_cols=63  Identities=10%  Similarity=0.097  Sum_probs=44.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .++++|+|+|.+|+=+++..+.+|. +|+.+.+.++            ++-.-+   ++..+.+.+.....++.+..++
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~~~------------il~~~d---~~~~~~l~~~l~~~gv~~~~~~   88 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMDG------------LMQGAD---RDLVKVWQKQNEYRFDNIMVNT   88 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSSS------------SSTTSC---HHHHHHHHHHHGGGEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEeecc------------ccccch---hhHHHHHHHHHHHcCcccccCc
Confidence            5889999999999999999999999 9999986531            221112   5566666655444466666554

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.74  E-value=0.14  Score=35.31  Aligned_cols=40  Identities=18%  Similarity=0.253  Sum_probs=32.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA  127 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~  127 (269)
                      +|-|+|.|.+|...+.-++..|. .|++.++.+++....+.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~-~v~~~~~~~~~~~~~~~   41 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLEGRSPSTIERA   41 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECCTTCCHHHHHHH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCC-eEEEEcCchhHHHHHhh
Confidence            47889999999999888888899 88888877666555443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.68  E-value=0.024  Score=40.86  Aligned_cols=40  Identities=30%  Similarity=0.320  Sum_probs=34.3

Q ss_pred             eEEEE-cCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295           87 SVAVL-GLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA  127 (269)
Q Consensus        87 ~vlI~-G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~  127 (269)
                      +|.|+ |+|.+|.+..+.+...|+ +|+..+|++++.+.+.+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~e~~~~l~~   42 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAKAA   42 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence            57888 579999999999999999 99999999988776533

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=94.65  E-value=0.017  Score=44.14  Aligned_cols=103  Identities=14%  Similarity=0.066  Sum_probs=63.3

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCceeeCCCCCCCccHHHHHHhh
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      +.....+.+..+||-+|+|. |..+..+++...-.++++++. ++..+.+++    .+...-+....   .++    .+.
T Consensus        72 ~~~~~d~~~~~~VLDvGcG~-G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~---~D~----~~~  142 (253)
T d1tw3a2          72 PAAAYDWTNVRHVLDVGGGK-GGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVE---GDF----FEP  142 (253)
T ss_dssp             HHHHSCCTTCSEEEEETCTT-SHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEE---CCT----TSC
T ss_pred             HHhhcCCccCCEEEEeCCCC-CHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhcc---ccc----hhh
Confidence            34556677889999999986 889999999874338888886 444444433    33211111111   111    011


Q ss_pred             hCCCCccEEEEcc-----CCh---hHHHHHHHHcccCCcEEEEEcc
Q 024295          152 THGMGVDYCFECT-----GVP---SLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       152 ~~~~~~d~v~d~~-----g~~---~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      .+ .++|+|+-..     ..+   ..+..+.+.|+|| |+++....
T Consensus       143 ~~-~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPG-G~l~i~e~  186 (253)
T d1tw3a2         143 LP-RKADAIILSFVLLNWPDHDAVRILTRCAEALEPG-GRILIHER  186 (253)
T ss_dssp             CS-SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred             cc-cchhheeeccccccCCchhhHHHHHHHHHhcCCC-cEEEEEec
Confidence            12 2789887432     112   2477889999996 99988754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.62  E-value=0.026  Score=42.28  Aligned_cols=36  Identities=22%  Similarity=0.221  Sum_probs=32.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      ...++|+|+|+|+.|+.++..++..|. +|+.+++++
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeecc
Confidence            457899999999999999999999999 999998765

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.036  Score=42.01  Aligned_cols=35  Identities=29%  Similarity=0.405  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      ++.+|+|+|+|++|..++..+...|.++++.+|.+
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            45789999999999999999999999999999854

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=94.52  E-value=0.039  Score=40.34  Aligned_cols=90  Identities=22%  Similarity=0.205  Sum_probs=59.2

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      .+.++.+||-+|+|. |..+..+     . +++++|.+++..+.+++.+...+....+    ++     . ..+..||+|
T Consensus        33 ~~~~~~~vLDiGcG~-G~~~~~~-----~-~~~giD~s~~~~~~a~~~~~~~~~~d~~----~l-----~-~~~~~fD~I   95 (208)
T d1vlma_          33 CLLPEGRGVEIGVGT-GRFAVPL-----K-IKIGVEPSERMAEIARKRGVFVLKGTAE----NL-----P-LKDESFDFA   95 (208)
T ss_dssp             HHCCSSCEEEETCTT-STTHHHH-----T-CCEEEESCHHHHHHHHHTTCEEEECBTT----BC-----C-SCTTCEEEE
T ss_pred             hhCCCCeEEEECCCC-ccccccc-----c-eEEEEeCChhhccccccccccccccccc----cc-----c-ccccccccc
Confidence            345677899999875 6554444     2 5789999999999998876543332221    11     0 122379999


Q ss_pred             EEcc-----CC-hhHHHHHHHHcccCCcEEEEEc
Q 024295          161 FECT-----GV-PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       161 ~d~~-----g~-~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +-.-     .. ...++++.+.|++| |+++...
T Consensus        96 ~~~~~l~h~~d~~~~l~~~~~~L~pg-G~l~i~~  128 (208)
T d1vlma_          96 LMVTTICFVDDPERALKEAYRILKKG-GYLIVGI  128 (208)
T ss_dssp             EEESCGGGSSCHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             ccccccccccccccchhhhhhcCCCC-ceEEEEe
Confidence            7533     22 22578899999996 9887764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.51  E-value=0.021  Score=41.42  Aligned_cols=39  Identities=33%  Similarity=0.417  Sum_probs=33.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG  125 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~  125 (269)
                      ++|.|+|+|.+|...+.++...|+ +|+..+++++..+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~   43 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQG   43 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhh
Confidence            679999999999988888888899 999999998776654

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.49  E-value=0.12  Score=40.39  Aligned_cols=103  Identities=14%  Similarity=0.038  Sum_probs=65.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC--ceeeCCCC--CCCccHHHHHHhhhCCCCcc
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM--TDFINPDD--EPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~--~~v~~~~~--~~~~~~~~~i~~~~~~~~~d  158 (269)
                      ...++|||+|.|. |..+-.+++....++|.+++.+++-.+.++++-.  ...++...  --..|..+.+++ ++ ..+|
T Consensus       105 ~~pk~VLIiGgG~-G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~-~~-~~yD  181 (312)
T d2b2ca1         105 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN-HK-NEFD  181 (312)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH-CT-TCEE
T ss_pred             CCCCeEEEeCCCc-hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHh-CC-CCCC
Confidence            3457899999876 6677788887777799999999998888887421  01111110  001445555654 33 3899


Q ss_pred             EEE-EccC---C------hhHHHHHHHHcccCCcEEEEEcc
Q 024295          159 YCF-ECTG---V------PSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       159 ~v~-d~~g---~------~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      +|+ |...   .      ...++.+-+.|+++ |.++.-+.
T Consensus       182 vII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~-Gi~v~q~~  221 (312)
T d2b2ca1         182 VIITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQGE  221 (312)
T ss_dssp             EEEECCC-------------HHHHHHHHEEEE-EEEEEECC
T ss_pred             EEEEcCCCCCCcchhhhhHHHHHHHHhhcCCC-cEEEEecC
Confidence            987 3321   1      11366778899996 99887653

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.49  E-value=0.017  Score=43.53  Aligned_cols=37  Identities=19%  Similarity=0.195  Sum_probs=31.9

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchH
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKK  122 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~  122 (269)
                      ++++||+|+ +++|.+.++.+...|+ +|+.+++++++.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~   38 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRREGE   38 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCCSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcccc
Confidence            467899986 8999999999999999 999999887654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.49  E-value=0.18  Score=31.37  Aligned_cols=65  Identities=14%  Similarity=0.284  Sum_probs=46.2

Q ss_pred             eEEEEcCChhHHHH-HHHHHHcCCCeEEEEcCCc-chHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           87 SVAVLGLGTVGLGA-VDGARMHGAAKIIGIDKNP-WKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        87 ~vlI~G~g~~G~~a-~~la~~~g~~~v~~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      +|-++|-|++|..+ +++++..|+ .|.+.|..+ +..+.+++.|......++.   +++          .+.|+|+-+.
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~---~~i----------~~~d~vV~Ss   68 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERTAYLRKLGIPIFVPHSA---DNW----------YDPDLVIKTP   68 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCCEESSCCT---TSC----------CCCSEEEECT
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhHHHHHHCCCeEEeeecc---ccc----------CCCCEEEEec
Confidence            56778988889765 688889999 999999876 4556688899765443332   222          2678887665


Q ss_pred             C
Q 024295          165 G  165 (269)
Q Consensus       165 g  165 (269)
                      .
T Consensus        69 A   69 (89)
T d1j6ua1          69 A   69 (89)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=94.47  E-value=0.078  Score=41.83  Aligned_cols=73  Identities=12%  Similarity=0.074  Sum_probs=46.1

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC-Cceee-CCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG-MTDFI-NPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g-~~~v~-~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      +|||+|+ |-+|...++.+...|..+|+++++...+...+.+.. ...+. |-.+  ..++.+...+     ++|+|+.+
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~--~~~~~~~~~~-----~~d~Vih~   74 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISI--HSEWIEYHVK-----KCDVVLPL   74 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTT--CSHHHHHHHH-----HCSEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCC--hHHHHHHHHh-----CCCccccc
Confidence            5899986 999999988887777438999987665554443322 22222 1111  1344443332     68999998


Q ss_pred             cCC
Q 024295          164 TGV  166 (269)
Q Consensus       164 ~g~  166 (269)
                      ++.
T Consensus        75 a~~   77 (342)
T d2blla1          75 VAI   77 (342)
T ss_dssp             BCC
T ss_pred             ccc
Confidence            864

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.45  E-value=0.057  Score=37.56  Aligned_cols=70  Identities=17%  Similarity=0.166  Sum_probs=43.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccHHHHHHhhhCCC
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      -+|.+||-+++|+ |...+.. ...|+++|+.++.+++..+.+++    ++..   .++.      .+..+.+.. ..+ 
T Consensus        13 ~~g~~vlDl~~Gt-G~~~iea-~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~------~D~~~~l~~-~~~-   82 (152)
T d2esra1          13 FNGGRVLDLFAGS-GGLAIEA-VSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK------MEAERAIDC-LTG-   82 (152)
T ss_dssp             CCSCEEEEETCTT-CHHHHHH-HHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC------SCHHHHHHH-BCS-
T ss_pred             CCCCeEEEcCCcc-CHHHHHH-HHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhc------ccccccccc-ccc-
Confidence            3688999996543 3333343 34688899999999877776654    4542   2332      344444433 333 


Q ss_pred             CccEEEE
Q 024295          156 GVDYCFE  162 (269)
Q Consensus       156 ~~d~v~d  162 (269)
                      .||+||-
T Consensus        83 ~fDiIf~   89 (152)
T d2esra1          83 RFDLVFL   89 (152)
T ss_dssp             CEEEEEE
T ss_pred             ccceeEe
Confidence            8999974

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.18  Score=33.65  Aligned_cols=89  Identities=22%  Similarity=0.267  Sum_probs=52.6

Q ss_pred             CCCeEEEEcCCh--hH------HH---HHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhh
Q 024295           84 KGSSVAVLGLGT--VG------LG---AVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        84 ~~~~vlI~G~g~--~G------~~---a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      .-++|||+|+|+  +|      ++   |+..+|..|+ +++.+..+++....-.+. +|.++-..     -..+.+.++.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~-~~iliN~NP~TVstd~d~-aD~lYfeP-----lt~e~v~~Ii   78 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY-RVINVNSNPATIMTDPEM-ADATYIEP-----IHWEVVRKII   78 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC-EEEEECSCTTCGGGCGGG-SSEEECSC-----CCHHHHHHHH
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC-eEEEecCchHhhhcChhh-cceeeeec-----CCHHHHHHHH
Confidence            458999999875  44      33   4445556799 899998888776544333 34444321     1122222322


Q ss_pred             CCCCccEEEEccCChhHHHHHHHHccc
Q 024295          153 HGMGVDYCFECTGVPSLLSEALETTKV  179 (269)
Q Consensus       153 ~~~~~d~v~d~~g~~~~~~~~~~~l~~  179 (269)
                      .....|.++-..|+-..++-+.++.+.
T Consensus        79 ~~E~pd~il~~~GGQtalnla~~L~~~  105 (127)
T d1a9xa3          79 EKERPDAVLPTMGGQTALNCALELERQ  105 (127)
T ss_dssp             HHHCCSEEECSSSHHHHHHHHHHHHHT
T ss_pred             HHhCcCCeEEEeeeehHhHHHHHHHHc
Confidence            223678888888776555555555443

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.41  E-value=0.089  Score=39.90  Aligned_cols=35  Identities=9%  Similarity=0.104  Sum_probs=29.7

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchH
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKK  122 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~  122 (269)
                      +.||+|+ +++|.+.+..+...|+ +|+.++++.++.
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~~   38 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGA   38 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHH
Confidence            4578886 8999999999999999 999999886543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.38  E-value=0.018  Score=38.14  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=29.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      ++++|+|+|.+|.-+++.++.+|. +|..+.+.+
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~   54 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARE   54 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhccc-ceEEEeeec
Confidence            789999999999999999999999 999998753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=94.34  E-value=0.027  Score=44.13  Aligned_cols=37  Identities=19%  Similarity=0.294  Sum_probs=31.8

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      ....++|+|+|+|..|+.++..++..|. +|+++++++
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            3455799999999999999998888899 999998754

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.32  E-value=0.027  Score=43.00  Aligned_cols=33  Identities=18%  Similarity=0.331  Sum_probs=28.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      +|+|+|+|+.|++++.+++..|..+|.++++++
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            589999999999999999999965888888754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.31  E-value=0.1  Score=38.10  Aligned_cols=40  Identities=25%  Similarity=0.414  Sum_probs=34.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA  127 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~  127 (269)
                      +|.|+|.|-+|+..+..+...|. +|+++|.++++.+.++.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcc
Confidence            47899999999998888888899 99999999988887765

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.31  E-value=0.061  Score=41.48  Aligned_cols=94  Identities=15%  Similarity=0.143  Sum_probs=61.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhC-CCc---------------eeeCCCCCCCccHHH
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAF-GMT---------------DFINPDDEPNKSISE  146 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~-g~~---------------~v~~~~~~~~~~~~~  146 (269)
                      .+.++|||+|+|. |..+-.+++. +.++|.+++.+++-.+.++++ +..               .++.      .+..+
T Consensus        71 ~~p~~vLiiG~G~-G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~------~Da~~  142 (276)
T d1mjfa_          71 PKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI------GDGFE  142 (276)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE------SCHHH
T ss_pred             CCCceEEEecCCc-hHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEE------ChHHH
Confidence            4568999998765 5555666664 445899999999888888763 210               1221      33444


Q ss_pred             HHHhhhCCCCccEEE-EccCC---------hhHHHHHHHHcccCCcEEEEEc
Q 024295          147 LVKGITHGMGVDYCF-ECTGV---------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       147 ~i~~~~~~~~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .+++  + .++|+|+ |....         ...++.+-+.|+++ |.++.-+
T Consensus       143 ~l~~--~-~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~-Gv~v~q~  190 (276)
T d1mjfa_         143 FIKN--N-RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQA  190 (276)
T ss_dssp             HHHH--C-CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             HHhc--c-CCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCC-ceEEEec
Confidence            4443  3 4899886 55432         22477888999996 9887654

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=94.29  E-value=0.029  Score=41.11  Aligned_cols=87  Identities=25%  Similarity=0.252  Sum_probs=56.8

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+++|.|+|.|.+|...+++++..|. +|++.++...+..   ...    +..     .++.+.+.      ..|++.-+
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~---~~~----~~~-----~~l~~l~~------~~D~v~~~  104 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPMKGD---HPD----FDY-----VSLEDLFK------QSDVIDLH  104 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSSC---CTT----CEE-----CCHHHHHH------HCSEEEEC
T ss_pred             cceeeeeeecccccccccccccccce-eeeccCCccchhh---hcc----hhH-----HHHHHHHH------hcccceee
Confidence            46899999999999999999999999 9999997543211   000    011     22333332      35777665


Q ss_pred             cC-ChhH----HHHHHHHcccCCcEEEEEccC
Q 024295          164 TG-VPSL----LSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       164 ~g-~~~~----~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      +. .+.+    -...++.++++ ..+|.++..
T Consensus       105 ~plt~~T~~li~~~~l~~mk~~-a~lIN~aRG  135 (199)
T d1dxya1         105 VPGIEQNTHIINEAAFNLMKPG-AIVINTARP  135 (199)
T ss_dssp             CCCCGGGTTSBCHHHHHHSCTT-EEEEECSCT
T ss_pred             ecccccccccccHHHhhccCCc-eEEEecccH
Confidence            53 2221    34677788885 777777653

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.0086  Score=47.27  Aligned_cols=31  Identities=26%  Similarity=0.385  Sum_probs=27.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcC
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDK  117 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~  117 (269)
                      ++|||+|+ |-+|...+..+...|. +|+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence            68999986 9999999988888899 9999975

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.27  E-value=0.22  Score=37.21  Aligned_cols=119  Identities=18%  Similarity=0.160  Sum_probs=63.5

Q ss_pred             CCCCeEEEEcCChhHHHHHHHH-HHcCCCeEEEEcCC------c-----chHHHHHh-CCCceeeCCCCCCCccHHHHHH
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGA-RMHGAAKIIGIDKN------P-----WKKEKGKA-FGMTDFINPDDEPNKSISELVK  149 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la-~~~g~~~v~~~~~~------~-----~~~~~~~~-~g~~~v~~~~~~~~~~~~~~i~  149 (269)
                      -++.+|+|.|.|.+|..+++.+ +..|+ +|++++.+      +     +.+...++ .+.  +..+.... .-..+.+.
T Consensus        29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga-~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~--~~~~~~~~-~~~~~~~~  104 (234)
T d1b26a1          29 PKKATVAVQGFGNVGQFAALLISQELGS-KVVAVSDSRGGIYNPEGFDVEELIRYKKEHGT--VVTYPKGE-RITNEELL  104 (234)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHHCC-EEEEEEETTEEEECTTCCCHHHHHHHHHHSSC--STTCSSCE-EECHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCC-ceEEeecCCCcEEeccccchHHHHHHHHhhcc--eeccccce-eecccccc
Confidence            4689999999999999988877 56799 88777522      1     22222222 221  11111100 01112222


Q ss_pred             hhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCCccccchh-HhhhhCCceEEeeec
Q 024295          150 GITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNV-IALACGGRTLKGTTF  214 (269)
Q Consensus       150 ~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~  214 (269)
                      .    .+.|+.+-|......-....+.++..    +.++...+ +.+... ..+..|++.+.+-..
T Consensus       105 ~----~~~DI~~PcA~~~~I~~~~a~~l~~~----~I~e~AN~-p~t~~a~~~L~~rgI~~~PD~~  161 (234)
T d1b26a1         105 E----LDVDILVPAALEGAIHAGNAERIKAK----AVVEGANG-PTTPEADEILSRRGILVVPDIL  161 (234)
T ss_dssp             T----SCCSEEEECSCTTCBCHHHHTTCCCS----EEECCSSS-CBCHHHHHHHHHTTCEEECHHH
T ss_pred             c----cccceeecchhcccccHHHHHHhhhc----eEeecCCC-CCCHHHHHHHHHCCeEEechHH
Confidence            2    27899998885543445566666653    23333332 222222 234567787776543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.23  E-value=0.023  Score=42.83  Aligned_cols=33  Identities=21%  Similarity=0.390  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      +|+|+|+|..|+.++..++..|.++|+++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            589999999999999988888975799998754

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.21  E-value=0.038  Score=39.83  Aligned_cols=85  Identities=21%  Similarity=0.279  Sum_probs=58.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+++|.|+|.|.+|...+++++..|. +|++.++.+...       .....       .++.+.++      ..|+|+-+
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~~~-------~~~~~-------~~l~ell~------~sDiv~~~   99 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKEG-------PWRFT-------NSLEEALR------EARAAVCA   99 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCCCS-------SSCCB-------SCSHHHHT------TCSEEEEC
T ss_pred             cCceEEEeccccccccceeeeecccc-cccccccccccc-------ceeee-------echhhhhh------ccchhhcc
Confidence            57899999999999999999999999 999999764321       11111       22323232      57888776


Q ss_pred             cCC-hhH----HHHHHHHcccCCcEEEEEccC
Q 024295          164 TGV-PSL----LSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       164 ~g~-~~~----~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      +.. +.+    -.+.++.++++ ..+|.++..
T Consensus       100 ~pl~~~t~~li~~~~l~~mk~~-ailIN~~RG  130 (181)
T d1qp8a1         100 LPLNKHTRGLVKYQHLALMAED-AVFVNVGRA  130 (181)
T ss_dssp             CCCSTTTTTCBCHHHHTTSCTT-CEEEECSCG
T ss_pred             cccccccccccccceeeecccc-ceEEecccc
Confidence            632 211    25677888885 888887643

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.16  E-value=0.019  Score=44.41  Aligned_cols=32  Identities=22%  Similarity=0.309  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      .|+|+|+|+.|++++..++..|. +|.++++.+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGI-DNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            59999999999999999999999 999998765

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=94.15  E-value=0.28  Score=34.57  Aligned_cols=100  Identities=20%  Similarity=0.259  Sum_probs=60.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEc-CC--cchHHHHHhC----CC----------ceeeCCCC---CCCccHHH
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGID-KN--PWKKEKGKAF----GM----------TDFINPDD---EPNKSISE  146 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~-~~--~~~~~~~~~~----g~----------~~v~~~~~---~~~~~~~~  146 (269)
                      +|.|.|-|.+|.++...+...+. .++++- ..  .+...++-++    |.          ..+++.+.   ....+. +
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~-~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p-~   79 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGA-QVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKP-E   79 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC-CEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSG-G
T ss_pred             eEEEECCcHHHHHHHHHHHhCCC-cEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCCh-H
Confidence            68899999999999998887788 666664 22  3455555432    20          01111110   000111 0


Q ss_pred             HHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          147 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       147 ~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      ++ .|.+ .++|+|+||+|.-...+.+...+..| .+-|.+..+.
T Consensus        80 ~i-~W~~-~gvD~ViEcTG~f~~~~~~~~hl~~g-akkViisaP~  121 (169)
T d1dssg1          80 NI-PWSK-AGAEYIVESTGVFTTIEKASAHFKGG-AKKVIISAPS  121 (169)
T ss_dssp             GC-CHHH-HTCCEEEECSSSCCSHHHHGGGGTTT-CSEEEESSCC
T ss_pred             HC-Cccc-cCCCEEEecCceEcCHHHHHHHHhcC-CceEeecCCc
Confidence            11 1111 28999999999765667888888886 7777776554

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.14  E-value=0.11  Score=40.23  Aligned_cols=97  Identities=13%  Similarity=0.084  Sum_probs=64.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC----------ceeeCCCCCCCccHHHHHHhh
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM----------TDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~----------~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      ....++|||+|.|. |.++-.+++..+..+|++++-+++-.+.++++-.          ..++.      .|..+.+++ 
T Consensus        76 ~~~pk~vLiiGgG~-G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~------~Da~~~l~~-  147 (285)
T d2o07a1          76 HPNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV------GDGFEFMKQ-  147 (285)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHHHT-
T ss_pred             CcCcCeEEEeCCCc-hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEE------ccHHHHHhc-
Confidence            34558999998876 7777778887777799999999988888876321          11221      344444544 


Q ss_pred             hCCCCccEEE-EccCC---------hhHHHHHHHHcccCCcEEEEEc
Q 024295          152 THGMGVDYCF-ECTGV---------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       152 ~~~~~~d~v~-d~~g~---------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      +++ .+|+|+ |....         ...++.+-+.|+++ |.++.-.
T Consensus       148 ~~~-~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~  192 (285)
T d2o07a1         148 NQD-AFDVIITDSSDPMGPAESLFKESYYQLMKTALKED-GVLCCQG  192 (285)
T ss_dssp             CSS-CEEEEEEECC-----------CHHHHHHHHHEEEE-EEEEEEE
T ss_pred             CCC-CCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCC-CeEEEec
Confidence            333 899886 54321         12367778899996 9887754

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=94.07  E-value=0.041  Score=41.36  Aligned_cols=35  Identities=23%  Similarity=0.322  Sum_probs=30.7

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      +..++|+|+|+|..|++++..+...|. +|.++++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGY-SVHILARD   38 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            345689999999999999999999999 99999864

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.06  E-value=0.048  Score=42.99  Aligned_cols=32  Identities=16%  Similarity=0.186  Sum_probs=28.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      +++||+|+ |-+|..++..+...|+ +|+++++.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~-~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC-EEEEEECC
Confidence            57899986 9999999999998999 99999974

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.05  E-value=0.033  Score=43.94  Aligned_cols=35  Identities=20%  Similarity=0.253  Sum_probs=30.7

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      +.++|+|+|+|..|+.++..+...|. +|.++++++
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCC
Confidence            35789999999999999999888898 999998764

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=94.02  E-value=0.026  Score=40.25  Aligned_cols=82  Identities=16%  Similarity=0.213  Sum_probs=51.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHc-CCCeEEEE-cCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           87 SVAVLGLGTVGLGAVDGARMH-GAAKIIGI-DKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~-g~~~v~~~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      +|.|+|+|.+|...+..++.. +. .++++ ++++++.+   ..   .+..+.     +.    ....  ..+|+|+.|+
T Consensus         5 rvgiiG~G~ig~~~~~~l~~~~~~-elvav~~~~~~~~~---~~---~~~~~~-----~~----~~~~--~~~D~Vvi~t   66 (170)
T d1f06a1           5 RVAIVGYGNLGRSVEKLIAKQPDM-DLVGIFSRRATLDT---KT---PVFDVA-----DV----DKHA--DDVDVLFLCM   66 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCSSE-EEEEEEESSSCCSS---SS---CEEEGG-----GG----GGTT--TTCSEEEECS
T ss_pred             eEEEECChHHHHHHHHHHHhCCCc-EEEEEEeccccccc---cc---ccccch-----hh----hhhc--cccceEEEeC
Confidence            588999999998877777754 55 55555 44433211   11   121111     11    1111  2789999999


Q ss_pred             CChhHHHHHHHHcccCCcEEEEE
Q 024295          165 GVPSLLSEALETTKVGKGKVIVI  187 (269)
Q Consensus       165 g~~~~~~~~~~~l~~~~G~~v~~  187 (269)
                      +...+.+.+..++..| -+++..
T Consensus        67 p~~~h~~~a~~aL~aG-~~vv~~   88 (170)
T d1f06a1          67 GSATDIPEQAPKFAQF-ACTVDT   88 (170)
T ss_dssp             CTTTHHHHHHHHHTTT-SEEECC
T ss_pred             CCcccHHHHHHHHHCC-CcEEEe
Confidence            8887888999999995 666644

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.96  E-value=0.18  Score=38.72  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=29.9

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      +.++|||+|+ |-+|...+..+...|. +|++++|++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~   37 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPE   37 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCC
Confidence            3467999986 9999999998888898 999998864

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=93.95  E-value=0.25  Score=38.65  Aligned_cols=103  Identities=17%  Similarity=0.148  Sum_probs=62.7

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC--c--eeeCCCCCCCccHHHHHHhh
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM--T--DFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~--~--~v~~~~~~~~~~~~~~i~~~  151 (269)
                      ..+.+|++||-+.+|+ |..++.+ ...|++.|++++.+++..+.+++    .|.  +  .++.      .+.-+.++..
T Consensus       140 ~~~~~g~~VLdlf~~~-G~~sl~a-a~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~------~d~~~~l~~~  211 (317)
T d2b78a2         140 NGSAAGKTVLNLFSYT-AAFSVAA-AMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV------MDVFDYFKYA  211 (317)
T ss_dssp             HTTTBTCEEEEETCTT-THHHHHH-HHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE------SCHHHHHHHH
T ss_pred             HHhhCCCceeecCCCC-cHHHHHH-HhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEE------ccHHHHHHHH
Confidence            5677899999986533 2222333 34688789999999988888764    222  1  1222      3333344332


Q ss_pred             h-CCCCccEEE-EccCC--------------hhHHHHHHHHcccCCcEEEEEccCC
Q 024295          152 T-HGMGVDYCF-ECTGV--------------PSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       152 ~-~~~~~d~v~-d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      . .+..||+|+ |.-..              ...+..+++++++| |.++.+..+.
T Consensus       212 ~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pg-G~l~~~scs~  266 (317)
T d2b78a2         212 RRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN-GLIIASTNAA  266 (317)
T ss_dssp             HHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE-EEEEEEECCT
T ss_pred             HhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeCCc
Confidence            2 244899886 42210              12466788899996 9998876543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.93  E-value=0.061  Score=36.49  Aligned_cols=39  Identities=18%  Similarity=0.266  Sum_probs=34.0

Q ss_pred             cCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           80 AKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        80 ~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      ..++++++++|+|+|.+|.-++..++..|. +|..+++.+
T Consensus        30 ~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~   68 (133)
T d1q1ra2          30 RQLIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAA   68 (133)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             HhhccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeecc
Confidence            445678999999999999999999999999 999998754

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.91  E-value=0.44  Score=32.64  Aligned_cols=95  Identities=8%  Similarity=-0.021  Sum_probs=56.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHH-HH---HhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKE-KG---KAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~-~~---~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      .++++|.|.|.+|..+++.+...|. ++++++.++++.. .+   +..|...+.-..    . -.+.+++. +=..+|.+
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~----~-d~~~L~~a-~i~~a~~v   75 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNADVIPGDS----N-DSSVLKKA-GIDRCRAI   75 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCEEEESCT----T-SHHHHHHH-TTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhcCCcEEEEccC----c-chHHHHHh-ccccCCEE
Confidence            3569999999999999999999998 8888887765432 22   334554443211    1 12223332 22378899


Q ss_pred             EEccCChhH---HHHHHHHcccCCcEEEEE
Q 024295          161 FECTGVPSL---LSEALETTKVGKGKVIVI  187 (269)
Q Consensus       161 ~d~~g~~~~---~~~~~~~l~~~~G~~v~~  187 (269)
                      +-+++....   .....+.+.+. -+++.-
T Consensus        76 i~~~~~d~~n~~~~~~~r~~~~~-~~iia~  104 (153)
T d1id1a_          76 LALSDNDADNAFVVLSAKDMSSD-VKTVLA  104 (153)
T ss_dssp             EECSSCHHHHHHHHHHHHHHTSS-SCEEEE
T ss_pred             EEccccHHHHHHHHHHHHHhCCC-CceEEE
Confidence            988876432   12223344453 455443

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=93.90  E-value=0.13  Score=38.10  Aligned_cols=94  Identities=17%  Similarity=0.185  Sum_probs=59.7

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHc-CCCeEE-EEcCCcchHHHH-HhCCCc--eeeCCCCCCCccHHHHHHhhhCCCCccE
Q 024295           86 SSVAVLGLGTVGLG-AVDGARMH-GAAKII-GIDKNPWKKEKG-KAFGMT--DFINPDDEPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        86 ~~vlI~G~g~~G~~-a~~la~~~-g~~~v~-~~~~~~~~~~~~-~~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      =+|.|+|+|.+|.. .+...+.. +. +++ ++++++++.+.. ++++..  .+..+.+     +    .++.+...+|+
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d-----~----~ell~~~~iD~  103 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYGVDPRKIYDYSN-----F----DKIAKDPKIDA  103 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTTCCGGGEECSSS-----G----GGGGGCTTCCE
T ss_pred             EEEEEEcCcHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhccccccccccCc-----h----hhhccccccee
Confidence            36789999988863 44443433 66 566 456777776554 556642  2322322     2    23333448999


Q ss_pred             EEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          160 CFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       160 v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      |+-++....+...+.+++..  |+-+++..+.
T Consensus       104 V~I~tp~~~H~~~~~~al~~--gk~v~~EKPl  133 (221)
T d1h6da1         104 VYIILPNSLHAEFAIRAFKA--GKHVMCEKPM  133 (221)
T ss_dssp             EEECSCGGGHHHHHHHHHHT--TCEEEECSSC
T ss_pred             eeeccchhhhhhHHHHhhhc--chhhhcCCCc
Confidence            99999887778888888877  6777777554

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=93.90  E-value=0.027  Score=39.16  Aligned_cols=84  Identities=6%  Similarity=-0.078  Sum_probs=50.3

Q ss_pred             EEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccCChh
Q 024295           89 AVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTGVPS  168 (269)
Q Consensus        89 lI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~  168 (269)
                      -++|+|.+|.+.+..++. +...+.+..|++++.+.+.+.+.....+..+            ..  ...|+||=|+... 
T Consensus         3 gfIG~G~mg~~l~~~L~~-~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~------------~~--~~~DiVil~v~d~-   66 (153)
T d2i76a2           3 NFVGTGTLTRFFLECLKD-RYEIGYILSRSIDRARNLAEVYGGKAATLEK------------HP--ELNGVVFVIVPDR-   66 (153)
T ss_dssp             EEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCC------------CC--C---CEEECSCTT-
T ss_pred             EEEeCcHHHHHHHHHHHh-CCCEEEEEeCChhhhcchhhcccccccchhh------------hh--ccCcEEEEeccch-
Confidence            467999999988776654 3324457789999988887755432322221            11  2678999998754 


Q ss_pred             HHHHHHHHcccCCcEEEEEc
Q 024295          169 LLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       169 ~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .+...+..++..+..++.+.
T Consensus        67 ~i~~v~~~l~~~~~ivi~~s   86 (153)
T d2i76a2          67 YIKTVANHLNLGDAVLVHCS   86 (153)
T ss_dssp             THHHHHTTTCCSSCCEEECC
T ss_pred             hhhHHHhhhcccceeeeecc
Confidence            66778888875313444443

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.81  E-value=0.36  Score=34.78  Aligned_cols=108  Identities=20%  Similarity=0.199  Sum_probs=66.7

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCC-ceeeCCCCCCCccHHHHHHhhh
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGM-TDFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~-~~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      .....+++..++-.++|+ |-.+-.+++...-.+|+++|++++..+.+++    ++. -.+++.+-   .++...+....
T Consensus        17 ~~l~~~~~~~~lD~t~G~-Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f---~~~~~~~~~~~   92 (192)
T d1m6ya2          17 EFLKPEDEKIILDCTVGE-GGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY---READFLLKTLG   92 (192)
T ss_dssp             HHHCCCTTCEEEETTCTT-SHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG---GGHHHHHHHTT
T ss_pred             HhhCCCCCCEEEEecCCC-cHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHH---hhHHHHHHHcC
Confidence            445678888776555565 5555566665533399999999998888865    232 23444332   44544444443


Q ss_pred             CCCCccEEEEccCCh---------------hHHHHHHHHcccCCcEEEEEccCC
Q 024295          153 HGMGVDYCFECTGVP---------------SLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       153 ~~~~~d~v~d~~g~~---------------~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      . ..+|.|+--.|-+               ..+..+.+.++++ |+++.+..+.
T Consensus        93 ~-~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~g-G~l~ii~f~s  144 (192)
T d1m6ya2          93 I-EKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPG-GRIVVISFHS  144 (192)
T ss_dssp             C-SCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEE-EEEEEEESSH
T ss_pred             C-CCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCC-Ceeeeecccc
Confidence            3 3899775334431               2466777788996 9888776543

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=93.79  E-value=0.088  Score=41.57  Aligned_cols=72  Identities=17%  Similarity=0.117  Sum_probs=44.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC----cchHHHHHh---CCCceee-CCCCCCCccHHHHHHhhhCCCCc
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN----PWKKEKGKA---FGMTDFI-NPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~----~~~~~~~~~---~g~~~v~-~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      +|||+|+ |-+|...+..+...|. .|+++++.    .......+.   -+...+. |-.+  ...+.+.+++    .++
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~l~~~~~~----~~~   74 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGH-DVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN--EALMTEILHD----HAI   74 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTC--HHHHHHHHHH----TTC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCC--HHHHHHHHhc----cCC
Confidence            5899986 9999999999988899 89998752    222222222   2233322 2222  1223333333    379


Q ss_pred             cEEEEccC
Q 024295          158 DYCFECTG  165 (269)
Q Consensus       158 d~v~d~~g  165 (269)
                      |+||.+++
T Consensus        75 d~ViHlAa   82 (338)
T d1udca_          75 DTVIHFAG   82 (338)
T ss_dssp             SEEEECCS
T ss_pred             CEEEECCC
Confidence            99999874

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=93.74  E-value=0.22  Score=39.27  Aligned_cols=40  Identities=18%  Similarity=0.173  Sum_probs=33.6

Q ss_pred             CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 024295           83 EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKE  123 (269)
Q Consensus        83 ~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~  123 (269)
                      ++.++|||+|+ |.+|...+..+...|+ +|+++.|+..+..
T Consensus         1 ~~kktIlVtGatG~iG~~lv~~Ll~~G~-~V~~l~R~~~~~~   41 (350)
T d1xgka_           1 QQKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGLI   41 (350)
T ss_dssp             CCCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSHH
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCC-eEEEEECCcchhh
Confidence            35689999986 9999999999988999 9999998766543

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.73  E-value=0.32  Score=33.40  Aligned_cols=38  Identities=37%  Similarity=0.434  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcch
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWK  121 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~  121 (269)
                      .+.+|.|+|+|.+|...+..+...+. .+++.+|.++++
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~   43 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESK   43 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecccc
Confidence            46789999999999998888877664 479999988766

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.70  E-value=0.3  Score=34.71  Aligned_cols=85  Identities=9%  Similarity=-0.056  Sum_probs=49.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhCCC--ce--eeCCCC-CCCccHHHHHHhhhCCCCccE
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW--KKEKGKAFGM--TD--FINPDD-EPNKSISELVKGITHGMGVDY  159 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~--~~~~~~~~g~--~~--v~~~~~-~~~~~~~~~i~~~~~~~~~d~  159 (269)
                      +|.|+|+|..|.+.+..+...|. +|....|..+  ..+.+++..-  ..  .+.... ....+..+.+.      +.|+
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~ad~   74 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLE------NAEV   74 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHT------TCSE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHh------ccch
Confidence            58899999999998888887788 8988887433  3333332110  00  000000 00123333332      6899


Q ss_pred             EEEccCChhHHHHHHHHccc
Q 024295          160 CFECTGVPSLLSEALETTKV  179 (269)
Q Consensus       160 v~d~~g~~~~~~~~~~~l~~  179 (269)
                      ++.++... .+...++.+.+
T Consensus        75 Ii~avps~-~~~~~~~~l~~   93 (180)
T d1txga2          75 VLLGVSTD-GVLPVMSRILP   93 (180)
T ss_dssp             EEECSCGG-GHHHHHHHHTT
T ss_pred             hhcccchh-hhHHHHHhhcc
Confidence            99999765 55555654443

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.67  E-value=0.076  Score=40.43  Aligned_cols=31  Identities=16%  Similarity=0.295  Sum_probs=27.8

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      +|||+|+ |-+|..++..++..|+ .|++++++
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~   34 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNV-EVIPTDVQ   34 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSE-EEEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEeech
Confidence            5899986 9999999999999999 99999875

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=93.57  E-value=0.08  Score=36.93  Aligned_cols=42  Identities=21%  Similarity=0.191  Sum_probs=34.3

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKE  123 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~  123 (269)
                      .++..+|.|+|+|.+|..++.++...+...++.+|.++++.+
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~   45 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPE   45 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHH
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccch
Confidence            356789999999999998888888778668999998876544

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.42  Score=37.93  Aligned_cols=56  Identities=18%  Similarity=0.243  Sum_probs=41.7

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc---CCcchHHHHHhCCCceee
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID---KNPWKKEKGKAFGMTDFI  134 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~---~~~~~~~~~~~~g~~~v~  134 (269)
                      +...+++.+.|+...+|+.|.+.+..++.+|. +++++.   .+++|.+.++.+|++-+.
T Consensus        90 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi-~~~iv~p~~~~~~k~~~i~~~GA~vv~  148 (355)
T d1jbqa_          90 RDGTLKPGDTIIEPTSGNTGIGLALAAAVRGY-RCIIVMPEKMSSEKVDVLRALGAEIVR  148 (355)
T ss_dssp             HHTCSCTTCEEEEECSSHHHHHHHHHHHHHTC-EEEEEECSCCCHHHHHHHHHTTCEEEE
T ss_pred             HcCCcccCceEEEecccchhhHHHHHHHhccC-CeEEEeeccchHHHHHHHHhcCCeEEE
Confidence            44566777776666789999999999999999 444443   235788888889987443

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.098  Score=41.69  Aligned_cols=33  Identities=18%  Similarity=0.253  Sum_probs=27.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      +.|||+|+ |-+|..++..+...|. .|+++++..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            57889986 8899999999988899 999999853

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.49  E-value=0.055  Score=42.28  Aligned_cols=35  Identities=23%  Similarity=0.415  Sum_probs=31.1

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      ++..+|+|+|+|..|+.|+..++..|. +|++++.+
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa~   37 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEAR   37 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCC
Confidence            456789999999999999999999999 99999865

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.45  E-value=0.085  Score=40.80  Aligned_cols=32  Identities=31%  Similarity=0.492  Sum_probs=29.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID  116 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~  116 (269)
                      ++.+|+|-|.|.+|..+++++...|+ +|++++
T Consensus        35 ~gktvaIqGfGnVG~~~A~~L~e~Ga-kvv~vs   66 (293)
T d1hwxa1          35 GDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVG   66 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            67999999999999999999999999 888875

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.41  E-value=0.17  Score=39.90  Aligned_cols=31  Identities=26%  Similarity=0.216  Sum_probs=26.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcC
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDK  117 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~  117 (269)
                      +.|||+|+ |-+|...+..+...|. +|+++++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEEC
Confidence            57899986 9999999888888898 8999874

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.40  E-value=0.0077  Score=45.94  Aligned_cols=45  Identities=18%  Similarity=0.073  Sum_probs=32.6

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA  127 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~  127 (269)
                      ...++.+||-+|+|+ |..+..+++. +.++|+++|-++...+.+++
T Consensus        48 ~~~~g~~vLDlGcG~-G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~   92 (257)
T d2a14a1          48 GGLQGDTLIDIGSGP-TIYQVLAACD-SFQDITLSDFTDRNREELEK   92 (257)
T ss_dssp             TSCCEEEEEESSCTT-CCGGGTTGGG-TEEEEEEEESCHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCC-CHhHHHHhcc-ccCcEEEecCCHHHHHHHHH
Confidence            345778899999876 5444444444 44489999999988888765

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.084  Score=43.36  Aligned_cols=34  Identities=26%  Similarity=0.393  Sum_probs=30.0

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      +.+|||+|+|++|.-++..+.+.|..++..+|.+
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            4679999999999999998889999999999854

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.37  E-value=0.17  Score=40.13  Aligned_cols=73  Identities=15%  Similarity=0.220  Sum_probs=45.2

Q ss_pred             CCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCce-eeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           84 KGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTD-FINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      ++-+|||+|+ |-+|...+..+...|. +|+++++............... ..|..     +... +.+...  ++|.|+
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~D~~-----~~~~-~~~~~~--~~d~Vi   84 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEHMTEDMFCDEFHLVDLR-----VMEN-CLKVTE--GVDHVF   84 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSSSCGGGTCSEEEECCTT-----SHHH-HHHHHT--TCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCCccchhhhcccCcEEEeech-----hHHH-HHHHhh--cCCeEe
Confidence            4678999986 9999999999999999 9999986543321111112222 22322     2222 222222  789999


Q ss_pred             EccC
Q 024295          162 ECTG  165 (269)
Q Consensus       162 d~~g  165 (269)
                      .+++
T Consensus        85 h~a~   88 (363)
T d2c5aa1          85 NLAA   88 (363)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            8774

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=93.32  E-value=0.2  Score=35.31  Aligned_cols=100  Identities=17%  Similarity=0.178  Sum_probs=57.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC--cchHHHHHhC----CC---c-------eeeCCCC---CCCccHHHH
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN--PWKKEKGKAF----GM---T-------DFINPDD---EPNKSISEL  147 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~--~~~~~~~~~~----g~---~-------~v~~~~~---~~~~~~~~~  147 (269)
                      +|.|.|-|.+|.++.+++...+. .++++...  .+...++-++    |.   +       .+++...   ....+. +.
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i-~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p-~~   79 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGV-EVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDP-KE   79 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSG-GG
T ss_pred             EEEEECCcHHHHHHHHHHhcCCC-EEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCCh-HH
Confidence            57899999999999988877788 67666422  2333344332    20   0       0111100   000111 11


Q ss_pred             HHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          148 VKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       148 i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      + .|. ..++|+|+||+|.-...+.+..++..+ .+-|.+..+.
T Consensus        80 i-~W~-~~gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSAP~  120 (168)
T d2g82a1          80 I-PWA-EAGVGVVIESTGVFTDADKAKAHLEGG-AKKVIITAPA  120 (168)
T ss_dssp             C-CTG-GGTEEEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCC
T ss_pred             C-ccc-ccCCceeEeccccccchHHhhhhhccc-cceeeecccc
Confidence            1 121 238999999999765667777888875 6666665544

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.2  Score=38.55  Aligned_cols=77  Identities=18%  Similarity=0.244  Sum_probs=43.7

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCC--eEEEEcCCcchHHH----HHhC---CCc-e--eeCCCCCCCccHHHHHHhhhC
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAA--KIIGIDKNPWKKEK----GKAF---GMT-D--FINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~--~v~~~~~~~~~~~~----~~~~---g~~-~--v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      .|||+|+ +++|.+.+..+...|++  .|..+.++.++.+.    ++++   +.. .  ..|-.+  .++..+.+.+...
T Consensus         4 VvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~   81 (285)
T d1jtva_           4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRD--SKSVAAARERVTE   81 (285)
T ss_dssp             EEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTC--HHHHHHHHHTCTT
T ss_pred             EEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccc--hHhhhhhhhhccc
Confidence            3467786 89999999888888983  23344444443332    2333   221 1  223333  2333333333344


Q ss_pred             CCCccEEEEccCC
Q 024295          154 GMGVDYCFECTGV  166 (269)
Q Consensus       154 ~~~~d~v~d~~g~  166 (269)
                      + .+|+++++.|.
T Consensus        82 g-~idilvnnag~   93 (285)
T d1jtva_          82 G-RVDVLVCNAGL   93 (285)
T ss_dssp             S-CCSEEEECCCC
T ss_pred             c-chhhhhhcccc
Confidence            4 89999998865

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.18  E-value=0.27  Score=37.34  Aligned_cols=36  Identities=14%  Similarity=0.188  Sum_probs=30.8

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcch
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWK  121 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~  121 (269)
                      -++|||+|+ |-+|..++..+...|. +|++++|+...
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCCcc
Confidence            367999996 9999999999988899 99999987543

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=93.16  E-value=0.2  Score=35.17  Aligned_cols=94  Identities=18%  Similarity=0.229  Sum_probs=59.9

Q ss_pred             ccccchhhhHHHHHHhcCC-CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCC
Q 024295           64 FLSCGFTTGYGAAWKEAKV-EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPN  141 (269)
Q Consensus        64 ~~~~~~~~a~~~l~~~~~~-~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~  141 (269)
                      .+||+....+..| +..++ -.|++++|+|- ..+|.-+..++...|+ .|+......                      
T Consensus        16 ~~PcTp~aI~~lL-~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~ga-tVt~~h~~t----------------------   71 (166)
T d1b0aa1          16 LRPCTPRGIVTLL-ERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFT----------------------   71 (166)
T ss_dssp             SCCHHHHHHHHHH-HHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSC----------------------
T ss_pred             CCCchHHHHHHHH-HHcCcccccceEEEEeccccccHHHHHHHHHhhc-ccccccccc----------------------
Confidence            4454433333323 33333 46999999995 6799999999999999 777665321                      


Q ss_pred             ccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccC
Q 024295          142 KSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       142 ~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                      .+..+.++      ..|+++-++|.+..+.  -+.++++ ..++.+|..
T Consensus        72 ~~l~~~~~------~ADivI~a~G~p~~i~--~~~vk~g-~vvIDvGi~  111 (166)
T d1b0aa1          72 KNLRHHVE------NADLLIVAVGKPGFIP--GDWIKEG-AIVIDVGIN  111 (166)
T ss_dssp             SCHHHHHH------HCSEEEECSCCTTCBC--TTTSCTT-CEEEECCCE
T ss_pred             chhHHHHh------hhhHhhhhccCccccc--ccccCCC-cEEEecCce
Confidence            23333332      5688888888764332  3456775 777887754

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=92.96  E-value=0.5  Score=36.24  Aligned_cols=55  Identities=15%  Similarity=0.224  Sum_probs=40.3

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcC---CcchHHHHHhCCCcee
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDK---NPWKKEKGKAFGMTDF  133 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~---~~~~~~~~~~~g~~~v  133 (269)
                      +...+.++.+|....+|+.|++++..++.+|. +++++..   ++.+.+.++.+|+.-+
T Consensus        53 ~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~-~~~i~~p~~~~~~k~~~~~~~GA~v~  110 (292)
T d2bhsa1          53 KRGEIKPGDVLIEATSGNTGIALAMIAALKGY-RMKLLMPDNMSQERRAAMRAYGAELI  110 (292)
T ss_dssp             HTTSCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEEEESCCCHHHHHHHHHTTCEEE
T ss_pred             HhCCcCCCceeeeecccchhHHHHHHHHhcCc-ceEeeeccCchhhhhHHHHHhCCCcc
Confidence            44556667776666789999999999999999 4444432   4567778888888643

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.94  E-value=0.056  Score=40.57  Aligned_cols=33  Identities=39%  Similarity=0.484  Sum_probs=28.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW  120 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~  120 (269)
                      -|+|+|+|+.|+.++..+...|. +|+.+++++.
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~-~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            38899999999998888888899 9999997653

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=92.91  E-value=0.057  Score=40.84  Aligned_cols=34  Identities=21%  Similarity=0.256  Sum_probs=29.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcc
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPW  120 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~  120 (269)
                      ..|+|+|+|+.|++++..+...|. +|.+++++++
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~~   38 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKK   38 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            358999999999999888888898 9999998764

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.90  E-value=0.068  Score=40.40  Aligned_cols=34  Identities=24%  Similarity=0.331  Sum_probs=28.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW  120 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~  120 (269)
                      +.|||+|+ +++|.+.++.+...|+ +|+.++++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECChH
Confidence            35788986 8999999999999999 9999997653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=92.89  E-value=0.029  Score=40.49  Aligned_cols=35  Identities=26%  Similarity=0.197  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      ++..|+|+|+|+.|+.|+..+...|. +|+.+++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANL-QPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEeec
Confidence            45689999999999999999999999 888887654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.78  E-value=0.14  Score=33.65  Aligned_cols=64  Identities=8%  Similarity=0.020  Sum_probs=41.9

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCC--eEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEE
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAA--KIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFE  162 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~--~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d  162 (269)
                      .++++|+|+|.+|.=++..+..++.+  +|+.+.+.+.            ++..-   +++..+.+.+.....|+++.++
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~------------iL~~~---d~~~~~~l~~~l~~~GV~v~~~   84 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM------------ILRGF---DHTLREELTKQLTANGIQILTK   84 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS------------SSTTS---CHHHHHHHHHHHHHTTCEEEES
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch------------hhccc---chHHHHHHHHHHHhcCcEEEcC
Confidence            47899999999998888777766542  6888876431            11111   1455555555544457888876


Q ss_pred             c
Q 024295          163 C  163 (269)
Q Consensus       163 ~  163 (269)
                      +
T Consensus        85 ~   85 (117)
T d1aoga2          85 E   85 (117)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.77  E-value=0.27  Score=33.66  Aligned_cols=69  Identities=19%  Similarity=0.247  Sum_probs=44.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHHhCC-Cc------eeeCCCCCCCccHHHHHHhhhCCCC
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGKAFG-MT------DFINPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~~~g-~~------~v~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      .+|.|+|+ |.+|...+.++...+. ++++.+|.++.+.+ +.++. ++      ..+.  .   .+..+.++      +
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~-a~Dl~~~~~~~~~~~~~~--~---~~~~~~~~------~   68 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGV-AADLSHIETRATVKGYLG--P---EQLPDCLK------G   68 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHH-HHHHTTSSSSCEEEEEES--G---GGHHHHHT------T
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchh-hHHHhhhhhhcCCCeEEc--C---CChHHHhC------C
Confidence            47899996 9999999998888775 68888987654433 33321 11      1221  1   33333332      7


Q ss_pred             ccEEEEccCC
Q 024295          157 VDYCFECTGV  166 (269)
Q Consensus       157 ~d~v~d~~g~  166 (269)
                      .|+|+-+.|.
T Consensus        69 aDivVitag~   78 (144)
T d1mlda1          69 CDVVVIPAGV   78 (144)
T ss_dssp             CSEEEECCSC
T ss_pred             CCEEEECCCc
Confidence            8999998874

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=92.74  E-value=0.089  Score=36.98  Aligned_cols=36  Identities=28%  Similarity=0.379  Sum_probs=29.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCC-eEEEEcCCc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAA-KIIGIDKNP  119 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~-~v~~~~~~~  119 (269)
                      .|++|+|+|+|.+|+.+++.++..+.+ +|+.+++++
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            378999999999999988888877753 788887654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=92.64  E-value=0.12  Score=33.97  Aligned_cols=63  Identities=8%  Similarity=0.039  Sum_probs=39.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHc---CCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEE
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMH---GAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCF  161 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~---g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~  161 (269)
                      .++++|+|+|.+|.=+++++..+   |. +|..+.+++.            ++..-+   ++..+.+.+.....++++.+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~-~Vtli~~~~~------------il~~~d---~~~~~~~~~~l~~~GI~v~~   81 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRGDM------------ILRGFD---SELRKQLTEQLRANGINVRT   81 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESSSS------------SSTTSC---HHHHHHHHHHHHHTTEEEEE
T ss_pred             CCeEEEECCChHHHHHHHHhHhhccccc-ccceeccccc------------cccccc---chhhHHHHHHHhhCcEEEEc
Confidence            47899999999998877765544   66 8888876531            111111   44555555544444677776


Q ss_pred             Ec
Q 024295          162 EC  163 (269)
Q Consensus       162 d~  163 (269)
                      ++
T Consensus        82 ~~   83 (117)
T d1feca2          82 HE   83 (117)
T ss_dssp             TC
T ss_pred             CC
Confidence            54

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=92.59  E-value=0.062  Score=38.21  Aligned_cols=30  Identities=20%  Similarity=0.243  Sum_probs=27.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDK  117 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~  117 (269)
                      .|+|+|+|+.|+.|+..+...|. +|..+++
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~-~v~iie~   32 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGI-RTGLMGE   32 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCC-eEEEEEE
Confidence            48899999999999999999999 8888875

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.59  E-value=0.057  Score=37.42  Aligned_cols=33  Identities=24%  Similarity=0.346  Sum_probs=29.5

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDK  117 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~  117 (269)
                      ++++|||+|+|.+|..-+..+...|+ +|++++.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            68999999999999999999999999 8888854

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=92.52  E-value=0.52  Score=33.24  Aligned_cols=101  Identities=24%  Similarity=0.359  Sum_probs=56.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCC---eEEEEcC--CcchHHHHHhC----C---C-------ceeeCCCC---CCCccH
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAA---KIIGIDK--NPWKKEKGKAF----G---M-------TDFINPDD---EPNKSI  144 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~---~v~~~~~--~~~~~~~~~~~----g---~-------~~v~~~~~---~~~~~~  144 (269)
                      +|.|.|-|.+|.++...+...+..   .|+++..  +.+.+.++-++    |   .       ..+++...   ....+.
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p   82 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRNP   82 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSCG
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCCH
Confidence            578999999999998876543221   5666642  23344444322    1   0       11111110   000111


Q ss_pred             HHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          145 SELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       145 ~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      . ++ .| .+.++|+|+||+|.-.....+...+..| .+-|.+..+.
T Consensus        83 ~-~i-~W-~~~gvDiViEcTG~f~~~~~a~~hl~~G-akkViiSAP~  125 (173)
T d1obfo1          83 A-QL-PW-GALKVDVVLECTGFFTTKEKAGAHIKGG-AKKVIISAPG  125 (173)
T ss_dssp             G-GS-CT-TTTTCSEEEECSSSCCSHHHHHHHHHHT-CSEEEESSCC
T ss_pred             H-HC-cc-cccccceEEEecccccCHHHHHHHhccC-CcceEEecCC
Confidence            0 11 12 1348999999999754667788888886 7777776554

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.52  E-value=0.061  Score=39.50  Aligned_cols=32  Identities=31%  Similarity=0.321  Sum_probs=28.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      --|+|+|+|+.|+.++..+...|. +|+++++.
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~-kV~vie~~   35 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGF-KTTCIEKR   35 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTC-CEEEEECS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-cEEEEEec
Confidence            358999999999999999999999 89999864

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.51  E-value=0.6  Score=35.77  Aligned_cols=101  Identities=15%  Similarity=0.212  Sum_probs=61.4

Q ss_pred             hcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCCce-eeCCCCCCCccHHHHHHhhhC
Q 024295           79 EAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGMTD-FINPDDEPNKSISELVKGITH  153 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~~~-v~~~~~~~~~~~~~~i~~~~~  153 (269)
                      ....+++++||-.-+++=|. +.+++....-..|++.+.++.|.+.++    ++|... ++...+   ....+    ...
T Consensus        97 ~L~~~~g~~vLD~CAaPGgK-t~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~---~~~~~----~~~  168 (284)
T d1sqga2          97 WLAPQNGEHILDLCAAPGGK-TTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG---RYPSQ----WCG  168 (284)
T ss_dssp             HHCCCTTCEEEEESCTTCHH-HHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT---TCTHH----HHT
T ss_pred             ccCccccceeEeccCccccc-hhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccc---cccch----hcc
Confidence            45778999999885554233 334444443348999999999987764    477643 222222   22211    122


Q ss_pred             CCCccEEE-E--ccCC-------------------------hhHHHHHHHHcccCCcEEEEEc
Q 024295          154 GMGVDYCF-E--CTGV-------------------------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       154 ~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ...||.|+ |  |+|.                         ...+..+++.+++| |++|..-
T Consensus       169 ~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~g-G~lvYsT  230 (284)
T d1sqga2         169 EQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG-GTLVYAT  230 (284)
T ss_dssp             TCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE-EEEEEEE
T ss_pred             cccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCC-ceEEEee
Confidence            33799875 5  5554                         11466777789996 8887654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.50  E-value=0.12  Score=35.82  Aligned_cols=36  Identities=22%  Similarity=0.302  Sum_probs=30.6

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      -+++|+|+|+|.+|.=++..+...|++.|+.+.+.+
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            357899999999999999888888998888887653

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.50  E-value=0.41  Score=33.67  Aligned_cols=95  Identities=25%  Similarity=0.271  Sum_probs=61.1

Q ss_pred             cccccchhhhHHHHHHhcCC-CCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCC
Q 024295           63 SFLSCGFTTGYGAAWKEAKV-EKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEP  140 (269)
Q Consensus        63 a~~~~~~~~a~~~l~~~~~~-~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~  140 (269)
                      +.+||+....+. +.+..++ -.|++|+|+|. ..+|.-+..++...|+ .|+......                     
T Consensus        17 ~~~PcTp~aii~-lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga-tVt~~~~~t---------------------   73 (170)
T d1a4ia1          17 CFIPCTPKGCLE-LIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKT---------------------   73 (170)
T ss_dssp             CCCCHHHHHHHH-HHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC---------------------
T ss_pred             CCCCChHHHHHH-HHHHhCcccccceEEEEecCCccchHHHHHHHhccC-ceEEEeccc---------------------
Confidence            445555443333 3344444 37899999996 6799999999999999 888776421                     


Q ss_pred             CccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccC
Q 024295          141 NKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVG  190 (269)
Q Consensus       141 ~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~  190 (269)
                       .+..+.++      ..|+++-++|.+..+.  -+.++++ ..++.+|..
T Consensus        74 -~~l~~~~~------~aDivi~a~G~~~~i~--~~~vk~g-~iviDvgi~  113 (170)
T d1a4ia1          74 -AHLDEEVN------KGDILVVATGQPEMVK--GEWIKPG-AIVIDCGIN  113 (170)
T ss_dssp             -SSHHHHHT------TCSEEEECCCCTTCBC--GGGSCTT-CEEEECCCB
T ss_pred             -ccHHHHHh------hccchhhccccccccc--cccccCC-CeEeccCcc
Confidence             22222221      5788888888764322  3467775 777777754

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=92.49  E-value=0.053  Score=41.53  Aligned_cols=32  Identities=28%  Similarity=0.465  Sum_probs=28.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      +|+|+|+|..|+.++..+...|. +|+++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            48999999999999999999999 999998753

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.47  E-value=0.06  Score=40.99  Aligned_cols=42  Identities=14%  Similarity=0.093  Sum_probs=32.3

Q ss_pred             CCCeEEEEcC-ChhHHHHHH-HHHH--cCCCeEEEEcCCcchHHHHH
Q 024295           84 KGSSVAVLGL-GTVGLGAVD-GARM--HGAAKIIGIDKNPWKKEKGK  126 (269)
Q Consensus        84 ~~~~vlI~G~-g~~G~~a~~-la~~--~g~~~v~~~~~~~~~~~~~~  126 (269)
                      .|+.++|+|+ +++|.+.++ +++.  .|+ +|+.+++++++.+.+.
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~   50 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLK   50 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHH
Confidence            4677788886 899998765 5553  588 9999999998877653

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=92.29  E-value=0.19  Score=36.52  Aligned_cols=72  Identities=25%  Similarity=0.363  Sum_probs=47.1

Q ss_pred             HHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCC-CceeeCCCCCCCccHHHHHHhhhCCC
Q 024295           77 WKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFG-MTDFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        77 ~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      .....+ .|++||-+|+|+ |..++. +...|+++|++++.+++..+.+++.- ...++..+      +    .++ ++ 
T Consensus        42 ~~~~dl-~Gk~VLDlGcGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D------~----~~l-~~-  106 (197)
T d1ne2a_          42 YNDGNI-GGRSVIDAGTGN-GILACG-SYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVAD------V----SEI-SG-  106 (197)
T ss_dssp             HHHTSS-BTSEEEEETCTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECC------G----GGC-CC-
T ss_pred             HHcCCC-CCCEEEEeCCCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHHccccccEEEEe------h----hhc-CC-
Confidence            344555 689999999875 655554 44467779999999998888887732 22333322      1    122 33 


Q ss_pred             CccEEEEc
Q 024295          156 GVDYCFEC  163 (269)
Q Consensus       156 ~~d~v~d~  163 (269)
                      .||+|+-.
T Consensus       107 ~fD~Vi~N  114 (197)
T d1ne2a_         107 KYDTWIMN  114 (197)
T ss_dssp             CEEEEEEC
T ss_pred             cceEEEeC
Confidence            79998854

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.27  E-value=0.48  Score=37.86  Aligned_cols=31  Identities=26%  Similarity=0.309  Sum_probs=27.4

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEc
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGID  116 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~  116 (269)
                      |.+|||+|+ |-+|..++..+...|+ .|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEe
Confidence            578999986 8999999999999999 999997

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.17  E-value=0.085  Score=41.11  Aligned_cols=33  Identities=30%  Similarity=0.314  Sum_probs=29.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      -.|+|+|+|..|++++..++..|. +++++++.+
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~   40 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGR-SVHVIETAG   40 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhCCC-CEEEEEcCC
Confidence            358999999999999999999999 899998764

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=92.04  E-value=0.55  Score=30.82  Aligned_cols=39  Identities=28%  Similarity=0.341  Sum_probs=27.3

Q ss_pred             CCCeEEEEcCCh--hH------HH---HHHHHHHcCCCeEEEEcCCcchHH
Q 024295           84 KGSSVAVLGLGT--VG------LG---AVDGARMHGAAKIIGIDKNPWKKE  123 (269)
Q Consensus        84 ~~~~vlI~G~g~--~G------~~---a~~la~~~g~~~v~~~~~~~~~~~  123 (269)
                      ..++|||+|+|+  +|      ++   ++..+|..|+ +++.+..+++...
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~-~~IliN~NPeTVs   52 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY-ETIMVNCNPETVS   52 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC-EEEEECCCTTSST
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC-eEEEEecChhhhh
Confidence            357899999875  44      33   3444556698 8888888876654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.96  E-value=0.13  Score=34.11  Aligned_cols=36  Identities=19%  Similarity=0.319  Sum_probs=31.3

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      +..++++|+|+|.+|+-+++.+...|. +|+.+.+++
T Consensus        30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   65 (122)
T d1xhca2          30 ENSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGA   65 (122)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             hcCCcEEEECCcHHHHHHHHHhhcccc-eEEEEeccc
Confidence            345789999999999999999999999 999998754

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.86  E-value=0.092  Score=38.82  Aligned_cols=32  Identities=31%  Similarity=0.365  Sum_probs=28.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      -|+|+|+|..|+.++..+...|. +|.++++++
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~-~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGK-KVLHIDKQD   38 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEcCCC
Confidence            38999999999998888888898 999999864

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.85  E-value=0.83  Score=31.98  Aligned_cols=95  Identities=20%  Similarity=0.257  Sum_probs=56.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHc---CCCeEEEEcC--CcchHHHHHhC----CC----------c--------eeeCCCCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMH---GAAKIIGIDK--NPWKKEKGKAF----GM----------T--------DFINPDDE  139 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~---g~~~v~~~~~--~~~~~~~~~~~----g~----------~--------~v~~~~~~  139 (269)
                      +|.|.|-|.+|.++...+...   .. +|+++-.  +.+.+.++-++    |.          .        .+++.++ 
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i-~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~-   79 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDI-EVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD-   79 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTC-EEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS-
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCE-EEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCC-
Confidence            688999999999998877643   34 6777632  23444444332    20          0        1111111 


Q ss_pred             CCccHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          140 PNKSISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       140 ~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                       +.+.  .+.+    .++|+|+||+|.-.....+...+..| .+-|.+..+.
T Consensus        80 -p~~i--~W~~----~gvD~ViEcTG~f~t~~~~~~hl~~G-akkViiSAP~  123 (169)
T d1hdgo1          80 -PSKL--PWKD----LGVDFVIESTGVFRNREKAELHLQAG-AKKVIITAPA  123 (169)
T ss_dssp             -GGGS--CHHH----HTCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCC
T ss_pred             -hhhC--Cccc----cCCCEEEEecceeccccchhhhccCC-CceEEEeccc
Confidence             1111  0112    27999999999755667777788885 6666665554

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=91.82  E-value=0.71  Score=32.36  Aligned_cols=100  Identities=21%  Similarity=0.230  Sum_probs=58.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHc-CCCeEEEEcC---CcchHHHHHhC----CC----------ceeeCCCC---CCCccHH
Q 024295           87 SVAVLGLGTVGLGAVDGARMH-GAAKIIGIDK---NPWKKEKGKAF----GM----------TDFINPDD---EPNKSIS  145 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~~---~~~~~~~~~~~----g~----------~~v~~~~~---~~~~~~~  145 (269)
                      +|.|.|-|.+|.++...+... .. +++++-.   +.+...++-++    |.          ..+++...   ....+. 
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~-~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p-   80 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKV-DIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP-   80 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSS-EEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG-
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCc-EEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCCh-
Confidence            688999999999998877655 45 6766632   23455555432    20          01111110   000111 


Q ss_pred             HHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          146 ELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       146 ~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      +++ .|. +.++|+|+||+|.-.....+...+..| .+-|.+..+.
T Consensus        81 ~~i-~W~-~~~vDiViEcTG~f~~~~~~~~hl~~g-akkViiSaP~  123 (169)
T d1u8fo1          81 SKI-KWG-DAGAEYVVESTGVFTTMEKAGAHLQGG-AKRVIISAPS  123 (169)
T ss_dssp             GGC-CTT-TTTCCEEEECSSSCCSHHHHGGGGGGT-CSEEEESSCC
T ss_pred             hhC-Ccc-ccCCCEEEEecceeccHHHHHHHHhcC-CceEeecccc
Confidence            111 122 348999999999755667777788886 7777776554

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=91.72  E-value=0.22  Score=38.03  Aligned_cols=35  Identities=14%  Similarity=0.148  Sum_probs=26.6

Q ss_pred             EEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC-cchHH
Q 024295           88 VAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN-PWKKE  123 (269)
Q Consensus        88 vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~-~~~~~  123 (269)
                      +||+|+ +++|.+.++.+...|+ +|+..+++ +++.+
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~   41 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEAN   41 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCCHHHHH
Confidence            467786 8999999999999999 88776654 44333

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=91.63  E-value=0.089  Score=38.53  Aligned_cols=31  Identities=26%  Similarity=0.411  Sum_probs=27.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      -|+|+|+|+.|+.++..+...|. +|..+++.
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQ-KCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            37899999999999999999999 89999864

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=91.63  E-value=0.83  Score=30.13  Aligned_cols=93  Identities=12%  Similarity=0.068  Sum_probs=58.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      +.++|.|.|.+|..+++-++  +. .+++++.++++.+.++..|...+.- +    ..-.+.+++. +=..++.++-++.
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~-~i~vi~~d~~~~~~~~~~~~~~i~G-d----~~~~~~L~~a-~i~~A~~vi~~~~   71 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GS-EVFVLAEDENVRKKVLRSGANFVHG-D----PTRVSDLEKA-NVRGARAVIVNLE   71 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GG-GEEEEESCTTHHHHHHHTTCEEEES-C----TTSHHHHHHT-TCTTCSEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHc--CC-CCEEEEcchHHHHHHHhcCcccccc-c----cCCHHHHHHh-hhhcCcEEEEecc
Confidence            35888999999987776654  44 7788888999988888888654432 2    1122334443 2237888887776


Q ss_pred             ChhH---HHHHHHHcccCCcEEEEEc
Q 024295          166 VPSL---LSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       166 ~~~~---~~~~~~~l~~~~G~~v~~g  188 (269)
                      .+..   .-...+.+.+. .+++..-
T Consensus        72 ~d~~n~~~~~~~r~~~~~-~~iia~~   96 (129)
T d2fy8a1          72 SDSETIHCILGIRKIDES-VRIIAEA   96 (129)
T ss_dssp             SHHHHHHHHHHHHHHCSS-SCEEEEC
T ss_pred             chhhhHHHHHHHHHHCCC-ceEEEEE
Confidence            5432   23344455664 6555543

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.58  E-value=0.22  Score=34.33  Aligned_cols=40  Identities=10%  Similarity=0.071  Sum_probs=33.3

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKE  123 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~  123 (269)
                      |..+|-|+|+|.+|.....++...+...+..+|.++++.+
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~   41 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPH   41 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcce
Confidence            4578999999999999888888888878999998776543

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=91.52  E-value=0.63  Score=32.55  Aligned_cols=73  Identities=15%  Similarity=0.108  Sum_probs=42.9

Q ss_pred             CCCeEEEEcCChhHHH--HHHHHHHcC---CCeEEEEcCCcchHHHH----H----hCCCc-eeeCCCCCCCccHHHHHH
Q 024295           84 KGSSVAVLGLGTVGLG--AVDGARMHG---AAKIIGIDKNPWKKEKG----K----AFGMT-DFINPDDEPNKSISELVK  149 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~--a~~la~~~g---~~~v~~~~~~~~~~~~~----~----~~g~~-~v~~~~~~~~~~~~~~i~  149 (269)
                      +.-+|.|+|+|++|..  ...+++...   .+.++.+|.++++.+..    +    ..+.. .+...     .+..+.+.
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~eal~   76 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT-----TDPEEAFT   76 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE-----SCHHHHHS
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec-----CChhhccC
Confidence            4557899998877643  344444332   23899999998887632    1    22332 22211     23333332


Q ss_pred             hhhCCCCccEEEEccCCh
Q 024295          150 GITHGMGVDYCFECTGVP  167 (269)
Q Consensus       150 ~~~~~~~~d~v~d~~g~~  167 (269)
                            +.|+|+.++|.+
T Consensus        77 ------~AD~Vvitag~~   88 (167)
T d1u8xx1          77 ------DVDFVMAHIRVG   88 (167)
T ss_dssp             ------SCSEEEECCCTT
T ss_pred             ------CCCEEEECCCcC
Confidence                  899999999753

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=0.092  Score=40.05  Aligned_cols=45  Identities=16%  Similarity=0.039  Sum_probs=31.9

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA  127 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~  127 (269)
                      +..++.++|-+|+|+ |...+..+...+. +|+++|-++...+.+++
T Consensus        51 g~~~g~~vLDiGcG~-g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~   95 (263)
T d2g72a1          51 GEVSGRTLIDIGSGP-TVYQLLSACSHFE-DITMTDFLEVNRQELGR   95 (263)
T ss_dssp             SCSCCSEEEEETCTT-CCGGGTTGGGGCS-EEEEECSCHHHHHHHHH
T ss_pred             CCCCCcEEEEeccCC-CHHHHHHhcccCC-eEEEEeCCHHHHHHHHH
Confidence            445689999999986 4433333333344 89999999988888865

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=91.37  E-value=0.11  Score=39.55  Aligned_cols=100  Identities=13%  Similarity=0.058  Sum_probs=62.2

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHH----hCCC-ce--eeCCCCCCCccHHHHH
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGK----AFGM-TD--FINPDDEPNKSISELV  148 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~----~~g~-~~--v~~~~~~~~~~~~~~i  148 (269)
                      +.....++...+||-+|+|. |..+..+++.+---+++++|. ++..+.++    +.|. +.  +...+      +.   
T Consensus        73 ~~~~~d~~~~~~vlDvG~G~-G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d------~~---  141 (256)
T d1qzza2          73 PADAYDWSAVRHVLDVGGGN-GGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGD------FF---  141 (256)
T ss_dssp             HHHTSCCTTCCEEEEETCTT-SHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECC------TT---
T ss_pred             HHhcCCCccCCEEEEECCCC-CHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeee------cc---
Confidence            34455677778999999886 899999999873338999985 44444443    3342 21  11111      10   


Q ss_pred             HhhhCCCCccEEEEcc-----CCh---hHHHHHHHHcccCCcEEEEEcc
Q 024295          149 KGITHGMGVDYCFECT-----GVP---SLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       149 ~~~~~~~~~d~v~d~~-----g~~---~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                       +-.+. ++|+++-.-     +.+   ..++.+.+.+++| |+++.+..
T Consensus       142 -~~~p~-~~D~v~~~~vLh~~~d~~~~~lL~~i~~~Lkpg-G~llI~d~  187 (256)
T d1qzza2         142 -KPLPV-TADVVLLSFVLLNWSDEDALTILRGCVRALEPG-GRLLVLDR  187 (256)
T ss_dssp             -SCCSC-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             -ccccc-cchhhhccccccccCcHHHHHHHHHHHhhcCCc-ceeEEEEe
Confidence             11122 689886321     111   2477888999996 99988764

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=91.37  E-value=0.16  Score=38.47  Aligned_cols=33  Identities=33%  Similarity=0.491  Sum_probs=29.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID  116 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~  116 (269)
                      -++.+|+|-|.|.+|..+++++...|+ +|+++.
T Consensus        34 l~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavs   66 (255)
T d1bgva1          34 LVGKTVALAGFGNVAWGAAKKLAELGA-KAVTLS   66 (255)
T ss_dssp             STTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEe
Confidence            478999999999999999999999999 887774

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.33  E-value=0.11  Score=38.36  Aligned_cols=32  Identities=31%  Similarity=0.362  Sum_probs=28.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      -|+|+|+|+.|+.|+..+...|. +|..+++.+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~-~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGL-KVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            47899999999999999999999 999998654

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.33  E-value=0.64  Score=34.62  Aligned_cols=33  Identities=24%  Similarity=0.428  Sum_probs=27.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHH-HcCCCeEEEEc
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGAR-MHGAAKIIGID  116 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~-~~g~~~v~~~~  116 (269)
                      -++.+|+|.|.|.+|..+++++. ..|+ +|+++.
T Consensus        30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~-kvv~vs   63 (239)
T d1gtma1          30 LKGKTIAIQGYGNAGYYLAKIMSEDFGM-KVVAVS   63 (239)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCc-ceeecc
Confidence            37899999999999999998775 5688 777765

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.20  E-value=0.18  Score=36.24  Aligned_cols=88  Identities=18%  Similarity=0.175  Sum_probs=58.1

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      .+++|.|+|.|.+|...+++++..|. +|+..++......       ......     .++.+.++      ..|++.-+
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~-------~~~~~~-----~~l~ell~------~sDii~i~  103 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIENKLPL-------GNATQV-----QHLSDLLN------MSDVVSLH  103 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCCCC-------TTCEEC-----SCHHHHHH------HCSEEEEC
T ss_pred             cceEEEEeecccchhhhhhhcccccc-eEeeccccccchh-------hhhhhh-----hhHHHHHh------hccceeec
Confidence            57899999999999999999999999 9999986532110       111111     22333333      45777766


Q ss_pred             cCC-hh----HHHHHHHHcccCCcEEEEEccCC
Q 024295          164 TGV-PS----LLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       164 ~g~-~~----~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      ..- +.    .-.+.++.++++ ..+|.++...
T Consensus       104 ~plt~~T~~li~~~~l~~mk~~-a~lIN~aRG~  135 (188)
T d1sc6a1         104 VPENPSTKNMMGAKEISLMKPG-SLLINASRGT  135 (188)
T ss_dssp             CCSSTTTTTCBCHHHHHHSCTT-EEEEECSCSS
T ss_pred             ccCCcchhhhccHHHHhhCCCC-CEEEEcCcHH
Confidence            542 11    135677888885 8888876543

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.18  E-value=0.11  Score=38.20  Aligned_cols=32  Identities=19%  Similarity=0.244  Sum_probs=28.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      -.++|+|+|+.|+.++..++.+|. +|..+++.
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            348899999999999999999999 99999864

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.16  E-value=0.12  Score=37.78  Aligned_cols=31  Identities=29%  Similarity=0.323  Sum_probs=27.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      -|+|+|+|+.|+.++..+...|. +|..+++.
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~-kV~vIEk~   35 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKG   35 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-EEEEEecC
Confidence            37889999999999999999999 89988754

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.15  E-value=0.42  Score=34.75  Aligned_cols=95  Identities=14%  Similarity=0.103  Sum_probs=62.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHH----HhCCCc--eeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKG----KAFGMT--DFINPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~----~~~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      ...||-+|+|. |..++.+|+...-..+++++.++.....+    ++.+..  .++..+.   .++    .+..+...+|
T Consensus        32 ~plvLdIGcG~-G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da---~~l----~~~~~~~~~~  103 (204)
T d1yzha1          32 NPIHVEVGSGK-GAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG---SDL----TDYFEDGEID  103 (204)
T ss_dssp             CCEEEEESCTT-SHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCS---SCG----GGTSCTTCCS
T ss_pred             CCeEEEEeccC-CHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCH---HHH----hhhccCCcee
Confidence            35678889987 99999999998544999999988766654    334433  2333221   222    2223334788


Q ss_pred             EEEEccCC--------------hhHHHHHHHHcccCCcEEEEEc
Q 024295          159 YCFECTGV--------------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       159 ~v~d~~g~--------------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .|+-....              +..++.+.+.|++| |.+....
T Consensus       104 ~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~Lkpg-G~l~i~T  146 (204)
T d1yzha1         104 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPEN-GEIHFKT  146 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             hhcccccccccchhhhhhhhhHHHHHHHHHHhCCCC-cEEEEEE
Confidence            77654332              34678889999997 9987654

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.10  E-value=0.1  Score=40.54  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=28.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      .|+|+|+|..|+.++..+...|. +|.++++++
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEECCC
Confidence            48999999999999999888898 999998754

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.09  E-value=0.12  Score=38.00  Aligned_cols=32  Identities=25%  Similarity=0.294  Sum_probs=27.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      -|+|+|+|+.|+.|+..+...|. +|+.+++.+
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~-kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGF-NTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEEecC
Confidence            47899999999999888888999 899998643

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.95  E-value=0.15  Score=39.66  Aligned_cols=43  Identities=19%  Similarity=0.203  Sum_probs=33.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcc--hHHHHHhCC
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPW--KKEKGKAFG  129 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~--~~~~~~~~g  129 (269)
                      ++|||+|+ |-+|..++..+...|+ +|+++++...  ..+.++.++
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~~~~~~~~~l~~~~   46 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELG   46 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcccHHHHHHhc
Confidence            57999986 9999999998888899 9999987542  334455544

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=90.89  E-value=0.4  Score=33.58  Aligned_cols=97  Identities=20%  Similarity=0.198  Sum_probs=57.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCc--chHHHHHhC----C---C-------ceeeCCC------CCCCcc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNP--WKKEKGKAF----G---M-------TDFINPD------DEPNKS  143 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~--~~~~~~~~~----g---~-------~~v~~~~------~~~~~~  143 (269)
                      +|.|.|-|.+|.++...+.... . +++++....  +.+.++-++    |   .       ..+++..      +.++.+
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i-~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~~   81 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDI-EIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPAN   81 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSE-EEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCe-EEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChHH
Confidence            5789999999999998877653 4 666665332  333333222    2   0       1111111      101111


Q ss_pred             HHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          144 ISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       144 ~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      +  .+.+    .++|+|+||+|.-...+.+..++..| .+-|.+..+.
T Consensus        82 i--~W~~----~gvDiViEcTG~f~t~~~~~~hl~~g-akkViiSaP~  122 (166)
T d1gado1          82 L--KWDE----VGVDVVAEATGLFLTDETARKHITAG-AKKVVMTGPS  122 (166)
T ss_dssp             G--CHHH----HTCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSCC
T ss_pred             C--Cccc----cCCCEEEEccccccCHHHHHHHhcCC-CceEEeeccc
Confidence            1  0112    28999999999765667787888885 7666776554

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=90.82  E-value=0.14  Score=39.46  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=30.4

Q ss_pred             CCCeEEEEcC-C--hhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           84 KGSSVAVLGL-G--TVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        84 ~~~~vlI~G~-g--~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      +|+++||+|+ |  ++|.+.++.+...|+ +|+..++++
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~~   44 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVP   44 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCch
Confidence            6899999996 4  799999999999999 998888764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.76  E-value=0.41  Score=31.92  Aligned_cols=62  Identities=19%  Similarity=0.178  Sum_probs=47.8

Q ss_pred             HHHhcCCCCCCeEEEE-cCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCC
Q 024295           76 AWKEAKVEKGSSVAVL-GLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPD  137 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~-G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~  137 (269)
                      ....+++...+.++.. ..-..-..+.++++.+|..++++...+++..+.++++|++.++++.
T Consensus        57 ~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~p~  119 (132)
T d1lssa_          57 TLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPE  119 (132)
T ss_dssp             HHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHH
T ss_pred             hhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEECHH
Confidence            3466777776766654 3334556778889999988899999888899999999999998753

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=90.60  E-value=0.95  Score=31.76  Aligned_cols=101  Identities=18%  Similarity=0.199  Sum_probs=54.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCC--eEEEEcCC--cchHHHHHhC----C---C-------ce-eeCCCC---CCCccH
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAA--KIIGIDKN--PWKKEKGKAF----G---M-------TD-FINPDD---EPNKSI  144 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~--~v~~~~~~--~~~~~~~~~~----g---~-------~~-v~~~~~---~~~~~~  144 (269)
                      +|.|.|-|.+|.++...+....-.  .|+++-..  .+...++-++    |   .       .. ++|...   ....+.
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~~p   81 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNP   81 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCSCG
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCCCh
Confidence            578999999999999876654321  56665322  2333333222    1   0       11 112110   000111


Q ss_pred             HHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          145 SELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       145 ~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      . .+ .|.+ .++|+|+||+|.-.....+...+..| .+-|.+..+.
T Consensus        82 ~-~i-~W~~-~gvDiViEcTG~f~~~~~~~~hl~~G-akkViiSAP~  124 (172)
T d1rm4a1          82 V-NL-PWGD-MGIDLVIEGTGVFVDRDGAGKHLQAG-AKKVLITAPG  124 (172)
T ss_dssp             G-GS-CHHH-HTCCEEEECSSSCCBHHHHHHHHHTT-CSCEEESSCC
T ss_pred             H-HC-Chhh-cCCCEEEecCceEccHHHHHHHHhcC-CceEEeeccc
Confidence            1 11 1111 28999999999754567777788875 6556665544

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.56  E-value=0.94  Score=31.60  Aligned_cols=97  Identities=19%  Similarity=0.157  Sum_probs=57.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHc-CCCeEEEEc-C--CcchHHHHHhC----C---C-------ceeeCCC------CCCCc
Q 024295           87 SVAVLGLGTVGLGAVDGARMH-GAAKIIGID-K--NPWKKEKGKAF----G---M-------TDFINPD------DEPNK  142 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~-~--~~~~~~~~~~~----g---~-------~~v~~~~------~~~~~  142 (269)
                      +|.|.|-|.+|.++...+... .. .++++- .  +.+.+.++-++    |   .       ..+++..      +.++.
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~-~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p~   80 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDI-EVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDPS   80 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSE-EEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSGG
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCc-EEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCChH
Confidence            588999999999998887654 44 666663 2  23555655433    1   0       0111111      10111


Q ss_pred             cHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          143 SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       143 ~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      +.  .+.+    .++|+|+||+|.-...+.+...+..| .+-|.+..+.
T Consensus        81 ~i--~W~~----~gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSAP~  122 (166)
T d2b4ro1          81 QI--PWGK----CQVDVVCESTGVFLTKELASSHLKGG-AKKVIMSAPP  122 (166)
T ss_dssp             GC--CHHH----HTCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSCC
T ss_pred             Hc--cccc----cCCCEEEEecccccchhhhhhhhccC-CCEEEEeccc
Confidence            11  0112    28999999999755667777888875 7666666554

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.47  E-value=0.22  Score=35.60  Aligned_cols=94  Identities=18%  Similarity=0.109  Sum_probs=54.8

Q ss_pred             CCCCCCeEEEE--cCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccHHHHHHhh
Q 024295           81 KVEKGSSVAVL--GLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        81 ~~~~~~~vlI~--G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~~~  151 (269)
                      ...++.+||-+  |+|++|+-    |...|+++|+.++.+++..+.+++    ++..   .++.      .+..+.+..+
T Consensus        38 ~~~~~~~vLDlfaGsG~~g~e----a~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~------~D~~~~l~~~  107 (182)
T d2fhpa1          38 PYFDGGMALDLYSGSGGLAIE----AVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRK------MDANRALEQF  107 (182)
T ss_dssp             SCCSSCEEEETTCTTCHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE------SCHHHHHHHH
T ss_pred             HhcCCCEEEEcccccccccce----eeecchhHHHHHHHHHHHHHHHHHHhhhhhccccccccc------ccchhhhhhh
Confidence            34578899988  44666653    334788899999999888877754    3432   2332      3344444443


Q ss_pred             h-CCCCccEEEEccC--C---hhHHHHHHH--HcccCCcEEE
Q 024295          152 T-HGMGVDYCFECTG--V---PSLLSEALE--TTKVGKGKVI  185 (269)
Q Consensus       152 ~-~~~~~d~v~d~~g--~---~~~~~~~~~--~l~~~~G~~v  185 (269)
                      . .+..||+||=--.  .   ...+..+.+  .++++ |.++
T Consensus       108 ~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~-giIi  148 (182)
T d2fhpa1         108 YEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNE-AVIV  148 (182)
T ss_dssp             HHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEE-EEEE
T ss_pred             cccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCC-EEEE
Confidence            2 3448999973221  1   123344333  36774 7654

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=90.37  E-value=0.12  Score=40.59  Aligned_cols=32  Identities=31%  Similarity=0.343  Sum_probs=25.8

Q ss_pred             eEEEEcCChhHHHHHHHHH-----HcCCCeEEEEcCCc
Q 024295           87 SVAVLGLGTVGLGAVDGAR-----MHGAAKIIGIDKNP  119 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~-----~~g~~~v~~~~~~~  119 (269)
                      -|+|+|+|+.|++++.++.     ..|. +|+++++.+
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRS   45 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCCC
Confidence            4899999999998777663     4688 899998753

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.34  E-value=0.15  Score=37.35  Aligned_cols=30  Identities=33%  Similarity=0.306  Sum_probs=27.0

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           88 VAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        88 vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      |+|+|+|+.|+.|+..+...|. +|..+++.
T Consensus         6 viIIGgGpAGl~aA~~aar~G~-~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            7899999999999999999999 89999854

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.26  E-value=0.16  Score=37.07  Aligned_cols=30  Identities=27%  Similarity=0.376  Sum_probs=27.0

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           88 VAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        88 vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      ++|+|+|+.|+.++..+...|. +|.++++.
T Consensus         6 viIIG~GpaG~~aA~~aar~G~-kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGA-RAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            7889999999999999999999 89998753

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=90.22  E-value=0.88  Score=35.16  Aligned_cols=100  Identities=15%  Similarity=0.137  Sum_probs=62.6

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcC--CcchHHHHHhCCCceeeCCCC-----------------
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDK--NPWKKEKGKAFGMTDFINPDD-----------------  138 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~--~~~~~~~~~~~g~~~v~~~~~-----------------  138 (269)
                      +...+.++++|+...+|+.|.++...++..|.+.++.+..  ++.+.+.++.+|+..+.....                 
T Consensus        54 ~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~~  133 (310)
T d1y7la1          54 KDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASD  133 (310)
T ss_dssp             HTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHC
T ss_pred             HcCCCCCCceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHHHHHHHhh
Confidence            4455677777666678999999999999999954444433  346666777788765432111                 


Q ss_pred             ---------C-CCc-------cHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcc
Q 024295          139 ---------E-PNK-------SISELVKGITHGMGVDYCFECTGVPSLLSEALETTK  178 (269)
Q Consensus       139 ---------~-~~~-------~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~  178 (269)
                               . .+.       ....++.+..++ .+|.++-++|+...+.-+.+.++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~~~~~-~~d~vv~~~G~Gg~~~G~~~~lk  189 (310)
T d1y7la1         134 PSRYVMLKQFENPANPQIHRETTGPEIWKDTDG-KVDVVVAGVGTGGSITGISRAIK  189 (310)
T ss_dssp             TTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTT-CEEEEEEECSSSHHHHHHHHHHH
T ss_pred             cCccccCCCCcchhhHHHhhhhHHHHHHHhcCC-CCCEEEecCcCCcchhHHHHHHH
Confidence                     0 011       122233343444 68999999987666666655554

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.19  E-value=0.15  Score=36.60  Aligned_cols=32  Identities=16%  Similarity=0.078  Sum_probs=27.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      ..|+|+|+|+.|+.++..+...|. +++.+++.
T Consensus         6 ~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie~~   37 (192)
T d1vdca1           6 TRLCIVGSGPAAHTAAIYAARAEL-KPLLFEGW   37 (192)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CCEEECCS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-cEEEEEee
Confidence            579999999999998888888899 78888743

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.12  E-value=0.22  Score=35.88  Aligned_cols=39  Identities=28%  Similarity=0.202  Sum_probs=32.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA  127 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~  127 (269)
                      +|.|+|.|-+|+..+.++ +.|. +|+++|.++++.+.++.
T Consensus         2 kI~ViGlG~vGl~~a~~~-a~g~-~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLL-SLQN-EVTIVDILPSKVDKINN   40 (196)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTS-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCChhHHHHHHHH-HCCC-cEEEEECCHHHHHHHhh
Confidence            478899999999877655 4698 99999999998887764

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.10  E-value=2.2  Score=30.09  Aligned_cols=104  Identities=22%  Similarity=0.319  Sum_probs=65.0

Q ss_pred             hcCCCCCCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCC--ceeeCCCCCCCccHHHHHHhhhCCC
Q 024295           79 EAKVEKGSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGM--TDFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        79 ~~~~~~~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      ...++++..++ -++ |+=|. +..+++. +. +|+++|+.++..+.+++.-.  -.+++..-   .++.+.+..... .
T Consensus        13 ~l~~~~g~~~v-D~T~G~GGh-s~~iL~~-~~-~viaiD~D~~ai~~a~~~~~~~~~~~~~~f---~~~~~~l~~~~~-~   84 (182)
T d1wg8a2          13 LLAVRPGGVYV-DATLGGAGH-ARGILER-GG-RVIGLDQDPEAVARAKGLHLPGLTVVQGNF---RHLKRHLAALGV-E   84 (182)
T ss_dssp             HHTCCTTCEEE-ETTCTTSHH-HHHHHHT-TC-EEEEEESCHHHHHHHHHTCCTTEEEEESCG---GGHHHHHHHTTC-S
T ss_pred             hcCCCCCCEEE-EeCCCCcHH-HHHHhcc-cC-cEEEEhhhhhHHHHHhhccccceeEeehHH---HHHHHHHHHcCC-C
Confidence            34567788654 343 55344 4455554 45 89999999998888877432  23444443   566665555433 3


Q ss_pred             CccEEEEccCChh---------------HHHHHHHHcccCCcEEEEEccCC
Q 024295          156 GVDYCFECTGVPS---------------LLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       156 ~~d~v~d~~g~~~---------------~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      .+|.|+=-.|-+.               .+....+.++++ |+++....+.
T Consensus        85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~g-g~~~ii~fhs  134 (182)
T d1wg8a2          85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPG-GRLVVIAFHS  134 (182)
T ss_dssp             CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEE-EEEEEEECSH
T ss_pred             ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCC-CeEEEEeccc
Confidence            7897753344321               367778889996 9988776554

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.06  E-value=0.35  Score=35.03  Aligned_cols=68  Identities=21%  Similarity=0.336  Sum_probs=41.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCC-eEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAA-KIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~-~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      ++|||+|+ |-+|...+..+...|.. +|++..|++...       ...+ ....   .++.+.... ..+ ..|.|+.+
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~-------~~~~-~~~~---~d~~~~~~~-~~~-~~d~vi~~   69 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE-------HPRL-DNPV---GPLAELLPQ-LDG-SIDTAFCC   69 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC-------CTTE-ECCB---SCHHHHGGG-CCS-CCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh-------cccc-cccc---cchhhhhhc-ccc-chheeeee
Confidence            68999986 99999999888877752 666666543110       0011 1111   334333322 223 78999999


Q ss_pred             cCC
Q 024295          164 TGV  166 (269)
Q Consensus       164 ~g~  166 (269)
                      +|.
T Consensus        70 ~g~   72 (212)
T d2a35a1          70 LGT   72 (212)
T ss_dssp             CCC
T ss_pred             eee
Confidence            875

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=89.95  E-value=0.17  Score=38.27  Aligned_cols=32  Identities=13%  Similarity=0.126  Sum_probs=27.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      -|+|+|+|.+|++++..+...|. +|+++++.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENK-NTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            48999999999998777777898 999999753

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.91  E-value=0.19  Score=37.02  Aligned_cols=33  Identities=18%  Similarity=0.213  Sum_probs=26.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHH--cCCCeEEEEcCCc
Q 024295           86 SSVAVLGLGTVGLGAVDGARM--HGAAKIIGIDKNP  119 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~--~g~~~v~~~~~~~  119 (269)
                      .+|.|+|+|+.|+.|+..++.  .|+ +|+++++.+
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~-~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQL   36 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCC
Confidence            379999999999998876554  367 899998764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.85  E-value=0.18  Score=39.55  Aligned_cols=34  Identities=18%  Similarity=0.329  Sum_probs=26.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCc
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNP  119 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~  119 (269)
                      ++|+|+|+|+.|++++..++..|. .+|++.++++
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            689999999999988766554442 2899998764

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=89.84  E-value=0.51  Score=34.13  Aligned_cols=43  Identities=26%  Similarity=0.301  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA  127 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~  127 (269)
                      .+|++||-+|+|. |..++.++ ..|+.+|++++.+++..+.+++
T Consensus        45 l~g~~vLDlg~Gt-G~l~i~a~-~~g~~~v~~vdi~~~~~~~a~~   87 (201)
T d1wy7a1          45 IEGKVVADLGAGT-GVLSYGAL-LLGAKEVICVEVDKEAVDVLIE   87 (201)
T ss_dssp             STTCEEEEETCTT-CHHHHHHH-HTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEECcCcc-hHHHHHHH-HcCCCEEEEEcCcHHHHHHHHH
Confidence            4688999998764 55555544 4677699999999988887765

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=89.83  E-value=1.5  Score=30.66  Aligned_cols=74  Identities=9%  Similarity=0.189  Sum_probs=43.2

Q ss_pred             CCCeEEEEcCChhHHHH---HHHHHHc--CCCeEEEEcCCcchHHHH--------HhCCCceeeCCCCCCCccHHHHHHh
Q 024295           84 KGSSVAVLGLGTVGLGA---VDGARMH--GAAKIIGIDKNPWKKEKG--------KAFGMTDFINPDDEPNKSISELVKG  150 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a---~~la~~~--g~~~v~~~~~~~~~~~~~--------~~~g~~~v~~~~~~~~~~~~~~i~~  150 (269)
                      |+=+|.|+|+|.+|...   ..+++..  ....++-+|.++++.+..        ..++...-+...    .+..+.+. 
T Consensus         1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~----td~~eaL~-   75 (171)
T d1obba1           1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT----MNLDDVII-   75 (171)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE----SCHHHHHT-
T ss_pred             CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe----CChhhccc-
Confidence            34578999999888653   2234322  224899999998876642        223332222111    23333331 


Q ss_pred             hhCCCCccEEEEccCCh
Q 024295          151 ITHGMGVDYCFECTGVP  167 (269)
Q Consensus       151 ~~~~~~~d~v~d~~g~~  167 (269)
                           +.|+|+.+++.+
T Consensus        76 -----dad~Vv~~~~~g   87 (171)
T d1obba1          76 -----DADFVINTAMVG   87 (171)
T ss_dssp             -----TCSEEEECCCTT
T ss_pred             -----CCCeEeeecccc
Confidence                 789999888643

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.83  E-value=2.1  Score=29.61  Aligned_cols=95  Identities=13%  Similarity=0.124  Sum_probs=49.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC--CC-eEEEEcCCcchH------------HHHHhCCCceeeCCCCCCCccHHHHHHhh
Q 024295           87 SVAVLGLGTVGLGAVDGARMHG--AA-KIIGIDKNPWKK------------EKGKAFGMTDFINPDDEPNKSISELVKGI  151 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g--~~-~v~~~~~~~~~~------------~~~~~~g~~~v~~~~~~~~~~~~~~i~~~  151 (269)
                      +|.++|.|.+|...+++.....  .+ ++.++..+....            .+-+.+...   ...   +..........
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~   79 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAAS---TTK---TLPLDDLIAHL   79 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTC---CCB---CCCHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhc---ccc---cccHHHHHHHh
Confidence            5788899999999988776532  22 555554321110            000000000   000   01111112122


Q ss_pred             hCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEc
Q 024295          152 THGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       152 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .+....++++|++++........+.+..| =++|+..
T Consensus        80 ~~~~~~~vivd~t~~~~~~~~~~~aL~~G-~hVVTAN  115 (168)
T d1ebfa1          80 KTSPKPVILVDNTSSAYIAGFYTKFVENG-ISIATPN  115 (168)
T ss_dssp             TTCSSCEEEEECSCCHHHHTTHHHHHHTT-CEEECCC
T ss_pred             ccCCCceEEEEecCChHHHHHHHHHHHcC-CeEEecC
Confidence            33446789999999876666666677774 5665554

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.81  E-value=0.16  Score=39.76  Aligned_cols=31  Identities=23%  Similarity=0.371  Sum_probs=27.5

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           88 VAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        88 vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      |+|+|+|..|++++..++..|. +|+++++++
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            7899999999999998888999 999998643

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=89.76  E-value=0.68  Score=33.66  Aligned_cols=94  Identities=11%  Similarity=0.082  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      ++++++-+|+|+ |.=.+-+|-..--.+++.++++..|.+++++    ++.+  .+++.+.   .+       ......|
T Consensus        65 ~~~~ilDiGsGa-G~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~---E~-------~~~~~~f  133 (207)
T d1jsxa_          65 QGERFIDVGTGP-GLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRV---EE-------FPSEPPF  133 (207)
T ss_dssp             CSSEEEEETCTT-TTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCT---TT-------SCCCSCE
T ss_pred             cCCceeeeeccC-CceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccch---hh-------hcccccc
Confidence            567899998755 5545555555433499999999999988864    6643  4555443   22       2223378


Q ss_pred             cEEE-EccCCh-hHHHHHHHHcccCCcEEEEEcc
Q 024295          158 DYCF-ECTGVP-SLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       158 d~v~-d~~g~~-~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      |+|. -+++.. ..+..+...++++ |+++.+-.
T Consensus       134 D~V~sRA~~~~~~ll~~~~~~l~~~-g~~~~~KG  166 (207)
T d1jsxa_         134 DGVISRAFASLNDMVSWCHHLPGEQ-GRFYALKG  166 (207)
T ss_dssp             EEEECSCSSSHHHHHHHHTTSEEEE-EEEEEEES
T ss_pred             ceehhhhhcCHHHHHHHHHHhcCCC-cEEEEECC
Confidence            8877 455443 2455666678885 99888843

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=89.76  E-value=0.17  Score=35.75  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=26.4

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCC-eEEEEc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAA-KIIGID  116 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~-~v~~~~  116 (269)
                      .+++|+|+|+|.+|.-++..++.+|.+ .|+...
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~   35 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVG   35 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEec
Confidence            468999999999999999999999983 344333

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=89.73  E-value=1.3  Score=29.91  Aligned_cols=36  Identities=31%  Similarity=0.337  Sum_probs=27.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcch
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWK  121 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~  121 (269)
                      .+|.|+|+|.+|...+..+...+. ..++.+|.++++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~   38 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEK   38 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCc
Confidence            468899999999998877777664 479999987754

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.57  E-value=0.16  Score=37.51  Aligned_cols=31  Identities=26%  Similarity=0.380  Sum_probs=27.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      -|+|+|+|+.|+.|+..+...|. +|..++..
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~-kV~viE~~   35 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDK-KVMVLDFV   35 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCC-CEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            47899999999999999999999 89999854

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=89.55  E-value=0.19  Score=38.66  Aligned_cols=32  Identities=25%  Similarity=0.439  Sum_probs=26.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      .|+|+|+|.+|++++.-+...|.++|++++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            59999999999987766666787579999875

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=89.55  E-value=0.77  Score=35.69  Aligned_cols=102  Identities=22%  Similarity=0.287  Sum_probs=62.4

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHHHH----hCCCceeeCCCCCCCccHHHHHHhhh
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEKGK----AFGMTDFINPDDEPNKSISELVKGIT  152 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~~~----~~g~~~v~~~~~~~~~~~~~~i~~~~  152 (269)
                      .....++|++||-.-+++ |.=+.+++..++. ..+++.+.++.|...++    ++|...++....   +...  + ...
T Consensus       110 ~~l~~~~g~~vlD~CAap-GgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~---d~~~--~-~~~  182 (313)
T d1ixka_         110 VALDPKPGEIVADMAAAP-GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHS---SSLH--I-GEL  182 (313)
T ss_dssp             HHHCCCTTCEEEECCSSC-SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESS---CGGG--G-GGG
T ss_pred             hcccCCccceeeecccch-hhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccc---cccc--c-ccc
Confidence            345778999998885544 4445556655543 27999999998887664    467654443322   1110  0 112


Q ss_pred             CCCCccEEE-E--ccCC-------------------------hhHHHHHHHHcccCCcEEEEEc
Q 024295          153 HGMGVDYCF-E--CTGV-------------------------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       153 ~~~~~d~v~-d--~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      . ..||.|+ |  |+|.                         ...+..+++.+++| |++|..-
T Consensus       183 ~-~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~g-G~lVYsT  244 (313)
T d1ixka_         183 N-VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG-GILVYST  244 (313)
T ss_dssp             C-CCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             c-ccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCC-cEEEEee
Confidence            2 3789775 5  4443                         11467888899996 9877654

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=89.45  E-value=0.19  Score=38.80  Aligned_cols=32  Identities=44%  Similarity=0.622  Sum_probs=27.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      -|+|+|+|..|+.++.-+...|. +|+.+++.+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~-~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGA-KVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            48999999999998888888999 899998653

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.24  E-value=0.14  Score=37.82  Aligned_cols=33  Identities=15%  Similarity=0.153  Sum_probs=26.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcC-------CCeEEEEcCCc
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHG-------AAKIIGIDKNP  119 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g-------~~~v~~~~~~~  119 (269)
                      .+|+|+|+|+.|++|+..+...|       + .|.+.++.+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~-~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDM-AVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCE-EEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCC-ceEEEecCC
Confidence            47999999999999888777665       4 788888654

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.23  E-value=0.56  Score=34.47  Aligned_cols=102  Identities=15%  Similarity=0.145  Sum_probs=60.5

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc----ch---------HHHHHhCCCceeeCCCCCCCc
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP----WK---------KEKGKAFGMTDFINPDDEPNK  142 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~----~~---------~~~~~~~g~~~v~~~~~~~~~  142 (269)
                      +.....--.+++++++|+|..|....++....+.++++.+|+.-    ++         ..+.+.....    ..   ..
T Consensus        17 ~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~----~~---~~   89 (222)
T d1vl6a1          17 LKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPE----RL---SG   89 (222)
T ss_dssp             HHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTT----CC---CS
T ss_pred             HHHhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcch----hh---hc
Confidence            33334444689999999999999989999888999999998651    11         1111111101    01   13


Q ss_pred             cHHHHHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          143 SISELVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       143 ~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      ++.+.++      +.+++..........++.+..+.+. -.+.-++.+.
T Consensus        90 ~l~~~l~------g~~~~~g~~~~~~~~~e~m~~~~~r-PIIFpLSNPt  131 (222)
T d1vl6a1          90 DLETALE------GADFFIGVSRGNILKPEWIKKMSRK-PVIFALANPV  131 (222)
T ss_dssp             CHHHHHT------TCSEEEECSCSSCSCHHHHTTSCSS-CEEEECCSSS
T ss_pred             chHhhcc------CcceeccccccccccHHHHhhcCCC-CEEEecCCCc
Confidence            4444332      5677776664432334566666663 5666666655

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=89.12  E-value=0.27  Score=35.09  Aligned_cols=69  Identities=17%  Similarity=0.149  Sum_probs=43.6

Q ss_pred             CCCeEEEE--cCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc---eeeCCCCCCCccHHHHHHhhhCC
Q 024295           84 KGSSVAVL--GLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT---DFINPDDEPNKSISELVKGITHG  154 (269)
Q Consensus        84 ~~~~vlI~--G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~i~~~~~~  154 (269)
                      .+.+||-+  |+|++|+-|+    ..|++.|+.++.+.+..+.+++    ++..   ..+..     .+..+.++.....
T Consensus        43 ~~~~vLDlFaGsG~~glEal----SRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~-----~d~~~~l~~~~~~  113 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEAL----SRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVIN-----QSSLDFLKQPQNQ  113 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHH----HTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEEC-----SCHHHHTTSCCSS
T ss_pred             ccceEeecccCccceeeeee----eecceeeEEeecccchhhhHhhHHhhhccccccccccc-----ccccccccccccC
Confidence            56778877  5678886443    6799999999999887776654    5531   22222     3333444433334


Q ss_pred             CCccEEE
Q 024295          155 MGVDYCF  161 (269)
Q Consensus       155 ~~~d~v~  161 (269)
                      ..||+||
T Consensus       114 ~~fDlIF  120 (183)
T d2ifta1         114 PHFDVVF  120 (183)
T ss_dssp             CCEEEEE
T ss_pred             CcccEEE
Confidence            4799997

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=88.99  E-value=0.6  Score=36.93  Aligned_cols=31  Identities=23%  Similarity=0.366  Sum_probs=25.6

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcC
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDK  117 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~  117 (269)
                      +|||+|+ |-+|...+..+...|...|+++++
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            5899986 899999998888889856777764

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=88.64  E-value=1.9  Score=30.33  Aligned_cols=97  Identities=21%  Similarity=0.252  Sum_probs=53.9

Q ss_pred             CCCCCeEEEEcCChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           82 VEKGSSVAVLGLGTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        82 ~~~~~~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      ++++.+||-+|++|=|.. --+.+.. ...++++++..+-+     .......+..+- ......+.+.....+.++|+|
T Consensus        20 ~k~~~~vlDLg~aPGgw~-q~~~~~~~~~~~v~~vDl~~~~-----~i~~~~~~~~d~-~~~~~~~~~~~~~~~~~~DlV   92 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWS-QYVVTQIGGKGRIIACDLLPMD-----PIVGVDFLQGDF-RDELVMKALLERVGDSKVQVV   92 (180)
T ss_dssp             CCTTCEEEEESCTTCHHH-HHHHHHHCTTCEEEEEESSCCC-----CCTTEEEEESCT-TSHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCCeEEEEeccCCcce-EEEEeeccccceEEEeeccccc-----ccCCceEeeccc-ccchhhhhhhhhccCcceeEE
Confidence            578899999997663442 2223333 33489999865421     222122222211 123444445454455589999


Q ss_pred             EE-----ccCCh------------hHHHHHHHHcccCCcEEEE
Q 024295          161 FE-----CTGVP------------SLLSEALETTKVGKGKVIV  186 (269)
Q Consensus       161 ~d-----~~g~~------------~~~~~~~~~l~~~~G~~v~  186 (269)
                      +-     ++|..            ..+..+.+.+++| |.+|.
T Consensus        93 lSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~g-G~fV~  134 (180)
T d1ej0a_          93 MSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG-GSFVV  134 (180)
T ss_dssp             EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred             EecccchhcccchhHHHHHHHHHHHHHHhhhhccCCC-CcEEE
Confidence            73     33432            1466777889996 98875

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=88.20  E-value=0.27  Score=37.26  Aligned_cols=30  Identities=30%  Similarity=0.424  Sum_probs=26.5

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           88 VAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        88 vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      |+|+|+|.+|+.++.-+...|. +|+++++.
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAF   35 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            8999999999998888777899 99999864

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=88.10  E-value=1  Score=33.96  Aligned_cols=72  Identities=17%  Similarity=0.158  Sum_probs=41.7

Q ss_pred             EEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCC--cchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEcc
Q 024295           88 VAVLGL-GTVGLGAVDGARMHGAAKIIGIDKN--PWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECT  164 (269)
Q Consensus        88 vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~--~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~  164 (269)
                      |||+|+ |-+|..++..+...|...|++++.-  ..+.....+.......+.     .+..+.+.....-...+.++...
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~a   76 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDK-----EDFLIQIMAGEEFGDVEAIFHEG   76 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSCCSEEEEH-----HHHHHHHHTTCCCSSCCEEEECC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcccccchhhhccc-----hHHHHHHhhhhcccchhhhhhhc
Confidence            789986 8899998888887787578888632  223333444432222222     23333333333333677777654

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=87.89  E-value=0.25  Score=38.46  Aligned_cols=34  Identities=38%  Similarity=0.610  Sum_probs=28.5

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      .--|+|+|+|..|+.|+.-+...|. +|+++++.+
T Consensus        19 ~~DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~~   52 (317)
T d1qo8a2          19 TTQVLVVGAGSAGFNASLAAKKAGA-NVILVDKAP   52 (317)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTC-CEEEECSSS
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            3458999999999999888888899 999998653

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.81  E-value=0.31  Score=38.14  Aligned_cols=33  Identities=21%  Similarity=0.279  Sum_probs=28.5

Q ss_pred             CeE-EEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           86 SSV-AVLGL-GTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        86 ~~v-lI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      ++| ||+|+ |-+|..++..+...|+ +|+++++..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY-EVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            467 99986 8899999998888899 999999854

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=87.75  E-value=0.52  Score=32.01  Aligned_cols=38  Identities=16%  Similarity=0.194  Sum_probs=29.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHH
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKE  123 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~  123 (269)
                      .+|.|+|+|.+|..++.++...+...++.++.++++.+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~   39 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQ   39 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccch
Confidence            47889999999998877777666658999998776543

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=87.75  E-value=0.14  Score=36.00  Aligned_cols=90  Identities=20%  Similarity=0.187  Sum_probs=50.8

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCC----C----ceeeCCCCCCCccHHHHHHhhhCCCC
Q 024295           87 SVAVLGL-GTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFG----M----TDFINPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g----~----~~v~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      +|.|+|+ |-+|++.++++... +.+-+-++++.. ....-+..|    .    ..+.+..+           +.  ...
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~-~~~~g~d~~~~~~~~~~~~~~~~~~~-----------~~--~~~   71 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREG-SSLLGSDAGELAGAGKTGVTVQSSLD-----------AV--KDD   71 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTT-CTTCSCCTTCSSSSSCCSCCEESCST-----------TT--TTS
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEeccc-chhccchhhhhhccccCCceeeccHH-----------HH--hcc
Confidence            5788896 99999999988865 552233334321 111111111    0    01111111           11  127


Q ss_pred             ccEEEEccCChhHHHHHHHHcccCCcEEEEEccCCC
Q 024295          157 VDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       157 ~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                      +|+++|.+... .....++..... +.=+.+|.++.
T Consensus        72 ~DViIDFs~p~-~~~~~~~~a~~~-~~~~ViGTTG~  105 (162)
T d1diha1          72 FDVFIDFTRPE-GTLNHLAFCRQH-GKGMVIGTTGF  105 (162)
T ss_dssp             CSEEEECSCHH-HHHHHHHHHHHT-TCEEEECCCCC
T ss_pred             cceEEEeccHH-HHHHHHHHHHhc-cceeEEecCCC
Confidence            89999997544 666777776663 77778886653

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.71  E-value=0.74  Score=35.90  Aligned_cols=101  Identities=18%  Similarity=0.188  Sum_probs=64.8

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHH-HcCCCeEEEEcCCcchHHHH----HhCCCceeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGAR-MHGAAKIIGIDKNPWKKEKG----KAFGMTDFINPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~-~~g~~~v~~~~~~~~~~~~~----~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      +..+++.|+|+|..+..-++.+. ....++|.+.++++++.+..    +..+.....+.        .+.+      .+.
T Consensus       123 ~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~--------~~a~------~~a  188 (320)
T d1omoa_         123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQP--------AEEA------SRC  188 (320)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECC--------HHHH------TSS
T ss_pred             CCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccch--------hhhh------ccc
Confidence            34578889999988877666555 45778999999998876654    33443333221        1222      168


Q ss_pred             cEEEEccCChhH-HHHHHHHcccCCcEEEEEccCCCccccchhH
Q 024295          158 DYCFECTGVPSL-LSEALETTKVGKGKVIVIGVGVDAMVPLNVI  200 (269)
Q Consensus       158 d~v~d~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~  200 (269)
                      |+|+-|+.+... +.  .+.+++| -++..+|.......+++..
T Consensus       189 DiV~taT~s~~P~~~--~~~l~~G-~hv~~iGs~~p~~~Eld~~  229 (320)
T d1omoa_         189 DVLVTTTPSRKPVVK--AEWVEEG-THINAIGADGPGKQELDVE  229 (320)
T ss_dssp             SEEEECCCCSSCCBC--GGGCCTT-CEEEECSCCSTTCCCBCHH
T ss_pred             cEEEEeccCcccccc--hhhcCCC-CeEeecCCccccccccCHH
Confidence            999988865322 22  2458886 8898988765433345543

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=87.50  E-value=0.27  Score=38.39  Aligned_cols=31  Identities=29%  Similarity=0.373  Sum_probs=27.5

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           88 VAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        88 vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      |+|+|+|..|+.|+.-|...|+ +|+.+++.+
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~-~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGL-STIVLSLIP   38 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence            8999999999999888888899 899998654

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=87.40  E-value=0.28  Score=38.18  Aligned_cols=34  Identities=41%  Similarity=0.656  Sum_probs=28.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      .--|+|+|+|..|+.++.-+...|. +|+++++.+
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~G~-~V~llEk~~   56 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDAGA-KVILLEKEP   56 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             cceEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            3448999999999998888888899 899998654

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=87.36  E-value=0.28  Score=37.31  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=27.3

Q ss_pred             CCeEEEEcCChhHHHHHH-HHHHcCCCeEEEEcCCc
Q 024295           85 GSSVAVLGLGTVGLGAVD-GARMHGAAKIIGIDKNP  119 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~-la~~~g~~~v~~~~~~~  119 (269)
                      ..-|+|+|+|+.|+.++. +++..|. +|.++++.+
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~~~   67 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSV   67 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCC-eEEEEecCC
Confidence            345999999999998765 5566799 999999764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=87.26  E-value=0.51  Score=32.23  Aligned_cols=39  Identities=21%  Similarity=0.248  Sum_probs=31.1

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchHH
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKKE  123 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~  123 (269)
                      ..+|.|+|+|.+|...+..+...| +..++.+|.++++.+
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~   44 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTK   44 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhH
Confidence            468999999999999887777766 358999998876543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=87.26  E-value=3  Score=32.13  Aligned_cols=101  Identities=18%  Similarity=0.139  Sum_probs=56.8

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc-eeeCCCCCCCccHHHHHHhhh-CC
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT-DFINPDDEPNKSISELVKGIT-HG  154 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~-~v~~~~~~~~~~~~~~i~~~~-~~  154 (269)
                      +..++.+||-+.+|+ |..++.++ ..|+ +|+.+|.++...+.+++    .|.. .-+....   .|..+.+.... .+
T Consensus       129 ~~~~~~rVLdlf~~t-G~~sl~aa-~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~---~D~~~~l~~~~~~~  202 (309)
T d2igta1         129 TADRPLKVLNLFGYT-GVASLVAA-AAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWIC---EDAMKFIQREERRG  202 (309)
T ss_dssp             HSSSCCEEEEETCTT-CHHHHHHH-HTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEEC---SCHHHHHHHHHHHT
T ss_pred             hccCCCeEEEecCCC-cHHHHHHH-hCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEe---CCHHHhHHHHhhcC
Confidence            456788999886543 44444444 3588 89999999988888865    1321 0111111   44444444332 24


Q ss_pred             CCccEEE-Ecc----CC-----------hhHHHHHHHHcccCCcEEEEEc
Q 024295          155 MGVDYCF-ECT----GV-----------PSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       155 ~~~d~v~-d~~----g~-----------~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ..||+|+ |.-    +.           ...+..+..+++++ |.++++.
T Consensus       203 ~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~-g~~ll~t  251 (309)
T d2igta1         203 STYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPK-ALGLVLT  251 (309)
T ss_dssp             CCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTT-CCEEEEE
T ss_pred             CCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCC-CCEEEEe
Confidence            4899886 311    10           11234556678886 7655553

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=87.17  E-value=2.2  Score=33.97  Aligned_cols=54  Identities=24%  Similarity=0.234  Sum_probs=39.3

Q ss_pred             CCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcC---CcchHHHHHhCCCceeeC
Q 024295           81 KVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDK---NPWKKEKGKAFGMTDFIN  135 (269)
Q Consensus        81 ~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~---~~~~~~~~~~~g~~~v~~  135 (269)
                      +++++.+|+--.+|+.|.+++.+++.+|. +++++..   +++|.+.++.+|++-+..
T Consensus       140 ~~~~g~~VVeaSSGN~GiAlA~~aa~lGi-k~~Iv~P~~~~~~K~~~ira~GAeVi~~  196 (382)
T d1wkva1         140 RVEKGSLVADATSSNFGVALSAVARLYGY-RARVYLPGAAEEFGKLLPRLLGAQVIVD  196 (382)
T ss_dssp             TSCTTCEEEEECCHHHHHHHHHHHHHTTC-EEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCCEEEEeCCcHHHHHHHHHHHHcCC-CEEEEeeccccccccccccccCcceeec
Confidence            46677765544679999999999999999 5544432   356777788899875543

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=86.98  E-value=0.58  Score=31.96  Aligned_cols=37  Identities=32%  Similarity=0.509  Sum_probs=29.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchH
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKK  122 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~  122 (269)
                      ++|.|+|+|.+|..++..+...| +.+++.+|.++++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~   39 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKV   39 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchh
Confidence            67899999999988887777666 45888999887654

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.96  E-value=1  Score=35.90  Aligned_cols=97  Identities=19%  Similarity=0.097  Sum_probs=61.7

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCcee--------------eCCCCCCCccHHH
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMTDF--------------INPDDEPNKSISE  146 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~~v--------------~~~~~~~~~~~~~  146 (269)
                      +.+||- +.+++|.-++.+++..|+++|++.|.+++-.+.+++    .+....              +....   .+.-.
T Consensus        46 ~~~vLD-~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~---~Da~~  121 (375)
T d2dula1          46 PKIVLD-ALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINH---DDANR  121 (375)
T ss_dssp             CSEEEE-SSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEE---SCHHH
T ss_pred             CCEEEE-cCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeeh---hhhhh
Confidence            344433 445668999999999898899999999988888764    121110              00000   22222


Q ss_pred             HHHhhhCCCCccEE-EEccCChh-HHHHHHHHcccCCcEEEEEc
Q 024295          147 LVKGITHGMGVDYC-FECTGVPS-LLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       147 ~i~~~~~~~~~d~v-~d~~g~~~-~~~~~~~~l~~~~G~~v~~g  188 (269)
                      .+.+  .+..||+| +|..|.+. .++.+++.++.+ |.+....
T Consensus       122 ~~~~--~~~~fDvIDiDPfGs~~pfldsAi~a~~~~-Gll~vTa  162 (375)
T d2dula1         122 LMAE--RHRYFHFIDLDPFGSPMEFLDTALRSAKRR-GILGVTA  162 (375)
T ss_dssp             HHHH--STTCEEEEEECCSSCCHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             hhHh--hcCcCCcccCCCCCCcHHHHHHHHHHhccC-CEEEEEe
Confidence            2222  23479977 79988743 578999999985 7665543

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.92  E-value=0.35  Score=38.86  Aligned_cols=33  Identities=21%  Similarity=0.446  Sum_probs=25.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHH------cCCCeEEEEcCCc
Q 024295           86 SSVAVLGLGTVGLGAVDGARM------HGAAKIIGIDKNP  119 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~------~g~~~v~~~~~~~  119 (269)
                      --|+|+|+|+.|++|+..+..      .|. +|.++++..
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl-~VlllEK~~   71 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAA   71 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCC-EEEEEcCCC
Confidence            358999999999887554443      688 999998753

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.84  E-value=0.42  Score=32.17  Aligned_cols=66  Identities=17%  Similarity=0.117  Sum_probs=39.9

Q ss_pred             CCCCeEEEEcCChhHHHHHH-H---HHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCcc
Q 024295           83 EKGSSVAVLGLGTVGLGAVD-G---ARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVD  158 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~-l---a~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d  158 (269)
                      ++.++++|+|+|.+|.=++. +   ++..|. +|+.+.+++.-+            ...  -+.+..+.+.+.....|+.
T Consensus        35 ~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~~~~l------------~~~--~~~~~~~~~~~~l~~~GV~   99 (137)
T d1m6ia2          35 REVKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPEKGNM------------GKI--LPEYLSNWTMEKVRREGVK   99 (137)
T ss_dssp             HHCSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSSSSTT------------TTT--SCHHHHHHHHHHHHTTTCE
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEecccccCC------------ccc--CCHHHHHHHHHHHHhCCcE
Confidence            45789999999998854332 2   245788 899888653211            100  0144555555554455777


Q ss_pred             EEEEc
Q 024295          159 YCFEC  163 (269)
Q Consensus       159 ~v~d~  163 (269)
                      +.+++
T Consensus       100 ~~~~~  104 (137)
T d1m6ia2         100 VMPNA  104 (137)
T ss_dssp             EECSC
T ss_pred             EEeCC
Confidence            77654

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=86.78  E-value=0.37  Score=36.24  Aligned_cols=30  Identities=33%  Similarity=0.503  Sum_probs=27.1

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           88 VAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        88 vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      ++|+|+|+.|+.|+..+...|. +|..+++.
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~-~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNA-KVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            7889999999999999999999 99999864

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.72  E-value=3.4  Score=28.59  Aligned_cols=70  Identities=14%  Similarity=0.013  Sum_probs=39.1

Q ss_pred             eEEEEcCChhH--HHHHHHHHHcC---CCeEEEEcCCcch--HHHHH--------hCCCc-eeeCCCCCCCccHHHHHHh
Q 024295           87 SVAVLGLGTVG--LGAVDGARMHG---AAKIIGIDKNPWK--KEKGK--------AFGMT-DFINPDDEPNKSISELVKG  150 (269)
Q Consensus        87 ~vlI~G~g~~G--~~a~~la~~~g---~~~v~~~~~~~~~--~~~~~--------~~g~~-~v~~~~~~~~~~~~~~i~~  150 (269)
                      +|.|+|+|++|  .+...+++...   ...++-+|.++++  .+.+.        +++.. .+...     .+..+.+  
T Consensus         3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~-----td~~~al--   75 (169)
T d1s6ya1           3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLT-----LDRRRAL--   75 (169)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEE-----SCHHHHH--
T ss_pred             EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeec-----CCchhhc--
Confidence            57899987655  55556665432   2378888877643  33221        22332 22222     2222222  


Q ss_pred             hhCCCCccEEEEccCCh
Q 024295          151 ITHGMGVDYCFECTGVP  167 (269)
Q Consensus       151 ~~~~~~~d~v~d~~g~~  167 (269)
                          .+.|+|+.+++.+
T Consensus        76 ----~gaDvVv~ta~~~   88 (169)
T d1s6ya1          76 ----DGADFVTTQFRVG   88 (169)
T ss_dssp             ----TTCSEEEECCCTT
T ss_pred             ----CCCCEEEEccccC
Confidence                1789999999754

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.59  E-value=0.083  Score=37.43  Aligned_cols=130  Identities=18%  Similarity=0.145  Sum_probs=66.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHc-CCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           87 SVAVLGLGTVGLGAVDGARMH-GAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      +|.|+|+|.+|..-+...+.. +...+..++...++     +....  .....   .++.+.+    ....+|+|+-++.
T Consensus         9 kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~---~~~~e~l----~~~~iD~V~I~tp   74 (172)
T d1lc0a1           9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR-----ELGSL--DEVRQ---ISLEDAL----RSQEIDVAYICSE   74 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS-----CCCEE--TTEEB---CCHHHHH----HCSSEEEEEECSC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH-----HHHHh--hccCc---CCHHHHH----hCCCcchhhhccc
Confidence            689999999987655444432 22223333322111     11100  00011   2233333    2348999999998


Q ss_pred             ChhHHHHHHHHcccCCcEEEEEccCCCccccchhHh---hh-hCCceEEeeeccCCCCCCcHHHHHHHHHCCCC
Q 024295          166 VPSLLSEALETTKVGKGKVIVIGVGVDAMVPLNVIA---LA-CGGRTLKGTTFGGIKTKSDLPTLLDKCKNKEF  235 (269)
Q Consensus       166 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~  235 (269)
                      ...+.+.+..++..  |+-|++.-|... ..-....   +. .++..+.-...  +.....+..+.+++.+|.+
T Consensus        75 ~~~H~~~~~~al~~--gk~V~~EKP~a~-~~~e~~~l~~~a~~~~~~~~v~~~--~r~~p~~~~~k~~i~~~~l  143 (172)
T d1lc0a1          75 SSSHEDYIRQFLQA--GKHVLVEYPMTL-SFAAAQELWELAAQKGRVLHEEHV--ELLKNIFLKDQDIFVQKLL  143 (172)
T ss_dssp             GGGHHHHHHHHHHT--TCEEEEESCSCS-CHHHHHHHHHHHHHTTCCEEEECG--GGGTTHHHHHHHHHHHHHT
T ss_pred             cccccccccccccc--chhhhcCCCccc-cHHHHHHHHHHHHHcCCeEEEecH--HHhhHHHHHHHHHHHcCCC
Confidence            87777778888887  566777765431 1111112   22 23333322221  1223457778888877664

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=86.57  E-value=0.68  Score=32.83  Aligned_cols=67  Identities=15%  Similarity=0.091  Sum_probs=41.8

Q ss_pred             CCCeEEEEcC--ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHHhhhCCC
Q 024295           84 KGSSVAVLGL--GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVKGITHGM  155 (269)
Q Consensus        84 ~~~~vlI~G~--g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~~~~~~  155 (269)
                      .+.+||-+.+  |.+|+   . |...|+++|+.++.+++..+.+++    ++..  .++.      .+..+.+..  .+.
T Consensus        43 ~~~~vLDlfaGsG~~gi---e-alsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~------~d~~~~l~~--~~~  110 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGL---E-ALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVN------SNAMSFLAQ--KGT  110 (183)
T ss_dssp             TTCEEEETTCTTCHHHH---H-HHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEEC------SCHHHHHSS--CCC
T ss_pred             chhhhhhhhccccceee---e-EEecCcceeEEEEEeechhhHHHHHHhhccccceeeee------ecccccccc--ccc
Confidence            5678888754  55554   3 344788899999999988887754    4432  2332      333333432  234


Q ss_pred             CccEEEE
Q 024295          156 GVDYCFE  162 (269)
Q Consensus       156 ~~d~v~d  162 (269)
                      .||+||=
T Consensus       111 ~fDlIf~  117 (183)
T d2fpoa1         111 PHNIVFV  117 (183)
T ss_dssp             CEEEEEE
T ss_pred             ccCEEEE
Confidence            8999973

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=86.56  E-value=0.9  Score=33.60  Aligned_cols=97  Identities=8%  Similarity=0.046  Sum_probs=56.8

Q ss_pred             CeEEEEcCChhH----HHHHHHHHHc--CCCeEEEE-cCCcchHHH-HHhCCCceeeCCCCCCCccHHHHHHhhhCCCCc
Q 024295           86 SSVAVLGLGTVG----LGAVDGARMH--GAAKIIGI-DKNPWKKEK-GKAFGMTDFINPDDEPNKSISELVKGITHGMGV  157 (269)
Q Consensus        86 ~~vlI~G~g~~G----~~a~~la~~~--g~~~v~~~-~~~~~~~~~-~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~  157 (269)
                      =+|.|+|+|..|    ..-+...+..  ++ +++++ ++++++.+. +++++....-.+     .++.+.+.    ...+
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~-~ivav~d~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~----~~~i   86 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQF-QIVALYNPTLKSSLQTIEQLQLKHATGF-----DSLESFAQ----YKDI   86 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTE-EEEEEECSCHHHHHHHHHHTTCTTCEEE-----SCHHHHHH----CTTC
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCe-EEEEEEcCCHHHHHHHHHhcccccceee-----cchhhccc----cccc
Confidence            368899987533    2223334433  45 66654 566655544 566764322212     23433332    3389


Q ss_pred             cEEEEccCChhHHHHHHHHcccC----CcEEEEEccCCC
Q 024295          158 DYCFECTGVPSLLSEALETTKVG----KGKVIVIGVGVD  192 (269)
Q Consensus       158 d~v~d~~g~~~~~~~~~~~l~~~----~G~~v~~g~~~~  192 (269)
                      |+|+.++....+.+.+..++..|    .++-|++..+-.
T Consensus        87 D~V~i~tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla  125 (237)
T d2nvwa1          87 DMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALA  125 (237)
T ss_dssp             SEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSS
T ss_pred             ceeeccCCCcchhhHHHHHHHhcccccCCceEEEecccc
Confidence            99999998777777777777653    145678876553

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=86.52  E-value=0.74  Score=31.95  Aligned_cols=40  Identities=18%  Similarity=0.199  Sum_probs=33.0

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchH
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKK  122 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~  122 (269)
                      .+..+|.|+|+|.+|..++..+...|. .+++.+|.++++.
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a   58 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKL   58 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence            356799999999999999888888874 5899999876554

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=86.11  E-value=0.22  Score=37.92  Aligned_cols=61  Identities=20%  Similarity=0.326  Sum_probs=36.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEccC
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFECTG  165 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  165 (269)
                      +|||+|+ |-+|...+..+...|  .++++++....      +    ..|-.+  ...+.+.+++.    ++|+||++++
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g--~~v~~~~~~~~------~----~~Dl~~--~~~~~~~i~~~----~~D~Vih~Aa   63 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVG--NLIALDVHSKE------F----CGDFSN--PKGVAETVRKL----RPDVIVNAAA   63 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTS--EEEEECTTCSS------S----CCCTTC--HHHHHHHHHHH----CCSEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCC--CEEEEECCCcc------c----cCcCCC--HHHHHHHHHHc----CCCEEEEecc
Confidence            5899986 999999887776655  46666544321      1    112111  12233334332    6899999886

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=86.04  E-value=0.82  Score=33.90  Aligned_cols=49  Identities=8%  Similarity=0.096  Sum_probs=40.4

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA  127 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~  127 (269)
                      +...+.++++++||-+|.|. |.+...+++. +. +|++++.+++-.+.+++
T Consensus        13 iv~~~~~~~~d~VlEIGpG~-G~LT~~Ll~~-~~-~v~avE~D~~l~~~l~~   61 (235)
T d1qama_          13 IMTNIRLNEHDNIFEIGSGK-GHFTLELVQR-CN-FVTAIEIDHKLCKTTEN   61 (235)
T ss_dssp             HHTTCCCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEECSCHHHHHHHHH
T ss_pred             HHHhcCCCCCCeEEEECCCc-hHHHHHHHhC-cC-ceEEEeeccchHHHHHH
Confidence            44667889999999999986 8888888875 55 99999998877777765

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=85.93  E-value=0.8  Score=30.96  Aligned_cols=38  Identities=16%  Similarity=0.170  Sum_probs=30.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHHH
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKEK  124 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~~  124 (269)
                      +|.|+|+|.+|......+...+. .++..+|.++++.+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~   40 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQG   40 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchh
Confidence            57899999999998888777763 589999988766543

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=85.87  E-value=0.94  Score=31.75  Aligned_cols=100  Identities=17%  Similarity=0.283  Sum_probs=54.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHc-CCCeEEEEcCC--cchHHHHHhC----C---C-------ceeeCCCC---CCCccHHH
Q 024295           87 SVAVLGLGTVGLGAVDGARMH-GAAKIIGIDKN--PWKKEKGKAF----G---M-------TDFINPDD---EPNKSISE  146 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~-g~~~v~~~~~~--~~~~~~~~~~----g---~-------~~v~~~~~---~~~~~~~~  146 (269)
                      +|.|.|-|.+|.++...+... .. +++++-..  .+...++-++    |   .       ...++...   ....+.. 
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~-~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~-   80 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDI-EVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPE-   80 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTE-EEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGG-
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCc-EEEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCHH-
Confidence            578999999999988777543 34 66666422  2333333221    1   0       01111100   0001111 


Q ss_pred             HHHhhhCCCCccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          147 LVKGITHGMGVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       147 ~i~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      ++ .|. ..++|+|+||+|.-...+.+...+..| .+-|.+..+.
T Consensus        81 ~i-~W~-~~~vDiViEcTG~f~t~~~~~~hl~~g-akkViiSap~  122 (171)
T d3cmco1          81 NL-AWG-EIGVDIVVESTGRFTKREDAAKHLEAG-AKKVIISAPA  122 (171)
T ss_dssp             GC-CTG-GGTCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCC
T ss_pred             Hc-ccc-ccCCcEEEEecCccCCHHHHHHHHhCC-CceEEEeccc
Confidence            11 111 238999999999765667777888875 6666665544

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=85.79  E-value=0.79  Score=31.12  Aligned_cols=38  Identities=29%  Similarity=0.318  Sum_probs=30.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHH
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKE  123 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~  123 (269)
                      .+|.|+|+|.+|..++..+...+. .+++.+|.++++.+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~   40 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVE   40 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccch
Confidence            468899999999998888777764 48999998876543

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.78  E-value=0.48  Score=37.00  Aligned_cols=32  Identities=19%  Similarity=0.376  Sum_probs=28.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcC
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDK  117 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~  117 (269)
                      -+++||+|+ |-+|...+..+...|. +|+++++
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~   48 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   48 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            468999986 9999999999999999 9999985

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.73  E-value=0.44  Score=32.46  Aligned_cols=89  Identities=16%  Similarity=0.101  Sum_probs=49.0

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHcC--CCeEEEEcCCcchHHHHHhCCCceeeCCCCCCCccHHHHHHhhhCCCCccEEEEc
Q 024295           87 SVAVLGL-GTVGLGAVDGARMHG--AAKIIGIDKNPWKKEKGKAFGMTDFINPDDEPNKSISELVKGITHGMGVDYCFEC  163 (269)
Q Consensus        87 ~vlI~G~-g~~G~~a~~la~~~g--~~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~  163 (269)
                      +|.|+|+ |-+|+-.++++...+  ..++..+..+...-+.+...+.+..+.       +..    . ..-.+.|++|-+
T Consensus         4 nVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~-------~~~----~-~~~~~~d~vf~a   71 (144)
T d2hjsa1           4 NVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVG-------DVD----S-FDFSSVGLAFFA   71 (144)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECE-------EGG----G-CCGGGCSEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhc-------cch----h-hhhccceEEEec
Confidence            6899997 999999999886443  225655543322111111111111111       110    0 111278999999


Q ss_pred             cCChhHHHHHHHHcccCCcEEEEEc
Q 024295          164 TGVPSLLSEALETTKVGKGKVIVIG  188 (269)
Q Consensus       164 ~g~~~~~~~~~~~l~~~~G~~v~~g  188 (269)
                      ++...+....-+....+ .+++..+
T Consensus        72 ~p~~~s~~~~~~~~~~g-~~VID~S   95 (144)
T d2hjsa1          72 AAAEVSRAHAERARAAG-CSVIDLS   95 (144)
T ss_dssp             SCHHHHHHHHHHHHHTT-CEEEETT
T ss_pred             CCcchhhhhccccccCC-ceEEeec
Confidence            98775555555556664 6666654

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=85.31  E-value=0.92  Score=34.73  Aligned_cols=31  Identities=19%  Similarity=0.225  Sum_probs=25.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcC
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDK  117 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~  117 (269)
                      ++|||+|+ |-+|...+..+...|. .+++++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~-~vi~~~~   34 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRT   34 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT-EEEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC-EEEEecC
Confidence            57999986 9999999998888888 6776654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=85.22  E-value=0.92  Score=30.94  Aligned_cols=47  Identities=13%  Similarity=0.077  Sum_probs=37.6

Q ss_pred             hhhHHHHHHhcCCCCCCeEEEE--cCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           70 TTGYGAAWKEAKVEKGSSVAVL--GLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        70 ~~a~~~l~~~~~~~~~~~vlI~--G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      .|....+  ..+..+++.++|+  |+|-+|+-+++.+...|. +|+.+++.+
T Consensus        26 ~t~~d~l--~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~   74 (156)
T d1djqa2          26 LTPEQVM--DGKKKIGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH   74 (156)
T ss_dssp             ECHHHHH--HTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             ECHHHHh--cCccccCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence            3555544  3566788899888  678999999999999999 999998764

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.13  E-value=0.7  Score=33.96  Aligned_cols=36  Identities=14%  Similarity=0.177  Sum_probs=29.0

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHH--------------------cCCCeEEEEcCCc
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARM--------------------HGAAKIIGIDKNP  119 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~--------------------~g~~~v~~~~~~~  119 (269)
                      ++++|+|+|.|.+++-++..+..                    .|+++|..+.|..
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             cCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            48999999999999988887775                    4777777777653

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=85.09  E-value=3.3  Score=32.33  Aligned_cols=103  Identities=20%  Similarity=0.273  Sum_probs=64.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHH-HHcCCCeEEEEcCCcchHHH-HHhC----CCceeeCCCCCCCccHHHHHHhhhCCCC
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGA-RMHGAAKIIGIDKNPWKKEK-GKAF----GMTDFINPDDEPNKSISELVKGITHGMG  156 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la-~~~g~~~v~~~~~~~~~~~~-~~~~----g~~~v~~~~~~~~~~~~~~i~~~~~~~~  156 (269)
                      +..+++.|+|+|..+..-++.. ...+.++|.+.++++++.+. ++++    |.. +...     .+..+.++      +
T Consensus       126 ~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~-v~~~-----~s~~eav~------~  193 (340)
T d1x7da_         126 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLT-IRRA-----SSVAEAVK------G  193 (340)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCE-EEEC-----SSHHHHHT------T
T ss_pred             cCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCC-ceec-----CCHHHHHh------c
Confidence            3457889999998887655544 46788899999999876554 3333    322 2111     33444443      6


Q ss_pred             ccEEEEccCCh---hHHHHHHHHcccCCcEEEEEccCCCccccchhH
Q 024295          157 VDYCFECTGVP---SLLSEALETTKVGKGKVIVIGVGVDAMVPLNVI  200 (269)
Q Consensus       157 ~d~v~d~~g~~---~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~  200 (269)
                      .|+|+-|+..+   +.+.  .+.+++| -++..+|.......+++..
T Consensus       194 ADIi~t~Tas~s~~Pv~~--~~~l~pG-~hI~aiGs~~p~~~Eld~~  237 (340)
T d1x7da_         194 VDIITTVTADKAYATIIT--PDMLEPG-MHLNAVGGDCPGKTELHAD  237 (340)
T ss_dssp             CSEEEECCCCSSEEEEEC--GGGCCTT-CEEEECSCCBTTBEEECHH
T ss_pred             CCceeeccccCCCCcccc--hhhcCCC-CEEeecccchhhhhccCHH
Confidence            89998777432   1222  2568886 8888888665433445443

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.06  E-value=2.7  Score=29.85  Aligned_cols=35  Identities=29%  Similarity=0.437  Sum_probs=26.4

Q ss_pred             CccEEEEccCChhHHHHHHHHcccCCcEEEEEccCC
Q 024295          156 GVDYCFECTGVPSLLSEALETTKVGKGKVIVIGVGV  191 (269)
Q Consensus       156 ~~d~v~d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  191 (269)
                      ++|+|+||+|.-...+.+..++..| .+-|.+..+.
T Consensus       103 gvDiViEcTG~f~~~~~a~~hl~~G-akkViiSAP~  137 (190)
T d1k3ta1         103 GVEYVIESTGLFTAKAAAEGHLRGG-ARKVVISAPA  137 (190)
T ss_dssp             TCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESSCC
T ss_pred             CCcEEEEecccccccccchhhcccC-cceeeeccCC
Confidence            8999999999655667777888875 6666665543

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=84.77  E-value=0.54  Score=35.30  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=28.6

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      .-.++|+|+|+.|+.++..+..+|. +|.++++.+
T Consensus        42 ~yDvvVIGgG~aG~~aA~~~a~~G~-kv~vve~~~   75 (261)
T d1mo9a1          42 EYDAIFIGGGAAGRFGSAYLRAMGG-RQLIVDRWP   75 (261)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            3358999999999999999999999 888887643

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.72  E-value=1.3  Score=37.01  Aligned_cols=35  Identities=17%  Similarity=0.258  Sum_probs=29.4

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      ..+|+|+|+|++|.-++.-+.+.|..+++.+|.+.
T Consensus        25 ~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          25 SAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             HCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            47899999999999888777788998999987543

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=84.43  E-value=1.2  Score=33.15  Aligned_cols=98  Identities=11%  Similarity=0.077  Sum_probs=60.6

Q ss_pred             CCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHh----CCCc--eeeCCCCCCCccHHHHHHhh-hCCC
Q 024295           83 EKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKA----FGMT--DFINPDDEPNKSISELVKGI-THGM  155 (269)
Q Consensus        83 ~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~--~v~~~~~~~~~~~~~~i~~~-~~~~  155 (269)
                      ....+++-+|+|+ |.=.+-++-...-.+++.++++..|..+++.    +|..  .+++.+-       +.+... .-..
T Consensus        69 ~~~~~ilDiGSGa-GfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~-------E~~~~~~~~~~  140 (239)
T d1xdza_          69 NQVNTICDVGAGA-GFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRA-------ETFGQRKDVRE  140 (239)
T ss_dssp             GGCCEEEEECSSS-CTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCH-------HHHTTCTTTTT
T ss_pred             cCCCeEEeecCCC-chHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehh-------hhccccccccc
Confidence            3567899998754 4444455555544499999999999998754    5643  3444331       122111 1123


Q ss_pred             CccEEEE-ccCC-hhHHHHHHHHcccCCcEEEEEcc
Q 024295          156 GVDYCFE-CTGV-PSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       156 ~~d~v~d-~~g~-~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      .||+|.- ++.. +..+..+...++++ |+++.+=.
T Consensus       141 ~~D~v~sRAva~l~~ll~~~~~~l~~~-g~~i~~KG  175 (239)
T d1xdza_         141 SYDIVTARAVARLSVLSELCLPLVKKN-GLFVALKA  175 (239)
T ss_dssp             CEEEEEEECCSCHHHHHHHHGGGEEEE-EEEEEEEC
T ss_pred             cceEEEEhhhhCHHHHHHHHhhhcccC-CEEEEECC
Confidence            7898874 5543 33466777788885 99888743

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=84.30  E-value=2  Score=29.06  Aligned_cols=62  Identities=15%  Similarity=0.066  Sum_probs=46.3

Q ss_pred             HHHhcCCCCCCeEEEEc-CChhHHHHHHHHHHcC-CCeEEEEcCCcchHHHHHhCCCceeeCCC
Q 024295           76 AWKEAKVEKGSSVAVLG-LGTVGLGAVDGARMHG-AAKIIGIDKNPWKKEKGKAFGMTDFINPD  137 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G-~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~~~~~~~g~~~v~~~~  137 (269)
                      .++.+++...+.+++.- .-..=..++..+|.++ ..++++...+++..+.+++.|++.++++.
T Consensus        63 ~L~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~  126 (153)
T d1id1a_          63 VLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQ  126 (153)
T ss_dssp             HHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEECHH
T ss_pred             HHHHhccccCCEEEEccccHHHHHHHHHHHHHhCCCCceEEEEcCHHHHHHHHHCCCCEEECHH
Confidence            34678888777777763 3344566677787764 33899998899999999999999998764

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.30  E-value=5.6  Score=28.54  Aligned_cols=103  Identities=16%  Similarity=0.039  Sum_probs=57.2

Q ss_pred             HHHhcCCCCCCeEEEE-cC---ChhHHHHHHHHHHcCCCeEEEEcCCcchHH-------HHHhCCCceeeCCCCCCCccH
Q 024295           76 AWKEAKVEKGSSVAVL-GL---GTVGLGAVDGARMHGAAKIIGIDKNPWKKE-------KGKAFGMTDFINPDDEPNKSI  144 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~-G~---g~~G~~a~~la~~~g~~~v~~~~~~~~~~~-------~~~~~g~~~v~~~~~~~~~~~  144 (269)
                      +.+..+-.+..+|+|+ |.   |+=|+++...++..|+ +|.++-..+++..       ..++++... ++..+   .. 
T Consensus        31 i~~~~~~~~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~-~V~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~-  104 (211)
T d2ax3a2          31 MEEELGNLSDYRFLVLCGGGNNGGDGFVVARNLLGVVK-DVLVVFLGKKKTPDCEYNYGLYKKFGGKV-VEQFE---PS-  104 (211)
T ss_dssp             HHHHHSCCTTCEEEEEECSSHHHHHHHHHHHHHTTTSS-EEEEEECCSSCCHHHHHHHHHHHHTTCCE-ESCCC---GG-
T ss_pred             HHHhcccccCCcEEEEECCCCCchhHHHHHHHHHhcCC-eeEEEecCccCCcHHHHHHHHHHHcCCcc-ccccc---cc-
Confidence            3343333345678777 64   4556777777777788 7766654332222       123344332 22221   11 


Q ss_pred             HHHHHhhhCCCCccEEEEcc-CC------hhHHHHHHHHcccCCcEEEEEccCCC
Q 024295          145 SELVKGITHGMGVDYCFECT-GV------PSLLSEALETTKVGKGKVIVIGVGVD  192 (269)
Q Consensus       145 ~~~i~~~~~~~~~d~v~d~~-g~------~~~~~~~~~~l~~~~G~~v~~g~~~~  192 (269)
                           .   ...+|+++|+. |.      +..+.++.+.++.....++.+..+++
T Consensus       105 -----~---~~~~dlIIDal~G~Gl~~~l~~~~~~~i~~iN~~~~~vlsiDiPSG  151 (211)
T d2ax3a2         105 -----I---LNEFDVVVDAIFGTGLRGEITGEYAEIINLVNKSGKVVVSVDVPSG  151 (211)
T ss_dssp             -----G---GGGCSEEEEESCCTTCCSCCCHHHHHHHHHHHHSCCEEEEESSCTT
T ss_pred             -----c---ccCceEEEEecccCCccccchHHHHHHHHHHHhhccceeeeccCcc
Confidence                 0   12689999998 32      22456777777764356778877765

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.99  E-value=1  Score=31.09  Aligned_cols=38  Identities=21%  Similarity=0.383  Sum_probs=30.8

Q ss_pred             CCeEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchH
Q 024295           85 GSSVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKK  122 (269)
Q Consensus        85 ~~~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~  122 (269)
                      ..+|.|+|+|.+|..++..+...+. .+++.+|.++++.
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a   57 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTDKL   57 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhh
Confidence            3579999999999999888887764 4799999876554

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.89  E-value=2.1  Score=28.96  Aligned_cols=82  Identities=12%  Similarity=0.120  Sum_probs=42.6

Q ss_pred             CeEEEEcC-ChhHHHHHHH-HHHc--CCCeEEEEcCCcchHHHHHhCCC-ceeeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           86 SSVAVLGL-GTVGLGAVDG-ARMH--GAAKIIGIDKNPWKKEKGKAFGM-TDFINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~l-a~~~--g~~~v~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      ++|.|+|+ |-+|+-.+++ +.+.  -..+++...++...-......+. ..+.+.     .+.. .+      .++|++
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~-----~~~~-~~------~~~Div   69 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDA-----FDLE-AL------KALDII   69 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEET-----TCHH-HH------HTCSEE
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecc-----cchh-hh------hcCcEE
Confidence            36899997 9999999974 4432  33366666544322111111111 111111     1111 11      178999


Q ss_pred             EEccCChhHHHHHHHHccc
Q 024295          161 FECTGVPSLLSEALETTKV  179 (269)
Q Consensus       161 ~d~~g~~~~~~~~~~~l~~  179 (269)
                      |-|++...+....-+....
T Consensus        70 F~a~~~~~s~~~~~~~~~~   88 (146)
T d1t4ba1          70 VTCQGGDYTNEIYPKLRES   88 (146)
T ss_dssp             EECSCHHHHHHHHHHHHHT
T ss_pred             EEecCchHHHHhhHHHHhc
Confidence            9999877554444444444

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.63  E-value=0.88  Score=33.16  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=27.9

Q ss_pred             CCCeEEEEcCChhHHHHHHHHH--------------------HcCCCeEEEEcCC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGAR--------------------MHGAAKIIGIDKN  118 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~--------------------~~g~~~v~~~~~~  118 (269)
                      .+++|+|+|.|.+++-++.++.                    ..|+++|+.+.|.
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RR   92 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRR   92 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSS
T ss_pred             cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEEC
Confidence            4799999999999988776654                    4677788888764

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.34  E-value=7.5  Score=29.26  Aligned_cols=55  Identities=16%  Similarity=0.143  Sum_probs=38.2

Q ss_pred             HhcCCCCCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEc--CCcchHHHHHhCCCce
Q 024295           78 KEAKVEKGSSVAVLGLGTVGLGAVDGARMHGAAKIIGID--KNPWKKEKGKAFGMTD  132 (269)
Q Consensus        78 ~~~~~~~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~--~~~~~~~~~~~~g~~~  132 (269)
                      +...++++.+|...++|+.|.++...++.+|.+.++.+.  .++.+...++.+|+.-
T Consensus        54 ~~g~~~~~~~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v  110 (302)
T d1fcja_          54 KRGVLKPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANL  110 (302)
T ss_dssp             HHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEE
T ss_pred             HcCCCCCCceEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccce
Confidence            445666777766667899999999999999985433333  2345666677777653

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.22  E-value=0.66  Score=36.20  Aligned_cols=31  Identities=29%  Similarity=0.214  Sum_probs=27.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHcCCCeEEEEcC
Q 024295           86 SSVAVLGL-GTVGLGAVDGARMHGAAKIIGIDK  117 (269)
Q Consensus        86 ~~vlI~G~-g~~G~~a~~la~~~g~~~v~~~~~  117 (269)
                      ++|||+|+ |-+|...+..+...|. .|+++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            68999986 9999999988888898 8998863

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=83.20  E-value=0.85  Score=33.69  Aligned_cols=32  Identities=16%  Similarity=0.181  Sum_probs=27.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcCCc
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDKNP  119 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~~  119 (269)
                      -|+|+|+|+.|+-|+..+...|. ++..++.+.
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~-ktllit~~~   35 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGV-RVGLLTQSL   35 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESCG
T ss_pred             cEEEECcCHHHHHHHHHHHHCCC-cEEEEEecc
Confidence            37899999999999999999999 777776553

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.76  E-value=0.81  Score=33.60  Aligned_cols=32  Identities=25%  Similarity=0.302  Sum_probs=24.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCC--eEEEEcCC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAA--KIIGIDKN  118 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~--~v~~~~~~  118 (269)
                      +|+|+|+|+.|+.|+..|..+|.+  +|..+++.
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~   36 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCD   36 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence            689999999999888777666643  67777753

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=82.20  E-value=0.57  Score=29.95  Aligned_cols=33  Identities=21%  Similarity=0.051  Sum_probs=20.2

Q ss_pred             CCCeEEEEcCChhHHHHHHHHHHcCCCeEEEEcC
Q 024295           84 KGSSVAVLGLGTVGLGAVDGARMHGAAKIIGIDK  117 (269)
Q Consensus        84 ~~~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~  117 (269)
                      +|++|+|+|+|..|.-.+.-+...+. +++...+
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak-~v~~~~~   63 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAK-HPIYQSL   63 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSC-SSEEEEC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcC-EEEEEEe
Confidence            68999999998777654333333333 4444443

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.00  E-value=0.87  Score=33.13  Aligned_cols=31  Identities=29%  Similarity=0.319  Sum_probs=24.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCCCeEEEEcC
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGAAKIIGIDK  117 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~  117 (269)
                      -|+|+|+|+.|+.++..+...|.++|..++.
T Consensus         5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~   35 (238)
T d1aoga1           5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDV   35 (238)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEe
Confidence            3788899999999888877777757777764

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=81.97  E-value=1.2  Score=30.44  Aligned_cols=91  Identities=21%  Similarity=0.116  Sum_probs=52.5

Q ss_pred             CCeEEEEcC-ChhHHHHHHHHHHcCC--CeEEEEcCCcchHHHHHhCCCce-eeCCCCCCCccHHHHHHhhhCCCCccEE
Q 024295           85 GSSVAVLGL-GTVGLGAVDGARMHGA--AKIIGIDKNPWKKEKGKAFGMTD-FINPDDEPNKSISELVKGITHGMGVDYC  160 (269)
Q Consensus        85 ~~~vlI~G~-g~~G~~a~~la~~~g~--~~v~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~i~~~~~~~~~d~v  160 (269)
                      |-+|.|+|+ |-+|.-.++++..+..  .++.....+...-+......... ..+..+   .+          ....|++
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~---~~----------~~~~d~~   67 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTE---TA----------FEGVDIA   67 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCT---TT----------TTTCSEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccch---hh----------hhhhhhh
Confidence            347999997 9999999999987743  24444442211111111111111 111111   11          1378999


Q ss_pred             EEccCChhHHHHHHHHcccCCcEEEEEcc
Q 024295          161 FECTGVPSLLSEALETTKVGKGKVIVIGV  189 (269)
Q Consensus       161 ~d~~g~~~~~~~~~~~l~~~~G~~v~~g~  189 (269)
                      |-+.+...+.....+....+ -+++..+.
T Consensus        68 f~~~~~~~s~~~~~~~~~~~-~~VIDlSs   95 (154)
T d2gz1a1          68 LFSAGSSTSAKYAPYAVKAG-VVVVDNTS   95 (154)
T ss_dssp             EECSCHHHHHHHHHHHHHTT-CEEEECSS
T ss_pred             hhccCccchhhHHhhhcccc-ceehhcCh
Confidence            99998776666666677775 78888763

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.25  E-value=1.3  Score=29.83  Aligned_cols=37  Identities=27%  Similarity=0.444  Sum_probs=28.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHcCC-CeEEEEcCCcchHH
Q 024295           87 SVAVLGLGTVGLGAVDGARMHGA-AKIIGIDKNPWKKE  123 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g~-~~v~~~~~~~~~~~  123 (269)
                      +|.|+|+|.+|......+...+. .++..+|.++++.+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~   39 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAE   39 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccccccc
Confidence            57889999999988776666553 48999998775544

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.76  E-value=1.3  Score=29.82  Aligned_cols=36  Identities=17%  Similarity=0.126  Sum_probs=28.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHcC-CCeEEEEcCCcchH
Q 024295           87 SVAVLGLGTVGLGAVDGARMHG-AAKIIGIDKNPWKK  122 (269)
Q Consensus        87 ~vlI~G~g~~G~~a~~la~~~g-~~~v~~~~~~~~~~  122 (269)
                      +|.|+|+|.+|...+..+...+ +..+..+|.++++.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~   38 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLA   38 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchh
Confidence            5788999999998877777665 45899999887664

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.69  E-value=5.8  Score=30.12  Aligned_cols=108  Identities=16%  Similarity=0.126  Sum_probs=56.1

Q ss_pred             HHHhcCCCCCCeEEEEcCChhHHHHHHHHHHc----CC------CeEEEEcCC----cchHHHH---HhCCCceeeCCCC
Q 024295           76 AWKEAKVEKGSSVAVLGLGTVGLGAVDGARMH----GA------AKIIGIDKN----PWKKEKG---KAFGMTDFINPDD  138 (269)
Q Consensus        76 l~~~~~~~~~~~vlI~G~g~~G~~a~~la~~~----g~------~~v~~~~~~----~~~~~~~---~~~g~~~v~~~~~  138 (269)
                      +....+--.+.+|++.|+|+.|.....++...    |.      ++++.+|+.    +++.+.+   ++.-+.   +..+
T Consensus        16 lki~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~---~~~~   92 (294)
T d1pj3a1          16 QKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTH---SAPE   92 (294)
T ss_dssp             HHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCB---CCCS
T ss_pred             HHHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhc---cccc
Confidence            33333334578899999988777766665433    32      369999863    2222211   111111   1111


Q ss_pred             CCCccHHHHHHhhhCCCCccEEEEccCChhH-HHHHHH---HcccCCcEEEEEccCC
Q 024295          139 EPNKSISELVKGITHGMGVDYCFECTGVPSL-LSEALE---TTKVGKGKVIVIGVGV  191 (269)
Q Consensus       139 ~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~-~~~~~~---~l~~~~G~~v~~g~~~  191 (269)
                      ....++.+.++..    +.|++|-+++.+.. -++.++   .+.+. =.+.-++.+.
T Consensus        93 ~~~~~L~e~i~~~----kptvliG~S~~~g~ft~evi~~Ma~~~~~-PIIFaLSNPt  144 (294)
T d1pj3a1          93 SIPDTFEDAVNIL----KPSTIIGVAGAGRLFTPDVIRAMASINER-PVIFALSNPT  144 (294)
T ss_dssp             SCCSSHHHHHHHH----CCSEEEECCCSSCCSCHHHHHHHHHHCSS-CEEEECCSSG
T ss_pred             cchhHHHHHHHhc----CCceEEEecCCCCcCCHHHHHHHHhcCCC-cEEEEccCCC
Confidence            0013466655544    67888888754322 233443   33453 5666666665

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=80.63  E-value=0.7  Score=33.96  Aligned_cols=33  Identities=27%  Similarity=0.267  Sum_probs=25.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHcCCCeEEEEcCC
Q 024295           86 SSVAVLGLGTVGLGAVDGARMHGAAKIIGIDKN  118 (269)
Q Consensus        86 ~~vlI~G~g~~G~~a~~la~~~g~~~v~~~~~~  118 (269)
                      --|+|+|+|+-|+.|+..+...|.++|..++..
T Consensus         4 YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~   36 (240)
T d1feca1           4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQ   36 (240)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESC
T ss_pred             cCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEe
Confidence            347888999999998877777776578777643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=80.51  E-value=1.4  Score=28.98  Aligned_cols=61  Identities=13%  Similarity=0.063  Sum_probs=43.7

Q ss_pred             HHhcCCCCCCeEEEE-cCC-hhHHHHHHHHHHcCCCeEEEEcCCcchHHHHHhCCCceeeCCC
Q 024295           77 WKEAKVEKGSSVAVL-GLG-TVGLGAVDGARMHGAAKIIGIDKNPWKKEKGKAFGMTDFINPD  137 (269)
Q Consensus        77 ~~~~~~~~~~~vlI~-G~g-~~G~~a~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~v~~~~  137 (269)
                      ...+++...+.+++. +.- ..-.++...++..+..++++...+++..+.++++|++.++++.
T Consensus        57 l~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vi~p~  119 (134)
T d2hmva1          57 LLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPE  119 (134)
T ss_dssp             HHHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECHH
T ss_pred             hhccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHCCCCEEEChH
Confidence            345666666665554 433 4445566666777877899999888889999999999998754