Citrus Sinensis ID: 024298
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 269 | 2.2.26 [Sep-21-2011] | |||||||
| Q8RXN4 | 409 | 3-hydroxyisobutyryl-CoA h | yes | no | 0.832 | 0.547 | 0.699 | 5e-91 | |
| Q5XF59 | 401 | 3-hydroxyisobutyryl-CoA h | no | no | 0.728 | 0.488 | 0.621 | 5e-63 | |
| Q6NMB0 | 378 | Probable 3-hydroxyisobuty | no | no | 0.728 | 0.518 | 0.494 | 2e-53 | |
| Q9LKJ1 | 378 | 3-hydroxyisobutyryl-CoA h | no | no | 0.728 | 0.518 | 0.489 | 5e-52 | |
| Q1PEY5 | 378 | Probable 3-hydroxyisobuty | no | no | 0.702 | 0.5 | 0.473 | 2e-47 | |
| A2VDC2 | 385 | 3-hydroxyisobutyryl-CoA h | N/A | no | 0.773 | 0.540 | 0.397 | 8e-36 | |
| Q5ZJ60 | 385 | 3-hydroxyisobutyryl-CoA h | yes | no | 0.669 | 0.467 | 0.408 | 1e-35 | |
| Q28FR6 | 385 | 3-hydroxyisobutyryl-CoA h | yes | no | 0.609 | 0.425 | 0.447 | 8e-35 | |
| O74802 | 429 | 3-hydroxyisobutyryl-CoA h | yes | no | 0.802 | 0.503 | 0.362 | 3e-34 | |
| Q9SHJ8 | 387 | 3-hydroxyisobutyryl-CoA h | no | no | 0.661 | 0.459 | 0.408 | 4e-34 |
| >sp|Q8RXN4|HIBC5_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial OS=Arabidopsis thaliana GN=At4g31810 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 334 bits (856), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 158/226 (69%), Positives = 190/226 (84%), Gaps = 2/226 (0%)
Query: 1 MQRIKSLLRIKHSFKQVAFVSHQQRSFSALPDYSSNDY-LQDQVLVEGRAKSRAAILNRP 59
MQ +K+L R+ + V VS+ +R FSALP+YS++D +DQVLVEG+AKSRAAILN P
Sbjct: 1 MQTVKALRRVSEPLQWVRSVSYGRR-FSALPNYSASDADFEDQVLVEGKAKSRAAILNNP 59
Query: 60 SNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119
S+LNAL+ MVGRLKRLYESWEENP I FVLMKG+G+ FCSG DV++LY +NEG E+
Sbjct: 60 SSLNALSAPMVGRLKRLYESWEENPAISFVLMKGSGKTFCSGADVLSLYHSINEGNTEES 119
Query: 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGF 179
K FFE LY+FVYLQGT++KP++AI+DG+TMGCG GISL GM+RV TDKTV ++PE Q+GF
Sbjct: 120 KLFFENLYKFVYLQGTYLKPNIAIMDGVTMGCGGGISLPGMFRVATDKTVLAHPEVQIGF 179
Query: 180 HPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNG 225
HPDAGAS+YLS LPGYLGEYLALTG+KLNGVEMIACGLATHY LN
Sbjct: 180 HPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLNA 225
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Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: - |
| >sp|Q5XF59|HIBC4_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 1, mitochondrial OS=Arabidopsis thaliana GN=At3g60510 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (615), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 123/198 (62%), Positives = 155/198 (78%), Gaps = 2/198 (1%)
Query: 24 QRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEEN 83
+RS +L +S D L QVLVEG SR AILNRP LNAL T M RL++LY++WEE+
Sbjct: 22 RRSLCSL-KLTSED-LDYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEED 79
Query: 84 PDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143
P+IGFV+MKG+GRAFC+GGD+++LY L G + + FF +LY F+YL GT++KPHVAI
Sbjct: 80 PNIGFVMMKGSGRAFCAGGDIVSLYHLRTRGSPDAIREFFSSLYSFIYLLGTYLKPHVAI 139
Query: 144 LDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALT 203
L+G+TMG G G+S+ G +RV TD+T+F+ PET +GFHPDAGASF LSHLPG LGEYL LT
Sbjct: 140 LNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEYLGLT 199
Query: 204 GEKLNGVEMIACGLATHY 221
G KL+G EM+ACGLATHY
Sbjct: 200 GLKLSGAEMLACGLATHY 217
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: . EC: - |
| >sp|Q6NMB0|HIBC3_ARATH Probable 3-hydroxyisobutyryl-CoA hydrolase 3 OS=Arabidopsis thaliana GN=At2g30660 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 98/198 (49%), Positives = 137/198 (69%), Gaps = 2/198 (1%)
Query: 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFC 99
Q QVLVE ++ R LNRP LNAL +M+ RL +L+ ++EE+P + V++KG GRAFC
Sbjct: 4 QSQVLVEEKSSVRILTLNRPKQLNALCFNMISRLLQLFRAYEEDPSVKLVILKGQGRAFC 63
Query: 100 SGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQG 159
+GGDV + Q + +GK+ +FF Y Y+ T+ KP V+IL+GI MG GAG+S+ G
Sbjct: 64 AGGDVPPVVQNMVQGKWRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSIHG 123
Query: 160 MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLAT 219
+R+ T+ TVF+ PET +G PD GAS++LS LPG+ GEY+ LTG +L+G E++ACGLAT
Sbjct: 124 RFRIATENTVFAMPETSLGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAELLACGLAT 183
Query: 220 HYTLNGVRYTALYFTSLC 237
H+ + R TAL T LC
Sbjct: 184 HF-VPSTRLTALE-TDLC 199
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Involved in valine catabolism. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q9LKJ1|HIBC1_ARATH 3-hydroxyisobutyryl-CoA hydrolase 1 OS=Arabidopsis thaliana GN=CHY1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (519), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 97/198 (48%), Positives = 137/198 (69%), Gaps = 2/198 (1%)
Query: 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFC 99
Q QVLVE ++ R LNRP LNAL+ M+ RL +L+ ++EE+P + V++KG GRAFC
Sbjct: 8 QSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFC 67
Query: 100 SGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQG 159
+GGDV A+ + +N+G + N+F + Y Y+ T+ K V+IL+GI MG GAG+S+ G
Sbjct: 68 AGGDVAAVVRDINQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHG 127
Query: 160 MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLAT 219
+R+ T+ TVF+ PET +G PD GAS++LS LPG+ GEY+ LTG +L+G EM+ACGLAT
Sbjct: 128 RFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLAT 187
Query: 220 HYTLNGVRYTALYFTSLC 237
H+ + R TAL LC
Sbjct: 188 HF-VPSTRLTALE-ADLC 203
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Involved in valine catabolism. May be indirectly involved in benzoic acid biosynthesis and in cold signaling and cold tolerance. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q1PEY5|HIBC2_ARATH Probable 3-hydroxyisobutyryl-CoA hydrolase 2 OS=Arabidopsis thaliana GN=At2g30650 PE=2 SV=1 | Back alignment and function description |
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Score = 189 bits (481), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/190 (47%), Positives = 130/190 (68%), Gaps = 1/190 (0%)
Query: 42 QVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSG 101
QVLVE ++ R NRP LNAL+ MV RL +L+ ++EE+P + V++KG GRAF +G
Sbjct: 6 QVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAG 65
Query: 102 GDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMY 161
GD+ + + + +GK ++F+ Y Y+ T+ KP V+IL+GI MG GAG+S G +
Sbjct: 66 GDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGRF 125
Query: 162 RVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 221
R+ T+ TVF+ PET +G PD GAS++LS LPG+ GEY+ LTG +L+G EM+ACGLATH+
Sbjct: 126 RIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHF 185
Query: 222 TLNGVRYTAL 231
+ + TAL
Sbjct: 186 -VPSISLTAL 194
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Involved in valine catabolism. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 |
| >sp|A2VDC2|HIBCH_XENLA 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus laevis GN=hibch PE=2 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 132/224 (58%), Gaps = 16/224 (7%)
Query: 3 RIKSLLRIKHSFKQVAFVSHQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAI-LNRPSN 61
R++S LR+K F ++ + R SN ++D + +A I LNRP
Sbjct: 5 RLESQLRLK-VFGRLQVIRQHLRM--------SNHTVKDGGCLLTKAGCAGVITLNRPKA 55
Query: 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFED-- 118
LNALN M+ ++ + WEE+P+ V++KGAG +AFC+GGD+ A+ + GK D
Sbjct: 56 LNALNLGMIRQIYPQLKLWEEDPETYLVIIKGAGGKAFCAGGDIRAVT---DAGKVGDRL 112
Query: 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMG 178
++FF Y GT KP+VA++DGITMG G G+S+ G +RV ++KT+F+ PET +G
Sbjct: 113 AQDFFREEYILNNAIGTCKKPYVAVIDGITMGGGVGLSVHGHFRVASEKTLFAMPETAIG 172
Query: 179 FHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYT 222
PD G ++L L G LG YLALTG +L G ++ G+ATH+
Sbjct: 173 LFPDVGGGYFLPRLTGKLGLYLALTGFRLKGSDVQKAGIATHFV 216
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Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA. Xenopus laevis (taxid: 8355) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q5ZJ60|HIBCH_CHICK 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 119/186 (63%), Gaps = 6/186 (3%)
Query: 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSG 101
VL++ + + LNRP LNAL+ M+ ++ ++WE++P+ +++KG G +AFC+G
Sbjct: 37 VLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKAWEQDPETFLIIIKGTGEKAFCAG 96
Query: 102 GDVIALYQLLNEGKFEDF--KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQG 159
GDV A+ + GK D +++F Y+ GT KP+VA++DGITMG G G+S+ G
Sbjct: 97 GDVRAIA---DAGKAGDTMTRDYFREEYRLDNAIGTCKKPYVALIDGITMGGGVGLSVHG 153
Query: 160 MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLAT 219
+RV T+KTVF+ PET +G PD G ++L L G +G LALTG +L G +++ G+AT
Sbjct: 154 HFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKIGHLLALTGFRLKGRDVLKAGIAT 213
Query: 220 HYTLNG 225
H+ +G
Sbjct: 214 HFVESG 219
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Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA. Gallus gallus (taxid: 9031) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q28FR6|HIBCH_XENTR 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis GN=hibch PE=2 SV=1 | Back alignment and function description |
|---|
Score = 147 bits (371), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 76/170 (44%), Positives = 108/170 (63%), Gaps = 6/170 (3%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG-AGRAFCSGGDVIALYQLLNEG 114
LNRP LNALN M+ + WEE+P+ V++KG G+AFC+GGD+ A+ + G
Sbjct: 50 LNRPKALNALNLGMIRLIYPQLGLWEEDPETYLVIIKGVGGKAFCAGGDIRAVT---DAG 106
Query: 115 KFED--FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSN 172
K D ++FF Y GT+ KP+VA++DGITMG G G+S+ G +RV ++ T+F+
Sbjct: 107 KAGDRLAQDFFREEYILNNAIGTYKKPYVALIDGITMGGGVGLSVHGHFRVASENTLFAM 166
Query: 173 PETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYT 222
PET +G PD G ++L LPG LG YLALTG +L G ++ G+ATH+
Sbjct: 167 PETAIGLFPDVGGGYFLPRLPGKLGLYLALTGFRLKGSDVQKAGIATHFV 216
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Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has high activity toward isobutyryl-CoA. Could be an isobutyryl-CoA dehydrogenase that functions in valine catabolism. Also hydrolyzes 3-hydroxypropanoyl-CoA. Xenopus tropicalis (taxid: 8364) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 |
| >sp|O74802|HIBCH_SCHPO 3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ehd3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (366), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 124/218 (56%), Gaps = 2/218 (0%)
Query: 5 KSLLRIKHS-FKQVAFVSHQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNRPSNLN 63
+SLL+ S F + S R+F P + S D VL E + +R LNRP LN
Sbjct: 20 QSLLKTSVSNFLSLNASSTMSRAFIRNPKFYSTSS-NDTVLYESKNGARIFTLNRPKVLN 78
Query: 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFF 123
A+N M+ + S EE+ +++KG GR+F SGGD+ A + +GK + ++ F
Sbjct: 79 AINVDMIDSILPKLVSLEESNLAKVIILKGNGRSFSSGGDIKAAALSIQDGKLPEVRHAF 138
Query: 124 ETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDA 183
Y+ + T+ KP VA+++GITMG G+G+++ +R+ + T+F+ PET +G+ D
Sbjct: 139 AQEYRLSHTLATYQKPVVALMNGITMGGGSGLAMHVPFRIACEDTMFAMPETGIGYFTDV 198
Query: 184 GASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 221
ASF+ S LPGY G YL LT + + G + + G+ATH+
Sbjct: 199 AASFFFSRLPGYFGTYLGLTSQIVKGYDCLRTGIATHF 236
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Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite. Has an indirect role in endocytic membrane trafficking. May have a function in protein biosynthesis in mitochondrial small ribosomal subunit. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q9SHJ8|HIBC8_ARATH 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 OS=Arabidopsis thaliana GN=At1g06550 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 145 bits (365), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 113/186 (60%), Gaps = 8/186 (4%)
Query: 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGG 102
V+ E + R LNRP LN ++ +V +L E WE++ +L+KG GRAF +GG
Sbjct: 13 VIGEEKGSVRLTTLNRPRQLNVISPEVVFKLAEYLELWEKDDQTKLILIKGTGRAFSAGG 72
Query: 103 DVIALYQLLNEGKFEDFKNFFETLYQFVYL---QGTFVKPHVAILDGITMGCGAGISLQG 159
D+ Y G+ E + E +Y+ +L T+ K V++++GI+MG GA + +
Sbjct: 73 DLKVFYH----GQ-ESKDSCLEVVYRMYWLCYHIHTYKKTQVSLVNGISMGGGAALMVPM 127
Query: 160 MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLAT 219
+ VVT+KTVF+ PE GFH D G S+ S LPG+LGE+LALTG +LNG E++A G+AT
Sbjct: 128 KFSVVTEKTVFATPEASFGFHTDCGFSYIHSRLPGHLGEFLALTGARLNGKELVAIGMAT 187
Query: 220 HYTLNG 225
H+ +G
Sbjct: 188 HFVPSG 193
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 269 | ||||||
| 255548740 | 406 | Enoyl-CoA hydratase, mitochondrial precu | 0.832 | 0.551 | 0.730 | 2e-96 | |
| 225430480 | 407 | PREDICTED: 3-hydroxyisobutyryl-CoA hydro | 0.832 | 0.550 | 0.753 | 3e-95 | |
| 356552416 | 407 | PREDICTED: 3-hydroxyisobutyryl-CoA hydro | 0.832 | 0.550 | 0.731 | 1e-92 | |
| 363807438 | 407 | uncharacterized protein LOC100808892 [Gl | 0.832 | 0.550 | 0.718 | 1e-90 | |
| 449531651 | 264 | PREDICTED: 3-hydroxyisobutyryl-CoA hydro | 0.828 | 0.844 | 0.736 | 4e-90 | |
| 449455517 | 404 | PREDICTED: 3-hydroxyisobutyryl-CoA hydro | 0.832 | 0.554 | 0.733 | 5e-90 | |
| 357437163 | 409 | 3-hydroxyisobutyryl-CoA hydrolase-like p | 0.828 | 0.545 | 0.729 | 5e-90 | |
| 22329062 | 409 | 3-hydroxyisobutyryl-CoA hydrolase-like p | 0.832 | 0.547 | 0.699 | 3e-89 | |
| 297798788 | 409 | enoyl-CoA hydratase/isomerase family pro | 0.832 | 0.547 | 0.694 | 4e-89 | |
| 255541138 | 415 | catalytic, putative [Ricinus communis] g | 0.806 | 0.522 | 0.65 | 2e-81 |
| >gi|255548740|ref|XP_002515426.1| Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis] gi|223545370|gb|EEF46875.1| Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 358 bits (918), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 165/226 (73%), Positives = 197/226 (87%), Gaps = 2/226 (0%)
Query: 1 MQRIKSLLRIKHSFK-QVAFVSHQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNRP 59
MQR+ L++++H ++ F+S R FSALP+Y+ ND LQDQVLVEGRAKSRAAILNRP
Sbjct: 1 MQRVNQLVKVRHLVNSRIGFLS-TPREFSALPNYAQNDDLQDQVLVEGRAKSRAAILNRP 59
Query: 60 SNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119
S+LN+L M+ RLKRLYESWEENPDIGFVLMKG+GRAFCSG DV++L +L+NEG+ ++
Sbjct: 60 SSLNSLTEPMLARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLSELVNEGRVDEC 119
Query: 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGF 179
K+FF+ LY+F YLQGT++KPHVAILDGITMGCGAGISL GM+ +VTDKTVF++PE QMGF
Sbjct: 120 KSFFQILYKFAYLQGTYLKPHVAILDGITMGCGAGISLPGMFSIVTDKTVFAHPEAQMGF 179
Query: 180 HPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNG 225
HPDAGAS+YLS LPGYLGEYLALTG+KLNG EMIACGLATHYTLN
Sbjct: 180 HPDAGASYYLSRLPGYLGEYLALTGDKLNGAEMIACGLATHYTLNA 225
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430480|ref|XP_002283319.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial [Vitis vinifera] gi|296082135|emb|CBI21140.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 354 bits (908), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 171/227 (75%), Positives = 195/227 (85%), Gaps = 3/227 (1%)
Query: 1 MQRIKSLLR--IKHSFKQVAFVSHQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNR 58
MQR K++L ++ S ++ SH RSFSALP+Y+ ND LQ+QVLVEGRAKSRAAILNR
Sbjct: 1 MQRAKAVLSPAVRCSLQRFGVFSHH-RSFSALPNYARNDDLQEQVLVEGRAKSRAAILNR 59
Query: 59 PSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118
PS+LNAL MV RLKRLYESWEEN D+GFV+MKG+GRA CSGGDV+AL QL+NEGK E+
Sbjct: 60 PSDLNALTIPMVARLKRLYESWEENSDLGFVIMKGSGRALCSGGDVVALNQLINEGKVEE 119
Query: 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMG 178
K FFETLY+FVYL GT+VKP+VAI+DGITMG GAGIS+ M+RVVTDKTVF+ PETQMG
Sbjct: 120 CKKFFETLYKFVYLLGTYVKPNVAIVDGITMGGGAGISIPAMFRVVTDKTVFATPETQMG 179
Query: 179 FHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNG 225
FHPDAGASFYLS LPGYLGEYLALTGEKLNGVEMIACGLATHY+L
Sbjct: 180 FHPDAGASFYLSRLPGYLGEYLALTGEKLNGVEMIACGLATHYSLTA 226
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552416|ref|XP_003544564.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 166/227 (73%), Positives = 193/227 (85%), Gaps = 3/227 (1%)
Query: 1 MQRIKSLLRIKHSFKQVAFVSHQQRSFSALPDYSS--NDYLQDQVLVEGRAKSRAAILNR 58
MQR K+LL + F SH+ R+FSA P+YS +D Q+Q+LVEGRAKSRAAILNR
Sbjct: 1 MQRFKALLPQQTRSSLRTFCSHR-RAFSAQPNYSEHHDDDSQEQILVEGRAKSRAAILNR 59
Query: 59 PSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118
PS+LN+LN SMV RLKRLY+SWEEN DIGFVLMKG+GRAFCSG DV+ LYQ LNEG ++
Sbjct: 60 PSSLNSLNASMVARLKRLYDSWEENSDIGFVLMKGSGRAFCSGADVVRLYQSLNEGNTDE 119
Query: 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMG 178
+ FF+TLY FVYLQGT++KPHVAILDGITMGCG+GISL GM+RVVTDKT+FS+PETQ+G
Sbjct: 120 AEQFFKTLYSFVYLQGTYLKPHVAILDGITMGCGSGISLPGMFRVVTDKTIFSHPETQIG 179
Query: 179 FHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNG 225
FHPDAGAS+ LS LPGYLGEYLALTG+KLNGVEMIAC LATHY+LN
Sbjct: 180 FHPDAGASYILSRLPGYLGEYLALTGDKLNGVEMIACRLATHYSLNA 226
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363807438|ref|NP_001242643.1| uncharacterized protein LOC100808892 [Glycine max] gi|255634881|gb|ACU17799.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 163/227 (71%), Positives = 190/227 (83%), Gaps = 3/227 (1%)
Query: 1 MQRIKSLLRIKHSFKQVAFVSHQQRSFSALPDYSS--NDYLQDQVLVEGRAKSRAAILNR 58
MQR K+LL + SH+ R+FSA P+Y+ +D Q+Q+LVEGRAKSRAAILNR
Sbjct: 1 MQRFKALLPQQTRSSLRTLCSHR-RAFSAQPNYAKHHDDDSQEQILVEGRAKSRAAILNR 59
Query: 59 PSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118
PS+LN+LN SMV RLKRLY+SWEEN DIGFVLMKG+GRAFCSG DV+ LY LNEG ++
Sbjct: 60 PSSLNSLNASMVARLKRLYDSWEENSDIGFVLMKGSGRAFCSGADVVRLYHSLNEGNTDE 119
Query: 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMG 178
+ FF+TLY FVYLQGT++KPHVAILDGITMGCG+GISL GM+RVVTDKTVFS+PE Q+G
Sbjct: 120 AEQFFKTLYSFVYLQGTYLKPHVAILDGITMGCGSGISLPGMFRVVTDKTVFSHPEAQIG 179
Query: 179 FHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNG 225
FHPDAGAS+ LS LPGYLGEYLALTG+KLNGVEMIAC LATHY+LN
Sbjct: 180 FHPDAGASYVLSRLPGYLGEYLALTGDKLNGVEMIACRLATHYSLNA 226
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449531651|ref|XP_004172799.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 337 bits (863), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 165/224 (73%), Positives = 189/224 (84%), Gaps = 1/224 (0%)
Query: 1 MQRIKSLLRIKHSFKQVAFVSHQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNRPS 60
MQR+K+L ++ S Q + S+ +RSFSALP+Y+ D L DQV+VEG+ SRAAILNRPS
Sbjct: 1 MQRLKALEALRRSSFQSS-FSNLKRSFSALPNYAQTDDLSDQVMVEGKPNSRAAILNRPS 59
Query: 61 NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120
LNAL TSMV RL RLYESWEEN IGFVLMKG+GRAFCSG DV+ALY L NEG ED K
Sbjct: 60 ALNALTTSMVARLNRLYESWEENSSIGFVLMKGSGRAFCSGADVVALYNLSNEGNIEDCK 119
Query: 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFH 180
FFETLY+FVYLQGT++KPHVA+LDGI MG GAGI L G++R+VT+KTVFS+PE QMGFH
Sbjct: 120 KFFETLYKFVYLQGTYLKPHVALLDGIMMGAGAGIVLPGLFRLVTNKTVFSHPEVQMGFH 179
Query: 181 PDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLN 224
PDAGASFYLS LPGYLGEYLALTG+KLNGVEMIACGLATHY+L
Sbjct: 180 PDAGASFYLSRLPGYLGEYLALTGDKLNGVEMIACGLATHYSLT 223
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449455517|ref|XP_004145499.1| PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 337 bits (863), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 165/225 (73%), Positives = 189/225 (84%), Gaps = 1/225 (0%)
Query: 1 MQRIKSLLRIKHSFKQVAFVSHQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNRPS 60
MQR+K+L ++ S Q + S+ +RSFSALP+Y+ D L DQV+VEG+ SRAAILNRPS
Sbjct: 1 MQRLKALEALRRSSFQSS-FSNLKRSFSALPNYAQTDDLSDQVMVEGKPNSRAAILNRPS 59
Query: 61 NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120
LNAL TSMV RL RLYESWEEN IGFVLMKG+GRAFCSG DV+ALY L NEG ED K
Sbjct: 60 ALNALTTSMVARLNRLYESWEENSSIGFVLMKGSGRAFCSGADVVALYNLSNEGNIEDCK 119
Query: 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFH 180
FFETLY+FVYLQGT++KPHVA+LDGI MG GAGI L G++R+VT+KTVFS+PE QMGFH
Sbjct: 120 KFFETLYKFVYLQGTYLKPHVALLDGIMMGAGAGIVLPGLFRLVTNKTVFSHPEVQMGFH 179
Query: 181 PDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNG 225
PDAGASFYLS LPGYLGEYLALTG+KLNGVEMIACGLATHY+L
Sbjct: 180 PDAGASFYLSRLPGYLGEYLALTGDKLNGVEMIACGLATHYSLTA 224
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357437163|ref|XP_003588857.1| 3-hydroxyisobutyryl-CoA hydrolase-like protein [Medicago truncatula] gi|355477905|gb|AES59108.1| 3-hydroxyisobutyryl-CoA hydrolase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 336 bits (862), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 167/229 (72%), Positives = 189/229 (82%), Gaps = 6/229 (2%)
Query: 1 MQRIKSLLRIKHSFKQVAFVSHQQRSFSALPDYSS-NDYLQD---QVLVEGRAKSRAAIL 56
MQR KSLL + F SH RSFSALP+Y+ ND +D Q+LVEGRAKSRAAIL
Sbjct: 1 MQRFKSLL-PQTRFSSRTLSSHP-RSFSALPNYAQRNDEEEDSQNQILVEGRAKSRAAIL 58
Query: 57 NRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKF 116
NRP++LNAL TSMV RLKRLY+SWEEN DIGFVLMKG G AFCSG DV+ LY LNEGK
Sbjct: 59 NRPASLNALTTSMVARLKRLYDSWEENSDIGFVLMKGRGSAFCSGADVVRLYHSLNEGKA 118
Query: 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ 176
E+ K FF+TLY FVYLQGT++KPHV+ILDG TMGCG+GISL GM+RVVTDKT+FS+PE Q
Sbjct: 119 EEAKEFFKTLYSFVYLQGTYLKPHVSILDGRTMGCGSGISLPGMFRVVTDKTIFSHPEAQ 178
Query: 177 MGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNG 225
+GFHPDAGAS+ LS LPGYLGEYLALTG+KLNGVEMIAC LATHY+LN
Sbjct: 179 IGFHPDAGASYLLSRLPGYLGEYLALTGDKLNGVEMIACNLATHYSLNA 227
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22329062|ref|NP_194909.2| 3-hydroxyisobutyryl-CoA hydrolase-like protein 2 [Arabidopsis thaliana] gi|75247660|sp|Q8RXN4.1|HIBC5_ARATH RecName: Full=3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial; Flags: Precursor gi|19424019|gb|AAL87270.1| putative enoyl-CoA hydratase [Arabidopsis thaliana] gi|21281145|gb|AAM45067.1| putative enoyl-CoA hydratase [Arabidopsis thaliana] gi|332660563|gb|AEE85963.1| 3-hydroxyisobutyryl-CoA hydrolase-like protein 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 334 bits (856), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 158/226 (69%), Positives = 190/226 (84%), Gaps = 2/226 (0%)
Query: 1 MQRIKSLLRIKHSFKQVAFVSHQQRSFSALPDYSSNDY-LQDQVLVEGRAKSRAAILNRP 59
MQ +K+L R+ + V VS+ +R FSALP+YS++D +DQVLVEG+AKSRAAILN P
Sbjct: 1 MQTVKALRRVSEPLQWVRSVSYGRR-FSALPNYSASDADFEDQVLVEGKAKSRAAILNNP 59
Query: 60 SNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119
S+LNAL+ MVGRLKRLYESWEENP I FVLMKG+G+ FCSG DV++LY +NEG E+
Sbjct: 60 SSLNALSAPMVGRLKRLYESWEENPAISFVLMKGSGKTFCSGADVLSLYHSINEGNTEES 119
Query: 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGF 179
K FFE LY+FVYLQGT++KP++AI+DG+TMGCG GISL GM+RV TDKTV ++PE Q+GF
Sbjct: 120 KLFFENLYKFVYLQGTYLKPNIAIMDGVTMGCGGGISLPGMFRVATDKTVLAHPEVQIGF 179
Query: 180 HPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNG 225
HPDAGAS+YLS LPGYLGEYLALTG+KLNGVEMIACGLATHY LN
Sbjct: 180 HPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLNA 225
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297798788|ref|XP_002867278.1| enoyl-CoA hydratase/isomerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297313114|gb|EFH43537.1| enoyl-CoA hydratase/isomerase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 333 bits (855), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 157/226 (69%), Positives = 190/226 (84%), Gaps = 2/226 (0%)
Query: 1 MQRIKSLLRIKHSFKQVAFVSHQQRSFSALPDYSSNDY-LQDQVLVEGRAKSRAAILNRP 59
MQ +K+L R+ + V VS+ RSFSALP+YS+ D ++DQVLVEG+AKSRAAILN P
Sbjct: 1 MQTVKALRRVTKPLQWVRSVSYG-RSFSALPNYSAADADIEDQVLVEGKAKSRAAILNSP 59
Query: 60 SNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119
S+LNAL+T MVGRLKRLYESWEENP I FVLMKG+G+ FCSG DV+ LY +NEG E+
Sbjct: 60 SSLNALSTPMVGRLKRLYESWEENPAISFVLMKGSGKTFCSGADVLPLYHSINEGNTEES 119
Query: 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGF 179
K FF+ LY+FVYLQGT++KP++AI+DG+TMGCG G+S+ GM+RV TDKTV ++PE Q+GF
Sbjct: 120 KLFFDNLYKFVYLQGTYLKPNIAIMDGVTMGCGGGVSIPGMFRVATDKTVLAHPEVQIGF 179
Query: 180 HPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNG 225
HPDAGAS+YLS LPGYLGEYLALTG+KLNGVEMIACGLATHY LN
Sbjct: 180 HPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLNA 225
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255541138|ref|XP_002511633.1| catalytic, putative [Ricinus communis] gi|223548813|gb|EEF50302.1| catalytic, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 143/220 (65%), Positives = 180/220 (81%), Gaps = 3/220 (1%)
Query: 6 SLLRIKHSFKQVAFVSH-QQRSFSALPDYSS--NDYLQDQVLVEGRAKSRAAILNRPSNL 62
SLL + ++ F++H ++ S++P+ +S +D L QVLVE +A SR AILNRPS L
Sbjct: 9 SLLIRRSKTERARFIAHSHNKNLSSIPNSNSTDDDDLDKQVLVESKAYSRTAILNRPSAL 68
Query: 63 NALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122
NALNT+M RL +LY+SWEENPD+GFV+MKG+GRAFC+GGD++ LY L+ +GK ED K F
Sbjct: 69 NALNTNMGARLLKLYKSWEENPDVGFVMMKGSGRAFCAGGDIVTLYNLVKKGKLEDCKEF 128
Query: 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPD 182
F TLY F+Y+ GT++KPHVAILDGITMG GAG+S+ G +R+ TDKTVF+ PET +GFHPD
Sbjct: 129 FRTLYTFIYILGTYLKPHVAILDGITMGGGAGVSIPGTFRIATDKTVFATPETLIGFHPD 188
Query: 183 AGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYT 222
AGASF+LSHLPG+LGEYLALTGE LNGVEMIACGLATHY+
Sbjct: 189 AGASFHLSHLPGHLGEYLALTGETLNGVEMIACGLATHYS 228
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 269 | ||||||
| TAIR|locus:2116797 | 409 | AT4G31810 [Arabidopsis thalian | 0.828 | 0.545 | 0.702 | 1.9e-83 | |
| TAIR|locus:2054437 | 378 | AT2G30660 [Arabidopsis thalian | 0.710 | 0.505 | 0.494 | 8.5e-49 | |
| TAIR|locus:2152069 | 378 | CHY1 "beta-hydroxyisobutyryl-C | 0.710 | 0.505 | 0.494 | 1.8e-48 | |
| TAIR|locus:2054517 | 378 | AT2G30650 [Arabidopsis thalian | 0.702 | 0.5 | 0.473 | 1.9e-44 | |
| WB|WBGene00017301 | 386 | F09F7.4 [Caenorhabditis elegan | 0.780 | 0.544 | 0.398 | 3.5e-36 | |
| ASPGD|ASPL0000005013 | 505 | AN6844 [Emericella nidulans (t | 0.795 | 0.423 | 0.394 | 5.1e-35 | |
| UNIPROTKB|F1P188 | 385 | HIBCH "3-hydroxyisobutyryl-CoA | 0.669 | 0.467 | 0.408 | 1.7e-34 | |
| UNIPROTKB|Q5ZJ60 | 385 | HIBCH "3-hydroxyisobutyryl-CoA | 0.669 | 0.467 | 0.408 | 1.7e-34 | |
| FB|FBgn0038326 | 386 | CG5044 [Drosophila melanogaste | 0.646 | 0.450 | 0.433 | 4.6e-34 | |
| POMBASE|SPBC2D10.09 | 429 | SPBC2D10.09 "3-hydroxyisobutyr | 0.802 | 0.503 | 0.362 | 1.2e-33 |
| TAIR|locus:2116797 AT4G31810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 836 (299.3 bits), Expect = 1.9e-83, P = 1.9e-83
Identities = 158/225 (70%), Positives = 190/225 (84%)
Query: 1 MQRIKSLLRIKHSFKQVAFVSHQQRSFSALPDYSSNDY-LQDQVLVEGRAKSRAAILNRP 59
MQ +K+L R+ + V VS+ +R FSALP+YS++D +DQVLVEG+AKSRAAILN P
Sbjct: 1 MQTVKALRRVSEPLQWVRSVSYGRR-FSALPNYSASDADFEDQVLVEGKAKSRAAILNNP 59
Query: 60 SNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119
S+LNAL+ MVGRLKRLYESWEENP I FVLMKG+G+ FCSG DV++LY +NEG E+
Sbjct: 60 SSLNALSAPMVGRLKRLYESWEENPAISFVLMKGSGKTFCSGADVLSLYHSINEGNTEES 119
Query: 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGF 179
K FFE LY+FVYLQGT++KP++AI+DG+TMGCG GISL GM+RV TDKTV ++PE Q+GF
Sbjct: 120 KLFFENLYKFVYLQGTYLKPNIAIMDGVTMGCGGGISLPGMFRVATDKTVLAHPEVQIGF 179
Query: 180 HPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLN 224
HPDAGAS+YLS LPGYLGEYLALTG+KLNGVEMIACGLATHY LN
Sbjct: 180 HPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLN 224
|
|
| TAIR|locus:2054437 AT2G30660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 95/192 (49%), Positives = 134/192 (69%)
Query: 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFC 99
Q QVLVE ++ R LNRP LNAL +M+ RL +L+ ++EE+P + V++KG GRAFC
Sbjct: 4 QSQVLVEEKSSVRILTLNRPKQLNALCFNMISRLLQLFRAYEEDPSVKLVILKGQGRAFC 63
Query: 100 SGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQG 159
+GGDV + Q + +GK+ +FF Y Y+ T+ KP V+IL+GI MG GAG+S+ G
Sbjct: 64 AGGDVPPVVQNMVQGKWRLGADFFRDQYTLNYVMATYSKPQVSILNGIVMGAGAGVSIHG 123
Query: 160 MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLAT 219
+R+ T+ TVF+ PET +G PD GAS++LS LPG+ GEY+ LTG +L+G E++ACGLAT
Sbjct: 124 RFRIATENTVFAMPETSLGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAELLACGLAT 183
Query: 220 HYTLNGVRYTAL 231
H+ + R TAL
Sbjct: 184 HF-VPSTRLTAL 194
|
|
| TAIR|locus:2152069 CHY1 "beta-hydroxyisobutyryl-CoA hydrolase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 95/192 (49%), Positives = 135/192 (70%)
Query: 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFC 99
Q QVLVE ++ R LNRP LNAL+ M+ RL +L+ ++EE+P + V++KG GRAFC
Sbjct: 8 QSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFC 67
Query: 100 SGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQG 159
+GGDV A+ + +N+G + N+F + Y Y+ T+ K V+IL+GI MG GAG+S+ G
Sbjct: 68 AGGDVAAVVRDINQGNWRLGANYFSSEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHG 127
Query: 160 MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLAT 219
+R+ T+ TVF+ PET +G PD GAS++LS LPG+ GEY+ LTG +L+G EM+ACGLAT
Sbjct: 128 RFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLAT 187
Query: 220 HYTLNGVRYTAL 231
H+ + R TAL
Sbjct: 188 HF-VPSTRLTAL 198
|
|
| TAIR|locus:2054517 AT2G30650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 90/190 (47%), Positives = 130/190 (68%)
Query: 42 QVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSG 101
QVLVE ++ R NRP LNAL+ MV RL +L+ ++EE+P + V++KG GRAF +G
Sbjct: 6 QVLVEEKSSVRILTFNRPKQLNALSFHMVSRLLQLFLAYEEDPSVKLVVLKGQGRAFSAG 65
Query: 102 GDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMY 161
GD+ + + + +GK ++F+ Y Y+ T+ KP V+IL+GI MG GAG+S G +
Sbjct: 66 GDIPPIVRDILQGKLIRGAHYFKVGYTLNYVLSTYRKPQVSILNGIVMGGGAGLSTNGRF 125
Query: 162 RVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 221
R+ T+ TVF+ PET +G PD GAS++LS LPG+ GEY+ LTG +L+G EM+ACGLATH+
Sbjct: 126 RIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLATHF 185
Query: 222 TLNGVRYTAL 231
+ + TAL
Sbjct: 186 -VPSISLTAL 194
|
|
| WB|WBGene00017301 F09F7.4 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 90/226 (39%), Positives = 130/226 (57%)
Query: 1 MQRIKSLLRIKHSFKQVAFVSHQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNRPS 60
++ + +L R HS K+V Q+ SFS S ++LV+ + LNRP
Sbjct: 5 VRNLPALFRGLHS-KEVC----QKMSFSVSAAAKS------EILVDTHGSKKVVTLNRPK 53
Query: 61 NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNE---GK- 115
LNALN MV ++W + D+ V++KG+G +AFC+GGDV+A+ + + GK
Sbjct: 54 ALNALNLEMVREFYPKLQAWNSSSDVDLVILKGSGDKAFCAGGDVLAVVRSFKDSESGKE 113
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
K+FF Y +L GT K +V ++DGI MG G G+S+ G +RV T+KT+ + PET
Sbjct: 114 CTMHKDFFREEYILNHLIGTLNKQYVCLIDGIVMGGGCGLSVNGRFRVATEKTMLAMPET 173
Query: 176 QMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 221
+G PD G S++LS L G LG YLALTG +L G + GLATH+
Sbjct: 174 ALGLFPDVGGSYFLSRLKGNLGMYLALTGYRLLGADAFHAGLATHF 219
|
|
| ASPGD|ASPL0000005013 AN6844 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 88/223 (39%), Positives = 128/223 (57%)
Query: 6 SLLRIKHSFKQVAFVSHQQRSFSALPDYSSNDYLQ--DQVLVEGRAKSRAAILNRPSNLN 63
S + ++ F + S ++ PD + D VL R LNRP LN
Sbjct: 23 STMPLRAKVTNPGFAATSNMSTASNPDIPKAQHGDEPDDVLFNSLFGVRLVELNRPKKLN 82
Query: 64 ALNTSMVGR-LKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFK- 120
+LN SMV + L RL E WE++ +++ GAG +A C+GGDV AL L NE E +
Sbjct: 83 SLNGSMVRKILPRLKE-WEKSQLANIIMVAGAGTKALCAGGDVAAL-ALQNEKGPEGQQA 140
Query: 121 --NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMG 178
+FF Y+ ++ T+ KP ++++DGITMG G G+S+ +R+ T++TVF+ PET +G
Sbjct: 141 STDFFGLEYKLDHVIATYSKPFISVMDGITMGGGVGLSVHAPFRIATERTVFAMPETTIG 200
Query: 179 FHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 221
F PD G SF+L L G +G YLALT +L GV+ + G+ATHY
Sbjct: 201 FFPDVGGSFFLPRLDGEIGTYLALTSARLTGVQALYAGIATHY 243
|
|
| UNIPROTKB|F1P188 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 76/186 (40%), Positives = 119/186 (63%)
Query: 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSG 101
VL++ + + LNRP LNAL+ M+ ++ ++WE++P+ +++KG G +AFC+G
Sbjct: 37 VLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKAWEQDPETFLIIIKGTGEKAFCAG 96
Query: 102 GDVIALYQLLNEGKFEDF--KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQG 159
GDV A+ + GK D +++F Y+ GT KP+VA++DGITMG G G+S+ G
Sbjct: 97 GDVRAI---ADAGKAGDTMTRDYFREEYRLDNAIGTCKKPYVALIDGITMGGGVGLSVHG 153
Query: 160 MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLAT 219
+RV T+KTVF+ PET +G PD G ++L L G +G LALTG +L G +++ G+AT
Sbjct: 154 HFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKIGHLLALTGFRLKGRDVLKAGIAT 213
Query: 220 HYTLNG 225
H+ +G
Sbjct: 214 HFVESG 219
|
|
| UNIPROTKB|Q5ZJ60 HIBCH "3-hydroxyisobutyryl-CoA hydrolase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 76/186 (40%), Positives = 119/186 (63%)
Query: 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSG 101
VL++ + + LNRP LNAL+ M+ ++ ++WE++P+ +++KG G +AFC+G
Sbjct: 37 VLLQKQGGAGIITLNRPKVLNALSFKMIQQIYPQIKAWEQDPETFLIIIKGTGEKAFCAG 96
Query: 102 GDVIALYQLLNEGKFEDF--KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQG 159
GDV A+ + GK D +++F Y+ GT KP+VA++DGITMG G G+S+ G
Sbjct: 97 GDVRAI---ADAGKAGDTMTRDYFREEYRLDNAIGTCKKPYVALIDGITMGGGVGLSVHG 153
Query: 160 MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLAT 219
+RV T+KTVF+ PET +G PD G ++L L G +G LALTG +L G +++ G+AT
Sbjct: 154 HFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKIGHLLALTGFRLKGRDVLKAGIAT 213
Query: 220 HYTLNG 225
H+ +G
Sbjct: 214 HFVESG 219
|
|
| FB|FBgn0038326 CG5044 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 78/180 (43%), Positives = 112/180 (62%)
Query: 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSG 101
VL + ILNRP LNA+N MV ++ + + E++ + V++KG G +AFC+G
Sbjct: 47 VLATESSNKGMIILNRPKALNAINLEMVRKIYKHLKKCEKSKSL--VIIKGTGDKAFCAG 104
Query: 102 GDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMY 161
GDV AL + G ++ K+FF Y L G + P++AI+DGITMG G G+S+ G Y
Sbjct: 105 GDVRALVEA---GPTDESKSFFREEYSTNALIGNYKIPYIAIIDGITMGGGVGLSVHGKY 161
Query: 162 RVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 221
RV +D+T+F+ PET +G PD G S++L L G LG YL LTG +L G ++ G+ATHY
Sbjct: 162 RVASDRTLFAMPETAIGLFPDVGGSYFLPRLQGKLGLYLGLTGYRLRGADVYYSGIATHY 221
|
|
| POMBASE|SPBC2D10.09 SPBC2D10.09 "3-hydroxyisobutyryl-CoA hydrolase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
Identities = 79/218 (36%), Positives = 124/218 (56%)
Query: 5 KSLLRIKHS-FKQVAFVSHQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNRPSNLN 63
+SLL+ S F + S R+F P + S D VL E + +R LNRP LN
Sbjct: 20 QSLLKTSVSNFLSLNASSTMSRAFIRNPKFYSTSS-NDTVLYESKNGARIFTLNRPKVLN 78
Query: 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFF 123
A+N M+ + S EE+ +++KG GR+F SGGD+ A + +GK + ++ F
Sbjct: 79 AINVDMIDSILPKLVSLEESNLAKVIILKGNGRSFSSGGDIKAAALSIQDGKLPEVRHAF 138
Query: 124 ETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDA 183
Y+ + T+ KP VA+++GITMG G+G+++ +R+ + T+F+ PET +G+ D
Sbjct: 139 AQEYRLSHTLATYQKPVVALMNGITMGGGSGLAMHVPFRIACEDTMFAMPETGIGYFTDV 198
Query: 184 GASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 221
ASF+ S LPGY G YL LT + + G + + G+ATH+
Sbjct: 199 AASFFFSRLPGYFGTYLGLTSQIVKGYDCLRTGIATHF 236
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.2 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 269 | |||
| PLN02851 | 407 | PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrol | 1e-143 | |
| PLN02157 | 401 | PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrol | 3e-88 | |
| PRK05617 | 342 | PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrol | 2e-64 | |
| PLN02874 | 379 | PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrol | 3e-64 | |
| PLN02988 | 381 | PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrol | 2e-63 | |
| cd06558 | 195 | cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme | 1e-39 | |
| COG1024 | 257 | COG1024, CaiD, Enoyl-CoA hydratase/carnithine race | 1e-34 | |
| PRK06688 | 259 | PRK06688, PRK06688, enoyl-CoA hydratase; Provision | 1e-23 | |
| pfam00378 | 245 | pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami | 2e-19 | |
| PRK05980 | 260 | PRK05980, PRK05980, enoyl-CoA hydratase; Provision | 5e-15 | |
| PLN02664 | 275 | PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d | 2e-14 | |
| TIGR02280 | 256 | TIGR02280, PaaB1, phenylacetate degradation probab | 4e-14 | |
| PRK06072 | 248 | PRK06072, PRK06072, enoyl-CoA hydratase; Provision | 2e-13 | |
| PRK05809 | 260 | PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata | 9e-13 | |
| PRK07657 | 260 | PRK07657, PRK07657, enoyl-CoA hydratase; Provision | 2e-12 | |
| PRK05862 | 257 | PRK05862, PRK05862, enoyl-CoA hydratase; Provision | 2e-12 | |
| PRK07511 | 260 | PRK07511, PRK07511, enoyl-CoA hydratase; Provision | 7e-12 | |
| PLN02888 | 265 | PLN02888, PLN02888, enoyl-CoA hydratase | 8e-12 | |
| PRK05870 | 249 | PRK05870, PRK05870, enoyl-CoA hydratase; Provision | 1e-11 | |
| PRK07260 | 255 | PRK07260, PRK07260, enoyl-CoA hydratase; Provision | 3e-11 | |
| PRK06127 | 269 | PRK06127, PRK06127, enoyl-CoA hydratase; Provision | 3e-11 | |
| PRK07659 | 260 | PRK07659, PRK07659, enoyl-CoA hydratase; Provision | 4e-11 | |
| PLN02600 | 251 | PLN02600, PLN02600, enoyl-CoA hydratase | 4e-11 | |
| PRK07509 | 262 | PRK07509, PRK07509, enoyl-CoA hydratase; Provision | 7e-11 | |
| PRK08138 | 261 | PRK08138, PRK08138, enoyl-CoA hydratase; Provision | 7e-11 | |
| PRK06210 | 272 | PRK06210, PRK06210, enoyl-CoA hydratase; Provision | 1e-10 | |
| PRK06144 | 262 | PRK06144, PRK06144, enoyl-CoA hydratase; Provision | 1e-10 | |
| PRK07799 | 263 | PRK07799, PRK07799, enoyl-CoA hydratase; Provision | 2e-10 | |
| PRK07658 | 257 | PRK07658, PRK07658, enoyl-CoA hydratase; Provision | 3e-10 | |
| PRK09674 | 255 | PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; | 3e-10 | |
| PRK06190 | 258 | PRK06190, PRK06190, enoyl-CoA hydratase; Provision | 4e-10 | |
| PRK06142 | 272 | PRK06142, PRK06142, enoyl-CoA hydratase; Provision | 6e-10 | |
| PRK06494 | 259 | PRK06494, PRK06494, enoyl-CoA hydratase; Provision | 3e-09 | |
| PRK05995 | 262 | PRK05995, PRK05995, enoyl-CoA hydratase; Provision | 5e-09 | |
| PRK08258 | 277 | PRK08258, PRK08258, enoyl-CoA hydratase; Provision | 2e-08 | |
| PRK08140 | 262 | PRK08140, PRK08140, enoyl-CoA hydratase; Provision | 2e-08 | |
| PRK12478 | 298 | PRK12478, PRK12478, enoyl-CoA hydratase; Provision | 2e-08 | |
| PRK06495 | 257 | PRK06495, PRK06495, enoyl-CoA hydratase; Provision | 3e-08 | |
| PRK05981 | 266 | PRK05981, PRK05981, enoyl-CoA hydratase; Provision | 3e-08 | |
| PRK05674 | 265 | PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr | 3e-08 | |
| PRK06023 | 251 | PRK06023, PRK06023, enoyl-CoA hydratase; Provision | 1e-07 | |
| PRK08252 | 254 | PRK08252, PRK08252, enoyl-CoA hydratase; Provision | 3e-07 | |
| PRK08260 | 296 | PRK08260, PRK08260, enoyl-CoA hydratase; Provision | 3e-07 | |
| PLN02921 | 327 | PLN02921, PLN02921, naphthoate synthase | 9e-07 | |
| TIGR02441 | 737 | TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c | 1e-06 | |
| TIGR01929 | 259 | TIGR01929, menB, naphthoate synthase (dihydroxynap | 1e-06 | |
| PRK08272 | 302 | PRK08272, PRK08272, enoyl-CoA hydratase; Provision | 1e-06 | |
| PRK07854 | 243 | PRK07854, PRK07854, enoyl-CoA hydratase; Provision | 1e-06 | |
| PRK07468 | 262 | PRK07468, PRK07468, enoyl-CoA hydratase; Provision | 2e-06 | |
| PRK08139 | 266 | PRK08139, PRK08139, enoyl-CoA hydratase; Validated | 5e-06 | |
| PRK08150 | 255 | PRK08150, PRK08150, enoyl-CoA hydratase; Provision | 3e-05 | |
| PRK09120 | 275 | PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydrata | 3e-05 | |
| PRK07327 | 268 | PRK07327, PRK07327, enoyl-CoA hydratase; Provision | 4e-05 | |
| TIGR02437 | 714 | TIGR02437, FadB, fatty oxidation complex, alpha su | 5e-05 | |
| TIGR03210 | 256 | TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd | 8e-05 | |
| PRK09245 | 266 | PRK09245, PRK09245, enoyl-CoA hydratase; Provision | 9e-05 | |
| PRK03580 | 261 | PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr | 1e-04 | |
| PRK07827 | 260 | PRK07827, PRK07827, enoyl-CoA hydratase; Provision | 1e-04 | |
| PRK07396 | 273 | PRK07396, PRK07396, dihydroxynaphthoic acid synthe | 1e-04 | |
| PRK06563 | 255 | PRK06563, PRK06563, enoyl-CoA hydratase; Provision | 2e-04 | |
| COG0447 | 282 | COG0447, MenB, Dihydroxynaphthoic acid synthase [C | 3e-04 | |
| PRK06143 | 256 | PRK06143, PRK06143, enoyl-CoA hydratase; Provision | 4e-04 | |
| PRK07110 | 249 | PRK07110, PRK07110, polyketide biosynthesis enoyl- | 4e-04 | |
| PRK08321 | 302 | PRK08321, PRK08321, naphthoate synthase; Validated | 6e-04 | |
| PRK05864 | 276 | PRK05864, PRK05864, enoyl-CoA hydratase; Provision | 6e-04 | |
| TIGR02440 | 699 | TIGR02440, FadJ, fatty oxidation complex, alpha su | 0.001 |
| >gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 406 bits (1044), Expect = e-143
Identities = 172/226 (76%), Positives = 198/226 (87%), Gaps = 3/226 (1%)
Query: 1 MQRIKSLLRIKH--SFKQVAFVSHQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNR 58
MQR+K+L R+ + + VS+ RSFSALP+Y++ND LQDQVLVEGRAKSRAAILNR
Sbjct: 1 MQRVKALRRVAVPLQWVRFGSVSYG-RSFSALPNYAANDDLQDQVLVEGRAKSRAAILNR 59
Query: 59 PSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118
PS+LNAL MV RLKRLYESWEENPDIGFVLMKG+GRAFCSG DV++LY L+NEG E+
Sbjct: 60 PSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEE 119
Query: 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMG 178
K FFE LY+FVYLQGT++KP+VAI+DGITMGCGAGIS+ GM+RVVTDKTVF++PE QMG
Sbjct: 120 CKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDKTVFAHPEVQMG 179
Query: 179 FHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLN 224
FHPDAGAS+YLS LPGYLGEYLALTG+KLNGVEMIACGLATHY LN
Sbjct: 180 FHPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLN 225
|
Length = 407 |
| >gnl|CDD|177817 PLN02157, PLN02157, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 267 bits (684), Expect = 3e-88
Identities = 123/198 (62%), Positives = 155/198 (78%), Gaps = 2/198 (1%)
Query: 24 QRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEEN 83
+RSF +L + D L QVLVEG SR AILNRP LNAL T M RL++LY++WEE+
Sbjct: 22 RRSFCSL-KLTPED-LDYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEED 79
Query: 84 PDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143
P+IGFV+MKG+GRAFC+GGD+++LY L G + + FF +LY F+YL GT++KPHVAI
Sbjct: 80 PNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYLLGTYLKPHVAI 139
Query: 144 LDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALT 203
L+G+TMG G G+S+ G +RV TD+T+F+ PET +GFHPDAGASF LSHLPG LGEYL LT
Sbjct: 140 LNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEYLGLT 199
Query: 204 GEKLNGVEMIACGLATHY 221
G KL+G EM+ACGLATHY
Sbjct: 200 GLKLSGAEMLACGLATHY 217
|
Length = 401 |
| >gnl|CDD|235533 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 204 bits (521), Expect = 2e-64
Identities = 74/185 (40%), Positives = 112/185 (60%), Gaps = 5/185 (2%)
Query: 40 QDQVLVEGRAKSRAAI--LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-R 96
+D+VL E + LNRP LNAL+ M+ + ++WE++ + V+++GAG R
Sbjct: 2 EDEVLAEVEG--GVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGER 59
Query: 97 AFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGIS 156
FC+GGD+ ALY+ G FF Y+ L + KP++A++DGI MG G GIS
Sbjct: 60 GFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGIS 119
Query: 157 LQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACG 216
G +R+VT++T + PET +GF PD G +++LS PG LG YLALTG +++ + + G
Sbjct: 120 AHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTYLALTGARISAADALYAG 179
Query: 217 LATHY 221
LA H+
Sbjct: 180 LADHF 184
|
Length = 342 |
| >gnl|CDD|178462 PLN02874, PLN02874, 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Score = 205 bits (522), Expect = 3e-64
Identities = 84/182 (46%), Positives = 118/182 (64%), Gaps = 8/182 (4%)
Query: 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGG 102
VL E + + R LNRP LN ++ S+V L E WE++ + +++KGAGRAF +GG
Sbjct: 13 VLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGG 72
Query: 103 DVIALYQLLNEGKFEDFKNFFETLYQFVYLQ---GTFVKPHVAILDGITMGCGAGISLQG 159
D+ Y +G+ D + E +Y+ +L T+ K VA++ G+ MG GAG+ +
Sbjct: 73 DLKMFY----DGRESD-DSCLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPM 127
Query: 160 MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLAT 219
+RVVT+KTVF+ PE +GFH D G S+ LS LPG+LGEYLALTG +LNG EM+ACGLAT
Sbjct: 128 KFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGEYLALTGARLNGKEMVACGLAT 187
Query: 220 HY 221
H+
Sbjct: 188 HF 189
|
Length = 379 |
| >gnl|CDD|178568 PLN02988, PLN02988, 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 203 bits (517), Expect = 2e-63
Identities = 95/192 (49%), Positives = 133/192 (69%), Gaps = 1/192 (0%)
Query: 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFC 99
Q QVLVE ++ R LNRP LNAL+ M+ RL +L+ ++EE+P + V++KG GRAFC
Sbjct: 8 QSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFC 67
Query: 100 SGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQG 159
+GGDV A+ + + +G + NFF Y Y+ T+ K V+IL+GI MG GAG+S+ G
Sbjct: 68 AGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHG 127
Query: 160 MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLAT 219
+R+ T+ TVF+ PET +G PD GAS++LS LPG+ GEY+ LTG +L+G EM+ACGLAT
Sbjct: 128 RFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEYVGLTGARLDGAEMLACGLAT 187
Query: 220 HYTLNGVRYTAL 231
H+ + R TAL
Sbjct: 188 HF-VPSTRLTAL 198
|
Length = 381 |
| >gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 1e-39
Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 3/166 (1%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
LNRP NAL+ M+ L + E +PD+ V++ GAG+AFC+G D+ L L + G
Sbjct: 14 LNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAG- 72
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
E+ + F L + + KP +A ++G +G G ++L R+ + F PE
Sbjct: 73 -EEARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEV 131
Query: 176 QMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGLATH 220
++G P G + L L G L LTG +++ E + GL
Sbjct: 132 KLGLVPGGGGTQRLPRLVGPARARELLLTGRRISAEEALELGLVDE 177
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195 |
| >gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 1e-34
Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 6/180 (3%)
Query: 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGG 102
+LVE LNRP LNALN M+ L + E +PD+ V++ GAG+AF +G
Sbjct: 7 ILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGA 66
Query: 103 DVIALYQLLNEGKFEDF-KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMY 161
D+ L + E+ + + L L KP +A ++G +G G ++L
Sbjct: 67 DLKELLSPEDGNAAENLMQPGQDLLRALADLP----KPVIAAVNGYALGGGLELALACDI 122
Query: 162 RVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLG-EYLALTGEKLNGVEMIACGLATH 220
R+ + F PE +G P G + L L G + L LTGE ++ E + GL
Sbjct: 123 RIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLTGEPISAAEALELGLVDE 182
|
Length = 257 |
| >gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 1e-23
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 6/166 (3%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
+NRP NAL +M L E+ +P + V++ GAGRAF +GGD+ + +
Sbjct: 20 INRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPP 79
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
E + +F+ KP VA ++G +G G ++L ++ FS P
Sbjct: 80 DEL-----APVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFA 134
Query: 176 QMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGLATH 220
++G PDAG S L L G + L GE L+ E + GL
Sbjct: 135 KLGLCPDAGGSALLPRLIGRARAAEMLLLGEPLSAEEALRIGLVNR 180
|
Length = 259 |
| >gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 2e-19
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 5/163 (3%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
L+RP +NAL+ ++ L + E E++P + +++ G AF +G D+ + +
Sbjct: 13 LDRPEAVNALSAELLTELIQALEKLEQDPSVKAIVLTGGPGAFSAGADIKEMAA-EPLAQ 71
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
F + L+ + KP +A ++G +G G ++L YR+ D F PE
Sbjct: 72 QAQFSLEAQDLWSRLE---DLPKPVIAAVNGYALGGGLELALACDYRIAADNAKFGLPEV 128
Query: 176 QMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGL 217
++G P AG + L + G + LTG ++ E + GL
Sbjct: 129 KLGIIPGAGGTQRLPRIIGVSAALEMLLTGRRIRAQEALKMGL 171
|
This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245 |
| >gnl|CDD|180335 PRK05980, PRK05980, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 5e-15
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 2/184 (1%)
Query: 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RA 97
+ D VL+E R LNRP LNALN +++ RL ++ E + + V++ GAG RA
Sbjct: 1 MTDTVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRA 60
Query: 98 FCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISL 157
F +G D+ + G ++F F KP +A ++G+ G G I+
Sbjct: 61 FSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITE 120
Query: 158 QGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACG 216
+ +++ +F+ PE ++G P G + L L G L LTG+ + + G
Sbjct: 121 AVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRALELLLTGDAFSAERALEIG 180
Query: 217 LATH 220
L
Sbjct: 181 LVNA 184
|
Length = 260 |
| >gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 2e-14
Identities = 51/176 (28%), Positives = 75/176 (42%), Gaps = 14/176 (7%)
Query: 55 ILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG 114
LNRPS NAL+ + S ++NP++ +++ GAG FCSG D+ L + +
Sbjct: 22 NLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQS 81
Query: 115 KFEDFKNFFETL-YQFVYLQGTFV------KPHVAILDGITMGCGAGISLQGMYRVVTDK 167
D E L + +LQ KP +A + G +G G I R ++
Sbjct: 82 SSGDRGRSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSED 141
Query: 168 TVFSNPETQMGFHPDAGASFYLSHLPGYLG----EYLALTGEKLNGVEMIACGLAT 219
FS E + D G L LP +G LALTG + +G E GL +
Sbjct: 142 AFFSVKEVDLAITADLGT---LQRLPSIVGYGNAMELALTGRRFSGSEAKELGLVS 194
|
Length = 275 |
| >gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 4e-14
Identities = 50/169 (29%), Positives = 73/169 (43%), Gaps = 15/169 (8%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNE-- 113
LNRP LN+ M L+ E E + D +++ GAGR FC+G D L+E
Sbjct: 14 LNRPDKLNSFTAEMHLELREALERVERD-DARALMLTGAGRGFCAGQD-------LSERN 65
Query: 114 ---GKFEDFKNFFETLYQ-FVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTV 169
G D ET Y V P V ++G+ G GA ++L + +
Sbjct: 66 PTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESAR 125
Query: 170 FSNPETQMGFHPDAGASFYLSHLPGYL-GEYLALTGEKLNGVEMIACGL 217
F ++G PD+G ++ L L G LA+ GEKL+ + GL
Sbjct: 126 FIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLAMLGEKLDARTAASWGL 174
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256 |
| >gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 2e-13
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 15/166 (9%)
Query: 43 VLVEGRAKSRAAILNRPSNLNALNTSM----VGRLKRLYESWEENPDIGFVLMKGAGRAF 98
+ VE R ++RP LNALN M + +LK++ +P I V++ G GRAF
Sbjct: 2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQI----NADPKIRVVIVTGEGRAF 57
Query: 99 CSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQ 158
C G D+ D + F + + + K +++ ++G+T G GI+L
Sbjct: 58 CVGADLSE----FAPDFAIDLRETFYPIIREIRFSD---KIYISAINGVTAGACIGIALS 110
Query: 159 GMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTG 204
++ + F ++G D G +++L L G + + G
Sbjct: 111 TDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILVLG 156
|
Length = 248 |
| >gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 9e-13
Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 8/178 (4%)
Query: 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSG 101
V++E +NRP LNALN+ + L + + E + ++ V++ GAG +AF +G
Sbjct: 6 VILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAG 65
Query: 102 GDVIALYQLLNEGKFEDFKNFFETLYQFVYLQ-GTFVKPHVAILDGITMGCGAGISLQGM 160
D I+ + LNE E K F L V+ + KP +A ++G +G G +S+
Sbjct: 66 AD-ISEMKDLNE--EEGRK--FGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACD 120
Query: 161 YRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGL 217
R+ ++K F PE +G P G + L+ + G + L TG+ +N E + GL
Sbjct: 121 IRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKAKELIYTGDMINAEEALRIGL 178
|
Length = 260 |
| >gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-12
Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 22/175 (12%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNE- 113
LNRP NAL+ +++ L+ + E ++ V++ GAG +AFC+G D+ +NE
Sbjct: 19 LNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAG-MNEE 77
Query: 114 ------GKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK 167
E L Q P +A ++GI +G G ++L +R+ +
Sbjct: 78 QVRHAVSLIRTTMEMVEQLPQ----------PVIAAINGIALGGGLELALACDFRIAAES 127
Query: 168 TVFSNPETQMGFHPDAGASFYLSHL--PGYLGEYLALTGEKLNGVEMIACGLATH 220
ET + P AG + L L G E L TG +++ E GL
Sbjct: 128 ASLGLTETTLAIIPGAGGTQRLPRLIGVGRAKE-LIYTGRRISAQEAKEIGLVEF 181
|
Length = 260 |
| >gnl|CDD|180295 PRK05862, PRK05862, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-12
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 15/180 (8%)
Query: 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGG 102
+LVE R + LNRP LNALN +++ L +++ + IG +++ G+ +AF +G
Sbjct: 6 ILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGA 65
Query: 103 DVIALYQLLNEGKFED-FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMY 161
D+ + L F D +K + T ++ V KP +A + G +G G +++
Sbjct: 66 DIKEMADL----SFMDVYKGDYITNWEKV---ARIRKPVIAAVAGYALGGGCELAMMCDI 118
Query: 162 RVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEY----LALTGEKLNGVEMIACGL 217
+ D F PE ++G P G S L +G+ L LTG ++ E GL
Sbjct: 119 IIAADTAKFGQPEIKLGVLPGMGGS---QRLTRAVGKAKAMDLCLTGRMMDAAEAERAGL 175
|
Length = 257 |
| >gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 7e-12
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 6/165 (3%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLL-NEG 114
L+ P NAL+ M + E +P I V++ GAG FC+GG+ L +LL N
Sbjct: 18 LSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGN---LNRLLENRA 74
Query: 115 K-FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNP 173
K + L+ ++ F KP +A ++G G G ++L V F
Sbjct: 75 KPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMA 134
Query: 174 ETQMGFHPDAGASFYLSH-LPGYLGEYLALTGEKLNGVEMIACGL 217
++G PD G S++L+ LP L L L G+ ++ + A G+
Sbjct: 135 YVKVGLTPDGGGSWFLARALPRQLATELLLEGKPISAERLHALGV 179
|
Length = 260 |
| >gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 8e-12
Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 10/163 (6%)
Query: 34 SSNDYLQDQVLVEGRAKSRAAI--LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLM 91
+ ++ +LV ++++ A +NRP LNAL M+ L ++ +E+ + +++
Sbjct: 2 MTQTVSENLILVP-KSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIIL 60
Query: 92 KGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGC 151
G+GRAFCSG D+ A ++ +G +D + + + Q + KP + ++G +
Sbjct: 61 TGSGRAFCSGVDLTAAEEVF-KGDVKDVET--DPVAQMERCR----KPIIGAINGFAITA 113
Query: 152 GAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194
G I+L V + F + + G P G S LS + G
Sbjct: 114 GFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIG 156
|
Length = 265 |
| >gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-11
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 5/180 (2%)
Query: 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCS 100
D VL++ +N P NA+ M +L+ + E +PD+ +++ GAG+AFC+
Sbjct: 3 DPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCA 62
Query: 101 GGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGM 160
G D+ AL + + ++ P +A ++G +G G ++L
Sbjct: 63 GADLTALGAAPGRPAEDGLRRIYDGFLAVASCP----LPTIAAVNGAAVGAGLNLALAAD 118
Query: 161 YRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG-YLGEYLALTGEKLNGVEMIACGLAT 219
R+ K +F ++G HP GA++ L G + L G + + + GLA
Sbjct: 119 VRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMRFDAEAAVRHGLAL 178
|
Length = 249 |
| >gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-11
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 1/154 (0%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
LNRP N N M + EE+P + F+L+ G+ F GGD++ + + ++E
Sbjct: 17 LNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDD 76
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
+ E + + + KP + +DG G A +++ + + + KT F
Sbjct: 77 VQSLVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFV 136
Query: 176 QMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLN 208
+G PDAG F L+ G +LA+TGE L
Sbjct: 137 GVGLAPDAGGLFLLTRAIGLNRATHLAMTGEALT 170
|
Length = 255 |
| >gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-11
Identities = 44/193 (22%), Positives = 76/193 (39%), Gaps = 8/193 (4%)
Query: 34 SSNDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93
SS ++L E N P+ NA++ M L + + E++ I V++ G
Sbjct: 4 SSISSPTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTG 63
Query: 94 AG-RAFCSGGDVIALYQLL-NEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGC 151
AG +AF SG D+ + + ++ E + + KP +A + G +G
Sbjct: 64 AGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALA---DYAKPTIACIRGYCIGG 120
Query: 152 GAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHL--PGYLGEYLALTGEKLNG 209
G GI+L R+ + + F P ++G L L P + L T + +
Sbjct: 121 GMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSAAKD-LFYTARRFDA 179
Query: 210 VEMIACGLATHYT 222
E + GL T
Sbjct: 180 AEALRIGLVHRVT 192
|
Length = 269 |
| >gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 4e-11
Identities = 48/172 (27%), Positives = 74/172 (43%), Gaps = 19/172 (11%)
Query: 55 ILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG 114
+LNRP LNAL+ M+ L + + E+ V+++G GR F +GGD+ + +E
Sbjct: 20 MLNRPEALNALDEPMLKELLQALKEVAES-SAHIVVLRGNGRGFSAGGDIKMMLSSNDES 78
Query: 115 KFEDFKNFFE----TLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVF 170
KF+ N TLY K ++ + G G G I+L Y +
Sbjct: 79 KFDGVMNTISEIVVTLYT-------MPKLTISAIHGPAAGLGLSIALTADYVIADISAKL 131
Query: 171 SNPETQMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACGLA 218
+ +G PD G F+L +GE A G+KL+ E + GL
Sbjct: 132 AMNFIGIGLIPDGGGHFFLQK---RVGENKAKQIIWEGKKLSATEALDLGLI 180
|
Length = 260 |
| >gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 4e-11
Identities = 43/175 (24%), Positives = 80/175 (45%), Gaps = 6/175 (3%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGA-GRAFCSGGDVIALYQLLNEG 114
L+RP NA+ M+ L+ +E + + V+++ + FC+G D + + ++
Sbjct: 10 LDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGAD-LKERRKMSPS 68
Query: 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPE 174
+ + F N F L+ + P +A+++G +G G ++L R+ ++ VF PE
Sbjct: 69 EVQKFVNSLR--STFSSLEALSI-PTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPE 125
Query: 175 TQMGFHPDAGASFYLSHLPG-YLGEYLALTGEKLNGVEMIACGLATHYTLNGVRY 228
T + P AG + L L G + L TG ++ E + GL + G Y
Sbjct: 126 TGLAIIPGAGGTQRLPRLVGRSRAKELIFTGRRIGAREAASMGLVNYCVPAGEAY 180
|
Length = 251 |
| >gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 7e-11
Identities = 50/174 (28%), Positives = 73/174 (41%), Gaps = 14/174 (8%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
LNRP +NAL+ +M L + +++ I V++ G G AFC+G DV + +
Sbjct: 18 LNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKS----VASSP 73
Query: 116 FEDFKNFFE------TLYQFVYLQGTFVK-PHVAILDGITMGCGAGISLQGMYRVVTDKT 168
K F+ L Q V L + P +A L+G+ G G I+L R+ T
Sbjct: 74 GNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDT 133
Query: 169 VFSNPETQMGFHPDAGASFYLSHL--PGYLGEYLALTGEKLNGVEMIACGLATH 220
S E + G PD + L L E L T + E + GL TH
Sbjct: 134 KLSIMEAKWGLVPDMAGTVSLRGLVRKDVARE-LTYTARVFSAEEALELGLVTH 186
|
Length = 262 |
| >gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 7e-11
Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 8/182 (4%)
Query: 40 QDQVLVEGRAKSRAAI-LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAF 98
D VL+E A A + LNRP NALN + +L + E+PDI +++ G + F
Sbjct: 6 TDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVF 65
Query: 99 CSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQ 158
+G D + + G E + E ++ + KP +A ++G +G G +++
Sbjct: 66 AAGAD---IKEFATAGAIEMYLRHTERYWEAI---AQCPKPVIAAVNGYALGGGCELAMH 119
Query: 159 GMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG-YLGEYLALTGEKLNGVEMIACGL 217
V + F PE ++G P AG + L G + +ALTG + E +A GL
Sbjct: 120 ADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFKAMRMALTGCMVPAPEALAIGL 179
Query: 218 AT 219
+
Sbjct: 180 VS 181
|
Length = 261 |
| >gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-10
Identities = 53/193 (27%), Positives = 80/193 (41%), Gaps = 16/193 (8%)
Query: 37 DYLQDQVLVEGRAKSRAAI-LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG 95
D D VL E A I LNRP LNA M + + E +P + +++ GAG
Sbjct: 1 DMAYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAG 60
Query: 96 RAFCSGGDVIALYQLLNEG---KFEDFKNF-------FETLYQFVYLQGTFVKPHVAILD 145
R FC+G D+ L Q ++ + D + F ++T Y F+ KP +A ++
Sbjct: 61 RGFCAGADMGEL-QTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLT---ALRKPVIAAIN 116
Query: 146 GITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEY-LALTG 204
G G G +L R D F+ + G + G S+ L L G+ L L+
Sbjct: 117 GACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPRLVGHANALDLLLSA 176
Query: 205 EKLNGVEMIACGL 217
E + GL
Sbjct: 177 RTFYAEEALRLGL 189
|
Length = 272 |
| >gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-10
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 13/142 (9%)
Query: 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAF 98
D++L+E R NRP+ NA+ +M L + E+ +P I V+++GAG +AF
Sbjct: 7 TDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAF 66
Query: 99 CSGGDVIALYQLLNEGK-FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISL 157
+G D IA ++ + + ++ + + + P +A + G +G GA I+
Sbjct: 67 VAGTD-IAQFRAFSTAEDAVAYERRIDRVLGALE---QLRVPTIAAIAGACVGGGAAIAA 122
Query: 158 QGMYRVVTDKTVFSNPETQMGF 179
R+ T P + GF
Sbjct: 123 ACDLRIAT-------PSARFGF 137
|
Length = 262 |
| >gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 2e-10
Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 25/199 (12%)
Query: 44 LVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESW---EENPDIGFVLMKGAGRAFCS 100
LVE R + +NRP NAL+T M L+ + ++W + +PDI ++ GAG AFC+
Sbjct: 8 LVEQRGHTLIVTMNRPEARNALSTEM---LRIMVDAWDRVDNDPDIRSCILTGAGGAFCA 64
Query: 101 GGDVIALYQ-----LLNEGKFEDFKNFFETLYQFVYLQG-TFVKPHVAILDGITMGCGAG 154
G D+ A + +G ++ + + L L+G KP +A ++G + G
Sbjct: 65 GMDLKAATKKPPGDSFKDGSYDPSR--IDAL-----LKGRRLTKPLIAAVEGPAIAGGTE 117
Query: 155 ISLQGM-YRVVTDKTVFSNPETQMGFHPDAGASFYL-SHLPGYLGEYLALTGEKLNGVEM 212
I LQG RV + F E + P G++ L +P + L LTG + E
Sbjct: 118 I-LQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEA 176
Query: 213 IACGLATHYTLNGVRYTAL 231
GL H +G AL
Sbjct: 177 KEIGLIGHVVPDG---QAL 192
|
Length = 263 |
| >gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-10
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
LN P NAL++ ++ L L + E++ ++ V++ G GR F +G D+ + +
Sbjct: 17 LNHPP-ANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQ 75
Query: 116 FEDF----KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFS 171
+ + FE + + F KP +A + G +G G +++ R T+
Sbjct: 76 ATELAQLGQVTFERVEK-------FSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLG 128
Query: 172 NPETQMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACGLATH 220
PE +G P + LP Y+G+ A LT E + G E + GL
Sbjct: 129 LPELNLGLIPGFAGT---QRLPRYVGKAKALEMMLTSEPITGAEALKWGLVNG 178
|
Length = 257 |
| >gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 3e-10
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 7/163 (4%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
LNRP NALN +++ +L E+ + IG ++ G R F +G D+ + +
Sbjct: 17 LNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAAT 76
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
D + L+Q + F KP +A ++G +G G ++L + + F PE
Sbjct: 77 LNDPR---PQLWQRL---QAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEI 130
Query: 176 QMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGL 217
+G P AG + L G L + LTGE + + GL
Sbjct: 131 TLGIMPGAGGTQRLIRSVGKSLASQMVLTGESITAQQAQQAGL 173
|
Length = 255 |
| >gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 4e-10
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 7/179 (3%)
Query: 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGG 102
+LVE + R LNRP NAL+ ++ L + + D+ V++ GA AFC+G
Sbjct: 6 LLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGL 65
Query: 103 DVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYR 162
D L +L +G ++ KP + ++G + G ++L
Sbjct: 66 D---LKELGGDGSAYGAQDALPNPSPAW---PAMRKPVIGAINGAAVTGGLELALACDIL 119
Query: 163 VVTDKTVFSNPETQMGFHPDAGASFYLSHLPG-YLGEYLALTGEKLNGVEMIACGLATH 220
+ +++ F++ ++G P G S L G ++LTG+ L+ + + GL T
Sbjct: 120 IASERARFADTHARVGILPGWGLSVRLPQKVGIGRARRMSLTGDFLDAADALRAGLVTE 178
|
Length = 258 |
| >gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 6e-10
Identities = 48/192 (25%), Positives = 79/192 (41%), Gaps = 20/192 (10%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNE-G 114
LNRP NA+N + L ++ + +P++ V++ G+G+ F G D+ A+ + + G
Sbjct: 21 LNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLG 80
Query: 115 KFEDFKNFFETLYQFVYLQGTFV------KPHVAILDGITMGCGAGISLQGMYRVVTDKT 168
K + + + + LQ KP +A + G +G G + R +
Sbjct: 81 KDGLARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADA 140
Query: 169 VFSNPETQMGFHPDAGASFYLSHLPGYLGE----YLALTGEKLNGVEMIACGLATHY--- 221
FS E +G D G+ L LP +G+ LALTG ++ E GL
Sbjct: 141 KFSVREVDLGMVADVGS---LQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDD 197
Query: 222 ---TLNGVRYTA 230
L TA
Sbjct: 198 ADALLAAAHATA 209
|
Length = 272 |
| >gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-09
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSG 101
VE + LNRP +NAL+ L+ +++ + +P+ ++ GAG +AF +G
Sbjct: 6 STVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAG 65
Query: 102 GDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMY 161
D L + GK ++ F L + KP +A ++G+ MG G ++L
Sbjct: 66 ND---LKEQAAGGKRGWPESGFGGLTS----RFDLDKPIIAAVNGVAMGGGFELALACDL 118
Query: 162 RVVTDKTVFSNPETQMGFHPDAGASFYL 189
V + F+ PE ++G AG L
Sbjct: 119 IVAAENATFALPEPRVGLAALAGGLHRL 146
|
Length = 259 |
| >gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 5e-09
Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 32/182 (17%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
LNRP NA N +++ L + + + + + V++ GAG+AFC+G D LN K
Sbjct: 19 LNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGAD-------LNWMK 71
Query: 116 ----FEDFKNF---------FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGM-- 160
+ D +N +Y KP +A + G G G L
Sbjct: 72 KMAGYSDDENRADARRLADMLRAIY-------RCPKPVIARVHGDAYAGGMG--LVAACD 122
Query: 161 YRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATH 220
V D VF E ++G P + + + + LT E+ + E + GL H
Sbjct: 123 IAVAADHAVFCLSEVRLGLIPATISPYVIRAMGERAARRYFLTAERFDAAEALRLGLV-H 181
Query: 221 YT 222
Sbjct: 182 EV 183
|
Length = 262 |
| >gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-08
Identities = 38/124 (30%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
LNRP N L L+ L+ D+ V++ GAG FCSGGDV + L +
Sbjct: 32 LNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMD 91
Query: 116 FEDFKNFFETLYQFVYLQGTFVK-------PHVAILDGITMGCGAGISLQGMYRVVTD-- 166
+ L F + G VK P +A +DG+ G GA +++ R+ T
Sbjct: 92 MPE-------LLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSA 144
Query: 167 KTVF 170
KT F
Sbjct: 145 KTAF 148
|
Length = 277 |
| >gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-08
Identities = 49/162 (30%), Positives = 70/162 (43%), Gaps = 20/162 (12%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNE-- 113
LNRP LN+ M L+ + E+ +L+ GAGR FC+G D L +
Sbjct: 19 LNRPDKLNSFTREMHRELREALDQ-VEDDGARALLLTGAGRGFCAGQD-------LADRD 70
Query: 114 ----GKFEDFKNFFETLYQ-FVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKT 168
G D ET Y V P +A ++G+ G GA ++L +
Sbjct: 71 VTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSA 130
Query: 169 VFSNPETQMGFHPDAGASFYLSHLPGY---LGEYLALTGEKL 207
F ++G PD+G +++L L G LG LAL GEKL
Sbjct: 131 SFIQAFVKIGLVPDSGGTWFLPRLVGMARALG--LALLGEKL 170
|
Length = 262 |
| >gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 2e-08
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 23/178 (12%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQ-----L 110
LNRP LN + M ++ E + DI ++++GAGRAF G D +Q +
Sbjct: 20 LNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAM 79
Query: 111 LNEGKFEDFKNFFETLYQFVYLQGTFV------KPHVAILDGITMGCGAGISLQGMYRVV 164
+ +G+++ K+F + F+ KP +A + G +G + +L +
Sbjct: 80 MTDGRWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIA 139
Query: 165 TDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LG----EYLALTGEKLNGVEMIACGL 217
+D V P ++M GA YL+ + Y L ++ +LTG L GV+ L
Sbjct: 140 SDDAVIGTPYSRMW-----GA--YLTGMWLYRLSLAKVKWHSLTGRPLTGVQAAEAEL 190
|
Length = 298 |
| >gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-08
Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 13/161 (8%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
L+ P +NAL+ + L +++ E PD+ V++ GAG+ FC+G D L
Sbjct: 19 LDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGAD------LKGRPD 71
Query: 116 FE----DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFS 171
D + + + KP +A ++G +G G G+ V ++ VF
Sbjct: 72 VIKGPGDLRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFG 131
Query: 172 NPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEM 212
PE +G G + L + LTG ++ E+
Sbjct: 132 LPEIDVGLA--GGGKHAMRLFGHSLTRRMMLTGYRVPAAEL 170
|
Length = 257 |
| >gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-08
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 4/156 (2%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPD-IGFVLMKGAGRAFCSGGDVIALYQLLNE- 113
L+ P +NA++ M+G L ++ E+ + +++ GAGR FC+G ++ E
Sbjct: 19 LDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRES 78
Query: 114 GKFEDFKNFFETLYQ-FVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSN 172
D ET Y F+ P V ++G G G +L G + F
Sbjct: 79 DSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQ 138
Query: 173 PETQMGFHPDAGASFYLSHLPGYLGEY-LALTGEKL 207
++G PD G+++ L L G L+L GEKL
Sbjct: 139 AFRRIGLVPDGGSTWLLPRLVGKARAMELSLLGEKL 174
|
Length = 266 |
| >gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-08
Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 9/166 (5%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQ---LLN 112
L+R NA N M+ L + + + + F+L++G GR F +G D+ + Q L
Sbjct: 21 LSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDY 80
Query: 113 EGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAG-ISLQGMYRVVTDKTVFS 171
+D + E +Y L+ P +A++ G G G IS M + D F
Sbjct: 81 NTNLDDARELAELMYNLYRLK----IPTLAVVQGAAFGGALGLISCCDM-AIGADDAQFC 135
Query: 172 NPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGL 217
E ++G P + F + + ALT E+ +G GL
Sbjct: 136 LSEVRIGLAPAVISPFVVKAIGERAARRYALTAERFDGRRARELGL 181
|
Length = 265 |
| >gnl|CDD|168351 PRK06023, PRK06023, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-07
Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 27/190 (14%)
Query: 41 DQVLVEGRAKSRAAI----LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGR 96
D +LVE R + + NRP NA+ +M + + ++ + + I + G
Sbjct: 3 DHILVE-RPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEG 61
Query: 97 AFCSGGDVIALYQLLNEGKFEDF-------KNFFETLYQFVYLQGTFVKPHVAILDGITM 149
F +G D+ +DF +F + F+ KP V+ +DG+ +
Sbjct: 62 CFSAGNDM------------QDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDGLAI 109
Query: 150 GCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEY--LALTGEKL 207
G G I L + +++F P + P+AG+S L G+ + LAL GE
Sbjct: 110 GIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQRAFALLAL-GEGF 168
Query: 208 NGVEMIACGL 217
+ GL
Sbjct: 169 SAEAAQEAGL 178
|
Length = 251 |
| >gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-07
Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 15/182 (8%)
Query: 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCS 100
D+VLVE R + +NRP NA+N ++ L + + +PD+ ++ GAG FC+
Sbjct: 3 DEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCA 62
Query: 101 GGDVIALYQ---LLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISL 157
G D+ A + G+ F E + KP +A ++G + G ++L
Sbjct: 63 GMDLKAFARGERPSIPGR--GFGGLTERPPR---------KPLIAAVEGYALAGGFELAL 111
Query: 158 QGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSH-LPGYLGEYLALTGEKLNGVEMIACG 216
V F PE + G G L +P ++ LALTG+ L G
Sbjct: 112 ACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIAMELALTGDMLTAERAHELG 171
Query: 217 LA 218
L
Sbjct: 172 LV 173
|
Length = 254 |
| >gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-07
Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 25/158 (15%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
LNRP LNA +M L +++ + + + V++ GAGRAFC+G D L G
Sbjct: 19 LNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGAD------LSAGGN 72
Query: 116 FEDFKNFFETLYQFVYLQGTFV-------------------KPHVAILDGITMGCGAGIS 156
D + + KP +A ++G +G GA ++
Sbjct: 73 TFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMT 132
Query: 157 LQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194
L R+ + F + G P+A +S++L L G
Sbjct: 133 LAMDIRLASTAARFGFVFGRRGIVPEAASSWFLPRLVG 170
|
Length = 296 |
| >gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 9e-07
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 20 VSHQQRSFSALPDYSSN---DYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRL 76
VS + + +PD S D + ++ + EG AK +NRP NA V L+R
Sbjct: 46 VSSEPVVWRKVPDGSGKEFTDIIYEKAVGEGIAK---ITINRPERRNAFRPRTVKELQRA 102
Query: 77 YESWEENPDIGFVLMKGAG-RAFCSGGD 103
+ ++ +G +++ G G +AFCSGGD
Sbjct: 103 FNDARDDSSVGVIILTGKGTKAFCSGGD 130
|
Length = 327 |
| >gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 16/162 (9%)
Query: 56 LNRP-SNLNALNTSMVGRLKRLYESWEENPDI-GFVLMKGAGRAFCSGGDV--IALYQLL 111
++ P S +N L+ + K + N I VL+ G +F +G D+ IA +
Sbjct: 28 IDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKTA 87
Query: 112 NEGKF--EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTD--K 167
E ++ + FE + + KP VA + G +G G ++L YR+ T K
Sbjct: 88 QEVTQLSQEGQEMFERIEKSQ-------KPIVAAISGSCLGGGLELALACHYRIATKDRK 140
Query: 168 TVFSNPETQMGFHPDAGASFYLSHLPGYLGEY-LALTGEKLN 208
T+ PE +G P AG + L L G + LTG+K+
Sbjct: 141 TLLGLPEVMLGLLPGAGGTQRLPKLTGVPAALDMMLTGKKIR 182
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737 |
| >gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-06
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 55 ILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGD 103
+NRP NA V + + + E+PDIG V++ GAG +AFCSGGD
Sbjct: 17 TINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGD 66
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259 |
| >gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 55 ILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALY 108
LNRP NA+ L+ E + +P + +L+ GAG+ FC+G D+ A
Sbjct: 24 TLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYA 77
|
Length = 302 |
| >gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 13/165 (7%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
L RP NALN + L+ + +++ G G FC+G D L+
Sbjct: 15 LQRPERRNALNAELCEELREAVRK-AVDESARAIVLTGQGTVFCAGAD-------LSGDV 66
Query: 116 FEDFKNFFETLYQFVY-LQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPE 174
+ D +F + L + ++ + V P +A ++G +G G +++ RVV + F P
Sbjct: 67 YAD--DFPDALIEMLHAIDAAPV-PVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPV 123
Query: 175 TQMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGLA 218
+ G D LS L G + L EKL + +A G+A
Sbjct: 124 AKYGIALDNWTIRRLSSLVGGGRARAMLLGAEKLTAEQALATGMA 168
|
Length = 243 |
| >gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGD 103
LNRP NAL+ M+ L + + V++ GAG++FC+GGD
Sbjct: 20 LNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGD 67
|
Length = 262 |
| >gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-06
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGD 103
LNRP NAL+ +M+ L+ ++ +P + V++ AG+AFC+G D
Sbjct: 26 LNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHD 73
|
Length = 266 |
| >gnl|CDD|181254 PRK08150, PRK08150, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 49/168 (29%), Positives = 72/168 (42%), Gaps = 10/168 (5%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
LNRP+ NALN ++ L+ + E + V++ G G FC+G D L +L
Sbjct: 17 LNRPAKRNALNDGLIAALRAAFARLPE--GVRAVVLHGEGDHFCAGLD---LSELRERDA 71
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
E + F +Q V P +A L G +G G ++ RV + T F+ PE
Sbjct: 72 GEGMHHSRRWHRVFDKIQYGRV-PVIAALHGAVVGGGLELASAAHIRVADESTYFALPEG 130
Query: 176 QMGFHPDAGASFYLSHLPGY--LGEYLALTGEKLNGVEMIACGLATHY 221
Q G G S + L G + + + LTG + E GLA Y
Sbjct: 131 QRGIFVGGGGSVRVPRLIGVARMTD-MMLTGRVYDAQEGERLGLA-QY 176
|
Length = 255 |
| >gnl|CDD|236383 PRK09120, PRK09120, p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 15/170 (8%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGD-------VIALY 108
LNRP NA++ ++ + + ++ E + D G +++ GAG A+ +G D A
Sbjct: 23 LNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQP 82
Query: 109 QLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKT 168
++L E + ++ L + KP +A+++G G G + + D+
Sbjct: 83 EILQERIRREAYGWWRRLRW-------YQKPTIAMVNGWCFGGGFSPLVACDLAIAADEA 135
Query: 169 VFSNPETQMGFHPDAGASFYLSHLPGYLGE-YLALTGEKLNGVEMIACGL 217
F E G P G S ++ G+ Y +TGE G + GL
Sbjct: 136 QFGLSEINWGIPPGGGVSKAMADTVGHRDALYYIMTGETFTGRKAAEMGL 185
|
Length = 275 |
| >gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 55 ILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGD 103
+LN P LNA + M L ++ + +PD+ VL++G G+AF +GGD
Sbjct: 26 VLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGD 74
|
Length = 268 |
| >gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-05
Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 15/147 (10%)
Query: 55 ILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG 114
+ P ++N + + + L + ++ + + V++ AF G D+ L
Sbjct: 21 KFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGL---- 76
Query: 115 KFEDFKNFFETLYQFV-YLQGTFVK------PHVAILDGITMGCGAGISLQGMYRVVTDK 167
F L Q++ + F K P VA ++GI +G G L +R+ D
Sbjct: 77 ----FALPDAELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDT 132
Query: 168 TVFSNPETQMGFHPDAGASFYLSHLPG 194
PET++G P G + L + G
Sbjct: 133 AKIGLPETKLGIMPGFGGTVRLPRVIG 159
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714 |
| >gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 8e-05
Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 18/168 (10%)
Query: 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFC 99
+ +L E R ++NRP+ +NA L + + IG +++ GAG +AFC
Sbjct: 2 EDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFC 61
Query: 100 SGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQG 159
+GGD Q ++G ++ + + KP +A + G +G G +
Sbjct: 62 TGGD-----QSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTIC 116
Query: 160 MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLA-LTGEK 206
+ ++K F ++G S PGY LA + GEK
Sbjct: 117 DLTIASEKAQFGQVGPKVG-----------SVDPGYGTALLARVVGEK 153
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256 |
| >gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 9e-05
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 27/178 (15%)
Query: 56 LNRPSNLNALN-TSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG 114
+NRP NAL+ V L + + + V++ GAG AF SGG+V + G
Sbjct: 18 MNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRA--RVG 75
Query: 115 KF--------EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGM--YRVV 164
F + +++ + + +Y P +A ++G + GAG L M R+
Sbjct: 76 AFGGSPADIRQGYRHGIQRIPLALY---NLEVPVIAAVNGPAI--GAGCDLACMCDIRIA 130
Query: 165 TDKTVFSNPETQMGFHP-DAGASFYLSHLPGYLG----EYLALTGEKLNGVEMIACGL 217
++ F+ ++G P D GA LP +G +A TG+ ++ + GL
Sbjct: 131 SETARFAESFVKLGLIPGDGGAWL----LPRIIGMARAAEMAFTGDAIDAATALEWGL 184
|
Length = 266 |
| >gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 16/171 (9%)
Query: 55 ILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNE 113
L+RP NA++ + ++ ++ ++P++ ++ GAG + F +G D+ A E
Sbjct: 17 TLDRP-KANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAA----AE 71
Query: 114 GKFEDFKNF----FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTV 169
G+ D +F F L + L KP +A ++G G G ++L + V D
Sbjct: 72 GEAPD-ADFGPGGFAGLTEIFDLD----KPVIAAVNGYAFGGGFELALAADFIVCADNAS 126
Query: 170 FSNPETQMGFHPDAGASFYL-SHLPGYLGEYLALTGEKLNGVEMIACGLAT 219
F+ PE ++G PD+G L LP + + +TG +++ E + G+
Sbjct: 127 FALPEAKLGIVPDSGGVLRLPKRLPPAIANEMVMTGRRMDAEEALRWGIVN 177
|
Length = 261 |
| >gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 43/168 (25%), Positives = 65/168 (38%), Gaps = 9/168 (5%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDV---IALYQLLN 112
L+ P N NAL+ +V +L + +P + V++ G FC+G D+
Sbjct: 21 LDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGGDPY 80
Query: 113 EGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSN 172
+ + L V L KP +A +DG G G+ V ++ F+
Sbjct: 81 DAAVARAREMTALLRAIVELP----KPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFAL 136
Query: 173 PETQMGFHPDAGASFYLSHL-PGYLGEYLALTGEKLNGVEMIACGLAT 219
E ++G P + L L P Y LTGEK E GL T
Sbjct: 137 TEARIGVAPAIISLTLLPRLSPRAAARYY-LTGEKFGAAEAARIGLVT 183
|
Length = 260 |
| >gnl|CDD|180958 PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGD 103
+NRP NA V + + ++ +IG +++ GAG +AFCSGGD
Sbjct: 28 INRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGD 76
|
Length = 273 |
| >gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 10/166 (6%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
L+RP+ NA +++M+ L +E + ++ ++ G F +G D+ + L G
Sbjct: 14 LDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGG 73
Query: 116 FEDFKNFFETLYQFVYLQGTFV-KPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPE 174
F F E G + KP V + G + G + L V D T F+ E
Sbjct: 74 FP----FPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLE 129
Query: 175 TQMGFHPDAGASFYLSHLPGYLGE---YLALTGEKLNGVEMIACGL 217
Q G P GA+ G+ G YL LTG++ + E + GL
Sbjct: 130 VQRGILPFGGATLRFPQAAGW-GNAMRYL-LTGDEFDAQEALRLGL 173
|
Length = 255 |
| >gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 45 VEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG---RAFCSG 101
V+G AK +NRP NA V + + ++P++G +L+ G G +AFCSG
Sbjct: 26 VDGIAK---ITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSG 82
Query: 102 GD 103
GD
Sbjct: 83 GD 84
|
Length = 282 |
| >gnl|CDD|180423 PRK06143, PRK06143, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 14/181 (7%)
Query: 42 QVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCS 100
V + R + I N S LN L T ++ L + +PD+ ++++GAG +AF
Sbjct: 9 GVTRDDRGVATLTIRNAGS-LNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIG 67
Query: 101 GGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGM 160
G D+ + L + F L F P +A + G +G G ++
Sbjct: 68 GADIKEMATLDQASA----EAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACD 123
Query: 161 YRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGE----YLALTGEKLNGVEMIACG 216
R+ F PE ++G A+ LP +G +L LTGE ++ + +A G
Sbjct: 124 LRIAAHDAQFGMPEVRVGIPSVIHAAL----LPRLIGWARTRWLLLTGETIDAAQALAWG 179
Query: 217 L 217
L
Sbjct: 180 L 180
|
Length = 256 |
| >gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 4e-04
Identities = 39/170 (22%), Positives = 70/170 (41%), Gaps = 16/170 (9%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLN-EG 114
+ N NA + + +L +++ ++P V++ G F +GG L L +G
Sbjct: 20 MQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKG 79
Query: 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYR---VVTDKTVFS 171
F + N + P +A + G G G+ L G+Y V++ ++V++
Sbjct: 80 TFTE-ANLYSLALNCPI-------PVIAAMQG--HAIGGGLVL-GLYADIVVLSRESVYT 128
Query: 172 NPETQMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGLATH 220
+ GF P GA+ L G LG+ + LT G E+ G+
Sbjct: 129 ANFMKYGFTPGMGATAILPEKLGLALGQEMLLTARYYRGAELKKRGVPFP 178
|
Length = 249 |
| >gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 8/59 (13%)
Query: 52 RAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG-------AGRAFCSGGD 103
R A +RP NA V L R + +PD+G VL+ G G AFCSGGD
Sbjct: 37 RIAF-DRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGD 94
|
Length = 302 |
| >gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 6e-04
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGD 103
LNRP +N++ ++ LK + + V++ GAGR F SG D
Sbjct: 25 LNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGAD 72
|
Length = 276 |
| >gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.001
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 13/163 (7%)
Query: 62 LNALNTSMVGRLKRLYESWEENPDI-GFVLMKGAGRAFCSGGDV--IALYQLLNEGKFED 118
+N L ++ + + + I G VL+ G F +G D+ +A Q E K
Sbjct: 23 MNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALA 82
Query: 119 FKNFFETLYQFVYLQ-GTFVKPHVAILDGITMGCGAGISLQGMYRVVTD--KTVFSNPET 175
+ Q ++ + P VA + G +G G ++L RV +D KTV PE
Sbjct: 83 QQG------QVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEV 136
Query: 176 QMGFHPDAGASFYLSHLPGYLGEY-LALTGEKLNGVEMIACGL 217
Q+G P +G + L L G + LTG++L + + GL
Sbjct: 137 QLGLLPGSGGTQRLPRLIGVSTALDMILTGKQLRAKQALKLGL 179
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 269 | |||
| PRK09120 | 275 | p-hydroxycinnamoyl CoA hydratase/lyase; Validated | 100.0 | |
| PRK05980 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06142 | 272 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09245 | 266 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08140 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07327 | 268 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07260 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05862 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06144 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR03210 | 256 | badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb | 100.0 | |
| PRK06023 | 251 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08150 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09076 | 258 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK09674 | 255 | enoyl-CoA hydratase-isomerase; Provisional | 100.0 | |
| PRK06190 | 258 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07511 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08258 | 277 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07657 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05869 | 222 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK05995 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07799 | 263 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06127 | 269 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08138 | 261 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06143 | 256 | enoyl-CoA hydratase; Provisional | 100.0 | |
| TIGR02280 | 256 | PaaB1 phenylacetate degradation probable enoyl-CoA | 100.0 | |
| PRK08139 | 266 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK06563 | 255 | enoyl-CoA hydratase; Provisional | 100.0 | |
| KOG1680 | 290 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| PRK05809 | 260 | 3-hydroxybutyryl-CoA dehydratase; Validated | 100.0 | |
| TIGR01929 | 259 | menB naphthoate synthase (dihydroxynaphthoic acid | 100.0 | |
| PRK05981 | 266 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08252 | 254 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02664 | 275 | enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA | 100.0 | |
| PRK07658 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05674 | 265 | gamma-carboxygeranoyl-CoA hydratase; Validated | 100.0 | |
| PRK08260 | 296 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05870 | 249 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05864 | 276 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08259 | 254 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02888 | 265 | enoyl-CoA hydratase | 100.0 | |
| PRK06494 | 259 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06688 | 259 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07468 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02851 | 407 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PRK07110 | 249 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 100.0 | |
| PLN02600 | 251 | enoyl-CoA hydratase | 100.0 | |
| PRK07396 | 273 | dihydroxynaphthoic acid synthetase; Validated | 100.0 | |
| COG1024 | 257 | CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi | 100.0 | |
| PF00378 | 245 | ECH: Enoyl-CoA hydratase/isomerase family; InterPr | 100.0 | |
| PRK03580 | 261 | carnitinyl-CoA dehydratase; Provisional | 100.0 | |
| PRK06210 | 272 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07659 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK11423 | 261 | methylmalonyl-CoA decarboxylase; Provisional | 100.0 | |
| PRK07509 | 262 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02157 | 401 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| PRK06495 | 257 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN03214 | 278 | probable enoyl-CoA hydratase/isomerase; Provisiona | 100.0 | |
| PRK08788 | 287 | enoyl-CoA hydratase; Validated | 100.0 | |
| PRK07827 | 260 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK05617 | 342 | 3-hydroxyisobutyryl-CoA hydrolase; Provisional | 100.0 | |
| PLN02921 | 327 | naphthoate synthase | 100.0 | |
| PRK06072 | 248 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08290 | 288 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08272 | 302 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK08321 | 302 | naphthoate synthase; Validated | 100.0 | |
| PRK07938 | 249 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02874 | 379 | 3-hydroxyisobutyryl-CoA hydrolase-like protein | 100.0 | |
| TIGR03189 | 251 | dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy | 100.0 | |
| PRK07854 | 243 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK06213 | 229 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PLN02988 | 381 | 3-hydroxyisobutyryl-CoA hydrolase | 100.0 | |
| PRK12478 | 298 | enoyl-CoA hydratase; Provisional | 100.0 | |
| PRK07112 | 255 | polyketide biosynthesis enoyl-CoA hydratase; Valid | 100.0 | |
| PLN02267 | 239 | enoyl-CoA hydratase/isomerase family protein | 100.0 | |
| TIGR03200 | 360 | dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy | 100.0 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 100.0 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 100.0 | |
| TIGR03222 | 546 | benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p | 100.0 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 100.0 | |
| cd06558 | 195 | crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy | 100.0 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 100.0 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 100.0 | |
| KOG1681 | 292 | consensus Enoyl-CoA isomerase [Lipid transport and | 100.0 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 100.0 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 100.0 | |
| PRK08184 | 550 | benzoyl-CoA-dihydrodiol lyase; Provisional | 100.0 | |
| KOG1679 | 291 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| KOG0016 | 266 | consensus Enoyl-CoA hydratase/isomerase [Lipid tra | 100.0 | |
| COG0447 | 282 | MenB Dihydroxynaphthoic acid synthase [Coenzyme me | 100.0 | |
| KOG1684 | 401 | consensus Enoyl-CoA hydratase [Lipid transport and | 100.0 | |
| KOG1682 | 287 | consensus Enoyl-CoA isomerase [Lipid transport and | 100.0 | |
| cd07014 | 177 | S49_SppA Signal peptide peptidase A. Signal peptid | 99.85 | |
| cd07020 | 187 | Clp_protease_NfeD_1 Nodulation formation efficienc | 99.83 | |
| cd07019 | 211 | S49_SppA_1 Signal peptide peptidase A (SppA), a se | 99.7 | |
| cd07022 | 214 | S49_Sppa_36K_type Signal peptide peptidase A (SppA | 99.6 | |
| cd00394 | 161 | Clp_protease_like Caseinolytic protease (ClpP) is | 99.59 | |
| cd07023 | 208 | S49_Sppa_N_C Signal peptide peptidase A (SppA), a | 99.57 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 99.55 | |
| cd07016 | 160 | S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP- | 99.52 | |
| TIGR00706 | 207 | SppA_dom signal peptide peptidase SppA, 36K type. | 99.46 | |
| cd07018 | 222 | S49_SppA_67K_type Signal peptide peptidase A (SppA | 99.37 | |
| cd07021 | 178 | Clp_protease_NfeD_like Nodulation formation effici | 99.36 | |
| cd07015 | 172 | Clp_protease_NfeD Nodulation formation efficiency | 98.9 | |
| cd07013 | 162 | S14_ClpP Caseinolytic protease (ClpP) is an ATP-de | 98.88 | |
| PRK10949 | 618 | protease 4; Provisional | 98.85 | |
| PRK00277 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.8 | |
| PRK12553 | 207 | ATP-dependent Clp protease proteolytic subunit; Re | 98.67 | |
| KOG1683 | 380 | consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA | 98.66 | |
| PRK12319 | 256 | acetyl-CoA carboxylase subunit alpha; Provisional | 98.62 | |
| cd07017 | 171 | S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP- | 98.54 | |
| PRK14512 | 197 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.52 | |
| CHL00198 | 322 | accA acetyl-CoA carboxylase carboxyltransferase al | 98.51 | |
| PF00574 | 182 | CLP_protease: Clp protease; InterPro: IPR001907 In | 98.47 | |
| PRK11778 | 330 | putative inner membrane peptidase; Provisional | 98.47 | |
| CHL00028 | 200 | clpP ATP-dependent Clp protease proteolytic subuni | 98.45 | |
| PRK05724 | 319 | acetyl-CoA carboxylase carboxyltransferase subunit | 98.36 | |
| PLN03230 | 431 | acetyl-coenzyme A carboxylase carboxyl transferase | 98.36 | |
| PLN03229 | 762 | acetyl-coenzyme A carboxylase carboxyl transferase | 98.36 | |
| TIGR00513 | 316 | accA acetyl-CoA carboxylase, carboxyl transferase, | 98.36 | |
| TIGR00493 | 191 | clpP ATP-dependent Clp protease, proteolytic subun | 98.34 | |
| COG0616 | 317 | SppA Periplasmic serine proteases (ClpP class) [Po | 98.33 | |
| TIGR03133 | 274 | malonate_beta malonate decarboxylase, beta subunit | 98.3 | |
| PRK14513 | 201 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.22 | |
| PRK14514 | 221 | ATP-dependent Clp protease proteolytic subunit; Pr | 98.2 | |
| PRK12551 | 196 | ATP-dependent Clp protease proteolytic subunit; Re | 98.18 | |
| PF01972 | 285 | SDH_sah: Serine dehydrogenase proteinase; InterPro | 98.17 | |
| PRK05654 | 292 | acetyl-CoA carboxylase subunit beta; Validated | 98.14 | |
| PRK07189 | 301 | malonate decarboxylase subunit beta; Reviewed | 98.04 | |
| TIGR00515 | 285 | accD acetyl-CoA carboxylase, carboxyl transferase, | 98.01 | |
| CHL00174 | 296 | accD acetyl-CoA carboxylase beta subunit; Reviewed | 97.95 | |
| PF01343 | 154 | Peptidase_S49: Peptidase family S49 peptidase clas | 97.95 | |
| TIGR00705 | 584 | SppA_67K signal peptide peptidase SppA, 67K type. | 97.88 | |
| TIGR03134 | 238 | malonate_gamma malonate decarboxylase, gamma subun | 97.86 | |
| COG0740 | 200 | ClpP Protease subunit of ATP-dependent Clp proteas | 97.73 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 97.7 | |
| PRK10949 | 618 | protease 4; Provisional | 97.6 | |
| COG1030 | 436 | NfeD Membrane-bound serine protease (ClpP class) [ | 97.57 | |
| PRK12552 | 222 | ATP-dependent Clp protease-like protein; Reviewed | 97.51 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 97.49 | |
| COG0777 | 294 | AccD Acetyl-CoA carboxylase beta subunit [Lipid me | 97.15 | |
| COG0825 | 317 | AccA Acetyl-CoA carboxylase alpha subunit [Lipid m | 97.13 | |
| TIGR01117 | 512 | mmdA methylmalonyl-CoA decarboxylase alpha subunit | 97.13 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 97.02 | |
| PF01039 | 493 | Carboxyl_trans: Carboxyl transferase domain; Inter | 95.77 | |
| COG4799 | 526 | Acetyl-CoA carboxylase, carboxyltransferase compon | 95.29 | |
| KOG0840 | 275 | consensus ATP-dependent Clp protease, proteolytic | 95.13 | |
| PLN02820 | 569 | 3-methylcrotonyl-CoA carboxylase, beta chain | 94.94 | |
| KOG0540 | 536 | consensus 3-Methylcrotonyl-CoA carboxylase, non-bi | 85.77 | |
| COG0074 | 293 | SucD Succinyl-CoA synthetase, alpha subunit [Energ | 80.42 |
| >PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-50 Score=355.18 Aligned_cols=215 Identities=20% Similarity=0.214 Sum_probs=187.0
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
.|+++.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++...........
T Consensus 6 ~~~~i~~~~~~~va~itlnrp~~~Nal~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 85 (275)
T PRK09120 6 RWDTVKVEVEDGIAWVTLNRPEKRNAMSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEIL 85 (275)
T ss_pred ccccEEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHH
Confidence 47789999999999999999999999999999999999999999999999999999999999999998753211111111
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
.....+.++.++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 165 (275)
T PRK09120 86 QERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADEAQFGLSEINWGIPPGGGVSKAMADTVGHRDA 165 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCCcEecCCccccCCCCCcchHHHHHHHcCHHHH
Confidence 223334456678889999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+|||++++++++.+.+...+..|..+.+..|.+.
T Consensus 166 ~~llltg~~~~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l 221 (275)
T PRK09120 166 LYYIMTGETFTGRKAAEMGLVNESVPLAQLRARTRELAAKLLEKNPVVLRAAKDGF 221 (275)
T ss_pred HHHHhcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877776665555555554443
|
|
| >PRK05980 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-50 Score=351.73 Aligned_cols=211 Identities=26% Similarity=0.375 Sum_probs=184.6
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhh
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++++...........
T Consensus 2 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~ 81 (260)
T PRK05980 2 TDTVLIEIRDGIALLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVA 81 (260)
T ss_pred CceEEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhh
Confidence 34689999999999999999999999999999999999999999999999999999 79999999998754211111122
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
...+.+.+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 161 (260)
T PRK05980 82 LRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASERALFAKPEIRLGMPPTFGGTQRLPRLAGRKRA 161 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCCCEecCcccccCCCCCchHhhHHHhhcCHHHH
Confidence 344555666788899999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHH
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYN 250 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 250 (269)
++++++|++++++||+++||||+|+|++++++++.+.+...+..|..+.+..|
T Consensus 162 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K 214 (260)
T PRK05980 162 LELLLTGDAFSAERALEIGLVNAVVPHEELLPAARALARRIIRHSPVAVAAIL 214 (260)
T ss_pred HHHHHcCCccCHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999988877666665554444433
|
|
| >PRK06142 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-49 Score=349.08 Aligned_cols=215 Identities=21% Similarity=0.264 Sum_probs=187.6
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhc------
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLN------ 112 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~------ 112 (269)
.++.+.++++++|++|+||||++.|++|.+++.+|.+++++++.|+++++|||||.|++||+|.|++++.....
T Consensus 4 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 83 (272)
T PRK06142 4 TYESFTVELADHVAQVTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDG 83 (272)
T ss_pred CcceEEEEecCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccc
Confidence 35679999999999999999999999999999999999999999999999999999999999999998754211
Q ss_pred -cCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHh
Q 024298 113 -EGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSH 191 (269)
Q Consensus 113 -~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r 191 (269)
....+....+...+.+++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 163 (272)
T PRK06142 84 LARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASADAKFSVREVDLGMVADVGSLQRLPR 163 (272)
T ss_pred cccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCCCeecchhhhhCCCCCchHHHHHHH
Confidence 0111222334455677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHH-HHHHhccCCCCCHHHHHhcCccceeccC-ChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 192 LPGYL-GEYLALTGEKLNGVEMIACGLATHYTLN-GVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 192 ~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++|.. +++++++|++++|+||+++||||+|+|+ +++++++.+.+...+..|..+....|.+.
T Consensus 164 ~~G~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l 227 (272)
T PRK06142 164 IIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKSPLAVRGTKEVL 227 (272)
T ss_pred HhCHHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99995 8999999999999999999999999996 88999988877777666655665555544
|
|
| >PRK09245 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-49 Score=347.58 Aligned_cols=215 Identities=20% Similarity=0.322 Sum_probs=186.4
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCH-HHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhcc--CC
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNT-SMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNE--GK 115 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~-~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~--~~ 115 (269)
|++.+.++++++|++||||||++.|++|. +|+.+|.++++.++.|+++++|||+|.|++||+|.|++++...... ..
T Consensus 1 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (266)
T PRK09245 1 MTDFLLVERDGHIVTLTMNRPETRNALSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGS 80 (266)
T ss_pred CCCceEEEEECCEEEEEECCcccccCCChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence 45679999999999999999999999995 9999999999999999999999999999999999999987542110 01
Q ss_pred hhh-HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhh
Q 024298 116 FED-FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194 (269)
Q Consensus 116 ~~~-~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g 194 (269)
... ...+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG 160 (266)
T PRK09245 81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASETARFAESFVKLGLIPGDGGAWLLPRIIG 160 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCCCEEcccccccCcCCCcchhhhHHHHhh
Confidence 111 1223334566788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 195 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
.. +++++++|++++|+||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 161 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 220 (266)
T PRK09245 161 MARAAEMAFTGDAIDAATALEWGLVSRVVPADQLLPAARALAERIAANPPHALRLTKRLL 220 (266)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 95 899999999999999999999999999999999988877777666655666655554
|
|
| >PRK08140 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-49 Score=346.61 Aligned_cols=213 Identities=22% Similarity=0.286 Sum_probs=182.5
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
|+.+.++++++|++|+||||++.|++|.+++.+|.+++++++ |+++++|||+|.|++||+|.|++++.........+..
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (262)
T PRK08140 3 YETILLAIEAGVATLTLNRPDKLNSFTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLG 81 (262)
T ss_pred CceEEEEeECCEEEEEecCCcccCCCCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhH
Confidence 567899999999999999999999999999999999999999 9999999999999999999999987432101111111
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
..+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. ++
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~~a~ 161 (262)
T PRK08140 82 ESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFIQAFVKIGLVPDSGGTWFLPRLVGMARAL 161 (262)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEEeccccccCCCCCccHHHHHHHHhCHHHHH
Confidence 12223345577889999999999999999999999999999999999999999999999999999999999999995 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++|++++++||+++||||+|+|++++++++.+.+...+..|..+....|.+.
T Consensus 162 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l 216 (262)
T PRK08140 162 GLALLGEKLSAEQAEQWGLIWRVVDDAALADEAQQLAAHLATQPTRGLALIKQAM 216 (262)
T ss_pred HHHHcCCCcCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999977777666655555555555443
|
|
| >PRK07327 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-49 Score=347.32 Aligned_cols=213 Identities=20% Similarity=0.275 Sum_probs=188.2
Q ss_pred ccCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
.|+.+.+++ +++|++|+||||++.|++|.+++.+|.++|+.++.|+++++|||||.|++||+|.|++++.... ....
T Consensus 9 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~--~~~~ 86 (268)
T PRK07327 9 DYPALRFDRPPPGVLEIVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMA--DDFE 86 (268)
T ss_pred CCCeEEEEecCCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhcc--CcHH
Confidence 467799998 5889999999999999999999999999999999999999999999999999999999875421 1122
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
....+++....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 166 (268)
T PRK07327 87 VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKDARIIDGHTRLGVAAGDHAAIVWPLLCGMAK 166 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCCCEEeCcccccCCCCCcchhhHHHHHhCHHH
Confidence 2334455566788899999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||+++|++++++++.+.+...+..|..+.+..|+..
T Consensus 167 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 223 (268)
T PRK07327 167 AKYYLLLCEPVSGEEAERIGLVSLAVDDDELLPKALEVAERLAAGSQTAIRWTKYAL 223 (268)
T ss_pred HHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999988877777766666666555544
|
|
| >PRK07260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-49 Score=345.27 Aligned_cols=214 Identities=22% Similarity=0.362 Sum_probs=187.2
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
++++.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|+.++............
T Consensus 1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK07260 1 FEHIIYEVEDDLATLTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSL 80 (255)
T ss_pred CCceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccccCHHHHHhhccccchhhH
Confidence 35688999999999999999999999999999999999999999999999999999999999999987643222222222
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
..+.+.++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. ++
T Consensus 81 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~ 160 (255)
T PRK07260 81 VKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTKTKFIQAFVGVGLAPDAGGLFLLTRAIGLNRAT 160 (255)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCCCEEechHhhcCCCCCCchhhhhHHhhCHHHHH
Confidence 33445567788899999999999999999999999999999999999999999999999999999999999999985 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+|+++|++++|+||+++||||+++|++++++++...+...+..|..+++..|...
T Consensus 161 ~l~l~g~~~sa~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~ 215 (255)
T PRK07260 161 HLAMTGEALTAEKALEYGFVYRVAESEKLEKTCEQLLKKLRRGSSNSYAAIKSLV 215 (255)
T ss_pred HHHHhCCccCHHHHHHcCCcceecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999987777777666555555555444
|
|
| >PRK05862 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-49 Score=345.18 Aligned_cols=208 Identities=23% Similarity=0.370 Sum_probs=182.2
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
++.+.++++++|++|+||||++.|++|.+++.+|.+++++++.|+++++|||+|.|++||+|.|++++... . . .
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~-~--~ 76 (257)
T PRK05862 3 YETILVETRGRVGLITLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADL---S-F--M 76 (257)
T ss_pred CceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhcc---c-h--h
Confidence 35689999999999999999999999999999999999999999999999999999999999999987532 1 1 1
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
..+...+..++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 77 ~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 156 (257)
T PRK05862 77 DVYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADTAKFGQPEIKLGVLPGMGGSQRLTRAVGKAKAM 156 (257)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCCCEEeCchhccCcCCCccHHHHHHHHhCHHHHH
Confidence 12223344567789999999999999999999999999999999999999999999999999999999999999995 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+|+++|++++|+||+++||||+++|++++++++.+.+...+..|..+....|.+.
T Consensus 157 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 211 (257)
T PRK05862 157 DLCLTGRMMDAAEAERAGLVSRVVPADKLLDEALAAATTIASFSLPAVMMAKEAV 211 (257)
T ss_pred HHHHhCCccCHHHHHHcCCCCEeeCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877666655544555544443
|
|
| >PRK06144 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=345.19 Aligned_cols=215 Identities=22% Similarity=0.257 Sum_probs=188.4
Q ss_pred CccccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccC
Q 024298 36 NDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEG 114 (269)
Q Consensus 36 ~~~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~ 114 (269)
++.+.+.+.++++|+|++|+||||++.|++|.+++.+|.+++++++.|+++++|||||.| ++||+|.|++++....
T Consensus 3 ~~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~--- 79 (262)
T PRK06144 3 MTTSTDELLLEVRGGIARITFNRPAARNAMTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFS--- 79 (262)
T ss_pred cccCCCceEEEeeCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhcc---
Confidence 345677899999999999999999999999999999999999999999999999999999 7999999999875421
Q ss_pred ChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCccc-ccccCCCchHHHHHhhh
Q 024298 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ-MGFHPDAGASFYLSHLP 193 (269)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~-~Gl~p~~g~~~~l~r~~ 193 (269)
..+....+.+.+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||++ +|++|++|++++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~~G~~p~~g~~~~l~~~v 159 (262)
T PRK06144 80 TAEDAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLARLVALL 159 (262)
T ss_pred chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCCCEeechhHHhccCCCCccHHHHHHHHh
Confidence 11222334455677888899999999999999999999999999999999999999999997 99999999999999999
Q ss_pred hHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 194 GYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 194 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
|.. +++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|...
T Consensus 160 G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l 220 (262)
T PRK06144 160 GAARVKDMLFTARLLEAEEALAAGLVNEVVEDAALDARADALAELLAAHAPLTLRATKEAL 220 (262)
T ss_pred CHHHHHHHHHcCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 995 899999999999999999999999999999999987777777666555555555443
|
|
| >TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-49 Score=344.44 Aligned_cols=209 Identities=17% Similarity=0.190 Sum_probs=183.6
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhh
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|+++.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++++... ....
T Consensus 1 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~--~~~~-- 76 (256)
T TIGR03210 1 YEDILYEKRNGIAWIMINRPAKMNAFRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGG--YDGR-- 76 (256)
T ss_pred CCceEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhcc--ccch--
Confidence 45689999999999999999999999999999999999999999999999999999 799999999987421 1111
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
..+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++++++++++++|.. +
T Consensus 77 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~~~~~~~~~l~~~vG~~~A 155 (256)
T TIGR03210 77 -GTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEKAQFGQVGPKVGSVDPGYGTALLARVVGEKKA 155 (256)
T ss_pred -hHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCCCEEecccccccccCCccHHHHHHHHhCHHHH
Confidence 11223455678889999999999999999999999999999999999999999999999998888889999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 156 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~~l 211 (256)
T TIGR03210 156 REIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEVQKWCDEIVEKSPTAIAIAKRSF 211 (256)
T ss_pred HHHHHhCCCcCHHHHHHcCCceeeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877777666665666655544
|
Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. |
| >PRK06023 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=343.36 Aligned_cols=209 Identities=19% Similarity=0.268 Sum_probs=184.2
Q ss_pred CcEEEEEeCC---EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChh
Q 024298 41 DQVLVEGRAK---SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 41 ~~v~~~~~~~---v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
+.+.++++++ |++|+||||++.|++|.+|+.+|.++++.+++|+++++|||+|.|++||+|.|++++..... . .
T Consensus 3 ~~i~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~-~-~- 79 (251)
T PRK06023 3 DHILVERPGAHPGVQVIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAM-G-G- 79 (251)
T ss_pred ceEEEEeecCcCcEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccc-c-c-
Confidence 4588888874 99999999999999999999999999999999999999999999999999999998754211 1 1
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
..+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 80 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~ 157 (251)
T PRK06023 80 --TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPRSLFRTPFVDLALVPEAGSSLLAPRLMGHQR 157 (251)
T ss_pred --hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCCCEecCcccccCCCCCchHHHHHHHHHhHHH
Confidence 12233455678889999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHhc
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFLS 254 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (269)
+++++++|++++++||+++||||+++|++++++++.+.+...+..|..+.+..|.+..
T Consensus 158 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l~ 215 (251)
T PRK06023 158 AFALLALGEGFSAEAAQEAGLIWKIVDEEAVEAETLKAAEELAAKPPQALQIARDLMR 215 (251)
T ss_pred HHHHHHhCCCCCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999888777777766666666665553
|
|
| >PRK08150 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=342.95 Aligned_cols=207 Identities=23% Similarity=0.235 Sum_probs=180.8
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHH
Q 024298 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (269)
Q Consensus 41 ~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (269)
+.|.++++++|++|+||||++.|++|.+|+.+|.++++.++ +++++|||||.|++||+|.|++++.... .....
T Consensus 2 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~----~~~~~ 75 (255)
T PRK08150 2 SLVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERD----AGEGM 75 (255)
T ss_pred ceEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhcc----chhHH
Confidence 45889999999999999999999999999999999999987 7899999999999999999999875421 11122
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHH
Q 024298 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEY 199 (269)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~ 199 (269)
...+.++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +++
T Consensus 76 ~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a~~ 155 (255)
T PRK08150 76 HHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADESTYFALPEGQRGIFVGGGGSVRVPRLIGVARMTD 155 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCCCEEeccccccCCCCCccHHHHHHHHhCHHHHHH
Confidence 3345566788899999999999999999999999999999999999999999999999999999999999999995 899
Q ss_pred HhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHH-HHHHh
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAA-YNCFL 253 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~ 253 (269)
++++|++++|+||+++||||++||++++++++.+.+...+..|..+.+. ++.+.
T Consensus 156 l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~ 210 (255)
T PRK08150 156 MMLTGRVYDAQEGERLGLAQYLVPAGEALDKAMELARRIAQNAPLTNFAVLNALP 210 (255)
T ss_pred HHHcCCcCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888776666554444443 44443
|
|
| >PRK09076 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=343.00 Aligned_cols=209 Identities=20% Similarity=0.263 Sum_probs=182.8
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhh
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
+..+.++++++|++||||||++ |++|.+++.+|.++++.++.|+++++|||+|.| ++||+|.|++++... +...
T Consensus 2 ~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~----~~~~ 76 (258)
T PRK09076 2 MIELDLEIDGHVAILTLNNPPA-NTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADG----DKAV 76 (258)
T ss_pred ceEEEEEEECCEEEEEECCCCc-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhc----Chhh
Confidence 3468999999999999999986 999999999999999999999999999999999 789999999987531 1122
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
...+...+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 156 (258)
T PRK09076 77 AREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQAQMALPEASVGLLPCAGGTQNLPWLVGEGWA 156 (258)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCCCEeeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 233445566788899999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+|+|++++++++.+.+...+..+..+....|...
T Consensus 157 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 212 (258)
T PRK09076 157 KRMILCGERVDAATALRIGLVEEVVEKGEAREAALALAQKVANQSPSAVAACKTLI 212 (258)
T ss_pred HHHHHcCCcCCHHHHHHCCCCceecCchhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999877766666665554555444443
|
|
| >PRK09674 enoyl-CoA hydratase-isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=343.66 Aligned_cols=206 Identities=22% Similarity=0.299 Sum_probs=181.8
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHH
Q 024298 42 QVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKN 121 (269)
Q Consensus 42 ~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 121 (269)
.+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++... + ....
T Consensus 3 ~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~--~~~~ 76 (255)
T PRK09674 3 ELLVSRQQRVLLLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEK----D--LAAT 76 (255)
T ss_pred eEEEEeECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhcc----c--hhhh
Confidence 578899999999999999999999999999999999999999999999999999999999999987531 1 1112
Q ss_pred HHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHH
Q 024298 122 FFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYL 200 (269)
Q Consensus 122 ~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l 200 (269)
+.+....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+. ++++
T Consensus 77 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~ig~~~a~~l 156 (255)
T PRK09674 77 LNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASQM 156 (255)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEeCchhhcCCCCCccHHHHHHHHhCHHHHHHH
Confidence 223445678889999999999999999999999999999999999999999999999999999999999999995 8999
Q ss_pred hccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++|++++++||+++||||+|+|++++++++.+.+...+..|..+.+..|.+.
T Consensus 157 ~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l 209 (255)
T PRK09674 157 VLTGESITAQQAQQAGLVSEVFPPELTLERALQLASKIARHSPLALRAAKQAL 209 (255)
T ss_pred HHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999977777776666555555555443
|
|
| >PRK06190 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=343.44 Aligned_cols=209 Identities=21% Similarity=0.266 Sum_probs=183.7
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
.++++.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++.... . +.
T Consensus 2 ~~~~v~~~~~~~va~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~--~--~~ 77 (258)
T PRK06190 2 TEPILLVETHDRVRTLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDG--S--AY 77 (258)
T ss_pred CCceEEEEeeCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhccc--c--hh
Confidence 3567999999999999999999999999999999999999999999999999999999999999999875321 1 11
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
.. ...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +
T Consensus 78 -~~-~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 155 (258)
T PRK06190 78 -GA-QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASERARFADTHARVGILPGWGLSVRLPQKVGIGRA 155 (258)
T ss_pred -hH-HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCCCEEECcccccCcCCCccHHHHHHHHhCHHHH
Confidence 11 23456678889999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 156 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 211 (258)
T PRK06190 156 RRMSLTGDFLDAADALRAGLVTEVVPHDELLPRARRLAASIAGNNPAAVRALKASY 211 (258)
T ss_pred HHHHHhCCccCHHHHHHcCCCeEecCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999977777666665554555444443
|
|
| >PRK07511 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=343.27 Aligned_cols=212 Identities=20% Similarity=0.297 Sum_probs=186.0
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
+.++.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|+.++..... ...+..
T Consensus 2 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~-~~~~~~ 80 (260)
T PRK07511 2 SAELLSRREGSTLVLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRA-KPPSVQ 80 (260)
T ss_pred CCeeEEEeECCEEEEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhccc-ccchhH
Confidence 3458899999999999999999999999999999999999999999999999999999999999998754211 112233
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
..+...+++++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. ++
T Consensus 81 ~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a~ 160 (260)
T PRK07511 81 AASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARDAKFVMAYVKVGLTPDGGGSWFLARALPRQLAT 160 (260)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCCCEEeccccccCcCCCchHHHHHHHHhCHHHHH
Confidence 44556777888999999999999999999999999999999999999999999999999999999999999999995 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
+|+++|++++++||+++||||+|+|++++++++.+.+...+..|..+....|..
T Consensus 161 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~~~~~~K~~ 214 (260)
T PRK07511 161 ELLLEGKPISAERLHALGVVNRLAEPGQALAEALALADQLAAGSPNALARIKSL 214 (260)
T ss_pred HHHHhCCCCCHHHHHHcCCccEeeCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999999999999999988877766655544444444433
|
|
| >PRK08258 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=345.16 Aligned_cols=213 Identities=22% Similarity=0.249 Sum_probs=186.7
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHH
Q 024298 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (269)
Q Consensus 41 ~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (269)
+.+.++++++|++|+||||++.|+++.+++.+|.++++.++.|+++++|||||.|++||+|.|+.++.......+.....
T Consensus 17 ~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~ 96 (277)
T PRK08258 17 RHFLWEVDDGVATITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELL 96 (277)
T ss_pred cceEEEEECCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999874321111222233
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccC-CCchHHHHHhhhhHH-HH
Q 024298 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHP-DAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~l~r~~g~~-a~ 198 (269)
.+.+.+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++|.. ++
T Consensus 97 ~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~vG~~~a~ 176 (277)
T PRK08258 97 AFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGACALLPRIIGQGRAS 176 (277)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeccccccCcCCCCchHHHHHHHHhCHHHHH
Confidence 4555566788899999999999999999999999999999999999999999999999995 788999999999995 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++|++++|+||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 177 ~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 231 (277)
T PRK08258 177 ELLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQALARRLAAGPTFAHGMTKTML 231 (277)
T ss_pred HHHHcCCCCCHHHHHHcCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877777666666666655554
|
|
| >PRK07657 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=343.82 Aligned_cols=211 Identities=20% Similarity=0.316 Sum_probs=187.5
Q ss_pred ccCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCCh
Q 024298 39 LQDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 39 ~~~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~ 116 (269)
|++++.+++ +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|+.++... +.
T Consensus 1 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~----~~ 76 (260)
T PRK07657 1 MLQNISVDYVTPHVVKITLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGM----NE 76 (260)
T ss_pred CCceEEEEEccCCEEEEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcC----Ch
Confidence 456799996 789999999999999999999999999999999999999999999999 599999999987532 12
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL 196 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~ 196 (269)
.....+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vG~~ 156 (260)
T PRK07657 77 EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG 156 (260)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCCCEEcCchhccCcCCCccHHHHHHHHhCHH
Confidence 22344556667788899999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 -GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++++||+++||||+++|++++++++.+.+...+..|..+.+..|...
T Consensus 157 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 214 (260)
T PRK07657 157 RAKELIYTGRRISAQEAKEIGLVEFVVPAHLLEEKAIEIAEKIASNGPIAVRQAKEAI 214 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 799999999999999999999999999999999988877777666655555555544
|
|
| >PRK05869 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=335.61 Aligned_cols=211 Identities=23% Similarity=0.296 Sum_probs=185.9
Q ss_pred ccCcEEEEEe-----CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhcc
Q 024298 39 LQDQVLVEGR-----AKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNE 113 (269)
Q Consensus 39 ~~~~v~~~~~-----~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~ 113 (269)
|+++|.++.. ++|++|+||||++ |++|.+++.+|.+++++++.|+++++|||||.|++||+|+|++++....
T Consensus 1 ~~~~~~~~~~~~~~~~~i~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~-- 77 (222)
T PRK05869 1 MNEFVNVVVSDGSQDAGLATLLLSRPPT-NALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLS-- 77 (222)
T ss_pred CccchhhhcccCcccCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccC--
Confidence 4566777665 8899999999985 9999999999999999999999999999999999999999999875421
Q ss_pred CChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhh
Q 024298 114 GKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLP 193 (269)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~ 193 (269)
........+.++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++
T Consensus 78 --~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~i 155 (222)
T PRK05869 78 --AQEADTAARVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLAPSGDGMARLTRAA 155 (222)
T ss_pred --hhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCCCEEcCchhccCCCCCccHHHHHHHHh
Confidence 112223345567788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHhcCCccchHHHHHHhh
Q 024298 194 GYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFLSLPDRDFHWLRNELE 268 (269)
Q Consensus 194 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~ 268 (269)
|.. +++++++|++++|+||+++||||+++|+++++++ +.++.+.+.+.|+.++..+|+.++
T Consensus 156 g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~--------------a~~~a~~ia~~~~~a~~~~K~~~~ 217 (222)
T PRK05869 156 GPSRAKELVFSGRFFDAEEALALGLIDEMVAPDDVYDA--------------AAAWARRFLDGPPHALAAAKAGIS 217 (222)
T ss_pred CHHHHHHHHHcCCCcCHHHHHHCCCCCEeeCchHHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 995 7999999999999999999999999999999998 666666677777777777777664
|
|
| >PRK05995 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=342.90 Aligned_cols=212 Identities=20% Similarity=0.288 Sum_probs=183.8
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
++.+.++++++|++||||||++.|++|.+++.+|.++++.++.|+++++|||||.|++||+|.|++++........ ...
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~~ 81 (262)
T PRK05995 3 YETLEIEQRGQVATVTLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSD-DEN 81 (262)
T ss_pred CceEEEEeeCCEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCc-hhh
Confidence 5679999999999999999999999999999999999999999999999999999999999999998754211111 111
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
......+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ ++++++|.. ++
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vg~~~a~ 160 (262)
T PRK05995 82 RADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADHAVFCLSEVRLGLIPATISP-YVIRAMGERAAR 160 (262)
T ss_pred hhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCCCEEeCcccccccCccchHH-HHHHHhCHHHHH
Confidence 1223456678889999999999999999999999999999999999999999999999999988765 488999995 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|.+.
T Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 215 (262)
T PRK05995 161 RYFLTAERFDAAEALRLGLVHEVVPAEALDAKVDELLAALVANSPQAVRAGKRLV 215 (262)
T ss_pred HHHHcCCccCHHHHHHcCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877777666655666555544
|
|
| >PRK07799 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=342.85 Aligned_cols=214 Identities=23% Similarity=0.287 Sum_probs=180.8
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
.++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++...........
T Consensus 3 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (263)
T PRK07799 3 GGPHALVEQRGHTLIVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKD 82 (263)
T ss_pred CCceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhh
Confidence 35679999999999999999999999999999999999999999999999999999999999999998764311111000
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
.......+..+ ..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 83 ~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 161 (263)
T PRK07799 83 GSYDPSRIDAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGESAKFGISEAKWSLFPMGGSAVRLVRQIPYTVA 161 (263)
T ss_pred hhhhhhHHHHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCCCEecCcccccCcCCCccHHHHHHHHhCHHHH
Confidence 00011222223 347899999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+|||++++++++.+.+...+..|..+....|++.
T Consensus 162 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~a~~~~K~~l 217 (263)
T PRK07799 162 CDLLLTGRHITAAEAKEIGLIGHVVPDGQALDKALELAELINANGPLAVQAILRTI 217 (263)
T ss_pred HHHHHcCCCCCHHHHHHcCCccEecCcchHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 99999999999999999999999999999999877777666666555555555444
|
|
| >PRK06127 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=342.69 Aligned_cols=213 Identities=22% Similarity=0.280 Sum_probs=187.4
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
..+.|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++.... ...+
T Consensus 9 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~--~~~~ 86 (269)
T PRK06127 9 PTGKLLAEKTGGLGRITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESR--SDAE 86 (269)
T ss_pred CCCceEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcc--cchH
Confidence 456699999999999999999999999999999999999999999999999999998 7999999999875421 1122
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
....+.+....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 87 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 166 (269)
T PRK06127 87 AVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAEDSRFGIPAARLGLGYGYDGVKNLVDLVGPSA 166 (269)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCCCEeeCchhhhCCCCCccHHHHHHHHhCHHH
Confidence 2334455566788899999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++++||+++||||+|||++++++++.+.+...+..|..+.+..|.+.
T Consensus 167 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 223 (269)
T PRK06127 167 AKDLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAATIAGNAPLTLRAAKRAI 223 (269)
T ss_pred HHHHHHcCCCCCHHHHHHcCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999988877776655555555555444
|
|
| >PRK08138 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=341.66 Aligned_cols=209 Identities=22% Similarity=0.345 Sum_probs=183.3
Q ss_pred ccCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
..+.+.++. +++|++|+||||++.|++|.+|+.+|.++++.+++|+++++|||+|.|++||+|.|++++... .
T Consensus 5 ~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~--- 78 (261)
T PRK08138 5 ATDVVLLERPADGVALLRLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATA---G--- 78 (261)
T ss_pred CCCCEEEEEccCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhcc---c---
Confidence 345678887 788999999999999999999999999999999999999999999999999999999987532 1
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
....+.+.+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 158 (261)
T PRK08138 79 AIEMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGESASFGQPEIKVGLMPGAGGTQRLVRAVGKFK 158 (261)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCCCEeeCcccccccCCCCcHHHHHHHHhCHHH
Confidence 1123344556788889999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++|+++|++++++||+++||||+++|++++++++.+.+...+..|..+....|.+.
T Consensus 159 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 215 (261)
T PRK08138 159 AMRMALTGCMVPAPEALAIGLVSEVVEDEQTLPRALELAREIARMPPLALAQIKEVV 215 (261)
T ss_pred HHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999887777666665555555555443
|
|
| >PRK06143 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-48 Score=341.53 Aligned_cols=209 Identities=21% Similarity=0.319 Sum_probs=183.8
Q ss_pred cCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChh
Q 024298 40 QDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 40 ~~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
++++.++. +++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.| ++||+|.|++++... +..
T Consensus 5 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~----~~~ 80 (256)
T PRK06143 5 NAHAGVTRDDRGVATLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATL----DQA 80 (256)
T ss_pred cccceeeecCCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhc----Chh
Confidence 34577774 688999999999999999999999999999999999999999999999 799999999987532 122
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
....+...++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |++|+++++++++|..
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~-p~~~~~~~l~~~iG~~~ 159 (256)
T PRK06143 81 SAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHDAQFGMPEVRVGI-PSVIHAALLPRLIGWAR 159 (256)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCCCEEeCCccccCC-CCccHHHHHHHhcCHHH
Confidence 23445566777888999999999999999999999999999999999999999999999998 7788899999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||++||++++++++.+.+...+..|..+.+..|.+.
T Consensus 160 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 216 (256)
T PRK06143 160 TRWLLLTGETIDAAQALAWGLVDRVVPLAELDAAVERLAASLAGCGPQALRQQKRLL 216 (256)
T ss_pred HHHHHHcCCcCCHHHHHHCCCcCeecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999988877777766655666555544
|
|
| >TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=341.35 Aligned_cols=209 Identities=22% Similarity=0.295 Sum_probs=179.7
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHH
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (269)
+.++++++|++||||||++.|++|.+|+.+|.++++.++.|+ +++|||||.|++||+|.|++++..... ...+....+
T Consensus 1 ~~~e~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~ 78 (256)
T TIGR02280 1 ILSALEAGVARLTLNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPG-GAPDLGRTI 78 (256)
T ss_pred CeEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccc-cchhHHHHH
Confidence 457889999999999999999999999999999999999998 999999999999999999998754211 111111122
Q ss_pred HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHh
Q 024298 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLA 201 (269)
Q Consensus 123 ~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ 201 (269)
...+..++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +++|+
T Consensus 79 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~lG~~p~~g~~~~l~~~vG~~~a~~l~ 158 (256)
T TIGR02280 79 ETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAESARFIQAFAKIGLIPDSGGTWSLPRLVGRARAMGLA 158 (256)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhCHHHHHHHH
Confidence 22345577889999999999999999999999999999999999999999999999999999999999999995 89999
Q ss_pred ccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 202 LTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++|++++++||+++||||+++|++++++++.+.+...+..|..+....|+..
T Consensus 159 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~~~~~~K~~l 210 (256)
T TIGR02280 159 MLGEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQPTRGLALTKRAI 210 (256)
T ss_pred HcCCCCCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999988877776665554555554443
|
This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). |
| >PRK08139 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-48 Score=342.25 Aligned_cols=211 Identities=20% Similarity=0.275 Sum_probs=185.3
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
..+.+.++.+++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.|++||+|.|+.++... ...+.
T Consensus 9 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~~~~~ 85 (266)
T PRK08139 9 EAPLLLREDRDGVATLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAA---RGLAY 85 (266)
T ss_pred cCCceEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcc---cchhH
Confidence 456799999999999999999999999999999999999999999999999999999999999999987532 11222
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
...+++.+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ .++|++++|.. +
T Consensus 86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~-~~~l~r~vG~~~A 164 (266)
T PRK08139 86 FRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLFCSTP-MVALSRNVPRKQA 164 (266)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCCCEEeCcccCcCCCCCcc-HHHHHHHhCHHHH
Confidence 344455667788899999999999999999999999999999999999999999999999999875 56899999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|++.
T Consensus 165 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 220 (266)
T PRK08139 165 MEMLLTGEFIDAATAREWGLVNRVVPADALDAAVARLAAVIAAKSPAAVRIGKEAF 220 (266)
T ss_pred HHHHHcCCccCHHHHHHcCCccEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877777666555555555444
|
|
| >PRK06563 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=341.58 Aligned_cols=207 Identities=21% Similarity=0.260 Sum_probs=178.2
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHH
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (269)
|.++++|+|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|.|++++....... ...+
T Consensus 1 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~----~~~~ 76 (255)
T PRK06563 1 VSRERRGHVLLIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAG----GFPF 76 (255)
T ss_pred CeEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccc----hhhh
Confidence 457889999999999999999999999999999999999999999999999999999999999875421111 1111
Q ss_pred HHH-HHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHH
Q 024298 123 FET-LYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYL 200 (269)
Q Consensus 123 ~~~-~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l 200 (269)
... ...+...+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. ++++
T Consensus 77 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 156 (255)
T PRK06563 77 PEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADNTRFAQLEVQRGILPFGGATLRFPQAAGWGNAMRY 156 (255)
T ss_pred hhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCCCEEeChhhhcCCCCCccHHHHHHHHhhHHHHHHH
Confidence 111 22233357899999999999999999999999999999999999999999999999999999999999995 8999
Q ss_pred hccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++|++++++||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 157 ~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~ 209 (255)
T PRK06563 157 LLTGDEFDAQEALRLGLVQEVVPPGEQLERAIELAERIARAAPLGVQATLASA 209 (255)
T ss_pred HHcCCCcCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999988877777666655655555444
|
|
| >KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=338.13 Aligned_cols=212 Identities=22% Similarity=0.284 Sum_probs=179.4
Q ss_pred ccccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCCh
Q 024298 37 DYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 37 ~~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~ 116 (269)
.++-.......+++|+.|+||||.++|+++..++.||.++|..+++|+++.++||||.|+.||+|.|+.++.........
T Consensus 33 ~~~~~~~~~~~d~~I~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~ 112 (290)
T KOG1680|consen 33 FEPIKIELVGEDNGIALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVS 112 (290)
T ss_pred cCcceeEEeecCCCeEEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccc
Confidence 33555566667889999999999999999999999999999999999999999999999999999999998763211111
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL 196 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~ 196 (269)
. ..+...+..+.+.+||+||+|||+|+|||++|++.||+|||+++|+|++|+.++|++|.+||+++|+|.+|..
T Consensus 113 ---~---~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~Akfg~~~~~~Gi~p~~GGT~rl~r~vG~s 186 (290)
T KOG1680|consen 113 ---D---GIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEGAKFGFFEIRMGIIPSWGGTQRLPRIVGKS 186 (290)
T ss_pred ---c---ccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCCCeecccccccCCccCCCchhhHHHHhChH
Confidence 1 1122333444589999999999999999999999999999999999999999999999999999999999995
Q ss_pred -HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccH-HHHHHHHhc
Q 024298 197 -GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSS-YAAYNCFLS 254 (269)
Q Consensus 197 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 254 (269)
|+++++||++++|+||+++||||+|||.++++.+|.+++.+.++-|..+ .+.++.+.+
T Consensus 187 ~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~~l~eAv~l~~~Ia~~~~~~v~~~K~svn~ 246 (290)
T KOG1680|consen 187 RALEMILTGRRLGAQEAKKIGLVNKVVPSGDALGEAVKLAEQIAKNSPLVVRADKESVNA 246 (290)
T ss_pred HHHHHHHhcCcccHHHHHhCCceeEeecchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988777766665554433 334444443
|
|
| >PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-48 Score=340.38 Aligned_cols=210 Identities=22% Similarity=0.337 Sum_probs=184.9
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhh
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
++.+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.| ++||+|.|++++... ....
T Consensus 3 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~v~~vvl~g~g~~~F~aG~Dl~~~~~~----~~~~ 78 (260)
T PRK05809 3 LKNVILEKEGHIAVVTINRPKALNALNSETLKELDTVLDDIENDDNVYAVILTGAGEKAFVAGADISEMKDL----NEEE 78 (260)
T ss_pred cceEEEEEeCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEcCCCCceeeCcChHhHhcc----ChHH
Confidence 56789999999999999999999999999999999999999999999999999999 999999999987542 1122
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
...+......++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 158 (260)
T PRK05809 79 GRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEKAKFGQPEVGLGITPGFGGTQRLARIVGPGKA 158 (260)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCCCEEeCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 233444556788899999999999999999999999999999999999999999999999999999999999999985 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++++||+++||||+++|++++++++.+.+...+..|..+.+..|...
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 214 (260)
T PRK05809 159 KELIYTGDMINAEEALRIGLVNKVVEPEKLMEEAKALANKIAANAPIAVKLCKDAI 214 (260)
T ss_pred HHHHHhCCCCCHHHHHHcCCCCcccChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988777666555444444444433
|
|
| >TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-48 Score=341.11 Aligned_cols=210 Identities=19% Similarity=0.222 Sum_probs=182.2
Q ss_pred CcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhh
Q 024298 41 DQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 41 ~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
+.+.+++ +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++++..... .....
T Consensus 2 ~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~-~~~~~ 80 (259)
T TIGR01929 2 TDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGY-IDDSG 80 (259)
T ss_pred ceEEEEEcCCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccc-cchhh
Confidence 4578888 899999999999999999999999999999999999999999999999 79999999987642110 11111
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
... ..+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|+. +
T Consensus 81 ~~~--~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~~~~~~l~~~vG~~~a 158 (259)
T TIGR01929 81 VHR--LNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAENARFGQTGPKVGSFDGGYGSSYLARIVGQKKA 158 (259)
T ss_pred HHH--HHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCCCEecCcccccccCCCccHHHHHHHHhHHHHH
Confidence 111 1234577789999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|.+.
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 214 (259)
T TIGR01929 159 REIWFLCRQYDAEQALDMGLVNTVVPLADLEKETVRWCREILQKSPMAIRMLKAAL 214 (259)
T ss_pred HHHHHhCCccCHHHHHHcCCcccccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877777766666666666554
|
This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches. |
| >PRK05981 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=341.71 Aligned_cols=215 Identities=19% Similarity=0.268 Sum_probs=186.1
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC-CceEEEEEcCCCCccccCChhHHHHhhccC--C
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENP-DIGFVLMKGAGRAFCSGGDVIALYQLLNEG--K 115 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~-~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~--~ 115 (269)
+|+.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+ ++++|||||.|++||+|.|++++....... .
T Consensus 2 ~~~~v~~~~~~~i~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (266)
T PRK05981 2 QFKKVTLDFDGGVAILTLDHPEVMNAVSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSG 81 (266)
T ss_pred CcceEEEEeECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhccccccccc
Confidence 4778999999999999999999999999999999999999999875 599999999999999999999875421111 0
Q ss_pred hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH
Q 024298 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY 195 (269)
Q Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~ 195 (269)
.+....+...++.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++++++++|.
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~~e~~lG~~p~~g~~~~l~~~vg~ 161 (266)
T PRK05981 82 GDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARSAYFLQAFRRIGLVPDGGSTWLLPRLVGK 161 (266)
T ss_pred chhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCCCEEechHhhcCCCCCccHHHHHHHHhHH
Confidence 01123344456778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 196 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
. +++++++|++++++||+++||||+++|++++++++.+.+...+..|..+.+..|++.
T Consensus 162 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~~ 220 (266)
T PRK05981 162 ARAMELSLLGEKLPAETALQWGLVNRVVDDAELMAEAMKLAHELANGPTVALGLIRKLY 220 (266)
T ss_pred HHHHHHHHhCCCcCHHHHHHcCCceEeeCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5 899999999999999999999999999999999977777666666554555555444
|
|
| >PRK08252 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-48 Score=339.58 Aligned_cols=207 Identities=24% Similarity=0.302 Sum_probs=178.3
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|++.+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|.|++++... ....
T Consensus 1 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~---~~~~- 76 (254)
T PRK08252 1 MSDEVLVERRGRVLIITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARG---ERPS- 76 (254)
T ss_pred CCceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcc---cchh-
Confidence 456789999999999999999999999999999999999999999999999999999999999999987542 1111
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
.....+..+.. ..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 77 --~~~~~~~~~~~--~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~a 152 (254)
T PRK08252 77 --IPGRGFGGLTE--RPPRKPLIAAVEGYALAGGFELALACDLIVAARDAKFGLPEVKRGLVAAGGGLLRLPRRIPYHIA 152 (254)
T ss_pred --hhHHHHHHHHH--hcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchHHHHHHHHcCHHHH
Confidence 11112222222 479999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++++||+++||||+|+|++++++++.+.+...+..|..+....|.+.
T Consensus 153 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 208 (254)
T PRK08252 153 MELALTGDMLTAERAHELGLVNRLTEPGQALDAALELAERIAANGPLAVAASKRIV 208 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCcceecCcchHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999877777666666555555555444
|
|
| >PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-48 Score=342.84 Aligned_cols=211 Identities=23% Similarity=0.330 Sum_probs=180.7
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhcc---CC----
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNE---GK---- 115 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~---~~---- 115 (269)
+..+.+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++...... .+
T Consensus 10 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~ 89 (275)
T PLN02664 10 IQKSPNSSVFHLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRS 89 (275)
T ss_pred EEecCCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhh
Confidence 44455899999999999999999999999999999999999999999999999999999999987542110 01
Q ss_pred hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH
Q 024298 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY 195 (269)
Q Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~ 195 (269)
.+....+...+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+.|++|+++++++++|.
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 169 (275)
T PLN02664 90 GERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSEDAFFSVKEVDLAITADLGTLQRLPSIVGY 169 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCCCEeccHHHhhCCCCCccHHHHHHHHhCH
Confidence 11223334455678888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHhccCCCCCHHHHHhcCccceeccC-ChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 196 L-GEYLALTGEKLNGVEMIACGLATHYTLN-GVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 196 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
. +++++++|++++|+||+++||||++||+ +++++++.+.+...+..|..+.+..|.+.
T Consensus 170 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~p~a~~~~K~~l 229 (275)
T PLN02664 170 GNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKSPLAVTGTKAVL 229 (275)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5 8999999999999999999999999995 88888877776666665555555555443
|
|
| >PRK07658 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-48 Score=339.45 Aligned_cols=208 Identities=20% Similarity=0.277 Sum_probs=183.1
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHH
Q 024298 42 QVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKN 121 (269)
Q Consensus 42 ~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 121 (269)
.+.++++++|++|+||||++ |++|.+++.+|.++++.++.|+++++|||+|.|++||+|.|++++.... .......
T Consensus 3 ~i~~~~~~~v~~itl~rp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~---~~~~~~~ 78 (257)
T PRK07658 3 FLSVRVEDHVAVITLNHPPA-NALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVT---EAEQATE 78 (257)
T ss_pred eEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccC---chhhHHH
Confidence 58889999999999999986 9999999999999999999999999999999999999999999875421 1122233
Q ss_pred HHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHH
Q 024298 122 FFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYL 200 (269)
Q Consensus 122 ~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l 200 (269)
+......++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++++
T Consensus 79 ~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 158 (257)
T PRK07658 79 LAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATESAKLGLPELNLGLIPGFAGTQRLPRYVGKAKALEM 158 (257)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCCCcccCcccccCCCCCCcHHHHHHHHhCHHHHHHH
Confidence 445566788899999999999999999999999999999999999999999999999999999999999999995 8999
Q ss_pred hccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++|++++++||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 159 ~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 211 (257)
T PRK07658 159 MLTSEPITGAEALKWGLVNGVFPEETLLDDAKKLAKKIAGKSPATTRAVLELL 211 (257)
T ss_pred HHcCCCcCHHHHHHcCCcCeecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999988877666655555555555443
|
|
| >PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=342.49 Aligned_cols=212 Identities=18% Similarity=0.217 Sum_probs=181.6
Q ss_pred cCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 40 QDQVLVEGR-AKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 40 ~~~v~~~~~-~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|+.+.++++ ++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++.... +.+...
T Consensus 4 ~~~l~~~~~~~~v~~itlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~-~~~~~~ 82 (265)
T PRK05674 4 FQTIELIRDPRGFATLWLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSA-DLDYNT 82 (265)
T ss_pred cceEEEEEcCCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcc-cccchh
Confidence 677999985 789999999999999999999999999999999999999999999999999999999875321 111111
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
.......+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ ++++++|.. +
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gi~p~~~~~-~l~~~vG~~~a 161 (265)
T PRK05674 83 NLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADDAQFCLSEVRIGLAPAVISP-FVVKAIGERAA 161 (265)
T ss_pred hhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCCCEEeCcccccCCCcchhHH-HHHHHhCHHHH
Confidence 11222345678888999999999999999999999999999999999999999999999999988765 488889995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++|+|+||+++||||+|+|++++++++.+.+...+..|..+....|.+.
T Consensus 162 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l 217 (265)
T PRK05674 162 RRYALTAERFDGRRARELGLLAESYPAAELEAQVEAWIANLLLNSPQALRASKDLL 217 (265)
T ss_pred HHHHHhCcccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877776666555555555444
|
|
| >PRK08260 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-48 Score=345.99 Aligned_cols=214 Identities=21% Similarity=0.258 Sum_probs=184.1
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccC-----
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG----- 114 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~----- 114 (269)
++.+.++++++|++|+||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|++||+|.|++++.......
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (296)
T PRK08260 3 YETIRYDVADGIATITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP 82 (296)
T ss_pred cceEEEeeeCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccc
Confidence 556899999999999999999999999999999999999999999999999999999999999999875311000
Q ss_pred -------C-hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchH
Q 024298 115 -------K-FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGAS 186 (269)
Q Consensus 115 -------~-~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~ 186 (269)
. ......+.+....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~ 162 (296)
T PRK08260 83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRRGIVPEAASS 162 (296)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCCCEEecchhhcCcCCCcchh
Confidence 0 01112233445567888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccc-cccHHHHHHHHh
Q 024298 187 FYLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSL-CYSSYAAYNCFL 253 (269)
Q Consensus 187 ~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 253 (269)
++|++++|.. +++++++|++++|+||+++||||+|||++++++++.+.+...+.. +..+....|.+.
T Consensus 163 ~~l~r~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~i~~~~~~~a~~~~K~~l 231 (296)
T PRK08260 163 WFLPRLVGLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIADNTSPVSVALTRQMM 231 (296)
T ss_pred hhHHHhhCHHHHHHHHHcCCccCHHHHHHCCCceeecCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 9999999995 899999999999999999999999999999999988877777653 444555555444
|
|
| >PRK05870 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=340.12 Aligned_cols=209 Identities=22% Similarity=0.337 Sum_probs=183.2
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|++.+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.|++||+|.|++++...... .
T Consensus 1 m~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~----~ 76 (249)
T PRK05870 1 MMDPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGR----P 76 (249)
T ss_pred CCccEEEEccCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhccccc----c
Confidence 456789999999999999999999999999999999999999999999999999999999999999987642111 1
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
.......+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 156 (249)
T PRK05870 77 AEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPGGGATWMLQRAVGPQVA 156 (249)
T ss_pred hHHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCCCEEeCcccccCcCCCCcceeeHHhhhCHHHH
Confidence 123344555677789999999999999999999999999999999999999999999999999999999999999995 7
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++++||+++||||+++ +++++++.+.+...+..|..+....|...
T Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv--~~l~~~a~~~a~~la~~~~~a~~~~K~~~ 210 (249)
T PRK05870 157 RAALLFGMRFDAEAAVRHGLALMVA--DDPVAAALELAAGPAAAPRELVLATKASM 210 (249)
T ss_pred HHHHHhCCccCHHHHHHcCCHHHHH--hhHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999 67888877777777666655665555544
|
|
| >PRK05864 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-48 Score=342.86 Aligned_cols=215 Identities=20% Similarity=0.268 Sum_probs=183.9
Q ss_pred ccCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccC---
Q 024298 39 LQDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG--- 114 (269)
Q Consensus 39 ~~~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~--- 114 (269)
+++.+.++. +++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|.|++++.......
T Consensus 7 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 86 (276)
T PRK05864 7 TMSLVLVDHPRPEIALITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLT 86 (276)
T ss_pred CCCceEEeeecCCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhccccccccc
Confidence 345588887 8899999999999999999999999999999999999999999999999999999999864311000
Q ss_pred ChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccC-CCchHHHHHhhh
Q 024298 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHP-DAGASFYLSHLP 193 (269)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p-~~g~~~~l~r~~ 193 (269)
.........+.+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++|++++|++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~l~~~v 166 (276)
T PRK05864 87 RPTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAI 166 (276)
T ss_pred chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCCCEecCcccccCCCCCCcchheehHhhh
Confidence 1111122334556678889999999999999999999999999999999999999999999999997 788899999999
Q ss_pred hHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 194 GYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 194 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
|.. +++++++|++++|+||+++||||+++|++++++++.+.+...+..|..+.+..|...
T Consensus 167 G~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l 227 (276)
T PRK05864 167 GSSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQLLDTCYAIAARMAGFSRPGIELTKRTL 227 (276)
T ss_pred CHHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 995 899999999999999999999999999999999988877777666555555555444
|
|
| >PRK08259 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-48 Score=339.07 Aligned_cols=209 Identities=22% Similarity=0.256 Sum_probs=178.1
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++.... . ..
T Consensus 1 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~--~--~~ 76 (254)
T PRK08259 1 MSMSVRVERNGPVTTVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGR--G--NR 76 (254)
T ss_pred CCceEEEEEECCEEEEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhccc--c--hh
Confidence 4566899999999999999999999999999999999999999999999999999999999999999875321 1 11
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
.... ....+...+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|.+|++++|++++|.. +
T Consensus 77 ~~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~iG~~~a 154 (254)
T PRK08259 77 LHPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEEDAVFGVFCRRWGVPLIDGGTVRLPRLIGHSRA 154 (254)
T ss_pred hhhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCCCEecCcccccCCCCCccHHHHHHHHhCHHHH
Confidence 1100 011112223479999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+|||++++++++.+.+...+..|..+.+..|.+.
T Consensus 155 ~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~ 210 (254)
T PRK08259 155 MDLILTGRPVDADEALAIGLANRVVPKGQARAAAEELAAELAAFPQTCLRADRLSA 210 (254)
T ss_pred HHHHHcCCccCHHHHHHcCCCCEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999977777666666555555555444
|
|
| >PLN02888 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=338.99 Aligned_cols=209 Identities=23% Similarity=0.327 Sum_probs=181.2
Q ss_pred cccCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCCh
Q 024298 38 YLQDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 38 ~~~~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~ 116 (269)
...+.+.++. +++|++|+||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|++||+|+|+.++..... ..
T Consensus 6 ~~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~- 83 (265)
T PLN02888 6 VSENLILVPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFK-GD- 83 (265)
T ss_pred CCCCeEEEEeccCCEEEEEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhcc-ch-
Confidence 3556788886 78999999999999999999999999999999999999999999999999999999998653211 11
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL 196 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~ 196 (269)
.. .....++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 84 --~~---~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~ 158 (265)
T PLN02888 84 --VK---DVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRGAKFIDTHAKFGIFPSWGLSQKLSRIIGAN 158 (265)
T ss_pred --hh---HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCCCEecCccccccCCCCccHhhHHHHHhCHH
Confidence 11 1224566778999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 -GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||++||++++++++.+.+...+..+..+.+..|++.
T Consensus 159 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 216 (265)
T PLN02888 159 RAREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEAIIKNNQGMVLRYKSVI 216 (265)
T ss_pred HHHHHHHhCCccCHHHHHHcCCccEeeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999977777766665554555555444
|
|
| >PRK06494 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=338.22 Aligned_cols=208 Identities=21% Similarity=0.232 Sum_probs=180.4
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
+++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|.|++++..... ..
T Consensus 2 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~---~~ 78 (259)
T PRK06494 2 ALPFSTVERKGHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGK---RG 78 (259)
T ss_pred CCceeEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCc---ch
Confidence 456799999999999999999999999999999999999999999999999999998 79999999998753211 11
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
. ....+..+. .+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 79 ~---~~~~~~~~~-~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vg~~~ 154 (259)
T PRK06494 79 W---PESGFGGLT-SRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAENATFALPEPRVGLAALAGGLHRLPRQIGLKR 154 (259)
T ss_pred h---hhHHHHHHH-HHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCchHHHHHHHHcCHHH
Confidence 0 011222233 34589999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 155 a~~lll~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 211 (259)
T PRK06494 155 AMGMILTGRRVTAREGLELGFVNEVVPAGELLAAAERWADDILACSPLSIRASKQAV 211 (259)
T ss_pred HHHHHHcCCcCCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 899999999999999999999999999999999988877777666666666655554
|
|
| >PRK06688 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=338.34 Aligned_cols=210 Identities=25% Similarity=0.341 Sum_probs=187.1
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
+.+.+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.|++||+|.|+.++..... . .
T Consensus 3 ~~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~--~--~ 78 (259)
T PRK06688 3 MVTDLLVELEDGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPP--K--P 78 (259)
T ss_pred CCCceEEEEECCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCc--c--h
Confidence 34568999999999999999999999999999999999999999999999999999999999999998764211 1 1
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
..+...++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +
T Consensus 79 -~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a 157 (259)
T PRK06688 79 -PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFSLPFAKLGLCPDAGGSALLPRLIGRARA 157 (259)
T ss_pred -HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEecCchhhcCCCCCcchhhHHHHHhhHHHH
Confidence 33455667788899999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++++||+++||||+++|++++++++.+.+...+..|..+.+..|...
T Consensus 158 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~i~~~~~~a~~~~K~~l 213 (259)
T PRK06688 158 AEMLLLGEPLSAEEALRIGLVNRVVPAAELDAEADAQAAKLAAGPASALRYTKRAI 213 (259)
T ss_pred HHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988877777666655555555444
|
|
| >PRK07468 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=337.46 Aligned_cols=212 Identities=18% Similarity=0.250 Sum_probs=180.7
Q ss_pred cCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 40 QDQVLVEGR-AKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 40 ~~~v~~~~~-~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|+.+.++++ ++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|+.++..... .....
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~ 81 (262)
T PRK07468 3 FETIRIAVDARGVATLTLNRPEKHNALSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMT-ADRAT 81 (262)
T ss_pred cceEEEEEcCCcEEEEEEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcc-cchhh
Confidence 456888886 6899999999999999999999999999999999999999999999999999999998753211 11111
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
.......+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++.+ +|.. +
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~a~f~~pe~~~Gl~p~~g~~~~~~~-vG~~~a 160 (262)
T PRK07468 82 RIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSGARFGLTETRLGLIPATISPYVVAR-MGEANA 160 (262)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCCCEEeCchhccCCCcccchhhHHhh-ccHHHH
Confidence 1222344566888999999999999999999999999999999999999999999999999999999886654 7884 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++|+++|++++++||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 161 ~~lll~g~~~~a~eA~~~Glv~~v~~~~~l~~~~~~~a~~l~~~~~~a~~~~K~~l 216 (262)
T PRK07468 161 RRVFMSARLFDAEEAVRLGLLSRVVPAERLDAAVEAEVTPYLSCAPGAVAAAKALV 216 (262)
T ss_pred HHHHHhCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999888777766666555555555444
|
|
| >PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=350.01 Aligned_cols=229 Identities=75% Similarity=1.212 Sum_probs=204.8
Q ss_pred CcchhHHHhhhccceEeece-ecCccccccCCCCCCCccccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHH
Q 024298 1 MQRIKSLLRIKHSFKQVAFV-SHQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYES 79 (269)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~ 79 (269)
|||.|.|-|..--...+++= -.+.|+|++.|+.-......+.|.++.++++++||||||+++|+||.+|+.+|.++|+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~~~~~~ItLNRP~~lNALs~~m~~eL~~al~~ 80 (407)
T PLN02851 1 MQRVKALRRVAVPLQWVRFGSVSYGRSFSALPNYAANDDLQDQVLVEGRAKSRAAILNRPSSLNALTIPMVARLKRLYES 80 (407)
T ss_pred ChhHHHHHHHhhhccceeeeeecCCcccccCCcccccCCCCCCeEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHH
Confidence 79999998876555545532 34678899999887777888899999999999999999999999999999999999999
Q ss_pred HhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhC
Q 024298 80 WEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQG 159 (269)
Q Consensus 80 ~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~c 159 (269)
++.|+++++|||+|.|++||+|+|++++.......+.+....++...+.+...+.++|||+||+|||+|+|||++|+++|
T Consensus 81 ~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~ 160 (407)
T PLN02851 81 WEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPG 160 (407)
T ss_pred HHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhC
Confidence 99999999999999999999999999986532222223455667777888889999999999999999999999999999
Q ss_pred CEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCHHHHHhcCccceeccCChHHH
Q 024298 160 MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGVRYT 229 (269)
Q Consensus 160 D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~ 229 (269)
|+||++++++|++||+++|++|++|++++|+|++|..+.++++||++++++||+++||+|+++|++++.+
T Consensus 161 D~rVate~a~famPE~~iGl~PdvG~s~~L~rl~g~~g~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l~~ 230 (407)
T PLN02851 161 MFRVVTDKTVFAHPEVQMGFHPDAGASYYLSRLPGYLGEYLALTGQKLNGVEMIACGLATHYCLNARLPL 230 (407)
T ss_pred CEEEEeCCceEecchhccCCCCCccHHHHHHHhcCHHHHHHHHhCCcCCHHHHHHCCCceeecCHhhHHH
Confidence 9999999999999999999999999999999999998999999999999999999999999999999843
|
|
| >PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=335.21 Aligned_cols=208 Identities=19% Similarity=0.246 Sum_probs=184.5
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|+..+.++++++|++|+||||++.|++|.+++.+|.+++++++.|+++++|||+|.|++||+|.|+.++..... . +
T Consensus 3 ~~~~~~~~~~~~v~~i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~--~-~- 78 (249)
T PRK07110 3 MKVVELREVEEGIAQVTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQT--G-K- 78 (249)
T ss_pred CCceEEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccc--h-h-
Confidence 68889999999999999999999999999999999999999999999999999999999999999998754211 1 1
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
..+. . ..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|+. +
T Consensus 79 -~~~~-~-~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g~~~a 155 (249)
T PRK07110 79 -GTFT-E-ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRESVYTANFMKYGFTPGMGATAILPEKLGLALG 155 (249)
T ss_pred -hhHh-h-HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCCCEecCchhccCCCCCchHHHHHHHHhCHHHH
Confidence 1122 2 4678889999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++++||+++||||+|+|++++++++.+.+...+..|..+.+..|+..
T Consensus 156 ~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 211 (249)
T PRK07110 156 QEMLLTARYYRGAELKKRGVPFPVLPRAEVLEKALELARSLAEKPRHSLVLLKDHL 211 (249)
T ss_pred HHHHHcCCccCHHHHHHcCCCeEEeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999977777777666555555555444
|
|
| >PLN02600 enoyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=336.08 Aligned_cols=202 Identities=20% Similarity=0.336 Sum_probs=179.5
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGA-GRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~-g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
+++|++||||||++.|++|.+|+.+|.+++++++.|+++++|||||. |++||+|.|+.++... .......+...+
T Consensus 2 ~~~v~~itlnrp~~~Nal~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~----~~~~~~~~~~~~ 77 (251)
T PLN02600 2 DSGIVELRLDRPEAKNAIGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKM----SPSEVQKFVNSL 77 (251)
T ss_pred CCcEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhcc----ChHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999998 4899999999987542 112234455666
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHhccCC
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLALTGE 205 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~ 205 (269)
..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++|+++|+
T Consensus 78 ~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~G~~~a~~l~ltg~ 157 (251)
T PLN02600 78 RSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEEAVFGLPETGLAIIPGAGGTQRLPRLVGRSRAKELIFTGR 157 (251)
T ss_pred HHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCCCEEeCcccccCcCCCchHHHHHHHHhCHHHHHHHHHhCC
Confidence 7788899999999999999999999999999999999999999999999999999999999999999995 899999999
Q ss_pred CCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 206 KLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 206 ~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++||+++||||+++|++++++++.+.+...+..|..+....|++.
T Consensus 158 ~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~p~a~~~~K~~l 205 (251)
T PLN02600 158 RIGAREAASMGLVNYCVPAGEAYEKALELAQEINQKGPLAIKMAKKAI 205 (251)
T ss_pred ccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999999999999999977777767666555555555444
|
|
| >PRK07396 dihydroxynaphthoic acid synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=339.28 Aligned_cols=212 Identities=18% Similarity=0.233 Sum_probs=183.1
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
.++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++++.... ....+
T Consensus 11 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~-~~~~~ 89 (273)
T PRK07396 11 EYEDILYKSADGIAKITINRPEVRNAFRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGG-YVDDD 89 (273)
T ss_pred CCcceEEEecCCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhccc-ccchh
Confidence 466799999999999999999999999999999999999999999999999999999 6999999999864211 00111
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
....+ ....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 90 ~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~~~~~~l~~~vG~~~ 167 (273)
T PRK07396 90 GVPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGYGASYLARIVGQKK 167 (273)
T ss_pred hhhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCCcEEecccccccccCCchHHHHHHHHhhHHH
Confidence 11111 233567788999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||+|||++++++++.+.+...+..|..+....|.+.
T Consensus 168 a~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 224 (273)
T PRK07396 168 AREIWFLCRQYDAQEALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAAL 224 (273)
T ss_pred HHHHHHhCCCcCHHHHHHcCCcCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999988877777666655666655554
|
|
| >COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=335.59 Aligned_cols=213 Identities=25% Similarity=0.367 Sum_probs=188.6
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
.+..+.++.+++|++|+||||+++|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++.. ......
T Consensus 3 ~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~---~~~~~~ 79 (257)
T COG1024 3 TYETILVEREDGIAVITLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLS---PEDGNA 79 (257)
T ss_pred CCCeeEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhc---ccchhH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999874 111122
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
...+....+.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++++|++|.. +
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~a~f~~pe~~iGl~Pg~g~~~~l~r~~G~~~a 159 (257)
T COG1024 80 AENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAEDAKFGLPEVNLGLLPGDGGTQRLPRLLGRGRA 159 (257)
T ss_pred HHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCCcEecCcccccccCCCCcHHHHHHHhcCHHHH
Confidence 225667777899999999999999999999999999999999999999999999999999999889999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccC-ChHHHHHHHhhhhhccccccHHHHHHHHhc
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLN-GVRYTALYFTSLCVSSLCYSSYAAYNCFLS 254 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (269)
+++++||+.++++||+++||||+++++ +++++.+.+.+...+..|.+....+..+..
T Consensus 160 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~~~~a~~~~k~~~~~ 217 (257)
T COG1024 160 KELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAAPPLALAATKRLVRA 217 (257)
T ss_pred HHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999999996 699999888888877655544444444443
|
|
| >PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=334.56 Aligned_cols=206 Identities=27% Similarity=0.430 Sum_probs=186.4
Q ss_pred EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHH
Q 024298 44 LVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFF 123 (269)
Q Consensus 44 ~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 123 (269)
.++.+|+|++|+||+|++.|++|.+++.+|.++|+.++.|+++++||++|.+++||+|.|+.++... +.+....+.
T Consensus 1 ~~~~~~~v~~i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~~G~Dl~~~~~~----~~~~~~~~~ 76 (245)
T PF00378_consen 1 KYEIEDGVATITLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFCAGADLKEFLNS----DEEEAREFF 76 (245)
T ss_dssp EEEEETTEEEEEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESBESB-HHHHHHH----HHHHHHHHH
T ss_pred CEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccccccchhhhhcc----ccccccccc
Confidence 4789999999999999989999999999999999999999999999999999999999999998875 355667888
Q ss_pred HHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHhc
Q 024298 124 ETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLAL 202 (269)
Q Consensus 124 ~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~l 202 (269)
+.++.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++++++
T Consensus 77 ~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~r~~g~~~a~~l~l 156 (245)
T PF00378_consen 77 RRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAEDAKFGFPEVRLGIFPGAGGTFRLPRLIGPSRARELLL 156 (245)
T ss_dssp HHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETTTEEETGGGGGTSSSTSTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccchhhhhheeecccccccccccccccccceEEeecccceeeeecccCcccccccccccceeeeccccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999995 799999
Q ss_pred cCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 203 TGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 203 tG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+|++++|+||+++||||+|+|++++.+++...+...+..|..+....|...
T Consensus 157 ~g~~~~a~eA~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~ 207 (245)
T PF00378_consen 157 TGEPISAEEALELGLVDEVVPDEELDEEALELAKRLAAKPPSALRATKKAL 207 (245)
T ss_dssp HTCEEEHHHHHHTTSSSEEESGGGHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccccchhHHHHhhcceeEEcCchhhhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999999999999999966666666555444444444433
|
Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A .... |
| >PRK03580 carnitinyl-CoA dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-47 Score=336.36 Aligned_cols=209 Identities=18% Similarity=0.284 Sum_probs=181.5
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
|++.+.++++++|++|+||||+ .|++|.+++.+|.++++.++.|+++++|||||.| ++||+|.|++++.... .. .
T Consensus 1 ~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~--~~-~ 76 (261)
T PRK03580 1 MSESLHTTRNGSILEITLDRPK-ANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGE--AP-D 76 (261)
T ss_pred CCceEEEEEECCEEEEEECCcc-ccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccC--cc-h
Confidence 3456899999999999999996 5999999999999999999999999999999999 7999999999875321 11 1
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
..+......++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 77 --~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~vg~~~ 154 (261)
T PRK03580 77 --ADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKRLPPAI 154 (261)
T ss_pred --hhhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCCCEEeCcccccCcCCCccHHHHHHHHhCHHH
Confidence 11112223456788999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++++||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 155 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 211 (261)
T PRK03580 155 ANEMVMTGRRMDAEEALRWGIVNRVVPQAELMDRARELAQQLVNSAPLAIAALKEIY 211 (261)
T ss_pred HHHHHHhCCccCHHHHHHcCCCcEecCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999988877777666665665555544
|
|
| >PRK06210 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=338.22 Aligned_cols=215 Identities=23% Similarity=0.283 Sum_probs=182.2
Q ss_pred ccCcEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEGRA-KSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~~~-~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
.|+.+.+++++ +|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.|++||+|.|++++..........
T Consensus 3 ~~~~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~ 82 (272)
T PRK06210 3 AYDAVLYEVADSGVAVITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRR 82 (272)
T ss_pred CcceEEEEECCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccc
Confidence 45779999998 99999999999999999999999999999999999999999999999999999999875421110000
Q ss_pred --hHHHH----HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHh
Q 024298 118 --DFKNF----FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSH 191 (269)
Q Consensus 118 --~~~~~----~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r 191 (269)
....+ ...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~ 162 (272)
T PRK06210 83 DTDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADGAKFTTAFARRGLIAEHGISWILPR 162 (272)
T ss_pred cccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCCCEEechHHhcCCCCCCchhhhhHh
Confidence 00011 112345677899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhcc-ccccHHHHHHHHh
Q 024298 192 LPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSS-LCYSSYAAYNCFL 253 (269)
Q Consensus 192 ~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~ 253 (269)
++|.. +++|+++|++++|+||+++||||+++|++++++++.+.+...+. .+..+....|...
T Consensus 163 ~ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~p~a~~~~K~~l 226 (272)
T PRK06210 163 LVGHANALDLLLSARTFYAEEALRLGLVNRVVPPDELMERTLAYAEDLARNVSPASMAVIKRQL 226 (272)
T ss_pred hhCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99995 79999999999999999999999999999999998887777664 2333444444433
|
|
| >PRK07659 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=335.45 Aligned_cols=208 Identities=23% Similarity=0.328 Sum_probs=184.4
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHH
Q 024298 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (269)
Q Consensus 41 ~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (269)
+.+.++++++|++|+||||++.|++|.+++.+|.++++.+ .|+++++|||+|.|++||+|.|++++... .......
T Consensus 6 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~---~~~~~~~ 81 (260)
T PRK07659 6 ESVVVKYEGRVATIMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSS---NDESKFD 81 (260)
T ss_pred ceEEEEeeCCEEEEEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhc---cCchhHH
Confidence 5699999999999999999999999999999999999999 58899999999999999999999987542 1122234
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHH
Q 024298 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEY 199 (269)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~ 199 (269)
.+...+++++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 82 ~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vg~~~a~~ 161 (260)
T PRK07659 82 GVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADISAKLAMNFIGIGLIPDGGGHFFLQKRVGENKAKQ 161 (260)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCCCEEcCchhhcCCCCCCchhhhHHHhcCHHHHHH
Confidence 4556677888899999999999999999999999999999999999999999999999999999999999999995 899
Q ss_pred HhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++|++++|+||+++||||+++ ++++++++.+.+...+..|..+.+..|...
T Consensus 162 l~ltg~~~~a~eA~~~Glv~~vv-~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l 214 (260)
T PRK07659 162 IIWEGKKLSATEALDLGLIDEVI-GGDFQTAAKQKISEWLQKPLKAMIETKQIY 214 (260)
T ss_pred HHHhCCccCHHHHHHcCChHHHh-hhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999 788988877777777666665665555444
|
|
| >PRK11423 methylmalonyl-CoA decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-47 Score=335.00 Aligned_cols=208 Identities=16% Similarity=0.199 Sum_probs=183.5
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-C-CCccccCChhHHHHhhccCChh
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGA-G-RAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~-g-~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
++.+.++++++|++||||||++.|++|.+++.+|.++++.++.|+ +++|||||. | ++||+|.|++++.... .+
T Consensus 3 ~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~--~~-- 77 (261)
T PRK11423 3 MQYVNVVTINKIATITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGG--RD-- 77 (261)
T ss_pred ccceEEEeECCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhcc--cc--
Confidence 457899999999999999999999999999999999999999887 999999996 3 8999999999875321 11
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
...+.+.+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 78 -~~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~g~~~~l~~~vg~~~ 156 (261)
T PRK11423 78 -PLSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAASTSTFAMTPANLGVPYNLSGILNFTNDAGFHI 156 (261)
T ss_pred -HHHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCCCEecCchhhcCCCCCccHHHHHHHHhHHHH
Confidence 123345566788899999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||+|||++++++.+.+.+...+..+..+.+..|...
T Consensus 157 a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~~ 213 (261)
T PRK11423 157 VKEMFFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEQL 213 (261)
T ss_pred HHHHHHcCCCcCHHHHHHcCCcCcccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 899999999999999999999999999999999988888777666555555555544
|
|
| >PRK07509 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-47 Score=335.18 Aligned_cols=212 Identities=23% Similarity=0.268 Sum_probs=181.0
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|++.+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||+|.|++||+|.|+.++.... ......
T Consensus 1 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~-~~~~~~ 79 (262)
T PRK07509 1 MMDRVSVTIEDGIADVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSP-GNAVKL 79 (262)
T ss_pred CCceEEEEeeCCEEEEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhccc-chhhhh
Confidence 5778999999999999999999999999999999999999999999999999999999999999999875421 111111
Q ss_pred HH----HHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhh
Q 024298 119 FK----NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194 (269)
Q Consensus 119 ~~----~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g 194 (269)
.. .....+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~~g 159 (262)
T PRK07509 80 LFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPDTKLSIMEAKWGLVPDMAGTVSLRGLVR 159 (262)
T ss_pred HhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCCCEeecchhccCCCCCchHHHHHHHHhC
Confidence 11 11233455677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 195 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
.. +++++++|++++|+||+++||||+++++ +++++.+.+...+..|..+....|.+.
T Consensus 160 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~--~~~~a~~~a~~l~~~~~~~~~~~K~~l 217 (262)
T PRK07509 160 KDVARELTYTARVFSAEEALELGLVTHVSDD--PLAAALALAREIAQRSPDAIAAAKRLI 217 (262)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCChhhhhch--HHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 95 8999999999999999999999999964 567777767666666555555555444
|
|
| >PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-47 Score=348.41 Aligned_cols=215 Identities=54% Similarity=0.926 Sum_probs=183.1
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
.+.|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|+.++............
T Consensus 36 ~~~V~~e~~g~v~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~ 115 (401)
T PLN02157 36 DYQVLVEGSGCSRTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAI 115 (401)
T ss_pred CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHH
Confidence 55688999999999999999999999999999999999999999999999999999999999999988643211112223
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEY 199 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~ 199 (269)
..++...+.+...|.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+++
T Consensus 116 ~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~a~fa~PE~~iGl~Pd~G~s~~L~rl~G~~a~~ 195 (401)
T PLN02157 116 REFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDRTIFATPETIIGFHPDAGASFNLSHLPGRLGEY 195 (401)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCCCEEEChhhhcCCCCCccHHHHHHHhhhHHHHH
Confidence 34555555677889999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred HhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHhc
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFLS 254 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (269)
|++||++++|+||+++||||++||++++.+....++......|..+...++.+..
T Consensus 196 L~LTG~~i~A~eA~~~GLv~~vVp~~~l~~~~~~~~~i~~~~p~av~~~k~~~~~ 250 (401)
T PLN02157 196 LGLTGLKLSGAEMLACGLATHYIRSEEIPVMEEQLKKLLTDDPSVVESCLEKCAE 250 (401)
T ss_pred HHHcCCcCCHHHHHHcCCceEEeCHhHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999998544333333344455555555555543
|
|
| >PRK06495 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-47 Score=332.28 Aligned_cols=209 Identities=21% Similarity=0.299 Sum_probs=181.4
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
||+.+.++++++|++|+||||+ .|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++..... ....
T Consensus 2 ~~~~i~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~--~~~~ 78 (257)
T PRK06495 2 MMSQLKLEVSDHVAVVTLDNPP-VNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIK--GPGD 78 (257)
T ss_pred CcceEEEEeeCCEEEEEECCCc-cccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccC--Cchh
Confidence 5778999999999999999998 599999999999999999999999999999999999999999998754211 1122
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
...+......++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|+. |+++++++++|.. +
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~---~~~~~l~~~~g~~~a 155 (257)
T PRK06495 79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASENAVFGLPEIDVGLA---GGGKHAMRLFGHSLT 155 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCCCEeeChhhccCcc---ccHHHHHHHhCHHHH
Confidence 23344556678888999999999999999999999999999999999999999999999996 4567899999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++|+++|++++|+||+++||||+++|++++++++.+.+...+..|..+.+..|+..
T Consensus 156 ~~lll~g~~~~a~eA~~~GLv~~vv~~~~~~~~a~~~a~~l~~~~~~a~~~~K~~l 211 (257)
T PRK06495 156 RRMMLTGYRVPAAELYRRGVIEACLPPEELMPEAMEIAREIASKSPLATRLAKDAL 211 (257)
T ss_pred HHHHHcCCeeCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988777777666555555555444
|
|
| >PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=333.98 Aligned_cols=212 Identities=19% Similarity=0.206 Sum_probs=180.8
Q ss_pred ccCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC--CCccccCChhHHHHhhccCC
Q 024298 39 LQDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG--RAFCSGGDVIALYQLLNEGK 115 (269)
Q Consensus 39 ~~~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g--~~F~~G~Dl~~~~~~~~~~~ 115 (269)
.++.+.+++ +++|++||||||+ .|++|.+++.+|.++++++++|+++++|||||.| ++||+|.|+.++.... ..
T Consensus 9 ~~~~i~~~~~~~~Va~itlnr~~-~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~--~~ 85 (278)
T PLN03214 9 ATPGVRVDRRPGGIAVVWLAKEP-VNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPK--TS 85 (278)
T ss_pred CCCceEEEEcCCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccc--cc
Confidence 455799998 6999999999985 6999999999999999999999999999999998 6999999999875311 11
Q ss_pred hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccc-cCCCchHHHHHhhhh
Q 024298 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGF-HPDAGASFYLSHLPG 194 (269)
Q Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl-~p~~g~~~~l~r~~g 194 (269)
.+....+......++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ +|++++++++++++|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~~p~~~~~~~l~~~~G 165 (278)
T PLN03214 86 AARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTEGTMGLNEVALGIPVPKFWARLFMGRVID 165 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCCCEecCcHHHhCCCCCChhHHHHHHHhcC
Confidence 1112233344456778899999999999999999999999999999999999999999999999 599999999999999
Q ss_pred HH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 195 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
.. +++++++|++++++||+++||||+|||++++++++.+.+...+..|..+....|.+.
T Consensus 166 ~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~l~~~~~~a~~~~K~~l 225 (278)
T PLN03214 166 RKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAMERALKLPSAARAATKALL 225 (278)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCcEecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 95 899999999999999999999999999999999877766666555554555445444
|
|
| >PRK08788 enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-46 Score=331.59 Aligned_cols=220 Identities=16% Similarity=0.152 Sum_probs=182.0
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEcC-CCCccccCChhHHHHhhcc
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEE-----NPDIGFVLMKGA-GRAFCSGGDVIALYQLLNE 113 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~-----d~~v~~vVltg~-g~~F~~G~Dl~~~~~~~~~ 113 (269)
+-.+.++.+++|++|+|| |++.|++|.+++.+|.+++++++. |+++++|||+|. |++||+|.|+.++......
T Consensus 16 ~~~i~~e~~~~ia~itl~-p~~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~ 94 (287)
T PRK08788 16 QLRVYYEEERNVMWMYMR-AQPRPCFNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRA 94 (287)
T ss_pred ceEEEEEccCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccc
Confidence 344777778999999996 888999999999999999999998 899999999999 7999999999987532111
Q ss_pred CChhhHHHHHHHHHHHHHHHc---cCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHH
Q 024298 114 GKFEDFKNFFETLYQFVYLQG---TFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLS 190 (269)
Q Consensus 114 ~~~~~~~~~~~~~~~l~~~i~---~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~ 190 (269)
.+.+....+.+.+...+.++. .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pev~lGl~p~~g~~~~l~ 174 (287)
T PRK08788 95 GDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERGAKMGFPEILFNLFPGMGAYSFLA 174 (287)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCCCEeeCchhhhCcCCCchHHHHHH
Confidence 111111222222233333333 79999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHhcCCccch
Q 024298 191 HLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFLSLPDRDF 260 (269)
Q Consensus 191 r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (269)
+++|.. +++++++|+.++++||++|||||+++|++++++++.+.+...+..|.+..++++.+......++
T Consensus 175 ~~vG~~~A~ellltG~~l~A~eA~~~GLV~~vv~~~el~~~a~~~a~~ia~~~~~~~a~k~~~~~~~~~~~ 245 (287)
T PRK08788 175 RRVGPKLAEELILSGKLYTAEELHDMGLVDVLVEDGQGEAAVRTFIRKSKRKLNGWRAMLRARRRVNPLSL 245 (287)
T ss_pred HHhhHHHHHHHHHcCCCCCHHHHHHCCCCcEecCchHHHHHHHHHHHHHhcCccHHHHHHHHHHhhccCCH
Confidence 999995 8999999999999999999999999999999999888887777667767777665554444333
|
|
| >PRK07827 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=331.18 Aligned_cols=212 Identities=19% Similarity=0.188 Sum_probs=183.7
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
.+..+.++++++|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.|++||+|.|++++..... ...+.
T Consensus 4 ~~~~i~~~~~~~v~~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~ 82 (260)
T PRK07827 4 VDTLVRYAVDGGVATLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVLTHTGGTFCAGADLSEAGGGGG-DPYDA 82 (260)
T ss_pred CCcceEEEeeCCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEEcCCCCccCCcChHHHhhccc-CchhH
Confidence 34568899999999999999999999999999999999999999999999999999999999999998754210 11112
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHH
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGE 198 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~ 198 (269)
...+...+.++++.+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++++++..++
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~l~~~~a~ 162 (260)
T PRK07827 83 AVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPESTFALTEARIGVAPAIISLTLLPRLSPRAAA 162 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCCCEEeCcccccCCCCCcccchhHHhhhHHHHH
Confidence 23345566778889999999999999999999999999999999999999999999999999999999999999876789
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++|++++|+||+++||||++++ ++++++...+...+..|..+.+..|.+.
T Consensus 163 ~l~l~g~~~~a~eA~~~Glv~~v~~--~l~~~a~~~a~~la~~~~~a~~~~K~~l 215 (260)
T PRK07827 163 RYYLTGEKFGAAEAARIGLVTAAAD--DVDAAVAALLADLRRGSPQGLAESKALT 215 (260)
T ss_pred HHHHhCCccCHHHHHHcCCcccchH--HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999975 4888877777777666655666655554
|
|
| >PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=343.11 Aligned_cols=190 Identities=39% Similarity=0.719 Sum_probs=169.7
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhhH
Q 024298 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 41 ~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
+.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|+.++............
T Consensus 3 ~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (342)
T PRK05617 3 DEVLAEVEGGVGVITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAA 82 (342)
T ss_pred ceEEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhH
Confidence 3588999999999999999999999999999999999999999999999999999 999999999987543211111111
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEY 199 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~ 199 (269)
..++.....++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..+++
T Consensus 83 ~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~g~~~~L~r~~g~~a~~ 162 (342)
T PRK05617 83 DRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTERTKMAMPETGIGFFPDVGGTYFLSRAPGALGTY 162 (342)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCCCEeeCCccccCcCCCccceeEehhcccHHHHH
Confidence 13444445678889999999999999999999999999999999999999999999999999999999999998877899
Q ss_pred HhccCCCCCHHHHHhcCccceeccCChHHHH
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
++++|++++|+||+++||||+++|++++++.
T Consensus 163 llltG~~i~A~eA~~~GLv~~vv~~~~l~~~ 193 (342)
T PRK05617 163 LALTGARISAADALYAGLADHFVPSADLPAL 193 (342)
T ss_pred HHHcCCCCCHHHHHHcCCcceecCHHHHHHH
Confidence 9999999999999999999999999998865
|
|
| >PLN02921 naphthoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-46 Score=336.96 Aligned_cols=212 Identities=17% Similarity=0.222 Sum_probs=182.4
Q ss_pred ccCcEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCC
Q 024298 39 LQDQVLVEG--RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGK 115 (269)
Q Consensus 39 ~~~~v~~~~--~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~ 115 (269)
.|+.|.+++ +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.| ++||+|+|+.++.... ...
T Consensus 63 ~~~~i~~~~~~~~~Va~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~-~~~ 141 (327)
T PLN02921 63 EFTDIIYEKAVGEGIAKITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDG-YVG 141 (327)
T ss_pred CCceEEEEEecCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhccc-ccc
Confidence 577899998 589999999999999999999999999999999999999999999999 8999999999764310 011
Q ss_pred hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH
Q 024298 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY 195 (269)
Q Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~ 195 (269)
.+....+ ....++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|.+|+++++++++|.
T Consensus 142 ~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~A~f~~pe~~~Gl~p~~gg~~~L~rliG~ 219 (327)
T PLN02921 142 PDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAVFGQTGPKVGSFDAGYGSSIMARLVGQ 219 (327)
T ss_pred hhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence 1111111 12346778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 196 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
. +++|+++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|...
T Consensus 220 ~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~al~~~K~~l 278 (327)
T PLN02921 220 KKAREMWFLARFYTASEALKMGLVNTVVPLDELEGETVKWCREILRNSPTAIRVLKSAL 278 (327)
T ss_pred HHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5 899999999999999999999999999999999987777766666555555555444
|
|
| >PRK06072 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-46 Score=325.72 Aligned_cols=201 Identities=23% Similarity=0.335 Sum_probs=175.6
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHH
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (269)
|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|++++... ....+
T Consensus 2 i~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~-------~~~~~ 74 (248)
T PRK06072 2 IKVESREGYAIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPD-------FAIDL 74 (248)
T ss_pred eEEEEECCEEEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhh-------hHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999987531 11233
Q ss_pred HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhc
Q 024298 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLAL 202 (269)
Q Consensus 123 ~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~l 202 (269)
.+.++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.+++++++
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~~~~~~Gl~p~~g~~~~l~~~~g~~a~~lll 154 (248)
T PRK06072 75 RETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLASDTGVAYFLLKLTGQRFYEILV 154 (248)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEecchhhcCcCCCchHHHHHHHHhhHHHHHHHH
Confidence 44566788889999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred cCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 203 TGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 203 tG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+|++++|+||+++||||++ +++++++.+.+...+..|..+....|.+.
T Consensus 155 ~g~~~~a~eA~~~Glv~~~---~~~~~~a~~~a~~la~~~~~a~~~~K~~l 202 (248)
T PRK06072 155 LGGEFTAEEAERWGLLKIS---EDPLSDAEEMANRISNGPFQSYIAAKRMI 202 (248)
T ss_pred hCCccCHHHHHHCCCcccc---chHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999963 35677766666666666555555555444
|
|
| >PRK08290 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-46 Score=332.20 Aligned_cols=212 Identities=19% Similarity=0.212 Sum_probs=179.2
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhc-c-----
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLN-E----- 113 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~-~----- 113 (269)
++.+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||||.|++||+|.|+.++..... .
T Consensus 3 ~~~v~~~~~~~Va~ItlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~ 82 (288)
T PRK08290 3 YEYVRYEVAGRIARITLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQ 82 (288)
T ss_pred CceEEEEeeCCEEEEEecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcccccccccccccccc
Confidence 5668999999999999999999999999999999999999999999999999999999999999998632111 0
Q ss_pred -----------CC-hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccC
Q 024298 114 -----------GK-FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHP 181 (269)
Q Consensus 114 -----------~~-~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p 181 (269)
.. ..........+..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|+ |
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~a~f~~pe~~lGl-~ 161 (288)
T PRK08290 83 HPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDDAFFSDPVVRMGI-P 161 (288)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCCCEecCcccccCc-C
Confidence 00 0011112234556778899999999999999999999999999999999999999999999999 4
Q ss_pred CCchHHHHHhhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 182 DAGASFYLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 182 ~~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+ ++.+++++++|.. +++|+++|++|+|+||+++||||++||++++++++.+.+...+..|..+....|.+.
T Consensus 162 ~-~~~~~l~~~iG~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~~ 233 (288)
T PRK08290 162 G-VEYFAHPWELGPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDELEAETLELARRIAAMPPFGLRLTKRAV 233 (288)
T ss_pred c-chHHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4 4567789999995 799999999999999999999999999999999977777777666665665555544
|
|
| >PRK08272 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-46 Score=333.32 Aligned_cols=212 Identities=19% Similarity=0.206 Sum_probs=178.7
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccC--C-
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG--K- 115 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~--~- 115 (269)
.++.+.++++++|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|.|+.++....... .
T Consensus 8 ~~~~v~~e~~~~V~~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~ 87 (302)
T PRK08272 8 NLKTMTYEVTGRIARITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGG 87 (302)
T ss_pred CCCeEEEEeECCEEEEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccccccc
Confidence 5678999999999999999999999999999999999999999999999999999999999999999876432100 0
Q ss_pred ----------------hhhH--HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccc
Q 024298 116 ----------------FEDF--KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQM 177 (269)
Q Consensus 116 ----------------~~~~--~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~ 177 (269)
+... ......+..++..+.++||||||+|||+|+|||++|+++||++||+++++|++||+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~a~f~~pe~~~ 167 (302)
T PRK08272 88 AYPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRV 167 (302)
T ss_pred ccccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCCCEecCcchhc
Confidence 0000 1223455667888999999999999999999999999999999999999999999998
Q ss_pred cccCCCchHHHHHhhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 178 GFHPDAGASFYLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 178 Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
|.+|+. ..+++++|.. +++|+++|++|+|+||+++||||+++|++++++++.+.+...+..|..+.+..|.+.
T Consensus 168 gg~~~~---~~~~~~vG~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~la~~ia~~~~~a~~~~K~~l 241 (302)
T PRK08272 168 WGVPAT---GMWAYRLGPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEELDERTERLVERIAAVPVNQLAMVKLAV 241 (302)
T ss_pred ccCChH---HHHHHHhhHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666643 3567789995 899999999999999999999999999999999977777666666655555555443
|
|
| >PRK08321 naphthoate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-46 Score=333.03 Aligned_cols=214 Identities=19% Similarity=0.213 Sum_probs=180.8
Q ss_pred cCcEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-------CCccccCChhHHHHh
Q 024298 40 QDQVLVEG--RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-------RAFCSGGDVIALYQL 110 (269)
Q Consensus 40 ~~~v~~~~--~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-------~~F~~G~Dl~~~~~~ 110 (269)
+.++.+++ +++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++++...
T Consensus 22 ~~~i~~~~~~~~~va~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 22 FTDITYHRAVDQGTVRIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred ceeEEEEEecCCCEEEEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 44688888 899999999999999999999999999999999999999999999998 599999999875321
Q ss_pred h---ccCCh-h--hHHHH-HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEe-CCceEecCcccccccCC
Q 024298 111 L---NEGKF-E--DFKNF-FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVT-DKTVFSNPETQMGFHPD 182 (269)
Q Consensus 111 ~---~~~~~-~--~~~~~-~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~-~~a~f~~pe~~~Gl~p~ 182 (269)
. ..... + ..... ......+.+.+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~ 181 (302)
T PRK08321 102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDG 181 (302)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCCCEEECCccccccCCC
Confidence 0 00000 0 00111 1112346677889999999999999999999999999999999 69999999999999999
Q ss_pred CchHHHHHhhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 183 AGASFYLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 183 ~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|.. +++++++|++++|+||+++||||++||++++++++.+.+...+..|..+.+..|.+.
T Consensus 182 ~~~~~~L~r~vG~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 253 (302)
T PRK08321 182 GYGSAYLARQVGQKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAELETEALEWAREINGKSPTAMRMLKYAF 253 (302)
T ss_pred chHHHHHHHHhCHHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999995 899999999999999999999999999999999988877777776666666655554
|
|
| >PRK07938 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-46 Score=325.41 Aligned_cols=201 Identities=19% Similarity=0.171 Sum_probs=173.3
Q ss_pred EEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHH
Q 024298 46 EGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFET 125 (269)
Q Consensus 46 ~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~ 125 (269)
+++++|++|+||||++ |++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++... ..........+.
T Consensus 7 ~~~~~v~~itlnrp~~-Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~---~~~~~~~~~~~~ 82 (249)
T PRK07938 7 TPEPGIAEVTVDYPPV-NALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQAT---PGFTALIDANRG 82 (249)
T ss_pred ccCCCEEEEEECCCCc-ccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhc---cchhHHHHHHHH
Confidence 3578999999999985 999999999999999999999999999999999999999999987531 111222223344
Q ss_pred HHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHhccC
Q 024298 126 LYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLALTG 204 (269)
Q Consensus 126 ~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG 204 (269)
...++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ |+++++++++|.. +++++++|
T Consensus 83 ~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~a~f~~pe~~~G~~---g~~~~l~~~vg~~~a~~l~ltg 159 (249)
T PRK07938 83 CFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDDATFGLPEVDRGAL---GAATHLQRLVPQHLMRALFFTA 159 (249)
T ss_pred HHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCCCEeeCccceecCc---hhHHHHHHhcCHHHHHHHHHhC
Confidence 5667888999999999999999999999999999999999999999999999986 4567899999995 89999999
Q ss_pred CCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 205 EKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 205 ~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++|+||+++||||++||++++++++.+.+...+..|..+....|...
T Consensus 160 ~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 208 (249)
T PRK07938 160 ATITAAELHHFGSVEEVVPRDQLDEAALEVARKIAAKDTRVIRAAKEAL 208 (249)
T ss_pred CcCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999988877776666555555555544
|
|
| >PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-45 Score=340.41 Aligned_cols=189 Identities=43% Similarity=0.755 Sum_probs=169.1
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
.++.+.++++++|++|+||||+++|++|.+|+.+|.++++.++.|++|++|||+|.|++||+|+|++++....... ..
T Consensus 9 ~~~~v~~~~~~~v~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~--~~ 86 (379)
T PLN02874 9 AEEVVLGEEKGRVRVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESD--DS 86 (379)
T ss_pred CCCceEEEEECCEEEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccc--hH
Confidence 4456889999999999999999999999999999999999999999999999999999999999999875421111 11
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHH
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGE 198 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~ 198 (269)
........+.+...+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..++
T Consensus 87 ~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~iGl~p~~g~~~~L~rl~g~~a~ 166 (379)
T PLN02874 87 CLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEKTVFATPEASVGFHTDCGFSYILSRLPGHLGE 166 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCCeEEeccccccCcCCChhHHHHHHhhhHHHHH
Confidence 22233344456778999999999999999999999999999999999999999999999999999999999999998789
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHH
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYT 229 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~ 229 (269)
+|++||++++++||+++||||++||++++++
T Consensus 167 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~ 197 (379)
T PLN02874 167 YLALTGARLNGKEMVACGLATHFVPSEKLPE 197 (379)
T ss_pred HHHHcCCcccHHHHHHcCCccEEeCHHHHHH
Confidence 9999999999999999999999999998876
|
|
| >TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=324.09 Aligned_cols=199 Identities=22% Similarity=0.247 Sum_probs=168.2
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHH
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (269)
|.++++++|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++.. ......
T Consensus 3 v~~~~~~~v~~itlnrp~-~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~-------~~~~~~ 74 (251)
T TIGR03189 3 VWLERDGKLLRLRLARPK-ANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMP-------DQCAAM 74 (251)
T ss_pred EEEEeeCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCc-------hhHHHH
Confidence 678889999999999997 599999999999999999999999999999999999999999987531 111233
Q ss_pred HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHh
Q 024298 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLA 201 (269)
Q Consensus 123 ~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ 201 (269)
......++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++ ++++|++++|+. +++|+
T Consensus 75 ~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~-~~~~l~~~vg~~~a~~l~ 153 (251)
T TIGR03189 75 LASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPDAKLGQPEIVLGVFAPA-ASCLLPERMGRVAAEDLL 153 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCc-hHHHHHHHhCHHHHHHHH
Confidence 4455678889999999999999999999999999999999999999999999999999874 578899999995 89999
Q ss_pred ccCCCCCHHHHHhcCccceeccCChHHHHHHHh-hhhhccccccHHHHHHHH
Q 024298 202 LTGEKLNGVEMIACGLATHYTLNGVRYTALYFT-SLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (269)
++|++++|+||+++||||+|+|+.+ +++.+. +...+..|..+.+..|..
T Consensus 154 ltg~~~~a~eA~~~Glv~~v~~~~~--~~a~~~~a~~la~~~p~a~~~~K~~ 203 (251)
T TIGR03189 154 YSGRSIDGAEGARIGLANAVAEDPE--NAALAWFDEHPAKLSASSLRFAVRA 203 (251)
T ss_pred HcCCCCCHHHHHHCCCcceecCcHH--HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999998644 333333 444444444444444433
|
This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. |
| >PRK07854 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-46 Score=322.92 Aligned_cols=197 Identities=21% Similarity=0.274 Sum_probs=170.3
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHH
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (269)
+.++++++|++||||||++.|++|.+|+.+|.+++++++.+ ++++|||||.|++||+|.|+++... ...+
T Consensus 2 ~~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~---------~~~~ 71 (243)
T PRK07854 2 IGVTRDGQVLTIELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY---------ADDF 71 (243)
T ss_pred ceEEEeCCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh---------HHHH
Confidence 57888999999999999999999999999999999999865 8999999999999999999985211 1223
Q ss_pred HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHh
Q 024298 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLA 201 (269)
Q Consensus 123 ~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ 201 (269)
.+.+..+++.+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|+. +++++
T Consensus 72 ~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~G~~~a~~l~ 151 (243)
T PRK07854 72 PDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRARAML 151 (243)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCCCEEeccccccccCCCccHHHHHHHHhCHHHHHHHH
Confidence 44556788889999999999999999999999999999999999999999999999999999999999999995 89999
Q ss_pred ccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 202 LTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++|++++|+||+++||||+|++ ++ ++.+.+...+..|..+.+..|.+.
T Consensus 152 ltg~~~~a~eA~~~Glv~~v~~---~~-~a~~~a~~l~~~~~~a~~~~K~~l 199 (243)
T PRK07854 152 LGAEKLTAEQALATGMANRIGT---LA-DAQAWAAEIAGLAPLALQHAKRVL 199 (243)
T ss_pred HcCCCcCHHHHHHCCCcccccC---HH-HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999975 23 555555555555555555555444
|
|
| >PRK06213 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=318.10 Aligned_cols=207 Identities=15% Similarity=0.101 Sum_probs=179.5
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|++++.++++++|++|+||||+ .|++|.+++.+|.++++.++ +++++||++|.|++||+|.|++++... .+.
T Consensus 1 ~~~~i~~~~~~~v~~itln~~~-~Nal~~~~~~~l~~~l~~~~--~~~~vvvl~g~g~~F~~G~Dl~~~~~~-----~~~ 72 (229)
T PRK06213 1 MSELVSYTLEDGVATITLDDGK-VNALSPAMIDALNAALDQAE--DDRAVVVITGQPGIFSGGFDLKVMTSG-----AQA 72 (229)
T ss_pred CcceEEEEecCCEEEEEeCCCC-CCCCCHHHHHHHHHHHHHhh--ccCcEEEEeCCCCceEcCcCHHHHhcc-----hHh
Confidence 3557899999999999999984 69999999999999999988 457999999999999999999987531 222
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC-ceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
...+......++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++++..++++.+|..
T Consensus 73 ~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g~~~ 152 (229)
T PRK06213 73 AIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLTPSA 152 (229)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcCHHH
Confidence 3445566677888999999999999999999999999999999999999 99999999999998888888899999985
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||+|+|++++.+++.+.+...+..|..+....|...
T Consensus 153 a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 209 (229)
T PRK06213 153 FQRAVINAEMFDPEEAVAAGFLDEVVPPEQLLARAQAAARELAGLNMGAHAATKLKV 209 (229)
T ss_pred HHHHHHcCcccCHHHHHHCCCceeccChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 799999999999999999999999999999999977766666665555555555444
|
|
| >PLN02988 3-hydroxyisobutyryl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=336.34 Aligned_cols=215 Identities=43% Similarity=0.750 Sum_probs=184.6
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
...|.++++++|++|+||||++.|+||.+|+.+|.++|+.++.|+++++|||+|.|++||+|+|++++............
T Consensus 8 ~~~v~~~~~~~i~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~ 87 (381)
T PLN02988 8 QSQVLVEEKSSVRILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLG 87 (381)
T ss_pred CCceEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHH
Confidence 34588899999999999999999999999999999999999999999999999999999999999987532211111222
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEY 199 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~ 199 (269)
..++...+.+...+.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+++
T Consensus 88 ~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~a~f~mPE~~iGl~Pd~G~s~~L~rl~G~~~~~ 167 (381)
T PLN02988 88 ANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATENTVFAMPETALGLFPDVGASYFLSRLPGFFGEY 167 (381)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCCcEEeChhhhcCcCCCccHHHHHHHHHHHHHHH
Confidence 23344444566788999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHhc
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFLS 254 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (269)
|++||++++|+||+++||||++||++++++.+.+.+......|..+..+++.+..
T Consensus 168 l~LTG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~la~~~~~~p~~~~~~~~~~~~ 222 (381)
T PLN02988 168 VGLTGARLDGAEMLACGLATHFVPSTRLTALEADLCRIGSNDPTFASTILDAYTQ 222 (381)
T ss_pred HHHcCCCCCHHHHHHcCCceEecCHhHHHHHHHHHHHhhccCHHHHHHHHHHhhc
Confidence 9999999999999999999999999999987777665445555556656665543
|
|
| >PRK12478 enoyl-CoA hydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=330.40 Aligned_cols=210 Identities=21% Similarity=0.258 Sum_probs=169.6
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHH-H---hh-ccC
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALY-Q---LL-NEG 114 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~-~---~~-~~~ 114 (269)
++.+.++++++|++|+||||+++|++|.+|+.+|.++|+.++.|+++++|||||.|++||+|.|+++.. . .. ...
T Consensus 4 ~~~v~~~~~~~Va~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~ 83 (298)
T PRK12478 4 FQTLLYTTAGPVATITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDG 83 (298)
T ss_pred ceEEEEeccCCEEEEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhccccc
Confidence 456899999999999999999999999999999999999999999999999999999999999998621 1 00 000
Q ss_pred ChhhHHHH---HH---HHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccc-cccCCCchHH
Q 024298 115 KFEDFKNF---FE---TLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQM-GFHPDAGASF 187 (269)
Q Consensus 115 ~~~~~~~~---~~---~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~-Gl~p~~g~~~ 187 (269)
..+....+ .. ....++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++ |+++ ++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~A~f~~pe~~l~G~~~--~~~~ 161 (298)
T PRK12478 84 RWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDDAVIGTPYSRMWGAYL--TGMW 161 (298)
T ss_pred ccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCCcEEeccccccccCCc--hhHH
Confidence 00111111 01 11235667889999999999999999999999999999999999999999997 8875 2333
Q ss_pred HHHhhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 188 YLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 188 ~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+ +++|.. +++|+++|++|+|+||+++||||+|||++++++++.+.+...+..|..+.+..|.+.
T Consensus 162 -~-~~vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l 226 (298)
T PRK12478 162 -L-YRLSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERLEARVAEVATELARIPLSQLQAQKLIV 226 (298)
T ss_pred -H-HHhhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 2 458884 899999999999999999999999999999999977776666555555555555443
|
|
| >PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=318.59 Aligned_cols=206 Identities=19% Similarity=0.236 Sum_probs=169.6
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
|+.+.++++++|++|+||||++.|++|.+++.+|.++++.++ +++++|||+|.|++||+|.|++++...... . ...
T Consensus 3 ~~~i~~~~~~~i~~itlnrp~~~Nal~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~-~-~~~ 78 (255)
T PRK07112 3 YQTIRVRQQGDVCFLQLHRPEAQNTINDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDA-G-RAD 78 (255)
T ss_pred CceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhcccc-c-hhh
Confidence 566999999999999999999999999999999999999998 359999999999999999999987542111 1 111
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
....+.+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|+++ ..++++++|.. ++
T Consensus 79 ~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~a~f~~pe~~~Gl~p~~~-~~~l~~~vg~~~a~ 157 (255)
T PRK07112 79 LIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADETAPFSLSELLFGLIPACV-LPFLIRRIGTQKAH 157 (255)
T ss_pred hhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCCCEEeCchhhhccCcchh-hHHHHHHhCHHHHH
Confidence 11233445688889999999999999999999999999999999999999999999999999865 46799999995 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
+++++|++++|+||+++||||+++|+++. .+.+.+...+..|..+.+..|.+
T Consensus 158 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~~--~~~~~a~~l~~~~p~a~~~~K~~ 209 (255)
T PRK07112 158 YMTLMTQPVTAQQAFSWGLVDAYGANSDT--LLRKHLLRLRCLNKAAVARYKSY 209 (255)
T ss_pred HHHHhCCcccHHHHHHcCCCceecCcHHH--HHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999997664 33444444444444444444433
|
|
| >PLN02267 enoyl-CoA hydratase/isomerase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=308.40 Aligned_cols=196 Identities=15% Similarity=0.152 Sum_probs=166.6
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEcCCCCccccCChhHHHHhhccCChhhHHH
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIG-FVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKN 121 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~-~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 121 (269)
+.++++++|++|+||||++ |++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++... ....+....
T Consensus 2 ~~~~~~~~v~~i~Lnrp~~-Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~--~~~~~~~~~ 78 (239)
T PLN02267 2 CTLEKRGNLFILTLTGDGE-HRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAA--GSAPSRLHL 78 (239)
T ss_pred ceeEecCCEEEEEeCCCCc-CcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhcc--ccCHHHHHH
Confidence 5778899999999999985 9999999999999999999998865 78889999999999999986431 111222233
Q ss_pred HHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEe-CCceEecCcccccccCCCchHHHHHhhhhH-HH-H
Q 024298 122 FFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVT-DKTVFSNPETQMGFHPDAGASFYLSHLPGY-LG-E 198 (269)
Q Consensus 122 ~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~-~a-~ 198 (269)
+...+.+++.++.++||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|+++++.++++++|. ++ +
T Consensus 79 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG~~~a~~ 158 (239)
T PLN02267 79 MVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARR 158 (239)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcChHHHHH
Confidence 44566778889999999999999999999999999999999998 568999999999997434457889999987 47 6
Q ss_pred HHhccCCCCCHHHHHhcCccceeccC-ChHHHHHHHhhhhhccc
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLN-GVRYTALYFTSLCVSSL 241 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~~~~~~~~~ 241 (269)
+++++|++++|+||+++||||+++|+ +++++++.+.+...+..
T Consensus 159 ~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~ 202 (239)
T PLN02267 159 DVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAAR 202 (239)
T ss_pred HHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999999985 68888877777666655
|
|
| >TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-43 Score=316.05 Aligned_cols=176 Identities=19% Similarity=0.315 Sum_probs=160.2
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhhHHHHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQF 129 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l 129 (269)
+++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++++..... ........+.+.++++
T Consensus 38 ~A~ItLNRP~k~NAls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~-~~~~~~~~~~~~~~~l 116 (360)
T TIGR03200 38 NAWIILDNPKQYNSYTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYA-GNPQEYRQYMRLFNDM 116 (360)
T ss_pred EEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcc-cChhHHHHHHHHHHHH
Confidence 556999999999999999999999999999999999999999999 69999999998765321 1122334455666778
Q ss_pred HHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHhccCCCCC
Q 024298 130 VYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLALTGEKLN 208 (269)
Q Consensus 130 ~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~i~ 208 (269)
+..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. |++++++|++++
T Consensus 117 ~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~A~Fg~PE~rlGl~P~~Ggt~rLprlvG~~rA~~llltGe~~s 196 (360)
T TIGR03200 117 VSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDLANFGQAGPKHGSAPIGGATDFLPLMIGCEQAMVSGTLCEPWS 196 (360)
T ss_pred HHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhhCHHHHHHHHHhCCcCc
Confidence 8899999999999999999999999999999999999999999999999999999999999999995 899999999999
Q ss_pred HHHHHhcCccceeccCChH
Q 024298 209 GVEMIACGLATHYTLNGVR 227 (269)
Q Consensus 209 a~eA~~~GLv~~vv~~~~l 227 (269)
|+||+++||||+++|+.++
T Consensus 197 A~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 197 AHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred HHHHHHcCChheecCchhc
Confidence 9999999999999999998
|
Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=339.76 Aligned_cols=198 Identities=19% Similarity=0.275 Sum_probs=177.9
Q ss_pred cEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHH
Q 024298 42 QVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (269)
Q Consensus 42 ~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (269)
.+.++. +++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|+|++++..... .......
T Consensus 7 ~i~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~~~~ 85 (715)
T PRK11730 7 TLQVDWLEDGIAELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFA-APEEELS 85 (715)
T ss_pred eEEEEEcCCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhcc-CCHHHHH
Confidence 577774 78999999999999999999999999999999999999999999999999999999998754211 1122234
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHH
Q 024298 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEY 199 (269)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~ 199 (269)
.+.+.++.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +++
T Consensus 86 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~rlvG~~~A~~ 165 (715)
T PRK11730 86 QWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPDARIGLPETKLGIMPGFGGTVRLPRLIGADNALE 165 (715)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEeCchhhcCCCCCchHHHHHHHhcCHHHHHH
Confidence 5556677788899999999999999999999999999999999999999999999999999999999999999995 899
Q ss_pred HhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhcc
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSS 240 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~ 240 (269)
++++|++++|+||+++||||+++|++++++++.+.+...+.
T Consensus 166 llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~ 206 (715)
T PRK11730 166 WIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIA 206 (715)
T ss_pred HHHcCCcCCHHHHHHCCCCeEecCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999988887766553
|
|
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=325.89 Aligned_cols=208 Identities=13% Similarity=0.094 Sum_probs=175.7
Q ss_pred cEEEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCCCC-ccccCChhH
Q 024298 42 QVLVEGRAKSRAAILNRPSNL-------------NALNTSMVGRLKRLYESWE-ENPDIGFVLMKGAGRA-FCSGGDVIA 106 (269)
Q Consensus 42 ~v~~~~~~~v~~I~ln~p~~~-------------Nal~~~~~~eL~~~l~~~~-~d~~v~~vVltg~g~~-F~~G~Dl~~ 106 (269)
.+.++++++|++||||||++. |+++.+|+.+|.++++.++ +|+++++|||||.|+. ||+|.|+..
T Consensus 259 ~v~~~~~~~va~itlnrP~~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~ 338 (546)
T TIGR03222 259 DVAIDRAARTATITLKGPKAAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALL 338 (546)
T ss_pred EEEEeccCCEEEEEecChhhcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccc
Confidence 355667899999999999999 9999999999999999998 4599999999999987 999999984
Q ss_pred HHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEE-chhcchhh-HHHHHhCCEEEE-------eCCceEecCcccc
Q 024298 107 LYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL-DGITMGCG-AGISLQGMYRVV-------TDKTVFSNPETQM 177 (269)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav-~G~a~GgG-~~Lal~cD~~ia-------~~~a~f~~pe~~~ 177 (269)
... .+...........+.++.+|..+|||+||+| ||+|+||| ++|+++||++|+ +++++|++||+++
T Consensus 339 ~~~----~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~~e~~l 414 (546)
T TIGR03222 339 EAH----KDHWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPEPAITLSELNF 414 (546)
T ss_pred ccc----ccchhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCCCEEeCCcccc
Confidence 211 1111112233344567889999999999999 89999999 999999999999 8999999999999
Q ss_pred cccCCCchHHHHHhhh-hH-HH--HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 178 GFHPDAGASFYLSHLP-GY-LG--EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 178 Gl~p~~g~~~~l~r~~-g~-~a--~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
|++|++|++++|++++ |. ++ ++++++|++|+|+||+++|||++++|++++++++.+.+...+..+..+.+..|...
T Consensus 415 Gl~p~~gg~~~L~~~v~G~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l 494 (546)
T TIGR03222 415 GLYPMVNGLSRLATRFYAEPAPVAAVRDKIGQALDAEEAERLGLVTAAPDDIDWEDEIRIALEERASFSPDALTGLEANL 494 (546)
T ss_pred ccCCCcCcHHHHHHHhcCchhHHHHHHHHhCCCCCHHHHHHcCCcccccCchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999998 87 46 66999999999999999999999999999999977776666655554555555443
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=324.26 Aligned_cols=208 Identities=17% Similarity=0.180 Sum_probs=175.1
Q ss_pred CCCCCccccCcEEEEEeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcC-CCCcc
Q 024298 32 DYSSNDYLQDQVLVEGRAKSRAAILNRPS----------NLNALNTSMVGRLKRLYESWE-ENPDIGFVLMKGA-GRAFC 99 (269)
Q Consensus 32 ~~~~~~~~~~~v~~~~~~~v~~I~ln~p~----------~~Nal~~~~~~eL~~~l~~~~-~d~~v~~vVltg~-g~~F~ 99 (269)
++++.|+.++++.++++++|++|+||||+ +.|++|.+|+.+|.++|+.++ .|+++|+|||||. |++||
T Consensus 2 ~~~~~~~~~~~v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~Fc 81 (546)
T TIGR03222 2 DFRTEPSQYRHWKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFC 81 (546)
T ss_pred CccCCCCCCceEEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCc
Confidence 35566778889999999999999999975 899999999999999999999 7899999999997 59999
Q ss_pred ccCChhHHHHhhccCChhhHHHHH-HHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC--ceEecCccc
Q 024298 100 SGGDVIALYQLLNEGKFEDFKNFF-ETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK--TVFSNPETQ 176 (269)
Q Consensus 100 ~G~Dl~~~~~~~~~~~~~~~~~~~-~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~ 176 (269)
+|.|++++........ ....... .....+.+.+..+||||||+|||+|+|||++|+++||+||++++ ++|++||++
T Consensus 82 aG~DL~~~~~~~~~~~-~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~ 160 (546)
T TIGR03222 82 SGANIFMLGLSTHAWK-VNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVP 160 (546)
T ss_pred CCcCHHHHhccccchh-hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchh
Confidence 9999998743211111 1111111 12234556778899999999999999999999999999999986 799999997
Q ss_pred -ccccCCCchHHHHH--hhhhH-HHHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhcc
Q 024298 177 -MGFHPDAGASFYLS--HLPGY-LGEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSS 240 (269)
Q Consensus 177 -~Gl~p~~g~~~~l~--r~~g~-~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~ 240 (269)
+|++|++|+..++. +.+|. +|++|+++|++++++||++|||||++||++++++++.+.+...+.
T Consensus 161 ~lGl~P~~gg~~~l~~~~~vg~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~ 228 (546)
T TIGR03222 161 LLGVLPGTGGLTRVTDKRRVRRDHADIFCTIEEGVRGKRAKEWRLVDEVVKPSQFDAAIAERAAELAA 228 (546)
T ss_pred ccCcCCccchhhhccccchhCHHHHHHHHHcCCCccHHHHHHcCCceEEeChHHHHHHHHHHHHHHHh
Confidence 99999999998887 68888 489999999999999999999999999999999987776655543
|
In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH. |
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-42 Score=326.38 Aligned_cols=211 Identities=16% Similarity=0.066 Sum_probs=174.8
Q ss_pred ccCcEEEE--EeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHhc-CCCceEEEEEcCC-CCcccc
Q 024298 39 LQDQVLVE--GRAKSRAAILNRPSNL-------------NALNTSMVGRLKRLYESWEE-NPDIGFVLMKGAG-RAFCSG 101 (269)
Q Consensus 39 ~~~~v~~~--~~~~v~~I~ln~p~~~-------------Nal~~~~~~eL~~~l~~~~~-d~~v~~vVltg~g-~~F~~G 101 (269)
.|+++.++ ++++|++||||||++. |++|.+|+.+|.++++.++. |+++|+|||||.| ++||+|
T Consensus 258 ~~~~~~v~~~~~~~va~itlnrP~~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG 337 (550)
T PRK08184 258 RYRHVDVEIDRAARTATITVKAPTAAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLA 337 (550)
T ss_pred eeEEEEEEEEccCCEEEEEEeCcccccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeC
Confidence 45555555 4689999999999987 68999999999999999986 7999999999999 599999
Q ss_pred CChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEc-hhcchhh-HHHHHhCCEEEEe-------CCceEec
Q 024298 102 GDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILD-GITMGCG-AGISLQGMYRVVT-------DKTVFSN 172 (269)
Q Consensus 102 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~-G~a~GgG-~~Lal~cD~~ia~-------~~a~f~~ 172 (269)
.|++... . .+..........+..++.++..+||||||+|| |+|+||| ++|+++||++|++ ++++|++
T Consensus 338 ~Dl~~~~-~---~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~a~f~~ 413 (550)
T PRK08184 338 ADATLLA-H---KDHWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPAPAITL 413 (550)
T ss_pred CChhhhc-c---cchHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCCCEEEC
Confidence 9987321 1 11111122334455678899999999999997 9999999 9999999999999 9999999
Q ss_pred CcccccccCCCchHHHHHhh-hhHH-HHHH--hccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHH
Q 024298 173 PETQMGFHPDAGASFYLSHL-PGYL-GEYL--ALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAA 248 (269)
Q Consensus 173 pe~~~Gl~p~~g~~~~l~r~-~g~~-a~~l--~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~ 248 (269)
||+++|++|++|++++|+++ +|.. ++++ +++|++++|+||+++||||+++|++++++++.+.+...+..+..+.+.
T Consensus 414 pe~~~Gl~p~~gg~~~L~r~~vG~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~ 493 (550)
T PRK08184 414 SALNFGLYPMVNGLSRLARRFYGEPDPLAAVRAKIGQPLDADAAEELGLVTAAPDDIDWEDEVRIALEERASLSPDALTG 493 (550)
T ss_pred ccccccCCCCCCcHHHhHHHhcChHHHHHHHHHHhCCcCCHHHHHHcCCcccccChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999988 6995 7775 599999999999999999999999999999777766665554444444
Q ss_pred HHHHh
Q 024298 249 YNCFL 253 (269)
Q Consensus 249 ~~~~~ 253 (269)
.|...
T Consensus 494 ~K~~l 498 (550)
T PRK08184 494 MEANL 498 (550)
T ss_pred HHHHH
Confidence 44333
|
|
| >cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=285.11 Aligned_cols=192 Identities=29% Similarity=0.476 Sum_probs=176.1
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHH
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (269)
+.+++++++++|+||+|++.|++|.+++++|.++++.++.|+++++|||+|.|+.||+|.|+.++....... +...++
T Consensus 1 i~~~~~~~i~~i~l~~~~~~N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~--~~~~~~ 78 (195)
T cd06558 1 VLVERDGGVATITLNRPEKRNALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAG--EEARAF 78 (195)
T ss_pred CEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccc--hhHHHH
Confidence 467888999999999999899999999999999999999999999999999999999999999987642211 135677
Q ss_pred HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHh
Q 024298 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLA 201 (269)
Q Consensus 123 ~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ 201 (269)
.+.++.++.++..+|||+||++||+|.|+|++++++||+||++++++|++||+++|++|+.|+++++++++|.. +.+++
T Consensus 79 ~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~~~~~~pe~~~G~~p~~g~~~~l~~~~g~~~a~~~~ 158 (195)
T cd06558 79 IRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAEDAKFGLPEVKLGLVPGGGGTQRLPRLVGPARARELL 158 (195)
T ss_pred HHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEechhhhcCCCCCCcHHHHHHHHhCHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999885 79999
Q ss_pred ccCCCCCHHHHHhcCccceeccCChHHHHHHHhhh
Q 024298 202 LTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSL 236 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~ 236 (269)
++|++++++||+++||||++++++++.+++.+.+.
T Consensus 159 l~g~~~~a~ea~~~Glv~~~~~~~~l~~~a~~~a~ 193 (195)
T cd06558 159 LTGRRISAEEALELGLVDEVVPDEELLAAALELAR 193 (195)
T ss_pred HcCCccCHHHHHHcCCCCeecChhHHHHHHHHHHh
Confidence 99999999999999999999999999888665543
|
This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=328.25 Aligned_cols=196 Identities=20% Similarity=0.302 Sum_probs=174.3
Q ss_pred ccCcEEEEE-eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCC
Q 024298 39 LQDQVLVEG-RAKSRAAILNRP-SNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGK 115 (269)
Q Consensus 39 ~~~~v~~~~-~~~v~~I~ln~p-~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~ 115 (269)
|-..+.+++ +++|++|+|||| ++.|++|.+++.+|.++++.++.|+++++|||+|.+ ++||+|+|+.++... ..
T Consensus 3 ~~~~~~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~---~~ 79 (708)
T PRK11154 3 MASAFTLNVREDNIAVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAAC---KT 79 (708)
T ss_pred CCceEEEEEcCCCEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhcc---CC
Confidence 444577888 789999999999 589999999999999999999999999999999875 899999999987532 11
Q ss_pred hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC--ceEecCcccccccCCCchHHHHHhhh
Q 024298 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK--TVFSNPETQMGFHPDAGASFYLSHLP 193 (269)
Q Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~~ 193 (269)
.+....+.+....++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|++|++++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl~p~~gg~~~L~r~v 159 (708)
T PRK11154 80 AQEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLI 159 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCCCCCccHHhHHHhhc
Confidence 2222334455667888999999999999999999999999999999999996 59999999999999999999999999
Q ss_pred hHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhh
Q 024298 194 GYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLC 237 (269)
Q Consensus 194 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~ 237 (269)
|.. |++|+++|++++|+||+++||||+++|++++++++.+.+..
T Consensus 160 G~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~A~~ 204 (708)
T PRK11154 160 GVSTALDMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKK 204 (708)
T ss_pred CHHHHHHHHHhCCcCCHHHHHHCCCCcEecChHHHHHHHHHHHHh
Confidence 995 89999999999999999999999999999999888887766
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=330.77 Aligned_cols=195 Identities=16% Similarity=0.233 Sum_probs=175.4
Q ss_pred cEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHH
Q 024298 42 QVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (269)
Q Consensus 42 ~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (269)
.+.++. +++|++|+||||++.|++|.+++.+|.+++++++.|+++++|||+|.|++||+|+|++++..... .......
T Consensus 7 ~i~~~~~~~gva~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~~ 85 (714)
T TIGR02437 7 TIQVTALEDGIAELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFA-LPDAELI 85 (714)
T ss_pred eEEEEEccCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhccc-CCHHHHH
Confidence 577774 78999999999999999999999999999999999999999999999999999999999854211 1122334
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHH
Q 024298 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEY 199 (269)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~ 199 (269)
.+.+..+.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. +++
T Consensus 86 ~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~a~fglPEv~lGl~Pg~Ggt~rL~rliG~~~A~~ 165 (714)
T TIGR02437 86 QWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKIGLPETKLGIMPGFGGTVRLPRVIGADNALE 165 (714)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEecchhhcCCCCCccHHHHHHHHhCHHHHHH
Confidence 4555667788999999999999999999999999999999999999999999999999999999999999999995 799
Q ss_pred HhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhh
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLC 237 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~ 237 (269)
|+++|++++|+||+++||||+++|++++++++.+.+..
T Consensus 166 llltG~~~~A~eA~~~GLvd~vv~~~~l~~~a~~~a~~ 203 (714)
T TIGR02437 166 WIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKD 203 (714)
T ss_pred HHHcCCcCCHHHHHHCCCCcEeeChhHHHHHHHHHHHH
Confidence 99999999999999999999999999999888776644
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=284.98 Aligned_cols=220 Identities=23% Similarity=0.298 Sum_probs=183.7
Q ss_pred CCccccCcEEEEE---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhh
Q 024298 35 SNDYLQDQVLVEG---RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLL 111 (269)
Q Consensus 35 ~~~~~~~~v~~~~---~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~ 111 (269)
.+...|+.+.+.+ ++.|..+.||||.|.|++|..|+.|+.++++.+..||++|+|||+|+|++||+|+|+..+....
T Consensus 13 ~~~~s~ksl~v~vk~~~~~V~hv~lnRPsk~Nal~~~~w~E~~~cf~~l~~dpdcr~iilsg~GKhFcaGIDl~~~~~~~ 92 (292)
T KOG1681|consen 13 SPDHSYKSLEVSVKSAQPFVYHVQLNRPSKLNALNKVFWREFKECFDSLDRDPDCRAIILSGAGKHFCAGIDLNDMASDR 92 (292)
T ss_pred CCccccceeeeeecCCCCeEEEEEecCcchhhhhhHHHHHHHHHHHHhhccCCCceEEEEecCCcceecccCcchhhhhh
Confidence 3334566666653 4569999999999999999999999999999999999999999999999999999987765432
Q ss_pred cc---C-----ChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCC
Q 024298 112 NE---G-----KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDA 183 (269)
Q Consensus 112 ~~---~-----~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~ 183 (269)
.. . .....++....+++-+..|.+||||+|++|||+|+|+|+.|..+||+|+|++++.|+.-|+.+|+..+.
T Consensus 93 ~~~~~~dd~aR~g~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqDAffsvkEVDvglaADv 172 (292)
T KOG1681|consen 93 ILQPEGDDVARKGRSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQDAFFSVKEVDVGLAADV 172 (292)
T ss_pred ccccccchHhhhhHHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeecccceeeeeeeeeehhhch
Confidence 11 1 123455666778888999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHhhhhHH--HHHHhccCCCCCHHHHHhcCccceeccCChH-HHHHHH-hhhhhccccccHHHHHHHHhc
Q 024298 184 GASFYLSHLPGYL--GEYLALTGEKLNGVEMIACGLATHYTLNGVR-YTALYF-TSLCVSSLCYSSYAAYNCFLS 254 (269)
Q Consensus 184 g~~~~l~r~~g~~--a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l-~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 254 (269)
|...+|+..+|.. ++++.+|++.|+|.||++.|||.+|+|+.+. ++.+.- +.+.+.+.|-.+...+..+..
T Consensus 173 GTL~RlpkvVGn~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KSpvaVqgTK~~L~y 247 (292)
T KOG1681|consen 173 GTLNRLPKVVGNQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKSPVAVQGTKENLLY 247 (292)
T ss_pred hhHhhhhHHhcchHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCCceeeechHHHHHH
Confidence 9999999999964 6999999999999999999999999998554 455333 444445556655555555543
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=327.78 Aligned_cols=183 Identities=21% Similarity=0.322 Sum_probs=165.1
Q ss_pred ccCcEEEEEeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEE-EEEcCCCCccccCChhHHHHhhccCCh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFV-LMKGAGRAFCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~v-Vltg~g~~F~~G~Dl~~~~~~~~~~~~ 116 (269)
.++.+.++++|+|++|+||||+ +.|++|.+++.+|.+++++++.|+++++| |++|.|++||+|+|++++... ...
T Consensus 11 ~~~~~~~~~~~gVa~itlnrP~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~---~~~ 87 (737)
T TIGR02441 11 ARTHRHYEVKGDVAVVKIDSPNSKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAAC---KTA 87 (737)
T ss_pred CCCeEEEEEECCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhcc---CCh
Confidence 3456899999999999999998 58999999999999999999999999965 579999999999999998531 122
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC--ceEecCcccccccCCCchHHHHHhhhh
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK--TVFSNPETQMGFHPDAGASFYLSHLPG 194 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~~g 194 (269)
+....+....+.++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|+|++|
T Consensus 88 ~~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 88 QEVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGLLPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCCCCCccHhhhHHHhhC
Confidence 334455566778889999999999999999999999999999999999987 589999999999999999999999999
Q ss_pred HH-HHHHhccCCCCCHHHHHhcCccceeccC
Q 024298 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 195 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~ 224 (269)
.. |++|+++|++++|+||+++||||+|+|+
T Consensus 168 ~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 168 VPAALDMMLTGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCC
Confidence 95 8999999999999999999999999997
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=324.90 Aligned_cols=188 Identities=20% Similarity=0.299 Sum_probs=169.0
Q ss_pred EEeCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE-EcCCCCccccCChhHHHHhhccCChhhHHHHH
Q 024298 46 EGRAKSRAAILNRP-SNLNALNTSMVGRLKRLYESWEENPDIGFVLM-KGAGRAFCSGGDVIALYQLLNEGKFEDFKNFF 123 (269)
Q Consensus 46 ~~~~~v~~I~ln~p-~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVl-tg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 123 (269)
+.+++|++|+|||| ++.|++|.+|+.+|.++|+.++.|+++++||| +|.|++||+|+|++++... ........+.
T Consensus 6 ~~~~~Va~itlnrp~~~~Nal~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~---~~~~~~~~~~ 82 (699)
T TIGR02440 6 VREDGIAILTIDVPGEKMNTLKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAAC---QTAGEAKALA 82 (699)
T ss_pred EcCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhcc---CChhHHHHHH
Confidence 45789999999999 68999999999999999999999999999986 6788999999999987532 1122233445
Q ss_pred HHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC--ceEecCcccccccCCCchHHHHHhhhhHH-HHHH
Q 024298 124 ETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK--TVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYL 200 (269)
Q Consensus 124 ~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l 200 (269)
+..+.++..+.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|.. +++|
T Consensus 83 ~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl~p~~g~~~~L~r~vG~~~A~~l 162 (699)
T TIGR02440 83 QQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALDM 162 (699)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccCCCCccHHHHHHHhcCHHHHHHH
Confidence 56677888999999999999999999999999999999999985 79999999999999999999999999995 7999
Q ss_pred hccCCCCCHHHHHhcCccceeccCChHHHHHHHhhh
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSL 236 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~ 236 (269)
+++|++++++||+++||||+++|++++++++.+.+.
T Consensus 163 lltG~~~~a~eA~~~GLV~~vv~~~~l~~~a~~~A~ 198 (699)
T TIGR02440 163 ILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMAL 198 (699)
T ss_pred HHcCCcCCHHHHHhCCCCcEecChhHHHHHHHHHHH
Confidence 999999999999999999999999999998888775
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=312.60 Aligned_cols=204 Identities=16% Similarity=0.152 Sum_probs=170.6
Q ss_pred ccccCcEEEEEeCCEEEEEEcCC-------C---CCCCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCC-CCccccCCh
Q 024298 37 DYLQDQVLVEGRAKSRAAILNRP-------S---NLNALNTSMVGRLKRLYESWE-ENPDIGFVLMKGAG-RAFCSGGDV 104 (269)
Q Consensus 37 ~~~~~~v~~~~~~~v~~I~ln~p-------~---~~Nal~~~~~~eL~~~l~~~~-~d~~v~~vVltg~g-~~F~~G~Dl 104 (269)
+..++.+.++++++|++|+|||| + +.|++|.+|+.+|.+++++++ .|+++++|||||.+ ++||+|.|+
T Consensus 11 ~~~~~~~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL 90 (550)
T PRK08184 11 PSQYRHWKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANI 90 (550)
T ss_pred CCCCceEEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCH
Confidence 34678899999999999999965 3 899999999999999999998 78999999999985 899999999
Q ss_pred hHHHHhhccCChhhHHHHHH-HHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC--ceEecCccc-cccc
Q 024298 105 IALYQLLNEGKFEDFKNFFE-TLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK--TVFSNPETQ-MGFH 180 (269)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~pe~~-~Gl~ 180 (269)
+++....... ........+ ....+...+.++||||||+|||+|+|||++|+++|||||++++ ++|++||++ +|++
T Consensus 91 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl~ 169 (550)
T PRK08184 91 FMLGGSSHAW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGVL 169 (550)
T ss_pred HhHhccccch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccccC
Confidence 9875321111 011111111 1223455678899999999999999999999999999999987 899999997 9999
Q ss_pred CCCchHHHHH--hhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccc
Q 024298 181 PDAGASFYLS--HLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSL 241 (269)
Q Consensus 181 p~~g~~~~l~--r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~ 241 (269)
|++|+.+++. +++|.. +++++++|++++++||+++||||++||++++++++.+.+...+..
T Consensus 170 P~~gg~~rl~~~~~vg~~~A~~llltG~~i~AeeA~~~GLVd~vv~~d~l~~~a~~~A~~ia~~ 233 (550)
T PRK08184 170 PGTGGLTRVTDKRKVRRDLADIFCTIEEGVRGKRAVDWRLVDEVVKPSKFDAKVAERAAELAAA 233 (550)
T ss_pred CCcchHHHhhhhhhcCHHHHHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhC
Confidence 9999999998 678884 799999999999999999999999999999999877766655443
|
|
| >KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=273.29 Aligned_cols=190 Identities=23% Similarity=0.357 Sum_probs=175.3
Q ss_pred cCcEEEEE----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccC
Q 024298 40 QDQVLVEG----RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEG 114 (269)
Q Consensus 40 ~~~v~~~~----~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~ 114 (269)
-.++.+++ +.+|.+|-+|||.+.|+++..|+++|.++|+.+..|+.+|+|+|++.- ..||+|+|+++-..+
T Consensus 26 ~~Ev~v~~L~g~~~GItvl~mNRpa~kNsl~r~~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~M---- 101 (291)
T KOG1679|consen 26 ANEVFVRRLTGKDEGITILNMNRPAKKNSLGRVFVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTM---- 101 (291)
T ss_pred CceeeeeeccCCCCCeEEEecCChhhhccHHHHHHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcC----
Confidence 34466664 557999999999999999999999999999999999999999999986 889999999997764
Q ss_pred ChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhh
Q 024298 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194 (269)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g 194 (269)
+..+...+++.++.++..|..+|.||||+|+|.++|||++|+++||+|+|+++++|+++|.+++++|++||+++|+|++|
T Consensus 102 s~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~akmGLvET~laiiPGaGGtQRLpR~vg 181 (291)
T KOG1679|consen 102 SPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASSAKMGLVETKLAIIPGAGGTQRLPRIVG 181 (291)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhhccccccccceeeecCCCccchhHHHHh
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHH
Q 024298 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYF 233 (269)
Q Consensus 195 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~ 233 (269)
.. ++|+++|++.+++.||...||||++|..++--+++++
T Consensus 182 ~alaKELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~ 221 (291)
T KOG1679|consen 182 VALAKELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQ 221 (291)
T ss_pred HHHHHhHhhhheeccchhHHhcchHHHHHhcCccccHHHH
Confidence 96 8999999999999999999999999998865555554
|
|
| >KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=276.43 Aligned_cols=216 Identities=24% Similarity=0.326 Sum_probs=191.9
Q ss_pred ccCcEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEGRAKSRAAILN-RPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln-~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
.+..+.++++|++.+|.+| ||++.|+++.++..++..+|+.+.+|+++..+|++|.|++||+|.|+..+....+....+
T Consensus 5 ~~~~~vv~~~~g~~~I~~~~~Pkk~Nal~~e~y~~i~~al~~a~~dds~~~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~ 84 (266)
T KOG0016|consen 5 RYREIVVTRENGPFFIALNIRPKKKNALNREDYVYIQRALEEANDDDSVSITVLSSNGSYFCSGLDFSPFAKALDDDANE 84 (266)
T ss_pred cccceEEEecCCcEEEEecCCCcccccccHHHHHHHHHHHHHhhcccceEEEEEecCccEEeeccccchhhhcCCCcccc
Confidence 5778999999999999999 999999999999999999999999999999999999999999999999988765443333
Q ss_pred h---HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhh
Q 024298 118 D---FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194 (269)
Q Consensus 118 ~---~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g 194 (269)
. ..++...+..+...+..+|||+||+|||+|+|.|+.+...||+++|+|+++|-.|++++|..|++|+++.+++++|
T Consensus 85 ~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dka~F~TPfa~lGq~PEG~Ss~t~p~imG 164 (266)
T KOG0016|consen 85 ESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDKAWFQTPFAKLGQSPEGCSSVTLPKIMG 164 (266)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccceEEeccchhcCCCCCcceeeeehHhhc
Confidence 2 2333444556888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHhcCCccchHHHHHHhh
Q 024298 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFLSLPDRDFHWLRNELE 268 (269)
Q Consensus 195 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~ 268 (269)
.. |.||++.|++++|+||++.|||+++++.+.+.+. +...+++++.+++..++..|+.++
T Consensus 165 ~~~A~E~ll~~~kltA~Ea~~~glVskif~~~tf~~~--------------v~~~ikq~s~l~p~sl~~~K~L~r 225 (266)
T KOG0016|consen 165 SASANEMLLFGEKLTAQEACEKGLVSKIFPAETFNEE--------------VLKKIKQYSKLSPESLLGMKKLLR 225 (266)
T ss_pred hhhHHHHHHhCCcccHHHHHhcCchhhhcChHHHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 95 8999999999999999999999999999999999 666666666666666666666553
|
|
| >COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=260.02 Aligned_cols=215 Identities=18% Similarity=0.235 Sum_probs=180.3
Q ss_pred ccCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--C-CCccccCChhHHHHhhccC
Q 024298 39 LQDQVLVEGR-AKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGA--G-RAFCSGGDVIALYQLLNEG 114 (269)
Q Consensus 39 ~~~~v~~~~~-~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~--g-~~F~~G~Dl~~~~~~~~~~ 114 (269)
.|+.|.+++. ++++.|+||||+++|++.+..+.||.++|..+..|++|.+|+|||. | +.||+|.|-+.-.....=.
T Consensus 16 ~y~dI~Y~~~~~giakItinRPevrNAfrP~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~ 95 (282)
T COG0447 16 GYEDITYEKSVDGIAKITINRPEVRNAFRPKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYV 95 (282)
T ss_pred CcceeEEeeccCceEEEEecChhhhccCCCccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCcc
Confidence 5888999998 9999999999999999999999999999999999999999999986 5 7999999986543210000
Q ss_pred ChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhh
Q 024298 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194 (269)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g 194 (269)
+.+.... -.+.++.+.|+.+||||||.|+|+++|||-.|-+.||+.||++++.|+....++|-+-++-|+-+|.|++|
T Consensus 96 ~d~~~~r--LnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~nA~FgQTgp~VGSFD~G~Gs~ylar~VG 173 (282)
T COG0447 96 DDDGIPR--LNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADNAIFGQTGPKVGSFDGGYGSSYLARIVG 173 (282)
T ss_pred CCccCcc--cchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhcchhcCCCCCcccccCcccHHHHHHHhh
Confidence 1111111 13445777899999999999999999999999999999999999999999999999988888888999999
Q ss_pred HH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHh-hhhhccccccHHHHHHHHhcC
Q 024298 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFT-SLCVSSLCYSSYAAYNCFLSL 255 (269)
Q Consensus 195 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 255 (269)
+. |+|+-+.++.++|+||+++|+||.|||-++|+++..++ .+...+.|.+.+.++..|..-
T Consensus 174 qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~~~LE~e~v~W~~E~l~kSP~AlR~LK~Afnad 236 (282)
T COG0447 174 QKKAREIWFLCRQYDAEEALDMGLVNTVVPHADLEKETVQWAREMLAKSPTALRMLKAAFNAD 236 (282)
T ss_pred hhhhHHhhhhhhhccHHHHHhcCceeeeccHHHHHHHHHHHHHHHHhcChHHHHHHHHHhcCC
Confidence 95 89999999999999999999999999999999886664 445566666555555555443
|
|
| >KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=265.55 Aligned_cols=226 Identities=44% Similarity=0.761 Sum_probs=202.9
Q ss_pred CcchhHHHhhhccceEeeceecCccccccCCCCCCCccccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH
Q 024298 1 MQRIKSLLRIKHSFKQVAFVSHQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESW 80 (269)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~ 80 (269)
|+|.+.+-+..+.++..+. .+.|.+...+ ...+....+.|.++.++....||||||+.+|++|.+|+..+.-.|..+
T Consensus 1 m~~~~~~~~~~s~~~~~~~--~~~r~f~~~~-~~~~~~~~~~VL~e~~~~~r~itLNRPKaLNAlnleMv~~~~~~L~~w 77 (401)
T KOG1684|consen 1 MLRQKLLKARVSNFLALKR--TTSRAFIRMA-SSVSTDSKDQVLVEGKGCARVITLNRPKALNALNLEMVLSIYPKLVEW 77 (401)
T ss_pred Ccchhhhhhhhcchhhhhh--hhccceeecc-cccccccCCceEEecCCceeEEEecCchhhccccHHHHHHHHHHHHhh
Confidence 6777777777777776554 5566655544 222333567799999999999999999999999999999999999999
Q ss_pred hcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhC
Q 024298 81 EENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQG 159 (269)
Q Consensus 81 ~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~c 159 (269)
+.++.+++||+.|.| ++||+|+|+........++.......++...+.+...|.++.||.||.++|-.+|||+.|+...
T Consensus 78 e~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg 157 (401)
T KOG1684|consen 78 EKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHG 157 (401)
T ss_pred ccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecc
Confidence 999999999999995 9999999999877766667777789999999999999999999999999999999999999999
Q ss_pred CEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCHHHHHhcCccceeccCChHHH
Q 024298 160 MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGVRYT 229 (269)
Q Consensus 160 D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~ 229 (269)
-||||+|++.|.+||..+|++|+.|++++++|++|..+.++.|||.++++.||+..||.++.||.+++..
T Consensus 158 ~fRVATerT~~AmPEt~IGlfPDVG~Sy~lsrlpg~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~ 227 (401)
T KOG1684|consen 158 RFRVATERTVFAMPETGIGLFPDVGASYFLSRLPGYLGLYLGLTGQRLSGADALRCGLATHYVPSEKLPS 227 (401)
T ss_pred eeEEeeccceecccccccccccCccceeehhhCccHHHHhhhhccceecchHHHHhcchhhccchhhhhH
Confidence 9999999999999999999999999999999999988999999999999999999999999999999874
|
|
| >KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=241.51 Aligned_cols=213 Identities=19% Similarity=0.239 Sum_probs=188.4
Q ss_pred ccccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCCh
Q 024298 37 DYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 37 ~~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~ 116 (269)
........++.+++|..|++|+|++.|.++.+|+.+|.+.+....++.++|+|||+..|+.||+|.|++++.+ ++..
T Consensus 28 ~~p~~~g~~~~~~gvR~i~l~npKk~NtLSLaM~~~Lq~~ll~d~d~~dlr~viita~GkifSaGH~LKELt~---e~g~ 104 (287)
T KOG1682|consen 28 NGPSDLGLVKEHNGVREITLNNPKKLNTLSLAMMCALQDALLKDKDNLDLRCVIITAQGKIFSAGHNLKELTN---EPGS 104 (287)
T ss_pred cCcccccccccccceeeeeecCccccchhhHHHHHHHHHHHhhcccccceeEEEEecCCccccccccHHHhhc---Cccc
Confidence 3345556677789999999999999999999999999999999888889999999999999999999999876 3445
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL 196 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~ 196 (269)
+...+.++...+++.-|+++|+|+|+-|||+|..+|+.|...||++||+++++|+.|..++|++....|.. +.|.+.+.
T Consensus 105 d~haevFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~SkF~tPG~~vGlFCSTPGvA-laRavpRk 183 (287)
T KOG1682|consen 105 DIHAEVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKNSKFSTPGAGVGLFCSTPGVA-LARAVPRK 183 (287)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecCccccCCCCceeeEecCcchh-Hhhhcchh
Confidence 56677888889999999999999999999999999999999999999999999999999999987666655 67777774
Q ss_pred -HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 -GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+.+|++||++|+++||+..|||+++||+++++.++++-+.......+++-++-+.|.
T Consensus 184 va~~ML~Tg~Pi~~eeAl~sGlvskvVp~~el~~e~~~i~~~i~~~srav~slgk~f~ 241 (287)
T KOG1682|consen 184 VAAYMLMTGLPITGEEALISGLVSKVVPAEELDKEIEEITNAIKAKSRAVISLGKEFY 241 (287)
T ss_pred HHHHHHHhCCCCchHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 899999999999999999999999999999999888877777666666766666554
|
|
| >cd07014 S49_SppA Signal peptide peptidase A | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-21 Score=158.44 Aligned_cols=143 Identities=16% Similarity=0.016 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchh
Q 024298 68 SMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGI 147 (269)
Q Consensus 68 ~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~ 147 (269)
-.+.+|.++++.+++|+++++|||++ +|.|.|+... ..+.+++..+..++|||||++||.
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~~vvl~~----~~~gg~~~~~----------------~~~~~~i~~~~~~~kpVia~v~G~ 81 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVKAIVLRV----NSPGGSVTAS----------------EVIRAELAAARAAGKPVVASGGGN 81 (177)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEe----eCCCcCHHHH----------------HHHHHHHHHHHhCCCCEEEEECCc
Confidence 35789999999999999999999997 6888887642 123446667778999999999999
Q ss_pred cchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHH--------HHHhhhh--HH-HHHHhccCCCCCHHHHHhcC
Q 024298 148 TMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASF--------YLSHLPG--YL-GEYLALTGEKLNGVEMIACG 216 (269)
Q Consensus 148 a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~--------~l~r~~g--~~-a~~l~ltG~~i~a~eA~~~G 216 (269)
|.|+|+.|+++||+++++++++|+++.+..+..+...... .+++..| .. .++++..|..++|+||++.|
T Consensus 82 a~g~g~~la~a~D~i~a~~~a~~~~~G~~~~~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~G 161 (177)
T cd07014 82 AASGGYWISTPANYIVANPSTLVGSIGIFGVQLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANG 161 (177)
T ss_pred hhHHHHHHHHhCCEEEECCCCeEEEechHhhHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcC
Confidence 9999999999999999999999999987766433221122 3344445 43 47888999999999999999
Q ss_pred ccceeccCChHHHH
Q 024298 217 LATHYTLNGVRYTA 230 (269)
Q Consensus 217 Lv~~vv~~~~l~~~ 230 (269)
|||++.+.+++.++
T Consensus 162 LVD~v~~~~e~~~~ 175 (177)
T cd07014 162 LVDSLGSFDDAVAK 175 (177)
T ss_pred CcccCCCHHHHHHH
Confidence 99999998887754
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p |
| >cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-20 Score=154.39 Aligned_cols=150 Identities=15% Similarity=0.053 Sum_probs=117.3
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHH
Q 024298 52 RAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVY 131 (269)
Q Consensus 52 ~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 131 (269)
++|.++ ..++......+.+.|+.+++++ ++.|+|.=. |.|.++..- ..++.
T Consensus 2 ~vv~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~vvl~In----SpGG~v~~~-------------------~~i~~ 52 (187)
T cd07020 2 YVLEIN-----GAITPATADYLERAIDQAEEGG-ADALIIELD----TPGGLLDST-------------------REIVQ 52 (187)
T ss_pred EEEEEe-----eEEChHHHHHHHHHHHHHHhCC-CCEEEEEEE----CCCCCHHHH-------------------HHHHH
Confidence 456665 3467778889999999998665 677777622 555555431 12444
Q ss_pred HHccCCCcEEEEEc---hhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCC--------------chHHHHHhhhh
Q 024298 132 LQGTFVKPHVAILD---GITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDA--------------GASFYLSHLPG 194 (269)
Q Consensus 132 ~i~~~~kp~Iaav~---G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~--------------g~~~~l~r~~g 194 (269)
.+..+|||||++|+ |+|.|+|+.++++||+++++++++|+.+++..+..+.. +....+.+..|
T Consensus 53 ~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G 132 (187)
T cd07020 53 AILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRG 132 (187)
T ss_pred HHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56689999999999 99999999999999999999999999999985554432 23446778888
Q ss_pred H---HHHHHhccCCCCCHHHHHhcCccceeccCC-hHHHH
Q 024298 195 Y---LGEYLALTGEKLNGVEMIACGLATHYTLNG-VRYTA 230 (269)
Q Consensus 195 ~---~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~-~l~~~ 230 (269)
. .+++++++|+.++++||+++||||+++++. ++++.
T Consensus 133 ~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 133 RNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK 172 (187)
T ss_pred CCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence 6 368999999999999999999999999987 56644
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c |
| >cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=136.81 Aligned_cols=144 Identities=16% Similarity=0.084 Sum_probs=105.2
Q ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEc
Q 024298 66 NTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILD 145 (269)
Q Consensus 66 ~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~ 145 (269)
+.-.+.+|.++|+.+..|+++++|||+ .||.|.|+..+. .+.+.+..+..++||+||+++
T Consensus 19 ~~~~~~~l~~~l~~a~~d~~v~~ivL~----~~s~Gg~~~~~~----------------~~~~~l~~~~~~~kpVia~v~ 78 (211)
T cd07019 19 GNVGGDTTAAQIRDARLDPKVKAIVLR----VNSPGGSVTASE----------------VIRAELAAARAAGKPVVVSAG 78 (211)
T ss_pred CccCHHHHHHHHHHHhhCCCceEEEEE----EcCCCcCHHHHH----------------HHHHHHHHHHhCCCCEEEEEC
Confidence 445689999999999999999999998 799999997642 223345677889999999999
Q ss_pred hhcchhhHHHHHhCCEEEEeCCceEecCc------------ccccccC---CCchH--------------HHHHhh----
Q 024298 146 GITMGCGAGISLQGMYRVVTDKTVFSNPE------------TQMGFHP---DAGAS--------------FYLSHL---- 192 (269)
Q Consensus 146 G~a~GgG~~Lal~cD~~ia~~~a~f~~pe------------~~~Gl~p---~~g~~--------------~~l~r~---- 192 (269)
|.|.|+|+.|+++||++++++++.|+... -++|+-+ -.++. ..+...
T Consensus 79 g~a~s~gy~la~~aD~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~ 158 (211)
T cd07019 79 GAAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENG 158 (211)
T ss_pred CeehhHHHHHHHhCCEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998886432 1233311 11010 011111
Q ss_pred -------------hhHHHHHHhccCCCCCHHHHHhcCccceeccCChHHH
Q 024298 193 -------------PGYLGEYLALTGEKLNGVEMIACGLATHYTLNGVRYT 229 (269)
Q Consensus 193 -------------~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~ 229 (269)
+.....+-+..|..++++||++.||||++..-++..+
T Consensus 159 ~~~f~~~Va~~R~~~~~~l~~~~~~~~~~~~~A~~~GLvD~i~~~~~~~~ 208 (211)
T cd07019 159 YKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA 208 (211)
T ss_pred HHHHHHHHHhhCCCCHHHHHHhcCCcEEeHHHHHHcCCcccCCCHHHHHH
Confidence 1111222345689999999999999999987666554
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te |
| >cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-14 Score=122.78 Aligned_cols=150 Identities=20% Similarity=0.162 Sum_probs=103.3
Q ss_pred cCCCCCCC-CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHcc
Q 024298 57 NRPSNLNA-LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGT 135 (269)
Q Consensus 57 n~p~~~Na-l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 135 (269)
+++...|+ ++..++.+|.++|+.+++|+++++|||+. +|.|.++... +.+...+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~----~s~gg~~~~~----------------~~l~~~l~~~~~ 72 (214)
T cd07022 13 PRGSWLEASSGLTSYEGIAAAIRAALADPDVRAIVLDI----DSPGGEVAGV----------------FELADAIRAARA 72 (214)
T ss_pred CCCCcccCCCCcccHHHHHHHHHHHhhCCCCcEEEEEE----eCCCCcHHHH----------------HHHHHHHHHHhc
Confidence 34444454 45689999999999999999999999975 5666665432 123334444445
Q ss_pred CCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCccc------------ccccCCC---------c-----hH---
Q 024298 136 FVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ------------MGFHPDA---------G-----AS--- 186 (269)
Q Consensus 136 ~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~------------~Gl~p~~---------g-----~~--- 186 (269)
+|||||+++|.|.|+|+.|+++||++++++++.|+...+. +|+-+.. + .+
T Consensus 73 -~KpViA~v~g~a~s~gy~lA~~aD~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~ 151 (214)
T cd07022 73 -GKPIVAFVNGLAASAAYWIASAADRIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEA 151 (214)
T ss_pred -CCCEEEEECCchhhHHHHHHhcCCEEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHH
Confidence 7999999999999999999999999999999988654332 2331110 0 00
Q ss_pred -HHHHhh-----------------hhHHH-HHHhccCCCCCHHHHHhcCccceeccCChHHH
Q 024298 187 -FYLSHL-----------------PGYLG-EYLALTGEKLNGVEMIACGLATHYTLNGVRYT 229 (269)
Q Consensus 187 -~~l~r~-----------------~g~~a-~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~ 229 (269)
..+..+ ..... .+++ |..+++++|++.||||++...+++.+
T Consensus 152 re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~~~~~~ 211 (214)
T cd07022 152 RARLQAEVDALYAMFVAAVARNRGLSAAAVRATE--GGVFRGQEAVAAGLADAVGTLDDALA 211 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhh--cCeeeHHHHHHcCCCcccCCHHHHHH
Confidence 001111 11111 3333 99999999999999999987766654
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. |
| >cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=118.19 Aligned_cols=134 Identities=16% Similarity=0.104 Sum_probs=102.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEE
Q 024298 65 LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (269)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav 144 (269)
++..+..+|.+.|+.++.|+.+++|+|.. .|.|.|+... ..+...+..++||||+.+
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~~ivl~~----~s~Gg~~~~~-------------------~~i~~~l~~~~kpvva~~ 64 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVKAIVLEV----NTPGGRVDAG-------------------MNIVDALQASRKPVIAYV 64 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCceEEEEE----ECCCcCHHHH-------------------HHHHHHHHHhCCCEEEEE
Confidence 56688999999999999999999999986 4777766432 223445666789999999
Q ss_pred chhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchH------HHH----Hh---hh------hHH-HHHHhccC
Q 024298 145 DGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGAS------FYL----SH---LP------GYL-GEYLALTG 204 (269)
Q Consensus 145 ~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~------~~l----~r---~~------g~~-a~~l~ltG 204 (269)
+|.|.++|+.|+++||.+++.+++.|++.....+.....+-. ..+ .+ .+ ... ..+++..|
T Consensus 65 ~g~~~s~g~~la~~~d~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~ 144 (161)
T cd00394 65 GGQAASAGYYIATAANKIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKD 144 (161)
T ss_pred CChhHHHHHHHHhCCCEEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCC
Confidence 999999999999999999999999999988875553322000 011 11 11 111 35667789
Q ss_pred CCCCHHHHHhcCcccee
Q 024298 205 EKLNGVEMIACGLATHY 221 (269)
Q Consensus 205 ~~i~a~eA~~~GLv~~v 221 (269)
..++++||+++||||+|
T Consensus 145 ~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 145 LVLTAQEALEYGLVDAL 161 (161)
T ss_pred cEEcHHHHHHcCCcCcC
Confidence 99999999999999985
|
Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec |
| >cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-14 Score=121.51 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=109.5
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (269)
|++|.++-+=... ...+..+|.++|+.++.|+++++|+|++ +|.|.|+... ..+.+.+
T Consensus 2 v~vi~i~g~i~~~--~~~~~~~l~~~l~~a~~d~~i~~ivl~~----~s~Gg~~~~~----------------~~i~~~i 59 (208)
T cd07023 2 IAVIDIEGTISDG--GGIGADSLIEQLRKAREDDSVKAVVLRI----NSPGGSVVAS----------------EEIYREI 59 (208)
T ss_pred EEEEEEEEEEcCC--CCCCHHHHHHHHHHHHhCCCCcEEEEEE----ECCCCCHHHH----------------HHHHHHH
Confidence 4566665321000 3678999999999999999999999998 4788888642 1233456
Q ss_pred HHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcc------------cccccCCC---------ch----
Q 024298 131 YLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET------------QMGFHPDA---------GA---- 185 (269)
Q Consensus 131 ~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~------------~~Gl~p~~---------g~---- 185 (269)
..+..++|||||+++|.|.|+|+.|+++||++++++++.|+...+ ++|+-+.. +-
T Consensus 60 ~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~ 139 (208)
T cd07023 60 RRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRP 139 (208)
T ss_pred HHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCC
Confidence 677788999999999999999999999999999999998864322 23332211 00
Q ss_pred -----HHHHHhhh---------------h--HHHHHHhccCCCCCHHHHHhcCccceeccCChHHH
Q 024298 186 -----SFYLSHLP---------------G--YLGEYLALTGEKLNGVEMIACGLATHYTLNGVRYT 229 (269)
Q Consensus 186 -----~~~l~r~~---------------g--~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~ 229 (269)
...+..++ | .....-++.|..+++++|++.||||++...++..+
T Consensus 140 ~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~a~~A~~~gLiD~i~~~~~~~~ 205 (208)
T cd07023 140 LTEEERAILQALVDDIYDQFVDVVAEGRGMSGERLDKLADGRVWTGRQALELGLVDELGGLDDAIA 205 (208)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCcEEEHHHHHHcCCCcccCCHHHHHH
Confidence 00111111 1 11123356789999999999999999987555543
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad |
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-14 Score=138.13 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=114.9
Q ss_pred EeCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHH
Q 024298 47 GRAKSRAAILNRPS--NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFE 124 (269)
Q Consensus 47 ~~~~v~~I~ln~p~--~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 124 (269)
.++.|++|.++.+= ..|..+....+.+.+.|+.+..|++|++|||+-. |.|++.... +
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrin----SpGGs~~as----------------e 365 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRIN----SPGGSVFAS----------------E 365 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEec----CCCCCHHHH----------------H
Confidence 46789999998652 1233333345678888999999999999999975 333332210 1
Q ss_pred HHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceE------ecCc------ccccccCCCchHHHHHh-
Q 024298 125 TLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVF------SNPE------TQMGFHPDAGASFYLSH- 191 (269)
Q Consensus 125 ~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f------~~pe------~~~Gl~p~~g~~~~l~r- 191 (269)
.+.+.+..+...+||||+.++|.|.+||+.++++||.++|.+.+.+ +.+. .++|+.|....+..+..
T Consensus 366 ~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~ 445 (584)
T TIGR00705 366 IIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANV 445 (584)
T ss_pred HHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCC
Confidence 2223444566778999999999999999999999999999998876 5553 57888876554443322
Q ss_pred ---------------------------hhhH------HHHHHhccCCCCCHHHHHhcCccceeccC
Q 024298 192 ---------------------------LPGY------LGEYLALTGEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 192 ---------------------------~~g~------~a~~l~ltG~~i~a~eA~~~GLv~~vv~~ 224 (269)
.++. .+.+.+..|+.++++||+++||||++..-
T Consensus 446 s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~~ 511 (584)
T TIGR00705 446 SLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGGL 511 (584)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCCH
Confidence 2222 24677889999999999999999999543
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.5e-14 Score=113.99 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchh
Q 024298 68 SMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGI 147 (269)
Q Consensus 68 ~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~ 147 (269)
....++.+.|+.++.++.+ .+.|.+. |+++.. ...+...+..+|||||+.++|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i-~l~insp------GG~~~~-------------------~~~i~~~i~~~~~pvi~~v~g~ 68 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI-TVRINSP------GGDVFA-------------------GLAIYNALKRHKGKVTVKIDGL 68 (160)
T ss_pred cCHHHHHHHHHhccCCCCE-EEEEECC------CCCHHH-------------------HHHHHHHHHhcCCCEEEEEcch
Confidence 5677888888888876443 4455544 444322 1235556677899999999999
Q ss_pred cchhhHHHHHhCCEEEEeCCceEecCcccccccCCCch---------------HHHHHhhhhH--H-HHHHhccCCCCCH
Q 024298 148 TMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGA---------------SFYLSHLPGY--L-GEYLALTGEKLNG 209 (269)
Q Consensus 148 a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~---------------~~~l~r~~g~--~-a~~l~ltG~~i~a 209 (269)
|.|+|+.++++||+|+++++++|.+.....|..+.... ...+.+..|. . ..+++..+..+++
T Consensus 69 a~s~g~~ia~a~d~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a 148 (160)
T cd07016 69 AASAASVIAMAGDEVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTA 148 (160)
T ss_pred HHhHHHHHHhcCCeEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcH
Confidence 99999999999999999999999997776555443221 2235666773 3 4777777778999
Q ss_pred HHHHhcCcccee
Q 024298 210 VEMIACGLATHY 221 (269)
Q Consensus 210 ~eA~~~GLv~~v 221 (269)
+||+++||||+|
T Consensus 149 ~eA~~~GliD~v 160 (160)
T cd07016 149 QEAVELGFADEI 160 (160)
T ss_pred HHHHHcCCCCcC
Confidence 999999999986
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a |
| >TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.1e-13 Score=112.72 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=104.0
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (269)
|++|.++.+ ++ ....+|.++|+.+.+|+++++|||+.. |.|.++... ..+.
T Consensus 2 v~vi~i~g~-----i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~----s~Gg~~~~~-------------------~~l~ 52 (207)
T TIGR00706 2 IAILPVSGA-----IA-VSPEDFDKKIKRIKDDKSIKALLLRIN----SPGGTVVAS-------------------EEIY 52 (207)
T ss_pred EEEEEEEEE-----Ee-cCHHHHHHHHHHHhhCCCccEEEEEec----CCCCCHHHH-------------------HHHH
Confidence 455666532 11 235789999999999999999999974 777776532 1233
Q ss_pred HHHccCC--CcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCccc------------ccccC--------------C
Q 024298 131 YLQGTFV--KPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ------------MGFHP--------------D 182 (269)
Q Consensus 131 ~~i~~~~--kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~------------~Gl~p--------------~ 182 (269)
..|..++ ||+|+.++|.|.|+|+.|+++||.+++++++.++...+. +|+-+ .
T Consensus 53 ~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~ 132 (207)
T TIGR00706 53 EKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPT 132 (207)
T ss_pred HHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCC
Confidence 3444444 999999999999999999999999999999887663332 33321 0
Q ss_pred CchH----HHHH-----------------hhhhHHHHHHhccCCCCCHHHHHhcCccceeccCChHHHHHH
Q 024298 183 AGAS----FYLS-----------------HLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALY 232 (269)
Q Consensus 183 ~g~~----~~l~-----------------r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~ 232 (269)
...+ ..+. |-+.....+-++.|+.+++++|++.||||++...+++.+...
T Consensus 133 ~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~~~~~~~~~~~~~~~~~~A~~~gLvD~i~~~~~~~~~~~ 203 (207)
T TIGR00706 133 RELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGRQALKLRLVDKLGTEDDALKWLA 203 (207)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHHHHHH
Confidence 0000 0111 111111222346789999999999999999998777776533
|
The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively. |
| >cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=110.93 Aligned_cols=145 Identities=13% Similarity=-0.024 Sum_probs=104.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEE
Q 024298 65 LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (269)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav 144 (269)
-+...+.+|.+.|+.+..|+++++|||+..+..| ++.++.++ .+.+..+...+|||||.+
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg-~~~~~~el-------------------~~~i~~~~~~~kpVia~~ 85 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSG-GLAKLEEL-------------------RQALERFRASGKPVIAYA 85 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCC-CHHHHHHH-------------------HHHHHHHHHhCCeEEEEe
Confidence 4457788999999999999999999999988777 55555443 234444556799999999
Q ss_pred chhcchhhHHHHHhCCEEEEeCCceEecCccc------------ccccC---------CCchHHH-----------HHhh
Q 024298 145 DGITMGCGAGISLQGMYRVVTDKTVFSNPETQ------------MGFHP---------DAGASFY-----------LSHL 192 (269)
Q Consensus 145 ~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~------------~Gl~p---------~~g~~~~-----------l~r~ 192 (269)
+| |.++|+.|+++||.+++.+.+.|+...+. +|+-+ ..+..+. +..+
T Consensus 86 ~~-~~sggy~lasaad~I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~ 164 (222)
T cd07018 86 DG-YSQGQYYLASAADEIYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQAL 164 (222)
T ss_pred CC-CCchhhhhhhhCCEEEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHH
Confidence 98 88999999999999999999999885432 23221 1111110 0011
Q ss_pred -----------------hhHHHHHHhccCCCCCHHHHHhcCccceeccCChHHHH
Q 024298 193 -----------------PGYLGEYLALTGEKLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 193 -----------------~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
+.....+-+..|..+++++|++.||||++...+++.+.
T Consensus 165 l~~~~~~f~~~Va~~R~~~~~~~~~~~~~~~~~~~~A~~~GLvD~i~~~~e~~~~ 219 (222)
T cd07018 165 LDSLWDQYLADVAASRGLSPDALEALIDLGGDSAEEALEAGLVDGLAYRDELEAR 219 (222)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCcHHHHHHHCCCCCcCCcHHHHHHH
Confidence 11111223355999999999999999999987777654
|
Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys |
| >cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=102.14 Aligned_cols=141 Identities=17% Similarity=0.175 Sum_probs=100.5
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHH
Q 024298 52 RAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVY 131 (269)
Q Consensus 52 ~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 131 (269)
.+|.++ ..++......+.++|+++++++ +..|+|.=. |.|+++.. ...+..
T Consensus 2 ~vi~i~-----g~I~~~~~~~l~~~l~~a~~~~-~~~ivl~in----spGG~v~~-------------------~~~I~~ 52 (178)
T cd07021 2 YVIPIE-----GEIDPGLAAFVERALKEAKEEG-ADAVVLDID----TPGGRVDS-------------------ALEIVD 52 (178)
T ss_pred EEEEEe-----eEECHHHHHHHHHHHHHHHhCC-CCeEEEEEE----CcCCCHHH-------------------HHHHHH
Confidence 455564 3466788888999999998876 666666643 45554432 233556
Q ss_pred HHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCch--------HHH------HHhhhhHH-
Q 024298 132 LQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGA--------SFY------LSHLPGYL- 196 (269)
Q Consensus 132 ~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~--------~~~------l~r~~g~~- 196 (269)
.|..+++|||+.|+|.|.++|+.++++||++++++++.|+.++.- +..|+ ... +.+.-|+.
T Consensus 53 ~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~a~iG~~~~v----~~~~~~~~~~K~~~~~~~~~~~~A~~~gr~~ 128 (178)
T cd07021 53 LILNSPIPTIAYVNDRAASAGALIALAADEIYMAPGATIGAAEPI----PGDGNGAADEKVQSYWRAKMRAAAEKKGRDP 128 (178)
T ss_pred HHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCCCeEecCeeE----cCCCccchhHHHHHHHHHHHHHHHHHhCCCH
Confidence 677899999999999999999999999999999999999998543 33322 111 12223431
Q ss_pred --HHHHhccC-------------CCCCHHHHHhcCccceeccCC
Q 024298 197 --GEYLALTG-------------EKLNGVEMIACGLATHYTLNG 225 (269)
Q Consensus 197 --a~~l~ltG-------------~~i~a~eA~~~GLv~~vv~~~ 225 (269)
+..|+-.. -.++++||++.|++|.+.++.
T Consensus 129 ~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~ 172 (178)
T cd07021 129 DIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSL 172 (178)
T ss_pred HHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCH
Confidence 24454443 279999999999999998753
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall |
| >cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.3e-08 Score=81.75 Aligned_cols=138 Identities=13% Similarity=0.165 Sum_probs=99.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.++..+..-|.+.++.++++ .++.|+|.=. |.|+++... ..+...+...++||++.
T Consensus 9 ~I~~~~~~~l~~~l~~A~~~-~~~~i~l~in----SPGG~v~~~-------------------~~I~~~i~~~~~pvv~~ 64 (172)
T cd07015 9 QITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAA-------------------GNIVQRIQQSKIPVIIY 64 (172)
T ss_pred EECHhHHHHHHHHHHHHhcC-CCCeEEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCcCEEEE
Confidence 46777888889999998865 4677776643 556555432 12344556789999999
Q ss_pred Ec---hhcchhhHHHHHhCCEEEEeCCceEecCcccccccCC----C-c---hHHH------HHhhhhH---HHHHHhcc
Q 024298 144 LD---GITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPD----A-G---ASFY------LSHLPGY---LGEYLALT 203 (269)
Q Consensus 144 v~---G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~----~-g---~~~~------l~r~~g~---~a~~l~lt 203 (269)
|+ |.|.++|..++++||.+++.+++.++....-.|..+. . . .... +.+.-|+ .+..++-.
T Consensus 65 v~p~g~~AaSag~~I~~a~~~i~m~p~s~iG~~~pi~~~g~~~~~~~~~~ki~~~~~~~~r~~A~~~Gr~~~~a~~~v~~ 144 (172)
T cd07015 65 VYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITK 144 (172)
T ss_pred EecCCCeehhHHHHHHHhcCceEECCCCEEEEccccccCCCCCccccchHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHh
Confidence 99 9999999999999999999999999998875432120 0 0 0111 1222343 14677778
Q ss_pred CCCCCHHHHHhcCccceeccCC
Q 024298 204 GEKLNGVEMIACGLATHYTLNG 225 (269)
Q Consensus 204 G~~i~a~eA~~~GLv~~vv~~~ 225 (269)
...++++||+++|++|.|+++.
T Consensus 145 ~~~lta~EA~~~G~iD~ia~~~ 166 (172)
T cd07015 145 DLSLTPEEALKYGVIEVVARDI 166 (172)
T ss_pred hcCcCHHHHHHcCCceeeeCCH
Confidence 8999999999999999999863
|
Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle |
| >cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-08 Score=83.55 Aligned_cols=131 Identities=16% Similarity=0.114 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEE
Q 024298 65 LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (269)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav 144 (269)
++..+..++.+.|..++.++..+.|+|.=. |.|+++.. ...++..+...++|+++.+
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~In----SpGG~v~~-------------------~~~i~~~i~~~~~~v~~~~ 65 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEKDIYLYIN----SPGGDVFA-------------------GMAIYDTIKFIKADVVTII 65 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCCCEEEEEE----CCCCcHHH-------------------HHHHHHHHHhcCCCceEEE
Confidence 567889999999999998876666666543 45555432 1224445556788999999
Q ss_pred chhcchhhHHHHHhCC--EEEEeCCceEecCcccccccCCCchHH------------------HHHhhhhHH---HHHHh
Q 024298 145 DGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGASF------------------YLSHLPGYL---GEYLA 201 (269)
Q Consensus 145 ~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~~g~~---a~~l~ 201 (269)
.|.|.++|..++++|| .|++.+++++.+....-|. .|... .+.+..|.. -.+++
T Consensus 66 ~g~aaS~~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~---~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~ 142 (162)
T cd07013 66 DGLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGT---LGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADL 142 (162)
T ss_pred EeehhhHHHHHHHcCCCCcEEEecCEEEEEccCcccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 9999999999999999 5777777777654322111 11111 111223331 14455
Q ss_pred ccCCCCCHHHHHhcCcccee
Q 024298 202 LTGEKLNGVEMIACGLATHY 221 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~v 221 (269)
-.+.-++++||+++||||++
T Consensus 143 ~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 143 ERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred cCCccccHHHHHHcCCCCcC
Confidence 66667799999999999985
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas |
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.3e-08 Score=93.59 Aligned_cols=164 Identities=15% Similarity=0.106 Sum_probs=106.0
Q ss_pred eCCEEEEEEcCC-----CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHH
Q 024298 48 RAKSRAAILNRP-----SNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (269)
Q Consensus 48 ~~~v~~I~ln~p-----~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (269)
++.|++|.++-. ...+.++. +.+.+.|+++..|++|++|||+-.. .|+....
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~---~~~~~~l~~a~~D~~vkaVvLrInS----pGGs~~a---------------- 381 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGG---DTTAAQIRDARLDPKVKAIVLRVNS----PGGSVTA---------------- 381 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCH---HHHHHHHHHHHhCCCCcEEEEEecC----CCCcHHH----------------
Confidence 567888877631 22234444 4677789999999999999999763 3332211
Q ss_pred HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcc------------cccccCCCchH----
Q 024298 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET------------QMGFHPDAGAS---- 186 (269)
Q Consensus 123 ~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~------------~~Gl~p~~g~~---- 186 (269)
.+.+.+.+..++...||||+.+.|.|..||+.++.+||.++|.+.+..+.-.+ ++|+.+....+
T Consensus 382 se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~ 461 (618)
T PRK10949 382 SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLA 461 (618)
T ss_pred HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccC
Confidence 12233334445567899999999999999999999999999999664444222 24442211100
Q ss_pred -------------HHH------------H-----hhhhHHHHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHh
Q 024298 187 -------------FYL------------S-----HLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFT 234 (269)
Q Consensus 187 -------------~~l------------~-----r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~ 234 (269)
..+ . |-+.....+-+..|+.+++++|++.||||++-.-++..+.+.+.
T Consensus 462 ~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~Grv~tg~~A~~~GLVD~lG~~~~ai~~a~~~ 539 (618)
T PRK10949 462 DVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAEL 539 (618)
T ss_pred CccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCCcccHHHHHHcCCCccCCCHHHHHHHHHHH
Confidence 000 0 00111112335689999999999999999998766666554443
|
|
| >PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.6e-08 Score=82.48 Aligned_cols=137 Identities=15% Similarity=0.043 Sum_probs=86.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEE
Q 024298 63 NALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Ia 142 (269)
..++.++...+...|..++.++..+-|.|.=. |.|+|+..- ..++..|...+.|+++
T Consensus 38 g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~In----SpGG~v~~g-------------------~~I~d~i~~~~~~v~t 94 (200)
T PRK00277 38 GEVEDHMANLIVAQLLFLEAEDPDKDIYLYIN----SPGGSVTAG-------------------LAIYDTMQFIKPDVST 94 (200)
T ss_pred CEECHHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCcHHHH-------------------HHHHHHHHhcCCCEEE
Confidence 34788999999999998886543333333321 344444321 1233345567789999
Q ss_pred EEchhcchhhHHHHHhCC--EEEEeCCceEecCcccccccCCCchH------------------HHHHhhhhHH---HHH
Q 024298 143 ILDGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGAS------------------FYLSHLPGYL---GEY 199 (269)
Q Consensus 143 av~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~------------------~~l~r~~g~~---a~~ 199 (269)
.+.|.|.+.|..++++++ .|++.+++++.+-...-|. .|.. ..+....|.. ..+
T Consensus 95 ~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~ 171 (200)
T PRK00277 95 ICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGF---QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEK 171 (200)
T ss_pred EEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999988743 4555555555554332111 1111 1123334441 255
Q ss_pred HhccCCCCCHHHHHhcCccceeccCC
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLNG 225 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~~ 225 (269)
++-.+.-++|+||++.||||+|+++.
T Consensus 172 ~~~~~~~lsa~EA~e~GliD~Ii~~~ 197 (200)
T PRK00277 172 DTDRDNFMSAEEAKEYGLIDEVLTKR 197 (200)
T ss_pred HhhCCccccHHHHHHcCCccEEeecC
Confidence 66677899999999999999999753
|
|
| >PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-07 Score=78.91 Aligned_cols=138 Identities=13% Similarity=0.001 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.++.++..++.+.|..++..+..+.|+|.=. |.|+++..- ..++..|..++.|+++.
T Consensus 43 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~g-------------------~~I~d~i~~~~~~v~t~ 99 (207)
T PRK12553 43 QVDDASANDVMAQLLVLESIDPDRDITLYIN----SPGGSVTAG-------------------DAIYDTIQFIRPDVQTV 99 (207)
T ss_pred eECHHHHHHHHHHHHHHHhCCCCCCEEEEEe----CCCCcHHHH-------------------HHHHHHHHhcCCCcEEE
Confidence 4788999999999999986543333333322 455554321 12444566678899999
Q ss_pred EchhcchhhHHHHHhCC--EEEEeCCceEecCcccc-cccCCCchH------------------HHHHhhhhHH---HHH
Q 024298 144 LDGITMGCGAGISLQGM--YRVVTDKTVFSNPETQM-GFHPDAGAS------------------FYLSHLPGYL---GEY 199 (269)
Q Consensus 144 v~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~-Gl~p~~g~~------------------~~l~r~~g~~---a~~ 199 (269)
+.|.|.+.|.-++++|| .|++.++++|.+-.... |. ..|.. ..+.+..|.. ..+
T Consensus 100 ~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~--~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~ 177 (207)
T PRK12553 100 CTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGG--IRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRK 177 (207)
T ss_pred EEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCC--CccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999 58999999998876542 21 12211 1122333431 255
Q ss_pred HhccCCCCCHHHHHhcCccceeccCCh
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLNGV 226 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~~~ 226 (269)
++-.+.-++|+||+++||||+|+++.+
T Consensus 178 ~~~~~~~lta~EA~e~GliD~I~~~~~ 204 (207)
T PRK12553 178 DTDRDKWLTAEEAKDYGLVDQIITSYR 204 (207)
T ss_pred HHhcCccccHHHHHHcCCccEEcCchh
Confidence 666789999999999999999997644
|
|
| >KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.8e-09 Score=95.19 Aligned_cols=168 Identities=13% Similarity=-0.034 Sum_probs=134.4
Q ss_pred CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhhHHHHHHHHHH
Q 024298 50 KSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQ 128 (269)
Q Consensus 50 ~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 128 (269)
++..+.++ |+ .|..|.++..+|..-++.++.+..+++..+|+.. +-|++|.|..+..... .......+-.+.+
T Consensus 66 ~~~~~dmv-ie-av~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa~ld~~e~vvg~----h~fspa~~m~LlE 139 (380)
T KOG1683|consen 66 GFANADMV-IE-AVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISAGLDRPEMVVGM----HFFSPAHWMQLLE 139 (380)
T ss_pred ccccccee-cc-chhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhhccCchhhhccc----cccCHHHHHHHHH
Confidence 57777787 55 4999999999999999999999888999999988 8999999999887532 3344556667888
Q ss_pred HHHHHccCCCcEEEEEchhcchhh--HHHHHhCCEEEEe--CCceEecCcccccc-cCCCchHHHHHhhhhHH-HHHHhc
Q 024298 129 FVYLQGTFVKPHVAILDGITMGCG--AGISLQGMYRVVT--DKTVFSNPETQMGF-HPDAGASFYLSHLPGYL-GEYLAL 202 (269)
Q Consensus 129 l~~~i~~~~kp~Iaav~G~a~GgG--~~Lal~cD~~ia~--~~a~f~~pe~~~Gl-~p~~g~~~~l~r~~g~~-a~~l~l 202 (269)
++...++++.|+.+++||++--++ +.++.+|+|++.. ..-..+..+...++ .|.+- .-.+...+|.+ +..-+-
T Consensus 140 ii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~-iD~~~t~fGf~~g~~~L~ 218 (380)
T KOG1683|consen 140 IILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWL-IDSLITKFGFRVGERALA 218 (380)
T ss_pred HHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHH-HHHHHHhcCccccHHHHh
Confidence 999999999999999999998888 8899999999998 44455778888773 44432 22334445554 444445
Q ss_pred cCCCCCHHHHHhcCccceeccC
Q 024298 203 TGEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 203 tG~~i~a~eA~~~GLv~~vv~~ 224 (269)
-+.-++.+||.+-|+++++.|.
T Consensus 219 d~~gfdv~eal~~gl~~~~~~r 240 (380)
T KOG1683|consen 219 DGVGFDVAEALAVGLGDEIGPR 240 (380)
T ss_pred hccCccHHHHHhhccchhccch
Confidence 6789999999999999999995
|
|
| >PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.6e-06 Score=74.71 Aligned_cols=139 Identities=15% Similarity=0.065 Sum_probs=93.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEE
Q 024298 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (269)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~I 141 (269)
..+++++-.....+.++.++... +-+|-|.-.+.++. |.+-+ .....+.+...+..+....+|+|
T Consensus 76 ~G~~~~~g~rKa~R~~~lA~~~~-lPvV~lvDtpGa~~-g~~aE-------------~~G~~~~ia~~~~~~s~~~VP~I 140 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKFG-RPVVTFINTAGAYP-GVGAE-------------ERGQGEAIARNLMEMSDLKVPII 140 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCcCC-CHhHH-------------hccHHHHHHHHHHHHhCCCCCEE
Confidence 45678888888888888887643 45555544333332 32211 01234556667778889999999
Q ss_pred EEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH-HHHHHhccCCCCCHHHHHhcCccce
Q 024298 142 AILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGLATH 220 (269)
Q Consensus 142 aav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~-~a~~l~ltG~~i~a~eA~~~GLv~~ 220 (269)
+.|-|.|.|||......||++++.+++.++.- .|.+.....+...-.. .+.+.+ .+++.++.+.|+||+
T Consensus 141 sVI~G~~~gGgA~a~~~~D~v~m~~~a~~~v~------~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~iD~ 210 (256)
T PRK12319 141 AIIIGEGGSGGALALAVADQVWMLENTMYAVL------SPEGFASILWKDGSRATEAAELM----KITAGELLEMGVVDK 210 (256)
T ss_pred EEEeCCcCcHHHHHhhcCCEEEEecCceEEEc------CHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCCCcE
Confidence 99999999999888889999999999877652 2333333322221111 123332 779999999999999
Q ss_pred eccCC
Q 024298 221 YTLNG 225 (269)
Q Consensus 221 vv~~~ 225 (269)
|+|+.
T Consensus 211 ii~e~ 215 (256)
T PRK12319 211 VIPEH 215 (256)
T ss_pred ecCCC
Confidence 99864
|
|
| >cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.4e-07 Score=74.60 Aligned_cols=132 Identities=16% Similarity=0.057 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEE
Q 024298 65 LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAIL 144 (269)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav 144 (269)
++.+...++...+..+..++..+.|+|.=. |.|+|+..- ..+...+...+.|+++.+
T Consensus 18 I~~~~~~~i~~~l~~~~~~~~~~~i~l~in----SpGG~v~~~-------------------~~i~~~l~~~~~~v~t~~ 74 (171)
T cd07017 18 IDDEVANLIIAQLLYLESEDPKKPIYLYIN----SPGGSVTAG-------------------LAIYDTMQYIKPPVSTIC 74 (171)
T ss_pred EcHHHHHHHHHHHHHHHccCCCCceEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEEE
Confidence 677888999999999987755444444432 445554321 123334456689999999
Q ss_pred chhcchhhHHHHHhCC--EEEEeCCceEecCcccccccCCCchHH-----------------HHHhhhhHH---HHHHhc
Q 024298 145 DGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGASF-----------------YLSHLPGYL---GEYLAL 202 (269)
Q Consensus 145 ~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~l~r~~g~~---a~~l~l 202 (269)
.|.|.++|..+++++| .|++.++++|.+-+...+..-. ... .+....|.. -.+++-
T Consensus 75 ~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~--~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~ 152 (171)
T cd07017 75 LGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQ--ASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTD 152 (171)
T ss_pred EeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence 9999999999999999 7999999999988765443211 111 111122331 255556
Q ss_pred cCCCCCHHHHHhcCcccee
Q 024298 203 TGEKLNGVEMIACGLATHY 221 (269)
Q Consensus 203 tG~~i~a~eA~~~GLv~~v 221 (269)
.+.-++++||+++||||+|
T Consensus 153 ~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 153 RDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred CCccccHHHHHHcCCCccC
Confidence 7889999999999999986
|
Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ |
| >PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-06 Score=72.99 Aligned_cols=137 Identities=15% Similarity=0.083 Sum_probs=91.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.++.++...+...|..++..+..+.|.|.=. |.|+++.. ...++..|...+.||++.
T Consensus 31 ~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~a-------------------g~aI~d~i~~~~~~V~t~ 87 (197)
T PRK14512 31 EINKDLSELFQEKILLLEALDSKKPIFVYID----SEGGDIDA-------------------GFAIFNMIRFVKPKVFTI 87 (197)
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHHHHhCCCCEEEE
Confidence 3677888999998888776222233333322 45555432 123444566788999999
Q ss_pred EchhcchhhHHHHHhCCE--EEEeCCceEecCcccccccCCCchHH------------------HHHhhhhHH---HHHH
Q 024298 144 LDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGASF------------------YLSHLPGYL---GEYL 200 (269)
Q Consensus 144 v~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~~g~~---a~~l 200 (269)
+.|.|.+.|.-++++||. |++.++++|.+-...-|+ .|... .+....|.. ..++
T Consensus 88 v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~---~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~ 164 (197)
T PRK14512 88 GVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGF---KGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKD 164 (197)
T ss_pred EEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCcccc---ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHh
Confidence 999999999999999986 899998888765443222 11111 111223331 2455
Q ss_pred hccCCCCCHHHHHhcCccceeccCCh
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNGV 226 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~~ 226 (269)
+-....++|+||+++||||+|+++.+
T Consensus 165 ~~~d~~lta~EA~~yGliD~I~~~~~ 190 (197)
T PRK14512 165 TDRDFWLDSSSAVKYGLVFEVVETRL 190 (197)
T ss_pred hhcCcccCHHHHHHcCCccEeecCcH
Confidence 55668899999999999999998643
|
|
| >CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.3e-06 Score=73.75 Aligned_cols=140 Identities=13% Similarity=0.026 Sum_probs=93.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEE
Q 024298 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (269)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~I 141 (269)
..+++++-.....+.++.++... +-+|-+--.+.+++ |.+-.+ ....+.+...+..+....+|+|
T Consensus 132 ~G~~~p~g~rKa~Rlm~lA~~f~-lPIItlvDTpGA~~-G~~AE~-------------~G~~~aiar~l~~~a~~~VP~I 196 (322)
T CHL00198 132 FGMPSPGGYRKALRLMKHANKFG-LPILTFIDTPGAWA-GVKAEK-------------LGQGEAIAVNLREMFSFEVPII 196 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcCc-CHHHHH-------------HhHHHHHHHHHHHHHcCCCCEE
Confidence 45688999999999999887653 44444443333332 321111 1223455566667788999999
Q ss_pred EEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCHHHHHhcCcccee
Q 024298 142 AILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 221 (269)
Q Consensus 142 aav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~v 221 (269)
++|-|.|.|||......||++++.+++.++. +.|.++++..+. --. ++.+ +-..-.++|+++++.|+||+|
T Consensus 197 sVViGeggsGGAlal~~aD~V~m~e~a~~sV------isPEg~a~Il~~-d~~-~a~~-aA~~~~ita~dL~~~giiD~i 267 (322)
T CHL00198 197 CTIIGEGGSGGALGIGIGDSIMMLEYAVYTV------ATPEACAAILWK-DSK-KSLD-AAEALKITSEDLKVLGIIDEI 267 (322)
T ss_pred EEEeCcccHHHHHhhhcCCeEEEeCCeEEEe------cCHHHHHHHHhc-chh-hHHH-HHHHcCCCHHHHHhCCCCeEe
Confidence 9999999888876666799999999988775 234444443332 222 1222 123368999999999999999
Q ss_pred ccCC
Q 024298 222 TLNG 225 (269)
Q Consensus 222 v~~~ 225 (269)
+|..
T Consensus 268 i~Ep 271 (322)
T CHL00198 268 IPEP 271 (322)
T ss_pred ccCC
Confidence 9843
|
|
| >PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.2e-07 Score=73.78 Aligned_cols=133 Identities=18% Similarity=0.136 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCCce--EEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEE
Q 024298 65 LNTSMVGRLKRLYESWEENPDIG--FVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (269)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~~v~--~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Ia 142 (269)
+|.++...+.+.|..++.++..+ .|.|. |.|+|+.. ...+...|..++.|+++
T Consensus 25 I~~~~~~~~~~~L~~l~~~~~~~~i~i~IN------SpGG~v~~-------------------g~~i~~~i~~~~~~v~t 79 (182)
T PF00574_consen 25 IDEESANRLISQLLYLENEDKNKPINIYIN------SPGGDVDA-------------------GLAIYDAIRSSKAPVTT 79 (182)
T ss_dssp BSHHHHHHHHHHHHHHHHHTSSSEEEEEEE------ECEBCHHH-------------------HHHHHHHHHHSSSEEEE
T ss_pred cCHHHHHHHHHHHHHHhccCCCceEEEEEc------CCCCccHH-------------------HHHHHHHHHhcCCCeEE
Confidence 78899999999888774332222 23344 45666543 22355566778999999
Q ss_pred EEchhcchhhHHHHHhCCE--EEEeCCceEecCcccccccCCCchHH-----------------HHHhhhhHH---HHHH
Q 024298 143 ILDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGASF-----------------YLSHLPGYL---GEYL 200 (269)
Q Consensus 143 av~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~-----------------~l~r~~g~~---a~~l 200 (269)
.+.|.|.+.|.-++++||. |++.+++.|.+-+...+..- .... .+....|.. -.++
T Consensus 80 ~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g--~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~ 157 (182)
T PF00574_consen 80 VVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGG--NASELREQAKELEKLNERIANIYAERTGLSKEEIEEL 157 (182)
T ss_dssp EEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEE--EHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHH
T ss_pred EEeCccccceehhhhcCCcCceeeeecCEEEeecceeeccc--ccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 9999999999999999999 89999999999888655432 1111 111112321 1445
Q ss_pred hccCCCCCHHHHHhcCccceeccC
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~ 224 (269)
+-...-++++||+++||||+|+.+
T Consensus 158 ~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 158 MDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp CSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HhCCccccHHHHHHcCCCCEeccC
Confidence 555677899999999999999864
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A .... |
| >PRK11778 putative inner membrane peptidase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.6e-06 Score=76.24 Aligned_cols=162 Identities=10% Similarity=-0.006 Sum_probs=98.1
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHH
Q 024298 48 RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLY 127 (269)
Q Consensus 48 ~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~ 127 (269)
++.|++|.++.+=..+ -...+-+++...++.+..+ .+|||+-. |.|+.+.... ...
T Consensus 89 ~~~v~VI~~~G~I~~~-~~~~l~e~i~a~l~~A~~~---~aVvLrid----SpGG~v~~s~----------------~a~ 144 (330)
T PRK11778 89 KPRLFVLDFKGDIDAS-EVESLREEITAILAVAKPG---DEVLLRLE----SPGGVVHGYG----------------LAA 144 (330)
T ss_pred CCeEEEEEEEEEECCC-cchhhHHHHHHHHHhccCC---CeEEEEEe----CCCCchhHHH----------------HHH
Confidence 4678888887542111 1123445666666555433 46777755 3444332210 001
Q ss_pred HHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCccc------------ccccCC---------Cch-
Q 024298 128 QFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ------------MGFHPD---------AGA- 185 (269)
Q Consensus 128 ~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~------------~Gl~p~---------~g~- 185 (269)
..+.++....||+++.+++.|..||+.++.+||.+++.+.+.++...+- +|+-+. .+.
T Consensus 145 ~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~p 224 (330)
T PRK11778 145 SQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTL 224 (330)
T ss_pred HHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCC
Confidence 1133456678999999999999999999999999999998876654442 222100 000
Q ss_pred ----H----HHHHhhh-----------hH-H---HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHH
Q 024298 186 ----S----FYLSHLP-----------GY-L---GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYF 233 (269)
Q Consensus 186 ----~----~~l~r~~-----------g~-~---a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~ 233 (269)
+ ..+...+ -. + ..+-+.+|+.+++++|++.||||++...++....+..
T Consensus 225 f~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~dd~i~~~~~ 295 (330)
T PRK11778 225 FGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMK 295 (330)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCHHHHHHHHHh
Confidence 0 0011111 00 1 1334568999999999999999999988887755443
|
|
| >CHL00028 clpP ATP-dependent Clp protease proteolytic subunit | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.4e-06 Score=71.45 Aligned_cols=138 Identities=14% Similarity=0.048 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.+|.++.+++...|-.++.++..+-|.|.=. |.|+|+.. ...++..+...+.||...
T Consensus 38 ~i~~~~a~~ii~~ll~L~~~~~~~~I~l~IN----SpGG~v~~-------------------g~aIyd~m~~~~~~V~Tv 94 (200)
T CHL00028 38 EVDDEIANQLIGLMVYLSIEDDTKDLYLFIN----SPGGSVIS-------------------GLAIYDTMQFVKPDVHTI 94 (200)
T ss_pred eecHHHHHHHHHHHHHHhccCCCCCEEEEEe----CCCcchhh-------------------HHHHHHHHHhcCCCEEEE
Confidence 4899999999999999875443343333221 34444432 122445566788999999
Q ss_pred EchhcchhhHHHHHhCC--EEEEeCCceEecCcccccccCCCch-H-----------------HHHHhhhhHH---HHHH
Q 024298 144 LDGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGA-S-----------------FYLSHLPGYL---GEYL 200 (269)
Q Consensus 144 v~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~-~-----------------~~l~r~~g~~---a~~l 200 (269)
+.|.|.+.|.-|++++| .|++.++++|.+-....|.. .|- . ..+....|.. ..++
T Consensus 95 ~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~--~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~~ 172 (200)
T CHL00028 95 CLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFY--EGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISED 172 (200)
T ss_pred EEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999 59999999998877654421 221 1 1122223431 2556
Q ss_pred hccCCCCCHHHHHhcCccceeccCCh
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNGV 226 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~~ 226 (269)
+-...-++|+||+++||||+|+++.+
T Consensus 173 ~~r~~~lta~EA~eyGliD~I~~~~~ 198 (200)
T CHL00028 173 MERDVFMSATEAKAYGIVDLVAVNNE 198 (200)
T ss_pred hhcCccCCHHHHHHcCCCcEEeecCc
Confidence 66678899999999999999997643
|
|
| >PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-05 Score=71.58 Aligned_cols=140 Identities=12% Similarity=0.040 Sum_probs=93.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEE
Q 024298 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (269)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~I 141 (269)
.-+++++-.....+.++.++.. .+-+|-|--.+.++. |.+-++ ....+.+...+..+....+|+|
T Consensus 129 ~G~~~peg~rKa~R~m~lA~~f-~lPIVtlvDTpGa~~-G~~aE~-------------~G~~~aia~~l~~~a~~~VP~I 193 (319)
T PRK05724 129 FGMPRPEGYRKALRLMKMAEKF-GLPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLKVPII 193 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCCCCCC-CHHHHh-------------ccHHHHHHHHHHHHhCCCCCEE
Confidence 4567888888888888888754 355555554333332 322211 1234566667778889999999
Q ss_pred EEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCHHHHHhcCcccee
Q 024298 142 AILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 221 (269)
Q Consensus 142 aav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~v 221 (269)
+.|-|.|.|||..-...||++++.+++.++. .++-|++..+.+-... +.+..- -..++++++.+.|+||+|
T Consensus 194 sVIiGeg~sGGAla~~~aD~v~m~~~A~~sv-------isPEg~a~Il~~~~~~-a~~aae-~~~ita~~l~~~g~iD~I 264 (319)
T PRK05724 194 CTVIGEGGSGGALAIGVGDRVLMLEYSTYSV-------ISPEGCASILWKDASK-APEAAE-AMKITAQDLKELGIIDEI 264 (319)
T ss_pred EEEeCCccHHHHHHHhccCeeeeecCceEee-------cCHHHHHHHHhcCchh-HHHHHH-HcCCCHHHHHHCCCceEe
Confidence 9999999888876666799999999887654 3333333334333222 222211 456899999999999999
Q ss_pred ccCC
Q 024298 222 TLNG 225 (269)
Q Consensus 222 v~~~ 225 (269)
+|..
T Consensus 265 I~Ep 268 (319)
T PRK05724 265 IPEP 268 (319)
T ss_pred ccCC
Confidence 9853
|
|
| >PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2e-05 Score=72.89 Aligned_cols=138 Identities=12% Similarity=0.042 Sum_probs=91.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEE
Q 024298 63 NALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Ia 142 (269)
.+++++-..-..+.++.++... +-+|-|.-.+.++ .|.+-++ ....+.+...+..+....+|+|+
T Consensus 200 G~~~peGyRKAlR~mklAekf~-lPIVtLVDTpGA~-pG~~AEe-------------~Gqa~aIAr~l~ams~l~VPiIS 264 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKFG-FPILTFVDTPGAY-AGIKAEE-------------LGQGEAIAFNLREMFGLRVPIIA 264 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeCCCcC-CCHHHHH-------------HhHHHHHHHHHHHHhcCCCCEEE
Confidence 4688999999999999887653 4444444332222 2222211 22335566677788899999999
Q ss_pred EEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH-HHHHHhccCCCCCHHHHHhcCcccee
Q 024298 143 ILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGLATHY 221 (269)
Q Consensus 143 av~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~-~a~~l~ltG~~i~a~eA~~~GLv~~v 221 (269)
.|-|.+.+||.....+||++++.+++.++. +.|.++++..+....-. .+.+ .-.++++++++.|+||+|
T Consensus 265 VViGeGgSGGAlalg~aD~VlMle~A~ysV------isPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiID~I 334 (431)
T PLN03230 265 TVIGEGGSGGALAIGCGNRMLMMENAVYYV------ASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVVDEI 334 (431)
T ss_pred EEeCCCCcHHHHHhhcCCEEEEecCCEEEe------cCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCCeEe
Confidence 999999666665555789999999987664 23444444433322111 2333 238999999999999999
Q ss_pred ccCC
Q 024298 222 TLNG 225 (269)
Q Consensus 222 v~~~ 225 (269)
+|..
T Consensus 335 I~Ep 338 (431)
T PLN03230 335 VPEP 338 (431)
T ss_pred ccCC
Confidence 9853
|
|
| >PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2e-05 Score=77.16 Aligned_cols=140 Identities=14% Similarity=0.006 Sum_probs=93.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEE
Q 024298 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (269)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~I 141 (269)
.-+++++-..-..+.++.++... +-+|-|--.++++. |..-++ ....+.+...+..+....+|+|
T Consensus 220 fG~~~peGyRKAlRlmkLAekfg-LPIVtLVDTpGA~p-G~~AEe-------------~Gq~~aIArnl~amasl~VP~I 284 (762)
T PLN03229 220 FGMPTPHGYRKALRMMYYADHHG-FPIVTFIDTPGAYA-DLKSEE-------------LGQGEAIAHNLRTMFGLKVPIV 284 (762)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEECCCcCC-CchhHH-------------HhHHHHHHHHHHHHhCCCCCEE
Confidence 45677888888888888887643 44444443322222 222221 1234566667778889999999
Q ss_pred EEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCHHHHHhcCcccee
Q 024298 142 AILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 221 (269)
Q Consensus 142 aav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~v 221 (269)
++|-|.|.|||......||++++.+++.++. +.|.++++. +.+-... |.+ +-..-.++|++.+++|+||+|
T Consensus 285 SVViGeggSGGAlA~g~aD~VlMle~A~~sV------isPEgaAsI-Lwkd~~~-A~e-AAe~lkiTa~dL~~lGiiD~I 355 (762)
T PLN03229 285 SIVIGEGGSGGALAIGCANKLLMLENAVFYV------ASPEACAAI-LWKSAKA-APK-AAEKLRITAQELCRLQIADGI 355 (762)
T ss_pred EEEeCCcchHHHHHhhcCCEEEEecCCeEEe------cCHHHHHHH-HhcCccc-HHH-HHHHcCCCHHHHHhCCCCeee
Confidence 9999999988888778899999999887654 233443333 3222221 211 223468999999999999999
Q ss_pred ccCC
Q 024298 222 TLNG 225 (269)
Q Consensus 222 v~~~ 225 (269)
+|..
T Consensus 356 IpEp 359 (762)
T PLN03229 356 IPEP 359 (762)
T ss_pred ccCC
Confidence 9853
|
|
| >TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.2e-05 Score=70.65 Aligned_cols=139 Identities=12% Similarity=0.046 Sum_probs=91.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEE
Q 024298 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (269)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~I 141 (269)
.-+++++-.....+.++.++.. .+-+|-|--.+.+++ |.+-++ ....+.+...+..+....+|+|
T Consensus 129 ~G~~~p~g~rKa~R~m~lA~~f-~iPvVtlvDTpGa~~-g~~aE~-------------~G~~~aia~~l~a~s~~~VP~I 193 (316)
T TIGR00513 129 FGMPAPEGYRKALRLMKMAERF-KMPIITFIDTPGAYP-GIGAEE-------------RGQSEAIARNLREMARLGVPVI 193 (316)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEECCCCCC-CHHHHH-------------HHHHHHHHHHHHHHHcCCCCEE
Confidence 3567888888888888888764 344554443333222 322211 1233556667777889999999
Q ss_pred EEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhh-HHHHHHhccCCCCCHHHHHhcCccce
Q 024298 142 AILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG-YLGEYLALTGEKLNGVEMIACGLATH 220 (269)
Q Consensus 142 aav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g-~~a~~l~ltG~~i~a~eA~~~GLv~~ 220 (269)
+.|-|.|.|||..-...||++++.+++.++. +.|.++.+..+...-- ..+.+. ..++++++.+.|+||+
T Consensus 194 sVViGeggsGGAla~~~aD~v~m~~~a~~sV------isPEg~a~Il~kd~~~a~~aae~----~~~ta~~l~~~G~iD~ 263 (316)
T TIGR00513 194 CTVIGEGGSGGALAIGVGDKVNMLEYSTYSV------ISPEGCAAILWKDASKAPKAAEA----MKITAPDLKELGLIDS 263 (316)
T ss_pred EEEecccccHHHhhhccCCEEEEecCceEEe------cCHHHHHHHhccchhhHHHHHHH----ccCCHHHHHHCCCCeE
Confidence 9999999888776555799999999987764 2334433333322111 122222 5678999999999999
Q ss_pred eccCC
Q 024298 221 YTLNG 225 (269)
Q Consensus 221 vv~~~ 225 (269)
|+|..
T Consensus 264 II~ep 268 (316)
T TIGR00513 264 IIPEP 268 (316)
T ss_pred eccCC
Confidence 99854
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.7e-06 Score=68.32 Aligned_cols=137 Identities=15% Similarity=0.014 Sum_probs=89.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.++.++..++...|..++.++..+-|+|.=. |.|+|+..- ..++..+...+.|+...
T Consensus 34 ~I~~~~~~~ii~~L~~l~~~~~~~~i~l~In----SpGG~v~~g-------------------~~I~d~l~~~~~~v~t~ 90 (191)
T TIGR00493 34 EVNDSVANLIVAQLLFLEAEDPEKDIYLYIN----SPGGSITAG-------------------LAIYDTMQFIKPDVSTI 90 (191)
T ss_pred EEChHHHHHHHHHHHHhhccCCCCCEEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEE
Confidence 3677888888888888886543344443322 445554321 12333445566677777
Q ss_pred EchhcchhhHHHHHhCC--EEEEeCCceEecCcccccccCCCchH---------------HHHHhhhhH-H--HHHHhcc
Q 024298 144 LDGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGAS---------------FYLSHLPGY-L--GEYLALT 203 (269)
Q Consensus 144 v~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~l~r~~g~-~--a~~l~lt 203 (269)
+.|.|.+.|.-+++++| .|++.++++|.+-+..-|......-. ..+.+..|. . ..+++-.
T Consensus 91 ~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~ 170 (191)
T TIGR00493 91 CIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTER 170 (191)
T ss_pred EEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhC
Confidence 88999999999988766 59999999999966543321111111 012233444 1 2556677
Q ss_pred CCCCCHHHHHhcCccceecc
Q 024298 204 GEKLNGVEMIACGLATHYTL 223 (269)
Q Consensus 204 G~~i~a~eA~~~GLv~~vv~ 223 (269)
+.-++|+||+++||||+|+.
T Consensus 171 ~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 171 DFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred CccCcHHHHHHcCCccEEec
Confidence 88999999999999999975
|
This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model. |
| >COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.5e-06 Score=74.32 Aligned_cols=140 Identities=16% Similarity=0.116 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcc
Q 024298 70 VGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITM 149 (269)
Q Consensus 70 ~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~ 149 (269)
.+...+.|+.+..|+.+++|+|.=. |.|+....- +.+.+.++++..-. ||++.|+++|.
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~in----SPGG~v~as----------------~~i~~~l~~l~~~~-PV~v~v~~~AA 140 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRIN----SPGGSVVAS----------------ELIARALKRLRAKK-PVVVSVGGYAA 140 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEE----CcCCchhHH----------------HHHHHHHHHHhhcC-CEEEEECCeec
Confidence 4555666888889999999999865 445443221 23333444555555 99999999999
Q ss_pred hhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHh--------------------------------------
Q 024298 150 GCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSH-------------------------------------- 191 (269)
Q Consensus 150 GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r-------------------------------------- 191 (269)
.||+.++++||.+||++.+..+=-.+..+. |.. ...+.+
T Consensus 141 SGGY~IA~aAd~I~a~p~si~GSIGVi~~~-~~~--~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~ 217 (317)
T COG0616 141 SGGYYIALAADKIVADPSSITGSIGVISGA-PNF--EELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDET 217 (317)
T ss_pred chhhhhhccCCEEEecCCceeeeceeEEec-CCH--HHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHH
Confidence 999999999999999998876655444331 111 111110
Q ss_pred ------hhhH------HHHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHH
Q 024298 192 ------LPGY------LGEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYF 233 (269)
Q Consensus 192 ------~~g~------~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~ 233 (269)
.+.. ....-+.+|+-+++++|.+.||||++-..++....+..
T Consensus 218 y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~~~av~~~~~ 271 (317)
T COG0616 218 YDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGLDDAVKDAAE 271 (317)
T ss_pred HHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCHHHHHHHHHH
Confidence 0111 11335678999999999999999999976665544333
|
|
| >TIGR03133 malonate_beta malonate decarboxylase, beta subunit | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00013 Score=64.61 Aligned_cols=150 Identities=12% Similarity=0.046 Sum_probs=96.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcC----CCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEEN----PDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d----~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
|.++-.+..-..-+++...-..+..+++.+.+| ...-+|.+.- |.|..+.+-.. ....+.+.+
T Consensus 61 v~v~a~D~t~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~d-----SgGaRlqEg~~--------~L~~~a~i~ 127 (274)
T TIGR03133 61 VVVAAQEGRFQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLD-----TGGVRLQEANA--------GLIAIAEIM 127 (274)
T ss_pred EEEEEECCCccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEc-----CCCcChhhhHH--------HHHHHHHHH
Confidence 444444444466788888889999999998762 1233555554 34444432110 111222222
Q ss_pred HHHHHHHccCCCcEEEEEchh--cchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH---HHHHHh
Q 024298 127 YQFVYLQGTFVKPHVAILDGI--TMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY---LGEYLA 201 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~--a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~---~a~~l~ 201 (269)
.. +..+... +|+|+.+.|+ |+||+..++.+||++|+++++++++. +...+....|. ...+-.
T Consensus 128 ~~-~~~ls~~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~a~i~~a-----------GP~VIe~~~G~e~~~~~d~~ 194 (274)
T TIGR03133 128 RA-ILDARAA-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRA 194 (274)
T ss_pred HH-HHHHhCC-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCCcEEecc-----------CHHHHHHhcCCCccCHHHhc
Confidence 22 2334444 9999999999 89999999999999999999888773 22323333442 124444
Q ss_pred ccCCCCCHHHHHhcCccceeccCCh
Q 024298 202 LTGEKLNGVEMIACGLATHYTLNGV 226 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~~~ 226 (269)
|..+.+.+......|++|.+++++.
T Consensus 195 l~~~~lGG~~~~~sG~~D~~v~dd~ 219 (274)
T TIGR03133 195 LVWRTTGGKHRFLSGDADVLVEDDV 219 (274)
T ss_pred ccccccchHhHhhcccceEEeCCHH
Confidence 4555677777888999999999854
|
Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase. |
| >PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.3e-05 Score=66.33 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=94.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCce--EEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcE
Q 024298 63 NALNTSMVGRLKRLYESWEENPDIG--FVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPH 140 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~--~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~ 140 (269)
..++.++.+.+...|-.++.++.-+ -|-|. |.|+|+..- ..++..|...+-||
T Consensus 34 ~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~IN------SpGG~v~~G-------------------laIyd~m~~~~~~V 88 (201)
T PRK14513 34 TPIESQMANTIVAQLLLLDSQNPEQEIQMYIN------CPGGEVYAG-------------------LAIYDTMRYIKAPV 88 (201)
T ss_pred CEEcHHHHHHHHHHHHHhhccCCCCCEEEEEE------CCCCchhhH-------------------HHHHHHHHhcCCCE
Confidence 3588889999988888887543212 23344 445544321 23445666788899
Q ss_pred EEEEchhcchhhHHHHHhCCE--EEEeCCceEecCcccccccCCCchH-H-----------------HHHhhhhHH---H
Q 024298 141 VAILDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGAS-F-----------------YLSHLPGYL---G 197 (269)
Q Consensus 141 Iaav~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~-~-----------------~l~r~~g~~---a 197 (269)
...+.|.|.+.|.-|++++|- |++.+++++-+-....|. .|.. . .+.+..|.. -
T Consensus 89 ~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~---~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I 165 (201)
T PRK14513 89 STICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGF---RGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKL 165 (201)
T ss_pred EEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 999999999999999999996 899999999887665443 2211 1 112233432 1
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCCh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGV 226 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~ 226 (269)
.+++-...-++|+||+++||||+|+++.+
T Consensus 166 ~~~~~rd~~msa~EA~eyGliD~I~~~~~ 194 (201)
T PRK14513 166 LRDMERDYFMSPEEAKAYGLIDSVIEPTR 194 (201)
T ss_pred HHHhccCcccCHHHHHHcCCCcEEeccCC
Confidence 55556678899999999999999998654
|
|
| >PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.1e-05 Score=66.46 Aligned_cols=136 Identities=11% Similarity=0.061 Sum_probs=90.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcC---CCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCc
Q 024298 63 NALNTSMVGRLKRLYESWEEN---PDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKP 139 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d---~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp 139 (269)
..+|..+.+.+...|..++.. .++. +.|.+ .|+++..- ..++..+...+.|
T Consensus 61 ~~Idd~~a~~i~aqLl~L~~~~~~~~I~-lyINS------pGGsv~aG-------------------laIyd~m~~~~~~ 114 (221)
T PRK14514 61 TQIDDYTANTIQAQLLYLDSVDPGKDIS-IYINS------PGGSVYAG-------------------LGIYDTMQFISSD 114 (221)
T ss_pred CEEcHHHHHHHHHHHHHHhccCCCCCEE-EEEEC------CCcchhhH-------------------HHHHHHHHhcCCC
Confidence 347888888998877777643 2332 33444 34443211 1244456678889
Q ss_pred EEEEEchhcchhhHHHHHhCCE--EEEeCCceEecCcccccccCCCchHH---------------HHHhhhhHH---HHH
Q 024298 140 HVAILDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGASF---------------YLSHLPGYL---GEY 199 (269)
Q Consensus 140 ~Iaav~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~r~~g~~---a~~ 199 (269)
|.+.+.|.|.+.|..|++++|. |++.+++++.+-...-|......-.. .+.+..|.. ..+
T Consensus 115 V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~ 194 (221)
T PRK14514 115 VATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWA 194 (221)
T ss_pred EEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999999996 88999998888665433321111000 111233441 255
Q ss_pred HhccCCCCCHHHHHhcCccceeccC
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~ 224 (269)
++-...-++|+||+++||||+|+..
T Consensus 195 ~~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 195 DSDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred HhhcCccCCHHHHHHcCCccEEeec
Confidence 5666788999999999999999864
|
|
| >PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.6e-05 Score=65.06 Aligned_cols=139 Identities=13% Similarity=-0.003 Sum_probs=92.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.+|.+..+++...|..++.++..+-|.+.=. |.|+++..- ..++..+...+.||...
T Consensus 33 ~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~IN----SpGG~v~~g-------------------~aIyd~m~~~~~~V~t~ 89 (196)
T PRK12551 33 PVTSDSANRIVAQLLFLEAEDPEKDIYLYIN----SPGGSVYDG-------------------LGIFDTMQHVKPDVHTV 89 (196)
T ss_pred eecHHHHHHHHHHHHHhhccCCCCCEEEEEe----CCCcchhhH-------------------HHHHHHHHhcCCCEEEE
Confidence 4889999999999999885432233333322 445554321 12444556778889999
Q ss_pred EchhcchhhHHHHHhCCE--EEEeCCceEecCcccccccCCCchHH---------------HHHhhhhHH---HHHHhcc
Q 024298 144 LDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGASF---------------YLSHLPGYL---GEYLALT 203 (269)
Q Consensus 144 v~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~r~~g~~---a~~l~lt 203 (269)
+.|.|.+.|..|++++|. |++.+++++.+-...-|..-...-.. .+.+..|.. -.+++-.
T Consensus 90 ~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~r 169 (196)
T PRK12551 90 CVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDR 169 (196)
T ss_pred EEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhc
Confidence 999999999999999985 78888888888665433210000000 112223431 2555566
Q ss_pred CCCCCHHHHHhcCccceeccCC
Q 024298 204 GEKLNGVEMIACGLATHYTLNG 225 (269)
Q Consensus 204 G~~i~a~eA~~~GLv~~vv~~~ 225 (269)
..-++|+||+++||||+|++..
T Consensus 170 d~~msa~EA~eyGliD~I~~~~ 191 (196)
T PRK12551 170 DFFMSPSEAVEYGLIDLVIDKR 191 (196)
T ss_pred CcCCCHHHHHHcCCCcEEeccC
Confidence 6789999999999999999864
|
|
| >PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.9e-05 Score=66.55 Aligned_cols=97 Identities=19% Similarity=0.161 Sum_probs=76.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEE
Q 024298 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (269)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~I 141 (269)
.+.++.+..+++.++++....+..+- ++|. +.|+++.. ...+.+.+.+++.+++
T Consensus 69 ~~~I~i~dse~v~raI~~~~~~~~Id-Lii~------TpGG~v~A-------------------A~~I~~~l~~~~~~v~ 122 (285)
T PF01972_consen 69 YRYIDIDDSEFVLRAIREAPKDKPID-LIIH------TPGGLVDA-------------------AEQIARALREHPAKVT 122 (285)
T ss_pred ceeEcHhhHHHHHHHHHhcCCCCceE-EEEE------CCCCcHHH-------------------HHHHHHHHHhCCCCEE
Confidence 36689999999999999887765553 3343 34554432 2234456667899999
Q ss_pred EEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCc
Q 024298 142 AILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAG 184 (269)
Q Consensus 142 aav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g 184 (269)
+.|+..|..+|.-++++||-+++.+.+.+|-.+.++|-.|...
T Consensus 123 v~VP~~A~SAGTlIALaADeIvM~p~a~LGpiDPqi~~~pA~s 165 (285)
T PF01972_consen 123 VIVPHYAMSAGTLIALAADEIVMGPGAVLGPIDPQIGQYPAAS 165 (285)
T ss_pred EEECcccccHHHHHHHhCCeEEECCCCccCCCCccccCCChHH
Confidence 9999999999999999999999999999999999999888643
|
The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane |
| >PRK05654 acetyl-CoA carboxylase subunit beta; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00028 Score=63.20 Aligned_cols=156 Identities=11% Similarity=0.051 Sum_probs=99.5
Q ss_pred EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHH
Q 024298 47 GRAKSRAAILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFET 125 (269)
Q Consensus 47 ~~~~v~~I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~ 125 (269)
.+|.-..|.-|++. ..-+++....+.+.++++.+... .+-+|.+...| |+...+ + ....... ..
T Consensus 118 I~G~~V~v~a~D~~f~gGS~g~~~~eKi~r~~e~A~~~-~lPlV~l~dsg-----GarmqE-------g-i~sL~~~-ak 182 (292)
T PRK05654 118 IEGMPVVLAVMDFSFMGGSMGSVVGEKIVRAVERAIEE-KCPLVIFSASG-----GARMQE-------G-LLSLMQM-AK 182 (292)
T ss_pred ECCEEEEEEEEecccccCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----Ccchhh-------h-hhHHHhH-HH
Confidence 34544445555554 67889999999999999998765 46677776543 332222 0 0011111 22
Q ss_pred HHHHHHHHccCCCcEEEEEchhcchhhHH-HHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccC
Q 024298 126 LYQFVYLQGTFVKPHVAILDGITMGCGAG-ISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTG 204 (269)
Q Consensus 126 ~~~l~~~i~~~~kp~Iaav~G~a~GgG~~-Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG 204 (269)
....+.++.....|.|+++.|+|.||+.. +++.+|++|+.+++.+++...+ .+...++. ++ .-
T Consensus 183 ~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------vie~~~~e---~l--pe 246 (292)
T PRK05654 183 TSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPKALIGFAGPR-----------VIEQTVRE---KL--PE 246 (292)
T ss_pred HHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecCcEEEecCHH-----------HHHhhhhh---hh--hh
Confidence 22344456677899999999999999764 6778999999999888774331 11111111 11 11
Q ss_pred CCCCHHHHHhcCccceeccCChHHHHHHH
Q 024298 205 EKLNGVEMIACGLATHYTLNGVRYTALYF 233 (269)
Q Consensus 205 ~~i~a~eA~~~GLv~~vv~~~~l~~~~~~ 233 (269)
+.-+++-+.+.|+||.|+++.++-+....
T Consensus 247 ~~~~ae~~~~~G~vD~Vv~~~e~r~~l~~ 275 (292)
T PRK05654 247 GFQRAEFLLEHGAIDMIVHRRELRDTLAS 275 (292)
T ss_pred hhcCHHHHHhCCCCcEEECHHHHHHHHHH
Confidence 12256667789999999999999877333
|
|
| >PRK07189 malonate decarboxylase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00017 Score=64.52 Aligned_cols=150 Identities=13% Similarity=0.067 Sum_probs=92.3
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCC----CceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENP----DIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~----~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
|..+-.+..-..-+++......+..+++.+.++. -+-+|.+.- |.|..+.+-. .....+.+.+
T Consensus 70 v~v~a~D~tf~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~d-----SGGaRlqEg~--------~~L~~~a~i~ 136 (301)
T PRK07189 70 VVVAAQEGRFMGGSVGEVHGAKLAGALELAAEDNRNGIPTAVLLLFE-----TGGVRLQEAN--------AGLAAIAEIM 136 (301)
T ss_pred EEEEEECCCccCcCcCHHHHHHHHHHHHHHHHhCCCCCCCCEEEEec-----CCCcCccchH--------HHHHHHHHHH
Confidence 4445555555678899999999999999987664 145566554 3444443211 0111222222
Q ss_pred HHHHHHHccCCCcEEEEEchh--cchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH-H--HHHHh
Q 024298 127 YQFVYLQGTFVKPHVAILDGI--TMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-L--GEYLA 201 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~--a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~-~--a~~l~ 201 (269)
..+ ..+... +|+|+.+.|+ |+||+...+.+||++|+++++++++. |...+....|. . +.+-.
T Consensus 137 ~~~-~~ls~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~a~igla-----------GP~VIe~~~G~e~~d~~d~~ 203 (301)
T PRK07189 137 RAI-VDLRAA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEEGRLGLS-----------GPEVIEQEAGVEEFDSRDRA 203 (301)
T ss_pred HHH-HHHhCC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECCcEEecc-----------CHHHHHHhcCCcccCHHHhc
Confidence 222 234444 9999999999 99999999999999999999887773 22222232331 1 22322
Q ss_pred ccCCCCCHHHHHhcCccceeccCCh
Q 024298 202 LTGEKLNGVEMIACGLATHYTLNGV 226 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~~~ 226 (269)
+-.+.+.+......|.+|.+++++.
T Consensus 204 ~vw~~lGG~h~~~sG~~D~~v~dd~ 228 (301)
T PRK07189 204 LVWRTTGGKHRYLSGLADALVDDDV 228 (301)
T ss_pred ccccccCcceeeecccceEEeCCHH
Confidence 2222233334556899999998765
|
|
| >TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00054 Score=61.13 Aligned_cols=152 Identities=9% Similarity=0.062 Sum_probs=97.0
Q ss_pred eCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAK-SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~-v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
+|. |.++..|..-..-+++....+.+.++++.+... .+-+|.+...| |+-+.+ +. ...... ...
T Consensus 118 ~G~~V~v~a~D~~f~gGSmg~~~geKi~r~~e~A~~~-~lPlV~l~dSg-----GaRmqE-------g~-~sL~~~-ak~ 182 (285)
T TIGR00515 118 YGMPIVVAVFDFAFMGGSMGSVVGEKFVRAIEKALED-NCPLIIFSASG-----GARMQE-------AL-LSLMQM-AKT 182 (285)
T ss_pred CCEEEEEEEEeccccCCCccHHHHHHHHHHHHHHHHc-CCCEEEEEcCC-----Cccccc-------ch-hHHHhH-HHH
Confidence 444 343444433467889999999999999988754 46677776543 332211 11 111122 122
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHH-HHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCC
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAG-ISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGE 205 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~-Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~ 205 (269)
...+.++.....|.|+++.|+|.||+.. +++.+|++|+.+++.+++.... .+...+|. ++ .-+
T Consensus 183 ~~~~~~~~~~~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~A~ig~aGpr-----------Vie~ti~e---~l--pe~ 246 (285)
T TIGR00515 183 SAALAKMSERGLPYISVLTDPTTGGVSASFAMLGDLNIAEPKALIGFAGPR-----------VIEQTVRE---KL--PEG 246 (285)
T ss_pred HHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhCCCEEEEECCeEEEcCCHH-----------HHHHHhcC---cc--chh
Confidence 2234456677899999999999999754 6679999999999888874332 11222221 11 111
Q ss_pred CCCHHHHHhcCccceeccCChHHHH
Q 024298 206 KLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 206 ~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
--+++-+.+.|+||.|+++.++-+.
T Consensus 247 ~q~ae~~~~~G~vD~iv~~~~~r~~ 271 (285)
T TIGR00515 247 FQTSEFLLEHGAIDMIVHRPEMKKT 271 (285)
T ss_pred cCCHHHHHhCCCCcEEECcHHHHHH
Confidence 2255667789999999999999876
|
The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. |
| >CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00069 Score=60.45 Aligned_cols=150 Identities=8% Similarity=0.031 Sum_probs=93.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (269)
|.+.-.+-.-..-+++...-+.+.++++.+.... +-+|.+.. |.|+.+.+-.. ....+.+....+.
T Consensus 135 v~v~a~Dftf~gGSmG~v~geKi~ra~e~A~~~r-lPlV~l~~-----SGGARmQEg~~--------sL~qmak~saa~~ 200 (296)
T CHL00174 135 VALGVMDFQFMGGSMGSVVGEKITRLIEYATNES-LPLIIVCA-----SGGARMQEGSL--------SLMQMAKISSALY 200 (296)
T ss_pred EEEEEECCcccccCcCHHHHHHHHHHHHHHHHcC-CCEEEEEC-----CCCccccccch--------hhhhhHHHHHHHH
Confidence 4444555444678899999999999999987654 56677665 34444422110 0111111111111
Q ss_pred HHHccCCCcEEEEEchhcchhhHHH-HHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCH
Q 024298 131 YLQGTFVKPHVAILDGITMGCGAGI-SLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNG 209 (269)
Q Consensus 131 ~~i~~~~kp~Iaav~G~a~GgG~~L-al~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a 209 (269)
+....-..|.|+++.|+|.||+... ++.||++|+.+++.+++...+ .+...+|. - +.-+-=++
T Consensus 201 ~~~~~~~vP~Isvl~gPt~GG~aas~a~l~Diiiae~~A~IgfAGPr-----------VIe~t~ge----~-lpe~fq~a 264 (296)
T CHL00174 201 DYQSNKKLFYISILTSPTTGGVTASFGMLGDIIIAEPNAYIAFAGKR-----------VIEQTLNK----T-VPEGSQAA 264 (296)
T ss_pred HHHHcCCCCEEEEEcCCCchHHHHHHHHcccEEEEeCCeEEEeeCHH-----------HHHHhcCC----c-CCcccccH
Confidence 1122457999999999999999765 667999999888877765221 11111111 0 11112246
Q ss_pred HHHHhcCccceeccCChHHHH
Q 024298 210 VEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 210 ~eA~~~GLv~~vv~~~~l~~~ 230 (269)
+-.++.|+||.||+..++-+.
T Consensus 265 e~l~~~G~vD~iV~r~~lr~~ 285 (296)
T CHL00174 265 EYLFDKGLFDLIVPRNLLKGV 285 (296)
T ss_pred HHHHhCcCceEEEcHHHHHHH
Confidence 668899999999999988876
|
|
| >PF01343 Peptidase_S49: Peptidase family S49 peptidase classification | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.2e-06 Score=66.03 Aligned_cols=100 Identities=16% Similarity=0.054 Sum_probs=64.0
Q ss_pred ccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCccc------------ccc---------cCCCc-----hH-
Q 024298 134 GTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ------------MGF---------HPDAG-----AS- 186 (269)
Q Consensus 134 ~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~------------~Gl---------~p~~g-----~~- 186 (269)
....|||||.++|.|..+|+.|+.+||-+++.+.+.++...+. +|+ ....+ .+
T Consensus 3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s~ 82 (154)
T PF01343_consen 3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMSE 82 (154)
T ss_dssp HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--H
T ss_pred cccCCeEEEEECCcchhHHHHHHHcCCEEEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCCH
Confidence 4678999999999999999999999999999998877765442 332 11111 00
Q ss_pred ---HHHHhh-----------h----h--HHHHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHH
Q 024298 187 ---FYLSHL-----------P----G--YLGEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYF 233 (269)
Q Consensus 187 ---~~l~r~-----------~----g--~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~ 233 (269)
..+.+. + | ....+-+..|..+++++|++.||||++-..+++.+.+.+
T Consensus 83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~ 149 (154)
T PF01343_consen 83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAK 149 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHH
Confidence 011110 1 1 111233578999999999999999999988887766433
|
; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A. |
| >TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00014 Score=71.23 Aligned_cols=86 Identities=9% Similarity=-0.115 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchh
Q 024298 68 SMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGI 147 (269)
Q Consensus 68 ~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~ 147 (269)
-.+.++.++++.+.+|+.|++|||.-.+ +.|.++..+ +.+.+.+..+....|||||..+++
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~---~~g~~~~~~----------------~ei~~ai~~fk~sgKpVvA~~~~~ 136 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSN---FSGWDSPHL----------------VEIGSALSEFKDSGKPVYAYGTNY 136 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccC---CCCCCHHHH----------------HHHHHHHHHHHhcCCeEEEEEccc
Confidence 3567999999999999999999999753 123333221 233344445566799999988877
Q ss_pred cchhhHHHHHhCCEEEEeCCceEecC
Q 024298 148 TMGCGAGISLQGMYRVVTDKTVFSNP 173 (269)
Q Consensus 148 a~GgG~~Lal~cD~~ia~~~a~f~~p 173 (269)
+ -+|+.|+.+||.+++.+.+.+++.
T Consensus 137 ~-s~~YylAs~AD~I~~~p~G~v~~~ 161 (584)
T TIGR00705 137 S-QGQYYLASFADEIILNPMGSVDLH 161 (584)
T ss_pred c-chhhhhhhhCCEEEECCCceEEee
Confidence 5 678999999999999998777553
|
E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. |
| >TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00089 Score=58.23 Aligned_cols=156 Identities=10% Similarity=-0.051 Sum_probs=91.9
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHH-hcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAKSRAAILNRPSNLNALNTSMVGRLKRLYESW-EENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~-~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
+|.-..|.=|+|.. .++.+-...+...+... +.+..+-+|.|--. +.|-.|..- +.....+.+
T Consensus 30 ~G~~V~vIa~~~~~--~~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDt-pG~~~g~~a-------------E~~G~~~a~ 93 (238)
T TIGR03134 30 AGGKVTVIGVVPDA--EVGLDEALALAQAVLDVIEADDKRPIVVLVDT-PSQAYGRRE-------------ELLGINQAL 93 (238)
T ss_pred CCEEEEEEEECCCC--cCChHHHHHHHHHHHHHHHhcCCCCEEEEEeC-CCCCCCHHH-------------HHHHHHHHH
Confidence 34444455555542 68877777777878775 44455555555432 223333222 222233344
Q ss_pred HHHHHH---HccCCCcEEEEEchhcchhhHH-HHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhc
Q 024298 127 YQFVYL---QGTFVKPHVAILDGITMGCGAG-ISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLAL 202 (269)
Q Consensus 127 ~~l~~~---i~~~~kp~Iaav~G~a~GgG~~-Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~l 202 (269)
.+++.. ....+.|+|+.|-|.++|||+. +.+.+|.++|.+++.+ +..+.-+++..+.+-... +.++.-
T Consensus 94 A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~A~i-------~vm~~e~aa~I~~~~~~~-~~e~a~ 165 (238)
T TIGR03134 94 AHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPGAMV-------HVMDLESMARVTKRSVEE-LEALAK 165 (238)
T ss_pred HHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCCcEE-------EecCHHHHHHHHccCHhH-HHHHHH
Confidence 444444 4466699999999999998874 5445788877766544 555544444434333322 222221
Q ss_pred c--CCCCCHHHHHhcCccceeccCChH
Q 024298 203 T--GEKLNGVEMIACGLATHYTLNGVR 227 (269)
Q Consensus 203 t--G~~i~a~eA~~~GLv~~vv~~~~l 227 (269)
. -...+.+.+.+.|+||+|+++.+-
T Consensus 166 ~~~~~a~~~~~~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 166 SSPVFAPGIENFVKLGGVHALLDVADA 192 (238)
T ss_pred hhhhhccCHHHHHhCCCccEEeCCCCc
Confidence 1 134677789999999999997664
|
Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity. |
| >COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00036 Score=58.75 Aligned_cols=97 Identities=12% Similarity=0.008 Sum_probs=64.7
Q ss_pred HHHHHccCCCcEEEEEchhcchhhHHHHHhCCEE--EEeCCceEecCcccccccCCCchHHH------------------
Q 024298 129 FVYLQGTFVKPHVAILDGITMGCGAGISLQGMYR--VVTDKTVFSNPETQMGFHPDAGASFY------------------ 188 (269)
Q Consensus 129 l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~--ia~~~a~f~~pe~~~Gl~p~~g~~~~------------------ 188 (269)
++..+...+.||...+-|.|...|..|++++|.. ++.+++++-+-... |.+- |.+.-
T Consensus 77 Iydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~-gg~~--G~a~Di~i~A~ei~~~~~~l~~i 153 (200)
T COG0740 77 IYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPS-GGAQ--GQASDIEIHAREILKIKERLNRI 153 (200)
T ss_pred HHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCC-ccCc--cCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445678999999999999999999999999874 77777766654443 2211 11110
Q ss_pred HHhhhhHH-H--HHHhccCCCCCHHHHHhcCccceeccCChHH
Q 024298 189 LSHLPGYL-G--EYLALTGEKLNGVEMIACGLATHYTLNGVRY 228 (269)
Q Consensus 189 l~r~~g~~-a--~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~ 228 (269)
+....|.. . ....-...-++|+||+++||||+|....+..
T Consensus 154 ~a~~TGq~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~~~~~ 196 (200)
T COG0740 154 YAEHTGQTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIESREAA 196 (200)
T ss_pred HHHHcCCCHHHHHHhhcccccCCHHHHHHcCCcceeccccccc
Confidence 11112221 1 2233345678999999999999999876544
|
|
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0021 Score=61.92 Aligned_cols=138 Identities=12% Similarity=0.096 Sum_probs=92.6
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccC--ChhHHHHhhccCChhhHHHHHHHHHHH
Q 024298 52 RAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGG--DVIALYQLLNEGKFEDFKNFFETLYQF 129 (269)
Q Consensus 52 ~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~--Dl~~~~~~~~~~~~~~~~~~~~~~~~l 129 (269)
.++-.+.--...+++......+..+++.+..+. +-+|.|.- |.|. ++.+-.. ....+.+.+. -
T Consensus 60 ~v~a~D~t~~gGs~g~~~~~Ki~ra~~~A~~~~-~P~v~l~d-----sgGa~~r~~eg~~--------~l~~~g~i~~-~ 124 (493)
T PF01039_consen 60 VVIAQDFTVLGGSVGEVHGEKIARAIELALENG-LPLVYLVD-----SGGAFLRMQEGVE--------SLMGMGRIFR-A 124 (493)
T ss_dssp EEEEEETTSGGGTBSHHHHHHHHHHHHHHHHHT-EEEEEEEE-----ESSBCGGGGGHHH--------HHHHHHHHHH-H
T ss_pred EEEEeccceecCCCCcccceeeehHHHHHHHcC-CCcEEecc-----ccccccccchhhh--------hhhhhHHHHH-H
Confidence 333333333667899999999999999988764 45555554 5555 3333221 1122223333 3
Q ss_pred HHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC-ceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCC
Q 024298 130 VYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLN 208 (269)
Q Consensus 130 ~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~ 208 (269)
+.++.. ..|+|+++.|+|.|||..++..||++|+.++ +.+++... ..+. ..+|+.++
T Consensus 125 ~~~~~~-~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i~l~GP-----------~vv~----------~~~Ge~~~ 182 (493)
T PF01039_consen 125 IARLSG-GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARIFLAGP-----------RVVE----------SATGEEVD 182 (493)
T ss_dssp HHHHHT-TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEEESSTH-----------HHHH----------HHHSSCTS
T ss_pred HHHHhc-CCCeEEEEccccccchhhcccccCccccCccceEEEeccc-----------cccc----------cccCcccc
Confidence 344556 9999999999999999999999999999997 87776421 1111 13568888
Q ss_pred HHHH-------HhcCccceeccCCh
Q 024298 209 GVEM-------IACGLATHYTLNGV 226 (269)
Q Consensus 209 a~eA-------~~~GLv~~vv~~~~ 226 (269)
.++. ...|.+|.++++++
T Consensus 183 ~~~lgG~~~h~~~sG~~d~v~~de~ 207 (493)
T PF01039_consen 183 SEELGGADVHAAKSGVVDYVVDDEE 207 (493)
T ss_dssp HHHHHBHHHHHHTSSSSSEEESSHH
T ss_pred chhhhhhhhhcccCCCceEEEechH
Confidence 7764 47899999998765
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >PRK10949 protease 4; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00051 Score=67.64 Aligned_cols=86 Identities=10% Similarity=-0.027 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchh
Q 024298 68 SMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGI 147 (269)
Q Consensus 68 ~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~ 147 (269)
-.+.++.++++.+.+|+.|++|||.-.+.. |..... .+.+.+.+..+....||+||.-+.+
T Consensus 95 ~~l~div~~i~~Aa~D~rIkgivL~i~s~g---G~~~a~----------------~~eI~~ai~~fk~sGKpVvA~~~~~ 155 (618)
T PRK10949 95 NSLFDIVNTIRQAKDDRNITGIVLDLKNFA---GADQPS----------------MQYIGKALREFRDSGKPVYAVGDSY 155 (618)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEEEeCCCC---CccHHH----------------HHHHHHHHHHHHHhCCeEEEEecCc
Confidence 445689999999999999999999976321 222211 1233344455566789999864444
Q ss_pred cchhhHHHHHhCCEEEEeCCceEecC
Q 024298 148 TMGCGAGISLQGMYRVVTDKTVFSNP 173 (269)
Q Consensus 148 a~GgG~~Lal~cD~~ia~~~a~f~~p 173 (269)
.-+++.|+.+||.+++.+.+.+++.
T Consensus 156 -~s~~YyLASaAD~I~l~P~G~v~~~ 180 (618)
T PRK10949 156 -SQGQYYLASFANKIYLSPQGVVDLH 180 (618)
T ss_pred -cchhhhhhhhCCEEEECCCceEEEe
Confidence 4678999999999999998777654
|
|
| >COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0018 Score=60.31 Aligned_cols=148 Identities=15% Similarity=0.126 Sum_probs=107.1
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHH
Q 024298 48 RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLY 127 (269)
Q Consensus 48 ~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~ 127 (269)
++.|..|.++ +.+++...+.+.+.++.++++.. .+|||.=.- - -...+...
T Consensus 25 ~~~v~vi~i~-----g~I~~~s~~~l~r~l~~A~~~~a-~~vvl~ldT----P-------------------GGl~~sm~ 75 (436)
T COG1030 25 EKKVYVIEID-----GAIDPASADYLQRALQSAEEENA-AAVVLELDT----P-------------------GGLLDSMR 75 (436)
T ss_pred CCeEEEEEec-----CccCHHHHHHHHHHHHHHHhCCC-cEEEEEecC----C-------------------CchHHHHH
Confidence 5568888885 56999999999999999987653 344443210 0 11234566
Q ss_pred HHHHHHccCCCcEEEEEc---hhcchhhHHHHHhCCEEEEeCCceEecCcccccc---cCCCc-hHHH------HHhhhh
Q 024298 128 QFVYLQGTFVKPHVAILD---GITMGCGAGISLQGMYRVVTDKTVFSNPETQMGF---HPDAG-ASFY------LSHLPG 194 (269)
Q Consensus 128 ~l~~~i~~~~kp~Iaav~---G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl---~p~~g-~~~~------l~r~~g 194 (269)
++.+.+.+.|.|++..|. ++|..+|..++++||+..+++.+.++-...-.+- .+... .... +.+.-|
T Consensus 76 ~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPgT~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~A~~~g 155 (436)
T COG1030 76 QIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPGTNIGAATPIAGGGTSAKEANTTNAAVAYIRSLAEERG 155 (436)
T ss_pred HHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCCCcccccceecCCCCCccchhhHHHHHHHHHHHHHHcC
Confidence 688899999999999885 4699999999999999999999988875543222 11111 1111 223334
Q ss_pred HH---HHHHhccCCCCCHHHHHhcCccceeccC
Q 024298 195 YL---GEYLALTGEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 195 ~~---a~~l~ltG~~i~a~eA~~~GLv~~vv~~ 224 (269)
+. |.+++.....++++||.+.|++|-+..+
T Consensus 156 RN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~ 188 (436)
T COG1030 156 RNPTWAERFVTENLSLTAEEALRQGVIDLIARD 188 (436)
T ss_pred CChHHHHHHhhhccCCChhHHHhcCccccccCC
Confidence 42 5888899999999999999999999765
|
|
| >PRK12552 ATP-dependent Clp protease-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0025 Score=54.75 Aligned_cols=144 Identities=14% Similarity=0.054 Sum_probs=92.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCc--eEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcE
Q 024298 63 NALNTSMVGRLKRLYESWEENPDI--GFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPH 140 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v--~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~ 140 (269)
-..+.++.+.+...|-.++.++.. =-+-|.|.|....+|-=+... .....++..+...+-+|
T Consensus 47 ~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v----------------~~glaIyD~m~~ik~~V 110 (222)
T PRK12552 47 RQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFE----------------TEAFAICDTMRYIKPPV 110 (222)
T ss_pred cchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCcccccccccc----------------ccHHHHHHHHHhcCCCe
Confidence 345566888888888888654321 235556666554444111111 11122444556677789
Q ss_pred EEEEchhcchhhHHHHHhCCE--EEEeCCceEecCcccccccCCCchHHHH------------------HhhhhHH---H
Q 024298 141 VAILDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGASFYL------------------SHLPGYL---G 197 (269)
Q Consensus 141 Iaav~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~~l------------------~r~~g~~---a 197 (269)
...+-|.|.+.+.-|++++|- |++.+++++-+-....|. .|.+.-+ ....|.. -
T Consensus 111 ~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~---~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I 187 (222)
T PRK12552 111 HTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGA---RGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKL 187 (222)
T ss_pred EEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCccc---ccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999996 889999999887665443 1222111 1122321 1
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCC
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNG 225 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~ 225 (269)
.+.+-.-.-++|+||+++||||+|+.+.
T Consensus 188 ~~d~~rd~wmsA~EA~eyGliD~Ii~~~ 215 (222)
T PRK12552 188 SKDTDRMFYLTPQEAKEYGLIDRVLESR 215 (222)
T ss_pred HHHhcCCCcCCHHHHHHcCCCcEEeccC
Confidence 3344445679999999999999999764
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0059 Score=58.99 Aligned_cols=158 Identities=13% Similarity=0.060 Sum_probs=98.0
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHH
Q 024298 54 AILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYL 132 (269)
Q Consensus 54 I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (269)
|.=|+|. ...+++.+..+...+.++.+.+. .+-+|.|.-.+. |..|.+-+ .....+...+++..
T Consensus 319 vvAnd~~~~~G~~~~~~~~K~~r~i~~a~~~-~lPlV~lvDs~G-~~~g~~~E-------------~~g~~~~~a~~~~a 383 (512)
T TIGR01117 319 IIANQPKVMAGCLDIDSSDKIARFIRFCDAF-NIPIVTFVDVPG-FLPGVNQE-------------YGGIIRHGAKVLYA 383 (512)
T ss_pred EEEeccccccCCCCHHHHHHHHHHHHHHHHc-CCCEEEEEeCcC-ccccHHHH-------------HHHHHHHHHHHHHH
Confidence 3444543 34569999999999999988754 455555554333 44443221 12334455567777
Q ss_pred HccCCCcEEEEEchhcchhhHHHHH----hCCEEEEeCCceEecCcccccccCCCchHHHHHh-hhh----HH-H-HH-H
Q 024298 133 QGTFVKPHVAILDGITMGCGAGISL----QGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSH-LPG----YL-G-EY-L 200 (269)
Q Consensus 133 i~~~~kp~Iaav~G~a~GgG~~Lal----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r-~~g----~~-a-~~-l 200 (269)
+....+|.|+.|-|.+.|||+.-+. .+|++++.++++++. .++-++...+.+ -+. .. + .+ +
T Consensus 384 ~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~a~~~v-------~~pe~a~~i~~~~~l~~~~~~~~~~~~~~ 456 (512)
T TIGR01117 384 YSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPTAEIAV-------MGPAGAANIIFRKDIKEAKDPAATRKQKI 456 (512)
T ss_pred HHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCCCeEee-------cCHHHHHHHHhhhhcccccCHHHHHHHHH
Confidence 8889999999999999888654433 289999988877665 322222222211 110 00 1 11 1
Q ss_pred -hccCCCCCHHHHHhcCccceeccCChHHHHHHH
Q 024298 201 -ALTGEKLNGVEMIACGLATHYTLNGVRYTALYF 233 (269)
Q Consensus 201 -~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~ 233 (269)
-+.-+..++..+.+.|+||.|+++.+.-+..-+
T Consensus 457 ~~~~~~~~~~~~~a~~g~vD~VI~P~~tR~~l~~ 490 (512)
T TIGR01117 457 AEYREEFANPYKAAARGYVDDVIEPKQTRPKIVN 490 (512)
T ss_pred HHHHHhhcCHHHHHhcCCCCeeEChHHHHHHHHH
Confidence 112234578899999999999999998765333
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.018 Score=50.58 Aligned_cols=198 Identities=12% Similarity=0.060 Sum_probs=122.6
Q ss_pred cchhHHHhhhccceE-eeceecCccccccC---CCC----CCCccccCcEEEEE---eC-CEEEEEEcCCCCCCCCCHHH
Q 024298 2 QRIKSLLRIKHSFKQ-VAFVSHQQRSFSAL---PDY----SSNDYLQDQVLVEG---RA-KSRAAILNRPSNLNALNTSM 69 (269)
Q Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~----~~~~~~~~~v~~~~---~~-~v~~I~ln~p~~~Nal~~~~ 69 (269)
+|++.|++--.+-.. ..+.+--|..|... .+. .......+.|..-. ++ .+....++-.--.-++..-.
T Consensus 63 ~Ri~~llD~gsf~el~~~l~~~dPL~F~d~k~Y~~rL~~a~~~tg~~davvtg~g~i~G~pvv~av~df~FmgGSmGsVv 142 (294)
T COG0777 63 ERLEALLDEGSFEELDSPLEPKDPLKFPDSKKYKDRLEAARKKTGLDDAVVTGEGTINGLPVVLAVMDFAFMGGSMGSVV 142 (294)
T ss_pred HHHHHhhCCCcceecccCCCcCCcccCCcchhhHHHHHHHHhhcCCCcceEEEeeEECCeEEEEEEEeccccccchhHHH
Confidence 466666665544443 33455455444321 111 11111344444332 22 25556666666678899888
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcc
Q 024298 70 VGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITM 149 (269)
Q Consensus 70 ~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~ 149 (269)
=+.+..+++.+-++. +.+|+++.. .|+-..|-.- .-.........+.++..-..|.|+.+..+..
T Consensus 143 Geki~ra~E~A~e~k-~P~v~f~aS-----GGARMQEg~l---------SLMQMaktsaAl~~l~ea~lpyIsVLt~PTt 207 (294)
T COG0777 143 GEKITRAIERAIEDK-LPLVLFSAS-----GGARMQEGIL---------SLMQMAKTSAALKRLSEAGLPYISVLTDPTT 207 (294)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEecC-----cchhHhHHHH---------HHHHHHHHHHHHHHHHhcCCceEEEecCCCc
Confidence 999999999987654 688888874 4444433110 1112234455667788899999999999998
Q ss_pred hhh-HHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCHHHHHhcCccceeccCChHH
Q 024298 150 GCG-AGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGVRY 228 (269)
Q Consensus 150 GgG-~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~ 228 (269)
||= .++++..|+.||.++|.++|...+ .+-+...+-+-.| --+++-.++.|+||.||+..++-
T Consensus 208 GGVsASfA~lGDi~iAEP~AlIGFAGpR---------------VIEQTire~LPeg-fQ~aEfLlehG~iD~iv~R~elr 271 (294)
T COG0777 208 GGVSASFAMLGDIIIAEPGALIGFAGPR---------------VIEQTIREKLPEG-FQTAEFLLEHGMIDMIVHRDELR 271 (294)
T ss_pred cchhHhHHhccCeeecCcccccccCcch---------------hhhhhhcccCCcc-hhhHHHHHHcCCceeeecHHHHH
Confidence 775 479999999999999888876433 1111111111111 22466678999999999998888
Q ss_pred HH
Q 024298 229 TA 230 (269)
Q Consensus 229 ~~ 230 (269)
+.
T Consensus 272 ~t 273 (294)
T COG0777 272 TT 273 (294)
T ss_pred HH
Confidence 76
|
|
| >COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0018 Score=57.11 Aligned_cols=92 Identities=13% Similarity=0.108 Sum_probs=67.9
Q ss_pred HHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhcc
Q 024298 124 ETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALT 203 (269)
Q Consensus 124 ~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~lt 203 (269)
+.+..-+..+.++++|+||.|=|---+||.-=...+|.+.+-++++++. +.|.++++.++..--. +.+. -.
T Consensus 175 eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~mle~s~ySV------isPEG~AsILWkD~~k--a~eA-Ae 245 (317)
T COG0825 175 EAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLMLENSTYSV------ISPEGCASILWKDASK--AKEA-AE 245 (317)
T ss_pred HHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHHHhceeee------cChhhhhhhhhcChhh--hHHH-HH
Confidence 3444455567889999999999997777776666779999999999885 5677766654443322 2222 23
Q ss_pred CCCCCHHHHHhcCccceeccC
Q 024298 204 GEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 204 G~~i~a~eA~~~GLv~~vv~~ 224 (269)
-..|+|++.+++|+||.|+|.
T Consensus 246 ~mkita~dLk~lgiID~II~E 266 (317)
T COG0825 246 AMKITAHDLKELGIIDGIIPE 266 (317)
T ss_pred HcCCCHHHHHhCCCcceeccC
Confidence 368999999999999999986
|
|
| >TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.01 Score=57.30 Aligned_cols=140 Identities=11% Similarity=0.130 Sum_probs=84.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (269)
|..+-.+..-+.-+++....+.+..+++.+.++. +-+|.+.- |.|..+.+-.. ....+.+.+....
T Consensus 84 v~v~a~D~t~~gGS~g~~~~~K~~r~~e~A~~~~-lPlV~l~d-----SgGarm~eg~~--------~l~~~~~~~~~~~ 149 (512)
T TIGR01117 84 VYAFAQDFTVMGGSLGEMHAAKIVKIMDLAMKMG-APVVGLND-----SGGARIQEAVD--------ALKGYGDIFYRNT 149 (512)
T ss_pred EEEEEECCcccccCCCHHHHHHHHHHHHHHHHcC-CCEEEEec-----CCCCCccccch--------hhhhHHHHHHHHH
Confidence 3333433333678899999999999999987765 45555554 33443322100 0011112222221
Q ss_pred HHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC-ceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCH
Q 024298 131 YLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNG 209 (269)
Q Consensus 131 ~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a 209 (269)
. ..-..|.|+++.|+|.||+......||++|+.++ +++.+. |...+.. .+|+.+++
T Consensus 150 -~-~s~~iP~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~~a-----------GP~vv~~----------~~Ge~v~~ 206 (512)
T TIGR01117 150 -I-ASGVVPQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMFIT-----------GPQVIKT----------VTGEEVTA 206 (512)
T ss_pred -H-HcCCCcEEEEEecCCCcHHHHHHHhcCceEEeccceEEEec-----------ChHHHHh----------hcCcccch
Confidence 1 2335899999999999999888889999999996 345542 1111122 24555555
Q ss_pred HHH-----H--hcCccceeccCChH
Q 024298 210 VEM-----I--ACGLATHYTLNGVR 227 (269)
Q Consensus 210 ~eA-----~--~~GLv~~vv~~~~l 227 (269)
+|. + .-|.+|.++++++-
T Consensus 207 e~lGGa~~h~~~sGv~d~~~~de~e 231 (512)
T TIGR01117 207 EQLGGAMAHNSVSGVAHFIAEDDDD 231 (512)
T ss_pred hhcchHHHhccccceeEEecCChHH
Confidence 554 2 57999999876543
|
This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. |
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.029 Score=54.88 Aligned_cols=147 Identities=15% Similarity=0.191 Sum_probs=87.4
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAKSRAAILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~v~~I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
+|.-..|.-|++. +..+++....+.+.++++.+.+.. +-+|.|.-. .|..+.+ + .........+.+.+
T Consensus 127 ~Gr~V~v~a~D~tv~GGs~g~~~~~Ki~r~~elA~~~~-lPlV~l~DS-----gGarl~~--q---~e~~~~~~~~g~if 195 (569)
T PLN02820 127 HGRLCMFVANDPTVKGGTYYPITVKKHLRAQEIAAQCR-LPCIYLVDS-----GGANLPR--Q---AEVFPDRDHFGRIF 195 (569)
T ss_pred CCEEEEEEEECCCccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEeC-----CCcCCcc--c---ccccchHhHHHHHH
Confidence 3333333444443 678899999999999999987654 556666543 3333311 0 00000001111112
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeC-CceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCC
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTD-KTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGE 205 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~ 205 (269)
. -..++....+|.|+++.|+|.|||......||++|+++ ++++.+. |...+.. .+|+
T Consensus 196 ~-~~~~ls~~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~~a-----------GP~vV~~----------~~Ge 253 (569)
T PLN02820 196 Y-NQARMSSAGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIFLA-----------GPPLVKA----------ATGE 253 (569)
T ss_pred H-HHHHHhCCCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEEec-----------CHHHHHh----------hcCc
Confidence 2 22235567799999999999999999999999999987 4555542 1111111 2455
Q ss_pred CCCHHHH-----H--hcCccceeccCChH
Q 024298 206 KLNGVEM-----I--ACGLATHYTLNGVR 227 (269)
Q Consensus 206 ~i~a~eA-----~--~~GLv~~vv~~~~l 227 (269)
.++++|. + .-|.+|.+++++.-
T Consensus 254 ~v~~eeLGGa~~h~~~sGv~d~~~~de~~ 282 (569)
T PLN02820 254 EVSAEDLGGADVHCKVSGVSDHFAQDELH 282 (569)
T ss_pred ccCHHHhCCHHHhcccccccccccCchHH
Confidence 5666554 2 36888888776543
|
|
| >PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.1 Score=50.42 Aligned_cols=159 Identities=12% Similarity=0.044 Sum_probs=94.7
Q ss_pred EEEcCCCCCC-CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHH
Q 024298 54 AILNRPSNLN-ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYL 132 (269)
Q Consensus 54 I~ln~p~~~N-al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (269)
|.-|+|.... +++.+-.....+.++..+. ..+-+|.|.-. ..|..|. ..+.....+...+++.+
T Consensus 298 iian~~~~~~G~~~~~~a~K~arfi~lcd~-~~iPlv~l~dt-pGf~~g~-------------~~E~~g~~~~ga~~~~a 362 (493)
T PF01039_consen 298 IIANNPRQRAGALDPDGARKAARFIRLCDA-FNIPLVTLVDT-PGFMPGP-------------EAERAGIIRAGARLLYA 362 (493)
T ss_dssp EEEE-TTCGGGEB-HHHHHHHHHHHHHHHH-TT--EEEEEEE-CEB--SH-------------HHHHTTHHHHHHHHHHH
T ss_pred EEEeccccccccCChHHHHHHHHHHHHHHh-hCCceEEEeec-ccccccc-------------hhhhcchHHHHHHHHHH
Confidence 4555664222 6999999999999988876 44666666643 2343332 12224456677778889
Q ss_pred HccCCCcEEEEEchhcchhhHHHHHhC----CEEEEeCCceEecCcccccccCCCchHHHHHhhhh---------HHH--
Q 024298 133 QGTFVKPHVAILDGITMGCGAGISLQG----MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG---------YLG-- 197 (269)
Q Consensus 133 i~~~~kp~Iaav~G~a~GgG~~Lal~c----D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g---------~~a-- 197 (269)
+..+..|+|..|-|.+.|+|..-+... |+++|.++++++. .++-++...+.+.-- ..+
T Consensus 363 ~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~a~~~v-------m~~e~a~~i~~~~~~~~~~~~~~~~~~~~ 435 (493)
T PF01039_consen 363 LAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPTAEIGV-------MGPEGAASILYRDELEAAEAEGADPEAQR 435 (493)
T ss_dssp HHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT-EEES-------S-HHHHHHHHTHHHHHHSCHCCHSHHHHH
T ss_pred HHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhcceeee-------cChhhhheeeehhhhhhhhcccchhHHHH
Confidence 999999999999999999887554444 7887777766654 333333332222110 000
Q ss_pred HHHh--ccCCCCCHHHHHhcCccceeccCChHHHHHHHh
Q 024298 198 EYLA--LTGEKLNGVEMIACGLATHYTLNGVRYTALYFT 234 (269)
Q Consensus 198 ~~l~--ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~ 234 (269)
.+.+ ..-+.-++..+...|++|.|+++.+.-...-.+
T Consensus 436 ~~~~~~~~~~~~~~~~~a~~~~~D~ii~p~~tR~~l~~~ 474 (493)
T PF01039_consen 436 AEKIAEYEDELSSPYRAASRGYVDDIIDPAETRKVLIAA 474 (493)
T ss_dssp HHHHHHHHHHHSSHHHHHHTTSSSEESSGGGHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHhcCCCCCccCHHHHHHHHHHH
Confidence 1111 111235788999999999999999987764433
|
The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F .... |
| >COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.059 Score=51.78 Aligned_cols=104 Identities=13% Similarity=0.070 Sum_probs=66.2
Q ss_pred EEEEEcC-CCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHH
Q 024298 52 RAAILNR-PSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (269)
Q Consensus 52 ~~I~ln~-p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (269)
..+..|. +-+.-++..-..+.+..+.+.+.++..-.+.+.. |.|+.+.+=. .....+-+-++ -.
T Consensus 93 ~~v~a~D~TV~gGt~~~~~~~Ki~r~~~~A~~~g~P~i~l~d------sgGari~~~v--------~~l~g~g~iF~-~~ 157 (526)
T COG4799 93 VFVFANDFTVKGGTLGEMTAKKILRAQELAIENGLPVIGLND------SGGARIQEGV--------PSLAGYGRIFY-RN 157 (526)
T ss_pred EEEEEecCceecccccccccchHHHHHHHHHHcCCCEEEEEc------ccccccccCc--------cccccchHHHH-HH
Confidence 3344444 3367778887888888888888776543444444 3444443211 11111112222 22
Q ss_pred HHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC-ceEe
Q 024298 131 YLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFS 171 (269)
Q Consensus 131 ~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~-a~f~ 171 (269)
.++... +|.|++|.|.|.|||..+...||++|+.++ +++.
T Consensus 158 a~~Sg~-IPqIsvv~G~c~gGgaY~pal~D~~imv~~~~~mf 198 (526)
T COG4799 158 ARASGV-IPQISVVMGPCAGGGAYSPALTDFVIMVRDQSYMF 198 (526)
T ss_pred HHhccC-CCEEEEEEecCcccccccccccceEEEEcCCccEE
Confidence 234555 999999999999999999999999999997 4443
|
|
| >KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.17 Score=44.15 Aligned_cols=133 Identities=12% Similarity=0.039 Sum_probs=77.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEE
Q 024298 63 NALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Ia 142 (269)
-.+|.++-+.+...|-.++.+++-|=|.+.=. |.|.++.. ...++..+..+.-||-.
T Consensus 99 ~~Idd~va~~viaqlL~Ld~ed~~K~I~lyIN----SPGG~vta-------------------glAIYDtMq~ik~~V~T 155 (275)
T KOG0840|consen 99 QPIDDDVANLVIAQLLYLDSEDPKKPIYLYIN----SPGGSVTA-------------------GLAIYDTMQYIKPDVST 155 (275)
T ss_pred CcCcHHHHHHHHHHHHHhhccCCCCCeEEEEe----CCCCccch-------------------hhhHHHHHHhhCCCcee
Confidence 34888888888888888887666666665543 44444421 11133344456666666
Q ss_pred EEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHH--------HHHhhh--------------hHHH---
Q 024298 143 ILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASF--------YLSHLP--------------GYLG--- 197 (269)
Q Consensus 143 av~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~--------~l~r~~--------------g~~a--- 197 (269)
.+=|.|.+-|.-|..+ .+.+-++++|..++=+.-+.|+.. ...+++ |+..
T Consensus 156 ic~G~Aas~aalLLaa-----G~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i 230 (275)
T KOG0840|consen 156 ICVGLAASMAALLLAA-----GAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVI 230 (275)
T ss_pred eehhhHHhHHHHHHhc-----CCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 6668877766554443 245667777777766643333221 011111 1100
Q ss_pred HHHhccCCCCCHHHHHhcCccceecc
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTL 223 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~ 223 (269)
.+-+-.-+.++|+||++.||||.|++
T Consensus 231 ~~d~dRd~fmsa~EA~eyGliD~v~~ 256 (275)
T KOG0840|consen 231 EKDMDRDRFMSAEEAKEYGLIDKVID 256 (275)
T ss_pred HhhhcccccCCHHHHHHhcchhhhhc
Confidence 11112235689999999999999987
|
|
| >PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.4 Score=43.25 Aligned_cols=146 Identities=13% Similarity=0.039 Sum_probs=93.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEE
Q 024298 63 NALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Ia 142 (269)
-.++.+-.....+.++.++. -.+-+|-|.-. ..|..|.+-+. ....+...+++..+....+|.|+
T Consensus 380 g~l~~~~a~Kaarfi~lc~~-~~iPlv~l~D~-pGf~~G~~~E~-------------~G~~~~~a~l~~A~a~~~VP~is 444 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ-RGIPLLFLQNI-TGFMVGSRSEA-------------SGIAKAGAKMVMAVACAKVPKIT 444 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh-cCCCEEEEEEC-CCCCCCHHHHH-------------hhHHHHHHHHHHHHHhCCCCEEE
Confidence 45778888888888887765 34555555543 22545443322 34566777888889999999999
Q ss_pred EEchhcchhhHHHHH----hCCEEEEeCCceEecCcccccccCCCchHHHHHhh-h------------hHH-H-HHH--h
Q 024298 143 ILDGITMGCGAGISL----QGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHL-P------------GYL-G-EYL--A 201 (269)
Q Consensus 143 av~G~a~GgG~~Lal----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~------------g~~-a-~~l--~ 201 (269)
.|-|.|+|+|..-+. ..|++++.+++ .+|+.++-++...+.+. + -.. + ++. -
T Consensus 445 vi~g~a~G~g~~aM~g~~~~~d~~~awp~A-------~i~vmg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (569)
T PLN02820 445 IIVGGSFGAGNYGMCGRAYSPNFLFMWPNA-------RIGVMGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAKTVE 517 (569)
T ss_pred EEECCcchHHHHHhcCcCCCCCEEEECCCC-------eEEecCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHHHHH
Confidence 999999998875443 45666666554 55565555555444331 1 001 1 110 1
Q ss_pred ccCCCCCHHHHHhcCccceeccCChHHHH
Q 024298 202 LTGEKLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
..-+..++..+-+.|+||.|+++.+.-..
T Consensus 518 ~~~~~~~p~~aa~~~~vD~VIdP~dTR~~ 546 (569)
T PLN02820 518 AYEREANPYYSTARLWDDGVIDPADTRRV 546 (569)
T ss_pred HHHHhCCHHHHHHcCCcCcccCHHHHHHH
Confidence 11234577788899999999999887655
|
|
| >KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.77 E-value=13 Score=35.22 Aligned_cols=150 Identities=13% Similarity=0.079 Sum_probs=95.8
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHH
Q 024298 54 AILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYL 132 (269)
Q Consensus 54 I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (269)
|.-|+|+ ..-.|..+.-..-.+.++...+ ..+-.|.+..-+. |-.|.+.+. ..+.+.-..++..
T Consensus 353 Ivgnn~kf~~G~L~s~sa~KgarfIe~c~q-~~IPLi~l~ni~G-fm~g~~~e~-------------~gIaK~gAklv~a 417 (536)
T KOG0540|consen 353 IVGNNPKFAGGVLFSESAVKGARFIELCDQ-RNIPLIFLQNITG-FMVGRAAEA-------------GGIAKHGAKLVYA 417 (536)
T ss_pred EeccCchhcccccchhhhhhhHHHHHHHHh-cCCcEEEEEccCC-ccccchhhh-------------hchhhhhhhhhhh
Confidence 4555654 3345666666666666665544 3466666665544 777776643 3344555667788
Q ss_pred HccCCCcEEEEEchhcchhhHH---HHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhh-----hhH--HHHHHhc
Q 024298 133 QGTFVKPHVAILDGITMGCGAG---ISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHL-----PGY--LGEYLAL 202 (269)
Q Consensus 133 i~~~~kp~Iaav~G~a~GgG~~---Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-----~g~--~a~~l~l 202 (269)
...-..|-|..+.|.+.||-.. -.+.-|+.++.+.+++++-..+ ++.-.+.+. ... ...|.+
T Consensus 418 ~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~A~IavmG~~-------~a~~Vi~q~~~e~a~~~~~~~~E~f- 489 (536)
T KOG0540|consen 418 VACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPNARIAVMGGK-------QAANVIFQITLEKAVALKAPYIEKF- 489 (536)
T ss_pred hhhccCceEEEEecCccCCcccccccccCCceeEEcccceeeecccc-------chhhhhhhhhhhhhhhhcchHHHHh-
Confidence 8889999999999999996654 5677789999988888765332 111122222 222 223333
Q ss_pred cCCCCCHHHHHhcCccceeccCChHHHH
Q 024298 203 TGEKLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 203 tG~~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
|.|+. |...||+|.|+++.+.-..
T Consensus 490 -~npy~---a~~Rg~~D~II~p~~tR~v 513 (536)
T KOG0540|consen 490 -GNPYY---AAARGWDDGIIDPSDTRKV 513 (536)
T ss_pred -cCccH---HHHhhccccccChhHhhHH
Confidence 77766 4578999999999887654
|
|
| >COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=80.42 E-value=5.8 Score=35.34 Aligned_cols=53 Identities=25% Similarity=0.400 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcc
Q 024298 73 LKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITM 149 (269)
Q Consensus 73 L~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~ 149 (269)
+.++|+.+++||+.++||+-|+ -|.+-++ ...+ ++.. ....||+|+.+-|.+.
T Consensus 188 fid~L~~fe~Dp~T~~ivmiGE-----iGG~aEe-----------~AA~-------~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 188 FIDALEMFEADPETEAIVMIGE-----IGGPAEE-----------EAAE-------YIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred HHHHHHHHhcCccccEEEEEec-----CCCcHHH-----------HHHH-------HHHH-hccCCCEEEEEeccCC
Confidence 4578889999999999999986 2222221 1122 2223 3345999999999876
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 269 | ||||
| 3bpt_A | 363 | Crystal Structure Of Human Beta-Hydroxyisobutyryl-C | 1e-31 | ||
| 4hdt_A | 353 | Crystal Structure Of A Carnitinyl-Coa Dehydratase F | 3e-25 | ||
| 3ju1_A | 407 | Crystal Structure Of Enoyl-Coa HydrataseISOMERASE F | 1e-21 | ||
| 4j2u_A | 365 | Crystal Structure Of An Enoyl-coa Hydratase From Rh | 2e-21 | ||
| 3pzk_A | 257 | Crystal Structure Of The Mycobacterium Tuberculosis | 1e-14 | ||
| 3q0j_A | 258 | Crystal Structure Of The Mycobacterium Tuberculosis | 1e-14 | ||
| 3h81_A | 278 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 2e-14 | ||
| 3rsi_A | 265 | The Structure Of A Putative Enoyl-Coa HydrataseISOM | 7e-14 | ||
| 3hrx_A | 254 | Crystal Structure Of Phenylacetic Acid Degradation | 4e-13 | ||
| 3p5m_A | 255 | Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS | 1e-12 | ||
| 1ey3_A | 258 | Structure Of Enoyl-Coa Hydratase Complexed With The | 3e-12 | ||
| 1mj3_A | 260 | Crystal Structure Analysis Of Rat Enoyl-Coa Hydrata | 3e-12 | ||
| 1dub_A | 261 | 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph | 4e-12 | ||
| 3qmj_A | 256 | Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 Fr | 7e-12 | ||
| 2hw5_A | 286 | The Crystal Structure Of Human Enoyl-Coenzyme A (Co | 9e-12 | ||
| 4f47_A | 278 | The Structure Of Enoyl-Coa Hydratase Echa19 From My | 2e-11 | ||
| 3rrv_A | 276 | Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS | 2e-11 | ||
| 3r9t_A | 267 | Structure Of Echa1_1 From Mycobacterium Paratubercu | 6e-11 | ||
| 3r0o_A | 273 | Crystal Structure Of Carnitinyl-Coa Hydratase From | 6e-11 | ||
| 2pbp_A | 258 | Crystal Structure Of Enoyl-Coa Hydrates Subunit I ( | 6e-11 | ||
| 3r9s_A | 267 | Structure Of A Carnitinyl-Coa Dehydratase From Myco | 7e-11 | ||
| 2ej5_A | 257 | Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydr | 2e-10 | ||
| 3tlf_A | 274 | Crystal Structure Of An Enoyl-Coa HydrataseISOMERAS | 2e-10 | ||
| 3qxz_A | 265 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 2e-10 | ||
| 3moy_A | 263 | Crystal Structure Of Probable Enoyl-Coa Hydratase F | 5e-10 | ||
| 2f6q_A | 280 | The Crystal Structure Of Human Peroxisomal Delta3, | 7e-10 | ||
| 4fzw_A | 258 | Crystal Structure Of The Paaf-paag Hydratase-isomer | 1e-09 | ||
| 1uiy_A | 253 | Crystal Structure Of Enoyl-Coa Hydratase From Therm | 2e-08 | ||
| 3fdu_A | 266 | Crystal Structure Of A Putative Enoyl-Coa Hydratase | 2e-08 | ||
| 2vsu_A | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 5e-08 | ||
| 3qyr_A | 253 | Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 M | 5e-08 | ||
| 2vsu_F | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 5e-08 | ||
| 2vsu_C | 275 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 5e-08 | ||
| 3p85_A | 270 | Crystal Structure Enoyl-Coa Hydratase From Mycobact | 5e-08 | ||
| 2j5i_I | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 6e-08 | ||
| 2j5i_B | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 6e-08 | ||
| 2vss_F | 276 | Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C | 6e-08 | ||
| 2vsu_E | 276 | A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase | 6e-08 | ||
| 2vss_E | 276 | Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In C | 8e-08 | ||
| 1dci_A | 275 | Dienoyl-Coa Isomerase Length = 275 | 1e-07 | ||
| 2j5i_A | 276 | Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase | 2e-07 | ||
| 3trr_A | 256 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 2e-07 | ||
| 2vre_A | 296 | Crystal Structure Of Human Peroxisomal Delta3,5, De | 5e-07 | ||
| 3qk8_A | 272 | Crystal Structure Of Enoyl-Coa Hydratase Echa15 Fro | 7e-07 | ||
| 3kqf_A | 265 | 1.8 Angstrom Resolution Crystal Structure Of Enoyl- | 2e-06 | ||
| 3oc7_A | 267 | Crystal Structure Of An Enoyl-Coa Hydratase From My | 5e-06 | ||
| 3he2_A | 264 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 5e-06 | ||
| 1nzy_B | 269 | 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo | 1e-05 | ||
| 1nzy_A | 269 | 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudo | 1e-05 | ||
| 3myb_A | 286 | Crystal Structure Of Enoyl-Coa Hydratase Mycobacter | 1e-05 | ||
| 3pea_A | 261 | Crystal Structure Of Enoyl-Coa Hydratase From Bacil | 2e-05 | ||
| 2vx2_A | 287 | Crystal Structure Of Human Enoyl Coenzyme A Hydrata | 2e-05 | ||
| 2a7k_A | 250 | Carboxymethylproline Synthase (carb) From Pectobact | 2e-05 | ||
| 3sll_A | 290 | Crystal Structure Of A Probable Enoyl-Coa Hydratase | 2e-05 | ||
| 3qxi_A | 265 | Crystal Structure Of Enoyl-Coa Hydratase Echa1 From | 3e-05 | ||
| 1jxz_A | 269 | Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coe | 3e-05 | ||
| 4fzw_C | 274 | Crystal Structure Of The Paaf-paag Hydratase-isomer | 3e-05 | ||
| 3pe8_A | 256 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 4e-05 | ||
| 3hin_A | 275 | Crystal Structure Of Putative Enoyl-Coa Hydratase F | 7e-05 | ||
| 3qka_A | 261 | Crystal Structure Of Enoyl-Coa Hydratase Echa5 From | 7e-05 | ||
| 1wdk_A | 715 | Fatty Acid Beta-Oxidation Multienzyme Complex From | 8e-05 | ||
| 2iex_A | 272 | Crystal Structure Of Dihydroxynapthoic Acid Synthet | 1e-04 | ||
| 4eml_A | 275 | Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoy | 2e-04 | ||
| 4els_A | 285 | Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Co | 2e-04 | ||
| 3t88_A | 289 | Crystal Structure Of Escherichia Coli Menb In Compl | 2e-04 | ||
| 1hno_A | 280 | Crystal Structure Of Peroxisomal Delta3-delta2-enoy | 3e-04 | ||
| 3q1t_A | 278 | Crystal Structure Of Enoyl-Coa Hydratase From Mycob | 7e-04 | ||
| 3qre_A | 298 | Crystal Structure Of An Enoyl-Coa Hydratase Echa12_ | 8e-04 | ||
| 1rjm_A | 339 | Crystal Structure Of Menb (rv0548c) From Mycobacter | 8e-04 | ||
| 1q51_A | 314 | Crystal Structure Of Mycobacterium Tuberculosis Men | 9e-04 |
| >pdb|3BPT|A Chain A, Crystal Structure Of Human Beta-Hydroxyisobutyryl-Coa Hydrolase In Complex With Quercetin Length = 363 | Back alignment and structure |
|
| >pdb|4HDT|A Chain A, Crystal Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Thermoresistibile Length = 353 | Back alignment and structure |
|
| >pdb|3JU1|A Chain A, Crystal Structure Of Enoyl-Coa HydrataseISOMERASE FAMILY PROTEIN Length = 407 | Back alignment and structure |
|
| >pdb|4J2U|A Chain A, Crystal Structure Of An Enoyl-coa Hydratase From Rhodobacter Sphaeroides 2.4.1 Length = 365 | Back alignment and structure |
|
| >pdb|3PZK|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Apo Form Length = 257 | Back alignment and structure |
|
| >pdb|3Q0J|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Crotonase In Complex With The Inhibitor Acetoacetylcoa Length = 258 | Back alignment and structure |
|
| >pdb|3H81|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 278 | Back alignment and structure |
|
| >pdb|3RSI|A Chain A, The Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 265 | Back alignment and structure |
|
| >pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein Paag Length = 254 | Back alignment and structure |
|
| >pdb|3P5M|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Avium Length = 255 | Back alignment and structure |
|
| >pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The Substrate Dac-Coa Length = 258 | Back alignment and structure |
|
| >pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In Complex With Hexadienoyl-Coa Length = 260 | Back alignment and structure |
|
| >pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5 Length = 261 | Back alignment and structure |
|
| >pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From Mycobacterium Marinum Length = 256 | Back alignment and structure |
|
| >pdb|2HW5|A Chain A, The Crystal Structure Of Human Enoyl-Coenzyme A (Coa) Hydratase Short Chain 1, Echs1 Length = 286 | Back alignment and structure |
|
| >pdb|4F47|A Chain A, The Structure Of Enoyl-Coa Hydratase Echa19 From Mycobacterium Marinum Length = 278 | Back alignment and structure |
|
| >pdb|3RRV|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 276 | Back alignment and structure |
|
| >pdb|3R9T|A Chain A, Structure Of Echa1_1 From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 267 | Back alignment and structure |
|
| >pdb|3R0O|A Chain A, Crystal Structure Of Carnitinyl-Coa Hydratase From Mycobacterium Avium Length = 273 | Back alignment and structure |
|
| >pdb|2PBP|A Chain A, Crystal Structure Of Enoyl-Coa Hydrates Subunit I (Gk_2039) From Geobacillus Kaustophilus Hta426 Length = 258 | Back alignment and structure |
|
| >pdb|3R9S|A Chain A, Structure Of A Carnitinyl-Coa Dehydratase From Mycobacterium Avium 104 Length = 267 | Back alignment and structure |
|
| >pdb|2EJ5|A Chain A, Crystal Structure Of Gk2038 Protein (Enoyl-Coa Hydratase Subunit Ii) From Geobacillus Kaustophilus Length = 257 | Back alignment and structure |
|
| >pdb|3TLF|A Chain A, Crystal Structure Of An Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Paratuberculosis Length = 274 | Back alignment and structure |
|
| >pdb|3QXZ|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 265 | Back alignment and structure |
|
| >pdb|3MOY|A Chain A, Crystal Structure Of Probable Enoyl-Coa Hydratase From Mycob Smegmatis Length = 263 | Back alignment and structure |
|
| >pdb|2F6Q|A Chain A, The Crystal Structure Of Human Peroxisomal Delta3, Delta2 Enoyl Coa Isomerase (Peci) Length = 280 | Back alignment and structure |
|
| >pdb|4FZW|A Chain A, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 258 | Back alignment and structure |
|
| >pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus Thermophilus Hb8 Length = 253 | Back alignment and structure |
|
| >pdb|3FDU|A Chain A, Crystal Structure Of A Putative Enoyl-Coa HydrataseISOMERASE FROM Acinetobacter Baumannii Length = 266 | Back alignment and structure |
|
| >pdb|2VSU|A Chain A, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism. Length = 276 | Back alignment and structure |
|
| >pdb|3QYR|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa16_2 Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253 | Back alignment and structure |
|
| >pdb|2VSU|F Chain F, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|C Chain C, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 275 | Back alignment and structure |
|
| >pdb|3P85|A Chain A, Crystal Structure Enoyl-Coa Hydratase From Mycobacterium Avium Length = 270 | Back alignment and structure |
|
| >pdb|2J5I|I Chain I, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2J5I|B Chain B, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|2VSS|F Chain F, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276 | Back alignment and structure |
|
| >pdb|2VSU|E Chain E, A Ternary Complex Of Hydroxycinnamoyl-Coa Hydratase-Lyase ( Hchl) With Acetyl-Coenzyme A And Vanillin Gives Insights Into Substrate Specificity And Mechanism Length = 276 | Back alignment and structure |
|
| >pdb|2VSS|E Chain E, Wild-Type Hydroxycinnamoyl-Coa Hydratase Lyase In Complex With Acetyl-Coa And Vanillin Length = 276 | Back alignment and structure |
|
| >pdb|1DCI|A Chain A, Dienoyl-Coa Isomerase Length = 275 | Back alignment and structure |
|
| >pdb|2J5I|A Chain A, Crystal Structure Of Hydroxycinnamoyl-Coa Hydratase-Lyase Length = 276 | Back alignment and structure |
|
| >pdb|3TRR|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 256 | Back alignment and structure |
|
| >pdb|2VRE|A Chain A, Crystal Structure Of Human Peroxisomal Delta3,5, Delta2,4-Dienoyl Coa Isomerase Length = 296 | Back alignment and structure |
|
| >pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From Mycobacterium Marinum In Complex With An Unknown Ligand Length = 272 | Back alignment and structure |
|
| >pdb|3KQF|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis. Length = 265 | Back alignment and structure |
|
| >pdb|3OC7|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase From Mycobacterium Avium Length = 267 | Back alignment and structure |
|
| >pdb|3HE2|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Tuberculosis Length = 264 | Back alignment and structure |
|
| >pdb|1NZY|B Chain B, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269 | Back alignment and structure |
|
| >pdb|1NZY|A Chain A, 4-Chlorobenzoyl Coenzyme A Dehalogenase From Pseudomonas Sp. Strain Cbs-3 Length = 269 | Back alignment and structure |
|
| >pdb|3MYB|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Mycobacterium Smegm Length = 286 | Back alignment and structure |
|
| >pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus Anthracis Str. 'ames Ancestor' Length = 261 | Back alignment and structure |
|
| >pdb|2VX2|A Chain A, Crystal Structure Of Human Enoyl Coenzyme A Hydratase Domain-Containing Protein 3 (Echdc3) Length = 287 | Back alignment and structure |
|
| >pdb|2A7K|A Chain A, Carboxymethylproline Synthase (carb) From Pectobacterium Carotovora, Apo Enzyme Length = 250 | Back alignment and structure |
|
| >pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa HydrataseISOMERASE FROM Mycobacterium Abscessus Length = 290 | Back alignment and structure |
|
| >pdb|3QXI|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa1 From Mycobacterium Marinum Length = 265 | Back alignment and structure |
|
| >pdb|1JXZ|A Chain A, Structure Of The H90q Mutant Of 4-Chlorobenzoyl-Coenzyme A Dehalogenase Complexed With 4-Hydroxybenzoyl-Coenzyme A (Product) Length = 269 | Back alignment and structure |
|
| >pdb|4FZW|C Chain C, Crystal Structure Of The Paaf-paag Hydratase-isomerase Complex From E.coli Length = 274 | Back alignment and structure |
|
| >pdb|3PE8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Smegmatis Length = 256 | Back alignment and structure |
|
| >pdb|3HIN|A Chain A, Crystal Structure Of Putative Enoyl-Coa Hydratase From Rhodopseudomonas Palustris Cga009 Length = 275 | Back alignment and structure |
|
| >pdb|3QKA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa5 From Mycobacterium Marinum Length = 261 | Back alignment and structure |
|
| >pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From Pseudomonas Fragi, Form I (Native2) Length = 715 | Back alignment and structure |
|
| >pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase (Gk2873) From Geobacillus Kaustophilus Hta426 Length = 272 | Back alignment and structure |
|
| >pdb|4EML|A Chain A, Synechocystis Sp. Pcc 6803 1,4-Dihydroxy-2-Naphthoyl-Coenzyme A Synthase (Menb) In Complex With Bicarbonate Length = 275 | Back alignment and structure |
|
| >pdb|4ELS|A Chain A, Structure Of E. Coli. 1,4-Dihydroxy-2- Naphthoyl Coenzyme A Synthases (Menb) In Complex With Bicarbonate Length = 285 | Back alignment and structure |
|
| >pdb|3T88|A Chain A, Crystal Structure Of Escherichia Coli Menb In Complex With Substrate Analogue, Osb-Ncoa Length = 289 | Back alignment and structure |
|
| >pdb|1HNO|A Chain A, Crystal Structure Of Peroxisomal Delta3-delta2-enoyl-coa Isomerase From Saccharomyces Cerevisiae Length = 280 | Back alignment and structure |
|
| >pdb|3Q1T|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Mycobacterium Avium Length = 278 | Back alignment and structure |
|
| >pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From Mycobacterium Marinum Length = 298 | Back alignment and structure |
|
| >pdb|1RJM|A Chain A, Crystal Structure Of Menb (rv0548c) From Mycobacterium Tuberculosis Length = 339 | Back alignment and structure |
|
| >pdb|1Q51|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Menb In Complex With Acetoacetyl-Coenzyme A, A Key Enzyme In Vitamin K2 Biosynthesis Length = 314 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} Length = 407 | Back alignment and structure |
|---|
Score = 258 bits (660), Expect = 9e-85
Identities = 69/219 (31%), Positives = 106/219 (48%), Gaps = 7/219 (3%)
Query: 10 IKHSFKQVAFVSHQQRSF---SALPDYSSNDYLQDQVLVEGRAKSRAAILNRPSNLNALN 66
HS + + A +++ + + + LN LNAL+
Sbjct: 8 HHHSSGRENLYFQGHMTNLVDKAAHSFATQNVVFQTLATASGKLVGVVTLNVEKALNALD 67
Query: 67 TSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGK---FEDFKNF 122
MV + W+++P I V++ G+G +AFC+GGDV ALY K E K F
Sbjct: 68 LDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVF 127
Query: 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPD 182
FE Y+ YL T+ KP + DGI MG G G+ ++VVT+ + + PE +G +PD
Sbjct: 128 FEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPD 187
Query: 183 AGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 221
G S++L+ +PG +G +L LT +N + GLA HY
Sbjct: 188 VGGSYFLNRMPGKMGLFLGLTAYHMNAADACYVGLADHY 226
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} Length = 363 | Back alignment and structure |
|---|
Score = 256 bits (656), Expect = 1e-84
Identities = 70/183 (38%), Positives = 112/183 (61%), Gaps = 2/183 (1%)
Query: 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAF 98
++VL+ + + LNRP LNAL +M+ ++ + WE++P+ +++KGAG +AF
Sbjct: 5 AEEVLLGKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAF 64
Query: 99 CSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQ 158
C+GGD+ + + + K + FF Y G+ KP+VA++ GITMG G G+S+
Sbjct: 65 CAGGDIRVISEA-EKAKQKIAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVH 123
Query: 159 GMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLA 218
G +RV T+K +F+ PET +G PD G ++L L G LG +LALTG +L G ++ G+A
Sbjct: 124 GQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLGYFLALTGFRLKGRDVYRAGIA 183
Query: 219 THY 221
TH+
Sbjct: 184 THF 186
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 1e-27
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 15/183 (8%)
Query: 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCS 100
+ + VE L+RP LNA++T M+ L E + + VL+ GAGRAFCS
Sbjct: 6 NGISVEHDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCS 65
Query: 101 GGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGM 160
GGD L G + + + + + KP +A + G +G G ++L
Sbjct: 66 GGD-------LTGGDTAGAADAANRVVRAIT---SLPKPVIAGVHGAAVGFGCSLALACD 115
Query: 161 YRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY---LGEYLALTGEKLNGVEMIACGL 217
V + F T++G PD GAS L L G +A+T EK++ G+
Sbjct: 116 LVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTSR--MAMTAEKISAATAFEWGM 173
Query: 218 ATH 220
+H
Sbjct: 174 ISH 176
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-27
Identities = 36/175 (20%), Positives = 59/175 (33%), Gaps = 11/175 (6%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
L P NLNAL L L E + N D+ F +++ +GR F SG D + + +
Sbjct: 24 LINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDT 83
Query: 116 FEDFKNFFETLYQFVYLQGTFV-------KPHVAILDGITMGCGAGISLQGMYRV-VTDK 167
+ + + FV K + L+G +G A + + DK
Sbjct: 84 NKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDK 143
Query: 168 TVFSNPETQMGFHPDAGASFYLSHLPGYL--GEYLALTGEKLNGVEMIACGLATH 220
P +G + G + L G E + + M G +
Sbjct: 144 VYLLYPFANLGLITEGGTTVSLPLKFGTNTTYE-CLMFNKPFKYDIMCENGFISK 197
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 7e-27
Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 14/185 (7%)
Query: 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCS 100
+ + E + + LNRP LNA M + + + +P++ V++ GAGRAFC+
Sbjct: 3 ETIRYEVKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCA 62
Query: 101 GGDVIALYQLLNEGKF--EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQ 158
G D+ + + ++ G + + L+ KP VA ++G G G ++L
Sbjct: 63 GEDLSGVTEEMDHGDVLRSRYAPMMKALH-------HLEKPVVAAVNGAAAGAGMSLALA 115
Query: 159 GMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY---LGEYLALTGEKLNGVEMIAC 215
+R++++K F+ +G PDAG +YL L G L LA+ GEK+ E A
Sbjct: 116 CDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKALE--LAVLGEKVTAEEAAAL 173
Query: 216 GLATH 220
GLAT
Sbjct: 174 GLATK 178
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-26
Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 6/169 (3%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
L RP LNAL L+ L + +++ G GR FCSGGDV +
Sbjct: 32 LARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMD 91
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
+F Q V P +A L G+ G GA ++L +RV T F+ T
Sbjct: 92 TARLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFT 151
Query: 176 QMGFHP-DAGASFYLSHLPGY---LGEYLALTGEKLNGVEMIACGLATH 220
++G D GA++ L + G L + G+ + E GL +
Sbjct: 152 RVGLSGGDMGAAYLLPRVVGLGHATR--LLMLGDTVRAPEAERIGLISE 198
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-26
Identities = 52/203 (25%), Positives = 75/203 (36%), Gaps = 7/203 (3%)
Query: 21 SHQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAI--LNRPSNLNALNTSMVGRLKRLYE 78
H S L S+ Y ++V+ + I R + NALNT ++ +
Sbjct: 5 HHHHHHSSGLVPRGSSTY--RDIVVK-KEDGFTQIVLSTRSTEKNALNTEVIKEIVNALN 61
Query: 79 SWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVK 138
S + D VL AG FC G D + L + +T+ FV F K
Sbjct: 62 SAAAD-DSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKK 120
Query: 139 PHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LG 197
P V ++G +G GA I +K F P T G PD +S + G
Sbjct: 121 PIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASA 180
Query: 198 EYLALTGEKLNGVEMIACGLATH 220
+ + G KL E A GL +
Sbjct: 181 NEMLIAGRKLTAREACAKGLVSQ 203
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-26
Identities = 45/167 (26%), Positives = 72/167 (43%), Gaps = 4/167 (2%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
NRP NA+NT M + R ++ ++ I VL G G + SG D+ + G
Sbjct: 41 FNRPKKKNAINTEMYHEIMRALKAASKDDSIITVL-TGNGDYYSSGNDLTNFTDIPPGGV 99
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
E KN L +FV F KP +A+++G +G + +D+ F P +
Sbjct: 100 EEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFS 159
Query: 176 QMGFHPDAGASFYLSHLPGYL--GEYLALTGEKLNGVEMIACGLATH 220
+G P+ +S+ + E + + G+KL E A GL T
Sbjct: 160 HLGQSPEGCSSYTFPKIMSPAKATE-MLIFGKKLTAGEACAQGLVTE 205
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 5e-26
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 6/168 (3%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
+ P + NAL+ + + EE+ +G V++ GA AFC+G + +
Sbjct: 18 IKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAG 77
Query: 116 FEDFKNFFETLYQFVYLQ-GTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPE 174
D + + + +P +A ++G+ G G GISL + D F
Sbjct: 78 VRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAW 137
Query: 175 TQMGFHPDAGASFYLSHLPGY---LGEYLALTGEKLNGVEMIACGLAT 219
+G D S+ L+ + G + L LT L E GL +
Sbjct: 138 HTIGIGNDTATSYSLARIVGMRRAME--LMLTNRTLYPEEAKDWGLVS 183
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 9e-26
Identities = 43/188 (22%), Positives = 66/188 (35%), Gaps = 10/188 (5%)
Query: 41 DQVLVEGRAKSRAAI-LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFC 99
D VL E A I NR LNA + + E +P I +++ G GR FC
Sbjct: 29 DAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFC 88
Query: 100 SGGDVIALYQLLNEGKF---EDFKNFFETLYQFVYLQ-GTFVKPHVAILDGITMGCGAGI 155
+G + + K N + + + KP +A ++G +G G
Sbjct: 89 AGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQ 148
Query: 156 SLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY---LGEYLALTGEKLNGVEM 212
+L R F+ + G + G S+ L L + L L L+G E
Sbjct: 149 ALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLTSWAVALD--LLLSGRTFLAEEA 206
Query: 213 IACGLATH 220
GL
Sbjct: 207 AQLGLVKE 214
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 2e-25
Identities = 40/179 (22%), Positives = 64/179 (35%), Gaps = 3/179 (1%)
Query: 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGG 102
+ I R LNA+ ++ L R++ E + VL++G G F +GG
Sbjct: 12 LAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGG 71
Query: 103 DVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYR 162
+ ++ E F V F +P VA ++ + +G G ++L
Sbjct: 72 SFGLIEEM--RASHEALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIA 129
Query: 163 VVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGLATH 220
VV T + ++G A L G +Y L E L G E GL
Sbjct: 130 VVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAKAKYHLLLNEPLTGEEAERLGLVAL 188
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 4e-25
Identities = 42/181 (23%), Positives = 70/181 (38%), Gaps = 5/181 (2%)
Query: 43 VLVEGRAKSRAAI--LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCS 100
++V + I + S N+LN ++ ++ + + D VL+ G FC
Sbjct: 7 IVVR-KQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAAD-DSKLVLLSAVGSVFCC 64
Query: 101 GGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGM 160
G D I + L + + + E + FV F KP + ++G +G GA I
Sbjct: 65 GLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCD 124
Query: 161 YRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGLAT 219
+K F P T G PD ++ + G + L+G KL E GL +
Sbjct: 125 VVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVS 184
Query: 220 H 220
Sbjct: 185 Q 185
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 4e-25
Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 9/169 (5%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
+NRP NAL + + + + ++N D+ V+++GA F +G D + + +
Sbjct: 20 INRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGND---MKDFMGFVQ 76
Query: 116 FEDFKNFFETLYQ-FVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPE 174
+ + + KP + + G+ +G G I LQ + +F P
Sbjct: 77 NPNAGPAGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPF 136
Query: 175 TQMGFHPDAGASFYLSHLPGY---LGEYLALTGEKLNGVEMIACGLATH 220
+G P+ GAS L GY L T +K N + GL
Sbjct: 137 VSLGLSPEGGASQLLVKQAGYHKAAE--LLFTAKKFNAETALQAGLVNE 183
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 4e-25
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 8/168 (4%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
LNRP LNA N ++ + ++P + VL+ G+GR F +G D+ + + +
Sbjct: 21 LNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPN 80
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
F + K F L + + F KP + ++G+ +G GA I ++ P T
Sbjct: 81 FSEGKFGFRGLIKALA---GFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFT 137
Query: 176 QMGFHPDAGASFYLSHLPGY---LGEYLALTGEKLNGVEMIACGLATH 220
+G P+A +S+ L L G L ++ E ++ E + GL
Sbjct: 138 SLGVAPEAASSYLLPQLVGRQNAAW--LLMSSEWIDAEEALRMGLVWR 183
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 5e-25
Identities = 43/180 (23%), Positives = 72/180 (40%), Gaps = 5/180 (2%)
Query: 43 VLVEGRAKSRAAI-LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSG 101
+ E + L+ P LN++ M L ++ + +PD+ VL++G G+AF SG
Sbjct: 15 LRFEPGEHGVLNLVLDSP-GLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSG 73
Query: 102 GDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMY 161
G + + G +E V KP V+ + G +G G ++L
Sbjct: 74 GSFELIDET--IGDYEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADI 131
Query: 162 RVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGLATH 220
V + + T++G A+ L G +Y LT E L+G E GL +
Sbjct: 132 SVASATAKIIDGHTKLGVAAGDHAAICWPLLVGMAKAKYYLLTCETLSGEEAERIGLVST 191
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 6e-25
Identities = 40/169 (23%), Positives = 65/169 (38%), Gaps = 6/169 (3%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRA-FCSGGDVIALYQLLNEG 114
L+ P N L+ + L + I ++++ RA F SG + L ++
Sbjct: 19 LDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQ 78
Query: 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPE 174
+ L V T K VA+++G G G + L R+ + F
Sbjct: 79 SDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENF 138
Query: 175 TQMGFHPDAGASFYLSHLPGY---LGEYLALTGEKLNGVEMIACGLATH 220
+MG PD GAS++L + GY + L L G+ E + GL
Sbjct: 139 HKMGISPDLGASYFLPRIIGYEQTMN--LLLEGKLFTSEEALRLGLIQE 185
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 4e-24
Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 6/202 (2%)
Query: 22 HQQRSFSALPDYSSNDY-LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESW 80
H + S Y + ++ V R LNRP +LN++N + L RL++
Sbjct: 8 HMGTLEAQTQGPGSMVYDMPTEIDVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRL 67
Query: 81 EENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQ-GTFVKP 139
++P ++ GAGRAF +GGD L +L + D + + + L P
Sbjct: 68 TDDPTARAAVITGAGRAFSAGGDFGYLKELSAD---ADLRAKTIRDGREIVLGMARCRIP 124
Query: 140 HVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LGE 198
VA ++G +G G + + + ++P Q+G G L +
Sbjct: 125 VVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLAK 184
Query: 199 YLALTGEKLNGVEMIACGLATH 220
ALTG +++ + GLA H
Sbjct: 185 EYALTGTRISAQRAVELGLANH 206
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 2e-23
Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 10/166 (6%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
+ S+ N + S+V L+ + +N V++ G G F SG L +
Sbjct: 18 MKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRK--TRG 75
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
+ + + P +A + G + G G + L + V + ++V++
Sbjct: 76 EVEVLDLSGLILD-------CEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFM 128
Query: 176 QMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGLATH 220
+ GF P S L G L + + TGE G E+ G+
Sbjct: 129 KYGFTPVGATSLILREKLGSELAQEMIYTGENYRGKELAERGIPFP 174
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 4e-23
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 6/181 (3%)
Query: 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCS 100
++ E R L+ PS N+ + +L Y+ +++P + +++ GA AFCS
Sbjct: 7 TELHEEIRDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCS 66
Query: 101 GGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGM 160
G + A + + DF + + P +A ++G +G G ++L
Sbjct: 67 GAQISAAAETFAAPRNPDF--SASPVQPAAF---ELRTPVIAAVNGHAIGIGMTLALHAD 121
Query: 161 YRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGLAT 219
R++ ++ ++ P+ + G PDA A + L L G + L LTG + + GLA
Sbjct: 122 IRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAVAAELLLTGASFSAQRAVETGLAN 181
Query: 220 H 220
Sbjct: 182 R 182
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 2e-22
Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 7/167 (4%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
++ ++ L + + + V++ G G +FC+ D + N G
Sbjct: 31 VHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTS----FNLGT 86
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFS-NPE 174
D+ + + + P +A ++G I + + + F P
Sbjct: 87 PHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQDGPH 145
Query: 175 TQMGFHPDAGASFYLSHLPGYL-GEYLALTGEKLNGVEMIACGLATH 220
G P GA H+ G G Y LTG++L+ + G
Sbjct: 146 FPSGIVPGDGAHVVWPHVLGSNRGRYFLLTGQELDARTALDYGAVNE 192
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 2e-22
Identities = 30/202 (14%), Positives = 65/202 (32%), Gaps = 10/202 (4%)
Query: 22 HQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAI-LNRPSNLNALNTSMVGRLKRLYESW 80
H P+Y + Y + + + ++ + +
Sbjct: 7 HHHHMTLNQPEYFT-KY--ENLHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDI 63
Query: 81 EENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPH 140
+ D V++ G+G A+ + D +L + N +++ + + Q + P
Sbjct: 64 SRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLL---DIEVPV 120
Query: 141 VAILDGITMGCGAGISLQGMYRVVTDKTVFSN-PETQMGFHPDAGASFYLSHLPGYL-GE 198
++ ++G + + L + ++ TVF + P G P G G G
Sbjct: 121 ISAVNGAALL-HSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGLYRGR 179
Query: 199 YLALTGEKLNGVEMIACGLATH 220
Y T EKL + +
Sbjct: 180 YFLFTQEKLTAQQAYELNVVHE 201
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275 | Back alignment and structure |
|---|
Score = 91.5 bits (228), Expect = 4e-22
Identities = 48/180 (26%), Positives = 72/180 (40%), Gaps = 21/180 (11%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
LNRP NA+N + L ++ ++ D V++ GAG+ F SG D++ + + +
Sbjct: 19 LNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPP 78
Query: 116 FEDFKNFFETLYQFV-YLQGTFV------KPHVAILDGITMGC-GAGISLQGM--YRVVT 165
+D L + Q TF KP +A + G GC G G+ L R T
Sbjct: 79 GDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHG---GCIGGGVDLISACDIRYCT 135
Query: 166 DKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEY-----LALTGEKLNGVEMIACGLATH 220
F E +G D G L LP +G L T K+ E + GL +
Sbjct: 136 QDAFFQVKEVDVGLAADVGT---LQRLPKVIGNRSLVNELTFTARKMMADEALDSGLVSR 192
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 7e-22
Identities = 46/202 (22%), Positives = 74/202 (36%), Gaps = 6/202 (2%)
Query: 22 HQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAI-LNRPSNLNALNTSMVGRLKRLYESW 80
H L + VLV+ A + LNRP +NA+ ++ K++
Sbjct: 4 HHHHHMGTLEAQTQGPGSMSFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDI 63
Query: 81 EENPDIGFVLMKGAGRAFCSGGDV--IALYQLLNEGKFEDFKNFFETLYQFVYLQ-GTFV 137
+ D+ V++ GAG+ FCSG D + L V L
Sbjct: 64 SHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMH 123
Query: 138 KPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHP-DAGASFYLSHLPGY- 195
+P +A ++G +G G ++L RV + F G + G S+ L G
Sbjct: 124 QPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAIGTS 183
Query: 196 LGEYLALTGEKLNGVEMIACGL 217
+ LTG ++ E GL
Sbjct: 184 RASDIMLTGRDVDADEAERIGL 205
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 6e-21
Identities = 44/189 (23%), Positives = 69/189 (36%), Gaps = 2/189 (1%)
Query: 34 SSNDYLQDQVLVEGRAKSRAAI-LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMK 92
S D L D A + LN P N NAL+T++V +L + +P + V++
Sbjct: 3 GSMDALVDYAGPAATGGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLA 62
Query: 93 GAGRAFCSGGDVIALYQLLNEGKFED-FKNFFETLYQFVYLQGTFVKPHVAILDGITMGC 151
G FC+G D+ + D + + P +A +DG
Sbjct: 63 HTGGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAG 122
Query: 152 GAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVE 211
G G+ V ++ F+ E ++G P + L L LTGEK +
Sbjct: 123 GFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLPKLSARAAARYYLTGEKFDARR 182
Query: 212 MIACGLATH 220
GL T
Sbjct: 183 AEEIGLITM 191
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 7e-21
Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 15/201 (7%)
Query: 22 HQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWE 81
H L + + + L RP NALN+ +V L +
Sbjct: 4 HHHHHMGTLEAQTQGPG--SMIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRK-A 60
Query: 82 ENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKF-EDFKNFFETLYQFVYLQGTFVKPH 140
+ +++ G G AFC+G D L+ F D+ + L++ + P
Sbjct: 61 GDGSARAIVLTGQGTAFCAGAD-------LSGDAFAADYPDRLIELHKAMD---ASPMPV 110
Query: 141 VAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LGEY 199
V ++G +G G +++Q RVV F P ++ G D + LS L G+
Sbjct: 111 VGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARA 170
Query: 200 LALTGEKLNGVEMIACGLATH 220
+ L+ EKL + G+A
Sbjct: 171 MLLSAEKLTAEIALHTGMANR 191
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333 | Back alignment and structure |
|---|
Score = 88.3 bits (219), Expect = 2e-20
Identities = 40/195 (20%), Positives = 62/195 (31%), Gaps = 36/195 (18%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
NRP NA+ L L E + +PD+ +L+ G G FC+G D+ A + +
Sbjct: 50 FNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAG 109
Query: 116 FEDFKNFFETLYQFVYLQGTFV--------------------------KPHVAILDGITM 149
+ L KP V + G +
Sbjct: 110 GGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCV 169
Query: 150 GCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGE----YLALTGE 205
G I+L + P ++ P AG +H LG+ L TG+
Sbjct: 170 AGGTDIALHADQVIAAADAKIGYPPMRVWGVPAAG---LWAHR---LGDQRAKRLLFTGD 223
Query: 206 KLNGVEMIACGLATH 220
+ G + GLA
Sbjct: 224 CITGAQAAEWGLAVE 238
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 2e-20
Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 15/171 (8%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
+RP N +N +++ ++ E + V+++G FC G D +YQ + G+
Sbjct: 22 FHRPEANNTINDTLIEECLQVLNQCE-TSTVTVVVLEGLPEVFCFGADFQEIYQEMKRGR 80
Query: 116 FE--DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNP 173
+ + ++ + ++ + G G G + FS
Sbjct: 81 KQASSQEPLYDLWMKLQTGP----YVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLS 136
Query: 174 ETQMGFHPDAGASFYLSHLPGYLGE----YLALTGEKLNGVEMIACGLATH 220
E G +P F L +G Y+ L + ++ E GL
Sbjct: 137 ELLFGLYPACVLPF----LIRRIGRQKAHYMTLMTKPISVQEASEWGLIDA 183
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 2e-20
Identities = 38/185 (20%), Positives = 69/185 (37%), Gaps = 12/185 (6%)
Query: 40 QDQVLVEGRAKSRAAI-LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAF 98
QD +L E ++ + L R + L+ +M+ L + + +++ G GR F
Sbjct: 5 QDGLLGEVLSEGVLTLTLGRA-PAHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIF 63
Query: 99 CSGGDV--IALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGIS 156
C+G D+ I ++ + + FE + KP +A+++GI G +
Sbjct: 64 CAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLM 123
Query: 157 LQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGE----YLALTGEKLNGVEM 212
+ F P Q G A + +G +ALTG +
Sbjct: 124 AACDLAYASPAARFCLPGVQNGGFCTTPA----VAVSRVIGRRAVTEMALTGATYDADWA 179
Query: 213 IACGL 217
+A GL
Sbjct: 180 LAAGL 184
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250 | Back alignment and structure |
|---|
Score = 86.4 bits (215), Expect = 2e-20
Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 12/170 (7%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEG 114
L+ P+ N + ++ +K + + V++ G R+F +GGD + QL
Sbjct: 15 LDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSE 74
Query: 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPE 174
E++ + LYQ V KP +A +DG +G G +L R++ F PE
Sbjct: 75 DIEEWIDRVIDLYQAVL---NVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPE 131
Query: 175 TQMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACGLATH 220
+ G GA+ L G + L+ + L
Sbjct: 132 LKHGIGCSVGAAI----LGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQ 177
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 4e-20
Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 2/164 (1%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
LNRP NA++ ++ + + E+ E++P G +++ GAG A+ +G D+ ++ ++ G
Sbjct: 24 LNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGP 83
Query: 116 FEDFKNFFETLYQFVYLQ-GTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPE 174
+ Q+ + + KP +A+++G G G + + D+ F E
Sbjct: 84 EILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSE 143
Query: 175 TQMGFHPDAGASFYLSHLPG-YLGEYLALTGEKLNGVEMIACGL 217
G P S ++ G +TG+ G + GL
Sbjct: 144 INWGIPPGNLVSKAMADTVGHRQSLMYIMTGKTFGGQKAAEMGL 187
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 4e-20
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 14/179 (7%)
Query: 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGG 102
+LV+ + R LNRP + NAL+ + R + + D+ V++ GA FC+G
Sbjct: 11 LLVDTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGL 70
Query: 103 DVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYR 162
D L +L + + D + + KP + ++G + G ++L
Sbjct: 71 D---LKELGDTTELPDISPKWPDMT----------KPVIGAINGAAVTGGLELALYCDIL 117
Query: 163 VVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGLATH 220
+ ++ F++ ++G P G S L G L ++LTG+ L+ + + GL T
Sbjct: 118 IASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLARRMSLTGDYLSAQDALRAGLVTE 176
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 4e-20
Identities = 43/235 (18%), Positives = 68/235 (28%), Gaps = 25/235 (10%)
Query: 1 MQRIKSLLRIKHSFKQVAFVSHQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAI--LNR 58
+ R + F + R D + + NR
Sbjct: 22 VAPAGEQGRSSTALSDNPFDAKAWRLVDGFDDLTD-------ITYHRHVDDATVRVAFNR 74
Query: 59 PSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGR-------AFCSGGDV------I 105
P NA V L R+ + +PD+G VL+ G G AFCSGGD
Sbjct: 75 PEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSG 134
Query: 106 ALYQLLNEGKFEDFKNFFETLYQFVYLQGTFV-KPHVAILDGITMGCGAGISLQGMYRVV 164
Y + D V F+ K + +++G G G + + +
Sbjct: 135 YQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLA 194
Query: 165 -TDKTVFSNPETQMGFHPDAGASFYLSHLPG-YLGEYLALTGEKLNGVEMIACGL 217
+ F + +G S YL+ G + G +M G
Sbjct: 195 SREYARFKQTDADVGSFDGGYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGA 249
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 1e-19
Identities = 33/166 (19%), Positives = 62/166 (37%), Gaps = 4/166 (2%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
LNRP+ NA + +M+ L +E + D+ ++ G G F +G D+ ++ + G
Sbjct: 24 LNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGA 83
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
+ KP + + G + G ++L + + F+ E
Sbjct: 84 SLTPEGGINPWQVDGR---QLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEV 140
Query: 176 QMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGLATH 220
G +P GA+ G+ LT + + VE G+
Sbjct: 141 NRGIYPFGGATIRFPRTAGWGNAMRWMLTADTFDAVEAHRIGIVQE 186
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 5e-19
Identities = 39/188 (20%), Positives = 68/188 (36%), Gaps = 4/188 (2%)
Query: 34 SSNDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG 93
S + +V E R L+R NA +++M+ L +E + + ++
Sbjct: 5 SEANSGPGRVTREQRGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFA 64
Query: 94 AGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGA 153
G F +G D++ L L F + + +Q KP V + G G
Sbjct: 65 HGEHFTAGLDLMELAPKLAASGFRYPDGGVDP---WGVVQPRRSKPLVVAVQGTCWTAGI 121
Query: 154 GISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEM 212
+ L V T F++ E G P G++ G+ LTG++ + E
Sbjct: 122 ELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWTDAMRYILTGDEFDADEA 181
Query: 213 IACGLATH 220
+ L T
Sbjct: 182 LRMRLLTE 189
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 8e-19
Identities = 36/169 (21%), Positives = 70/169 (41%), Gaps = 9/169 (5%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
+NR S NA + ++ ++ +S + ++ +++K G+ F +G D + Q +
Sbjct: 19 MNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGAD-LTWMQSMANFT 77
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
E+ L +Y KP +A++ G G GAG++ + + F E
Sbjct: 78 EEENLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEV 137
Query: 176 QMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACGLATH 220
++G P A S Y+ +GE A ++ E + + L H
Sbjct: 138 KLGLIP-AVISPYVVRA---IGERAAKMLFMSAEVFDATRAYSLNLVQH 182
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 2e-18
Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 13/169 (7%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
++ +N L +M L ++ + + ++G +++ G R F G D+ L G+
Sbjct: 20 MDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVL----TSGE 73
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
+ + ++ Y ++ KP V G + GA + G +RV E
Sbjct: 74 AKPAIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEV 133
Query: 176 QMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACGLATH 220
+G A L L + G +A G
Sbjct: 134 AIGMTIPYAAMEVLKLR---LTPSAYQQAAGLAKTFFGETALAAGFIDE 179
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 2e-18
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 15/169 (8%)
Query: 55 ILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG 114
LNRP NAL+ +M+ L + + E+ + V++ +G+AFC+G D L ++ E
Sbjct: 40 TLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHD---LKEMRAEP 96
Query: 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGM--YRVVTDKTVFSN 172
E ++ F + P +A + GI AG L M V T F+
Sbjct: 97 SREYYEKLFARCTDVMLAIQRLPAPVIARVHGIAT--AAGCQLVAMCDLAVATRDARFAV 154
Query: 173 PETQMGFHPDAGASFYLSHLPGYLGE----YLALTGEKLNGVEMIACGL 217
+G LS +G + +TGE ++ + GL
Sbjct: 155 SGINVGLFCSTPGV-ALSRN---VGRKAAFEMLVTGEFVSADDAKGLGL 199
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 3e-18
Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 9/169 (5%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
LN P N L+ M L + + E +P + V++ G G+AF +G D +A + + E
Sbjct: 14 LNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGAD-LAFLERVTELG 72
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
E+ +L + + T+ KP VA ++G + GAG++L V+ ++ E
Sbjct: 73 AEENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEV 132
Query: 176 QMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACGLATH 220
++GF A S L +GE A LTG + E A GL
Sbjct: 133 KIGFVA-ALVSVILVRA---VGEKAAKDLLLTGRLVEAREAKALGLVNR 177
|
| >3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 4e-18
Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 14/172 (8%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
LNRP NA N ++ L + E+ D+ ++++ G+ F +G D+ + ++
Sbjct: 35 LNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLT 94
Query: 116 FEDFKNFFETLYQFVYLQ-GTFVKPHVAILDGITMGCGAGISLQGM--YRVVTDKTVFSN 172
E Y L+ KP +A + G + G+ L + + +FS+
Sbjct: 95 LEFIYAHESRRYLEYSLRWRNVPKPSIAAVQGRCI--SGGLLLCWPCDLIIAAEDALFSD 152
Query: 173 PETQMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACGLATH 220
P M + LG A TG + E+ G+
Sbjct: 153 PVVLMDI--GGVEYHGHTWE---LGPRKAKEILFTGRAMTAEEVAQTGMVNR 199
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258 | Back alignment and structure |
|---|
Score = 80.2 bits (199), Expect = 4e-18
Identities = 40/167 (23%), Positives = 73/167 (43%), Gaps = 9/167 (5%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQL-LNEG 114
L RP LNAL+ MV + E+++ N + +++ G GRAF +G D+ + +
Sbjct: 20 LARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPIRL 79
Query: 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPE 174
++ + ++ L P +A ++G+ +G G ++L V + F PE
Sbjct: 80 EWLNQFADWDRL-------SIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPE 132
Query: 175 TQMGFHPDAGASFYLSHLPG-YLGEYLALTGEKLNGVEMIACGLATH 220
+G P AG + L+ L G TG +++ E G+
Sbjct: 133 VNLGVMPGAGGTQRLTKLIGPKRALEWLWTGARMSAKEAEQLGIVNR 179
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 6e-18
Identities = 35/169 (20%), Positives = 57/169 (33%), Gaps = 15/169 (8%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
L+RP NAL+ +V L ++ + ++ GAGR F +G D Y+ +EG
Sbjct: 22 LSRPEKRNALSAELVEALIDGVDAAH-REQVPLLVFAGAGRNFSAGFD-FTDYETQSEGD 79
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
E L Q V +A+ G G G + +R T + F P
Sbjct: 80 LLLRMVRIEMLLQRVA---GSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGL 136
Query: 176 QMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACGLATH 220
+ G + + +G A + + E G
Sbjct: 137 KFGLVL---GTRRFRDI---VGADQALSILGSARAFDADEARRIGFVRD 179
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 6e-18
Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 15/186 (8%)
Query: 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFC 99
Q V VE ILNRP NA++ L + ++ +P+ ++ G FC
Sbjct: 10 QPAVRVEKAGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFC 69
Query: 100 SGGDVIALYQL-LNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQ 158
+G D+ A+ NE + + KP +A + G + G ++L
Sbjct: 70 AGADLKAMGTDRGNELHPHGPGPMGPSRLR-------LSKPVIAAISGHAVAGGIELALW 122
Query: 159 GMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIA 214
RVV + V + G G + LP +G A LTG ++ E +
Sbjct: 123 CDLRVVEEDAVLGVFCRRWGVPLIDGGTI---RLPRLIGHSRAMDLILTGRPVHANEALD 179
Query: 215 CGLATH 220
GL
Sbjct: 180 IGLVNR 185
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265 | Back alignment and structure |
|---|
Score = 79.8 bits (198), Expect = 7e-18
Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 13/184 (7%)
Query: 43 VLVEGRAKSRAAI-LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCS 100
+ V+ I LNR N+L+ +++ L+ + E + V++ GAG +AFC+
Sbjct: 10 ISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCA 69
Query: 101 GGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGM 160
G D + +NE + + T + V +P +A ++GI +G G +SL
Sbjct: 70 GAD-LKERAGMNEEQVRHAVSMIRTTMEMV---EQLPQPVIAAINGIALGGGTELSLACD 125
Query: 161 YRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACG 216
+R+ + ET + P AG + LP +G A TG +++ E G
Sbjct: 126 FRIAAESASLGLTETTLAIIPGAGGT---QRLPRLIGVGRAKELIYTGRRISAQEAKEYG 182
Query: 217 LATH 220
L
Sbjct: 183 LVEF 186
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 1e-17
Identities = 44/199 (22%), Positives = 80/199 (40%), Gaps = 22/199 (11%)
Query: 28 SALPDYSSNDYLQDQVLVEGRAKSRAAI--LNRPSNLNALNTSMVGRLKRLYESWEENPD 85
S + + + + +VLVE R R I +NRP N++N ++ L + + +
Sbjct: 4 SMVSELNGDTE--PEVLVEQR--DRILIITINRPKAKNSVNAAVSRALADAMDRLDADAG 59
Query: 86 IGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILD 145
+ ++ GAG +FC+G D+ A G+ + + + KP +A ++
Sbjct: 60 LSVGILTGAGGSFCAGMDLKA----FARGENVVVEGRG-----LGFTERPPAKPLIAAVE 110
Query: 146 GITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLA---- 201
G + G ++L V + F PE + G G LP + +A
Sbjct: 111 GYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLL---RLPERIPYAIAMELA 167
Query: 202 LTGEKLNGVEMIACGLATH 220
LTG+ L+ A G+
Sbjct: 168 LTGDNLSAERAHALGMVNV 186
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 2e-17
Identities = 43/222 (19%), Positives = 77/222 (34%), Gaps = 30/222 (13%)
Query: 25 RSFSALPDYSSNDYLQ-DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEEN 83
R+ LP++ ++ + V +E R + R LNA + V ++ + +
Sbjct: 150 RALELLPEFVRTGEVEMEAVHLERRDGVARLTMCRDDRLNAEDGQQVDDMETAVDLALLD 209
Query: 84 PDIGFVLMKGA---------GRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQG 134
P + L++G R F +G ++ L Q + +++ V
Sbjct: 210 PGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVL 269
Query: 135 ------------TFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPD 182
KP VA +DG +G GA + L + + FS P + G P
Sbjct: 270 TNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPG 329
Query: 183 AGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACGLATH 220
A L + G ++ L G ++ E A L
Sbjct: 330 AANLR----LGRFAGPRVSRQVILEGRRIWAKEPEARLLVDE 367
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 2e-17
Identities = 41/214 (19%), Positives = 75/214 (35%), Gaps = 17/214 (7%)
Query: 10 IKHSFKQVAFVSHQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSM 69
H V + S ++ R +L+ P N L+ +M
Sbjct: 4 HHHHSSGVDLGTENLYFQSMGAGRRESEP--RPTSARQLDGIRNIVLSNPKKRNTLSLAM 61
Query: 70 VGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQF 129
+ L+ ++ D+ +++ G F SG D L +L E + F+T +
Sbjct: 62 LKSLQSDILHDADSNDLKVIIISAEGPVFSSGHD---LKELTEEQGRDYHAEVFQTCSKV 118
Query: 130 VYLQGTFVKPHVAILDGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGASF 187
+ P +A+++G+ AG L V +DK+ F+ P +G
Sbjct: 119 MMHIRNHPVPVIAMVNGLAT--AAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPG-- 174
Query: 188 YLSHLPGYLGEYLA----LTGEKLNGVEMIACGL 217
L + +A TGE ++ E + GL
Sbjct: 175 --VALARAVPRKVALEMLFTGEPISAQEALLHGL 206
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 3e-17
Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 21/186 (11%)
Query: 41 DQVLVEGRAKSRAAI--LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAF 98
D+VL+E R R + +NRP NA+N ++ L + + + D+ ++ GAG F
Sbjct: 7 DEVLIEQR--DRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNF 64
Query: 99 CSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQ 158
C+G D+ A + + KP +A ++G + G + L
Sbjct: 65 CAGMDLKAFVS----------GEAVLSERGLGFTNVPPRKPIIAAVEGFALAGGTELVLS 114
Query: 159 GMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIA 214
V F PE + G AG LP + +A LTGE +
Sbjct: 115 CDLVVAGRSAKFGIPEVKRGLVAGAGGLL---RLPNRIPYQVAMELALTGESFTAEDAAK 171
Query: 215 CGLATH 220
G
Sbjct: 172 YGFINR 177
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 4e-17
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 16/184 (8%)
Query: 43 VLVEGRAKSRAAI-LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSG 101
+ I L+RP LNALN ++ + ++ + +IG +++ G+ RAF +G
Sbjct: 11 IATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAG 70
Query: 102 GDVIALYQL-LNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGM 160
D+ + L ++ + + + +++L KP VA + G +G G +++
Sbjct: 71 ADIAEMVTLTPHQARERNLLSGWDSL-------TQVRKPIVAAVAGYALGGGCELAMLCD 123
Query: 161 YRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACG 216
+ D F PE +G P G + L+ +G+ A LTG L E G
Sbjct: 124 LVIAADTARFGQPEITLGILPGLGGTQRLTRA---VGKAKAMDLCLTGRSLTAEEAERVG 180
Query: 217 LATH 220
L +
Sbjct: 181 LVSR 184
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 6e-17
Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 2/166 (1%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
+NRPS NAL+ M+ + ++ + +PDI ++ GAG FC+G D + G
Sbjct: 35 MNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMD-LKAATKKPPGD 93
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
++ + + KP +A ++G + G I RV + F E
Sbjct: 94 SFKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEA 153
Query: 176 QMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGLATH 220
+ +P G++ L Y + L LTG + E GL H
Sbjct: 154 KWSLYPMGGSAVRLVRQIPYTVACDLLLTGRHITAAEAKEMGLVGH 199
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 8e-17
Identities = 51/205 (24%), Positives = 84/205 (40%), Gaps = 15/205 (7%)
Query: 22 HQQRSFSALPD----YSSNDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLY 77
H L S Y + +LVE + LNRP LNALN+ ++ +
Sbjct: 4 HHHHHMGTLEAQTQGPGSMTY--ETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAA 61
Query: 78 ESWEENPDIGFVLMKGAGRAFCSGGDVIALYQL-LNEGKFEDFKNFFETLYQFVYLQGTF 136
+++PDIG +++ G+ +AF +G D+ + L + DF + L
Sbjct: 62 TELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKL-------AAV 114
Query: 137 VKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG-Y 195
P +A + G +G G +++ + D F PE ++G P G S L+ G
Sbjct: 115 RTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKA 174
Query: 196 LGEYLALTGEKLNGVEMIACGLATH 220
L LTG ++ E GL +
Sbjct: 175 KAMDLILTGRTMDAAEAERSGLVSR 199
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 1e-16
Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 4/166 (2%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
+NRP NAL+T+MV + ++ + + I ++ GAG A+C GGD ++ ++ +G
Sbjct: 24 MNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGD-LSDGWMVRDGS 82
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
T+ + + L T KP +A ++G +G G + Q RV + F PE
Sbjct: 83 APPL--DPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEV 140
Query: 176 QMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGLATH 220
Q G P AG+ L Y + LTGE L E GL H
Sbjct: 141 QRGLVPGAGSMVRLKRQIPYTKAMEMILTGEPLTAFEAYHFGLVGH 186
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 1e-16
Identities = 35/170 (20%), Positives = 72/170 (42%), Gaps = 12/170 (7%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEG 114
+NR N+L+ +++ L + ++ + + + ++++ FC+G D + ++
Sbjct: 27 INRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGAD-LKERAKMSSS 85
Query: 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPE 174
+ F + + + P +A +DG+ +G G ++L RV E
Sbjct: 86 EVGPFVSKIRAVINDI---ANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVE 142
Query: 175 TQMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACGLATH 220
T++ P G + LP +G LA + L+G E A GL +H
Sbjct: 143 TKLAIIPGGGGT---QRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISH 189
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261 | Back alignment and structure |
|---|
Score = 75.6 bits (187), Expect = 2e-16
Identities = 36/169 (21%), Positives = 68/169 (40%), Gaps = 11/169 (6%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
LN NA+++ ++ + L + E++ +I V++ G GR F +G D+ + +
Sbjct: 21 LNHA-PANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQ 79
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
+ + ++ V KP +A + G +G G ++ R T+ PE
Sbjct: 80 ATELAQLGQVTFERV---EKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPEL 136
Query: 176 QMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACGLATH 220
+G P + L +G+ A LT + G E + GL
Sbjct: 137 TLGLIPGFAGTQRLPRY---VGKAKACEMMLTSTPITGAEALKWGLVNG 182
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 3e-16
Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 12/183 (6%)
Query: 43 VLVE--GRAKSRAAI-LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFC 99
++ E G+ S I LNRP LNAL ++ L + E++EE+P +G +++ G +AF
Sbjct: 6 IITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFA 65
Query: 100 SGGDVIALYQL-LNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQ 158
+G D+ + + F + ++ + KP +A ++G +G G +++
Sbjct: 66 AGADIKEMQNRTFQDCYSGKFLSHWDHI-------TRIKKPVIAAVNGYALGGGCELAMM 118
Query: 159 GMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG-YLGEYLALTGEKLNGVEMIACGL 217
+K F PE +G P AG + L+ G L + LTG++++ + GL
Sbjct: 119 CDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGL 178
Query: 218 ATH 220
+
Sbjct: 179 VSK 181
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 2e-15
Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 13/169 (7%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
LNRP NALN ++ LK + I V++ G G F +G D ++ + + +
Sbjct: 31 LNRPKKRNALNDGLMAALKDCLT--DIPDQIRAVVIHGIGDHFSAGLD-LSELRERDATE 87
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
+ ++ + P +A L G +G G ++ RV ++ PE
Sbjct: 88 GLVHSQTWHRVFDKIQ---YCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEG 144
Query: 176 QMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACGLATH 220
G G S L L +G LTG + E + G + +
Sbjct: 145 SRGIFVGGGGSVRLPRL---IGVARMADMMLTGRVYSAAEGVVHGFSQY 190
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 3e-15
Identities = 41/203 (20%), Positives = 78/203 (38%), Gaps = 20/203 (9%)
Query: 24 QRSFSALPDYSSNDYLQDQVLVEGRAKSRAAI-LNRPSNLNALNTSMVGRLKRLYESWEE 82
R + L +Y D++ E + A + +NRP NA V + + +
Sbjct: 3 NRQWETLREY-------DEIKYE-FYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARD 54
Query: 83 NPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141
+ ++ +++ G G AFCSGGD G+ + + L + + KP +
Sbjct: 55 DQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIR---IIPKPVI 111
Query: 142 AILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLA 201
A++ G +G G +++ + D +F ++G S YL+ + +G A
Sbjct: 112 AMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARI---VGHKKA 168
Query: 202 ----LTGEKLNGVEMIACGLATH 220
+ N E + GL
Sbjct: 169 REIWYLCRQYNAQEALDMGLVNT 191
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 4e-15
Identities = 41/186 (22%), Positives = 74/186 (39%), Gaps = 15/186 (8%)
Query: 43 VLVEGRAKSRAAI-LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCS 100
+ E A I +NRP NA V + + + +IG +++ GAG +AFCS
Sbjct: 29 IRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCS 88
Query: 101 GGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGM 160
GGD + K + + L ++ T KP VA++ G ++ G G L M
Sbjct: 89 GGD-QKVRGDYGGYKDDSGVHHLNVLDFQRQIR-TCPKPVVAMVAGYSI--GGGHVLHMM 144
Query: 161 --YRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIA 214
+ D +F ++G + Y++ + +G+ A + + + +
Sbjct: 145 CDLTIAADNAIFGQTGPKVGSFDGGWGASYMARI---VGQKKAREIWFLCRQYDAKQALD 201
Query: 215 CGLATH 220
GL
Sbjct: 202 MGLVNT 207
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 5e-15
Identities = 42/170 (24%), Positives = 75/170 (44%), Gaps = 13/170 (7%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEG 114
+NRP NA+N ++ + E + +P++ V++ GAG ++FC+G D+ A +
Sbjct: 24 INRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKA----IARR 79
Query: 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPE 174
+ + Y++ KP +A ++G +G G ++L V ++ F PE
Sbjct: 80 ENLYHPD-HPEWGFAGYVRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPE 138
Query: 175 TQMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACGLATH 220
+ G AG F ++ L +A LTGE L+ GL
Sbjct: 139 VKRGLIAAAGGVFRIAEQ---LPRKVAMRLLLTGEPLSAAAARDWGLINE 185
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287 | Back alignment and structure |
|---|
Score = 71.9 bits (177), Expect = 6e-15
Identities = 27/179 (15%), Positives = 53/179 (29%), Gaps = 25/179 (13%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDV--------IA 106
L+ P +N + +M+ L+ + + ++ + ++ A F + D+ +
Sbjct: 24 LDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQ 82
Query: 107 LYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVV-T 165
F+ E + + + L G G GA
Sbjct: 83 ELAASAPADVNVFQAVGELI-------RHQPQVTIVKLAGKARGGGAEFVAAADMAFAAA 135
Query: 166 DKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACGLATH 220
+ E MG P G + YL +G A LT + + + G
Sbjct: 136 ETAGLGQIEALMGIIPGGGGTQYLRGR---VGRNRALEVVLTADLFDAETAASYGWINR 191
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 7e-15
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 13/174 (7%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDV---IALYQLLN 112
LNRP LNAL+ M+ L+ Y E + + +++ G GRAFCSG DV +++
Sbjct: 26 LNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIY 85
Query: 113 EGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSN 172
E + + +E + T KP + ++GI G G + +++ F +
Sbjct: 86 ERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFD 145
Query: 173 PETQMGFHPDAGASFYLSHLPGYLGEYLA----LTG--EKLNGVEMIACGLATH 220
P +G + L +A L G E+++ GL +
Sbjct: 146 PHVSIGLVAGRELVR----VSRVLPRSIALRMALMGKHERMSAQRAYELGLISE 195
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 1e-14
Identities = 35/184 (19%), Positives = 65/184 (35%), Gaps = 11/184 (5%)
Query: 43 VLVEGRAKSRAAI--LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFC 99
VLVE A + A+ P +N+L+ + L E E + V++ F
Sbjct: 5 VLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFS 63
Query: 100 SGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQG 159
+G D+ + + + + + L+ +Y V+ ++G G ++L
Sbjct: 64 AGLDLTEMCG-RSPAHYAGYWKAVQELWLRLY---QSNLVLVSAINGACPAGGCLVALTC 119
Query: 160 MYRVVTDKTVFSN--PETQMGFHPDAGASFYLSHLPG-YLGEYLALTGEKLNGVEMIACG 216
YR++ D + ETQ+G L + G E G E + G
Sbjct: 120 DYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAAERALQLGLLFPPAEALQVG 179
Query: 217 LATH 220
+
Sbjct: 180 IVDQ 183
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 3e-14
Identities = 33/211 (15%), Positives = 72/211 (34%), Gaps = 23/211 (10%)
Query: 28 SALPDYSSNDYLQDQVLVEGRAKSRAAI--LNRPSNLN----ALNTSMVGRLKRLYESWE 81
+ P +N +++ E + ++ +N +T +V + +
Sbjct: 19 AVQPFIRTNIGSTLRIIEE--PQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLG 76
Query: 82 ENPD-----IGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYL---Q 133
+ + V++ F GGD+ QL+ EG ++ + + V+
Sbjct: 77 QRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVG 136
Query: 134 GTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLP 193
+A++ G +G G +L + + + PE P GA S +
Sbjct: 137 LGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMGAY---SFMC 193
Query: 194 GYLGEYLA----LTGEKLNGVEMIACGLATH 220
+ +LA L G + +++ GL
Sbjct: 194 QRISAHLAQKIMLEGNLYSAEQLLGMGLVDR 224
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 3e-14
Identities = 27/167 (16%), Positives = 52/167 (31%), Gaps = 16/167 (9%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
LN +NA++ ++ + E++ I V++ G G D+ +
Sbjct: 21 LNNG-KVNAISPDVIIAFNAALDQAEKDRAI--VIVTGQPGILSGGYDLKVMTSSAEAAI 77
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRV-VTDKTVFSNPE 174
+ TL + + + P + G + GA + L YR+ V E
Sbjct: 78 --NLVAQGSTLARRML---SHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNE 132
Query: 175 TQMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACGL 217
Q+G L + + E + +A G
Sbjct: 133 VQIGMTMHHAGI---ELARDRLRKSAFNRSVINAEMFDPEGAMAAGF 176
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 4e-14
Identities = 42/204 (20%), Positives = 72/204 (35%), Gaps = 13/204 (6%)
Query: 22 HQQRSFSALPDYSSNDYLQDQVLVEGRAKSRAAI-LNRPSNLNALNTSMVGRLKRLYESW 80
H L + ++ + + A + ++RP NA+ + + +
Sbjct: 4 HHHHHMGTLEAQTQGPGSMNEFVSVVADQGLATLVVSRP-PTNAMTRQVYREIVAAADEL 62
Query: 81 EENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPH 140
DIG V++ G F +G D + + LN + + V KP
Sbjct: 63 GRRDDIGAVVLFGGHEIFSAGDD-MPELRTLNAPEADTAARVRLEAIDAV---AAIPKPT 118
Query: 141 VAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYL 200
VA + G +G G ++L +RV D F E G P G L+ + +G
Sbjct: 119 VAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRV---VGSSR 175
Query: 201 A----LTGEKLNGVEMIACGLATH 220
A +G + E +A GL
Sbjct: 176 AKELVFSGRFFDAEEALALGLIDD 199
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 7e-14
Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 22/188 (11%)
Query: 43 VLVEGRAKSRAAI-LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG------ 95
+L +A A I +NRP NA V L + + E+ IG VL+ GAG
Sbjct: 12 ILYY-KAGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGK 70
Query: 96 RAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGI 155
AFCSGGD G +D + L + K +A++ G + G G
Sbjct: 71 YAFCSGGDQ---SVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAI--GGGH 125
Query: 156 SLQGM--YRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNG 209
L + + D +F ++G S YL+ + +G+ A + +
Sbjct: 126 VLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARI---VGQKKAREIWYLCRQYSA 182
Query: 210 VEMIACGL 217
E G+
Sbjct: 183 QEAERMGM 190
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 2e-13
Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 14/171 (8%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEG 114
L+ N+ + + +PDI V++ + F +G D I + +
Sbjct: 24 LHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGAD-INFLRSADPR 81
Query: 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTV-FSNP 173
F F + + ++A L+G T+G G ++L R + D+ P
Sbjct: 82 FKTQFCLFCNETLDKI---ARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLP 138
Query: 174 ETQMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACGLATH 220
E +G G + L+ L +G A +TGE + E + GL
Sbjct: 139 EVSLGVLAGTGGTQRLARL---IGYSRALDMNITGETITPQEALEIGLVNR 186
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-13
Identities = 35/173 (20%), Positives = 53/173 (30%), Gaps = 15/173 (8%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEG 114
N P +N + +V L L E V+ A F D+ + + E
Sbjct: 23 FNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEA 81
Query: 115 --KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVV-TDKTVFS 171
L++ + +A L G G G+ L R + +
Sbjct: 82 AKAGGPGDASLGMLFRKL---SQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILG 138
Query: 172 NPETQMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACGLATH 220
PE +G P AGA +L+ L LG A LT + G
Sbjct: 139 QPEVGIGAPPGAGAIQHLTRL---LGRGRALEAVLTSSDFDADLAERYGWVNR 188
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-12
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 2/129 (1%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
L P +N+L+ ++ LK YE D+ +++ GA F G D+ ++
Sbjct: 23 LINPP-VNSLSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGEMQKGNV 81
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
E + L+ KP VA +DG+ +G G +++ R+ PE
Sbjct: 82 KEPKAGYISIDIITDLLE-AARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPEL 140
Query: 176 QMGFHPDAG 184
Q+G P G
Sbjct: 141 QLGVIPGFG 149
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 3e-12
Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 10/182 (5%)
Query: 48 RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWE-ENPDIGFVLMKGAG-RAFCSGGDVI 105
A+ LN+ + + L + E+P++ V++ R FCSG ++
Sbjct: 38 IAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIF 97
Query: 106 ALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISL--QGMYRV 163
L + K K ET +A ++G G G ++L +Y V
Sbjct: 98 MLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLV 157
Query: 164 VTDKTVFSNPETQM-GFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACGLA 218
+ S PE + G P G ++ + A E + G A L
Sbjct: 158 DDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRK-VRHDRADIFCTVVEGVRGERAKAWRLV 216
Query: 219 TH 220
Sbjct: 217 DE 218
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 5e-12
Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 15/171 (8%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG--RAFCSGGDVIALYQLLNE 113
N LNAL+ + L + P+I ++++ + F +G D+ L +
Sbjct: 19 FNYGRKLNALSKVFIDDLMQALSDL-NRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRD 77
Query: 114 GKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNP 173
+ + + + + F KP +++++G G + + + + FS
Sbjct: 78 PLS--YDDPLRQITRMIQ---KFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMT 132
Query: 174 ETQMGFHPDAGASFYLSHLPGYLGEYLA----LTGEKLNGVEMIACGLATH 220
+G + L+ G ++ T + +A G+ H
Sbjct: 133 PVNLGVPYNLVGIHNLTRD---AGFHIVKELIFTASPITAQRALAVGILNH 180
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 9e-12
Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
L P +NA++ +++ ++ + + + +++ GA FC+G D+
Sbjct: 36 LCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPGLA 94
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
+ + KP +A + G+ +G G ++L YR+ K PE
Sbjct: 95 LGSLVDEIQRY----------QKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEV 144
Query: 176 QMGFHPDAG 184
+G P A
Sbjct: 145 TLGILPGAR 153
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 9e-12
Identities = 31/157 (19%), Positives = 61/157 (38%), Gaps = 4/157 (2%)
Query: 63 NALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122
N N + L++ ++ + + + V++ F G D+ + E
Sbjct: 30 NKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGN 89
Query: 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPD 182
E F + P VA ++GI +G G + L +RV+ D PE ++G +P
Sbjct: 90 LEANKIFSDFE-DLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPG 148
Query: 183 AGASFYLSHLPGYLG--EYLALTGEKLNGVEMIACGL 217
G + L L G E++ +G++ + +
Sbjct: 149 FGGTVRLPRLIGVDNAVEWI-ASGKENRAEDALKVSA 184
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 269 | |||
| 4fzw_C | 274 | 1,2-epoxyphenylacetyl-COA isomerase; structural ge | 100.0 | |
| 3hrx_A | 254 | Probable enoyl-COA hydratase; the spiral fold, the | 100.0 | |
| 4fzw_A | 258 | 2,3-dehydroadipyl-COA hydratase; structural genomi | 100.0 | |
| 3g64_A | 279 | Putative enoyl-COA hydratase; alpha-beta structure | 100.0 | |
| 3pea_A | 261 | Enoyl-COA hydratase/isomerase family protein; stru | 100.0 | |
| 3i47_A | 268 | Enoyl COA hydratase/isomerase (crotonase); structu | 100.0 | |
| 3lke_A | 263 | Enoyl-COA hydratase; nysgrc, target 112 structural | 100.0 | |
| 4di1_A | 277 | Enoyl-COA hydratase ECHA17; structural genomics, s | 100.0 | |
| 3kqf_A | 265 | Enoyl-COA hydratase/isomerase family protein; IDP0 | 100.0 | |
| 4hdt_A | 353 | 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti | 100.0 | |
| 3sll_A | 290 | Probable enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3hin_A | 275 | Putative 3-hydroxybutyryl-COA dehydratase; structu | 100.0 | |
| 2j5i_A | 276 | P-hydroxycinnamoyl COA hydratase/lyase; vanillin, | 100.0 | |
| 3qmj_A | 256 | Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, | 100.0 | |
| 3gow_A | 254 | PAAG, probable enoyl-COA hydratase; the spiral fol | 100.0 | |
| 3rrv_A | 276 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 3fdu_A | 266 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3p5m_A | 255 | Enoyl-COA hydratase/isomerase; seattle structural | 100.0 | |
| 3qk8_A | 272 | Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB | 100.0 | |
| 2ej5_A | 257 | Enoyl-COA hydratase subunit II; structural genomic | 100.0 | |
| 2f6q_A | 280 | Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis | 100.0 | |
| 1nzy_A | 269 | Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen | 100.0 | |
| 3h81_A | 278 | Enoyl-COA hydratase ECHA8; niaid, decode, infectio | 100.0 | |
| 3lao_A | 258 | Enoyl-COA hydratase/isomerase; alpha-beta sandwich | 100.0 | |
| 2gtr_A | 261 | CDY-like, chromodomain Y-like protein; structural | 100.0 | |
| 2fbm_A | 291 | Y chromosome chromodomain protein 1, telomeric IS; | 100.0 | |
| 3r6h_A | 233 | Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m | 100.0 | |
| 3r9q_A | 262 | Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome | 100.0 | |
| 3gkb_A | 287 | Putative enoyl-COA hydratase; structural genomics, | 100.0 | |
| 2ppy_A | 265 | Enoyl-COA hydratase; beta-oxidation, fatty acid me | 100.0 | |
| 3moy_A | 263 | Probable enoyl-COA hydratase; ssgcid, seattle stru | 100.0 | |
| 1dci_A | 275 | Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg | 100.0 | |
| 2a7k_A | 250 | CARB; crotonase, antibiotic, beta-lactam, biosynth | 100.0 | |
| 3myb_A | 286 | Enoyl-COA hydratase; ssgcid, struct genomics, seat | 100.0 | |
| 1pjh_A | 280 | Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral | 100.0 | |
| 3ot6_A | 232 | Enoyl-COA hydratase/isomerase family protein; stru | 100.0 | |
| 3qre_A | 298 | Enoyl-COA hydratase, ECHA12_1; structural genomics | 100.0 | |
| 3swx_A | 265 | Probable enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3pe8_A | 256 | Enoyl-COA hydratase; emerald biostructures, struct | 100.0 | |
| 2pbp_A | 258 | Enoyl-COA hydratase subunit I; B-oxidation, struct | 100.0 | |
| 3tlf_A | 274 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 3t8b_A | 334 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 100.0 | |
| 3l3s_A | 263 | Enoyl-COA hydratase/isomerase family protein; crot | 100.0 | |
| 3njd_A | 333 | Enoyl-COA hydratase; ssgcid, mycobacerium smegmati | 100.0 | |
| 1wz8_A | 264 | Enoyl-COA hydratase; lyase, crotonase, hexamer, st | 100.0 | |
| 3rsi_A | 265 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3qxz_A | 265 | Enoyl-COA hydratase/isomerase; structural genomics | 100.0 | |
| 2vx2_A | 287 | Enoyl-COA hydratase domain-containing protein 3; i | 100.0 | |
| 4eml_A | 275 | Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe | 100.0 | |
| 4f47_A | 278 | Enoyl-COA hydratase ECHA19; ssgcid, seattle struct | 100.0 | |
| 3t89_A | 289 | 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase | 100.0 | |
| 2uzf_A | 273 | Naphthoate synthase; lyase, menaquinone biosynthes | 100.0 | |
| 3m6n_A | 305 | RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X | 100.0 | |
| 3t3w_A | 279 | Enoyl-COA hydratase; ssgcid, structural genomics, | 100.0 | |
| 3oc7_A | 267 | Enoyl-COA hydratase; seattle structural genomics c | 100.0 | |
| 3qxi_A | 265 | Enoyl-COA hydratase ECHA1; structural genomics, se | 100.0 | |
| 1uiy_A | 253 | Enoyl-COA hydratase; lyase, beta-oxidation, croton | 100.0 | |
| 2j5g_A | 263 | ALR4455 protein; enzyme evolution, C-C bond hydrol | 100.0 | |
| 3h0u_A | 289 | Putative enoyl-COA hydratase; structural genomics, | 100.0 | |
| 3trr_A | 256 | Probable enoyl-COA hydratase/isomerase; ssgcid, st | 100.0 | |
| 1mj3_A | 260 | Enoyl-COA hydratase, mitochondrial; homohexamer, l | 100.0 | |
| 2q35_A | 243 | CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} | 100.0 | |
| 1szo_A | 257 | 6-oxocamphor hydrolase; enzyme-product complex; HE | 100.0 | |
| 3r9t_A | 267 | ECHA1_1; ssgcid, seattle structural genomics cente | 100.0 | |
| 3he2_A | 264 | Enoyl-COA hydratase ECHA6; fatty acid metabolism, | 100.0 | |
| 3hp0_A | 267 | Putative polyketide biosynthesis enoyl-COA hydrata | 100.0 | |
| 1sg4_A | 260 | 3,2-trans-enoyl-COA isomerase, mitochondrial; crot | 100.0 | |
| 1ef8_A | 261 | Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc | 100.0 | |
| 3bpt_A | 363 | 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet | 100.0 | |
| 3isa_A | 254 | Putative enoyl-COA hydratase/isomerase; structural | 100.0 | |
| 3ju1_A | 407 | Enoyl-COA hydratase/isomerase family protein; alph | 100.0 | |
| 1hzd_A | 272 | AUH, AU-binding protein/enoyl-COA hydratase; RNA-b | 100.0 | |
| 2np9_A | 440 | DPGC; protein inhibitor complex, oxidoreductase; H | 100.0 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 100.0 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 100.0 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 100.0 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 100.0 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 99.88 | |
| 3rst_A | 240 | Signal peptide peptidase SPPA; alpha/beta protein | 99.86 | |
| 3viv_A | 230 | 441AA long hypothetical NFED protein; protein-pept | 99.83 | |
| 2f9y_B | 304 | Acetyl-coenzyme A carboxylase carboxyl transferas | 99.65 | |
| 1y7o_A | 218 | ATP-dependent CLP protease proteolytic subunit; hy | 99.65 | |
| 2f9i_A | 327 | Acetyl-coenzyme A carboxylase carboxyl transferase | 99.58 | |
| 2f9y_A | 339 | Acetyl-COA carboxylase, carboxyltransferase alpha; | 99.54 | |
| 2cby_A | 208 | ATP-dependent CLP protease proteolytic subunit 1; | 99.07 | |
| 3qwd_A | 203 | ATP-dependent CLP protease proteolytic subunit; ca | 98.76 | |
| 1yg6_A | 193 | ATP-dependent CLP protease proteolytic subunit; en | 98.74 | |
| 2f6i_A | 215 | ATP-dependent CLP protease, putative; structural g | 98.73 | |
| 2w3p_A | 556 | Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri | 98.71 | |
| 3p2l_A | 201 | ATP-dependent CLP protease proteolytic subunit; st | 98.58 | |
| 1tg6_A | 277 | Putative ATP-dependent CLP protease proteolytic S; | 98.55 | |
| 3bf0_A | 593 | Protease 4; bacterial, hydrolase, inner membrane, | 98.25 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 98.24 | |
| 4gm2_A | 205 | ATP-dependent CLP protease proteolytic subunit; st | 98.24 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 98.14 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 98.1 | |
| 2f9i_B | 285 | Acetyl-coenzyme A carboxylase carboxyl transferase | 98.04 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 97.87 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 97.81 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 97.76 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 97.63 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 97.57 | |
| 1x0u_A | 522 | Hypothetical methylmalonyl-COA decarboxylase ALPH; | 97.17 | |
| 1vrg_A | 527 | Propionyl-COA carboxylase, beta subunit; TM0716, s | 96.79 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 96.74 | |
| 1pix_A | 587 | Glutaconyl-COA decarboxylase A subunit; biotin-dep | 96.39 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 96.39 | |
| 1on3_A | 523 | Methylmalonyl-COA carboxyltransferase 12S subunit; | 96.15 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 96.12 | |
| 3iav_A | 530 | Propionyl-COA carboxylase complex B subunit; accas | 96.01 | |
| 2bzr_A | 548 | Propionyl-COA carboxylase beta chain 5; fatty acid | 96.0 | |
| 3n6r_B | 531 | Propionyl-COA carboxylase, beta subunit; protein c | 95.52 | |
| 3u9r_B | 555 | MCC beta, methylcrotonyl-COA carboxylase, beta-sub | 95.18 | |
| 3gf3_A | 588 | Glutaconyl-COA decarboxylase subunit A; sodium ION | 94.82 | |
| 2x24_A | 793 | Acetyl-COA carboxylase; fatty acid biosynthesis, l | 89.84 | |
| 3k8x_A | 758 | Acetyl-COA carboxylase; transferase, carboxyltrans | 80.9 |
| >4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-54 Score=379.83 Aligned_cols=217 Identities=20% Similarity=0.259 Sum_probs=185.7
Q ss_pred CccccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCC
Q 024298 36 NDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115 (269)
Q Consensus 36 ~~~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~ 115 (269)
...|+++|.++.+|+|++||||||++.|+||.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++........
T Consensus 10 ~GsM~e~il~~~~~gVa~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~ 89 (274)
T 4fzw_C 10 HGSMMEFILSHVEKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPA 89 (274)
T ss_dssp ------CEEEEEETTEEEEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------C
T ss_pred cccccccEEEEEECCEEEEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccc
Confidence 34588999999999999999999999999999999999999999999999999999999999999999998765433333
Q ss_pred hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH
Q 024298 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY 195 (269)
Q Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~ 195 (269)
.+....+.+.++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 169 (274)
T 4fzw_C 90 PDLGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGR 169 (274)
T ss_dssp CCHHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCGGGTTCCCTTTHHHHHHHHTCH
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCCCEEECcccCcccCCCccHHHHHHHHhhH
Confidence 44455566667789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 196 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
. +++++++|++|+|+||+++||||+|||++++++++.+.+...+..|..+.+..|+.
T Consensus 170 ~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~ 227 (274)
T 4fzw_C 170 ARAMGLALLGNQLSAEQAHEWGMIWQVVDDETLADTAQQLARHLATQPTFGLGLIKQA 227 (274)
T ss_dssp HHHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCcCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 89999999999999999999999999999999997777777666655555555543
|
| >3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-53 Score=369.05 Aligned_cols=205 Identities=25% Similarity=0.364 Sum_probs=186.1
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHH
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (269)
|.+|++|+|++||||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|++||+|.|+.++... ......+
T Consensus 2 vl~E~~dgVa~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~-----~~~~~~~ 76 (254)
T 3hrx_A 2 VLKERQDGVLVLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDR-----KPDYEAH 76 (254)
T ss_dssp EEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTS-----CCCHHHH
T ss_pred eEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhccc-----chhhHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999987542 2233455
Q ss_pred HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHh
Q 024298 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLA 201 (269)
Q Consensus 123 ~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ 201 (269)
.+.++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. +++|+
T Consensus 77 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~~ll 156 (254)
T 3hrx_A 77 LRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQELL 156 (254)
T ss_dssp THHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCCCEEEchhhCcCcCCcccHHHHHHHHhCcchHHHHh
Confidence 67778899999999999999999999999999999999999999999999999999999999999999999995 89999
Q ss_pred ccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 202 LTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
+||++|+|+||+++||||+|||++++++++.+.+...+..|..+.+..|++
T Consensus 157 ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~ 207 (254)
T 3hrx_A 157 LLSPRLSAEEALALGLVHRVVPAEKLMEEALSLAKELAQGPTRAYALTKKL 207 (254)
T ss_dssp HHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hcCcccCHHHHHHCCCeEEecCcHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 999999999999999999999999999997777777666655555555543
|
| >4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-52 Score=366.36 Aligned_cols=204 Identities=21% Similarity=0.289 Sum_probs=181.9
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHH
Q 024298 42 QVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKN 121 (269)
Q Consensus 42 ~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 121 (269)
.+.++++|+|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++... .....
T Consensus 6 ~l~ve~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~------~~~~~ 79 (258)
T 4fzw_A 6 ELIVSRQQRVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEK------DLAAT 79 (258)
T ss_dssp EEEEEEETTEEEEEEECGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTC------CHHHH
T ss_pred cEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccc------hhhhH
Confidence 489999999999999999999999999999999999999999999999999999999999999987542 11223
Q ss_pred HHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHH
Q 024298 122 FFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYL 200 (269)
Q Consensus 122 ~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l 200 (269)
+.+....++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++++
T Consensus 80 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~~l 159 (258)
T 4fzw_A 80 LNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKM 159 (258)
T ss_dssp HTCSHHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHH
T ss_pred HHhHHHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCCCEEECcccCCCcCCCchHHHHHHHHhCHHHHHHH
Confidence 334456788899999999999999999999999999999999999999999999999999999999999999995 8999
Q ss_pred hccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHH
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNC 251 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 251 (269)
+++|++|+|+||+++||||+|||++++++++.+.+...+..+..+.+..|+
T Consensus 160 lltg~~i~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~ 210 (258)
T 4fzw_A 160 VLSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMARHSPLALQAAKQ 210 (258)
T ss_dssp HHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHcCCcCcHHHHHHCCCeeEEeCchHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999999999999999999777666665554444444443
|
| >3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=366.14 Aligned_cols=216 Identities=25% Similarity=0.289 Sum_probs=193.5
Q ss_pred cccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChh
Q 024298 38 YLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 38 ~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
+.++.|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++..........
T Consensus 14 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 93 (279)
T 3g64_A 14 PEWRHLRVEITDGVATVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTA 93 (279)
T ss_dssp SCCSSEEEEEETTEEEEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHH
T ss_pred CCCCeEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999987654333333
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCccccccc-CCCchHHHHHhhhhHH
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFH-PDAGASFYLSHLPGYL 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~-p~~g~~~~l~r~~g~~ 196 (269)
....+.+.++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ |++|++++|++++|..
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~p~~g~~~~l~r~vG~~ 173 (279)
T 3g64_A 94 RLLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLG 173 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCSCCTTHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCCCEEeCchhhcCCCCCchhHHHHHHHHhCHH
Confidence 444566677889999999999999999999999999999999999999999999999999999 9999999999999995
Q ss_pred -HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 -GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+..
T Consensus 174 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 231 (279)
T 3g64_A 174 HATRLLMLGDTVRAPEAERIGLISELTEEGRADEAARTLARRLADGPALAHAQTKALL 231 (279)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTCCSEECCTTCHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCHHHHHHCCCCCEecCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999977777766666555555555433
|
| >3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-51 Score=360.82 Aligned_cols=213 Identities=18% Similarity=0.240 Sum_probs=188.6
Q ss_pred ccccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCCh
Q 024298 37 DYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 37 ~~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~ 116 (269)
++|++.+.++++|+|++|+||||++ |++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++... ...
T Consensus 2 ~~m~~~v~~~~~~~v~~itlnrp~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~---~~~ 77 (261)
T 3pea_A 2 NAMLKFLSVRVEDHIAVATLNHAPA-NAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSV---TEA 77 (261)
T ss_dssp --CCSSEEEEEETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTT---CCH
T ss_pred cccccceEEEEECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhc---Cch
Confidence 4578899999999999999999999 999999999999999999999999999999999999999999987543 122
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL 196 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~ 196 (269)
.....+.+..+.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 157 (261)
T 3pea_A 78 KQATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATESAKLGLPELTLGLIPGFAGTQRLPRYVGKA 157 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHH
Confidence 33344555566788899999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 -GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+..
T Consensus 158 ~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 215 (261)
T 3pea_A 158 KACEMMLTSTPITGAEALKWGLVNGVFAEETFLDDTLKVAKQIAGKSPATARAVLELL 215 (261)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999987777666666555555555443
|
| >3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=357.58 Aligned_cols=212 Identities=17% Similarity=0.239 Sum_probs=188.4
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
++.|.++++|+|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++..... ......
T Consensus 3 ~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~ 81 (268)
T 3i47_A 3 LSDLLYEIQDKVGLLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMAN-FTEEEN 81 (268)
T ss_dssp CCSEEEEEETTEEEEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHT-CCHHHH
T ss_pred CCEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhcccc-ccHHHH
Confidence 5679999999999999999999999999999999999999999999999999999999999999999876432 222333
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
......+..++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++ ++++++|.. ++
T Consensus 82 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~A~ 160 (268)
T 3i47_A 82 LEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTSARFCFSEVKLGLIPAVISP-YVVRAIGERAAK 160 (268)
T ss_dssp HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCTTTHH-HHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCCCEEECcccccCCCcccHHH-HHHHHhCHHHHH
Confidence 3455667788999999999999999999999999999999999999999999999999999999887 789999995 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++|++|+|+||+++||||+|||++++++++.+.+...+..|..+.+..|++.
T Consensus 161 ~llltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 215 (268)
T 3i47_A 161 MLFMSAEVFDATRAYSLNLVQHCVPDDTLLEFTLKYASQISNNAPEAVKNSKQLA 215 (268)
T ss_dssp HHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHcCCccCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999988777777666555555555443
|
| >3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-51 Score=358.46 Aligned_cols=214 Identities=21% Similarity=0.237 Sum_probs=191.6
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCc-cccCChhHHHHhhccCChhh
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAF-CSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F-~~G~Dl~~~~~~~~~~~~~~ 118 (269)
++.|.++++|+|++|+||||++.|++|.+++.+|.++++.++.|+++++|||||.|+.| |+|.|++++...........
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~~~ 82 (263)
T 3lke_A 3 LSYVHTEIQNDALYITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVR 82 (263)
T ss_dssp CCSEEEEECSSEEEEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSHH
T ss_pred CcEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCHHH
Confidence 56799999999999999999999999999999999999999999999999999999999 99999999876222223344
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
...+.+.++.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~~~vG~~~A 162 (263)
T 3lke_A 83 LREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGISPDLGASYFLPRIIGYEQT 162 (263)
T ss_dssp HHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCCCEEeCchHhhCCCCCccHHHHHHHHhCHHHH
Confidence 556777788899999999999999999999999999999999999999999999999999999999999999999985 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceecc-CChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTL-NGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+|+| ++++++++.+.+...+..|..+.+..|++.
T Consensus 163 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 219 (263)
T 3lke_A 163 MNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGYVPAIAATKKLL 219 (263)
T ss_dssp HHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999 999999977777666666555555555544
|
| >4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-50 Score=357.75 Aligned_cols=211 Identities=20% Similarity=0.269 Sum_probs=191.3
Q ss_pred cccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChh
Q 024298 38 YLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 38 ~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
.|++.|.++++++|++|+||||++ |++|.+|+.+|.++|+.++.|+++++|||||.|++||+|.|+.++... ...
T Consensus 21 ~m~~~v~~~~~~~Va~ItlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~----~~~ 95 (277)
T 4di1_A 21 SMNEFVSVVADQGLATLVVSRPPT-NAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTL----NAP 95 (277)
T ss_dssp --CCSEEEEEETTEEEEEECCTTT-TCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTC----CHH
T ss_pred CCCceEEEEEECCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCccccccc----ChH
Confidence 377889999999999999999999 999999999999999999999999999999999999999999998653 234
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
....+.+.++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~ 175 (277)
T 4di1_A 96 EADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPGGGGMGRLTRVVGSSR 175 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCCCEEECcccccCCCCCchHHHHHHHHhCHHH
Confidence 4556667788899999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++|+|+||+++||||+|+|++++++++.+.+...+..|..+.+..|.+.
T Consensus 176 A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 232 (277)
T 4di1_A 176 AKELVFSGRFFDAEEALALGLIDDMVAPDDVYDSAVAWARRYLECPPRALAAAKAVI 232 (277)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999988877777666665666655544
|
| >3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-50 Score=356.44 Aligned_cols=210 Identities=20% Similarity=0.294 Sum_probs=189.0
Q ss_pred ccCcEEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCCh
Q 024298 39 LQDQVLVE-GRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 39 ~~~~v~~~-~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~ 116 (269)
.++.|.++ ++|+|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++++... +.
T Consensus 6 ~~~~v~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~----~~ 81 (265)
T 3kqf_A 6 QLQNISVDYATPHVVKISLNRERQANSLSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGM----NE 81 (265)
T ss_dssp -CCSEEEECCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTC----CH
T ss_pred cCCeEEEEEeeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhcc----CH
Confidence 36789999 8999999999999999999999999999999999999999999999999 999999999987642 33
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL 196 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~ 196 (269)
.....+.+.++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 161 (265)
T 3kqf_A 82 EQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAESASLGLTETTLAIIPGAGGTQRLPRLIGVG 161 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCcEEECcccccCcCCCccHHHHHHHHhCHH
Confidence 44556677788899999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 197 -GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 197 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
+++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+.
T Consensus 162 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~ 218 (265)
T 3kqf_A 162 RAKELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKAIEIAEKIASNGPIAVRLAKEA 218 (265)
T ss_dssp HHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 89999999999999999999999999999999997777666655544444444433
|
| >4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-50 Score=367.92 Aligned_cols=229 Identities=31% Similarity=0.491 Sum_probs=200.6
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
.++.|.++++|+|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.| ++||+|+|+.++..... .+..
T Consensus 7 ~~e~vl~e~~~~Va~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~-~~~~ 85 (353)
T 4hdt_A 7 KNEDVLVNVEGGVGLLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAK-ADGA 85 (353)
T ss_dssp -CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHH-TTSH
T ss_pred CCCcEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccc-hhhH
Confidence 567899999999999999999999999999999999999999999999999999999 79999999999876533 2334
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHH
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLG 197 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a 197 (269)
....++...+.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|+|++|..+
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~iGl~p~~g~~~~l~rl~g~~a 165 (353)
T 4hdt_A 86 EARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDTTKMAMPEVGIGFIPDVGGTYLLSRAPGKLG 165 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTTCEEECCGGGGTCCCCTTHHHHHHTSSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchhccccCcccccccCCCccceehhhhhhhHHH
Confidence 45667777888999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhcc-------------------------------------
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSS------------------------------------- 240 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~------------------------------------- 240 (269)
++|++||++|+|+||+++||||+|||++++++.+...+.....
T Consensus 166 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~la~~~~~~~l~~~~~~~~~~~l~~~~~~i~~~f~~~~~~~i~~~ 245 (353)
T 4hdt_A 166 LHAALTGAPFSGADAIVMGFADHYVPHDKIDEFTRAVIADGVDAALAAHAQEPPASPLAEQRSWIDECYTGDTVADIIAA 245 (353)
T ss_dssp HHHHHHCCCBCHHHHHHHTSCSEECCGGGHHHHHHHHHHHCHHHHHHHHCBCCCCCHHHHTHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHcCCCcEEeCHHHHHHHHHHHHHhchhHHHHHhcccCCccchHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999999999999999999887765432110
Q ss_pred ----ccccHHHHHHHHhcCCccchHHHHHHhh
Q 024298 241 ----LCYSSYAAYNCFLSLPDRDFHWLRNELE 268 (269)
Q Consensus 241 ----~~~~~~~~~~~~~~~~~~~~~~~k~~l~ 268 (269)
....+....+.+.+.++.+++.+|+.++
T Consensus 246 L~~~~~~~a~~~a~~la~~sP~a~~~~k~~l~ 277 (353)
T 4hdt_A 246 LRAHDAPAAGEAADLIATRSPIALSVTLESVR 277 (353)
T ss_dssp HHHHCSHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 0111234456678888888888888764
|
| >3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-50 Score=359.41 Aligned_cols=216 Identities=19% Similarity=0.278 Sum_probs=184.2
Q ss_pred cccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCC--
Q 024298 38 YLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK-- 115 (269)
Q Consensus 38 ~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~-- 115 (269)
.|+..+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++........
T Consensus 21 ~m~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~ 100 (290)
T 3sll_A 21 SMSFVLVDRPRPEIALVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLT 100 (290)
T ss_dssp --CCEEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCC
T ss_pred CCCeEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhccccccccc
Confidence 367789999999999999999999999999999999999999999999999999999999999999998865321111
Q ss_pred -hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCC-CchHHHHHhhh
Q 024298 116 -FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPD-AGASFYLSHLP 193 (269)
Q Consensus 116 -~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~-~g~~~~l~r~~ 193 (269)
......+.+.++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+ +|++++|++++
T Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~~g~~~~L~r~v 180 (290)
T 3sll_A 101 QPTIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQDAYFRAAGINNGLTASELGLSYLLPRAI 180 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTTTTTTSCSCCTTHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCcccHHHHHHHHh
Confidence 1224556677888999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 194 GYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 194 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
|.. +++++++|++|+|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+..
T Consensus 181 G~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 241 (290)
T 3sll_A 181 GTSRASDIMLTGRDVDADEAERIGLVSRKVASESLLEECYAIGERIAGFSRPGIELTKRTI 241 (290)
T ss_dssp CHHHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 995 899999999999999999999999999999999977766666655555555555433
|
| >3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=357.76 Aligned_cols=206 Identities=22% Similarity=0.230 Sum_probs=184.0
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
.++.|.++++|+|++|+||||++.|++|.+|+.+|.++++.+ |+++++|||||.|++||+|.|++++.. .....
T Consensus 14 ~~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~--d~~vr~vVltg~g~~F~aG~Dl~~~~~----~~~~~ 87 (275)
T 3hin_A 14 DPSTLVVDTVGPVLTIGLNRPKKRNALNDGLMAALKDCLTDI--PDQIRAVVIHGIGDHFSAGLDLSELRE----RDATE 87 (275)
T ss_dssp CGGGEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHTSSC--CTTCCEEEEEESSSCSBCCBCGGGCCC----CCHHH
T ss_pred CCCeEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHh--CcCceEEEEECCCCCccCCCCHHHHhc----cChhh
Confidence 367899999999999999999999999999999999999998 578999999999999999999998753 22333
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
...+.+.++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 88 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A 167 (275)
T 3hin_A 88 GLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEASAYYALPEGSRGIFVGGGGSVRLPRLIGVARM 167 (275)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCHHHH
Confidence 345566778889999999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHH
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYN 250 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 250 (269)
++++++|++|+|+||+++||||+|||++++++++.+.+...+..+..+.+..|
T Consensus 168 ~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~ia~~~p~a~~~~K 220 (275)
T 3hin_A 168 ADMMLTGRVYSAAEGVVHGFSQYLIENGSAYDKALELGNRVAQNAPLTNFAVL 220 (275)
T ss_dssp HHHHHHCCCEEHHHHHHHTSCSEEESSSCHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHCCCCCEEeChhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999999999999999977776666655444444444
|
| >2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-50 Score=357.05 Aligned_cols=215 Identities=20% Similarity=0.228 Sum_probs=184.7
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
.++.+.++++++|++|+||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|++||+|.|++++...........
T Consensus 7 ~~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~ 86 (276)
T 2j5i_A 7 RWKTVKVEIEDGIAFVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEIL 86 (276)
T ss_dssp CCSSEEEEEETEEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCTTH
T ss_pred CCceEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchhHH
Confidence 56679999999999999999999999999999999999999999999999999999999999999998754221111111
Q ss_pred HHHHHHHHHHH-HHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 119 FKNFFETLYQF-VYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 119 ~~~~~~~~~~l-~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
...+......+ +..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 166 (276)
T 2j5i_A 87 QEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADEATFGLSEINWGIPPGNLVSKAMADTVGHRQ 166 (276)
T ss_dssp HHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETTCEEECGGGGGTCCCCTTHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHH
Confidence 22233333343 6788999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+..
T Consensus 167 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l 223 (276)
T 2j5i_A 167 SLMYIMTGKTFGGQKAAEMGLVNESVPLAQLREVTIELARNLLEKNPVVLRAAKHGF 223 (276)
T ss_dssp HHHHHHHCCEEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCcccHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999988877776655554555555443
|
| >3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-51 Score=356.09 Aligned_cols=212 Identities=21% Similarity=0.314 Sum_probs=182.9
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
.+..|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++.........
T Consensus 4 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~-- 81 (256)
T 3qmj_A 4 SMVTLQIDDDNRVRTLTLNRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNF-- 81 (256)
T ss_dssp --CCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSC--
T ss_pred CcceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhH--
Confidence 456799999999999999999999999999999999999999999999999999999999999999998764322211
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
......++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 82 -~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A 160 (256)
T 3qmj_A 82 -SEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSSTARLKCPFTSLGVAPEAASSYLLPQLVGRQNA 160 (256)
T ss_dssp -CCCSSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETTCEEECCGGGC---CCTTHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCCCEEECcccccCCCCCccHHHHHHHHhCHHHH
Confidence 11223456788899999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+..
T Consensus 161 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 216 (256)
T 3qmj_A 161 AWLLMSSEWIDAEEALRMGLVWRICSPEELLPEARRHAEILAAKPISSLMAVKHTM 216 (256)
T ss_dssp HHHHHSCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHCCCccEEeCHhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999977776666666555555555444
|
| >3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-50 Score=355.62 Aligned_cols=211 Identities=22% Similarity=0.307 Sum_probs=188.4
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
+++.|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++..... +.+.
T Consensus 26 ~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~ 103 (276)
T 3rrv_A 26 MPTEIDVRADGALRIITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSA--DADL 103 (276)
T ss_dssp CCTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHH--CHHH
T ss_pred CCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhccc--chHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999876421 2333
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
...+.+.++.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 104 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A 183 (276)
T 3rrv_A 104 RAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAENAYLADPHVQVGLVAADGGPLTWPLHISLLLA 183 (276)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCCSSHHHHGGGTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCCCEEECchhccCcCCCccHHHHHHHHhCHHHH
Confidence 455667778899999999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+|+ +++++++.+.+...+..|..+.+..|+..
T Consensus 184 ~ellltG~~i~A~eA~~~GLv~~vv--~~l~~~a~~~A~~la~~~~~a~~~~K~~l 237 (276)
T 3rrv_A 184 KEYALTGTRISAQRAVELGLANHVA--DDPVAEAIACAKKILELPQQAVESTKRVL 237 (276)
T ss_dssp HHHHHHCCCEEHHHHHHHTSCSEEE--SSHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHcCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999 88998877766666555555555555433
|
| >3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-50 Score=354.14 Aligned_cols=213 Identities=20% Similarity=0.316 Sum_probs=186.0
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
+++.|.++++|+|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++...........
T Consensus 3 ~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (266)
T 3fdu_A 3 LHPHLNANLEGGVLTLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAGP 82 (266)
T ss_dssp CCTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCSC
T ss_pred CCCeEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccchhh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999873211111110
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
.....+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. +
T Consensus 83 --~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A 160 (266)
T 3fdu_A 83 --AGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKA 160 (266)
T ss_dssp --GGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTTCEEECCTTTTTCCCCTTHHHHHHHHHCHHHH
T ss_pred --HHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECchhhhCCCCcchHHHHHHHHhCHHHH
Confidence 1223456678889999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHhcC
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFLSL 255 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (269)
++++++|++++|+||+++||||+|+| ++++++.+.+...+..|..+.+..|+....
T Consensus 161 ~~l~ltg~~i~A~eA~~~GLv~~vv~--~l~~~a~~~a~~la~~~~~a~~~~K~~l~~ 216 (266)
T 3fdu_A 161 AELLFTAKKFNAETALQAGLVNEIVE--DAYATAQATAQHLTALPLASLKQTKALMKH 216 (266)
T ss_dssp HHHHHHCCEECHHHHHHTTSCSEECS--CHHHHHHHHHHHHHTSCHHHHHHHHHHHTT
T ss_pred HHHHHhCCCcCHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999 888887777777666666666666655543
|
| >3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-50 Score=351.41 Aligned_cols=203 Identities=27% Similarity=0.333 Sum_probs=182.2
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++..
T Consensus 5 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~---------- 74 (255)
T 3p5m_A 5 MNGISVEHDGAVLRIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDT---------- 74 (255)
T ss_dssp BTTEEEEEETTEEEEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CH----------
T ss_pred CceEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcc----------
Confidence 4569999999999999999999999999999999999999999999999999999999999999998742
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
..+.+.++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 75 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~A~ 154 (255)
T 3p5m_A 75 AGAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPASYFQLAFTRVGLMPDGGASALLPLLIGRARTS 154 (255)
T ss_dssp HHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECGGGGGTCCCCTTHHHHTHHHHCHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCCcEEeCcccccCcCCCccHHHHHHHHhCHHHHH
Confidence 14456677888999999999999999999999999999999999999999999999999999999999999999995 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
+++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+.
T Consensus 155 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~ 208 (255)
T 3p5m_A 155 RMAMTAEKISAATAFEWGMISHITSADEYESVLTDVLRSVSGGPTLAFGWTKRA 208 (255)
T ss_dssp HHHHHCCCEEHHHHHHTTSCSEECCTTCHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHcCCCcCHHHHHHCCCCCEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999999999999999997777766666655555555543
|
| >3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-50 Score=356.01 Aligned_cols=214 Identities=20% Similarity=0.257 Sum_probs=190.5
Q ss_pred ccccCcEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCC
Q 024298 37 DYLQDQVLVEGRA-KSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115 (269)
Q Consensus 37 ~~~~~~v~~~~~~-~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~ 115 (269)
++.++.|.+++++ +|++|+||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++..... +
T Consensus 9 ~~~~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~--~ 85 (272)
T 3qk8_A 9 YQDFPSLRFEPGEHGVLNLVLDSPG-LNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIG--D 85 (272)
T ss_dssp GGGCTTEEEEECSTTEEEEEECCHH-HHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHH--C
T ss_pred CCCCCeEEEEEeCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhcccc--c
Confidence 3467889999986 89999999999 999999999999999999999999999999999999999999999865421 2
Q ss_pred hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH
Q 024298 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY 195 (269)
Q Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~ 195 (269)
......+.+.++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 165 (272)
T 3qk8_A 86 YEGRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASATAKIIDGHTKLGVAAGDHAAICWPLLVGM 165 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETTCEEECCHHHHTSCSCSSHHHHTHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECchhccCCCCCccHHHHHHHHhCH
Confidence 23334566677889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 196 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
. +++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|++.
T Consensus 166 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 224 (272)
T 3qk8_A 166 AKAKYYLLTCETLSGEEAERIGLVSTCVDDDEVLPTATRLAENLAQGAQNAIRWTKRSL 224 (272)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCCcEeeCHhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5 899999999999999999999999999999999977776666666555555555544
|
| >2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=349.30 Aligned_cols=206 Identities=25% Similarity=0.393 Sum_probs=177.9
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHH
Q 024298 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (269)
Q Consensus 41 ~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (269)
+.+.++++++|++|+||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|++||+|.|++++.... ..+
T Consensus 3 ~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~---~~~--- 76 (257)
T 2ej5_A 3 ETIRYEVKGQVAWLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEM---DHG--- 76 (257)
T ss_dssp SSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC----------CHH---
T ss_pred CceEEEeECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhcc---chh---
Confidence 56899999999999999999999999999999999999999999999999999999999999999875421 111
Q ss_pred HHHH-HHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 121 NFFE-TLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 121 ~~~~-~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
.+.+ .++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++
T Consensus 77 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 156 (257)
T 2ej5_A 77 DVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEKASFAPAFIHVGLVPDAGHLYYLPRLVGRAKAL 156 (257)
T ss_dssp HHHHHTHHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCTTHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCCCEEeCcccccCCCCcchHHHHHHHHhCHHHHH
Confidence 1112 256788899999999999999999999999999999999999999999999999999999999999999995 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
+++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|..
T Consensus 157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~ 210 (257)
T 2ej5_A 157 ELAVLGEKVTAEEAAALGLATKVIPLSDWEEEVKQFAERLSAMPTKAIGLIKRL 210 (257)
T ss_dssp HHHHHCCCEEHHHHHHHTCCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHhCCccCHHHHHHcCCcceecChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999999999999999999997777666655544444444443
|
| >2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-50 Score=354.27 Aligned_cols=213 Identities=21% Similarity=0.273 Sum_probs=182.8
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChh-
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE- 117 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~- 117 (269)
.++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++ +|||||.|++||+|.|++++..... ....
T Consensus 24 ~~~~i~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~~ 101 (280)
T 2f6q_A 24 GFETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPP-GGVEE 101 (280)
T ss_dssp ECSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCT-THHHH
T ss_pred CCCeEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCc-chhhH
Confidence 566799999999999999999999999999999999999999999999 9999999999999999998754211 1111
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
....+.+.+..++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 181 (280)
T 2f6q_A 102 KAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAK 181 (280)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCCcEEECchHhhCCCCcccHHHHHHHHhCHHH
Confidence 1222345567788899999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|...
T Consensus 182 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 238 (280)
T 2f6q_A 182 ATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVI 238 (280)
T ss_dssp HHHHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHCCCcceEECHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999988777766665555555555444
|
| >1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-50 Score=354.46 Aligned_cols=214 Identities=19% Similarity=0.193 Sum_probs=185.1
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhc-cCChhh
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLN-EGKFED 118 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~-~~~~~~ 118 (269)
++.+.++++++|++|+||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|++||+|.|++++..... ....+.
T Consensus 2 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 81 (269)
T 1nzy_A 2 YEAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDH 81 (269)
T ss_dssp CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHH
T ss_pred CceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHH
Confidence 3568999999999999999999999999999999999999999999999999999999999999998643100 001111
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
...+.+.++.++.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 82 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 161 (269)
T 1nzy_A 82 FRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRRA 161 (269)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCCCEEeCcccccCCCCCccHHHHHHHHhhHHHH
Confidence 124445577888899999999999999999999999999999999999999999999999999999999999999984 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|...
T Consensus 162 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l 217 (269)
T 1nzy_A 162 MELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQVMAKERF 217 (269)
T ss_dssp HHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988777666555544555555433
|
| >3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-50 Score=355.09 Aligned_cols=208 Identities=25% Similarity=0.394 Sum_probs=182.4
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
++.|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++.... ...
T Consensus 24 ~~~v~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~----~~~- 98 (278)
T 3h81_A 24 YETILVERDQRVGIITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLT----FAD- 98 (278)
T ss_dssp CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCC----HHH-
T ss_pred CCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccC----hhh-
Confidence 577999999999999999999999999999999999999999999999999999999999999999986431 111
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
.........+.++..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++
T Consensus 99 -~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~~A~ 177 (278)
T 3h81_A 99 -AFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAM 177 (278)
T ss_dssp -HHHHTTTGGGHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred -HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCCCEEECchhhcCcCCCccHHHHHHHHhCHHHHH
Confidence 1222222236788999999999999999999999999999999999999999999999999999999999999995 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|++.
T Consensus 178 ~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l 232 (278)
T 3h81_A 178 DLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAARMAKEAV 232 (278)
T ss_dssp HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHhCCCcCHHHHHHCCCccEEeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999977776666665555555555433
|
| >3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-51 Score=356.88 Aligned_cols=210 Identities=19% Similarity=0.188 Sum_probs=182.9
Q ss_pred cccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChh
Q 024298 38 YLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 38 ~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
..++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|+.||+|.|++++.........
T Consensus 9 ~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~- 87 (258)
T 3lao_A 9 SGPGRVTREQRGHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASGF- 87 (258)
T ss_dssp CSSCCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTBC-
T ss_pred CCCCeEEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchhhH-
Confidence 3677899999999999999999999999999999999999999999999999999999999999999998764322111
Q ss_pred hHHHHHHHHHHHHHHH-ccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH
Q 024298 118 DFKNFFETLYQFVYLQ-GTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i-~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~ 196 (269)
.+.+.+..++.++ .++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 88 ---~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~ 164 (258)
T 3lao_A 88 ---RYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARGTRFAHLEVLRGIPPLGGSTVRFPRAAGWT 164 (258)
T ss_dssp ---CCCTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGTCCCSSCCCCSHHHHHHCHH
T ss_pred ---HHHHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCHH
Confidence 1112233456678 899999999999999999999999999999999999999999999999999999999999995
Q ss_pred -HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHH
Q 024298 197 -GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNC 251 (269)
Q Consensus 197 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 251 (269)
+++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+
T Consensus 165 ~A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~ 220 (258)
T 3lao_A 165 DAMRYILTGDEFDADEALRMRLLTEVVEPGEELARALEYAERIARAAPLAVRAALQ 220 (258)
T ss_dssp HHHHHHTTCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHcCCCcEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8999999999999999999999999999999999777666665554444444443
|
| >2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=350.15 Aligned_cols=214 Identities=20% Similarity=0.288 Sum_probs=185.7
Q ss_pred ccCcEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEGRAKSRAAILN-RPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln-~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
.|+.+.++++++|++|+|| ||++.|++|.+|+.+|.++|+.++.|+. ++|||||.|++||+|.|++++..........
T Consensus 3 ~~~~i~~~~~~~v~~itln~rp~~~Nal~~~~~~~L~~al~~~~~d~~-r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~ 81 (261)
T 2gtr_A 3 RYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDS-KLVLLSAVGSVFCCGLDFIYFIRRLTDDRKR 81 (261)
T ss_dssp CCSSEEEEEETTEEEEEECCSSSSTTEECHHHHHHHHHHHHHHHHSSC-SCEEEEESSSCSBCEECHHHHHHHHHHCHHH
T ss_pred ccceEEEEEeCCEEEEEECCCCccCCCCCHHHHHHHHHHHHHHhcCCC-EEEEEecCCCccccccCchhhhhccccchhh
Confidence 4567999999999999999 6999999999999999999999998874 9999999999999999999876432111112
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
....+.+.++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 161 (261)
T 2gtr_A 82 ESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGAS 161 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCTTTTTCCCCTTHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCCCEEeCchhccCCCccchHHHHHHHHcCHHH
Confidence 2334445667788899999999999999999999999999999999999999999999999999999999999999984
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|++.
T Consensus 162 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l 218 (261)
T 2gtr_A 162 ANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALV 218 (261)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHCCCcccccChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999977776666555555555555444
|
| >2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=355.08 Aligned_cols=215 Identities=23% Similarity=0.296 Sum_probs=186.4
Q ss_pred cccCcEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCCh
Q 024298 38 YLQDQVLVEGRAKSRAAILN-RPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 38 ~~~~~v~~~~~~~v~~I~ln-~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~ 116 (269)
..|+.+.++++++|++|+|| ||++.|++|.+|+.+|.++|+.++.|+. ++|||||.|++||+|.|++++.........
T Consensus 20 ~~~~~v~~~~~~~v~~itln~rp~~~Nal~~~m~~~L~~al~~~~~d~~-r~vVltg~G~~FcaG~Dl~~~~~~~~~~~~ 98 (291)
T 2fbm_A 20 STYRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAGSVFCCGLDFGYFVKHLRNNRN 98 (291)
T ss_dssp -CCSSEEEEECSSEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSSC-SEEEEEECSSCSBCCBCHHHHHHHHHHCHH
T ss_pred CCcceEEEEEeCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHhcCCC-eEEEEECCCCCccCCcCHHHHHhcccccch
Confidence 35677999999999999999 6999999999999999999999998875 999999999999999999987643211111
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL 196 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~ 196 (269)
.....+...+..++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~~ 178 (291)
T 2fbm_A 99 TASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKA 178 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCCCEEECcHHhcCCCCcccHHHHHHHHHhHH
Confidence 22334445567788899999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 -GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++|+|+||+++||||+|+|++++++++.+.+...+..|..+.+..|.+.
T Consensus 179 ~A~el~ltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l 236 (291)
T 2fbm_A 179 SANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVLEECKALV 236 (291)
T ss_dssp HHHHHHTSCCEEEHHHHHHTTSCSEEECSTTSHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999977777666665555555555444
|
| >3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=344.81 Aligned_cols=208 Identities=16% Similarity=0.141 Sum_probs=181.9
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|++.|.++++++|++|+||||+ .|++|.+|+.+|.++++.+++| ++++|||||.|++||+|.|++++... +.+.
T Consensus 3 M~~~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~----~~~~ 76 (233)
T 3r6h_A 3 MSGPVTYTHDDAIGVIRMDDGK-VNVLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSG----EAKP 76 (233)
T ss_dssp --CCEEEEEETTEEEEEECCSS-SCCCSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC-------CHH
T ss_pred CCCceEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhcc----ChHH
Confidence 5567999999999999999985 6999999999999999999987 58999999999999999999998642 2334
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
...+.+..+.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +
T Consensus 77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~~~~~g~~~l~~~~g~~~a 156 (233)
T 3r6h_A 77 AIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAY 156 (233)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTTCCEECCGGGGTCCCCHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCCcEEECchhhhCCCCCccHHHHHHHHhCHHHH
Confidence 456677788899999999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+.
T Consensus 157 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~ 211 (233)
T 3r6h_A 157 QQAAGLAKTFFGETALAAGFIDEISLPEVVLSRAEEAAREFAGLNQQAHNATKLR 211 (233)
T ss_dssp HHHHHSCCEECHHHHHHHTSCSEECCGGGHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHcCCcCCHHHHHHcCCCcEeeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999996666555555544455444443
|
| >3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=356.42 Aligned_cols=211 Identities=21% Similarity=0.250 Sum_probs=180.7
Q ss_pred CccccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCC
Q 024298 36 NDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115 (269)
Q Consensus 36 ~~~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~ 115 (269)
++.+++.|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++.......
T Consensus 6 ~~~~m~~v~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~- 84 (262)
T 3r9q_A 6 SEEMQPAVRVEKAGPVTTVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNE- 84 (262)
T ss_dssp ----CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCC-
T ss_pred CcccCCEEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhh-
Confidence 3445667999999999999999999999999999999999999999999999999999999999999999876532111
Q ss_pred hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH
Q 024298 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY 195 (269)
Q Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~ 195 (269)
... .....+...+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 85 ~~~-----~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 159 (262)
T 3r9q_A 85 LHP-----HGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEEDAVLGVFCRRWGVPLIDGGTIRLPRLIGH 159 (262)
T ss_dssp CCT-----TSSCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECTHHHHTCCCCSSHHHHHHHHHCH
T ss_pred HHH-----hhhhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCCCEEecchhccCCCCCccHHHHHHHHhCH
Confidence 000 011223445679999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 196 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
. +++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+.
T Consensus 160 ~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~ 217 (262)
T 3r9q_A 160 SRAMDLILTGRPVHANEALDIGLVNRVVARGQAREAAETLAAEIAAFPQQCVRADRDS 217 (262)
T ss_dssp HHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCCHHHHHHcCCccEecChhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5 89999999999999999999999999999999997777766666555555555543
|
| >3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-50 Score=359.02 Aligned_cols=215 Identities=14% Similarity=0.118 Sum_probs=186.2
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCC-h
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGK-F 116 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~-~ 116 (269)
.++.|.++++|+|++||||||+ .|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|+.++........ .
T Consensus 7 ~~~~i~~~~~~~va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~ 85 (287)
T 3gkb_A 7 AYSTLRVSSEHGVARIILDNPP-VNVIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELA 85 (287)
T ss_dssp CCSSEEEEEETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHH
T ss_pred CCCeEEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhh
Confidence 5778999999999999999998 7999999999999999999999999999999998 79999999998753210000 0
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeC-CceEecCcccccccCCCchHHHHHhhhhH
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTD-KTVFSNPETQMGFHPDAGASFYLSHLPGY 195 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~ 195 (269)
.......+.++.++..+.++||||||+|||+|+|||++|+++||+|||++ +++|++||+++|++|++|++++|++++|.
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~ 165 (287)
T 3gkb_A 86 ASAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGTQYLRGRVGR 165 (287)
T ss_dssp HTSCTTCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECGGGGGTSCCCSSHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCCchHHHHHHHHhCH
Confidence 00011223456788899999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred H-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHhc
Q 024298 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFLS 254 (269)
Q Consensus 196 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (269)
. |++++++|++|+|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+...
T Consensus 166 ~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~~~K~~l~ 225 (287)
T 3gkb_A 166 NRALEVVLTADLFDAETAASYGWINRALPADELDEYVDRVARNIAALPDGVIEAAKRSLP 225 (287)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCTTHHHHHHHHSC
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCCcEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5 8999999999999999999999999999999999877777776666666666666554
|
| >2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-49 Score=348.10 Aligned_cols=209 Identities=18% Similarity=0.198 Sum_probs=184.7
Q ss_pred cccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CCCCccccCChhHHHHhhccCCh
Q 024298 38 YLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG-AGRAFCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 38 ~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg-~g~~F~~G~Dl~~~~~~~~~~~~ 116 (269)
..++.+.++++++|++|+|||| +.|++|.+|+.+|.++|+.++.|+++++||||| .|++||+|.|+.++.. ..
T Consensus 6 ~~~~~i~~~~~~~v~~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~----~~- 79 (265)
T 2ppy_A 6 TKKQYLTVFKEDGIAEIHLHIN-KSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRS----AD- 79 (265)
T ss_dssp EECSSEEEEEETTEEEEEECSS-TTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTT----SC-
T ss_pred CCCCeEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhc----cc-
Confidence 3567899999999999999999 899999999999999999999999999999999 8999999999998753 11
Q ss_pred hhHHHHHHHH-HHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCc-eEecCcccccccCCCchHHHHHhhhh
Q 024298 117 EDFKNFFETL-YQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKT-VFSNPETQMGFHPDAGASFYLSHLPG 194 (269)
Q Consensus 117 ~~~~~~~~~~-~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a-~f~~pe~~~Gl~p~~g~~~~l~r~~g 194 (269)
.....+.+.+ +.++.++.++||||||+|||+|+|||++|+++||+|||++++ +|++||+++|++|++|++++|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~ag~f~~pe~~~Gl~p~~g~~~~l~~~vG 159 (265)
T 2ppy_A 80 PRFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLARLIG 159 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETTCCCEECCGGGGTCCCTTTHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCCCCEEECcccccCCCCCchHHHHHHHHhC
Confidence 1223344556 778889999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 195 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
.. +++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|..
T Consensus 160 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~ 218 (265)
T 2ppy_A 160 YSRALDMNITGETITPQEALEIGLVNRVFPQAETRERTREYARKLANSATYAVSNIKLA 218 (265)
T ss_dssp HHHHHHHHHHCCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 85 89999999999999999999999999999999998777766655544444444443
|
| >3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-50 Score=351.31 Aligned_cols=208 Identities=21% Similarity=0.281 Sum_probs=184.7
Q ss_pred cCcEEEEEeCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 40 QDQVLVEGRAK-SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 40 ~~~v~~~~~~~-v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
++.+.++++++ |++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++... ....
T Consensus 8 ~~~i~~~~~~~gv~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~~ 83 (263)
T 3moy_A 8 YTTIATSRPVAGVGLIRLDRPDALNALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTL----TPHQ 83 (263)
T ss_dssp CSSEEEECCSTTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTC----CHHH
T ss_pred CCeEEEEEeCCeEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhcc----Cchh
Confidence 56799999998 999999999999999999999999999999999999999999999999999999987542 1111
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
.+.+.+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 84 --~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~A 161 (263)
T 3moy_A 84 --ARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADTARFGQPEITLGILPGLGGTQRLTRAVGKAKA 161 (263)
T ss_dssp --HHHTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCSSSTTTHHHHHHCHHHH
T ss_pred --HHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCCCEEeCcccccCCCCchhHHHHHHHHhCHHHH
Confidence 2234456678899999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+|+|++++++++.+.+...+..+..+.+..|+..
T Consensus 162 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 217 (263)
T 3moy_A 162 MDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEALAVAQRIARMSRPAGRAVKDAI 217 (263)
T ss_dssp HHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHCCCccEecCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999988777666665555555555443
|
| >1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=352.26 Aligned_cols=213 Identities=20% Similarity=0.259 Sum_probs=183.8
Q ss_pred cCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccC---C
Q 024298 40 QDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG---K 115 (269)
Q Consensus 40 ~~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~---~ 115 (269)
|+.+.+++ +++|++|+||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|++||+|.|++++....... +
T Consensus 2 ~~~v~~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~ 81 (275)
T 1dci_A 2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDD 81 (275)
T ss_dssp CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSS
T ss_pred CceEEEEEcCCCEEEEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccch
Confidence 45688998 6789999999999999999999999999999999999999999999999999999999886532111 1
Q ss_pred h----hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHh
Q 024298 116 F----EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSH 191 (269)
Q Consensus 116 ~----~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r 191 (269)
. .....+.+.++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r 161 (275)
T 1dci_A 82 VARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPK 161 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGG
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCCCEEeCcccccCCCCCccHHHHHHH
Confidence 1 112233455677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhH-H-HHHHhccCCCCCHHHHHhcCccceeccC-ChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 192 LPGY-L-GEYLALTGEKLNGVEMIACGLATHYTLN-GVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 192 ~~g~-~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
++|. . +++++++|++++|+||+++||||+|+|+ +++++++.+.+...+..|..+.+..|.+
T Consensus 162 ~vG~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~p~a~~~~K~~ 225 (275)
T 1dci_A 162 VIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKIN 225 (275)
T ss_dssp TCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9997 5 8999999999999999999999999999 9999987776666655544455444443
|
| >2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-49 Score=344.52 Aligned_cols=206 Identities=20% Similarity=0.287 Sum_probs=181.2
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CCCCccccCChhHHHHhhccCChhhHHH
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG-AGRAFCSGGDVIALYQLLNEGKFEDFKN 121 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg-~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 121 (269)
+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++||||| .|++||+|.|++++.... ..+....
T Consensus 2 v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~---~~~~~~~ 78 (250)
T 2a7k_A 2 VFEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLS---RSEDIEE 78 (250)
T ss_dssp EEEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC----CHHHHHH
T ss_pred eEEEeeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcC---chhhHHH
Confidence 678899999999999999999999999999999999999999999999999 899999999999875421 1121134
Q ss_pred HHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHH
Q 024298 122 FFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYL 200 (269)
Q Consensus 122 ~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l 200 (269)
+.+.++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++ +|++++|.. ++++
T Consensus 79 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~-~l~~~vG~~~a~~l 157 (250)
T 2a7k_A 79 WIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGAA-ILGFTHGFSTMQEI 157 (250)
T ss_dssp HHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHHH-HHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCcHHH-HHHHHhHHHHHHHH
Confidence 45567788899999999999999999999999999999999999999999999999999999999 999999985 8999
Q ss_pred hccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
+++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|..
T Consensus 158 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~ 209 (250)
T 2a7k_A 158 IYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFINTKRA 209 (250)
T ss_dssp HHHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHcCCcccHHHHHHcCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999997776666555544444444443
|
| >3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-49 Score=351.72 Aligned_cols=208 Identities=19% Similarity=0.268 Sum_probs=187.4
Q ss_pred CcEEEEEe--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 41 DQVLVEGR--AKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 41 ~~v~~~~~--~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
..|.++++ ++|++|+||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|++||+|.|++++.. ....+.
T Consensus 24 ~~v~~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~---~~~~~~ 100 (286)
T 3myb_A 24 EPLLLQDRDERGVVTLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRA---EPSREY 100 (286)
T ss_dssp CCSEEEEECTTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHS---SCCHHH
T ss_pred eeEEEEEecCCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhc---cccHHH
Confidence 33899999 9999999999999999999999999999999999999999999999999999999999865 233445
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
...+.+.++.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|++++|.. +
T Consensus 101 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~lGl~-~~g~~~~L~r~vG~~~A 179 (286)
T 3myb_A 101 YEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRDARFAVSGINVGLF-CSTPGVALSRNVGRKAA 179 (286)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCC-CHHHHHHHTTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCCCEEECcccccCCC-CchHHHHHHHHcCHHHH
Confidence 56677788899999999999999999999999999999999999999999999999999999 788899999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+.
T Consensus 180 ~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~ 234 (286)
T 3myb_A 180 FEMLVTGEFVSADDAKGLGLVNRVVAPKALDDEIEAMVSKIVAKPRAAVAMGKAL 234 (286)
T ss_dssp HHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999999999999999997777766655555455554443
|
| >1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-49 Score=350.12 Aligned_cols=214 Identities=18% Similarity=0.139 Sum_probs=180.7
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCC---h
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK---F 116 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~---~ 116 (269)
|+.+.++++++|++||||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|++||+|.|+.++........ .
T Consensus 8 ~~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~ 87 (280)
T 1pjh_A 8 NEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYP 87 (280)
T ss_dssp BTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCS
T ss_pred CCceEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhcccccccchh
Confidence 5779999999999999999999999999999999999999999999999999999999999999998754211110 0
Q ss_pred hh----HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEe-CCceEecCcccccccCCCchHHHHHh
Q 024298 117 ED----FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVT-DKTVFSNPETQMGFHPDAGASFYLSH 191 (269)
Q Consensus 117 ~~----~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~-~~a~f~~pe~~~Gl~p~~g~~~~l~r 191 (269)
+. ...++...+.++..+..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|++|++++|++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~a~f~~pe~~lGl~p~~g~~~~l~r 167 (280)
T 1pjh_A 88 SETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPL 167 (280)
T ss_dssp SHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCCCEEeCchhhcCCCCCccHHHHHHH
Confidence 11 11222334577889999999999999999999999999999999999 99999999999999999999999999
Q ss_pred hhhHH-HHHHhccCCCCCHHHHHhcCccceeccCC-----hHHHHHH-HhhhhhccccccHHHHHHHHh
Q 024298 192 LPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNG-----VRYTALY-FTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 192 ~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~-----~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++|.. +++++++|++|+|+||+++||||+|+|++ ++++++. +.+...+..|..+.+..|++.
T Consensus 168 ~vG~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~la~~~~~a~~~~K~~l 236 (280)
T 1pjh_A 168 KFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLYLPSCLGMKKLL 236 (280)
T ss_dssp HHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99995 89999999999999999999999999986 7887753 555555555444555555444
|
| >3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-49 Score=342.09 Aligned_cols=206 Identities=13% Similarity=0.062 Sum_probs=181.2
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|++.+.++++++|++||||||+ .|++|.+|+.+|.++++.++.| +++|||||.|++||+|.|++++... .+.
T Consensus 4 M~~~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d--~~~vvltg~g~~F~aG~Dl~~~~~~-----~~~ 75 (232)
T 3ot6_A 4 MSDLVSYHLDDGVATLTLNNGK-VNAISPDVIIAFNAALDQAEKD--RAIVIVTGQPGILSGGYDLKVMTSS-----AEA 75 (232)
T ss_dssp HHHHEEEEEETTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHHT--TCEEEEECBTEEEECCBCHHHHHHC-----HHH
T ss_pred cccceEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcC--CCEEEEECCCCCccCCcCHHHHhhC-----hHH
Confidence 5667999999999999999985 6999999999999999999976 4899999999999999999998652 233
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC-ceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
..++.+.++.++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++++++++++++|..
T Consensus 76 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig~~~ 155 (232)
T 3ot6_A 76 AINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSA 155 (232)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhCHHH
Confidence 4566777788999999999999999999999999999999999999998 89999999999998888889999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
+++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+.
T Consensus 156 a~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~ 211 (232)
T 3ot6_A 156 FNRSVINAEMFDPEGAMAAGFLDKVVSVEELQGAALAVAAQLKKINMNAHKKTKLK 211 (232)
T ss_dssp HHHHHTSCCEECHHHHHHHTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHcCCccCHHHHHHCCCCCEecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 89999999999999999999999999999999996665555555544444444433
|
| >3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-50 Score=358.85 Aligned_cols=214 Identities=20% Similarity=0.212 Sum_probs=174.7
Q ss_pred ccCcEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHh--hccCC
Q 024298 39 LQDQVLVEGRA-KSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQL--LNEGK 115 (269)
Q Consensus 39 ~~~~v~~~~~~-~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~--~~~~~ 115 (269)
.++.|.+++++ +|++|+||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|++||+|.|+.++... .....
T Consensus 27 ~~~~v~~~~~~~~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~ 106 (298)
T 3qre_A 27 AQDAVLYEATPGGVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTM 106 (298)
T ss_dssp -CCSEEEEECTTSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC---------------
T ss_pred CCCeEEEEEeCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccccccc
Confidence 46779999999 9999999999999999999999999999999999999999999999999999999987641 11110
Q ss_pred h--hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhh
Q 024298 116 F--EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLP 193 (269)
Q Consensus 116 ~--~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~ 193 (269)
. .....+......++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~v 186 (298)
T 3qre_A 107 AKAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAGAKFAAVFARRGLIAEFGISWILPRLT 186 (298)
T ss_dssp --------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETTCEEECCCCHHHHHCTTSHHHHHHHHS
T ss_pred ccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCCCEEECcccccCCCcchhHHHHHHHhc
Confidence 0 01122233345677789999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccc-cccHHHHHHHH
Q 024298 194 GYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSL-CYSSYAAYNCF 252 (269)
Q Consensus 194 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~ 252 (269)
|.. +++++++|++++|+||+++||||+|+|++++++++.+.+...+.. |..+.+..|+.
T Consensus 187 G~~~A~ellltg~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~p~a~~~~K~~ 247 (298)
T 3qre_A 187 SWAVALDLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRALEYAEDIARYCSPSSMAVIKRQ 247 (298)
T ss_dssp CHHHHHHHHHHCCEEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCCeEecCHHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 995 899999999999999999999999999999999988877776654 44455554443
|
| >3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-50 Score=353.20 Aligned_cols=209 Identities=17% Similarity=0.212 Sum_probs=180.3
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
.++.|.++++++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|+.||+|.|++++..........
T Consensus 7 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~- 85 (265)
T 3swx_A 7 DYETLRIRRDGYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGASL- 85 (265)
T ss_dssp CCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--CCC-
T ss_pred CCceEEEEEECCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchhHH-
Confidence 3678999999999999999999999999999999999999999999999999999999999999999987643211111
Q ss_pred HHHHHHHHHHHHHHH-ccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 119 FKNFFETLYQFVYLQ-GTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i-~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
+.+.+..++..+ .++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 86 ---~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 162 (265)
T 3swx_A 86 ---TPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADETATFAQLEVNRGIYPFGGATIRFPRTAGWGN 162 (265)
T ss_dssp ---CCTTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTSCCCSSHHHHHHHHHCHHH
T ss_pred ---HHHHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCCCEEECcccccccCCCccHHHHHHHHhhHHH
Confidence 111223345677 899999999999999999999999999999999999999999999999999999999999985
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHH
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNC 251 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 251 (269)
+++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+
T Consensus 163 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~ 217 (265)
T 3swx_A 163 AMRWMLTADTFDAVEAHRIGIVQEIVPVGEHVDTAIAIAQTIARQAPLGVQATLR 217 (265)
T ss_dssp HHHHHTTCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHcCCcCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8999999999999999999999999999999999776665555554444444443
|
| >3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-50 Score=350.28 Aligned_cols=200 Identities=22% Similarity=0.298 Sum_probs=175.7
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
.++.+.++++|+|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++...
T Consensus 7 ~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~-------- 78 (256)
T 3pe8_A 7 DSPVLLVDTTDRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDT-------- 78 (256)
T ss_dssp -CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC-----------
T ss_pred CCCcEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhh--------
Confidence 466799999999999999999999999999999999999999999999999999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
..+..+...+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 79 -----~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~A 153 (256)
T 3pe8_A 79 -----TELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASENAKFADTHARVGLMPTWGLSVRLPQKVGVGLA 153 (256)
T ss_dssp -----------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSSHHHHHHHHHCHHHH
T ss_pred -----HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCCCEEECchhhhCCCCcccHHHHHHHhcCHHHH
Confidence 1122344678999999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHH
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNC 251 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 251 (269)
++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+
T Consensus 154 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~ 207 (256)
T 3pe8_A 154 RRMSLTGDYLSAQDALRAGLVTEVVAHDDLLTAARRVAASIVGNNQKAVRALLD 207 (256)
T ss_dssp HHHHHHCCCEEHHHHHHHTSCSCEECGGGHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHCCCCeEEeCHhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999777666665554444444443
|
| >2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-49 Score=346.34 Aligned_cols=206 Identities=19% Similarity=0.244 Sum_probs=180.6
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
+..+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++... ... .
T Consensus 4 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~-~ 78 (258)
T 2pbp_A 4 FVSIAARQEGAVGIIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKD----DPI-R 78 (258)
T ss_dssp CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTC----CHH-H
T ss_pred cceEEEEeeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcc----cch-h
Confidence 45688999999999999999999999999999999999999999999999999999999999999987542 111 1
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
..+...+ .++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.. ++
T Consensus 79 ~~~~~~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~ 157 (258)
T 2pbp_A 79 LEWLNQF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSAAEFGFPEVNLGVMPGAGGTQRLTKLIGPKRAL 157 (258)
T ss_dssp HHHHCTT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHHHHH
T ss_pred HHHHHHH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCcccHHHHHHHHhCHHHHH
Confidence 2222333 567789999999999999999999999999999999999999999999999999999999999999985 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHH
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNC 251 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 251 (269)
+++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+
T Consensus 158 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~ 210 (258)
T 2pbp_A 158 EWLWTGARMSAKEAEQLGIVNRVVSPELLMEETMRLAGRLAEQPPLALRLIKE 210 (258)
T ss_dssp HHHHHCCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHcCCccCHHHHHHcCCcceeeChHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999999999999999777666665554444444443
|
| >3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-50 Score=355.85 Aligned_cols=214 Identities=20% Similarity=0.243 Sum_probs=178.5
Q ss_pred cccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhc--cC-
Q 024298 38 YLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLN--EG- 114 (269)
Q Consensus 38 ~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~--~~- 114 (269)
.|++.|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++..... ..
T Consensus 8 ~m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 87 (274)
T 3tlf_A 8 DSFDTIKYEVDGHTATITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYER 87 (274)
T ss_dssp CCCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------
T ss_pred CcCCceEEEEECCEEEEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhcccccccc
Confidence 477889999999999999999999999999999999999999999999999999999999999999998865322 00
Q ss_pred ChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhh
Q 024298 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194 (269)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g 194 (269)
........+..++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++| +|++++|++++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p-~g~~~~L~r~vG 166 (274)
T 3tlf_A 88 PYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQATFFDPHVSIGLVA-GRELVRVSRVLP 166 (274)
T ss_dssp CTTCSGGGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETTCEEECCGGGGTCCC-CHHHHHHTTTSC
T ss_pred chhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCccc-chHHHHHHHHhC
Confidence 0000011122345567789999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HH-HHHHhccCC--CCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 195 YL-GEYLALTGE--KLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 195 ~~-a~~l~ltG~--~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
.. +++++++|+ +++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+.
T Consensus 167 ~~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~ 227 (274)
T 3tlf_A 167 RSIALRMALMGKHERMSAQRAYELGLISEIVEHDRLLERAHEIADIVNSNAPLAVRGTRLA 227 (274)
T ss_dssp HHHHHHHHHHGGGCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHCCCCCeecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 95 899999999 99999999999999999999999997777766665555455555543
|
| >3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-49 Score=359.41 Aligned_cols=214 Identities=18% Similarity=0.216 Sum_probs=181.3
Q ss_pred cCcEEEEEe--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-------CccccCChhHHHHh
Q 024298 40 QDQVLVEGR--AKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGR-------AFCSGGDVIALYQL 110 (269)
Q Consensus 40 ~~~v~~~~~--~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~-------~F~~G~Dl~~~~~~ 110 (269)
++.|.++++ ++|++|+||||+++|+||.+|+.+|.++|+.++.|+++++|||||.|+ +||+|.|++++...
T Consensus 54 ~~~i~~~~~~~~gVa~ItlnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~ 133 (334)
T 3t8b_A 54 LTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRS 133 (334)
T ss_dssp CSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC--
T ss_pred CceEEEEEeccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcc
Confidence 678999987 999999999999999999999999999999999999999999999995 89999999876421
Q ss_pred hc---cC----ChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEe-CCceEecCcccccccCC
Q 024298 111 LN---EG----KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVT-DKTVFSNPETQMGFHPD 182 (269)
Q Consensus 111 ~~---~~----~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~-~~a~f~~pe~~~Gl~p~ 182 (269)
.. .. ..+........+..++..|..+||||||+|||+|+|||++|+++||+|||+ ++++|++||+++|++|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~A~f~~pe~~lGl~p~ 213 (334)
T 3t8b_A 134 GYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDG 213 (334)
T ss_dssp --------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCCTTCSSSSC
T ss_pred cccccccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCCcEEECcccccCCCCc
Confidence 10 00 001111122235567888999999999999999999999999999999999 99999999999999999
Q ss_pred CchHHHHHhhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 183 AGASFYLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 183 ~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+|++++|++++|.. |++++++|++|+|+||+++||||+|||++++++++.+.+...+..+..+.+..|...
T Consensus 214 ~gg~~~L~r~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~ia~~~p~a~~~~K~~l 285 (334)
T 3t8b_A 214 GYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQRMLKFAF 285 (334)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHhhHHHHHHHHHhCCcCCHHHHHHCCCCcEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999995 899999999999999999999999999999999988777766665555555555443
|
| >3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-49 Score=348.48 Aligned_cols=212 Identities=18% Similarity=0.196 Sum_probs=183.4
Q ss_pred cCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhh--ccCCh
Q 024298 40 QDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLL--NEGKF 116 (269)
Q Consensus 40 ~~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~--~~~~~ 116 (269)
++.+.++. +++|++|+||||++ |++|.+|+.+|.++++.++.|+++|+|||||.|++||+|.|++++.... .....
T Consensus 5 ~~~~~~~~~~~~v~~itlnrP~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 83 (263)
T 3l3s_A 5 QDGLLGEVLSEGVLTLTLGRAPA-HPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGR 83 (263)
T ss_dssp ---CEEEEESSSEEEEEECSTTT-CCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSH
T ss_pred ccceEEEEeeCCEEEEEECCCCC-CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccH
Confidence 34566666 89999999999999 9999999999999999999999999999999999999999999875431 12234
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL 196 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~ 196 (269)
.....+.+.++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++ ++|++++|++++|..
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~-~~g~~~~l~r~vG~~ 162 (263)
T 3l3s_A 84 AFVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPAARFCLPGVQNGGF-CTTPAVAVSRVIGRR 162 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTTCEEECCTTTTTSC-CHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCCCEEeCchhccCCC-CccHHHHHHHHcCHH
Confidence 4556677788899999999999999999999999999999999999999999999999999999 567899999999995
Q ss_pred -HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 -GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+..
T Consensus 163 ~A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 220 (263)
T 3l3s_A 163 AVTEMALTGATYDADWALAAGLINRILPEAALATHVADLAGALAARNQAPLRRGLETL 220 (263)
T ss_dssp HHHHHHHHCCEEEHHHHHHHTSSSEECCHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHCCCccEEeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999977776666555555555555443
|
| >3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-49 Score=358.47 Aligned_cols=223 Identities=17% Similarity=0.156 Sum_probs=181.1
Q ss_pred cccCCCCCCCccccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhH
Q 024298 27 FSALPDYSSNDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIA 106 (269)
Q Consensus 27 ~~~~~~~~~~~~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~ 106 (269)
++..+.+. +...|+.|.++++++|++|+||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|++||+|.|+.+
T Consensus 22 ~~~~~~~~-~~~~~~~i~~e~~~~Va~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~ 100 (333)
T 3njd_A 22 MTHAIRPV-DFDNLKTMTYEVTDRVARITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSA 100 (333)
T ss_dssp -------C-CTTSCSSEEEEEETTEEEEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC---
T ss_pred ccCCCCCC-CCCCCCeEEEEEECCEEEEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHH
Confidence 55544433 44578899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCC------------------------h--hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCC
Q 024298 107 LYQLLNEGK------------------------F--EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGM 160 (269)
Q Consensus 107 ~~~~~~~~~------------------------~--~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD 160 (269)
+........ + .....+...+..++..+.++||||||+|||+|+|||++|+++||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD 180 (333)
T 3njd_A 101 YAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHAD 180 (333)
T ss_dssp ------------CCTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSS
T ss_pred HhhcccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCC
Confidence 765321110 0 01234456677788899999999999999999999999999999
Q ss_pred EEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhc
Q 024298 161 YRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVS 239 (269)
Q Consensus 161 ~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~ 239 (269)
+|||+++++|++||+++|++|++| ++++++|.. +++|+++|++|+|+||+++||||+|||++++++++.+.+...+
T Consensus 181 ~rias~~a~f~~pe~~lG~~P~~g---~l~~~vG~~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~ia 257 (333)
T 3njd_A 181 QVIAAADAKIGYPPMRVWGVPAAG---LWAHRLGDQRAKRLLFTGDCITGAQAAEWGLAVEAPDPADLDARTERLVERIA 257 (333)
T ss_dssp EEEECTTCEEECGGGGTTCCCTTC---CHHHHHCHHHHHHHHTTCCEEEHHHHHHTTSSSBCCCGGGHHHHHHHHHHHHH
T ss_pred EEEECCCCeeechhhceeccCHHH---HHHHHHHHHHHHHHHhcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHH
Confidence 999999999999999999999886 478899995 8999999999999999999999999999999999777776666
Q ss_pred cccccHHHHHHHHh
Q 024298 240 SLCYSSYAAYNCFL 253 (269)
Q Consensus 240 ~~~~~~~~~~~~~~ 253 (269)
..|..+.+..|.+.
T Consensus 258 ~~~~~al~~~K~~l 271 (333)
T 3njd_A 258 AMPVNQLIMAKLAC 271 (333)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 66665666655544
|
| >1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-49 Score=347.39 Aligned_cols=210 Identities=20% Similarity=0.233 Sum_probs=183.0
Q ss_pred ccCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
.++.+.+++ +++|++|+||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++ +..... .+.+
T Consensus 8 ~~~~v~~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~~~~-~~~~ 84 (264)
T 1wz8_A 8 RYPGLAFAWPRPGVLEITFRGEK-LNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFG-LIEEMR-ASHE 84 (264)
T ss_dssp HCTTEEEEEEETTEEEEEECCSG-GGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHH-HHHHHH-HCHH
T ss_pred CCCeEEEEEccCCEEEEEeCCCC-cCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccc-cccccc-cchH
Confidence 345699999 9999999999999 99999999999999999999999999999999999999999999 654211 0111
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
....+.+.++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 164 (264)
T 1wz8_A 85 ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAK 164 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCCCEEeCchhhcCcCCCccHHHHHHHHhCHHH
Confidence 2233456677888999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHH
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNC 251 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 251 (269)
+++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|.
T Consensus 165 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~ 219 (264)
T 1wz8_A 165 AKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALHHTKH 219 (264)
T ss_dssp HHHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHCCCceeecChhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8999999999999999999999999999999999777666665554444444443
|
| >3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-49 Score=347.85 Aligned_cols=208 Identities=25% Similarity=0.269 Sum_probs=175.7
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
.++.|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++ ... .. .
T Consensus 7 ~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~-~~~---~~---~ 79 (265)
T 3rsi_A 7 AARELLVERDGPVVILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLS-DGW---MV---R 79 (265)
T ss_dssp --CCEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC----------------
T ss_pred CCCcEEEEEECCEEEEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCC-ccc---cc---c
Confidence 4678999999999999999999999999999999999999999999999999999999999999998 211 11 1
Q ss_pred HHHHHHHHHH-HHHHH-c--cCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhh
Q 024298 119 FKNFFETLYQ-FVYLQ-G--TFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194 (269)
Q Consensus 119 ~~~~~~~~~~-l~~~i-~--~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g 194 (269)
...+.+.... ++..+ . .+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG 159 (265)
T 3rsi_A 80 DGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEHATFGLPEVQRGLVPGAGSMVRLKRQIP 159 (265)
T ss_dssp -----CCCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHSC
T ss_pred hHHHHHHhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCCCEEECchhccCCCCCccHHHHHHHHhC
Confidence 1122223345 77888 8 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 195 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
.. +++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|++.
T Consensus 160 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 219 (265)
T 3rsi_A 160 YTKAMEMILTGEPLTAFEAYHFGLVGHVVPAGTALDKARSLADRIVRNGPLAVRNAKEAI 219 (265)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHTTSCSEEESTTCHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCccEecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 95 899999999999999999999999999999999977766666655555555555433
|
| >3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-50 Score=355.19 Aligned_cols=210 Identities=21% Similarity=0.317 Sum_probs=182.4
Q ss_pred cccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChh
Q 024298 38 YLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 38 ~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
.|++.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++..........
T Consensus 4 ~m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~ 83 (265)
T 3qxz_A 4 SMVTELHEEIRDGVAVLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNP 83 (265)
T ss_dssp --CCEEEEEEETTEEEEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCSS
T ss_pred CccceEEEEEECCEEEEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999876532111111
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
.+.. +.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 84 ----~~~~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 158 (265)
T 3qxz_A 84 ----DFSA-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEEGRYAIPQVRFGVAPDALAHWTLPRLVGTAV 158 (265)
T ss_dssp ----CCCS-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCCEECCGGGGTSCCCTTHHHHTHHHHHHHH
T ss_pred ----HHHH-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCCCEEECcccccCcCCCccHHHHHHHHhCHHH
Confidence 1112 4567789999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccc-cccHHHHHHHH
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSL-CYSSYAAYNCF 252 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~ 252 (269)
+++++++|++++|+||+++||||+|+|++++++++.+.+...+.. |..+.+..|+.
T Consensus 159 A~~l~ltg~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~p~a~~~~K~~ 215 (265)
T 3qxz_A 159 AAELLLTGASFSAQRAVETGLANRCLPAGKVLGAALRMAHDIATNVAPESAALTKRL 215 (265)
T ss_dssp HHHHHHHCCCBCHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHcCCCcCHHHHHHCCCccEeeCHHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 899999999999999999999999999999999977766666554 44444444433
|
| >2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-49 Score=350.78 Aligned_cols=209 Identities=17% Similarity=0.209 Sum_probs=185.0
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
...+.++++++|++|+||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|++||+|.|++++... .+.+..
T Consensus 32 ~~~v~~~~~~~V~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~---~~~~~~ 108 (287)
T 2vx2_A 32 PRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEE---QGRDYH 108 (287)
T ss_dssp CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGG---GCHHHH
T ss_pred CcceEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcc---cchhHH
Confidence 45699999999999999999999999999999999999999999999999999999999999999886432 112233
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
..+.+.++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|+++ |++++|.. ++
T Consensus 109 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~p~~g~~~-L~r~vG~~~A~ 187 (287)
T 2vx2_A 109 AEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVA-LARAVPRKVAL 187 (287)
T ss_dssp HHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCHHHHHH-HHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCCCEEECchhhhCCCCchHHHH-HHHHhhHHHHH
Confidence 44556677888999999999999999999999999999999999999999999999999999999999 99999984 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
+++++|++++|+||+++||||+|||++++++++.+.+...+..|..+.+..|+.
T Consensus 188 ~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~ 241 (287)
T 2vx2_A 188 EMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKAT 241 (287)
T ss_dssp HHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHCCCcceecCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999999998877776665555555555544
|
| >4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-49 Score=350.83 Aligned_cols=212 Identities=19% Similarity=0.197 Sum_probs=180.5
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-----CC-CCccccCChhHHHHhhc
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG-----AG-RAFCSGGDVIALYQLLN 112 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg-----~g-~~F~~G~Dl~~~~~~~~ 112 (269)
.++.|.++++|+|++|+||||++.|++|.+|+.+|.++++.++.|+++++||||| .| ++||+|.|++++....
T Consensus 8 ~~~~v~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~- 86 (275)
T 4eml_A 8 HYDDILYYKAGGIAKIVINRPHKRNAFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGG- 86 (275)
T ss_dssp ECSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC-------
T ss_pred CCceEEEEEECCEEEEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhccc-
Confidence 4677999999999999999999999999999999999999999999999999999 88 5999999999875411
Q ss_pred cCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhh
Q 024298 113 EGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHL 192 (269)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ 192 (269)
..+........+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|+++
T Consensus 87 --~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~~g~~~L~r~ 164 (275)
T 4eml_A 87 --YIDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADNAIFGQTGPKVGSFDGGFGSSYLARI 164 (275)
T ss_dssp ----------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHH
T ss_pred --ccchhhHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHH
Confidence 000001111124567888999999999999999999999999999999999999999999999999988889999999
Q ss_pred hhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 193 PGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 193 ~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+|.. +++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+..
T Consensus 165 vG~~~A~~llltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 226 (275)
T 4eml_A 165 VGQKKAREIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEGIQWAKEILSKSPLAIRCLKAAF 226 (275)
T ss_dssp HCHHHHHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCcCHHHHHHcCCccEeeCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9995 899999999999999999999999999999999988877777666555555555544
|
| >4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=351.97 Aligned_cols=211 Identities=23% Similarity=0.256 Sum_probs=171.2
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
.+++|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++...... +.
T Consensus 18 ~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~---~~ 94 (278)
T 4f47_A 18 SGPDALVEQRGHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILTGAGGYFCAGMDLKAATKKPPG---DS 94 (278)
T ss_dssp -CCSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCC-------------------
T ss_pred CCCceEEEEECCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCcccCCcChHhhhccchh---hh
Confidence 567899999999999999999999999999999999999999999999999999999999999999988653211 11
Q ss_pred HHHHHHHHHHHHHHHc---cCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH
Q 024298 119 FKNFFETLYQFVYLQG---TFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY 195 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~---~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~ 195 (269)
.........++..+. ++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 95 -~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~ 173 (278)
T 4f47_A 95 -FKDGSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAESAKFGISEAKWSLYPMGGSAVRLVRQIPY 173 (278)
T ss_dssp -------CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETTCEEECCGGGGTCCCTTSHHHHHHHHSCH
T ss_pred -HHHHHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHhCH
Confidence 000112233455566 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 196 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
. +++++++|++++|+||+++||||+|+|++++++++.+.+...+..+..+.+..|++.
T Consensus 174 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 232 (278)
T 4f47_A 174 TVACDLLLTGRHITAAEAKEMGLVGHVVPDGQALTKALEIAEIIAANGPLAVQAILRTI 232 (278)
T ss_dssp HHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCCHHHHHHCCCceEeeChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5 899999999999999999999999999999999988777766665554555555433
|
| >3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-49 Score=351.95 Aligned_cols=214 Identities=17% Similarity=0.200 Sum_probs=181.5
Q ss_pred cccCcEEEEEe-CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCC
Q 024298 38 YLQDQVLVEGR-AKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGK 115 (269)
Q Consensus 38 ~~~~~v~~~~~-~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~ 115 (269)
..++.|.++++ ++|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++++......
T Consensus 24 ~~~~~v~~~~~~~~va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~-- 101 (289)
T 3t89_A 24 EGFEDIRYEKSTDGIAKITINRPQVRNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGY-- 101 (289)
T ss_dssp TTCSSEEEEEETTSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------
T ss_pred CCCCeEEEEEecCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccc--
Confidence 36788999999 99999999999999999999999999999999999999999999999 599999999987542110
Q ss_pred hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH
Q 024298 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY 195 (269)
Q Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~ 195 (269)
.+........+..++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|+++++++|++++|.
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~~~~~g~~~L~r~vG~ 181 (289)
T 3t89_A 102 KDDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVGSFDGGWGASYMARIVGQ 181 (289)
T ss_dssp --------CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCSTTTHHHHHHHCH
T ss_pred hhhhHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCCCEEeccccccCCCCCchHHHHHHHhcCH
Confidence 11111122235668888999999999999999999999999999999999999999999999988888889999999999
Q ss_pred H-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 196 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
. +++++++|++|+|+||+++||||+|+|++++++++.+.+...+..|..+.+..|++.
T Consensus 182 ~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~~A~~la~~~~~a~~~~K~~l 240 (289)
T 3t89_A 182 KKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWCREMLQNSPMALRCLKAAL 240 (289)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcccHHHHHHCCCceEeeCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5 899999999999999999999999999999999988877777666555666666544
|
| >2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-49 Score=348.59 Aligned_cols=212 Identities=17% Similarity=0.195 Sum_probs=179.4
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGR-AFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~-~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
.++.+.++++++|++|+||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|+ +||+|.|++++..... ...+
T Consensus 11 ~~~~i~~~~~~~va~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~-~~~~ 89 (273)
T 2uzf_A 11 EYDEIKYEFYEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGY-VGED 89 (273)
T ss_dssp CCSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC---------CCS
T ss_pred CCceEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhcccc-chhh
Confidence 4667999999999999999999999999999999999999999999999999999998 9999999998753110 0000
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
... ...++.++..+.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 90 ~~~--~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~ 167 (273)
T 2uzf_A 90 QIP--RLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKK 167 (273)
T ss_dssp SSC--CCTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETTCEEECCGGGTTCCCCSTTTHHHHHHHCHHH
T ss_pred hHH--HhhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCCCEEECchhhhCCCCchhHHHHHHHHhCHHH
Confidence 000 00134566788899999999999999999999999999999999999999999999999999999999999985
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+..
T Consensus 168 A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 224 (273)
T 2uzf_A 168 AREIWYLCRQYNAQEALDMGLVNTVVPLEKVEDETVQWCKEIMKHSPTALRFLKAAM 224 (273)
T ss_dssp HHHHHHTCCCEEHHHHHHHTSSSEEECGGGSHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHcCCCccccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999977776666665555555555444
|
| >3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-48 Score=347.52 Aligned_cols=222 Identities=14% Similarity=0.136 Sum_probs=185.1
Q ss_pred ccCcEEE--EEeCCEEEEEEcCCCC----CCCCCHHHHHHHHHHHHHHhc-----CCCceEEEEEcCCCCccccCChhHH
Q 024298 39 LQDQVLV--EGRAKSRAAILNRPSN----LNALNTSMVGRLKRLYESWEE-----NPDIGFVLMKGAGRAFCSGGDVIAL 107 (269)
Q Consensus 39 ~~~~v~~--~~~~~v~~I~ln~p~~----~Nal~~~~~~eL~~~l~~~~~-----d~~v~~vVltg~g~~F~~G~Dl~~~ 107 (269)
.|+++.+ +++++|++|+||||++ .|++|.+|+.+|.++|+.++. |+++++|||+|.|++||+|.|++++
T Consensus 28 ~y~~i~v~~~~~~~V~~itLnrp~k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~ 107 (305)
T 3m6n_A 28 IGSTLRIIEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALF 107 (305)
T ss_dssp -CTTEEEEEETTTTEEEEEECTTC-----CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHH
T ss_pred CCceEEEEEEEECCEEEEEECCccccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHH
Confidence 3555554 6789999999999998 459999999999999999987 5899999999999999999999998
Q ss_pred HHhhccCChhhHHHHHHHHHHHHHHH---ccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCc
Q 024298 108 YQLLNEGKFEDFKNFFETLYQFVYLQ---GTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAG 184 (269)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~i---~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g 184 (269)
.........+....+.+.+...+..+ ..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g 187 (305)
T 3m6n_A 108 CQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEGVMMGLPEVLFDLFPGMG 187 (305)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSS
T ss_pred HhccccccHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCCCEEECchhccCcCCCcc
Confidence 76433233333344444444444444 569999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHhcCCccch
Q 024298 185 ASFYLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFLSLPDRDF 260 (269)
Q Consensus 185 ~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (269)
++++|++++|.. +++++++|++|+|+||+++||||+|+|++++++++.+.+...+..|.+....++.+.......+
T Consensus 188 ~~~~L~r~vG~~~A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~p~a~~~~K~~l~~~~~~~l 264 (305)
T 3m6n_A 188 AYSFMCQRISAHLAQKIMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAVEQVIRESKRTPHAWAAMQQVREMTTAVPL 264 (305)
T ss_dssp HHHHHTTTSCHHHHHHHHHHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHHHHHhcHHHHHHHHHcCCCCCHHHHHHCCCCCEecChhHHHHHHHHHHHHHhhChHHHHHHHHHHHhhhcCCH
Confidence 999999999995 8999999999999999999999999999999999888887777666555555555554444333
|
| >3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=346.80 Aligned_cols=213 Identities=13% Similarity=0.149 Sum_probs=176.7
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCCh-h
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKF-E 117 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~-~ 117 (269)
+++.+.++++|+|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||+|.|++||+|.|+.++......... .
T Consensus 18 ~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~ 97 (279)
T 3t3w_A 18 TEMYIDYDVSDRIATITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTLEF 97 (279)
T ss_dssp -CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCHHH
T ss_pred cCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccchHH
Confidence 578899999999999999999999999999999999999999999999999999999999999999988654221111 1
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
......+.+..++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++ ++++..+ ++++|..
T Consensus 98 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~-~~~~~~~-~~~vG~~~ 175 (279)
T 3t3w_A 98 IYAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAEDALFSDPVVLMDIG-GVEYHGH-TWELGPRK 175 (279)
T ss_dssp HHHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETTCEEECCGGGGTCS-SCSSCCH-HHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCCCEEeCcHHhcCCC-CchHHHH-HhhcCHHH
Confidence 122233456678889999999999999999999999999999999999999999999999994 4444444 8999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+..
T Consensus 176 A~~llltG~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 232 (279)
T 3t3w_A 176 AKEILFTGRAMTAEEVAQTGMVNRVVPRDRLDAETRALAGEIAKMPPFALRQAKRAV 232 (279)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHcCCccCHHHHHHCCCCcEeeChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 899999999999999999999999999999999977766666555555555555443
|
| >3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=344.17 Aligned_cols=211 Identities=20% Similarity=0.179 Sum_probs=177.8
Q ss_pred ccCcEEEE----EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccC
Q 024298 39 LQDQVLVE----GRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG 114 (269)
Q Consensus 39 ~~~~v~~~----~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~ 114 (269)
|.+.+.++ .+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++.......
T Consensus 5 m~~~v~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~ 84 (267)
T 3oc7_A 5 MDALVDYAGPAATGGPVARLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPS 84 (267)
T ss_dssp CCSSEEEECHHHHSSSEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------
T ss_pred cccccCCCCccceeCCEEEEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccCch
Confidence 45678999 89999999999999999999999999999999999999999999999999999999999876211111
Q ss_pred C-hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhh
Q 024298 115 K-FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLP 193 (269)
Q Consensus 115 ~-~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~ 193 (269)
. ......+.+.++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++++ ++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-~v 163 (267)
T 3oc7_A 85 SAYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPRSSFALTEARIGVAPAIISLTLLP-KL 163 (267)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTTHHHHTT-TS
T ss_pred hhhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCCCEEeCcccccCCCcchhHHHHHH-Hh
Confidence 1 111234667788899999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred hHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 194 GYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 194 g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
|.. +++++++|++++|+||+++||||+| ++++++++.+.+...+..|..+.+..|+.
T Consensus 164 G~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~~~l~~~a~~~a~~la~~~~~a~~~~K~~ 221 (267)
T 3oc7_A 164 SARAAARYYLTGEKFDARRAEEIGLITMA--AEDLDAAIDQLVTDVGRGSPQGLAASKAL 221 (267)
T ss_dssp CHHHHHHHHHHCCCBCHHHHHHHTSSSEE--CSSHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCccCHHHHHHCCChhhh--hHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 885 8999999999999999999999999 88899887776666655554455544443
|
| >3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-49 Score=347.12 Aligned_cols=207 Identities=22% Similarity=0.294 Sum_probs=172.2
Q ss_pred ccccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCCh
Q 024298 37 DYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 37 ~~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~ 116 (269)
..+++.|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++........
T Consensus 11 ~~~~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~- 89 (265)
T 3qxi_A 11 GDTEPEVLVEQRDRILIITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVV- 89 (265)
T ss_dssp ----CCEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCCEE-
T ss_pred CCCCCeEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchhhh-
Confidence 3478889999999999999999999999999999999999999999999999999999999999999998765321111
Q ss_pred hhHHHHHHHHHHH-HHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH
Q 024298 117 EDFKNFFETLYQF-VYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY 195 (269)
Q Consensus 117 ~~~~~~~~~~~~l-~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~ 195 (269)
.. ..+ +..+.. ||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|.
T Consensus 90 -~~-------~~~~~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~ 160 (265)
T 3qxi_A 90 -EG-------RGLGFTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARDSAFGIPEVKRGLVAGGGGLLRLPERIPY 160 (265)
T ss_dssp -TT-------TEETTTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHSCH
T ss_pred -hh-------hhhhHHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCCCEEECcccccCcCCcccHHHHHHHHhCH
Confidence 00 011 233444 99999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 196 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
. +++++++|++|+|+||+++||||+|+|++++++++.+.+...+..|..+.+..|++.
T Consensus 161 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~l 219 (265)
T 3qxi_A 161 AIAMELALTGDNLSAERAHALGMVNVLAEPGAALDAAIALAEKITANGPLAVAATKRII 219 (265)
T ss_dssp HHHHHHHHHCCCEEHHHHHHTTSCSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCHHHHHHCCCccEeeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5 899999999999999999999999999999999977776666666555555555433
|
| >1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-48 Score=342.42 Aligned_cols=207 Identities=25% Similarity=0.315 Sum_probs=178.8
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHH
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (269)
+.++ +++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++.........+.. ..
T Consensus 2 i~~~-~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~-~~ 79 (253)
T 1uiy_A 2 VQVE-KGHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENY-RH 79 (253)
T ss_dssp EEEE-CSSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHH-HH
T ss_pred EEEE-eCCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHH-HH
Confidence 6778 899999999999999999999999999999999999999999999999999999999987653100111111 11
Q ss_pred HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHh
Q 024298 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLA 201 (269)
Q Consensus 123 ~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ 201 (269)
...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|++++|.. +++++
T Consensus 80 ~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~a~~l~ 158 (253)
T 1uiy_A 80 SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAALV-SVILVRAVGEKAAKDLL 158 (253)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCHHH-HHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCCcEEeCcccccCcCCchH-HHHHHHHhCHHHHHHHH
Confidence 11266788899999999999999999999999999999999999999999999999999999 99999999995 89999
Q ss_pred ccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 202 LTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|..
T Consensus 159 ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~ 209 (253)
T 1uiy_A 159 LTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLRLTKEL 209 (253)
T ss_dssp HHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HhCCccCHHHHHHCCCcceecChhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999998877766655554455444443
|
| >2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-49 Score=344.60 Aligned_cols=212 Identities=12% Similarity=0.132 Sum_probs=184.3
Q ss_pred cccCcEEEEEeC-CEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCCh
Q 024298 38 YLQDQVLVEGRA-KSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 38 ~~~~~v~~~~~~-~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~ 116 (269)
..++.+.+++++ +|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++... .+.
T Consensus 20 ~~~~~i~~~~~~~~Va~ItLnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~---~~~ 96 (263)
T 2j5g_A 20 TKYENLHFHRDENGILEVRMHTNGSSLVFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDV---TNP 96 (263)
T ss_dssp GSCTTEEEEECTTCEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCT---TSH
T ss_pred CCCCeEEEEEcCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhcc---CCH
Confidence 356679999999 9999999999999999999999999999999999999999999999999999999986432 122
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEec-CcccccccCCCchHHHHHhhhhH
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSN-PETQMGFHPDAGASFYLSHLPGY 195 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~-pe~~~Gl~p~~g~~~~l~r~~g~ 195 (269)
+....++..+..++.++..+||||||+|||+|+ ||++|+++||+|||+++++|++ ||+++|++|++|++++|++++|.
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~L~r~vG~ 175 (263)
T 2j5g_A 97 REWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASENTVFQDMPHLNAGIVPGDGVHILWPLALGL 175 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETTCEECCCHHHHHTCCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCCCEEecCcccccccCCCccHHHHHHHHcCH
Confidence 223344555677888999999999999999999 5999999999999999999999 99999999999999999999998
Q ss_pred H-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 196 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
. +++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|++.
T Consensus 176 ~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 234 (263)
T 2j5g_A 176 YRGRYFLFTQEKLTAQQAYELNVVHEVLPQSKLMERAWEIARTLAKQPTLNLRYTRVAL 234 (263)
T ss_dssp HHHHHHHHTTCCEEHHHHHHTTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCccEecChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5 899999999999999999999999999999999966666555555444444444433
|
| >3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-49 Score=348.57 Aligned_cols=213 Identities=17% Similarity=0.125 Sum_probs=182.2
Q ss_pred cccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCC-ccccCChhHHHHhhccCCh
Q 024298 38 YLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRA-FCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 38 ~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~-F~~G~Dl~~~~~~~~~~~~ 116 (269)
..++.|.++++++|++|+||||+ .|++|.+|+.+|.++++.++.|+++++|||||.|+. ||+|.|++++....... .
T Consensus 5 ~~~~~v~~~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~-~ 82 (289)
T 3h0u_A 5 ASYETIKARLDGTVLSATFNAPP-MNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEA-A 82 (289)
T ss_dssp CCCSSEEEEEETTEEEEEECCTT-TCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHH-H
T ss_pred CCCCeEEEEEECCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcch-h
Confidence 45778999999999999999998 799999999999999999999999999999999954 56777999886532110 0
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC-ceEecCcccccccCCCchHHHHHhhhhH
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFSNPETQMGFHPDAGASFYLSHLPGY 195 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~ 195 (269)
.....+...++.++.++..+||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|++|++|++++|++++|.
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl~p~~g~~~~L~r~vG~ 162 (289)
T 3h0u_A 83 KAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAIQHLTRLLGR 162 (289)
T ss_dssp TTSSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTSCCCSSHHHHHHHHHCH
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCCCCCccHHHHHHHHhCH
Confidence 000023345677888999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred H-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 196 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
. +++++++|++|+|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+.
T Consensus 163 ~~A~ellltG~~i~A~eA~~~GLV~~vv~~~~l~~~a~~lA~~la~~~p~a~~~~K~~ 220 (289)
T 3h0u_A 163 GRALEAVLTSSDFDADLAERYGWVNRAVPDAELDEFVAGIAARMSGFPRDALIAAKSA 220 (289)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSSSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHCCCccEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5 89999999999999999999999999999999997776666655554455554443
|
| >3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-49 Score=343.62 Aligned_cols=205 Identities=23% Similarity=0.318 Sum_probs=178.7
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|++.|.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++...... ..
T Consensus 5 m~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~---~~ 81 (256)
T 3trr_A 5 MADEVLIEQRDRVLLITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAV---LS 81 (256)
T ss_dssp CCCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCC---EE
T ss_pred CCCceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccch---hh
Confidence 567799999999999999999999999999999999999999999999999999999999999999998753211 10
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
... + .+ ..+ .+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. +
T Consensus 82 ~~~----~-~~-~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~a 154 (256)
T 3trr_A 82 ERG----L-GF-TNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRSAKFGIPEVKRGLVAGAGGLLRLPNRIPYQVA 154 (256)
T ss_dssp TTE----E-TT-SSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETTCEECCCGGGGTCCCCSSHHHHHHHHSCHHHH
T ss_pred hhh----h-hH-HHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCCCEEEehhhccCCCCCccHHHHHHHHhCHHHH
Confidence 000 1 12 234 89999999999999999999999999999999999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|++.
T Consensus 155 ~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 210 (256)
T 3trr_A 155 MELALTGESFTAEDAAKYGFINRLVDDGQALDTALELAAKITANGPLAVAATKRII 210 (256)
T ss_dssp HHHHHHCCCEEHHHHGGGTCCSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHhCCCcCHHHHHHCCCeeEecChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999977776666655555555555433
|
| >1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-49 Score=344.27 Aligned_cols=209 Identities=21% Similarity=0.310 Sum_probs=179.7
Q ss_pred ccCcEEEEE---eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCC
Q 024298 39 LQDQVLVEG---RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115 (269)
Q Consensus 39 ~~~~v~~~~---~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~ 115 (269)
.|+.+.++. .++|++|+||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|++||+|.|++++... .
T Consensus 2 ~~~~~~~~~~v~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~----~ 77 (260)
T 1mj3_A 2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNR----T 77 (260)
T ss_dssp CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTC----C
T ss_pred CcccceeecccCcCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcc----c
Confidence 356688887 889999999999999999999999999999999999999999999999999999999986431 1
Q ss_pred hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH
Q 024298 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY 195 (269)
Q Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~ 195 (269)
. ...+...+...+.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 78 ~--~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~ 155 (260)
T 1mj3_A 78 F--QDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGK 155 (260)
T ss_dssp H--HHHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCH
T ss_pred c--hHHHHHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCCCEEeCcccccCCCCCccHHHHHHHHhCH
Confidence 1 11122223334667889999999999999999999999999999999999999999999999999999999999998
Q ss_pred H-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 196 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
. +++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|...
T Consensus 156 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 214 (260)
T 1mj3_A 156 SLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKESV 214 (260)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCCHHHHHHcCCccEEeChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5 899999999999999999999999999999999977776666555544555544443
|
| >2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-49 Score=340.77 Aligned_cols=203 Identities=20% Similarity=0.226 Sum_probs=178.5
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHH
Q 024298 42 QVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKN 121 (269)
Q Consensus 42 ~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 121 (269)
...++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++..... ...
T Consensus 4 ~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~-~~~----- 77 (243)
T 2q35_A 4 VQLTELGNGVVQITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTR-GEV----- 77 (243)
T ss_dssp EEEEEEETTEEEEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHT-TCC-----
T ss_pred eEEEEeeCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccc-hhh-----
Confidence 35677899999999999999999999999999999999999999999999999999999999998764321 111
Q ss_pred HHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHH
Q 024298 122 FFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYL 200 (269)
Q Consensus 122 ~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l 200 (269)
..+.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.. ++++
T Consensus 78 ---~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a~~l 154 (243)
T 2q35_A 78 ---EVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQESVYATNFMKYGFTPVGATSLILREKLGSELAQEM 154 (243)
T ss_dssp ---CCCCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESSSEEECCHHHHTSCCCSSHHHHHHHHHCHHHHHHH
T ss_pred ---HHHHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCCCEEECCccccCCCCcchHHHHHHHHhCHHHHHHH
Confidence 124566788999999999999999999999999999999999999999999999999999999999999984 8999
Q ss_pred hccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++|++++|+||+++||||+++|++++++++.+.+...+..|..+.+..|+..
T Consensus 155 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 207 (243)
T 2q35_A 155 IYTGENYRGKELAERGIPFPVVSRQDVLNYAQQLGQKIAKSPRLSLVALKQHL 207 (243)
T ss_dssp HHHCCCEEHHHHHHTTCSSCEECHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHcCCCCEecChhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999977776666655554554444433
|
| >1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-48 Score=340.04 Aligned_cols=208 Identities=14% Similarity=0.209 Sum_probs=182.4
Q ss_pred CcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHH
Q 024298 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (269)
Q Consensus 41 ~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (269)
+.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++.. .+.+...
T Consensus 16 ~~i~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~----~~~~~~~ 91 (257)
T 1szo_A 16 ENIRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNL----GTPHDWD 91 (257)
T ss_dssp TTEEEEEETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCC----SSHHHHH
T ss_pred ceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhc----CCHHHHH
Confidence 569999999999999999999999999999999999999999999999999999999999999988642 1222223
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEec-CcccccccCCCchHHHHHhhhhHH-HH
Q 024298 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSN-PETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~-pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
.+...++.++.++..+||||||+|||+|+ ||++|+++||+||++++++|++ ||+++|++|++|+++++++++|.. ++
T Consensus 92 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~a~f~~~pe~~lGl~p~~g~~~~l~r~vG~~~A~ 170 (257)
T 1szo_A 92 EIIFEGQRLLNNLLSIEVPVIAAVNGPVT-NAPEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSNRGR 170 (257)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEEECSCBC-SSTHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEECCchH-HHHHHHHHCCEEEEeCCCEEecCcccccccCCCccHHHHHHHHcCHHHHH
Confidence 34455677888999999999999999999 5999999999999999999999 999999999999999999999995 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|++.
T Consensus 171 ~llltG~~~~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 225 (257)
T 1szo_A 171 YFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARRYARKVL 225 (257)
T ss_dssp HHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999976666665555444555555443
|
| >3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=344.82 Aligned_cols=209 Identities=23% Similarity=0.314 Sum_probs=179.2
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
.++.|.++++|+|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|++++..........
T Consensus 7 ~~~~v~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~ 86 (267)
T 3r9t_A 7 DAPGALAERRGNVMVITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPD 86 (267)
T ss_dssp -CCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCTT
T ss_pred CCCcEEEEEECCEEEEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhHH
Confidence 356799999999999999999999999999999999999999999999999999999 5999999999987532211111
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
. ..+ ....+ ...++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 87 ~-~~~---~~~~~-~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG~~~ 161 (267)
T 3r9t_A 87 H-PEW---GFAGY-VRHFIDKPTIAAVNGTALGGGTELALASDLVVADERAQFGLPEVKRGLIAAAGGVFRIAEQLPRKV 161 (267)
T ss_dssp C-GGG---CGGGT-TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETTCEECCGGGGTTCCCTTTHHHHHHHHSCHHH
T ss_pred H-HhH---HHHHH-HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCCCEEECcccccCCCCCccHHHHHHHHcCHHH
Confidence 0 000 00111 23489999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
+++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+.
T Consensus 162 A~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~p~a~~~~K~~ 217 (267)
T 3r9t_A 162 AMRLLLTGEPLSAAAARDWGLINEVVEAGSVLDAALALASAITVNAPLSVQASKRI 217 (267)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSSSEEECTTCHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHCCCccEEcChhHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 89999999999999999999999999999999998877777666655556666655
|
| >3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=343.47 Aligned_cols=205 Identities=20% Similarity=0.259 Sum_probs=169.1
Q ss_pred CCccccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccC
Q 024298 35 SNDYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG 114 (269)
Q Consensus 35 ~~~~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~ 114 (269)
+.+.+++.|.++++|+|++|+||||++.|++|.+|+.+|.++++++++| ++++|||||.|++||+|.|+... .
T Consensus 15 ~~~~~~~~i~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~------~ 87 (264)
T 3he2_A 15 QTQGPGSMIGITQAEAVLTIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGD------A 87 (264)
T ss_dssp -------CEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTC------T
T ss_pred ccCCCCCeEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccc------h
Confidence 3345788899999999999999999999999999999999999999988 99999999999999999999731 1
Q ss_pred ChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhh
Q 024298 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194 (269)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g 194 (269)
.. ..+.+.+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|
T Consensus 88 ~~---~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~vG 164 (264)
T 3he2_A 88 FA---ADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVG 164 (264)
T ss_dssp TG---GGHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTTCEEECTHHHHTCCCCHHHHHHHHHHHC
T ss_pred hh---HHHHHHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCCCEEECcccccCcCCcchHHHHHHHHhC
Confidence 11 234455677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 195 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
.. +++++++|++|+|+||+++||||+|++ ++++.+.+...+..|..+.+..|++.
T Consensus 165 ~~~A~~llltG~~i~A~eA~~~GLV~~v~~----~~~a~~~A~~la~~~p~a~~~~K~~l 220 (264)
T 3he2_A 165 HGRARAMLLSAEKLTAEIALHTGMANRIGT----LADAQAWAAEIARLAPLAIQHAKRVL 220 (264)
T ss_dssp HHHHHHHHHHCCCEEHHHHHHHTSCSEECC----HHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccHHHHHHCCCeEEEec----HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 95 899999999999999999999999986 34545544444444444444444433
|
| >3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-48 Score=342.54 Aligned_cols=208 Identities=20% Similarity=0.263 Sum_probs=174.6
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
++.|.++++|+|++||||||++.|++|.+|+.+|.++++.++.| ++++|||||.|++||+|.|++++........ ..
T Consensus 6 ~~~i~~~~~~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~--~~ 82 (267)
T 3hp0_A 6 YQTIKVRFQASVCYITFHRPEANNTINDTLIEECLQVLNQCETS-TVTVVVLEGLPEVFCFGADFQEIYQEMKRGR--KQ 82 (267)
T ss_dssp CSSEEEEEETTEEEEEECCGGGTTCBCSHHHHHHHHHHHHHHHS-SCCEEEEECCSSCSBCCBCHHHHHHTTTTTC--CS
T ss_pred CceEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHhcC-CCEEEEEECCCCceecCcCHHHHHhcccChH--HH
Confidence 56799999999999999999999999999999999999999986 5999999999999999999999876421111 11
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
....+.++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|++++|.. |+
T Consensus 83 ~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g-~~~l~r~vG~~~A~ 161 (267)
T 3hp0_A 83 ASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQTASFSLSELLFGLYPACV-LPFLIRRIGRQKAH 161 (267)
T ss_dssp CCCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTTCEEECCGGGGTCCCTTT-HHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCCCEEECchhccCcCchhH-HHHHHHHhCHHHHH
Confidence 12334566788889999999999999999999999999999999999999999999999999885 67899999995 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++|++++|+||+++||||+|+|+.+. .+.+.+...+..|..+.+..|++.
T Consensus 162 ellltg~~i~A~eA~~~GLV~~vv~~~~~--~~~~~a~~la~~~p~a~~~~K~~l 214 (267)
T 3hp0_A 162 YMTLMTKPISVQEASEWGLIDAFDAESDV--LLRKHLLRLRRLNKKGIAHYKQFM 214 (267)
T ss_dssp HHHHHCCCBCHHHHHHHTSSSCBCSCTTH--HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHCCCcceecCCHHH--HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999987543 234444444444444444444433
|
| >1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-48 Score=340.27 Aligned_cols=206 Identities=14% Similarity=0.117 Sum_probs=181.7
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC-CCCccccCChhHHHHhhccCChhhHH
Q 024298 42 QVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGA-GRAFCSGGDVIALYQLLNEGKFEDFK 120 (269)
Q Consensus 42 ~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~-g~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (269)
.+.++++++|++|+||||+ .|++|.+|+.+|.++|+.++.|+++++|||||. |++||+|.|+.++.. .+.+...
T Consensus 6 ~v~~~~~~~v~~itlnrp~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~----~~~~~~~ 80 (260)
T 1sg4_A 6 LVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCG----RSPAHYA 80 (260)
T ss_dssp EEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSS----CCHHHHH
T ss_pred EEEEEecCCEEEEEECCCC-CCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhc----cCHHHHH
Confidence 4677778999999999997 699999999999999999999999999999999 699999999998643 1223344
Q ss_pred HHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEe--CCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 121 NFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVT--DKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 121 ~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~--~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
.+.+.++.++.++..+||||||+|||+|+|||++|+++||+||++ ++++|++||+++|++|++|++++|++++|.. +
T Consensus 81 ~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~a~f~~pe~~~Gl~p~~g~~~~l~~~vG~~~a 160 (260)
T 1sg4_A 81 GYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGHRAA 160 (260)
T ss_dssp HHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCCCEEeCchhhhCCCCchhHHHHHHHHhCHHHH
Confidence 555667788999999999999999999999999999999999999 8999999999999999999999999999995 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|..
T Consensus 161 ~~llltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~ 215 (260)
T 1sg4_A 161 ERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQLTKAM 215 (260)
T ss_dssp HHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHcCCcCCHHHHHHcCCCCEecCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999999999999999997776666655554455444443
|
| >1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-49 Score=345.08 Aligned_cols=207 Identities=16% Similarity=0.194 Sum_probs=179.8
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEc-CC-CCccccCChhHHHHhhccCChh
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKG-AG-RAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg-~g-~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
|+.+.++++++|++|+||||++.|++|.+|+.+|.++++.++.|+ +++||||| .| ++||+|.|+.++...... ..
T Consensus 3 ~~~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~-~~- 79 (261)
T 1ef8_A 3 YQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRD-PL- 79 (261)
T ss_dssp CSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----C-TT-
T ss_pred cceEEEEEeCCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCch-hH-
Confidence 567999999999999999999999999999999999999999999 99999999 99 999999999987542111 11
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
.+...++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|..
T Consensus 80 ---~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG~~~ 156 (261)
T 1ef8_A 80 ---SYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHI 156 (261)
T ss_dssp ---CTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHHH
T ss_pred ---HHHHHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCCCEEeCchhccCCCCCccHHHHHHHHhCHHH
Confidence 1122356678889999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
+++++++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|.+
T Consensus 157 a~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~ 212 (261)
T 1ef8_A 157 VKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEE 212 (261)
T ss_dssp HHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHcCCccCHHHHHHCCCcccccCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 89999999999999999999999999999999997777766665554455444443
|
| >3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-48 Score=353.28 Aligned_cols=192 Identities=36% Similarity=0.654 Sum_probs=172.6
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
..+.|.++++++|++|+||||++.|++|.+|+.+|.++|+.++.|+++++|||||.| ++||+|.|+.++....... ..
T Consensus 4 ~~~~v~~~~~~~v~~itLnrP~~~Nal~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~-~~ 82 (363)
T 3bpt_A 4 AAEEVLLGKKGCTGVITLNRPKFLNALTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAK-QK 82 (363)
T ss_dssp CCCSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSS-CC
T ss_pred CCcceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccc-cH
Confidence 345689999999999999999999999999999999999999999999999999998 9999999999886532111 11
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHH
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLG 197 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a 197 (269)
....++...+.++..+..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.++
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~L~r~~g~~a 162 (363)
T 3bpt_A 83 IAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEKCLFAMPETAIGLFPDVGGGYFLPRLQGKLG 162 (363)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTTCEEECCGGGTTSCCCTTHHHHHHHSSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCCeEEeCCccccCCCCCchHHHHHHHhhHHHH
Confidence 12334455567888999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHH
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTAL 231 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~ 231 (269)
++|++||++|+|+||+++||||+|+|++++++.+
T Consensus 163 ~~l~ltg~~i~A~eA~~~GLv~~vv~~~~l~~~~ 196 (363)
T 3bpt_A 163 YFLALTGFRLKGRDVYRAGIATHFVDSEKLAMLE 196 (363)
T ss_dssp HHHHHHCCCEETHHHHHTTSCSEECCGGGHHHHH
T ss_pred HHHHHcCCCCCHHHHHHCCCcceecCHHHHHHHH
Confidence 9999999999999999999999999999987643
|
| >3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=336.03 Aligned_cols=205 Identities=16% Similarity=0.178 Sum_probs=183.1
Q ss_pred cEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHH
Q 024298 42 QVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKN 121 (269)
Q Consensus 42 ~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~ 121 (269)
.|.++++|+|++|+||||++.|++|.+|+.+|.++++.+++ +++++|||||.|++||+|.|+.++... .......
T Consensus 8 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~----~~~~~~~ 82 (254)
T 3isa_A 8 PLAIERRPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQ----SEGDLLL 82 (254)
T ss_dssp SEEEEECSSEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTS----CHHHHHH
T ss_pred eEEEEEECCEEEEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhcc----CchhHHH
Confidence 39999999999999999999999999999999999999987 589999999999999999999987542 1222233
Q ss_pred HHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHH
Q 024298 122 FFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYL 200 (269)
Q Consensus 122 ~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l 200 (269)
.+..++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++| ++++|++++|.. ++++
T Consensus 83 ~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p---g~~~l~~~vG~~~A~~l 159 (254)
T 3isa_A 83 RMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVL---GTRRFRDIVGADQALSI 159 (254)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCC---SHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCCCEEECchhccCccH---HHHHHHHHcCHHHHHHH
Confidence 445567888999999999999999999999999999999999999999999999999998 379999999995 8999
Q ss_pred hccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHhc
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFLS 254 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (269)
+++|++++|+||+++||||+|+|++++++++.+.+...+..|..+.+..|+...
T Consensus 160 ~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l~ 213 (254)
T 3isa_A 160 LGSARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRATLHRVLR 213 (254)
T ss_dssp HTTTCEEEHHHHHHTTSSSEECCGGGHHHHHHHHHHHHTTSCHHHHHHHHHHHS
T ss_pred HHhCCCCcHHHHHHCCCccEEeChhHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999888888877777767777776653
|
| >3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-48 Score=357.33 Aligned_cols=192 Identities=34% Similarity=0.561 Sum_probs=177.2
Q ss_pred cccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccC--
Q 024298 38 YLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEG-- 114 (269)
Q Consensus 38 ~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~-- 114 (269)
.+++.|.++++++|++||||||+++|+||.+|+.+|.++|+.++.|+++++|||||.| ++||+|+|+.++.......
T Consensus 39 v~~~~v~~~~~~~V~~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~ 118 (407)
T 3ju1_A 39 VVFQTLATASGKLVGVVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKG 118 (407)
T ss_dssp EEEEEEECTTSCEEEEEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTS
T ss_pred cccceEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhccccccc
Confidence 4788899999999999999999999999999999999999999999999999999999 8999999999987542111
Q ss_pred -ChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhh
Q 024298 115 -KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLP 193 (269)
Q Consensus 115 -~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~ 193 (269)
.......++...+.++.++..+||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++
T Consensus 119 ~~~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~a~f~~pe~~lGl~P~~G~t~~L~rl~ 198 (407)
T 3ju1_A 119 QVTEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTETSRIAMPEVTIGLYPDVGGSYFLNRMP 198 (407)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTTCEEECGGGGGTCCSCTTHHHHTTTSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCCCEEeChHhhcCCCCCchHHHHHhhhh
Confidence 2234556667777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccCCCCCHHHHHhcCccceeccCChHHH
Q 024298 194 GYLGEYLALTGEKLNGVEMIACGLATHYTLNGVRYT 229 (269)
Q Consensus 194 g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~ 229 (269)
|..+++|++||++|+|+||+++||||+|||++++++
T Consensus 199 g~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~~~l~~ 234 (407)
T 3ju1_A 199 GKMGLFLGLTAYHMNAADACYVGLADHYLNRDDKEL 234 (407)
T ss_dssp TTHHHHHHHHCCCBCHHHHHHHTSCSEECCGGGHHH
T ss_pred HHHHHHHHHcCCcCcHHHHHHCCCccEEcCHHHHHH
Confidence 966899999999999999999999999999999987
|
| >1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=338.32 Aligned_cols=207 Identities=17% Similarity=0.249 Sum_probs=176.2
Q ss_pred cCcEEEEE----eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccC
Q 024298 40 QDQVLVEG----RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEG 114 (269)
Q Consensus 40 ~~~v~~~~----~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~ 114 (269)
+..+.+++ +++|++|+||||++.|++|.+|+.+|.++|+.++.|+++++|||||.| ++||+|.|+.++...
T Consensus 7 ~~~~~~~~~~~~~~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~---- 82 (272)
T 1hzd_A 7 EDELRVRHLEEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKM---- 82 (272)
T ss_dssp CCSEEEEECCGGGTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTS----
T ss_pred CCcEEEEecccccCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhcc----
Confidence 34465553 689999999999999999999999999999999999999999999998 799999999987532
Q ss_pred ChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhh
Q 024298 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPG 194 (269)
Q Consensus 115 ~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g 194 (269)
.......+.+.++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~a~f~~pe~~~Gl~p~~g~~~~l~r~vG 162 (272)
T 1hzd_A 83 SSSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIG 162 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCCCEEeCchhccCCCCCchHHHHHHHHhC
Confidence 22233445566778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-HHHHhccCCCCCHHHHHhcCccceeccCChHHH----HHHHhhhhhccccccHHHHHH
Q 024298 195 YL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYT----ALYFTSLCVSSLCYSSYAAYN 250 (269)
Q Consensus 195 ~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~----~~~~~~~~~~~~~~~~~~~~~ 250 (269)
.. +++++++|++|+|+||+++||||+|+|++++++ ++.+.+...+..|..+.+..|
T Consensus 163 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l~~~~~~~a~~~a~~la~~~p~a~~~~K 223 (272)
T 1hzd_A 163 MSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAK 223 (272)
T ss_dssp HHHHHHHHHHTCEEEHHHHHHHTSCSEEECCCTTSCHHHHHHHHHHHTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCcceecChhhhhHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 85 899999999999999999999999999998754 444444444433333333333
|
| >2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=355.35 Aligned_cols=243 Identities=20% Similarity=0.191 Sum_probs=190.2
Q ss_pred HHhhhccceEee------ceecCccccccCCCCCCC-ccccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHH
Q 024298 7 LLRIKHSFKQVA------FVSHQQRSFSALPDYSSN-DYLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYES 79 (269)
Q Consensus 7 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~ 79 (269)
|++++...+..| ++.|++|..+..+.+... ...++.|.++++++|++|+||||++.|++|.+|+.+|.++|+.
T Consensus 126 ~~~~~~~~~~~g~~~~~~~~~p~~~~~~~lp~f~~~~~~~~~~v~~e~~~gVa~ItLNRP~k~NALs~~m~~eL~~al~~ 205 (440)
T 2np9_A 126 FLRAVLRSPLAGPHLLDAMLRPTPRALELLPEFVRTGEVEMEAVHLERRDGVARLTMCRDDRLNAEDGQQVDDMETAVDL 205 (440)
T ss_dssp HHHHHHHSTTHHHHHHHHHHSCCHHHHHHHHHHHHHSEEECSSEEEEEETTEEEEEECCTTTTTCBCHHHHHHHHHHHHH
T ss_pred hhHhHhcCCCccchhhhhhcCCCcchhhhChhhhhcccCCCceEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHHHHH
Confidence 555555544333 667777654333322111 1234579999999999999999999999999999999999999
Q ss_pred HhcCCCceEEEEEcC--------C-CCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHH------------ccCCC
Q 024298 80 WEENPDIGFVLMKGA--------G-RAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQ------------GTFVK 138 (269)
Q Consensus 80 ~~~d~~v~~vVltg~--------g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i------------~~~~k 138 (269)
++.|+++++|||||. | ++||+|.|++++..................+..++..+ ..+||
T Consensus 206 ~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pk 285 (440)
T 2np9_A 206 ALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEK 285 (440)
T ss_dssp HHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTTCCCTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECC
T ss_pred HHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhccCcchhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCC
Confidence 999999999999994 6 89999999998764211111100112222344555554 47999
Q ss_pred cEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHhccCCCCCHHHHHhcCc
Q 024298 139 PHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLALTGEKLNGVEMIACGL 217 (269)
Q Consensus 139 p~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GL 217 (269)
||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++| +++|++++|.. +++|+++|++|+|+||+++||
T Consensus 286 PvIAAVnG~A~GGG~eLALaCDirIAae~A~Fglpev~lGl~P~~g-~~~L~rlvG~~~A~ellLtG~~i~A~EA~~~GL 364 (440)
T 2np9_A 286 PWVAAVDGFAIGGGAQLLLVFDRVLASSDAYFSLPAAKEGIIPGAA-NLRLGRFAGPRVSRQVILEGRRIWAKEPEARLL 364 (440)
T ss_dssp CEEEEECSEEETHHHHHGGGCSEEEEETTCEEECCCTTTCCCCTTH-HHHHHHHHHHHHHHHHHHHCCCEETTSGGGGGT
T ss_pred CEEEEECCcccccchHHHhhCCEEEEcCCCEEECchhccCcCcchH-HHHHHHHhhHHHHHHHHHcCCCCCHHHHHHCCC
Confidence 9999999999999999999999999999999999999999999887 68999999995 899999999999999999999
Q ss_pred cceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 218 ATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 218 v~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
||+|||++++++++.+.+...+ +. +....|.+.
T Consensus 365 V~~Vvp~~eL~~~a~~~A~~la--~~-Av~~~K~~l 397 (440)
T 2np9_A 365 VDEVVEPDELDAAIERSLTRLD--GD-AVLANRRML 397 (440)
T ss_dssp CSEEECHHHHHHHHHHHHHTTC--SH-HHHHHHHHH
T ss_pred CcEecChHHHHHHHHHHHHHhC--HH-HHHHHHHHH
Confidence 9999999999988877766553 23 344444433
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=337.92 Aligned_cols=209 Identities=16% Similarity=0.129 Sum_probs=184.6
Q ss_pred CCCCCCccccCcEEEEEeCCEEEEEEcCCC----------CCCCCCHHHHHHHHHHHHHHhcC-CCceEEEEEc-CCCCc
Q 024298 31 PDYSSNDYLQDQVLVEGRAKSRAAILNRPS----------NLNALNTSMVGRLKRLYESWEEN-PDIGFVLMKG-AGRAF 98 (269)
Q Consensus 31 ~~~~~~~~~~~~v~~~~~~~v~~I~ln~p~----------~~Nal~~~~~~eL~~~l~~~~~d-~~v~~vVltg-~g~~F 98 (269)
.++.+.+..++.+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.| +++++||||| .|++|
T Consensus 11 i~~~t~p~~~~~v~ve~~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~F 90 (556)
T 2w3p_A 11 VDYRTDPSQYKHWKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVF 90 (556)
T ss_dssp CCCCCCGGGCSSEEEEEETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEE
T ss_pred CCCCCCCCcCceEEEEeeCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcc
Confidence 444555567788999999999999999998 89999999999999999999999 9999999999 88999
Q ss_pred cccCChhHHHHhhccCChhhHHHHHHHHHHHHHHH----ccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC--ceEec
Q 024298 99 CSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQ----GTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK--TVFSN 172 (269)
Q Consensus 99 ~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i----~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~--a~f~~ 172 (269)
|+|+|++++.... ......+.+.++.++..+ .++||||||+|||+|+|||++|+++||+||++++ ++|++
T Consensus 91 cAGaDL~el~~~~----~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~Fgl 166 (556)
T 2w3p_A 91 CSGANIFMLGLST----HAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSL 166 (556)
T ss_dssp ECEECHHHHHHSC----HHHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEEC
T ss_pred cCCcCHHHHhhcc----cHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEec
Confidence 9999999986531 122233445566777888 9999999999999999999999999999999999 99999
Q ss_pred Cccc-ccccCCCchHHHHH--hhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccc
Q 024298 173 PETQ-MGFHPDAGASFYLS--HLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCY 243 (269)
Q Consensus 173 pe~~-~Gl~p~~g~~~~l~--r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~ 243 (269)
||++ +|++|++|++++|+ +++|.. +++++++|++++|+||+++||||+|+|++++++++.+.+...+..+.
T Consensus 167 PEv~~LGL~Pg~Ggt~rLp~~RlVG~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~~eL~~~A~~lA~~LA~~~p 241 (556)
T 2w3p_A 167 PEVPLLGVLPGTGGLTRVTDKRKVRHDRADIFCTVVEGVRGERAKAWRLVDEVVKPNQFDQAIQARALELAAQSD 241 (556)
T ss_dssp CHHHHHSSCCTTTHHHHHHHTSCCCHHHHHHHTTCSSCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHHTTCC
T ss_pred ccccccCCCCCccHHHHHHhhccCCHHHHHHHHHcCCCCCHHHHHHCCCceEEeChhHHHHHHHHHHHHHHcCCh
Confidence 9999 99999999999999 999984 89999999999999999999999999999999987776665544433
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-43 Score=345.70 Aligned_cols=186 Identities=18% Similarity=0.261 Sum_probs=165.6
Q ss_pred EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHH
Q 024298 44 LVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFF 123 (269)
Q Consensus 44 ~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~ 123 (269)
.++.+|+|++||||||+ .|+||.+|+.+|.+++++++.|+++++|||||.|+.||+|+|++++..... ..
T Consensus 24 ~~~~~~~Va~itlnrP~-~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aGaDl~~~~~~~~---~~------ 93 (742)
T 3zwc_A 24 YLRLPHSLAMIRLCNPP-VNAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTP---GL------ 93 (742)
T ss_dssp EEECSTTEEEEEECCTT-TTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCSSSCCSSCS---CS------
T ss_pred EEEeeCCEEEEEeCCCc-ccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccccCcChHhhhccCh---hH------
Confidence 34568999999999997 699999999999999999999999999999999999999999998754321 11
Q ss_pred HHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHhc
Q 024298 124 ETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLAL 202 (269)
Q Consensus 124 ~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~l 202 (269)
.+..++.+|.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|.. |++|++
T Consensus 94 -~~~~~~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~a~fg~pev~lGl~Pg~ggt~rL~rlvG~~~A~~l~l 172 (742)
T 3zwc_A 94 -ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLIT 172 (742)
T ss_dssp -HHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCTTTHHHHHHHHHCHHHHHHHHH
T ss_pred -HHHHHHHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCCCEEECcccCcccCCCccHHHHHHHhhhHHHHHHHHH
Confidence 234577788999999999999999999999999999999999999999999999999999999999999995 899999
Q ss_pred cCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccc
Q 024298 203 TGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSL 241 (269)
Q Consensus 203 tG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~ 241 (269)
+|++++|+||+++||||+|+|++.+++ +.+.+...+..
T Consensus 173 tG~~i~a~eA~~~GLv~~vv~~d~~~~-A~~~A~~ia~~ 210 (742)
T 3zwc_A 173 SGKYLSADEALRLGILDAVVKSDPVEE-AIKFAQKIIDK 210 (742)
T ss_dssp HCCCEEHHHHHHHTSCSEEESSCHHHH-HHHHHHHHTTS
T ss_pred cCCchhHHHHHHcCCccEecCchhhHH-HHHHHHHHhcC
Confidence 999999999999999999999887654 45554444433
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-42 Score=339.21 Aligned_cols=200 Identities=16% Similarity=0.179 Sum_probs=179.2
Q ss_pred cCcEEEE-EeCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CccccCChhHHHHhhccCCh
Q 024298 40 QDQVLVE-GRAKSRAAILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGR-AFCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 40 ~~~v~~~-~~~~v~~I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~-~F~~G~Dl~~~~~~~~~~~~ 116 (269)
.+.+.++ .+++|++||||||+ +.|++|.+++.+|.++++.++.|+++++||||| |+ +||+|.|+.++..... .+.
T Consensus 5 ~~~i~~~~~~~~va~itlnrp~~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~-~~~ 82 (715)
T 1wdk_A 5 GKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS-GKDVFIVGADITEFVENFK-LPD 82 (715)
T ss_dssp CSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEE-SSSSSBBCCCHHHHHHHTT-SCH
T ss_pred CCeEEEEEeeCCEEEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCeEeCCcCHHHHhhccc-CCH
Confidence 3558888 78899999999998 899999999999999999999999999999999 86 9999999999865321 122
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL 196 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~ 196 (269)
+....+.+.++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~ggt~~L~r~vG~~ 162 (715)
T 1wdk_A 83 AELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVD 162 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCCCEEeChhhccCCCCCccHHHHHHHHhCHH
Confidence 23344556678889999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccc
Q 024298 197 -GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSL 241 (269)
Q Consensus 197 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~ 241 (269)
|++++++|++++|+||+++||||+|+|++++++++.+.+...+..
T Consensus 163 ~A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la~~ 208 (715)
T 1wdk_A 163 NAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISG 208 (715)
T ss_dssp HHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCHHHHHHCCCceEEeChHHHHHHHHHHHHHHhhc
Confidence 899999999999999999999999999999999988877666443
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-42 Score=338.20 Aligned_cols=197 Identities=22% Similarity=0.294 Sum_probs=168.0
Q ss_pred cCcEEEE-EeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CccccCChhHHHHhhccCChh
Q 024298 40 QDQVLVE-GRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGR-AFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 40 ~~~v~~~-~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~-~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
++.+.++ .+++|++|||||| +.|++|.+|+.+|.++++.++.|+++++||||| |+ +||+|+|++++..... ...+
T Consensus 6 ~~~i~~~~~~~~va~itlnrp-~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg-g~~~F~aG~Dl~~~~~~~~-~~~~ 82 (725)
T 2wtb_A 6 KGKTVMEVGGDGVAVITLINP-PVNSLSFDVLYNLKSNYEEALSRNDVKAIVITG-AKGRFSGGFDISGFGEMQK-GNVK 82 (725)
T ss_dssp -CEEEEEECTTSEEEEEEECT-TTTCCCHHHHHHHHHHHHHHTTCTTCCEEEEEE-SSSCCBCSSCC-------------
T ss_pred CCeEEEEEeeCCEEEEEECCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEC-CCCcccCCcCHHHHhcccc-hhhh
Confidence 4568888 7899999999999 789999999999999999999999999999999 86 9999999998754210 0000
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
....+.+.++.++.++.++||||||+|||+|+|||++|+++||+|||+++++|++||+++|++|++|++++|+|++|..
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~a~fglpev~lGl~P~~Ggt~~L~rlvG~~~ 162 (725)
T 2wtb_A 83 EPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPAAQLGLPELQLGVIPGFGGTQRLPRLVGLTK 162 (725)
T ss_dssp CCSSSHHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTTCEEECCGGGGTCCCCSSHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCCCEEeCchhccCCCCCccHHHHHHHhcCHHH
Confidence 0011233456677789999999999999999999999999999999999999999999999999999999999999984
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhc
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVS 239 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~ 239 (269)
|++++++|++++|+||+++||||+|+|++++++++.+.+...+
T Consensus 163 A~~l~ltG~~~~a~eA~~~GLv~~vv~~~~l~~~a~~~a~~la 205 (725)
T 2wtb_A 163 ALEMILTSKPVKAEEGHSLGLIDAVVPPAELVTTARRWALDIV 205 (725)
T ss_dssp HHHHHHHCCCEEHHHHHHHTSCSEECCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHCCccceEcChhHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999998888766653
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-23 Score=201.58 Aligned_cols=170 Identities=15% Similarity=0.067 Sum_probs=141.7
Q ss_pred EeCCEEEEEEcCCCCCCC--CCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHH
Q 024298 47 GRAKSRAAILNRPSNLNA--LNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFE 124 (269)
Q Consensus 47 ~~~~v~~I~ln~p~~~Na--l~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~ 124 (269)
.+++|++|++|+|.+.|+ ++..+.++|.++|+.++.|+++++|||++.+ .|.|+... .
T Consensus 299 ~~~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s----pGG~~~~~----------------~ 358 (593)
T 3bf0_A 299 TGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS----PGGSVTAS----------------E 358 (593)
T ss_dssp CSCEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE----EEECHHHH----------------H
T ss_pred CCCCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC----CCCCHHHH----------------H
Confidence 457899999999987788 6888999999999999999999999999974 57777542 1
Q ss_pred HHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcc------------cccccCCC---------
Q 024298 125 TLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET------------QMGFHPDA--------- 183 (269)
Q Consensus 125 ~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~------------~~Gl~p~~--------- 183 (269)
.+++.+.++..++|||||+|+|.|.|||+.|+++||++||++++.|+.+++ ++|+.|..
T Consensus 359 ~i~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~ 438 (593)
T 3bf0_A 359 VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADV 438 (593)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCC
T ss_pred HHHHHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeeccccccc
Confidence 234456677789999999999999999999999999999999999999985 58887532
Q ss_pred ----chH---------------HHHHhhhhH-H-----HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhh
Q 024298 184 ----GAS---------------FYLSHLPGY-L-----GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSL 236 (269)
Q Consensus 184 ----g~~---------------~~l~r~~g~-~-----a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~ 236 (269)
+.+ ..+.+.++. + +.+++++|+.++|+||+++||||++++.+++.+++.+.+.
T Consensus 439 ~~~~~~t~~~~~~l~~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~~~~~~~a~~~a~ 516 (593)
T 3bf0_A 439 SITRALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELAK 516 (593)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCHHHHHHHHHHHSC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCHHHHHHHHHHHcC
Confidence 222 455666665 3 6789999999999999999999999999988887766443
|
| >3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=167.13 Aligned_cols=168 Identities=14% Similarity=0.033 Sum_probs=126.5
Q ss_pred eCCEEEEEEcCCCCCCCCCHH-------HHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHH
Q 024298 48 RAKSRAAILNRPSNLNALNTS-------MVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFK 120 (269)
Q Consensus 48 ~~~v~~I~ln~p~~~Nal~~~-------~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~ 120 (269)
+++|++|.++.+=..+.-... .+.+|.++|+.++.|+++++|||++. |.|.|+...
T Consensus 2 ~~~iavi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~----s~Gg~~~~~------------- 64 (240)
T 3rst_A 2 SSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVN----SPGGGVYES------------- 64 (240)
T ss_dssp CCEEEEEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEE----ECCBCHHHH-------------
T ss_pred CCeEEEEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEec----CCCCCHHHH-------------
Confidence 467888888865322210011 36899999999999999999999997 678887642
Q ss_pred HHHHHHHHHHHHHcc-CCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecC---------------------ccccc
Q 024298 121 NFFETLYQFVYLQGT-FVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNP---------------------ETQMG 178 (269)
Q Consensus 121 ~~~~~~~~l~~~i~~-~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~p---------------------e~~~G 178 (269)
..+.+.+..+.. ++|||||+++|.|.|||+.|+++||++|+++++.|+.+ +++.|
T Consensus 65 ---~~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G 141 (240)
T 3rst_A 65 ---AEIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSG 141 (240)
T ss_dssp ---HHHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESS
T ss_pred ---HHHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEecc
Confidence 123445556666 89999999999999999999999999999999999999 55677
Q ss_pred ccCCCchHH--------------------------HHHhhhhHHHHHHhccCCCCCHHHHHhcCccceeccCChHHHHHH
Q 024298 179 FHPDAGASF--------------------------YLSHLPGYLGEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALY 232 (269)
Q Consensus 179 l~p~~g~~~--------------------------~l~r~~g~~a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~ 232 (269)
-.+..+..+ .-.|.+.....+.+++|+.+++++|+++||||++.+.+++.+.+.
T Consensus 142 ~~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~~~~~~~~~~g~~~~a~~A~~~GLVD~i~~~~~~~~~~~ 221 (240)
T 3rst_A 142 AHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKKIADGRVYDGRQAKKLNLVDELGFYDDTITAMK 221 (240)
T ss_dssp TTTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHCSSCEEEHHHHHHTTSSSEECCHHHHHHHHH
T ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhcCCcccHHHHHHcCCCcccCCHHHHHHHHH
Confidence 766665321 122333333344478999999999999999999999888877655
Q ss_pred Hhh
Q 024298 233 FTS 235 (269)
Q Consensus 233 ~~~ 235 (269)
+.+
T Consensus 222 ~~~ 224 (240)
T 3rst_A 222 KDH 224 (240)
T ss_dssp HHC
T ss_pred HHh
Confidence 443
|
| >3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-20 Score=157.92 Aligned_cols=153 Identities=13% Similarity=0.156 Sum_probs=125.4
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHH
Q 024298 48 RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLY 127 (269)
Q Consensus 48 ~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~ 127 (269)
.+.|++|+++ |+++.++.++|.++|+.++++ ++++|||+.. |.|.|+... .
T Consensus 7 ~~~V~vI~i~-----g~I~~~~~~~l~~~l~~a~~~-~~~~Ivl~in----spGG~v~~~-------------------~ 57 (230)
T 3viv_A 7 KNIVYVAQIK-----GQITSYTYDQFDRYITIAEQD-NAEAIIIELD----TPGGRADAM-------------------M 57 (230)
T ss_dssp CCEEEEEEEE-----SCBCHHHHHHHHHHHHHHHHT-TCSEEEEEEE----BSCEEHHHH-------------------H
T ss_pred CCeEEEEEEe-----CEECHHHHHHHHHHHHHHhcC-CCCEEEEEEe----CCCcCHHHH-------------------H
Confidence 4579999997 579999999999999999864 5899999976 777776432 2
Q ss_pred HHHHHHccCCCcEEEEE---chhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchH---------------HHH
Q 024298 128 QFVYLQGTFVKPHVAIL---DGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGAS---------------FYL 189 (269)
Q Consensus 128 ~l~~~i~~~~kp~Iaav---~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~---------------~~l 189 (269)
.++..|..+++|||++| +|.|.|+|+.|+++||+++++++++|+.+++..+. |..|.+ ..+
T Consensus 58 ~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~a~ig~~~p~~~~-~~~G~~~~~~~k~~~~~~~~~~~l 136 (230)
T 3viv_A 58 NIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGACRPILGY-SQNGSIIEAPPAITNYFIAYIKSL 136 (230)
T ss_dssp HHHHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTTCEEECCCEEEEE-CTTSCEEECCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCCCEEEeccceecC-CCCCCchHHHHHHHHHHHHHHHHH
Confidence 35556778999999999 99999999999999999999999999999987533 444442 246
Q ss_pred HhhhhH---HHHHHhccCCCCCHHHHHhcCccceeccC-ChHHHH
Q 024298 190 SHLPGY---LGEYLALTGEKLNGVEMIACGLATHYTLN-GVRYTA 230 (269)
Q Consensus 190 ~r~~g~---~a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~ 230 (269)
++..|+ .+.+++..+..++|+||+++||||+|+++ +++++.
T Consensus 137 a~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~~~~ll~~ 181 (230)
T 3viv_A 137 AQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLKK 181 (230)
T ss_dssp HHHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSSHHHHHHH
T ss_pred HHHhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCCHHHHHHH
Confidence 667775 36899999999999999999999999986 444443
|
| >2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.5e-16 Score=137.99 Aligned_cols=155 Identities=13% Similarity=0.044 Sum_probs=121.4
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (269)
|.++..+..-..|+++..+.+.+.++++.+.++ .+.+|+|++.| |+|+.+... .. ..+..+.
T Consensus 120 V~v~a~d~~~~ggslg~~~~~Ki~r~~e~A~~~-~~PvI~l~~sG-----Garlqeg~~--------~l----~~~~~i~ 181 (304)
T 2f9y_B 120 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALED-NCPLICFSASG-----GARMQEALM--------SL----MQMAKTS 181 (304)
T ss_dssp CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHH-TCCEEEEEEES-----SBCGGGTHH--------HH----HHHHHHH
T ss_pred EEEEEEcCccccCCCCHHHHHHHHHHHHHHHhC-CCCEEEEECCC-----CcCHHHHHH--------HH----HHHHHHH
Confidence 455555555578999999999999999999987 79999999965 888855321 11 2223344
Q ss_pred HHH---ccCCCcEEEEEchhcchhh-HHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCC
Q 024298 131 YLQ---GTFVKPHVAILDGITMGCG-AGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEK 206 (269)
Q Consensus 131 ~~i---~~~~kp~Iaav~G~a~GgG-~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~ 206 (269)
..+ ...++|+|++|+|+|.||| +.++++||++|+.++++|++. +...+.+.+|.. ++++.
T Consensus 182 ~al~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~A~i~v~-----------Gp~~i~~~ig~~-----l~~~~ 245 (304)
T 2f9y_B 182 AALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFA-----------GPRVIEQTVREK-----LPPGF 245 (304)
T ss_dssp HHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESS-----------CHHHHHHHHTSC-----CCTTT
T ss_pred HHHHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCCcEEEee-----------cHHHHHHHhCcc-----CCccc
Confidence 444 4569999999999999999 678999999999999999997 456667776642 46899
Q ss_pred CCHHHHHhcCccceeccCChHHHHHHHhhhhhc
Q 024298 207 LNGVEMIACGLATHYTLNGVRYTALYFTSLCVS 239 (269)
Q Consensus 207 i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~ 239 (269)
.+++++.++|+||.|++++++.+.+.+......
T Consensus 246 ~~Ae~~~~~Glvd~Vv~~~el~~~l~~ll~~l~ 278 (304)
T 2f9y_B 246 QRSEFLIEKGAIDMIVRRPEMRLKLASILAKLM 278 (304)
T ss_dssp TBHHHHGGGTCCSEECCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHhcCCccEEeCcHHHHHHHHHHHHHhh
Confidence 999999999999999999888877655544443
|
| >1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.8e-16 Score=131.42 Aligned_cols=139 Identities=14% Similarity=0.079 Sum_probs=107.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.++.++.+++.+.|..++.++.++.|+|.- .|.|.++..- ..++..+..+++||++.
T Consensus 53 ~I~~~~a~~i~~~L~~l~~~~~~k~I~l~I----nSPGG~v~ag-------------------~~I~~~i~~~~~pV~t~ 109 (218)
T 1y7o_A 53 PVEDNMANSVIAQLLFLDAQDSTKDIYLYV----NTPGGSVSAG-------------------LAIVDTMNFIKADVQTI 109 (218)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCTTSCEEEEE----EECCBCHHHH-------------------HHHHHHHHHSSSCEEEE
T ss_pred EECHHHHHHHHHHHHHHHhcCCCCCEEEEE----ECcCCCHHHH-------------------HHHHHHHHhcCCCEEEE
Confidence 388999999999999999877778777773 4666655421 12344566789999999
Q ss_pred EchhcchhhHHHHHhCCE--EEEeCCceEecCcccccccCCCch------------------HHHHHhhhhH---HHHHH
Q 024298 144 LDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGA------------------SFYLSHLPGY---LGEYL 200 (269)
Q Consensus 144 v~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~------------------~~~l~r~~g~---~a~~l 200 (269)
++|.|.++|+.|+++||. |++.++++|++++.. |..|..|. ...+.+..|. ...++
T Consensus 110 v~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~-~g~~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i~~~ 188 (218)
T 1y7o_A 110 VMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPM-GGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVHAD 188 (218)
T ss_dssp EEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred EccEeHHHHHHHHHcCCcCcEEEcCCcEEEEeccc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999 999999999999987 44442333 2446666666 24778
Q ss_pred hccCCCCCHHHHHhcCccceeccCCh
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNGV 226 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~~ 226 (269)
+..|+.++|+||+++||||+|+++++
T Consensus 189 ~~~~~~~ta~EA~e~GLVD~v~~~~~ 214 (218)
T 1y7o_A 189 AERDNWMSAQETLEYGFIDEIMANNS 214 (218)
T ss_dssp HHSCCCBCHHHHHHHTSCSEECCCC-
T ss_pred HhCCCEEcHHHHHHCCCCcEEcCcCC
Confidence 88999999999999999999998875
|
| >2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=129.50 Aligned_cols=152 Identities=12% Similarity=0.053 Sum_probs=108.5
Q ss_pred eCCEEEEEEcCCC---------CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 48 RAKSRAAILNRPS---------NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 48 ~~~v~~I~ln~p~---------~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
+|.-..|.-|++. ..++++.+......+.++.++... +-+|.+.-.+ |..+..-..
T Consensus 115 ~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~-~PlI~lvdt~-----Ga~~g~~ae--------- 179 (327)
T 2f9i_A 115 NGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFN-RPIFTFIDTK-----GAYPGKAAE--------- 179 (327)
T ss_dssp TTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEES-----CSCCCHHHH---------
T ss_pred CCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCC-----CCCcchhhh---------
Confidence 4444455666654 347899999999999999988765 4455554432 222221110
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH-HH
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LG 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~-~a 197 (269)
.......+..++..+..+++|+|++|+|.|.|||+.++++||++||+++++|++ +.|.+++..++.+..+. .+
T Consensus 180 ~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~~A~~~v------~~peg~a~il~~~~~~a~~A 253 (327)
T 2f9i_A 180 ERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSV------ISPEGAAALLWKDSNLAKIA 253 (327)
T ss_dssp HTTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEETTCBCBS------SCHHHHHHHHSSCGGGHHHH
T ss_pred hhhhHHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCCCEEEEcCCceEee------cCchHHHHHHHHHhcchHHH
Confidence 011234556677788999999999999999999999999999999999999886 34555555444444443 35
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccC
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~ 224 (269)
.++ +.++|++|+++|+||+|+|.
T Consensus 254 ~e~----~~itA~~a~~~GlVd~VV~e 276 (327)
T 2f9i_A 254 AET----MKITAHDIKQLGIIDDVISE 276 (327)
T ss_dssp HHH----HTCBHHHHHHTTSSSEEECC
T ss_pred HHH----cCCCHHHHHHcCCceEEecC
Confidence 555 78999999999999999994
|
| >2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-14 Score=128.07 Aligned_cols=138 Identities=12% Similarity=-0.019 Sum_probs=105.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEE
Q 024298 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (269)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~I 141 (269)
.++++++......+.++.++... +-+|.+.-.+ |+.+..-.. .......+..++..+..+++|+|
T Consensus 152 ~G~~~~~~~~Ka~r~~~~A~~~~-lPlI~lvDt~-----Ga~~g~~aE---------~~g~~~~~a~~l~al~~~~vPvI 216 (339)
T 2f9y_A 152 FGMPAPEGYRKALRLMQMAERFK-MPIITFIDTP-----GAYPGVGAE---------ERGQSEAIARNLREMSRLGVPVV 216 (339)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEES-----CSCCSHHHH---------HTTHHHHHHHHHHHHHTCSSCEE
T ss_pred cCCCCHHHHHHHHHHHHHHhhcC-CCEEEEEeCC-----CCccchHHH---------HHHHHHHHHHHHHHHHhCCCCEE
Confidence 46899999999999999888764 4455555432 332222111 01233455667778899999999
Q ss_pred EEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH-HHHHHhccCCCCCHHHHHhcCccce
Q 024298 142 AILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGLATH 220 (269)
Q Consensus 142 aav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~-~a~~l~ltG~~i~a~eA~~~GLv~~ 220 (269)
++|+|.|.|||+.++++||++||+++++|++ +.|.++++.++.+..+. .+.++ ..++|++|+++|+||+
T Consensus 217 avV~G~a~GGGa~~~~~~D~via~p~A~~~v------~~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~GlVd~ 286 (339)
T 2f9y_A 217 CTVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDS 286 (339)
T ss_dssp EEEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSC
T ss_pred EEEeCCcCcHHHHHHhccCeeeecCCCEEEe------eccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCCeeE
Confidence 9999999999999999999999999999997 45667777766666554 46666 6799999999999999
Q ss_pred eccC
Q 024298 221 YTLN 224 (269)
Q Consensus 221 vv~~ 224 (269)
|+|.
T Consensus 287 VV~e 290 (339)
T 2f9y_A 287 IIPE 290 (339)
T ss_dssp CCCC
T ss_pred EecC
Confidence 9994
|
| >2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A | Back alignment and structure |
|---|
Probab=99.07 E-value=8.4e-10 Score=93.01 Aligned_cols=141 Identities=13% Similarity=0.039 Sum_probs=96.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.++..+.+.+.+.|..++.++.++.|+|.=. |.|+++.. ...+...|..+++||++.
T Consensus 35 ~I~~~~a~~i~~~L~~~~~~~~~k~I~l~In----SPGG~v~a-------------------~~~I~~~i~~~~~pV~~~ 91 (208)
T 2cby_A 35 EVNDEIANRLCAQILLLAAEDASKDISLYIN----SPGGSISA-------------------GMAIYDTMVLAPCDIATY 91 (208)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHCSSCEEEE
T ss_pred EECHHHHHHHHHHHHHHHhCCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHHHHhcCCCEEEE
Confidence 3778999999999999987666666665532 44554422 122444556678999999
Q ss_pred EchhcchhhHHHHHhCCE--EEEeCCceEecCcccccccCCCchH------------------HHHHhhhhHH---HHHH
Q 024298 144 LDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGAS------------------FYLSHLPGYL---GEYL 200 (269)
Q Consensus 144 v~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~------------------~~l~r~~g~~---a~~l 200 (269)
+.|.|.++|..++++||. |++.+++.++.....-|. .|.. ..+.+..|.. ..++
T Consensus 92 v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~ 168 (208)
T 2cby_A 92 AMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGV---TGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEAD 168 (208)
T ss_dssp EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC-------------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred ECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 999999999999999998 999999999887654321 1110 1122333331 2557
Q ss_pred hccCCCCCHHHHHhcCccceeccC-ChHHHH
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLN-GVRYTA 230 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~ 230 (269)
+..|..++++||+++||||++.+. +++++.
T Consensus 169 ~~~~~~~ta~eA~e~GLvD~i~~~~~~ll~~ 199 (208)
T 2cby_A 169 SDRDRWFTAAEALEYGFVDHIITRAHVNGEA 199 (208)
T ss_dssp HHTTCEEEHHHHHHHTSCSEECSCC------
T ss_pred HhCCcEEcHHHHHHcCCCcEecCchHHHHHH
Confidence 788999999999999999999875 444443
|
| >3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A | Back alignment and structure |
|---|
Probab=98.76 E-value=9.6e-08 Score=79.99 Aligned_cols=137 Identities=13% Similarity=0.053 Sum_probs=95.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.++.++.+.+.+.|..++.++..+.|+|.=. |.|+++.. ...+...|...++||++.
T Consensus 35 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~In----SPGG~v~~-------------------~~~I~~~i~~~~~~V~t~ 91 (203)
T 3qwd_A 35 QIDDNVANSIVSQLLFLQAQDSEKDIYLYIN----SPGGSVTA-------------------GFAIYDTIQHIKPDVQTI 91 (203)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHSSSCEEEE
T ss_pred EECHHHHHHHHHHHHHHHhcCCCCCEEEEEe----CCCCCHHH-------------------HHHHHHHHHHhcCCcEEE
Confidence 4889999999999999987665565554432 44554422 122334455678999999
Q ss_pred EchhcchhhHHHHHhCC--EEEEeCCceEecCcccccccCCCchHH------------------HHHhhhhHH---HHHH
Q 024298 144 LDGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGASF------------------YLSHLPGYL---GEYL 200 (269)
Q Consensus 144 v~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~~g~~---a~~l 200 (269)
+.|.|.++|..++++|| .|++.++++|.+....-|. .|-.. .+.+..|.. ..++
T Consensus 92 ~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~---~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~ 168 (203)
T 3qwd_A 92 CIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGA---QGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKD 168 (203)
T ss_dssp EEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSST---TTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred EeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999 6999999999886543221 11110 112223331 2455
Q ss_pred hccCCCCCHHHHHhcCccceeccCCh
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNGV 226 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~~ 226 (269)
+-...-++|+||+++||||+|+++.+
T Consensus 169 ~~~d~~lta~EA~e~GliD~I~~~~~ 194 (203)
T 3qwd_A 169 TDRDNFLTAEEAKEYGLIDEVMVPET 194 (203)
T ss_dssp HTSCCCEEHHHHHHHTSCSEECCCCC
T ss_pred hhcCceecHHHHHHcCCcCEecCCcc
Confidence 55567899999999999999998765
|
| >1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.8e-08 Score=83.79 Aligned_cols=136 Identities=14% Similarity=0.048 Sum_probs=93.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.++..+.+.+.+.|..++.++..+.|+|.=. |.|+++.. ...+...|...++||++.
T Consensus 34 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~In----SPGG~v~a-------------------~~~I~~~i~~~~~pV~~~ 90 (193)
T 1yg6_A 34 QVEDHMANLIVAQMLFLEAENPEKDIYLYIN----SPGGVITA-------------------GMSIYDTMQFIKPDVSTI 90 (193)
T ss_dssp SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHSSSCEEEE
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CcCCCHHH-------------------HHHHHHHHHhcCCCEEEE
Confidence 3788899999999998887665676666533 45555432 112344455678999999
Q ss_pred EchhcchhhHHHHHhCCE--EEEeCCceEecCcccccccCCCchHH------------------HHHhhhhHH---HHHH
Q 024298 144 LDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGASF------------------YLSHLPGYL---GEYL 200 (269)
Q Consensus 144 v~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~~g~~---a~~l 200 (269)
+.|.|..+|..++++||. |++.+++.++......|. .|... .+.+..|.. ..++
T Consensus 91 v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~---~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~ 167 (193)
T 1yg6_A 91 CMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGY---QGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERD 167 (193)
T ss_dssp EEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred EeeeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999999 999999998876544332 11110 011222321 1334
Q ss_pred hccCCCCCHHHHHhcCccceeccCC
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNG 225 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~ 225 (269)
+-.+..++++||+++||||++.++.
T Consensus 168 ~~~~~~~ta~eA~~~GliD~i~~~~ 192 (193)
T 1yg6_A 168 TERDRFLSAPEAVEYGLVDSILTHR 192 (193)
T ss_dssp TSSCEEEEHHHHHHHTSSSEECCCC
T ss_pred hcCCeEEcHHHHHHcCCCCEecCCC
Confidence 4445567999999999999998753
|
| >2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-07 Score=80.24 Aligned_cols=139 Identities=11% Similarity=-0.015 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.++..+.+.+.+.|..++.++. +.|+|.=. |.|+++.. ...+...|...++||++.
T Consensus 47 ~I~~~~a~~i~~~L~~l~~~~~-k~I~l~IN----SPGGsv~a-------------------~~~I~~~i~~~~~pV~t~ 102 (215)
T 2f6i_A 47 EINKKTADELISQLLYLDNINH-NDIKIYIN----SPGGSINE-------------------GLAILDIFNYIKSDIQTI 102 (215)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCC-SCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHSSSCEEEE
T ss_pred EECHHHHHHHHHHHHHHHhCCC-CcEEEEEE----CCCCCHHH-------------------HHHHHHHHHhcCCCEEEE
Confidence 3788899999999998876554 55555432 44554422 112344455678899999
Q ss_pred EchhcchhhHHHHHhCCE--EEEeCCceEecCcccccccC---CCchH-HHH-----------HhhhhH--H-HHHHhcc
Q 024298 144 LDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHP---DAGAS-FYL-----------SHLPGY--L-GEYLALT 203 (269)
Q Consensus 144 v~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p---~~g~~-~~l-----------~r~~g~--~-a~~l~lt 203 (269)
+.|.|..+|..++++||. +++.+++.+.+.....|..- +.... ..+ .+..|. . ..+++-.
T Consensus 103 v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~~~g~~~e~i~~~~~~ 182 (215)
T 2f6i_A 103 SFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDR 182 (215)
T ss_dssp EEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHT
T ss_pred EeeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhC
Confidence 999999999999999999 99999999987655433210 00000 001 111222 1 1334333
Q ss_pred CCCCCHHHHHhcCccceeccCCh
Q 024298 204 GEKLNGVEMIACGLATHYTLNGV 226 (269)
Q Consensus 204 G~~i~a~eA~~~GLv~~vv~~~~ 226 (269)
+..++++||+++||||+|.++..
T Consensus 183 ~~~lta~eA~e~GLiD~I~~~~~ 205 (215)
T 2f6i_A 183 DYYMNALEAKQYGIIDEVIETKL 205 (215)
T ss_dssp TCEECHHHHHHHTSCSEECCCSS
T ss_pred CeecCHHHHHHCCCCCEecCCcc
Confidence 45579999999999999987643
|
| >2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-06 Score=82.99 Aligned_cols=203 Identities=11% Similarity=0.060 Sum_probs=147.4
Q ss_pred EEEEeCCEEEEEEcCCCCC-------------CCCCHHHHHHHHHHHHHHh-cCCCceEEEEEcCCCCccccCChhHHHH
Q 024298 44 LVEGRAKSRAAILNRPSNL-------------NALNTSMVGRLKRLYESWE-ENPDIGFVLMKGAGRAFCSGGDVIALYQ 109 (269)
Q Consensus 44 ~~~~~~~v~~I~ln~p~~~-------------Nal~~~~~~eL~~~l~~~~-~d~~v~~vVltg~g~~F~~G~Dl~~~~~ 109 (269)
.+++..+++.++...|... +..-..+..||.+++..+. ++.++...++...|+. ..+..
T Consensus 271 ai~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~~~~~~t~g~~-------~~~~~ 343 (556)
T 2w3p_A 271 TIDRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVGTWVFRTEGDA-------RHLLA 343 (556)
T ss_dssp EEETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEESCH-------HHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHhHhhhhccCCH-------HHHhh
Confidence 3445567888888877531 2233557888866666665 5688999998877643 33221
Q ss_pred ----hhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEc-hhcchhh-HHHHHhCCEEEEeC-------CceEecCccc
Q 024298 110 ----LLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILD-GITMGCG-AGISLQGMYRVVTD-------KTVFSNPETQ 176 (269)
Q Consensus 110 ----~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~-G~a~GgG-~~Lal~cD~~ia~~-------~a~f~~pe~~ 176 (269)
.....+....++....+++.+.++.-...-.++.|. |.|+.|- +||+++||..++-+ ...+.+.+.+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (556)
T 2w3p_A 344 ADASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVN 423 (556)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCCEECCGGG
T ss_pred hHHHHHhccchHHHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCceeEeeccc
Confidence 112344455677778888899999999999999996 9997666 58999999998853 4799999999
Q ss_pred ccccCCCchHHHHHhhhhH-H-HH--HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 177 MGFHPDAGASFYLSHLPGY-L-GE--YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 177 ~Gl~p~~g~~~~l~r~~g~-~-a~--~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
+|.+|...+..+|.+..-. . .. --...|+++++++|.++|||+...++-+++++.+...+-.+.....+..-.+.=
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (556)
T 2w3p_A 424 FGLYPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDDIDWADEIRIALEERAAMSPDALTGLEAN 503 (556)
T ss_dssp GTTSCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCTTTHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred cCcccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCcccCChHHHHHHHHHHHhccCcchhccchhh
Confidence 9999998888888776422 2 11 123459999999999999999999999999998886555544444455444433
Q ss_pred h
Q 024298 253 L 253 (269)
Q Consensus 253 ~ 253 (269)
+
T Consensus 504 ~ 504 (556)
T 2w3p_A 504 L 504 (556)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.5e-07 Score=78.60 Aligned_cols=136 Identities=16% Similarity=0.026 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.++.++.+.+.+.|..++.++..+.|+|.=. |.|+++.. ...+...+...++|+++.
T Consensus 38 ~I~~~~a~~i~~~L~~l~~~~~~~~I~l~IN----SpGG~v~~-------------------~~~I~~~i~~~~~~v~t~ 94 (201)
T 3p2l_A 38 EVNDHSANLVIAQLLFLESEDPDKDIYFYIN----SPGGMVTA-------------------GMGVYDTMQFIKPDVSTI 94 (201)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHH-------------------HHHHHHHHHHSSSCEEEE
T ss_pred EECHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHH-------------------HHHHHHHHHHhCCCeEEE
Confidence 4788999999999999887655565555432 44555432 122444556678999999
Q ss_pred EchhcchhhHHHHHhCCE--EEEeCCceEecCcccccccCCCchHH------------------HHHhhhhH--H-HHHH
Q 024298 144 LDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGASF------------------YLSHLPGY--L-GEYL 200 (269)
Q Consensus 144 v~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~~g~--~-a~~l 200 (269)
+.|.|.++|..+++++|. |++.+++++.+....-|. .|-.. .+.+..|. . ..++
T Consensus 95 ~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~---~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~ 171 (201)
T 3p2l_A 95 CIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGF---RGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKD 171 (201)
T ss_dssp EEEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEE---EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred EcCEehhHHHHHHHcCccCCEEEcCCCeEEEecccccc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 999999999999999998 999999998776654221 11111 01112232 1 2344
Q ss_pred hccCCCCCHHHHHhcCccceeccCC
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNG 225 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~ 225 (269)
+-...-++|+||+++||||+|+++.
T Consensus 172 ~~~~~~lta~EA~e~GliD~I~~~~ 196 (201)
T 3p2l_A 172 TDRDNFMMADEAKAYGLIDHVIESR 196 (201)
T ss_dssp TSSCEEEEHHHHHHHTSCSEECCCS
T ss_pred hhcCeeecHHHHHHcCCccEecCCH
Confidence 4444557999999999999998863
|
| >1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=4.4e-07 Score=79.21 Aligned_cols=137 Identities=12% Similarity=0.022 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.++.++.+.+.+.|..++.++..+.|+|.=. |.|+++..- ..++..|...++||++.
T Consensus 90 ~I~d~~a~~iiaqL~~l~~ed~~k~I~L~IN----SPGGsV~ag-------------------~aIyd~I~~~k~pV~t~ 146 (277)
T 1tg6_A 90 PIDDSVASLVIAQLLFLQSESNKKPIHMYIN----SPGGVVTAG-------------------LAIYDTMQYILNPICTW 146 (277)
T ss_dssp SBCHHHHHHHHHHHHHHHHHCSSSCEEEEEE----ECCBCHHHH-------------------HHHHHHHHHSCSCEEEE
T ss_pred EECHHHHHHHHHHHHHHHhcCCCCCEEEEEE----CCCCCHHHH-------------------HHHHHHHHhcCCCEEEE
Confidence 3888899999999998866444566666533 445544321 12333455678999999
Q ss_pred EchhcchhhHHHHHhCCE--EEEeCCceEecCcccccccCCCchH-H-----------------HHHhhhhH--H-HHHH
Q 024298 144 LDGITMGCGAGISLQGMY--RVVTDKTVFSNPETQMGFHPDAGAS-F-----------------YLSHLPGY--L-GEYL 200 (269)
Q Consensus 144 v~G~a~GgG~~Lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~~-~-----------------~l~r~~g~--~-a~~l 200 (269)
+.|.|..+|..++++||. |++.+++.++.-....|. .|.. - .+.+..|. . ..++
T Consensus 147 v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~---~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~ 223 (277)
T 1tg6_A 147 CVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGA---RGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESA 223 (277)
T ss_dssp EEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCC---CSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred EccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccc---cCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999999998 999999998876543222 1111 0 01111222 1 2344
Q ss_pred hccCCCCCHHHHHhcCccceeccCCh
Q 024298 201 ALTGEKLNGVEMIACGLATHYTLNGV 226 (269)
Q Consensus 201 ~ltG~~i~a~eA~~~GLv~~vv~~~~ 226 (269)
+-.+..++++||+++||||+|....+
T Consensus 224 ~drd~~lta~EAle~GLID~I~~~~~ 249 (277)
T 1tg6_A 224 MERDRYMSPMEAQEFGILDKVLVHPP 249 (277)
T ss_dssp HSSCEEECHHHHHHHTSCSEECSSCC
T ss_pred HhcCcccCHHHHHHCCCCCEecCcch
Confidence 44456679999999999999987643
|
| >3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A | Back alignment and structure |
|---|
Probab=98.25 E-value=8.8e-06 Score=78.56 Aligned_cols=87 Identities=9% Similarity=-0.067 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEcCCCCcccc-CChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEEEchh
Q 024298 69 MVGRLKRLYESWEENPDIGFVLMKGAGRAFCSG-GDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGI 147 (269)
Q Consensus 69 ~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G-~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~ 147 (269)
...++.+.|+.+++|+.++.|+|.-. |.| .++... ..+++.+..+....|||||.+++
T Consensus 71 ~~~~i~~~L~~a~~d~~ik~I~L~in----spGgG~v~~~----------------~~I~~~i~~~k~~gkpvva~~~~- 129 (593)
T 3bf0_A 71 SLFDIVNTIRQAKDDRNITGIVMDLK----NFAGGDQPSM----------------QYIGKALKEFRDSGKPVYAVGEN- 129 (593)
T ss_dssp EHHHHHHHHHHHHHCTTCCCEEEECT----EEEECCHHHH----------------HHHHHHHHHHHHTTCCEEEEESC-
T ss_pred CHHHHHHHHHHHHhCCCceEEEEEeC----CCCCCcHHHH----------------HHHHHHHHHHHhcCCeEEEEEcc-
Confidence 46788899999999999999999865 445 555432 23444555555668999999876
Q ss_pred cchhhHHHHHhCCEEEEeCCceEecCccc
Q 024298 148 TMGCGAGISLQGMYRVVTDKTVFSNPETQ 176 (269)
Q Consensus 148 a~GgG~~Lal~cD~~ia~~~a~f~~pe~~ 176 (269)
+..+|+.|+.+||.+++.+.+.++...+.
T Consensus 130 aas~~y~lAsaad~i~~~P~~~vg~~g~~ 158 (593)
T 3bf0_A 130 YSQGQYYLASFANKIWLSPQGVVDLHGFA 158 (593)
T ss_dssp EEHHHHHHHTTSSEEEECTTCCEECCCCB
T ss_pred chhHHHHHHHhCCEEEECCCceEEEeccc
Confidence 67788999999999999999988886664
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=98.24 E-value=7.4e-06 Score=78.57 Aligned_cols=155 Identities=10% Similarity=0.017 Sum_probs=102.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (269)
|.++-.+..-..-++.....+.+.++++.+.+.. +-+|.|.- |.|+.+.+-....... ....+.+ .-+
T Consensus 107 v~v~a~D~t~~gGs~g~~~~~Ki~r~~e~A~~~~-lPvI~l~d-----SgGArlqe~~~~l~~~--~~~g~i~----~~~ 174 (587)
T 1pix_A 107 CVVVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLN-----CSGVKFDEQEKVYPNR--RGGGTPF----FRN 174 (587)
T ss_dssp EEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEEC-----CCEECGGGHHHHSSST--TSTTHHH----HHH
T ss_pred EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEe-----CCCCCccccchhcccc--ccHHHHH----HHH
Confidence 3444444444567889999999999999988764 45666664 5677775533221100 0001122 223
Q ss_pred HHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeC-CceEecCccc--ccccCCCchHHHHHhhhhH-HHHHHh-ccCC
Q 024298 131 YLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTD-KTVFSNPETQ--MGFHPDAGASFYLSHLPGY-LGEYLA-LTGE 205 (269)
Q Consensus 131 ~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~-~a~f~~pe~~--~Gl~p~~g~~~~l~r~~g~-~a~~l~-ltG~ 205 (269)
..+....+|+|++|.|+|.|||... ..||++|+++ ++.+++.-.. -++.|- ...+. .|.+++ .+|+
T Consensus 175 ~~ls~~giP~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~GP~vi~~~~~~--------~~~d~~~A~el~~~tge 245 (587)
T 1pix_A 175 AELNQLGIPVIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGGAGIMGGMNPK--------GHVDLEYANEIADMVDR 245 (587)
T ss_dssp HHHHHTTCCEEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCCCTTCCSCCSS--------SSCCHHHHHHHHHHHHT
T ss_pred HHHhCCCCCEEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecCHHHHhhhccc--------cccchhHHHHHHHHhCC
Confidence 4566789999999999999999999 9999998887 4888883331 111111 12455 478888 8888
Q ss_pred CCCHHH-----H--HhcCccceeccCCh
Q 024298 206 KLNGVE-----M--IACGLATHYTLNGV 226 (269)
Q Consensus 206 ~i~a~e-----A--~~~GLv~~vv~~~~ 226 (269)
.+++++ . .+.|++|.++++++
T Consensus 246 ~v~~e~lgga~~h~~~~GvvD~vv~~e~ 273 (587)
T 1pix_A 246 TGKTEPPGAVDIHYTETGFMREVYASEE 273 (587)
T ss_dssp TCCCCCSSBHHHHTTTSCCSCEEESSHH
T ss_pred ccChhhcccHHHHHhhcCceeEecCCHH
Confidence 887665 3 36999999999877
|
| >4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A | Back alignment and structure |
|---|
Probab=98.24 E-value=8.2e-06 Score=68.12 Aligned_cols=143 Identities=10% Similarity=0.034 Sum_probs=91.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCce--EEEEEcCCCCc-ccc---CChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCC
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIG--FVLMKGAGRAF-CSG---GDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFV 137 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~--~vVltg~g~~F-~~G---~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 137 (269)
.+|.++.+.+...|..++.++..+ .+.|.+.|..- -.| +|+. ....++..|...+
T Consensus 36 ~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~-------------------aglaIyd~m~~~~ 96 (205)
T 4gm2_A 36 PIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGIT-------------------DVISIVDVINYIS 96 (205)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHH-------------------HHHHHHHHHHHSS
T ss_pred EEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHH-------------------HHHHHHHHHHhcC
Confidence 489999999999999887543222 34445444110 000 2221 2223445566778
Q ss_pred CcEEEEEchhcchhhHHHHHhCC--EEEEeCCceEecCcccccccCC-CchH-H--------------HHHhhhhHH---
Q 024298 138 KPHVAILDGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPD-AGAS-F--------------YLSHLPGYL--- 196 (269)
Q Consensus 138 kp~Iaav~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~-~g~~-~--------------~l~r~~g~~--- 196 (269)
.||...+-|.|.+.|..|++++| .|++.+++++.+-....|..-+ ..-. . .+.+..|..
T Consensus 97 ~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~ 176 (205)
T 4gm2_A 97 SDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNV 176 (205)
T ss_dssp SCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred CCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999 5999999998876555443100 0000 0 111122321
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCC
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNG 225 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~ 225 (269)
-.+++-...-++|+||+++||||+|++.+
T Consensus 177 I~~~m~rd~~msa~EA~eyGlID~V~~~e 205 (205)
T 4gm2_A 177 ISNVLERDKYFNADEAVDFKLIDHILEKE 205 (205)
T ss_dssp HHHHTTSCEEEEHHHHHHTTSCSEECCC-
T ss_pred HHHHhcCCcccCHHHHHHcCCccEeecCC
Confidence 14445556779999999999999999754
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=98.14 E-value=6.5e-05 Score=71.13 Aligned_cols=139 Identities=10% Similarity=0.064 Sum_probs=94.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (269)
|.++..+..-..-++.....+.+.++++.+.+.. +-+|.|.- |.|+.+.+-. .....+.+.+....
T Consensus 107 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~~-lPvI~l~d-----SGGARmqeg~--------~sl~~~~~i~~~~~ 172 (531)
T 3n6r_B 107 VYVFSQDFTVLGGSVSETHSKKICKIMDMAMQNG-APVIGIND-----SGGARIQEGV--------DSLAGYGEVFQRNI 172 (531)
T ss_dssp EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEC-----CCCBCGGGTH--------HHHHHHHHHHHHHH
T ss_pred EEEEEECCCcccccccHHHHHHHHHHHHHHHHcC-CCEEEEeC-----CCccccCccc--------chhhhHHHHHHHHH
Confidence 3333444334667899999999999999887653 55666665 4555554311 11122233333332
Q ss_pred HHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC-ceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCH
Q 024298 131 YLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNG 209 (269)
Q Consensus 131 ~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a 209 (269)
+ +. -..|+|+++.|+|.|||......||++|+.++ +.+++. |++..+. .+|+.+++
T Consensus 173 ~-~s-~~iP~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i~~a--------------------GP~vI~~-~~ge~v~~ 229 (531)
T 3n6r_B 173 M-AS-GVVPQISMIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVT--------------------GPDVVKT-VTNEQVSA 229 (531)
T ss_dssp H-TT-TTSCEEEEECSCCBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHHH-HHCCCCCH
T ss_pred H-Hh-CCCCEEEEEeCCcchHHHHHhhhCCEEEEecCCceEeec--------------------CHHHHHH-HhCCccCh
Confidence 2 22 45999999999999999988888999999985 776652 2221111 47899999
Q ss_pred HHH-------HhcCccceeccCCh
Q 024298 210 VEM-------IACGLATHYTLNGV 226 (269)
Q Consensus 210 ~eA-------~~~GLv~~vv~~~~ 226 (269)
++. .+.|++|.++++++
T Consensus 230 E~LGGa~~h~~~sG~~d~v~~~e~ 253 (531)
T 3n6r_B 230 EELGGATTHTRKSSVADAAFENDV 253 (531)
T ss_dssp HHHHBHHHHHHTTSCCSEEESSHH
T ss_pred hhcchHHHHhhccCcceEEeCCHH
Confidence 998 89999999999855
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00011 Score=69.70 Aligned_cols=149 Identities=13% Similarity=0.077 Sum_probs=99.1
Q ss_pred eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAKSRAAILNRP-SNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~v~~I~ln~p-~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
+|.-..|.-++. -..-+++....+.+..+++.+.+. .+-+|.|.- |.|..+.+- ......+.+.+
T Consensus 95 ~Gr~v~v~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~d-----SgGaRmqEg--------~~~l~~~~~i~ 160 (530)
T 3iav_A 95 DGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKT-GCPVVGIND-----SGGARIQEG--------VASLGAYGEIF 160 (530)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSBCGGGT--------HHHHHHHHHHH
T ss_pred CCEEEEEEEECCCcceEeccHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCcchhhh--------hhhHHHHHHHH
Confidence 444333444444 467889999999999999998875 356677665 455555331 11122233333
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC-ceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCC
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGE 205 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~ 205 (269)
.... ++.. .+|+|++|.|+|.|||......||++|++++ +.+++. |+...+. .+|+
T Consensus 161 ~~~~-~~s~-~iP~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~~a--------------------GP~vi~~-~~ge 217 (530)
T 3iav_A 161 RRNT-HASG-VIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFIT--------------------GPDVIKT-VTGE 217 (530)
T ss_dssp HHHH-HTTT-TSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHHH-HHCC
T ss_pred HHHH-HHcC-CCCEEEEEecCcchHHHHHHHhCCEEEEecCCcEEEec--------------------CHHHHHH-HhCC
Confidence 3333 2333 3999999999999999988889999999885 888774 2222111 4788
Q ss_pred CCCHHHH-------HhcCccceeccCCh-HHHHHHH
Q 024298 206 KLNGVEM-------IACGLATHYTLNGV-RYTALYF 233 (269)
Q Consensus 206 ~i~a~eA-------~~~GLv~~vv~~~~-l~~~~~~ 233 (269)
.++++|. ...|++|.++++++ ..+.+++
T Consensus 218 ~v~~e~LGGa~~h~~~sGv~d~va~de~~a~~~~r~ 253 (530)
T 3iav_A 218 DVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQ 253 (530)
T ss_dssp CCCHHHHHBHHHHHHTSCCCSEEESSHHHHHHHHHH
T ss_pred cCChhhcchHHHHHhccCceeEEecChHHHHHHHHH
Confidence 8898876 68999999998864 4444333
|
| >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00018 Score=62.99 Aligned_cols=152 Identities=9% Similarity=0.038 Sum_probs=96.8
Q ss_pred eCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAK-SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~-v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
+|. |.++..|..-..-+++...-+.+.++++.+.+.. +-+|.+... .|+-..+- ... ......+
T Consensus 119 ~G~~V~v~a~d~~~~gGs~g~~~~~K~~r~ie~A~~~~-lPlI~l~ds-----gGar~qEG--------i~s-l~q~aki 183 (285)
T 2f9i_B 119 DGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENR-LPFILFSAS-----GGARMQEG--------IIS-LMQMGKT 183 (285)
T ss_dssp TTEEEEEEEECTTTGGGCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEE-----CSCCGGGH--------HHH-HHHHHHH
T ss_pred CCEEEEEEEEccccccCcCCHHHHHHHHHHHHHHHHcC-CCEEEEEeC-----CCcchhhh--------hhh-HhHHHHH
Confidence 343 4444333333557899999999999999888754 567777653 33322220 000 1122334
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHH-HHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCC
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAG-ISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGE 205 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~-Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~ 205 (269)
...+.++.....|.|+.+.|+|.||+.. +++.+|++++.+++.+++.... .....++... .-+
T Consensus 184 ~~~l~~~s~~~vP~Isvv~g~~~GG~~as~a~~~D~i~a~p~A~i~~aGP~-----------vi~~~~~~~~-----~e~ 247 (285)
T 2f9i_B 184 SVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRR-----------VIEQTINEKL-----PDD 247 (285)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCHH-----------HHHHHHTSCC-----CTT
T ss_pred HHHHHHHHcCCCCEEEEEeCCccHHHHHHhhhCCCEEEEeCCcEEEEcCHH-----------HHHHHhcccc-----hHh
Confidence 4455667778999999999999999965 4789999999999888774221 1112222110 111
Q ss_pred CCCHHHHHhcCccceeccCChHHHH
Q 024298 206 KLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 206 ~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
--+++.+.+.|+||.|++++++-+.
T Consensus 248 ~~~Ae~~~~~G~iD~Iv~~~e~r~~ 272 (285)
T 2f9i_B 248 FQTAEFLLEHGQLDKVVHRNDMRQT 272 (285)
T ss_dssp TTBHHHHHHTTCCSEECCGGGHHHH
T ss_pred HhhHHHHHhcCCccEEeChHHHHHH
Confidence 1247778899999999998876655
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00039 Score=65.91 Aligned_cols=144 Identities=14% Similarity=0.072 Sum_probs=96.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (269)
|.++..+-.-..-++.....+.+..+++.+.+. .+-+|.+.. |.|+.+.+-.. ....+.+.+..+.
T Consensus 97 v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~~-----SGGARmqeg~~--------sl~~~~~i~~~~~ 162 (523)
T 1on3_A 97 VHAASQDFTVMGGSAGETQSTKVVETMEQALLT-GTPFLFFYD-----SGGARIQEGID--------SLSGYGKMFFANV 162 (523)
T ss_dssp EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEE-----ECSBCGGGTHH--------HHHHHHHHHHHHH
T ss_pred EEEEEEcCCccCCcCcHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhhHHH--------HHHHHHHHHHHHH
Confidence 344444444467889999999999999998875 356677765 66776654221 1122333333333
Q ss_pred HHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCHH
Q 024298 131 YLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGV 210 (269)
Q Consensus 131 ~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~ 210 (269)
+ + .-..|.|+++.|+|.||+......||++|+.+++.+++. |++..+- .+|+.++.+
T Consensus 163 ~-~-s~~iP~Isvv~gp~~GG~a~s~~l~D~ii~~~~a~i~~a--------------------GP~vI~~-~~ge~~~~e 219 (523)
T 1on3_A 163 K-L-SGVVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFIT--------------------GPQVIKS-VTGEDVTAD 219 (523)
T ss_dssp H-H-TTTSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESS--------------------CHHHHHH-HHCCCCCHH
T ss_pred H-h-cCCCCEEEEEcCCCchHHHHHHhhCCeEEEeCCCEEEec--------------------CHHHHHH-HhCCcCChH
Confidence 2 2 345999999999999999998899999999999888776 2221111 356777764
Q ss_pred -----HHH--hcCccceeccCCh-HHHHH
Q 024298 211 -----EMI--ACGLATHYTLNGV-RYTAL 231 (269)
Q Consensus 211 -----eA~--~~GLv~~vv~~~~-l~~~~ 231 (269)
|.+ +.|++|.++++++ ..+.+
T Consensus 220 ~lggae~h~~~~G~vd~vv~d~~~~~~~~ 248 (523)
T 1on3_A 220 ELGGAEAHMAISGNIHFVAEDDDAAELIA 248 (523)
T ss_dssp HHHSHHHHHHTTCCCSEEESSHHHHHHHH
T ss_pred hcccHHHHhhccCceEEEeCCHHHHHHHH
Confidence 333 6999999999653 44443
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00069 Score=64.20 Aligned_cols=147 Identities=12% Similarity=0.052 Sum_probs=96.9
Q ss_pred eCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAK-SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~-v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
+|. |.++..|-.-..-++.....+.+..+++.+.+. .+-+|.+.. |.|+.+.+-.. ....+.+.+
T Consensus 89 ~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~~P~I~l~~-----SGGaRmqeg~~--------sl~~~~~i~ 154 (522)
T 1x0u_A 89 DGRTVFAYAQDFTVLGGSLGETHANKIVRAYELALKV-GAPVVGIND-----SGGARIQEGAL--------SLEGYGAVF 154 (522)
T ss_dssp TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSBCGGGTHH--------HHHHHHHHH
T ss_pred CCEEEEEEEecCceeCccccHHHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCChhHHHH--------HHHHHHHHH
Confidence 443 333344333366789999999999999998875 456777775 56776654221 112233333
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC-c-eEecCcccccccCCCchHHHHHhhhhHHHHHHhccC
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-T-VFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTG 204 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~-a-~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG 204 (269)
..+.+ + .-..|.|+++.|+|.||+......||++|+.++ + .+++. |++..+- .+|
T Consensus 155 ~~~~~-~-s~~iP~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~~a--------------------GP~vI~~-~~g 211 (522)
T 1x0u_A 155 KMNVM-A-SGVIPQITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMFVT--------------------GPEITKV-VLG 211 (522)
T ss_dssp HHHHH-H-TTTSCEEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEESS--------------------CHHHHHH-TTC
T ss_pred HHHHH-h-CCCCcEEEEEcCCCchHHHHHHhcCCeEEEecCCccEEEec--------------------CHHHHHH-HhC
Confidence 33332 2 345999999999999999998899999999997 7 77662 2221111 367
Q ss_pred CCCCHH-----HHH--hcCccceeccCCh-HHHHH
Q 024298 205 EKLNGV-----EMI--ACGLATHYTLNGV-RYTAL 231 (269)
Q Consensus 205 ~~i~a~-----eA~--~~GLv~~vv~~~~-l~~~~ 231 (269)
+.++.+ |.+ +.|++|.++++++ ..+.+
T Consensus 212 e~~~~e~lggae~~~~~~G~~d~vv~~~~~~~~~~ 246 (522)
T 1x0u_A 212 EEVSFQDLGGAVVHATKSGVVHFMVDSEQEAINLT 246 (522)
T ss_dssp CCCCHHHHHBHHHHHHTTCCCSEEESCHHHHHHHH
T ss_pred CcCChhhcchHHHHhhcCceeEEEeCCHHHHHHHH
Confidence 777764 333 6999999999653 44443
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00079 Score=64.09 Aligned_cols=142 Identities=10% Similarity=0.030 Sum_probs=94.5
Q ss_pred EEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHH
Q 024298 52 RAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVY 131 (269)
Q Consensus 52 ~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 131 (269)
.++-.+-.-..-++.....+.+..+++.+.+. .+-+|.|.. |.|+.+.+-.. ....+.+.+..+.+
T Consensus 111 ~v~a~D~t~~gGS~g~~~~~Ki~ra~e~A~~~-~lP~I~l~d-----SGGARmqeg~~--------sl~~~~~i~~~~~~ 176 (548)
T 2bzr_A 111 CIFSQDATVFGGSLGEVYGEKIVKVQELAIKT-GRPLIGIND-----GAGARIQEGVV--------SLGLYSRIFRNNIL 176 (548)
T ss_dssp EEEEECTTSGGGCCCHHHHHHHHHHHHHHHHH-TCCEEEEEC-----CCSCCGGGTTH--------HHHHHHHHHHHHHH
T ss_pred EEEEEcCccccCCCChhHHHHHHHHHHHHHHc-CCCEEEEEc-----CCCCCchhHHH--------HHHHHHHHHHHHHH
Confidence 33333333367789999999999999998875 356777776 56666654211 11223333333332
Q ss_pred HHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC-ceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCHH
Q 024298 132 LQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGV 210 (269)
Q Consensus 132 ~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~ 210 (269)
+ .-..|.|+++.|+|.||+......||++|+.++ +.+++. |++..+. .+|+.++.+
T Consensus 177 -~-s~~iP~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~~a--------------------GP~vI~~-~~ge~v~~e 233 (548)
T 2bzr_A 177 -A-SGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT--------------------GPDVIKT-VTGEEVTME 233 (548)
T ss_dssp -T-TTTSCEEEEECSEEESGGGHHHHHSSEEEEETTTCEEESS--------------------CHHHHHH-HHCCCCCHH
T ss_pred -h-cCCCcEEEEecCCCchHHHHHHHhCCeEEeccCceeEEec--------------------cHHHHHH-HhCCcCChH
Confidence 2 345999999999999999988889999999996 887775 2221111 357777764
Q ss_pred -----HHH--hcCccceeccCCh-HHHH
Q 024298 211 -----EMI--ACGLATHYTLNGV-RYTA 230 (269)
Q Consensus 211 -----eA~--~~GLv~~vv~~~~-l~~~ 230 (269)
|.+ +.|++|.++++++ ..+.
T Consensus 234 ~lggae~h~~~sG~~d~vv~d~~~~~~~ 261 (548)
T 2bzr_A 234 ELGGAHTHMAKSGTAHYAASGEQDAFDY 261 (548)
T ss_dssp HHHBHHHHHHTSSCCSEEESSHHHHHHH
T ss_pred hcccHHHHhhccCceeEEeCCHHHHHHH
Confidence 333 6999999998653 4444
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00034 Score=66.53 Aligned_cols=145 Identities=16% Similarity=0.103 Sum_probs=92.9
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (269)
|.++..+..-+.-++.....+.+..+++.+.+.. +-+|.|.-. .|..+.+-...... .....+.+. -+
T Consensus 123 v~V~a~D~tv~gGS~g~~~~~Ki~ra~e~A~~~~-lPvI~l~dS-----gGARl~~q~~~~~~--~~~~~~i~~----~~ 190 (555)
T 3u9r_B 123 CMIVGNDATVKGGTYYPLTVKKHLRAQAIALENR-LPCIYLVDS-----GGANLPRQDEVFPD--REHFGRIFF----NQ 190 (555)
T ss_dssp EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEECC-----CCBCGGGGGGTSSS--TTSTTHHHH----HH
T ss_pred EEEEEECCccccCCCCHHHHHHHHHHHHHHHHcC-CCEEEEECC-----CCCCCCCcceeecc--cccHHHHHH----HH
Confidence 3334444334667899999999999999988763 556666653 33433210000000 000011112 22
Q ss_pred HHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeC-CceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCH
Q 024298 131 YLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTD-KTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNG 209 (269)
Q Consensus 131 ~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a 209 (269)
..+.....|+|++|.|+|.|||......||++|+.+ ++.+.+. |+...+. .+|+.+++
T Consensus 191 ~~ls~~giP~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i~~a--------------------GP~vik~-~~ge~~~~ 249 (555)
T 3u9r_B 191 ANMSARGIPQIAVVMGSCTAGGAYVPAMSDETVMVREQATIFLA--------------------GPPLVKA-ATGEVVSA 249 (555)
T ss_dssp HHHHHTTCCEEEEECSCCBGGGGHHHHTSSEEEEETTTCBCBSS--------------------CHHHHHH-HHCCCCCH
T ss_pred HHHhcCCCCEEEEEecCCCccHHHHHHhCCceEEecCCceEEEc--------------------cHHHHHH-HhcCccCh
Confidence 345567899999999999999999999999988876 4544431 1111111 47899999
Q ss_pred HHH-------HhcCccceeccCChHH
Q 024298 210 VEM-------IACGLATHYTLNGVRY 228 (269)
Q Consensus 210 ~eA-------~~~GLv~~vv~~~~l~ 228 (269)
++. ...|++|.++++++..
T Consensus 250 e~LGGa~~h~~~sGv~d~v~~de~~a 275 (555)
T 3u9r_B 250 EELGGADVHCKVSGVADHYAEDDDHA 275 (555)
T ss_dssp HHHHBHHHHHHTTCSCSEEESSHHHH
T ss_pred hhccchhhhhhccCceeEEeCCHHHH
Confidence 998 7899999999876643
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0019 Score=61.31 Aligned_cols=146 Identities=12% Similarity=0.080 Sum_probs=92.7
Q ss_pred eCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAK-SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~-v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
+|. |.++-.+..-+.-++.....+.+.++++.+.+.. +-+|.+.- |.|+.+.+-.. ....+.+.+
T Consensus 96 ~Gr~v~v~a~D~t~~gGS~g~~~~~Ki~r~~e~A~~~~-lPvI~l~d-----SgGAR~qeg~~--------~l~g~~~~~ 161 (527)
T 1vrg_A 96 NGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGIND-----SGGARIQEGVD--------ALAGYGEIF 161 (527)
T ss_dssp TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTHH--------HHHHHHHHH
T ss_pred CCEEEEEEEEeccccCccccHHHHHHHHHHHHHHHHcC-CCEEEEEC-----CCCCCccchhH--------HHHHHHHHH
Confidence 444 3444444333677899999999999999887653 45666655 44555543111 112223333
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC-ceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCC
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGE 205 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~ 205 (269)
..... . ....|+|++|.|+|.|||......||++|+.++ +.+++. |++..+. .+|+
T Consensus 162 ~~~~~-~-s~~iP~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~i~~a--------------------GP~vi~~-~~ge 218 (527)
T 1vrg_A 162 LRNTL-A-SGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFIT--------------------GPNVIKA-VTGE 218 (527)
T ss_dssp HHHHH-H-TTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSS--------------------CHHHHHH-HHCC
T ss_pred HHHHH-h-CCCCCEEEEEeCCCchHHHHHHHcCCeEEEecCceEEEec--------------------CHHHHHH-HhCC
Confidence 33322 2 456999999999999999988889999999997 765442 2222111 3567
Q ss_pred CCCHH-----HHH--hcCccceeccCCh-HHHH
Q 024298 206 KLNGV-----EMI--ACGLATHYTLNGV-RYTA 230 (269)
Q Consensus 206 ~i~a~-----eA~--~~GLv~~vv~~~~-l~~~ 230 (269)
.++.+ |.+ +.|++|.++++++ ..+.
T Consensus 219 ~v~~e~lggae~~~~~~G~vd~vv~d~~~~~~~ 251 (527)
T 1vrg_A 219 EISQEDLGGAMVHNQKSGNAHFLADNDEKAMSL 251 (527)
T ss_dssp CCCHHHHHBHHHHHHTSCCCSEEESSHHHHHHH
T ss_pred CCCccccccHHHHhhcccceEEEecCHHHHHHH
Confidence 77653 333 6999999999654 4443
|
| >1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00099 Score=63.13 Aligned_cols=155 Identities=10% Similarity=-0.007 Sum_probs=94.9
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHH
Q 024298 54 AILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYL 132 (269)
Q Consensus 54 I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (269)
|.-|++. ..-+++.+..+...+.++.+... .+-+|.|.-. .|..+..-. +.....+...+++..
T Consensus 329 via~d~~~~gG~l~~~~~~K~ar~i~~a~~~-~~Plv~l~ds-----~G~~~G~~~---------E~~G~~~~~Ak~l~~ 393 (522)
T 1x0u_A 329 IVANNPEEFGGSIDIDAADKAARFIRFCDAF-NIPLISLVDT-----PGYVPGTDQ---------EYKGIIRHGAKMLYA 393 (522)
T ss_dssp EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-----CCBCCSHHH---------HHTTHHHHHHHHHHH
T ss_pred EEEECCCccCCCcCHHHHHHHHHHHHHHhhC-CCCEEEEecC-----CCCCCchHH---------HHHHHHHHHHHHHHH
Confidence 3344443 33579999999999999988764 4566666653 343332111 111222344456777
Q ss_pred HccCCCcEEEEEchhcchhhHHHHH----hCCEEEEeCCceEecCcccccccCCCchHHHHHhhh-hH-----HH-HHHh
Q 024298 133 QGTFVKPHVAILDGITMGCGAGISL----QGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLP-GY-----LG-EYLA 201 (269)
Q Consensus 133 i~~~~kp~Iaav~G~a~GgG~~Lal----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~-g~-----~a-~~l~ 201 (269)
+.....|.|+.|-|.|.|||+.-.. .+|++++.+++.+++-... |++..+.+.. -. .. .++.
T Consensus 394 ~~~~~vP~Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~A~i~v~gpe-------gaa~Il~r~~i~~~~d~~~~~~~l~ 466 (522)
T 1x0u_A 394 FAEATVPKITVIVRKSYGGAHIAMSIKSLGADLVYAWPTAEIAVTGPE-------GAVRILYRKEIQQASNPDDVLKQRI 466 (522)
T ss_dssp HHHCCSCEEEEEEEEEEHHHHHHTCCGGGTCSEEEECTTCEEESSCHH-------HHHHHHTSSSSSSSSSSSSSSHHHH
T ss_pred HHhCCCCEEEEEeCCcccHHHHHhcccccCCCEEEEeCCCEEEecCHH-------HHHHHHhhhhhhcccCHHHHHHHHH
Confidence 7889999999999999999875443 4999999999887763322 1222221110 00 00 0111
Q ss_pred c--cCCCCCHHHHHhcCccceeccCChHHHH
Q 024298 202 L--TGEKLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 202 l--tG~~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
- .-.--++..+.+.|+||.|+++.++-+.
T Consensus 467 ~~y~~~~~~~~~~~~~G~iD~II~p~~tR~~ 497 (522)
T 1x0u_A 467 AEYRKLFANPYWAAEKGLVDDVIEPKDTRRV 497 (522)
T ss_dssp HHHHHHHSSSHHHHHTTSSSEECCGGGHHHH
T ss_pred HHHHHhcCCHHHHHhcCCCcEeECHHHHHHH
Confidence 0 0012455779999999999999887765
|
| >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.019 Score=54.43 Aligned_cols=155 Identities=10% Similarity=0.008 Sum_probs=93.9
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHH
Q 024298 54 AILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYL 132 (269)
Q Consensus 54 I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (269)
|.=|+|. ..-.++.+-.....+.++.++.. .+-+|.|.-. ..|..|.+-+. ....+...+++..
T Consensus 334 via~~~~~~~G~~~~~~~~Kaar~i~~a~~~-~~Plv~lvDt-pG~~~G~~~E~-------------~g~~~~~A~~~~a 398 (527)
T 1vrg_A 334 IVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-PGYLPGVAQEH-------------GGIIRHGAKLLYA 398 (527)
T ss_dssp EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH-------------TTHHHHHHHHHHH
T ss_pred EEEEcCcccCCCCCHHHHHHHHHHHHHHhhc-CCCeEEEecC-CCCcCchhhHH-------------hHHHHHHHHHHHH
Confidence 3444443 22469999999999999888653 4455555432 23433332211 2233445556777
Q ss_pred HccCCCcEEEEEchhcchhhHHHHHh----CCEEEEeCCceEecCcccccccCCCchHHHHHhhh-h----HH-H-HHHh
Q 024298 133 QGTFVKPHVAILDGITMGCGAGISLQ----GMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLP-G----YL-G-EYLA 201 (269)
Q Consensus 133 i~~~~kp~Iaav~G~a~GgG~~Lal~----cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~-g----~~-a-~~l~ 201 (269)
+.....|+|+.|-|.|.|||+.-... +|+++|.++++++. .++-|++..+.+.- - .. . .++.
T Consensus 399 ~~~~~vP~isvI~g~~~gGg~~am~~~~~~~d~~~a~p~a~~~V-------m~pegaa~Il~r~~~~~~~d~~~~~~~~~ 471 (527)
T 1vrg_A 399 YSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAV-------MGPEGAANIIFKREIEASSNPEETRRKLI 471 (527)
T ss_dssp HHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTHHHHHHSSCHHHHHHHHH
T ss_pred HhcCCCCEEEEEeCCcccHHHHHhcCCCCCCCEEEEcCCCeEEe-------cCHHHHHHHHhhhhhhcccCHHHHHHHHH
Confidence 78899999999999999887743322 78888887776654 33333333332221 1 11 1 1121
Q ss_pred --ccCCCCCHHHHHhcCccceeccCChHHHH
Q 024298 202 --LTGEKLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 202 --ltG~~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
+.-+.-++..+.+.|+||.|+++.+.-+.
T Consensus 472 ~~y~~~~~~p~~~~~~g~iD~II~p~~tR~~ 502 (527)
T 1vrg_A 472 EEYKQQFANPYIAASRGYVDMVIDPRETRKY 502 (527)
T ss_dssp HHHHHHTSSHHHHHHTTSSSEECCGGGHHHH
T ss_pred HHHHHhhCCHHHHHHcCCCCeeeCHHHHHHH
Confidence 11123667889999999999999876655
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.019 Score=54.96 Aligned_cols=164 Identities=10% Similarity=0.013 Sum_probs=94.3
Q ss_pred eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAKSRAAILNRP-SNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~v~~I~ln~p-~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
+|.-..|.-++. -+.-+++....+.+.++++.+.+.. +-+|.|.-. .|+.+.+-.... .......+. +
T Consensus 104 ~Gr~V~V~a~D~tv~gGS~g~~~~~Ki~Ra~e~A~~~~-lPvI~l~dS-----gGArl~~qe~~~--~~l~~~g~i---f 172 (588)
T 3gf3_A 104 DGKWVYIVASDNKKMAGAWVPGQAENLIRCSDAAKMMH-LPLIYLLNC-----SGVEFPNQDKVY--PNRRGGGTP---F 172 (588)
T ss_dssp TTEEEEEEEECTTSGGGCBCTTHHHHHHHHHHHHHHHT-CCEEEEECC-----CCBCGGGHHHHS--SSTTSTTHH---H
T ss_pred CCEEEEEEEECCcccCCCCCHHHHHHHHHHHHHHHHcC-CCEEEEEcC-----CCcCcccccccc--cchhhHHHH---H
Confidence 343333333433 3567888999999999999987653 556666653 444442100000 000000111 1
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCccc--ccccCCCchHHHHHhh---hhHHH-HHH
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ--MGFHPDAGASFYLSHL---PGYLG-EYL 200 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~--~Gl~p~~g~~~~l~r~---~g~~a-~~l 200 (269)
+ -...+.....|+|++|.|.|.|||...++++|++++.+++.+++.... -|+.|.+ ...+.- +.... .+-
T Consensus 173 ~-~~~~ls~~~iP~Isvv~Gp~~gGgAy~a~~~~vim~~~~a~i~~aGP~vI~~~~p~g---~~~~~~~~~~~~~~~ge~ 248 (588)
T 3gf3_A 173 F-RNSELNQLGIPVIVGIYGTNPAGGGYHSISPTILIAHQDANMAVGGAGILSGMNPKG---YIDDEAAEQIIAAQIENS 248 (588)
T ss_dssp H-HHHHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESSCCC------------------CHHHHHHHHHHH
T ss_pred H-HHHHHhcCCCCEEEEEeCCCCchhhhHhhCCeEEEEECCcEEEecChhhhcccCccc---cccccchhhhhhhhcccc
Confidence 1 223345578999999999999998866888888888889998885443 1211211 001110 11111 222
Q ss_pred hccCCCCCHHHHH--hcCccceeccCCh
Q 024298 201 ALTGEKLNGVEMI--ACGLATHYTLNGV 226 (269)
Q Consensus 201 ~ltG~~i~a~eA~--~~GLv~~vv~~~~ 226 (269)
..+-+.+.+.+.+ ..|++|.++++++
T Consensus 249 ~vs~eeLGGa~~h~~~sGv~d~~a~de~ 276 (588)
T 3gf3_A 249 KLKVPAPGSVPIHYDETGFFREVYQNDL 276 (588)
T ss_dssp HTTCCCTTBHHHHTTTSCCSCEEESSHH
T ss_pred ccChhhccchhhhccccccceEEeCCHH
Confidence 2466778777777 5899999998775
|
| >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.032 Score=53.42 Aligned_cols=153 Identities=10% Similarity=-0.007 Sum_probs=98.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEE
Q 024298 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (269)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~I 141 (269)
.-.++.+-.....+.++.++. ..+-+|.|.-. ..|..|.+-+ .....+...+++..+.....|+|
T Consensus 384 ~G~l~~~~a~Kaarfi~~c~~-~~iPlv~lvDt-pGf~~G~~~E-------------~~Gi~~~gA~~~~a~a~a~vP~i 448 (587)
T 1pix_A 384 GGKLYRQGLVKMNEFVTLCAR-DRLPIVWIQDT-TGIDVGNDAE-------------KAELLGLGQSLIYSIQTSHIPQF 448 (587)
T ss_dssp TTEECHHHHHHHHHHHHHHHH-TTCCEEEEECC-CEECCSHHHH-------------HTTHHHHHHHHHHHHHTCCCCEE
T ss_pred CCCcCHHHHHHHHHHHHHhhc-CCCCeEEEecC-CCCCCcHHHH-------------HHHHHHHHHHHHHHHHhCCCCEE
Confidence 356899999999999987765 44555655543 3455544222 23355677778889999999999
Q ss_pred EEEchhcchhhHHHHHh-----C--CEEEEeCCceEecCcccccccCCCchHHHHHhhhhH------------HH--HHH
Q 024298 142 AILDGITMGCGAGISLQ-----G--MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY------------LG--EYL 200 (269)
Q Consensus 142 aav~G~a~GgG~~Lal~-----c--D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~------------~a--~~l 200 (269)
+.|-|.+.|||+ ++++ . |+++|.++++++. ..+-|++..+.+.--. .+ .++
T Consensus 449 tvI~g~~~Ggg~-~am~~~~~~~~~d~~~a~p~A~~~V-------m~pegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~ 520 (587)
T 1pix_A 449 EITLRKGTAAAH-YVLGGPQGNDTNAFSIGTAATEIAV-------MNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNL 520 (587)
T ss_dssp EEECSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEES-------SCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred EEEcCCCccHHH-HHhcCcccCcccceeeeccCCeEec-------CCHHHHHHHHHhhhhhhhhhcCCChHHHHHHHHHH
Confidence 999999998874 5555 4 8888888877764 3223333323221100 00 111
Q ss_pred h--ccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhh
Q 024298 201 A--LTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCV 238 (269)
Q Consensus 201 ~--ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~ 238 (269)
. +. +..++..|.+.|+||.|+++.+.-.....+-...
T Consensus 521 ~~~y~-~~~~p~~aa~~g~iD~VI~p~~tR~~l~~~L~~~ 559 (587)
T 1pix_A 521 IQAFY-TKSRPKVCAELGLVDEIVDMNKIRGYVEAFTEAA 559 (587)
T ss_dssp HHHHH-HTTSHHHHHHHTSSSEECCTTTHHHHHHHHHHHH
T ss_pred HHHHH-HhCCHHHHHhcCCCccccCHHHHHHHHHHHHHHH
Confidence 0 11 2478899999999999999987766544433333
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0084 Score=58.67 Aligned_cols=70 Identities=10% Similarity=0.177 Sum_probs=51.1
Q ss_pred CCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCC--CHHH--
Q 024298 136 FVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKL--NGVE-- 211 (269)
Q Consensus 136 ~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i--~a~e-- 211 (269)
...|+|+.|.|+|.|||..+...||++|+.+++.+.+. |...+... +|+.+ +.+|
T Consensus 245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~s~iflt-----------GP~vIk~~----------tGeeV~~s~eeLG 303 (758)
T 3k8x_A 245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT-----------GAPAINKM----------LGREVYTSNLQLG 303 (758)
T ss_dssp TTSCEEEEECSCEETHHHHHHHHTCEEEEETTCCEESS-----------CHHHHHHH----------HTSCCCSCTHHHH
T ss_pred cCCCEEEEEccCCchHHHHHHhhCCEEEEECCceEEEe-----------CHHHHHHH----------hCCccccCchhcc
Confidence 57899999999999999999999999999998654432 11212222 56655 4333
Q ss_pred ----HHhcCccceeccCCh
Q 024298 212 ----MIACGLATHYTLNGV 226 (269)
Q Consensus 212 ----A~~~GLv~~vv~~~~ 226 (269)
...-|.+|.++++++
T Consensus 304 GA~vh~~sGvad~va~dd~ 322 (758)
T 3k8x_A 304 GTQIMYNNGVSHLTAVDDL 322 (758)
T ss_dssp SHHHHTTTTSSSEEESSHH
T ss_pred hhhHHHhcCCeeEEecCHH
Confidence 246899999998764
|
| >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.013 Score=55.44 Aligned_cols=155 Identities=10% Similarity=-0.022 Sum_probs=95.0
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHH
Q 024298 54 AILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYL 132 (269)
Q Consensus 54 I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (269)
|.=|+|. ....++.+-.....+.++.++.. .+-+|.|.-. ..|..|.+-++ ....+...+++..
T Consensus 330 vian~~~~~~G~~~~~~a~Kaar~i~~~~~~-~iPlv~lvDt-pGf~~G~~~E~-------------~Gi~~~~A~~l~a 394 (523)
T 1on3_A 330 IVANQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV-PGFLPGVQQEY-------------GGIIRHGAKMLYA 394 (523)
T ss_dssp EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH-------------TTHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeC-CCcCcchHHHH-------------hhHHHHHHHHHHH
Confidence 3444543 22469999999999999888653 3445544432 34555443221 2334556667777
Q ss_pred HccCCCcEEEEEchhcchhhHHHHHh----CCEEEEeCCceEecCcccccccCCCchHHHHHhhh-h----HH-H-HHHh
Q 024298 133 QGTFVKPHVAILDGITMGCGAGISLQ----GMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLP-G----YL-G-EYLA 201 (269)
Q Consensus 133 i~~~~kp~Iaav~G~a~GgG~~Lal~----cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~-g----~~-a-~~l~ 201 (269)
+.....|+|+.|-|.+.|||+.-... +|+++|.+++.++ +.++-|++..+.+.- . .. . .++.
T Consensus 395 ~a~~~vP~itvI~g~~~Ggg~~am~~~~~~~d~~~a~p~a~~~-------Vm~pegaa~Il~r~~~~~~~d~~~~~~~~~ 467 (523)
T 1on3_A 395 YSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDAMRAEKI 467 (523)
T ss_dssp HHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHHHHHHHH
T ss_pred HhcCCCCEEEEEeCCcccHHHHHhcccCCCCCEEEEcCCCeEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHH
Confidence 88899999999999999988754433 7888887776665 433333333332221 1 01 1 1121
Q ss_pred c--cCCCCCHHHHHhcCccceeccCChHHHH
Q 024298 202 L--TGEKLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 202 l--tG~~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
- .-..-++..+.+.|+||.|+++.+.-+.
T Consensus 468 ~~y~~~~~~p~~~a~~g~iD~II~p~~tR~~ 498 (523)
T 1on3_A 468 EEYQNAFNTPYVAAARGQVDDVIDPADTRRK 498 (523)
T ss_dssp HHHHHHHSSHHHHHHTTSSSEECCGGGHHHH
T ss_pred HHHHHhhCCHHHHHhcCCCCEeeCHHHHHHH
Confidence 1 1112566889999999999999776655
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.014 Score=57.51 Aligned_cols=70 Identities=11% Similarity=0.106 Sum_probs=51.5
Q ss_pred CCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCC--CH----
Q 024298 136 FVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKL--NG---- 209 (269)
Q Consensus 136 ~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i--~a---- 209 (269)
...|+|+.|.|.|.|||..++..||++|+.+++.+.+.. ...+... +|+.+ +.
T Consensus 258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~a~i~ltG-----------p~vi~~~----------~Ge~vy~s~e~LG 316 (793)
T 2x24_A 258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVENSHIILTG-----------ATALNKV----------LGRDVYTSNNQLG 316 (793)
T ss_dssp HHSCEEEEECSEEETHHHHHHHHTCCEEEETTCEEESSC-----------HHHHHHH----------HSSCCCSCHHHHH
T ss_pred CCCCEEEEEecCCchHHHHHHhhCCeEEEeccccEEecC-----------HHHHHHh----------cCCcccCChhhhc
Confidence 469999999999999999999999999999987665541 1112222 34444 32
Q ss_pred --HHHHhcCccceeccCCh
Q 024298 210 --VEMIACGLATHYTLNGV 226 (269)
Q Consensus 210 --~eA~~~GLv~~vv~~~~ 226 (269)
+-+...|++|.+++++.
T Consensus 317 Ga~v~~~~Gv~d~vv~dd~ 335 (793)
T 2x24_A 317 GVQIMHHNGVSHVTVPDDF 335 (793)
T ss_dssp SHHHHTTTTSCSEEESSHH
T ss_pred cHHHHHhcCceEEEeCCHH
Confidence 22567999999998744
|
| >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.062 Score=50.81 Aligned_cols=156 Identities=10% Similarity=0.103 Sum_probs=97.8
Q ss_pred EEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHH
Q 024298 52 RAAILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (269)
Q Consensus 52 ~~I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (269)
.-|.=|+|. ..-.++.+-.....+.++.++.. .+-+|.|.-.. .|..|.+-+ .....+...+++
T Consensus 334 Vgvian~~~~~~G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtp-Gf~~G~~~E-------------~~gi~~~~Ak~l 398 (530)
T 3iav_A 334 VGIVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDVP-GFLPGVDQE-------------HDGIIRRGAKLI 398 (530)
T ss_dssp EEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEEC-CBCCCHHHH-------------HTTHHHHHHHHH
T ss_pred EEEEEecCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeeCC-CCCccHHHH-------------HhhHHHHHHHHH
Confidence 334455553 22469999999999999877654 35555555432 255554322 234556777788
Q ss_pred HHHccCCCcEEEEEchhcchhhHHHHHh-----CCEEEEeCCceEecCcccccccCCCchHHHHHhh-h-----hHHH--
Q 024298 131 YLQGTFVKPHVAILDGITMGCGAGISLQ-----GMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHL-P-----GYLG-- 197 (269)
Q Consensus 131 ~~i~~~~kp~Iaav~G~a~GgG~~Lal~-----cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~-----g~~a-- 197 (269)
..+.....|+|+.|-|.+.|||+ ++++ .|+++|.+++.++. .++-|++..+.+. + ...+
T Consensus 399 ~a~a~a~vP~itvI~g~~~GGa~-~am~~~~~~~d~~~awp~a~~~V-------m~~egaa~il~r~~~~~~~~d~~~~~ 470 (530)
T 3iav_A 399 FAYAEATVPLITVITRKAFGGAY-VVMGSKHLGADLNLAWPTAQIAV-------MGAQGAVNILHRRTIADAGDDAEATR 470 (530)
T ss_dssp HHHHHCCSCEEEEEEEEEEHHHH-HHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTSTTTSTTCTTCHHHH
T ss_pred HHHHhCCCCEEEEEeCCcchHHH-HHhcCCCCCCCEEEEcCCceEec-------CCHHHHHHHHhhhhhhhcccCHHHHH
Confidence 88899999999999999998766 5554 69999988877765 2222222222211 0 0000
Q ss_pred HHHh--ccCCCCCHHHHHhcCccceeccCChHHHH
Q 024298 198 EYLA--LTGEKLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 198 ~~l~--ltG~~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
.++. +.-+.-++..|.+.|+||.|+++.+.-..
T Consensus 471 ~~~~~~y~~~~~~p~~aa~~~~vD~VIdP~~TR~~ 505 (530)
T 3iav_A 471 ARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRH 505 (530)
T ss_dssp HHHHHHHHHHHSSSHHHHHTTSSSEECCGGGHHHH
T ss_pred HHHHHHHHHhcCCHHHHHhcCCCCcccCHHHHHHH
Confidence 1111 11112366778899999999999987765
|
| >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.024 Score=53.91 Aligned_cols=155 Identities=12% Similarity=0.096 Sum_probs=93.3
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHH
Q 024298 54 AILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYL 132 (269)
Q Consensus 54 I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (269)
|.=|+|. ..-.++.+-.....+.++.++.. .+-+|.|--. ..|..|.+-++ ....+....++..
T Consensus 351 vian~~~~~~G~l~~~~a~Kaar~i~~a~~~-~iPlv~lvDt-~Gf~~G~~~E~-------------~Gi~~~ga~~l~a 415 (548)
T 2bzr_A 351 IVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PGFLPGTDQEY-------------NGIIRRGAKLLYA 415 (548)
T ss_dssp EEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHHH-------------TTHHHHHHHHHHH
T ss_pred EEEECCcccCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEeec-cCCCCChHHHH-------------hhHHHHHHHHHHH
Confidence 3344443 22479999999999999988654 3455554432 33444443222 2233445556677
Q ss_pred HccCCCcEEEEEchhcchhhHHHH----HhCCEEEEeCCceEecCcccccccCCCchHHHHHhh-h----h---H-HH--
Q 024298 133 QGTFVKPHVAILDGITMGCGAGIS----LQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHL-P----G---Y-LG-- 197 (269)
Q Consensus 133 i~~~~kp~Iaav~G~a~GgG~~La----l~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~----g---~-~a-- 197 (269)
+.....|+|+.|-|.|.|||+.-. +.+|++++.++++++. ..+-|+...+.+. . . . .+
T Consensus 416 ~~~~~VP~isvI~g~~~Ggg~~am~~~~~~~d~~~awp~a~i~V-------mgpegaa~Il~r~~~~~~~~~g~~~~~~~ 488 (548)
T 2bzr_A 416 YGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAV-------MGASGAVGFVYRQQLAEAAANGEDIDKLR 488 (548)
T ss_dssp HHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHTCCC----------CHHHH
T ss_pred HhCCCCCEEEEEeCCcchHHHHHhccccCCCCEEEEcCCCEEEe-------cCHHHHHHHHhhhHHhhhhcccccHHHHH
Confidence 778999999999999999887543 2389998888877765 2222233223221 1 0 0 00
Q ss_pred HHHhc--cCCCCCHHHHHhcCccceeccCChHHHH
Q 024298 198 EYLAL--TGEKLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 198 ~~l~l--tG~~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
.++.- .-..-++..+.+.|+||.|+++.+.-+.
T Consensus 489 ~~~~~~y~~~~~~p~~~a~~g~iD~II~p~~tR~~ 523 (548)
T 2bzr_A 489 LRLQQEYEDTLVNPYVAAERGYVGAVIPPSHTRGY 523 (548)
T ss_dssp HHHHHHHHHHHSBSHHHHHTTSSSEECCGGGHHHH
T ss_pred HHHHHHHHHhhCCHHHHHhcCCCceeeCHHHHHHH
Confidence 11111 0012345779999999999999776654
|
| >3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.13 Score=48.72 Aligned_cols=154 Identities=10% Similarity=0.083 Sum_probs=94.9
Q ss_pred EEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHH
Q 024298 54 AILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYL 132 (269)
Q Consensus 54 I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (269)
|.=|+|. ..-.++.+-.....+.++.++.. .+-+|.|.-. ..|..|.+-+ .....+...+++..
T Consensus 342 vian~~~~~~G~l~~~~a~Kaarfi~lcd~~-~iPlv~lvDt-pGf~~G~~~E-------------~~Gi~~~gAk~l~a 406 (531)
T 3n6r_B 342 VVANQPLVLAGCLDIDSSRKAARFVRFCDAF-EIPLLTLIDV-PGFLPGTSQE-------------YGGVIKHGAKLLYA 406 (531)
T ss_dssp EEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CSBCCSHHHH-------------HTTHHHHHHHHHHH
T ss_pred EEEecccccCCCCCHHHHHHHHHHHHHhhcc-CCCEEEEeCC-CCCCCCHHHH-------------HhhHHHHHHHHHHH
Confidence 4445554 22468999998888888877654 3555555433 2344443222 23345666778888
Q ss_pred HccCCCcEEEEEchhcchhhHHHHH----hCCEEEEeCCceEecCcccccccCCCchHHHHHhh-h---h-H--HHHHHh
Q 024298 133 QGTFVKPHVAILDGITMGCGAGISL----QGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHL-P---G-Y--LGEYLA 201 (269)
Q Consensus 133 i~~~~kp~Iaav~G~a~GgG~~Lal----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~---g-~--~a~~l~ 201 (269)
+.....|+|+.|-|.+.|||+.-.. .+|+++|.++++++. .++-|++..+.+. + - . ...+.
T Consensus 407 ~a~a~VP~itvI~g~~~Ggg~~am~~~~~~~d~~~awp~A~i~V-------m~pegaa~Il~r~~~~~~~~~~~~~~~y- 478 (531)
T 3n6r_B 407 YGEATVPMVTVITRKAYGGAYVVMSSKHLRADFNYAWPTAEVAV-------MGAKGATEIIHRGDLGDPEKIAQHTADY- 478 (531)
T ss_dssp HHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEES-------SCHHHHHHHHCCTTTTSTTHHHHHHHHH-
T ss_pred HHhCCCCEEEEEcCCccchhhhhccCccCCCCeEEEcCCceEec-------CCHHHHHHHHhcccccchhHHHHHHHHH-
Confidence 8899999999999999998874333 289998888877665 2222222222211 1 0 1 11111
Q ss_pred ccCCCCCHHHHHhcCccceeccCChHHHHH
Q 024298 202 LTGEKLNGVEMIACGLATHYTLNGVRYTAL 231 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~ 231 (269)
.-+.-++..|.+.|+||.|+++.+.-...
T Consensus 479 -~~~~~~p~~aa~~~~vD~vIdP~~TR~~l 507 (531)
T 3n6r_B 479 -EERFANPFVASERGFVDEVIQPRSTRKRV 507 (531)
T ss_dssp -HHHHSSSHHHHHHTSSSEECCGGGHHHHH
T ss_pred -HHHhcCHHHHHhcCccCcccCHHHHHHHH
Confidence 11123555678899999999999877653
|
| >3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B | Back alignment and structure |
|---|
Probab=95.18 E-value=0.85 Score=43.29 Aligned_cols=146 Identities=11% Similarity=0.004 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEE
Q 024298 63 NALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Ia 142 (269)
-.++.+-.....+.++.++.. .+-+|.|.-.. .|..|.+-+ .....+...+++..+.....|+|+
T Consensus 366 G~l~~~~a~Kaarfi~~c~~~-~iPlv~lvDtp-Gf~~G~~~E-------------~~Gi~~~gAk~~~a~~~a~vP~it 430 (555)
T 3u9r_B 366 GILFAEAAQKGAHFIELACQR-GIPLLFLQNIT-GFMVGQKYE-------------AGGIAKHGAKLVTAVACARVPKFT 430 (555)
T ss_dssp SSBCHHHHHHHHHHHHHHHHH-TCCEEEEEEEC-CBCCSHHHH-------------HTTHHHHHHHHHHHHHHCCSCEEE
T ss_pred CccCHHHHHHHHHHHHHHhcC-CCCEEEEecCc-CCCCCHHHH-------------HHHHHHHHHHHHHHHHhCCCCEEE
Confidence 578999888888888887653 35666665432 344443222 123345666788889999999999
Q ss_pred EEchhcchhhHHHHHh-----CCEEEEeCCceEecCcccccccCCCchHHHHHhh----h---h-----H-H-H-HH-Hh
Q 024298 143 ILDGITMGCGAGISLQ-----GMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHL----P---G-----Y-L-G-EY-LA 201 (269)
Q Consensus 143 av~G~a~GgG~~Lal~-----cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~----~---g-----~-~-a-~~-l~ 201 (269)
.|-|.+.|||. ++++ +|++++.+++.++.- .+-+++..+... + | . . + ++ +.
T Consensus 431 vi~g~~~Ggg~-~am~~~~~~~d~~~a~p~A~i~Vm-------gpegaa~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 502 (555)
T 3u9r_B 431 VLIGGSFGAGN-YGMCGRAYDPRFLWMWPNARIGVM-------GGEQAAGVLAQVKREQAERAGQQLGVEEEAKIKAPIL 502 (555)
T ss_dssp EEEEEEETTHH-HHTTCGGGCCSEEEECTTCEEESS-------CHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred EEeCCccchhh-HhhcCccCCCCeEEEcCCcEEEcC-------CHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHHHH
Confidence 99999988865 3443 799998888777642 222222222110 0 0 0 0 0 00 00
Q ss_pred -ccCCCCCHHHHHhcCccceeccCChHHHHH
Q 024298 202 -LTGEKLNGVEMIACGLATHYTLNGVRYTAL 231 (269)
Q Consensus 202 -ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~ 231 (269)
..-+..++..|-+.|+||.|+++.+.-...
T Consensus 503 ~~y~~~~~p~~aa~r~~vD~vIdP~~TR~~l 533 (555)
T 3u9r_B 503 EQYEHQGHPYYSSARLWDDGVIDPAQTREVL 533 (555)
T ss_dssp HHHHHHHSHHHHHHTTSSSCBCCGGGHHHHH
T ss_pred HHHHHhCCHHHHhhccccCcccChHHHHHHH
Confidence 001124667777899999999999877653
|
| >3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.29 Score=46.76 Aligned_cols=150 Identities=9% Similarity=0.035 Sum_probs=95.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEE
Q 024298 63 NALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Ia 142 (269)
..++.+-...-.+.++..+.. .+-+|.|.-. ..|..|.+-+ .....+...+++..+....+|+|+
T Consensus 387 G~l~~~~a~Kaarfi~lcd~f-~iPlv~lvDt-pGf~~G~~aE-------------~~Gi~~~gAk~l~a~a~a~VP~it 451 (588)
T 3gf3_A 387 GKLYRQGLIKMNEFVTLCARD-RIPLIWLQDT-TGIDVGDEAE-------------KAELLGLGQSLIYSIENSKLPSLE 451 (588)
T ss_dssp TEECHHHHHHHHHHHHHHHHT-TCCEEEEECC-CEECCSHHHH-------------HTTHHHHHHHHHHHHHHHCSCEEE
T ss_pred CCcCHHHHHHHHHHHHHhhhc-CCCeEEEecC-CCCCCCHHHH-------------HHHHHHHHHHHHHHHHhCCCCEEE
Confidence 367888888888888887764 4556665533 4455554322 233456677788889999999999
Q ss_pred EEchhcchhhHHHHHhC-------CEEEEeCCceEecCcccccccCCCchHHHHH-hhhh-----------------HHH
Q 024298 143 ILDGITMGCGAGISLQG-------MYRVVTDKTVFSNPETQMGFHPDAGASFYLS-HLPG-----------------YLG 197 (269)
Q Consensus 143 av~G~a~GgG~~Lal~c-------D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~-r~~g-----------------~~a 197 (269)
.|-|.+.|||. +++++ |+++|.+++.++. .++-|+...+. +.+- ...
T Consensus 452 vI~g~~~Ggg~-~am~~~~~~~~~~~~~awp~A~~sV-------m~pEgaa~Il~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (588)
T 3gf3_A 452 ITIRKASAAAH-YVLGGPQGNNTNVFSIGTGACEYYV-------MPGETAANAMYSRKLVKAKKAGEDLQPIIGKMNDMI 523 (588)
T ss_dssp EESSEEETTHH-HHTTCTTCTTTEEEEEECTTCEEES-------SCHHHHHHHHHHHHHHHC-------CHHHHHHHHHH
T ss_pred EEcCCccHHHH-HHhcccccCCccceEEECCCceEEe-------CCHHHHHHHHhhhHHhhhhccccccchHHHHHHHHH
Confidence 99999988765 55553 3677777766654 33323333222 2111 000
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhh
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCV 238 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~ 238 (269)
.++ . +..++.-|-+.|+||.|+++.+.-.....+...+
T Consensus 524 ~~y--~-~~~~p~~aA~r~~vD~VIdP~~TR~~l~~~~~~~ 561 (588)
T 3gf3_A 524 QMY--T-DKSRPKYCTEKGMVDEIVDMTEVRPYIQAFTEAA 561 (588)
T ss_dssp HHH--H-HTTSHHHHHHTTSSSEECCGGGHHHHHHHHHHHH
T ss_pred HHH--H-HhCCHHHHHhcCCCCeeeCHHHHHHHHHHHHHHH
Confidence 111 1 2357888899999999999998876544443333
|
| >2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A* | Back alignment and structure |
|---|
Probab=89.84 E-value=2.4 Score=41.81 Aligned_cols=95 Identities=7% Similarity=0.089 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEE
Q 024298 63 NALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Ia 142 (269)
-.++++-.....+.++.++. ..+-+|.|.-. ..|..|.+-+ .....+....++..+.....|+|+
T Consensus 462 G~l~~~~a~KaarfI~~cd~-f~iPlv~LvDt-pGf~~G~~aE-------------~~Gi~~~gAkll~A~a~a~VP~it 526 (793)
T 2x24_A 462 QVWFPDSAYKTAQAIKDFNR-EKLPLMIFANW-RGFSGGMKDM-------------YDQVLKFGAYIVDGLRKYRQPVLI 526 (793)
T ss_dssp TEECHHHHHHHHHHHHHHHT-TTCCEEEECCB-CEECCSHHHH-------------HTTHHHHHHHHHHHHHTCCSCEEE
T ss_pred CcccHHHHHHHHHHHHHhcc-CCCCEEEEecC-CCCCCCHHHH-------------HhhHHHHHHHHHHHHHhcCCCEEE
Confidence 36899999999999998864 44555555432 4555554322 234556777788899999999999
Q ss_pred EE--chhcchhhHHHH---HhCCE--EEEeCCceEec
Q 024298 143 IL--DGITMGCGAGIS---LQGMY--RVVTDKTVFSN 172 (269)
Q Consensus 143 av--~G~a~GgG~~La---l~cD~--~ia~~~a~f~~ 172 (269)
.| .|.+.||++.++ +..|+ ++|.++++++.
T Consensus 527 vI~r~Ge~~GGa~~~~~~~~~~d~~ev~Awp~A~~~V 563 (793)
T 2x24_A 527 YIPPYAEVRGGSWAVMDTSINPLCIEMYADRESRASV 563 (793)
T ss_dssp EECTTCEEEHHHHHTTCGGGSTTTEEEEEETTCEEES
T ss_pred EEecCCcccchhHHhhhcccCccHHHHhhhccCEEEe
Confidence 99 898877665332 23455 45555555543
|
| >3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A | Back alignment and structure |
|---|
Probab=80.90 E-value=7 Score=38.33 Aligned_cols=95 Identities=8% Similarity=0.111 Sum_probs=65.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEE
Q 024298 63 NALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Ia 142 (269)
..++++-.....+.++.++....+-+|.|.- -..|..|.+-+ .....+....++..+.....|+|+
T Consensus 447 G~l~pe~a~KaArfI~lcd~~f~iPLv~LvD-tpGf~~G~~aE-------------~~Gi~k~gAkll~A~a~a~VP~it 512 (758)
T 3k8x_A 447 QVWHPNSAFKTAQAINDFNNGEQLPMMILAN-WRGFSGGQRDM-------------FNEVLKYGSFIVDALVDYKQPIII 512 (758)
T ss_dssp TEECHHHHHHHHHHHHHHHHTSCCCEEECCC-CCEECCSHHHH-------------HTTHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCCEEEEec-CCCCCCCHHHH-------------HccHHHHHHHHHHHHHhCCCCEEE
Confidence 4688899998889998887634455555443 24566665332 234556777788899999999999
Q ss_pred EEc--hhcchhhHHHHHh----CCE--EEEeCCceEec
Q 024298 143 ILD--GITMGCGAGISLQ----GMY--RVVTDKTVFSN 172 (269)
Q Consensus 143 av~--G~a~GgG~~Lal~----cD~--~ia~~~a~f~~ 172 (269)
.|- |.+.||++ ++++ +|+ ++|.+++.++.
T Consensus 513 VI~RkGe~~GGA~-~am~~~~~ad~~~v~Awp~A~isV 549 (758)
T 3k8x_A 513 YIPPTGELRGGSW-VVVDPTINADQMEMYADVNARAGV 549 (758)
T ss_dssp EECTTCEEETHHH-HTTCGGGSTTTEEEEEETTCEEES
T ss_pred EEecCCccchHHH-HHhCcccCCCHHHHhcCCCCEEEc
Confidence 998 99988776 5554 454 66666655544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 269 | ||||
| d1mj3a_ | 260 | c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat | 7e-26 | |
| d1uiya_ | 253 | c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The | 9e-17 | |
| d1dcia_ | 275 | c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2 | 5e-13 | |
| d2f6qa1 | 245 | c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-C | 2e-11 | |
| d1q52a_ | 297 | c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter | 4e-11 | |
| d1hzda_ | 266 | c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [T | 1e-10 | |
| d1pjha_ | 266 | c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2 | 2e-09 | |
| d1nzya_ | 269 | c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Ps | 2e-08 | |
| d1wdka4 | 310 | c.14.1.3 (A:1-310) Fatty oxidation complex alpha s | 2e-08 | |
| d2fw2a1 | 258 | c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Hum | 2e-06 | |
| d1szoa_ | 249 | c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus | 6e-04 | |
| d2a7ka1 | 230 | c.14.1.3 (A:1-230) Carbapenem biosynthes protein C | 6e-04 | |
| d1wz8a1 | 263 | c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TT | 8e-04 |
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 100 bits (249), Expect = 7e-26
Identities = 46/178 (25%), Positives = 86/178 (48%), Gaps = 10/178 (5%)
Query: 43 VLVE--GRAKSRAAI-LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFC 99
++ E G+ S I LNRP LNAL ++ L + E++EE+P +G +++ G +AF
Sbjct: 6 IITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFA 65
Query: 100 SGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQG 159
+G D+ ++ N + + F + + + KP +A ++G +G G +++
Sbjct: 66 AGADI---KEMQNRTFQDCYSGKFLSHWDHIT---RIKKPVIAAVNGYALGGGCELAMMC 119
Query: 160 MYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACG 216
+K F PE +G P AG + L+ G L + LTG++++ + G
Sbjct: 120 DIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAG 177
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Score = 75.5 bits (184), Expect = 9e-17
Identities = 42/167 (25%), Positives = 76/167 (45%), Gaps = 1/167 (0%)
Query: 55 ILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG 114
LN P N L+ M L + + E +P + V++ G G+AF +G D+ L ++ G
Sbjct: 13 FLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELG 72
Query: 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPE 174
E++++ + F + T+ KP VA ++G + GAG++L V+ ++ E
Sbjct: 73 AEENYRHSLSLMRLFHRVY-TYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTE 131
Query: 175 TQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGVEMIACGLATHY 221
++GF + + + + L LTG + E A GL
Sbjct: 132 VKIGFVAALVSVILVRAVGEKAAKDLLLTGRLVEAREAKALGLVNRI 178
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 65.2 bits (157), Expect = 5e-13
Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 7/147 (4%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
LNRP NA+N + L ++ ++ D V++ GAG+ F SG D++ + + +
Sbjct: 19 LNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPP 78
Query: 116 -------FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKT 168
++ + + KP +A + G +G G + R T
Sbjct: 79 GDDVARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDA 138
Query: 169 VFSNPETQMGFHPDAGASFYLSHLPGY 195
F E +G D G L + G
Sbjct: 139 FFQVKEVDVGLAADVGTLQRLPKVIGN 165
|
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (145), Expect = 2e-11
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 55 ILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG 114
+ NRP NA+NT M + R ++ ++ I V + G G + SG D+ + G
Sbjct: 17 MFNRPKKKNAINTEMYHEIMRALKAASKDDSIITV-LTGNGDYYSSGNDLTNFTDIPPGG 75
Query: 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPE 174
E KN L +FV F KP +A+++G +G + +D+ F P
Sbjct: 76 VEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPF 135
Query: 175 TQMGFHPDAGASFYLSH 191
+ +G P+ +S+
Sbjct: 136 SHLGQSPEGCSSYTFPK 152
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 59.8 bits (143), Expect = 4e-11
Identities = 28/155 (18%), Positives = 50/155 (32%), Gaps = 15/155 (9%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
NRP NA V L R+ + +PD+G VL+ G G + GG
Sbjct: 35 FNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRG 94
Query: 116 FEDFKN--------------FFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMY 161
++ + + L K + +++G G G + +
Sbjct: 95 RSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDL 154
Query: 162 RVVT-DKTVFSNPETQMGFHPDAGASFYLSHLPGY 195
+ + + F + +G S YL+ G
Sbjct: 155 TLASREYARFKQTDADVGSFDGGYGSAYLARQVGQ 189
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.2 bits (139), Expect = 1e-10
Identities = 30/167 (17%), Positives = 65/167 (38%), Gaps = 4/167 (2%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115
+NR N+L+ +++ L + ++ + + + ++++ G + +
Sbjct: 21 INRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGAD---LKERAKMS 77
Query: 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPET 175
+ F + + P +A +DG+ +G G ++L RV ET
Sbjct: 78 SSEVGPFVSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVET 137
Query: 176 QMGFHPDAGASFYL-SHLPGYLGEYLALTGEKLNGVEMIACGLATHY 221
++ P G + L + L + L + L+G E A GL +H
Sbjct: 138 KLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHV 184
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.3 bits (129), Expect = 2e-09
Identities = 29/189 (15%), Positives = 51/189 (26%), Gaps = 9/189 (4%)
Query: 41 DQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCS 100
+++ L P NLNAL L L E + N D+ F +++ +GR F S
Sbjct: 5 EKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSS 64
Query: 101 GGDVIALYQLLNEGKFED-------FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGA 153
G D + + + + NF K + L+G +G A
Sbjct: 65 GADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSA 124
Query: 154 GISLQGMYRVVTDKTVFSNPETQMGFHPD--AGASFYLSHLPGYLGEYLALTGEKLNGVE 211
+ + V+ + +
Sbjct: 125 ALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLPLKFGTNTTYECLMFNKPFKYDI 184
Query: 212 MIACGLATH 220
M G +
Sbjct: 185 MCENGFISK 193
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Score = 52.1 bits (123), Expect = 2e-08
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 1/141 (0%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNE-G 114
+ P + NAL+ + + EE+ +G V++ GA AFC+G + + G
Sbjct: 18 IKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAG 77
Query: 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPE 174
+ F+ +Q ++ +P +A ++G+ G G GISL + D F
Sbjct: 78 VRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAW 137
Query: 175 TQMGFHPDAGASFYLSHLPGY 195
+G D S+ L+ + G
Sbjct: 138 HTIGIGNDTATSYSLARIVGM 158
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Score = 51.6 bits (122), Expect = 2e-08
Identities = 24/135 (17%), Positives = 51/135 (37%), Gaps = 1/135 (0%)
Query: 57 NRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKF 116
+ ++N N + L++ ++ + + + V++ F G D+ +
Sbjct: 24 LKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKL-PD 82
Query: 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ 176
+ + P VA ++GI +G G + L +RV+ D PE +
Sbjct: 83 AELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVK 142
Query: 177 MGFHPDAGASFYLSH 191
+G +P G + L
Sbjct: 143 LGIYPGFGGTVRLPR 157
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 2e-06
Identities = 38/141 (26%), Positives = 54/141 (38%), Gaps = 1/141 (0%)
Query: 55 ILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG 114
+ R + NALNT ++ + S + D VL AG FC G D + L
Sbjct: 17 LSTRSTEKNALNTEVIKEMVNALNSAAAD-DSKLVLFSAAGSVFCCGLDFGYFVRHLRND 75
Query: 115 KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPE 174
+ +T+ FV F KP V ++G +G GA I +K F P
Sbjct: 76 RNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPY 135
Query: 175 TQMGFHPDAGASFYLSHLPGY 195
T G PD +S + G
Sbjct: 136 TTFGQSPDGCSSITFPKMMGK 156
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} Length = 249 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Score = 38.2 bits (87), Expect = 6e-04
Identities = 1/32 (3%), Positives = 8/32 (25%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIG 87
++ ++ L + + +
Sbjct: 28 VHTEGKSLVWTSTAHDELAYCFHDIACDRENK 59
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Score = 37.9 bits (86), Expect = 6e-04
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 56 LNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLM 91
L+ P+ N + ++ +K + + V++
Sbjct: 15 LDHPNKHNPFSRTLETSVKDALARANADDSVRAVVV 50
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Score = 37.9 bits (86), Expect = 8e-04
Identities = 13/57 (22%), Positives = 22/57 (38%)
Query: 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFC 99
+ I R LNA+ ++ L R++ E + VL++G G F
Sbjct: 11 LAFAWPRPGVLEITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFS 67
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 269 | |||
| d2f6qa1 | 245 | Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human ( | 100.0 | |
| d2fw2a1 | 258 | Chromodomain protein CDY2A {Human (Homo sapiens) [ | 100.0 | |
| d1mj3a_ | 260 | Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve | 100.0 | |
| d1nzya_ | 269 | 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., | 100.0 | |
| d1wz8a1 | 263 | Probable enoyl-CoA hydratase TTHA0218 {Thermus the | 100.0 | |
| d2a7ka1 | 230 | Carbapenem biosynthes protein CarB {Pectobacterium | 100.0 | |
| d1pjha_ | 266 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1wdka4 | 310 | Fatty oxidation complex alpha subunit, N-terminal | 100.0 | |
| d1szoa_ | 249 | 6-oxo camphor hydrolase {Rhodococcus erythropolis | 100.0 | |
| d1uiya_ | 253 | Enoyl-CoA hydratase (crotonase) {Thermus thermophi | 100.0 | |
| d1ef8a_ | 261 | Methylmalonyl CoA decarboxylase {Escherichia coli | 100.0 | |
| d1sg4a1 | 249 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1dcia_ | 275 | Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso | 100.0 | |
| d1hzda_ | 266 | AUH protein {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1q52a_ | 297 | Naphthoate synthase MenB {Mycobacterium tuberculos | 100.0 | |
| d2cbya1 | 179 | Clp protease, ClpP subunit {Mycobacterium tubercul | 98.36 | |
| d1yg6a1 | 183 | Clp protease, ClpP subunit {Escherichia coli [TaxI | 98.31 | |
| d2f6ia1 | 190 | Clp protease, ClpP subunit {Plasmodium falciparum | 98.21 | |
| d1y7oa1 | 192 | Clp protease, ClpP subunit {Streptococcus pneumoni | 98.2 | |
| d1on3a1 | 253 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 98.1 | |
| d2f9yb1 | 263 | Acetyl-coenzyme A carboxylase carboxyl transferase | 98.04 | |
| d2a7sa1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 98.03 | |
| d1tg6a1 | 193 | Clp protease, ClpP subunit {Human (Homo sapiens), | 97.99 | |
| d1xnya1 | 258 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.98 | |
| d1vrga1 | 251 | Propionyl-CoA carboxylase complex B subunit, PccB | 97.91 | |
| d1pixa2 | 287 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 97.57 | |
| d2f9ya1 | 316 | Acetyl-coenzyme A carboxylase carboxyl transferase | 97.39 | |
| d1vrga2 | 264 | Propionyl-CoA carboxylase complex B subunit, PccB | 96.82 | |
| d1uyra1 | 333 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 96.82 | |
| d2a7sa2 | 271 | Propionyl-CoA carboxylase complex B subunit, PccB | 96.73 | |
| d1xnya2 | 263 | Propionyl-CoA carboxylase complex B subunit, PccB | 96.23 | |
| d1on3a2 | 264 | Methylmalonyl-CoA carboxyltransferase (transcarbox | 96.06 | |
| d1pixa3 | 299 | Glutaconyl-CoA decarboxylase A subunit {Acidaminoc | 95.39 | |
| d1uyra2 | 404 | Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc | 91.1 |
| >d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-50 Score=347.70 Aligned_cols=213 Identities=21% Similarity=0.271 Sum_probs=185.3
Q ss_pred cCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhH
Q 024298 40 QDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDF 119 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~ 119 (269)
|++|.++++|+|++|+||||++.|++|.+|+.+|.++++.++.|+.+ +||++|.|++||+|+|+.++............
T Consensus 2 ~~~i~~~~~~gi~~Itlnrp~~~Nals~~~~~~l~~~l~~~~~d~~v-~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~ 80 (245)
T d2f6qa1 2 FETLVVTSEDGITKIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKA 80 (245)
T ss_dssp CSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHH
T ss_pred cceEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCce-EEeecCCCccccCCccchhhhccccccccccc
Confidence 67899999999999999999999999999999999999999999877 89999999999999999998764322223344
Q ss_pred HHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HH
Q 024298 120 KNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GE 198 (269)
Q Consensus 120 ~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~ 198 (269)
......+.+++.++.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. ++
T Consensus 81 ~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~~g~~~a~ 160 (245)
T d2f6qa1 81 KNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKAT 160 (245)
T ss_dssp HHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETTCEEECCTGGGTCCCCTTHHHHHHHHHCHHHHH
T ss_pred chhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhccCeEecccccCCCCccccchhhcccccccchhh
Confidence 55566678899999999999999999999999999999999999999999999999999999999999999999985 89
Q ss_pred HHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
+++++|+.++|+||+++||||+|+|++++++++.+.+...++.|..+....|.+.
T Consensus 161 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~l 215 (245)
T d2f6qa1 161 EMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVI 215 (245)
T ss_dssp HHHTTCCCEEHHHHHHTTSCSEEECTTTHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred hhcccccccccccccccccccccCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999977777666665554555444433
|
| >d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Chromodomain protein CDY2A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-49 Score=345.55 Aligned_cols=211 Identities=23% Similarity=0.298 Sum_probs=189.1
Q ss_pred cCcEEEEEeCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhh
Q 024298 40 QDQVLVEGRAKSRAAILN-RPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFED 118 (269)
Q Consensus 40 ~~~v~~~~~~~v~~I~ln-~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~ 118 (269)
|++|.++++++|++|++| ||+++|++|.+|+.+|.++++.++.|+ +++|||||.|++||+|+|+.++...........
T Consensus 1 y~~i~v~~~~gi~~i~l~~rp~~~Nals~~~~~el~~al~~~~~d~-~~~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~ 79 (258)
T d2fw2a1 1 YRDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEMVNALNSAAADD-SKLVLFSAAGSVFCCGLDFGYFVRHLRNDRNTA 79 (258)
T ss_dssp CCSEEEEEETTEEEEEECCSSSSTTCBCHHHHHHHHHHHHHHHHSS-CSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHH
T ss_pred CceEEEEEECCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHcCC-CEEEEEecCccccccccccchhhhcccccccch
Confidence 678999999999999998 699999999999999999999998874 699999999999999999999876544444445
Q ss_pred HHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-H
Q 024298 119 FKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-G 197 (269)
Q Consensus 119 ~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a 197 (269)
..++.+.++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +
T Consensus 80 ~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~ig~~~a 159 (258)
T d2fw2a1 80 SLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASA 159 (258)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHCHHHH
T ss_pred hhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecccceeeccccccccccccccccchhhcCcccc
Confidence 567778889999999999999999999999999999999999999999999999999999999999999999999996 8
Q ss_pred HHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHH
Q 024298 198 EYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNC 251 (269)
Q Consensus 198 ~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 251 (269)
++++++|++++|+||+++||||+|||++++++++.+.+...+..|..+....|.
T Consensus 160 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~i~~~~~~a~~~~K~ 213 (258)
T d2fw2a1 160 NEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNAIVLEECKA 213 (258)
T ss_dssp HHHHTTCCEEEHHHHHHTTSCSEEECSTTHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred chhhccCcccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999777666665555444444443
|
| >d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=9.4e-50 Score=347.54 Aligned_cols=208 Identities=20% Similarity=0.294 Sum_probs=183.7
Q ss_pred ccCcEEEEEe---CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCC
Q 024298 39 LQDQVLVEGR---AKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGK 115 (269)
Q Consensus 39 ~~~~v~~~~~---~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~ 115 (269)
-|+.|.++++ |+|++||||||++.|++|.+|+.+|.++|+.++.|+++++|||||.|++||+|.|+.++...
T Consensus 2 ~~~~i~~e~~g~~~~I~~itlnrP~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~F~aG~Dl~~~~~~----- 76 (260)
T d1mj3a_ 2 NFQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNR----- 76 (260)
T ss_dssp CCSSEEEEEESGGGCEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTC-----
T ss_pred CCeEEEEEEEcCCCCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccchhhhhhcc-----
Confidence 3788999986 48999999999999999999999999999999999999999999999999999999987542
Q ss_pred hhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH
Q 024298 116 FEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY 195 (269)
Q Consensus 116 ~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~ 195 (269)
.....+...+..++..+..+||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|.
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~ig~ 155 (260)
T d1mj3a_ 77 -TFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGK 155 (260)
T ss_dssp -CHHHHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECGGGGGTCCCCSSTTTHHHHHHCH
T ss_pred -chhhhhHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCCCEEECchhccCcCCcccHHHHHHHHhCH
Confidence 1123344556677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 196 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
. +++++++|++|+++||+++|||++|++++++++.+.+.+...+..+..+....|+.
T Consensus 156 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~i~~~~~~a~~~~K~~ 213 (260)
T d1mj3a_ 156 SLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCAEKIANNSKIIVAMAKES 213 (260)
T ss_dssp HHHHHHHHHCCCEEHHHHHHHTSCSEEECTTTHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHcCcccCchhhccCCCceeeecccccccccccccccccchhhHHHHHHHHH
Confidence 5 89999999999999999999999999999999997777666666655555555543
|
| >d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 4-Chlorobenzoyl-CoA dehalogenase species: Pseudomonas sp., strain CBS-3 [TaxId: 306]
Probab=100.00 E-value=3.5e-49 Score=346.11 Aligned_cols=214 Identities=19% Similarity=0.195 Sum_probs=189.5
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhc-cCChh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLN-EGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~-~~~~~ 117 (269)
||+.|.++.+|+|++||||||++.|++|.+|+.+|.++++.+++|+++++|||||.|++||+|+|+.++..... ....+
T Consensus 1 my~~i~~~i~dgVa~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~i~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~ 80 (269)
T d1nzya_ 1 MYEAIGHRVEDGVAEITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRD 80 (269)
T ss_dssp CCSSEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHH
T ss_pred CCCceEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCcccccchhhHHHHhhcccccchhh
Confidence 78999999999999999999999999999999999999999999999999999999999999999998743211 11122
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
........++.++.++.++||||||+|||+|+|||++|+++||+||++++++|++||.++|+.|++|+++++++++|..
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~~~~~g~~~~~g~~~~l~~~ig~~~ 160 (269)
T d1nzya_ 81 HFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADSAKFVCAWHTIGIGNDTATSYSLARIVGMRR 160 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhhhhhcccccccccccccccccccccccChhh
Confidence 3344455677899999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
+++++++|+.|+|+||+++||||+|+|++++++++.+.+...+..|..+.+..|..
T Consensus 161 a~~l~ltg~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~ 216 (269)
T d1nzya_ 161 AMELMLTNRTLYPEEAKDWGLVSRVYPKDEFREVAWKVARELAAAPTHLQVMAKER 216 (269)
T ss_dssp HHHHHHHCCCBCHHHHHHHTSCSCEECHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhhccccccccchhHHHHcCCccccccccccccchhhhhhhhhhhhHHHHHHHHHH
Confidence 89999999999999999999999999999999998877766666655555555543
|
| >d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Probable enoyl-CoA hydratase TTHA0218 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.7e-49 Score=344.30 Aligned_cols=210 Identities=20% Similarity=0.235 Sum_probs=188.6
Q ss_pred ccCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChh
Q 024298 39 LQDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 39 ~~~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
.|+.+.++. +++|++|+| ||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|++++.... ...+
T Consensus 7 ~~~~i~~~~~~~gV~~itl-rp~~~Nal~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~--~~~~ 83 (263)
T d1wz8a1 7 RYPGLAFAWPRPGVLEITF-RGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMR--ASHE 83 (263)
T ss_dssp HCTTEEEEEEETTEEEEEE-CCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHH--HCHH
T ss_pred CCCeEEEEEcCCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhc--cccc
Confidence 578899997 678999999 788999999999999999999999999999999999999999999999987642 2344
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL- 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~- 196 (269)
....++....+++..+.++||||||+|||+|+|||++|+++||++|++++++|++||+++|++|++|+++++++++|..
T Consensus 84 ~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~Gl~p~~~~~~~l~~~~G~~~ 163 (263)
T d1wz8a1 84 ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKGTRLLDGHLRLGVAAGDHAVLLWPLLVGMAK 163 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTSCCTTTHHHHTHHHHCHHH
T ss_pred ccccchhhhhHHHHHhhhhhcceeeeccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence 5667777888899999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHH
Q 024298 197 GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNC 251 (269)
Q Consensus 197 a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 251 (269)
+++++++|++++++||+++||||+|+|++++++++.+.+...+..|..+....|.
T Consensus 164 a~~l~l~g~~i~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~al~~~K~ 218 (263)
T d1wz8a1 164 AKYHLLLNEPLTGEEAERLGLVALAVEDEKVYEKALEVAERLAQGPKEALHHTKH 218 (263)
T ss_dssp HHHHHHHTCCEEHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred hhhhcccccccchhHHHhcCCcccccchhhhhHHHHHHHHHhhccHHHHHHHHHH
Confidence 8999999999999999999999999999999999777666665554444444443
|
| >d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Carbapenem biosynthes protein CarB species: Pectobacterium carotovorum [TaxId: 554]
Probab=100.00 E-value=1.4e-48 Score=334.87 Aligned_cols=204 Identities=19% Similarity=0.285 Sum_probs=180.0
Q ss_pred EEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhhHHHH
Q 024298 44 LVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFKNF 122 (269)
Q Consensus 44 ~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (269)
..+.+|+|++||||||++.|++|.+|+.+|.+++++++.|+++++|||+|.| ++||+|.|+.++... ...+....+
T Consensus 3 ~~~~~d~I~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~i~~vVl~~~g~~~F~aG~Dl~~~~~~---~~~~~~~~~ 79 (230)
T d2a7ka1 3 FEENSDEVRVITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQL---SRSEDIEEW 79 (230)
T ss_dssp EEEEETTEEEEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC----CHHHHHHH
T ss_pred EEEecCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCcccccceeccchhhhhhhccccccccc---ccccccccc
Confidence 4466889999999999999999999999999999999999999999999987 799999999998753 234556677
Q ss_pred HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHh
Q 024298 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLA 201 (269)
Q Consensus 123 ~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ 201 (269)
.+.+.+++.++.++|||+||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+ .+|++++|.. +++++
T Consensus 80 ~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~-~~l~~~iG~~~a~~l~ 158 (230)
T d2a7ka1 80 IDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGA-AILGFTHGFSTMQEII 158 (230)
T ss_dssp HHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTCCCHHHH-HHHHHHHCHHHHHHHH
T ss_pred hhhhhhhhhcccchhcceeeecccccccccccchhccchhhccccchhhhccccccccccccc-cccccccccccccccc
Confidence 788889999999999999999999999999999999999999999999999999999998765 5799999995 89999
Q ss_pred ccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHH
Q 024298 202 LTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNC 251 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 251 (269)
++|++++|+||+++||||+|+|++++++++.+.+...+..|..+....|+
T Consensus 159 l~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~ia~~~~~a~~~~K~ 208 (230)
T d2a7ka1 159 YQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASAFINTKR 208 (230)
T ss_dssp HHCCCBCHHHHHHHTCCSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred cccccchHHHHHHhhhcccCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999666655555554444444443
|
| >d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.1e-48 Score=338.09 Aligned_cols=192 Identities=18% Similarity=0.136 Sum_probs=172.3
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccC----
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEG---- 114 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~---- 114 (269)
+++.|.++.+|+|++|+||||+++|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|+|++++.......
T Consensus 3 ~~e~i~~~~~~~v~~Itlnrp~~~Na~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~ 82 (266)
T d1pjha_ 3 QNEKISYRIEGPFFIIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKY 82 (266)
T ss_dssp CBTTEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CC
T ss_pred CCCeEEEEEECCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhccccccccc
Confidence 5788999999999999999999999999999999999999999999999999999999999999999987543211
Q ss_pred ---ChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeC-CceEecCcccccccCCCchHHHHH
Q 024298 115 ---KFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTD-KTVFSNPETQMGFHPDAGASFYLS 190 (269)
Q Consensus 115 ---~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~ 190 (269)
..+....++..+..++..+.++||||||+|||+|+|||++|+++||+|||++ +++|++||+++|++|++|++++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl~p~~g~~~~l~ 162 (266)
T d1pjha_ 83 PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGLITEGGTTVSLP 162 (266)
T ss_dssp SSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTCCCCTTHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhccccccccccccccccccccccccc
Confidence 1223455667778899999999999999999999999999999999999964 688999999999999999999999
Q ss_pred hhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHH
Q 024298 191 HLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 191 r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
+++|.. +++++++|++++++||+++||||+|+++++...+
T Consensus 163 r~~g~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~~~~ 203 (266)
T d1pjha_ 163 LKFGTNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAE 203 (266)
T ss_dssp HHHCHHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHH
T ss_pred cccccchhhhhhccCCcCCHHHHHHCCCEeEeeCchhhhHH
Confidence 999995 8999999999999999999999999998776543
|
| >d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Fatty oxidation complex alpha subunit, N-terminal domain species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=9.4e-47 Score=336.92 Aligned_cols=213 Identities=15% Similarity=0.144 Sum_probs=189.7
Q ss_pred ccCcEEEEE-eCCEEEEEEc-CCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCCh
Q 024298 39 LQDQVLVEG-RAKSRAAILN-RPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 39 ~~~~v~~~~-~~~v~~I~ln-~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~ 116 (269)
.++.+.+++ +++|++|+|| +|++.|++|.+++.+|.++++.++.|+++++|||+|.|++||+|+|+.++....... .
T Consensus 4 ~~~~i~~~~~~~gva~i~ln~~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~-~ 82 (310)
T d1wdka4 4 EGKAITVTALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLP-D 82 (310)
T ss_dssp ECSSEEEEECGGGEEEEEECCTTSSSCBCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSC-H
T ss_pred CCceEEEEEecCCEEEEEECCCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhccccc-c
Confidence 356788887 7889999998 788999999999999999999999999999999999999999999999987653322 2
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL 196 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~ 196 (269)
.........++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|++++|++++|..
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~a~f~~pe~~~Gl~P~~gg~~~L~r~iG~~ 162 (310)
T d1wdka4 83 AELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADSAKIGLPEVKLGIYPGFGGTVRLPRLIGVD 162 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECGGGGGTCCCCSSHHHHHHHHHCHH
T ss_pred hhhhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhccccceecccccccCCCccccchhhhhhhhhhh
Confidence 23334444677899999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 197 -GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 197 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
+++++++|++++++||+++||||+|+|++++++++.+.+......|....+..+..
T Consensus 163 ~a~~lll~g~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~~~~~~~~~~~~~~~~ 219 (310)
T d1wdka4 163 NAVEWIASGKENRAEDALKVSAVDAVVTADKLGAAALDLIKRAISGELDYKAKRQPK 219 (310)
T ss_dssp HHHHHHHHCCCEEHHHHHHTTSSSEEECGGGHHHHHHHHHHHHHTTSSCHHHHHGGG
T ss_pred hhhhhhccccccCHHHHhhccCccEEccHHHHHHHHHHHHHHHHhcccchhhhhhhh
Confidence 89999999999999999999999999999999999998888877776655554443
|
| >d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: 6-oxo camphor hydrolase species: Rhodococcus erythropolis [TaxId: 1833]
Probab=100.00 E-value=7.7e-48 Score=334.07 Aligned_cols=210 Identities=14% Similarity=0.191 Sum_probs=187.4
Q ss_pred cccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChh
Q 024298 38 YLQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 38 ~~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
+.|++|.++++|+|++|+||||++.|++|.+|+.+|.+++++++.|+++++|||+|.|++||+|.|++++. ....+
T Consensus 10 ~~y~~i~~~~~~~v~~itln~p~~~Nal~~~~~~el~~al~~~~~d~~v~~vvl~g~g~~FsaG~Dl~~~~----~~~~~ 85 (249)
T d1szoa_ 10 QKYENIRLERDGGVLLVTVHTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFN----LGTPH 85 (249)
T ss_dssp TSCTTEEEEEETTEEEEEECBTTBSCEECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSC----CSSHH
T ss_pred CCCCeEEEEEECCEEEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcceEeeecccccccccchhhhhh----ccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999864 24456
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEe-cCcccccccCCCchHHHHHhhhhHH
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFS-NPETQMGFHPDAGASFYLSHLPGYL 196 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~-~pe~~~Gl~p~~g~~~~l~r~~g~~ 196 (269)
....+...++.++.++.++||||||++||+|.| |++|+++||+||++++++|. +||+++|++|++|+++++++++|..
T Consensus 86 ~~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~G-G~~l~l~~D~ria~~~a~f~~~pe~~~g~~p~~g~~~~l~r~ig~~ 164 (249)
T d1szoa_ 86 DWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAESATFQDGPHFPSGIVPGDGAHVVWPHVLGSN 164 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETTCEEECTTSGGGTCCCTTTHHHHHHHHHCHH
T ss_pred chhhhhhhhhhhhhhcccCcccceeeecccccc-ccccccccccccccCCcEEEEeeccccccccccccccccccccCcc
Confidence 667777888899999999999999999998865 67899999999999999995 7999999999999999999999995
Q ss_pred -HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHH
Q 024298 197 -GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCF 252 (269)
Q Consensus 197 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (269)
+++++++|++++++||+++||||+|+|++++++++.+.+...+..|..+....|..
T Consensus 165 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~~a~~la~~~~~a~~~~K~~ 221 (249)
T d1szoa_ 165 RGRYFLLTGQELDARTALDYGAVNEVLSEQELLPRAWELARGIAEKPLLARRYARKV 221 (249)
T ss_dssp HHHHHHHTTCEEEHHHHHHHTSCSEEECHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred ceeeecccCCCCCHHHHHHhCCcCcccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 89999999999999999999999999999999996666655555554444444443
|
| >d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Enoyl-CoA hydratase (crotonase) species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.1e-47 Score=330.23 Aligned_cols=206 Identities=25% Similarity=0.285 Sum_probs=182.8
Q ss_pred EEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHH
Q 024298 43 VLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNF 122 (269)
Q Consensus 43 v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~ 122 (269)
|.+++ |+|++||||||++.|++|.+|+.+|.++++.++.|+++++|||||.|++||+|.|+.++.... ..+......+
T Consensus 2 v~ie~-G~va~Itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~-~~~~~~~~~~ 79 (253)
T d1uiya_ 2 VQVEK-GHVAVVFLNDPERRNPLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVT-ELGAEENYRH 79 (253)
T ss_dssp EEEEC-SSEEEEEECCGGGTCCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHT-TSCHHHHHHH
T ss_pred EEEee-CCEEEEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhcc-ccCcccccch
Confidence 45653 789999999999999999999999999999999999999999999999999999999887653 2344555666
Q ss_pred HHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHh
Q 024298 123 FETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLA 201 (269)
Q Consensus 123 ~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ 201 (269)
...++.++..+.++||||||+|||+|+|||++|+++|||||++++++|++||.++|++|. |++++|++++|.. +++++
T Consensus 80 ~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~a~~~~~e~~~g~~~~-~~~~~l~~~~g~~~a~~l~ 158 (253)
T d1uiya_ 80 SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEEARLGYTEVKIGFVAA-LVSVILVRAVGEKAAKDLL 158 (253)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETTCEEECCHHHHTCCCH-HHHHHHHHHSCHHHHHHHH
T ss_pred hhhhhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhhhHHhhhhcccccccc-cchhhhhcccCHHHHHHHh
Confidence 777888999999999999999999999999999999999999999999999999998885 5678899999995 89999
Q ss_pred ccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHH
Q 024298 202 LTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNC 251 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 251 (269)
++|++++++||+++||||+|+|++++++++.+.+......|..+....|.
T Consensus 159 l~g~~~~a~eA~~~Glv~~v~~~~~~~~~a~~~a~~~~~~~~~a~~~~K~ 208 (253)
T d1uiya_ 159 LTGRLVEAREAKALGLVNRIAPPGKALEEAKALAEEVAKNAPTSLRLTKE 208 (253)
T ss_dssp HHCCEEEHHHHHHHTSCSEEECTTCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hcCcCCCHHHHHHhCCCcccccccccchhHHHHHHhhcccchHHHHHHHH
Confidence 99999999999999999999999999999888777776665555555444
|
| >d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Methylmalonyl CoA decarboxylase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.3e-48 Score=338.54 Aligned_cols=206 Identities=17% Similarity=0.202 Sum_probs=179.3
Q ss_pred ccCcEEEEEeCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcC--CCCccccCChhHHHHhhccCCh
Q 024298 39 LQDQVLVEGRAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGA--GRAFCSGGDVIALYQLLNEGKF 116 (269)
Q Consensus 39 ~~~~v~~~~~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~--g~~F~~G~Dl~~~~~~~~~~~~ 116 (269)
.|++|.++++|+|++|+||||++.|++|.+|+.+|.++|++++ ++++++|||+|. |++||+|+|++++.....+.
T Consensus 2 ~~~~i~~~~~~~v~~Itlnrp~~~Nal~~~~~~~l~~al~~~~-~~~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~-- 78 (261)
T d1ef8a_ 2 SYQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN-RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDP-- 78 (261)
T ss_dssp CCSSEEEEEETTEEEEEECCGGGTTCCCHHHHHHHHHHHHHTC-STTCCEEEEECCTTCSEEECCSCSTTC-----CT--
T ss_pred CCCEEEEEEECCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEeccccchhhcccccccccccCCccc--
Confidence 3688999999999999999999999999999999999999997 457999999986 47999999999886532111
Q ss_pred hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH
Q 024298 117 EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL 196 (269)
Q Consensus 117 ~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~ 196 (269)
..+.+.++.++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|..
T Consensus 79 ---~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~a~~~~pe~~~Gl~~~~~~~~~l~r~~g~~ 155 (261)
T d1ef8a_ 79 ---LSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFH 155 (261)
T ss_dssp ---TCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETTCEEECCHHHHTCCCCHHHHHTTSSSSCHH
T ss_pred ---cccccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHhHHHhhhhcccccccccccccccccccCcc
Confidence 12334567788899999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHH
Q 024298 197 -GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYN 250 (269)
Q Consensus 197 -a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 250 (269)
+++++++|+.++++||+++||||+++|++++++++.+.+...+..+..+....|
T Consensus 156 ~a~~~~l~g~~~~a~eA~~~Glv~~vv~~~~~~~~a~~~a~~la~~~~~a~~~~K 210 (261)
T d1ef8a_ 156 IVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIK 210 (261)
T ss_dssp HHHHHHHHCCCEEHHHHHHTTSCSEEECHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred ccccccccCceEcHHHHHHcCCcceeeechhhhhhhHHHHHHHHhcCcHHHHHHH
Confidence 899999999999999999999999999999999977776666655444444444
|
| >d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=100.00 E-value=7.1e-47 Score=327.94 Aligned_cols=206 Identities=16% Similarity=0.153 Sum_probs=182.3
Q ss_pred CcEEEEEe--CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCC-CccccCChhHHHHhhccCChh
Q 024298 41 DQVLVEGR--AKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGR-AFCSGGDVIALYQLLNEGKFE 117 (269)
Q Consensus 41 ~~v~~~~~--~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~-~F~~G~Dl~~~~~~~~~~~~~ 117 (269)
+.+.++.+ ++|++|+||||+ .|++|.+|+.+|.++++.+++|+++++|||+|.|+ +||+|+|++++.. ....
T Consensus 2 ~~ilve~~~~~gIa~itln~p~-~Nal~~~~~~~l~~~l~~~~~d~~v~~vvl~g~g~~~Fs~G~Dl~~~~~----~~~~ 76 (249)
T d1sg4a1 2 QRVLVEPDAGAGVAVMKFKNPP-VNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCG----RSPA 76 (249)
T ss_dssp CSEEEEEETTTTEEEEEECCTT-TTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSS----CCHH
T ss_pred CcEEEEEECCCCEEEEEECCCC-cCCCCHHHHHHHHHHHHHHHhCCCccEEEEEeccceeEecccccccccc----cccc
Confidence 34556654 779999999996 69999999999999999999999999999999985 7999999998743 3456
Q ss_pred hHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceE--ecCcccccccCCCchHHHHHhhhhH
Q 024298 118 DFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVF--SNPETQMGFHPDAGASFYLSHLPGY 195 (269)
Q Consensus 118 ~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f--~~pe~~~Gl~p~~g~~~~l~r~~g~ 195 (269)
....+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++++| ++||+++|++|++|++++|++++|.
T Consensus 77 ~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~a~f~~~~pe~~~Gl~p~~g~~~~l~~~iG~ 156 (249)
T d1sg4a1 77 HYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWLKDTLENTIGH 156 (249)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTTCCBSCCGGGGTCCCCHHHHHHHHHHHCH
T ss_pred cccccchhhHHHHHhhhcCccccchhhcccccccccccccccccceeecccccccccccccccccccccccccccccccc
Confidence 66778888999999999999999999999999999999999999999999876 7899999999999999999999999
Q ss_pred H-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHH
Q 024298 196 L-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNC 251 (269)
Q Consensus 196 ~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 251 (269)
. +++++++|++++++||+++||||+++|++++++++.+.+...+..|..+.+..|.
T Consensus 157 ~~a~~lll~g~~~~a~~A~~~Glv~~v~~~~~l~~~a~~~a~~l~~~~~~a~~~~K~ 213 (249)
T d1sg4a1 157 RAAERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTALSAIAQWMAIPDHARQLTKA 213 (249)
T ss_dssp HHHHHHHHHTCCBCHHHHHHHTSSSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred ccccccccccccccHHHHHhhccccccCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5 7999999999999999999999999999999999777666666555555554443
|
| >d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.3e-46 Score=330.29 Aligned_cols=211 Identities=20% Similarity=0.238 Sum_probs=179.8
Q ss_pred cCcEEEEE-eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCCh--
Q 024298 40 QDQVLVEG-RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKF-- 116 (269)
Q Consensus 40 ~~~v~~~~-~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~-- 116 (269)
|+++.++. +++|++||||||+++|++|.+|+.+|.++|+.+++|+++++|||||.|++||+|+|+.++.....+...
T Consensus 2 y~~l~~~~~~~~I~~itlnrP~~~Nals~~m~~el~~~l~~~~~d~~v~~vvltg~~~~F~aG~dl~~~~~~~~~~~~~~ 81 (275)
T d1dcia_ 2 YESIQVTSAQKHVLHVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDD 81 (275)
T ss_dssp CSSEEEEEEETTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSS
T ss_pred CceEEEEEccCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccCccHHHhhhccccccccc
Confidence 67888865 889999999999999999999999999999999999999999999999999999999998765433211
Q ss_pred -----hhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHh
Q 024298 117 -----EDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSH 191 (269)
Q Consensus 117 -----~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r 191 (269)
.....+...+..++..+.++||||||+|||+|+|||++|+++|||||++++++|++||+++|++|++|+++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~a~f~~pe~~~Gl~p~~~~~~~~~~ 161 (275)
T d1dcia_ 82 VARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFFQVKEVDVGLAADVGTLQRLPK 161 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETTCEEECCGGGGTSCCCSSHHHHGGG
T ss_pred ccchhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccCccccchhccccccccccccccccc
Confidence 123345556778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhH-HH-HHHhccCCCCCHHHHHhcCccceeccCCh-HHHHHHHhhhhhccc-cccHHHHHH
Q 024298 192 LPGY-LG-EYLALTGEKLNGVEMIACGLATHYTLNGV-RYTALYFTSLCVSSL-CYSSYAAYN 250 (269)
Q Consensus 192 ~~g~-~a-~~l~ltG~~i~a~eA~~~GLv~~vv~~~~-l~~~~~~~~~~~~~~-~~~~~~~~~ 250 (269)
++|. .+ .+++++|+.++++||+++||||+|+|+++ +++++.+.+...+.. |.+....++
T Consensus 162 ~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~~~a~~i~~~~p~a~~~~K~ 224 (275)
T d1dcia_ 162 VIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKSPVAVQGSKI 224 (275)
T ss_dssp TCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ccccccccccccccccccchhhhccCCCceeeeehhhhhhhcccccccccccccHHHHHHHHH
Confidence 9995 44 78999999999999999999999999866 456655555544443 443333333
|
| >d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: AUH protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-46 Score=329.16 Aligned_cols=182 Identities=19% Similarity=0.303 Sum_probs=168.5
Q ss_pred eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-CCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-RAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
+++|++|+||||++.|++|.+|+.+|.++++.++.|+++++|||||.| ++||+|.|+.++.. ........+.+.+
T Consensus 13 ~~gI~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~----~~~~~~~~~~~~~ 88 (266)
T d1hzda_ 13 NRGIVVLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAK----MSSSEVGPFVSKI 88 (266)
T ss_dssp GTTEEEEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTT----SCHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHhCCCcceEEEecccccccccccccccccc----ccchhhhhhhhHH
Confidence 467999999999999999999999999999999999999999999998 58999999998864 2344556777888
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH-HHHHhccCC
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL-GEYLALTGE 205 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~-a~~l~ltG~ 205 (269)
..++..+.++||||||+|||+|+|||++|+++||+||++++++|++||+++|++|++|+++++++++|.. +++++++|+
T Consensus 89 ~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~a~f~~pe~~~G~~p~~g~~~~l~~~ig~~~a~~l~ltg~ 168 (266)
T d1hzda_ 89 RAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSAR 168 (266)
T ss_dssp HHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETTCEEECCGGGGTCCCCSSHHHHHHHHHCHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCcccccccccccccccceeccccceeeecCCcEEeecccceeecCCccceeeehhhhHHHHHHhhhccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999995 899999999
Q ss_pred CCCHHHHHhcCccceeccCChHHHHHHH
Q 024298 206 KLNGVEMIACGLATHYTLNGVRYTALYF 233 (269)
Q Consensus 206 ~i~a~eA~~~GLv~~vv~~~~l~~~~~~ 233 (269)
+++|+||+++||||+|||++++.+++.+
T Consensus 169 ~~~a~eA~~~Glv~~vv~~~~l~~~~~~ 196 (266)
T d1hzda_ 169 VLDGKEAKAVGLISHVLEQNQEGDAAYR 196 (266)
T ss_dssp EEEHHHHHHHTSCSEEECCCTTSCHHHH
T ss_pred ccCHHHhhcccccccccChhhhhhHHHH
Confidence 9999999999999999999987665444
|
| >d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Crotonase-like domain: Naphthoate synthase MenB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=2.7e-45 Score=325.59 Aligned_cols=214 Identities=17% Similarity=0.206 Sum_probs=172.4
Q ss_pred cCcEEEEE--eCCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCC-------CCccccCChhHHHHh
Q 024298 40 QDQVLVEG--RAKSRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAG-------RAFCSGGDVIALYQL 110 (269)
Q Consensus 40 ~~~v~~~~--~~~v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g-------~~F~~G~Dl~~~~~~ 110 (269)
++.+.+++ +++|++||||||+++|++|.+|+.+|.++++.++.|+++++|||||.| +.||+|.|+......
T Consensus 17 ~~~i~~~~~~~~gi~~ItlnRP~~~NAl~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~ 96 (297)
T d1q52a_ 17 LTDITYHRHVDDATVRVAFNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRS 96 (297)
T ss_dssp CSSEEEEEESSSSEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC--------
T ss_pred CcceEEEEEccCCEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhccc
Confidence 44577765 589999999999999999999999999999999999999999999984 567777777655432
Q ss_pred hcc-------CChhhHHHHHHHHHHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC-ceEecCcccccccCC
Q 024298 111 LNE-------GKFEDFKNFFETLYQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFSNPETQMGFHPD 182 (269)
Q Consensus 111 ~~~-------~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~ 182 (269)
... ...+........+..++..|..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|++|+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl~p~ 176 (297)
T d1q52a_ 97 GYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDG 176 (297)
T ss_dssp ---------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTCCCC
T ss_pred ccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeeccccccc
Confidence 111 111122333345677888999999999999999999999999999999999875 579999999999999
Q ss_pred CchHHHHHhhhhHH-HHHHhccCCCCCHHHHHhcCccceeccCChHHHHHHHhhhhhccccccHHHHHHHHh
Q 024298 183 AGASFYLSHLPGYL-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTALYFTSLCVSSLCYSSYAAYNCFL 253 (269)
Q Consensus 183 ~g~~~~l~r~~g~~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (269)
++++++|++++|.. +++++++|++++++||+++||||+|+|++++++++.+.+...+..|..+..+.|...
T Consensus 177 ~~~~~~L~r~iG~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~el~~~~~~~a~~l~~~~~~a~~~~K~~~ 248 (297)
T d1q52a_ 177 GYGSAYLARQVGQKFAREIFFLGRTYTAEQMHQMGAVNAVAEHAELETVGLQWAAEINAKSPQAQRMLKFAF 248 (297)
T ss_dssp STTTHHHHHHHCHHHHHHHHHHCCEECHHHHHHHTSCSEEECGGGHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cccccccccccCccceeeccccccccchHhhhhhccccccCchHHhhHHHHHHhhhhccCCHHHHHHHHHHH
Confidence 99999999999995 899999999999999999999999999999999987777777666666666665444
|
| >d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.36 E-value=1.4e-06 Score=69.53 Aligned_cols=134 Identities=14% Similarity=0.080 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEE
Q 024298 65 LNTSMVGRLKRLYESWEEN---PDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (269)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d---~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~I 141 (269)
+|.++..++...|..++.+ +.+. +.|.+ .|+|+..-. .++..+..++.|+.
T Consensus 22 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS------~GG~v~~gl-------------------~i~d~i~~~~~~v~ 75 (179)
T d2cbya1 22 VNDEIANRLCAQILLLAAEDASKDIS-LYINS------PGGSISAGM-------------------AIYDTMVLAPCDIA 75 (179)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEE------CCBCHHHHH-------------------HHHHHHHHCSSCEE
T ss_pred ECHHHHHHHHHHHHHHhccCCCCeEE-EEeeC------CCCCHHHHH-------------------HHHHHHHhhcccee
Confidence 7888999998877655432 3333 44454 555554321 24445667899999
Q ss_pred EEEchhcchhhHHHHHhCC--EEEEeCCceEecCcccccccCCCchHH---------------HHHhhhhHH---HHHHh
Q 024298 142 AILDGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGASF---------------YLSHLPGYL---GEYLA 201 (269)
Q Consensus 142 aav~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~---------------~l~r~~g~~---a~~l~ 201 (269)
..+.|.|.+.|.-+.+++| .|++.++++|-+-+...|..-...-.. .+.+..|.. -.+.+
T Consensus 76 t~~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~~ 155 (179)
T d2cbya1 76 TYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADS 155 (179)
T ss_dssp EEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred eehhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhh
Confidence 9999999999999999999 799999999999776544421110000 111122331 13445
Q ss_pred ccCCCCCHHHHHhcCccceeccC
Q 024298 202 LTGEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 202 ltG~~i~a~eA~~~GLv~~vv~~ 224 (269)
-.-.-++|+||+++||||+|+.+
T Consensus 156 ~~d~~l~a~EA~~~GliDeIi~~ 178 (179)
T d2cbya1 156 DRDRWFTAAEALEYGFVDHIITR 178 (179)
T ss_dssp HTTCEEEHHHHHHHTSCSEECSC
T ss_pred cCCceecHHHHHHcCCCcEEecC
Confidence 56788999999999999999875
|
| >d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Escherichia coli [TaxId: 562]
Probab=98.31 E-value=1e-06 Score=70.49 Aligned_cols=131 Identities=16% Similarity=0.098 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHHHhcCC---CceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEE
Q 024298 65 LNTSMVGRLKRLYESWEENP---DIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (269)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d~---~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~I 141 (269)
+|.++..++...+..++.++ .+. +.|.+ .|+|+..- ..++..|..++.|+.
T Consensus 25 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS------~GG~v~~g-------------------~~i~d~i~~~~~~v~ 78 (183)
T d1yg6a1 25 VEDHMANLIVAQMLFLEAENPEKDIY-LYINS------PGGVITAG-------------------MSIYDTMQFIKPDVS 78 (183)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEE------CCBCHHHH-------------------HHHHHHHHHSSSCEE
T ss_pred ECHHHHHHHHHHHHHhhhhccCCceE-EEEeC------CCccHHHH-------------------HHHHHHHHhCCCCEE
Confidence 78888999888888776432 333 44454 45555432 224456677899999
Q ss_pred EEEchhcchhhHHHHHhCC--EEEEeCCceEecCcccccccCCCchHHHHH------------------hhhhHH---HH
Q 024298 142 AILDGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGASFYLS------------------HLPGYL---GE 198 (269)
Q Consensus 142 aav~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------r~~g~~---a~ 198 (269)
..+.|.|.+.|.-+.+++| .|++.++++|-+-+...|.. |...-+. +..|.. -.
T Consensus 79 tv~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~---G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~i~ 155 (183)
T d1yg6a1 79 TICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ---GQATDIEIHAREILKVKGRMNELMALHTGQSLEQIE 155 (183)
T ss_dssp EEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEE---EEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred EEEEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 9999999999999999998 79999999998877765542 2222111 112221 13
Q ss_pred HHhccCCCCCHHHHHhcCccceeccC
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~ 224 (269)
+++-.-.-++|+||+++||||+|+..
T Consensus 156 ~~~~~d~~lta~EAl~~GliD~Ii~~ 181 (183)
T d1yg6a1 156 RDTERDRFLSAPEAVEYGLVDSILTH 181 (183)
T ss_dssp HHTSSCEEEEHHHHHHHTSSSEECCC
T ss_pred HHhccCccccHHHHHHcCCCcEEecc
Confidence 33334455799999999999999975
|
| >d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Plasmodium falciparum [TaxId: 5833]
Probab=98.21 E-value=1.4e-05 Score=64.13 Aligned_cols=131 Identities=15% Similarity=0.087 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHHHhcC--CCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEE
Q 024298 65 LNTSMVGRLKRLYESWEEN--PDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (269)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d--~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Ia 142 (269)
+|.++..++...|..++.. +.+. +.|. |.|+|+..- ..++..+..++.|+..
T Consensus 27 Id~~~~~~~i~~l~~l~~~~~~~I~-l~IN------S~GG~v~~g-------------------~ai~d~i~~~~~~v~t 80 (190)
T d2f6ia1 27 INKKTADELISQLLYLDNINHNDIK-IYIN------SPGGSINEG-------------------LAILDIFNYIKSDIQT 80 (190)
T ss_dssp BCHHHHHHHHHHHHHHHHHCCSCEE-EEEE------ECCBCHHHH-------------------HHHHHHHHHSSSCEEE
T ss_pred eCHHHHHHHHHHHHHHhccCCCCeE-EEEe------CchhhhhHH-------------------HHHHHHHHhhCCceEE
Confidence 7888999998888877643 3343 4444 456666432 1244455678899999
Q ss_pred EEchhcchhhHHHHHhCC--EEEEeCCceEecCcccccccCCCchHH------------------HHHhhhhHHH---HH
Q 024298 143 ILDGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGASF------------------YLSHLPGYLG---EY 199 (269)
Q Consensus 143 av~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~------------------~l~r~~g~~a---~~ 199 (269)
.+.|.|.+.|..+++++| .|++.++++|-+.....|.. |... .+.+..|... .+
T Consensus 81 v~~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~---G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~~ 157 (190)
T d2f6ia1 81 ISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAF---GHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEK 157 (190)
T ss_dssp EEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC-----------CHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred EEeccccchhHHHHHhCCCCccccCCCcEEEEcccccccC---CcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999999998 59999999999988876652 2111 1112223211 22
Q ss_pred HhccCCCCCHHHHHhcCccceeccC
Q 024298 200 LALTGEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 200 l~ltG~~i~a~eA~~~GLv~~vv~~ 224 (269)
.+-.-.-++|+||+++||||+|++.
T Consensus 158 ~~~~d~~l~a~EAl~~GliD~Ii~~ 182 (190)
T d2f6ia1 158 DSDRDYYMNALEAKQYGIIDEVIET 182 (190)
T ss_dssp HHHTTCEECHHHHHHHTSCSEECCC
T ss_pred hccCCeeecHHHHHHcCCCcEEccc
Confidence 3334466899999999999999975
|
| >d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.20 E-value=4.2e-06 Score=67.37 Aligned_cols=135 Identities=15% Similarity=0.095 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHHHHhcC-C--CceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcE
Q 024298 64 ALNTSMVGRLKRLYESWEEN-P--DIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPH 140 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d-~--~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~ 140 (269)
.+|.++...+...|..++.+ + .+. +.|.+ .|+|+..- ..++..+..++.|+
T Consensus 32 ~I~~~~~~~~~~~l~~l~~~~~~~~I~-l~InS------~GG~v~~g-------------------lai~d~i~~~~~~v 85 (192)
T d1y7oa1 32 PVEDNMANSVIAQLLFLDAQDSTKDIY-LYVNT------PGGSVSAG-------------------LAIVDTMNFIKADV 85 (192)
T ss_dssp CBCHHHHHHHHHHHHHHHHHCTTSCEE-EEEEE------CCBCHHHH-------------------HHHHHHHHHSSSCE
T ss_pred EEchHHHHHHHHHHHHhhhhcccCcee-eeecC------CCCCHHHH-------------------HHHHHHHHhcCcce
Confidence 37888888888888766532 2 343 44554 44554321 22445667789999
Q ss_pred EEEEchhcchhhHHHHHh--CCEEEEeCCceEecCcccccccCCCchH------HHH-----------HhhhhHH---HH
Q 024298 141 VAILDGITMGCGAGISLQ--GMYRVVTDKTVFSNPETQMGFHPDAGAS------FYL-----------SHLPGYL---GE 198 (269)
Q Consensus 141 Iaav~G~a~GgG~~Lal~--cD~~ia~~~a~f~~pe~~~Gl~p~~g~~------~~l-----------~r~~g~~---a~ 198 (269)
...+.|.|.+.|.-++++ +|.|++.++++|-+-+...|..-..... ..+ ....|.. -.
T Consensus 86 ~t~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i~ 165 (192)
T d1y7oa1 86 QTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKVH 165 (192)
T ss_dssp EEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred EEEeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999988776 5799999999999988876653211111 001 1112321 14
Q ss_pred HHhccCCCCCHHHHHhcCccceeccC
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~ 224 (269)
+.+-.-.-++|+||+++||||+|+..
T Consensus 166 ~~~~rd~~lsa~EAleyGliD~Ii~~ 191 (192)
T d1y7oa1 166 ADAERDNWMSAQETLEYGFIDEIMAN 191 (192)
T ss_dssp HHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred HhhcCCceecHHHHHHcCCCcEEecC
Confidence 44455678999999999999999865
|
| >d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=98.10 E-value=0.0002 Score=59.67 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=91.7
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (269)
|.++-.|-.-+.-+++....+.+..+.+.+.+.. +-+|.+.- |.|..+.+-. .....+.+.+..+
T Consensus 91 v~v~a~Dftv~GGS~g~~~~~K~~~a~e~A~~~~-lPlV~l~~-----sgG~r~~eg~--------~~l~~~~~~~~~~- 155 (253)
T d1on3a1 91 VHAASQDFTVMGGSAGETQSTKVVETMEQALLTG-TPFLFFYD-----SGGARIQEGI--------DSLSGYGKMFFAN- 155 (253)
T ss_dssp EEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTH--------HHHHHHHHHHHHH-
T ss_pred chhhhchhhhhcccceecccchhhhhHHHHhhcC-CCeEEEEe-----cCCCcccccc--------eeccccceehHHH-
Confidence 3444444444678899999999999999987764 34555443 4555554311 1112222333333
Q ss_pred HHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCHH
Q 024298 131 YLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNGV 210 (269)
Q Consensus 131 ~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a~ 210 (269)
..+.. .+|+|+++.|+|+||+.....+||++|+.+++.+++.-. ..+.. .+|+.++.+
T Consensus 156 ~~ls~-~vP~i~vv~Gp~~GG~a~~~~~~d~vi~~~~a~i~~aGP-----------~vVe~----------~~ge~~~~e 213 (253)
T d1on3a1 156 VKLSG-VVPQIAIIAGPCAGGASYSPALTDFIIMTKKAHMFITGP-----------QVIKS----------VTGEDVTAD 213 (253)
T ss_dssp HHHTT-TSCEEEEEEEEEESGGGHHHHHSSEEEEETTCEEESSCH-----------HHHHH----------HHCCCCCHH
T ss_pred HHHhc-cceEEEEEecCcccceeeccchhhheeccccceEEecCc-----------chhhh----------hhCCcCChH
Confidence 23333 499999999999999999999999999999877766421 11111 246777765
Q ss_pred HH-------HhcCccceeccCChHH
Q 024298 211 EM-------IACGLATHYTLNGVRY 228 (269)
Q Consensus 211 eA-------~~~GLv~~vv~~~~l~ 228 (269)
|. ..-|.+|.++++++..
T Consensus 214 elGga~~h~~~sG~iD~v~~~e~~a 238 (253)
T d1on3a1 214 ELGGAEAHMAISGNIHFVAEDDDAA 238 (253)
T ss_dssp HHHSHHHHHHTTCCCSEEESSHHHH
T ss_pred hccCHHHhhhccccceEEECCHHHH
Confidence 43 3579999999987653
|
| >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD species: Escherichia coli [TaxId: 562]
Probab=98.04 E-value=3.3e-05 Score=64.93 Aligned_cols=149 Identities=12% Similarity=0.028 Sum_probs=91.1
Q ss_pred EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHH
Q 024298 51 SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFV 130 (269)
Q Consensus 51 v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~ 130 (269)
|.++-.|-.-..-+++....+.+..+.+.+.+.. +-.|.++. |.|..+.+-.. . ...........
T Consensus 98 v~v~a~Dftv~gGS~g~~~~~Ki~~a~e~A~~~~-lPlI~~~~-----sgG~r~~e~~~--------s-l~~~~~~~~~~ 162 (263)
T d2f9yb1 98 VVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDN-CPLICFSA-----SGGARMQEALM--------S-LMQMAKTSAAL 162 (263)
T ss_dssp CBEEEECTTSTTTCBCTHHHHHHHHHHHHHHHHT-CCEEEEEE-----ESSBCGGGTHH--------H-HHHHHHHHHHH
T ss_pred EEEEeeeehhhccccccchhhHHhHHHHHHHHcC-CCeEEEec-----CCCcccccccc--------h-hhcchhHHHHH
Confidence 3444444444678899999999999999887654 44566554 45555543211 1 11122223333
Q ss_pred HHHccCCCcEEEEEchhcchhhHH-HHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCCCH
Q 024298 131 YLQGTFVKPHVAILDGITMGCGAG-ISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKLNG 209 (269)
Q Consensus 131 ~~i~~~~kp~Iaav~G~a~GgG~~-Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i~a 209 (269)
..+....+|+|+++.|+|.||+.. +++++|++++.+.+.+++... ..+....| .+ +.-+--++
T Consensus 163 ~~~~~~~vP~I~v~~g~~~GG~aa~~~~~~d~i~~~~~s~i~~aGP-----------~vve~~~g---e~--~~e~~g~a 226 (263)
T d2f9yb1 163 AKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGP-----------RVIEQTVR---EK--LPPGFQRS 226 (263)
T ss_dssp HHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTTCBEESSCH-----------HHHHHHHT---SC--CCTTTTBH
T ss_pred HHHHhCCCceEEEecCCcchHHHhhhhhcCceEeeecceeeeccCH-----------HHHhhhcC---Cc--CChhhccH
Confidence 445567799999999999999875 777778888888877766421 11111111 11 11122244
Q ss_pred HHHHhcCccceeccCChHHHH
Q 024298 210 VEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 210 ~eA~~~GLv~~vv~~~~l~~~ 230 (269)
+-..+.|.||.++++++.-++
T Consensus 227 ~~~~~~G~iD~vv~~ee~~~~ 247 (263)
T d2f9yb1 227 EFLIEKGAIDMIVRRPEMRLK 247 (263)
T ss_dssp HHHGGGTCCSEECCHHHHHHH
T ss_pred HHHHhCCCCCEEECCHHHHHH
Confidence 445678999999987776554
|
| >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.03 E-value=0.00031 Score=58.62 Aligned_cols=141 Identities=10% Similarity=0.068 Sum_probs=89.7
Q ss_pred eCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAK-SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~-v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
++. |.++-.|-.-+.-+++....+.+..+.+.+.++. +-.|.+.- |.|..+.+-.. ....+.. +
T Consensus 87 ~G~~v~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~~-lP~I~l~d-----sgGar~~eg~~--------~~~~~~~-~ 151 (258)
T d2a7sa1 87 DGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTG-RPLIGIND-----GAGARIQEGVV--------SLGLYSR-I 151 (258)
T ss_dssp SSSEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEC-----CCSBCGGGCTH--------HHHHHHH-H
T ss_pred ccceEEEecccceEeCCccchhhhhHHHHHHHHHHhcC-CceEEEec-----cCCcccccccc--------cccchhh-H
Confidence 444 4444444444778899999999999999988764 45555554 45555543110 0111111 2
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeC-CceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCC
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTD-KTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGE 205 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~ 205 (269)
..... ...-.+|+|+++.|+|.||+......||++|+.+ .+++.+. +...+.. .+|+
T Consensus 152 ~~~~~-~~~~~vP~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i~~a-----------GP~vV~~----------~~ge 209 (258)
T d2a7sa1 152 FRNNI-LASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFIT-----------GPDVIKT----------VTGE 209 (258)
T ss_dssp HHHHH-HHTTTSCEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBCBSS-----------CHHHHHH----------HHCC
T ss_pred HHHHH-HHcCCCCEEEEEecCcccHHHHHHHhccceEeecCceEEEcc-----------ChhHHHH----------hcCC
Confidence 22222 2345699999999999999999999999988765 5555443 1111111 3678
Q ss_pred CCCHHHH-------HhcCccceeccCC
Q 024298 206 KLNGVEM-------IACGLATHYTLNG 225 (269)
Q Consensus 206 ~i~a~eA-------~~~GLv~~vv~~~ 225 (269)
.++.+|. .+.|.+|.+++++
T Consensus 210 ~~~~eeLGga~~h~~~sG~~D~v~~de 236 (258)
T d2a7sa1 210 EVTMEELGGAHTHMAKSGTAHYAASGE 236 (258)
T ss_dssp CCCHHHHHBHHHHHHTSCCCSEEESSH
T ss_pred ccChhhccCHhHhhhhccccceEeCCH
Confidence 8887764 4579999999865
|
| >d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Clp protease, ClpP subunit domain: Clp protease, ClpP subunit species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=97.99 E-value=1.7e-05 Score=63.77 Aligned_cols=131 Identities=12% Similarity=0.079 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHHHhcC---CCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEE
Q 024298 65 LNTSMVGRLKRLYESWEEN---PDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (269)
Q Consensus 65 l~~~~~~eL~~~l~~~~~d---~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~I 141 (269)
+|.++...+...+..++.. ..+. +.|.+. |+|+.. ...++..+..++.||.
T Consensus 35 I~~~~~~~~i~~l~~l~~~~~~~~I~-l~InS~------GG~v~~-------------------g~~i~d~i~~~~~~V~ 88 (193)
T d1tg6a1 35 IDDSVASLVIAQLLFLQSESNKKPIH-MYINSP------GGVVTA-------------------GLAIYDTMQYILNPIC 88 (193)
T ss_dssp BCHHHHHHHHHHHHHHHHHCSSSCEE-EEEEEC------CBCHHH-------------------HHHHHHHHHHSCSCEE
T ss_pred EchHHHHHHHHHHHHhcccCCCcEEE-EEeecC------cccHHH-------------------HHHHHHHHHhhcCceE
Confidence 7788888888777666532 3344 444554 444422 1234556667889999
Q ss_pred EEEchhcchhhHHHHHhCC--EEEEeCCceEecCcccccccCCCchHHHHH------------------hhhhHH---HH
Q 024298 142 AILDGITMGCGAGISLQGM--YRVVTDKTVFSNPETQMGFHPDAGASFYLS------------------HLPGYL---GE 198 (269)
Q Consensus 142 aav~G~a~GgG~~Lal~cD--~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~------------------r~~g~~---a~ 198 (269)
..+.|.|.+.|..+.+++| .|++.++++|-+-+...|.. |-..-+. ...|.. -.
T Consensus 89 tv~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~---G~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i~ 165 (193)
T d1tg6a1 89 TWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGAR---GQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIE 165 (193)
T ss_dssp EEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCC---SSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred EEEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCC---cCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 9999999999999999999 59999999999988765542 2222111 112221 13
Q ss_pred HHhccCCCCCHHHHHhcCccceeccC
Q 024298 199 YLALTGEKLNGVEMIACGLATHYTLN 224 (269)
Q Consensus 199 ~l~ltG~~i~a~eA~~~GLv~~vv~~ 224 (269)
+.+-.-.-++|+||+++||||+|+..
T Consensus 166 ~~~~rD~~lta~EAl~yGliD~Ii~~ 191 (193)
T d1tg6a1 166 SAMERDRYMSPMEAQEFGILDKVLVH 191 (193)
T ss_dssp HHHSSCEEECHHHHHHHTSCSEECSS
T ss_pred HHhccCccCCHHHHHHcCCCCEEccC
Confidence 33344455999999999999999864
|
| >d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=97.98 E-value=0.00019 Score=60.01 Aligned_cols=141 Identities=13% Similarity=0.094 Sum_probs=91.2
Q ss_pred eCC-EEEEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAK-SRAAILNRPSNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~-v~~I~ln~p~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
++. |.++-.|..-+.-+++....+.+..+.+.+.+.. +-.|.+.- |.|..+.+-... .....+ +
T Consensus 86 ~G~~v~v~a~Dftv~gGS~g~~~~~K~~r~~e~A~~~~-lPlI~l~d-----sgGarm~e~~~~--------~~~~~~-~ 150 (258)
T d1xnya1 86 DGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTG-CPVVGIND-----SGGARIQEGVAS--------LGAYGE-I 150 (258)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEC-----CCSBCGGGTHHH--------HHHHHH-H
T ss_pred CCEEEEEEechhhhhcCccchhhHHHHHHHHHHHHHcC-CceEEEec-----CCCcccCccccc--------ccchhH-H
Confidence 443 4444444445778899999999999999888754 55666665 455555432111 111112 2
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeC-CceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCC
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTD-KTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGE 205 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~-~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~ 205 (269)
......+ .-.+|+|+++.|+|.||+......||++|..+ .+++++.-. -.+. ..+|+
T Consensus 151 ~~~~~~~-s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~~aGP-----------~vv~----------~~~ge 208 (258)
T d1xnya1 151 FRRNTHA-SGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGP-----------DVIK----------TVTGE 208 (258)
T ss_dssp HHHHHHT-TTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEESSCH-----------HHHH----------HHHCC
T ss_pred HHHHHHH-cCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEEecCH-----------HHHH----------HHhcC
Confidence 2222222 34699999999999999999999999988776 556655311 1111 13678
Q ss_pred CCCHHHH-------HhcCccceeccCC
Q 024298 206 KLNGVEM-------IACGLATHYTLNG 225 (269)
Q Consensus 206 ~i~a~eA-------~~~GLv~~vv~~~ 225 (269)
.++.+|+ ..-|++|.+++++
T Consensus 209 ~i~~eelgga~~h~~~sG~~d~v~~de 235 (258)
T d1xnya1 209 DVGFEELGGARTHNSTSGVAHHMAGDE 235 (258)
T ss_dssp CCCHHHHHBHHHHHHTSSCCSEEESSH
T ss_pred ccChHHhccHHHHHhcCCeeEEEeCCH
Confidence 8888875 4569999999765
|
| >d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=97.91 E-value=0.0003 Score=58.51 Aligned_cols=142 Identities=13% Similarity=0.109 Sum_probs=88.9
Q ss_pred eCCEEEEEEcCC-CCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAKSRAAILNRP-SNLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~v~~I~ln~p-~~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
++.-..|.-+++ -..-+++....+.+..+.+.+.+.. +-.|.+.. |.|..+.+-... ....-+.+
T Consensus 84 ~G~~v~v~a~D~t~~gGs~g~~~~~K~~r~~e~A~~~~-~P~I~~~d-----sgG~r~~e~~~~--------l~~~~~~~ 149 (251)
T d1vrga1 84 NGRKVAVFSQDFTVMGGSLGEMHAKKIVKLLDLALKMG-IPVIGIND-----SGGARIQEGVDA--------LAGYGEIF 149 (251)
T ss_dssp TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHHT-CCEEEEEE-----ECSBCGGGTHHH--------HHHHHHHH
T ss_pred ccEEEEEeeehhhhhhcccchHHHHHHHHHHHHHHHcC-CCEEEEEc-----CCCccccccccc--------cccchHHH
Confidence 343333344444 3667888888899999888887654 44555554 456655432111 11111222
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCC-ceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCC
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDK-TVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGE 205 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~ 205 (269)
. .... ..-..|+|+++.|+|.||+......||++|+.++ +++.+. +.. + .+. .+|+
T Consensus 150 ~-~~~~-~s~~iP~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i~~a-----------Gp~----v-----v~~-~~ge 206 (251)
T d1vrga1 150 L-RNTL-ASGVVPQITVIAGPCAGGAVYSPALTDFIVMVDQTARMFIT-----------GPN----V-----IKA-VTGE 206 (251)
T ss_dssp H-HHHH-HTTTSCEEEEEEEEEBGGGGHHHHHSSEEEEETTTCBCBSS-----------CHH----H-----HHH-HHCC
T ss_pred H-HHHH-HCCCCCEEEEEccCccccceehhhhCceEEEEccceeEEec-----------Cch----h-----hhh-hcCC
Confidence 2 2222 2457999999999999999999999999998764 443322 111 1 111 4678
Q ss_pred CCCHHHH-------HhcCccceeccCCh
Q 024298 206 KLNGVEM-------IACGLATHYTLNGV 226 (269)
Q Consensus 206 ~i~a~eA-------~~~GLv~~vv~~~~ 226 (269)
.++.+|. .+-|.+|.++++++
T Consensus 207 ~~~~eelGga~~h~~~sG~~D~v~~de~ 234 (251)
T d1vrga1 207 EISQEDLGGAMVHNQKSGNAHFLADNDE 234 (251)
T ss_dssp CCCHHHHHBHHHHHHTSCCCSEEESSHH
T ss_pred cCChHHccchhhhhhccccceEEECCHH
Confidence 8998875 45799999998763
|
| >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=97.57 E-value=0.0011 Score=56.02 Aligned_cols=166 Identities=11% Similarity=0.056 Sum_probs=94.6
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAKSRAAILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~v~~I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
+|.-..|.-|++. +.-+++....+.+.++++.+.+.. +-+|.|.- |.|+.+.+-..... ......+ .+
T Consensus 102 ~G~~v~v~a~D~t~~gGs~~~~~~~K~~r~~~lA~~~~-lP~I~l~d-----s~Ga~~~~~~e~~~--~~~~~g~---~~ 170 (287)
T d1pixa2 102 NGKWCVVVASDNKKLAGAWVPGQAECLLRASDTAKTLH-VPLVYVLN-----CSGVKFDEQEKVYP--NRRGGGT---PF 170 (287)
T ss_dssp TTEEEEEEEECTTTTTTEECTTHHHHHHHHHHHHHHHT-CCEEEEEC-----CCEECGGGHHHHSS--STTSTTH---HH
T ss_pred ccceEEEEEeccccccccchhhHHHHHHHHHHhhhhcC-CCEEEEec-----CCcccCCcchhhcc--chhhHHH---HH
Confidence 3333334444444 556788888888888888887653 45555554 45555543211110 0011111 12
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCccc--ccccCCCchHHHHHhhhhHHHHHHhccC
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQ--MGFHPDAGASFYLSHLPGYLGEYLALTG 204 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~--~Gl~p~~g~~~~l~r~~g~~a~~l~ltG 204 (269)
.. +..+....+|+|++|.|.|.|||...+++||++++.+++++.+.-.. -+..+..+........+....-+ -.+-
T Consensus 171 ~~-~a~ls~~~VP~Isvv~G~~~gGgAy~~~~~~~i~~~~~a~i~~~Gp~vv~~~~~~~~~~~~~~~ei~~~~ge-~~~~ 248 (287)
T d1pixa2 171 FR-NAELNQLGIPVIVGIYGTNPAGGGYHSISPTVIIAHEKANMAVGGAGIMGGMNPKGHVDLEYANEIADMVDR-TGKT 248 (287)
T ss_dssp HH-HHHHHHTTCCEEEEECSEEETHHHHHHHSSSEEEEETTCEEESCCCTTCCSCCSSSSCCHHHHHHHHHHHHT-TCCC
T ss_pred HH-HHHHhhcCCCeEEEecCCccccceeccccceeEEecCCeEEEEECHHHhcccchhhhhhhhhHHHHHhhhcc-cccc
Confidence 21 22455678999999999999999888888888888898888774332 23333332222222222111001 1234
Q ss_pred CCCCHHHHH--hcCccceeccCCh
Q 024298 205 EKLNGVEMI--ACGLATHYTLNGV 226 (269)
Q Consensus 205 ~~i~a~eA~--~~GLv~~vv~~~~ 226 (269)
+.+.+.+.+ .-|.+|.++++++
T Consensus 249 eeLGGa~~H~~~sG~~d~v~~~e~ 272 (287)
T d1pixa2 249 EPPGAVDIHYTETGFMREVYASEE 272 (287)
T ss_dssp CCSSBHHHHTTTSCCSCEEESSHH
T ss_pred cccccHHHhhhhcccceeecCCHH
Confidence 555555544 4699999998754
|
| >d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA species: Escherichia coli [TaxId: 562]
Probab=97.39 E-value=7.7e-05 Score=64.10 Aligned_cols=137 Identities=12% Similarity=-0.013 Sum_probs=94.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEE
Q 024298 63 NALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVA 142 (269)
Q Consensus 63 Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Ia 142 (269)
-.++++-...-.+.++.++.-. +-+|-+--. .|+.... ..+.....+.+...+..+..+.+|+|+
T Consensus 130 G~~~p~~~rKa~r~~~~a~~~~-~Pii~~vDt-----pG~~~g~---------~~E~~g~~~~~a~~~~~~~~~~vP~i~ 194 (316)
T d2f9ya1 130 GMPAPEGYRKALRLMQMAERFK-MPIITFIDT-----PGAYPGV---------GAEERGQSEAIARNLREMSRLGVPVVC 194 (316)
T ss_dssp GCCCHHHHHHHHHHHHHHHHTT-CCEEEEEEE-----SCSCCSH---------HHHHTTHHHHHHHHHHHHHTCSSCEEE
T ss_pred ccccHHHHHHHHHHHHHHHHcC-cceEEEEec-----CcccCCc---------ccccccHHHHHHHHHHHHHhCCCceEE
Confidence 3478888888888888877642 444444332 3333321 111233445666678888999999999
Q ss_pred EEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhH-HHHHHhccCCCCCHHHHHhcCcccee
Q 024298 143 ILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGY-LGEYLALTGEKLNGVEMIACGLATHY 221 (269)
Q Consensus 143 av~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~-~a~~l~ltG~~i~a~eA~~~GLv~~v 221 (269)
.|-|.+.|||..-...+|.+++.+++.++. +.|.+.++..+...--. .+.+. ..+++++.+++|+||+|
T Consensus 195 vv~g~g~~gga~a~~~~d~v~m~~~a~~sv------ispEg~AsILwkd~~~a~eaAea----lklta~dL~~lgiIDeI 264 (316)
T d2f9ya1 195 TVIGEGGSGGALAIGVGDKVNMLQYSTYSV------ISPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKLIDSI 264 (316)
T ss_dssp EEEEEEEHHHHHTTCCCSEEEECTTCEEES------SCHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTSCSCC
T ss_pred EEEhhhhchhhhhhhhhhHHHHHhhhHHhh------ccchhhhhHhhccchhhcchHHH----HhhhhHHHHHcCchhhc
Confidence 999999999998888999999999999983 35555444433322211 22222 35889999999999999
Q ss_pred ccC
Q 024298 222 TLN 224 (269)
Q Consensus 222 v~~ 224 (269)
+|.
T Consensus 265 I~E 267 (316)
T d2f9ya1 265 IPE 267 (316)
T ss_dssp CCC
T ss_pred ccC
Confidence 974
|
| >d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Thermotoga maritima [TaxId: 2336]
Probab=96.82 E-value=0.0052 Score=51.03 Aligned_cols=161 Identities=11% Similarity=0.037 Sum_probs=100.2
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAKSRAAILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~v~~I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
.|...-|.-|+|. ...+++.+-..-..+.++..+.. ++-.|.|.-. ..|..|.+-+ .....+..
T Consensus 65 ~G~~vgvian~~~~~~G~~~~~~a~Kaa~fi~lc~~~-~iPli~l~Dt-pGf~~G~~~E-------------~~g~~~~g 129 (264)
T d1vrga2 65 QGKTVGIVANQPSVLAGVLDIDSSDKAARFIRFLDAF-NIPILTFVDT-PGYLPGVAQE-------------HGGIIRHG 129 (264)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHH-------------HTTHHHHH
T ss_pred cCceEEEEeccccccccchhhhhHHHHHHHHHHHHHh-CCceEEEeec-ccccccHHHH-------------HHhHHHHH
Confidence 3433334555654 33569999999999999888764 3555655542 3344443322 23455677
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHHHH----HhCCEEEEeCCceEecCcccccccCCCchHHHHHhh-h------hH
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAGIS----LQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHL-P------GY 195 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~La----l~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~------g~ 195 (269)
.+++..+..+..|.|+.+-|.++|+|..-+ +.+|++++.+++.++.-.. -++...+.+. . ..
T Consensus 130 a~~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~a~~~vm~p-------e~aa~v~~~~~l~~~~~~~~ 202 (264)
T d1vrga2 130 AKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPSAEIAVMGP-------EGAANIIFKREIEASSNPEE 202 (264)
T ss_dssp HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSCH-------HHHHHHHTHHHHHHSSCHHH
T ss_pred HHHHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccceeEEecCH-------HHhhhhhhhhhhhhhhCcHH
Confidence 778899999999999999999999877332 2488888887777665322 2222222211 0 00
Q ss_pred HHHHH--hccCCCCCHHHHHhcCccceeccCChHHHH
Q 024298 196 LGEYL--ALTGEKLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 196 ~a~~l--~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
...++ .+.-+.-++..+...|++|.|+++.+.-..
T Consensus 203 ~~~~~~~~~~e~~~~~~~aa~~g~iD~VIdP~dTR~~ 239 (264)
T d1vrga2 203 TRRKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKY 239 (264)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHTTSSSEECCGGGHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHH
Confidence 00000 011122367788899999999999887655
|
| >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.82 E-value=0.0019 Score=55.32 Aligned_cols=69 Identities=10% Similarity=0.127 Sum_probs=51.7
Q ss_pred CCCcEEEEEchhcchhhHHHHHhCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHHHHHHhccCCCC--C-----
Q 024298 136 FVKPHVAILDGITMGCGAGISLQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYLGEYLALTGEKL--N----- 208 (269)
Q Consensus 136 ~~kp~Iaav~G~a~GgG~~Lal~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~a~~l~ltG~~i--~----- 208 (269)
-..|+|++|.|.|+|+|..++..||++|+.+++.+.+. |...+.+. +|+.+ +
T Consensus 239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~s~i~lt-----------Gp~~l~~~----------lG~eVy~s~~eLG 297 (333)
T d1uyra1 239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEGQPIILT-----------GAPAINKM----------LGREVYTSNLQLG 297 (333)
T ss_dssp HHSCEEEEESSCEETHHHHHHHHTCCEEEETTCCEESS-----------CHHHHHHH----------SSSCCCSCTHHHH
T ss_pred CCCCEEEEEeCCccccceeecccccEEEEeCCceEEee-----------CHHHHHHh----------cCccccCChhHhC
Confidence 46999999999999999999999999999998776654 12223333 34444 3
Q ss_pred -HHHHHhcCccceeccCC
Q 024298 209 -GVEMIACGLATHYTLNG 225 (269)
Q Consensus 209 -a~eA~~~GLv~~vv~~~ 225 (269)
++=..+-|.+|.+++++
T Consensus 298 G~~i~~~nGv~h~~a~dd 315 (333)
T d1uyra1 298 GTQIMYNNGVSHLTAVDD 315 (333)
T ss_dssp SHHHHHHHTSSSEEESSH
T ss_pred CHhHHhhCCCceEEeCCH
Confidence 23345789999999865
|
| >d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.73 E-value=0.012 Score=48.84 Aligned_cols=161 Identities=11% Similarity=0.116 Sum_probs=101.4
Q ss_pred eCCEEEEEEcCCCC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAKSRAAILNRPSN-LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~v~~I~ln~p~~-~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
+|...-|.-|+|.. ...++.+-.....+.++..+.. ++-+|.|.-. ..|..|.+-+ .....+..
T Consensus 68 ~G~~vgvian~~~~~~G~~~~~~~~Ka~rfi~lc~~~-~iPlv~l~dt-pGf~~G~~~E-------------~~g~~~~g 132 (271)
T d2a7sa2 68 DGRPVGIVANQPTHFAGCLDINASEKAARFVRTCDCF-NIPIVMLVDV-PGFLPGTDQE-------------YNGIIRRG 132 (271)
T ss_dssp SSCEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHH-------------HHCHHHHH
T ss_pred CCeEEEEEeccccccCCCcCHHHHHHHHHHHHHHHHh-CCceEEeech-hhhhhhccHH-------------HhhHHHHH
Confidence 44444455566642 3579999999999999988764 4666666543 3344443222 23455677
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHHHH----HhCCEEEEeCCceEecCcccccccCCCchHHHHHhh-hhH------
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAGIS----LQGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHL-PGY------ 195 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~La----l~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~g~------ 195 (269)
.+++.++..+..|.|+.+-|.++|+|...+ +.+|++++.++++++.- .+-++...+.+. +..
T Consensus 133 a~~~~a~a~~~vP~isvi~~~~~G~~~~am~~~~~~~d~~~AwP~A~igvM-------gpegaa~v~~~~~l~~~~~~~~ 205 (271)
T d2a7sa2 133 AKLLYAYGEATVPKITVITRKAYGGAYCVMGSKDMGCDVNLAWPTAQIAVM-------GASGAVGFVYRQQLAEAAANGE 205 (271)
T ss_dssp HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESS-------CHHHHHHHHTTTTTTGGGTSSC
T ss_pred HHHHHHHHhCCCCeEEEEeCCccchhhhhhcccccccceEEEecceeEeec-------CHHHHHHHHHHHhhhhhhhccc
Confidence 778899999999999999999999875432 24688888888776653 222222222221 110
Q ss_pred -----H-HHHHhccCCCCCHHHHHhcCccceeccCChHHHH
Q 024298 196 -----L-GEYLALTGEKLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 196 -----~-a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
+ ....-..-+.-++..+.+.|++|.|+++.+.-+.
T Consensus 206 ~~~~~~~~~~~e~~e~~~~p~~aa~~g~iD~VIdP~dTR~~ 246 (271)
T d2a7sa2 206 DIDKLRLRLQQEYEDTLVNPYVAAERGYVDAVIPPSHTRGY 246 (271)
T ss_dssp CTTSSTTHHHHHHHTTTSBSHHHHHHTSSSEECCGGGHHHH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHH
Confidence 0 0011112233467788889999999999887654
|
| >d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Propionyl-CoA carboxylase complex B subunit, PccB species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.23 E-value=0.033 Score=45.94 Aligned_cols=161 Identities=10% Similarity=0.084 Sum_probs=99.5
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAKSRAAILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~v~~I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
+|.-.-|.-|+|. ...+++.+-.....+.++..+.. ++-.|.|.-. ..|-.|.+-+ .....+..
T Consensus 63 ~G~~vgvia~~~~~~~G~~~~~~a~Ka~~fi~lc~~~-~iPli~l~d~-pGf~~G~~~E-------------~~g~~~~g 127 (263)
T d1xnya2 63 EGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAF-NVPVLTFVDV-PGFLPGVDQE-------------HDGIIRRG 127 (263)
T ss_dssp TTEEEEEEEECTTTGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHH-------------HTTHHHHH
T ss_pred ccceEEEEecccceecCCcchhhHHHHHHHHHHHHHh-CCceEEeecc-cccccchhHH-------------HHhHHHHH
Confidence 4443334555554 34589999999999999888765 3555555543 3344443322 23355677
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHHHHH----hCCEEEEeCCceEecCcccccccCCCchHHHHHhhhhHH------
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAGISL----QGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHLPGYL------ 196 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~~g~~------ 196 (269)
.+++.++..+..|.|+.|-|.++|+|...+. ..|++++.+++.++.-. +-++...+.+.-...
T Consensus 128 a~~~~a~a~~~vPkitvi~~~~~Gga~~~m~~~~~~~d~~~awP~a~~gvm~-------pe~aa~il~~~~~~~a~~~~~ 200 (263)
T d1xnya2 128 AKLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVMG-------AQGAVNILHRRTIADAGDDAE 200 (263)
T ss_dssp HHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTTCEEESSC-------HHHHHHHHTHHHHHSCCTTCS
T ss_pred HHHHHHHHccCCCeEEEEecCccccceeccCCcccCCcEEEEcchhhhhccC-------HHHHHHHHHHHHHhhhccchH
Confidence 7788899999999999999999998765432 35888888877776532 222333222211100
Q ss_pred --HHHHh--ccCCCCCHHHHHhcCccceeccCChHHHH
Q 024298 197 --GEYLA--LTGEKLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 197 --a~~l~--ltG~~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
..++. ..-+..++..+...|++|.|+++.+.-..
T Consensus 201 ~~~~~~~~~~~~~~~~p~~aA~~g~iD~VIdP~dTR~~ 238 (263)
T d1xnya2 201 ATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRH 238 (263)
T ss_dssp SSHHHHHHHHHHHHSSSHHHHHHTSSSEECCGGGHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHcccCCcccCHHHHHHH
Confidence 00000 00112346678889999999999987654
|
| >d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) species: Propionibacterium freudenreichii [TaxId: 1744]
Probab=96.06 E-value=0.035 Score=45.83 Aligned_cols=161 Identities=10% Similarity=0.009 Sum_probs=98.9
Q ss_pred eCCEEEEEEcCCC-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHH
Q 024298 48 RAKSRAAILNRPS-NLNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETL 126 (269)
Q Consensus 48 ~~~v~~I~ln~p~-~~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~ 126 (269)
+|...-|.=|+|. ...+++.+-.....+.++..+.. ++-+|.|.-. ..|..|.+-+ .....+..
T Consensus 65 ~G~~vgvian~~~~~~G~~~~~~a~Kaarfi~lc~~~-~iPlv~l~D~-pGf~~G~~~E-------------~~g~i~~g 129 (264)
T d1on3a2 65 NGRSVGIVANQPSVMSGCLDINASDKAAEFVNFCDSF-NIPLVQLVDV-PGFLPGVQQE-------------YGGIIRHG 129 (264)
T ss_dssp TTEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHT-TCCEEEEEEE-CCBCCCHHHH-------------HTTHHHHH
T ss_pred ecceEEEEeccchhcccccChHHHHHHHHHHHHHHhc-CCceEEEecc-ccccccHHHH-------------HHHHHHHH
Confidence 3433334556665 35679999998888888888764 4566666543 3344443322 23456677
Q ss_pred HHHHHHHccCCCcEEEEEchhcchhhHHHHH----hCCEEEEeCCceEecCcccccccCCCchHHHHHhh-hh----HHH
Q 024298 127 YQFVYLQGTFVKPHVAILDGITMGCGAGISL----QGMYRVVTDKTVFSNPETQMGFHPDAGASFYLSHL-PG----YLG 197 (269)
Q Consensus 127 ~~l~~~i~~~~kp~Iaav~G~a~GgG~~Lal----~cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l~r~-~g----~~a 197 (269)
.+++.++.++.+|.|+.+-|.++|+|..-+. ..|++++.+++.++ ..++-|+...+-+. .. ..+
T Consensus 130 a~~~~a~a~~~vP~itvi~rkayG~g~~am~g~~~~~d~~~aWP~A~~~-------vMg~Egaa~v~~~~el~a~~~~~~ 202 (264)
T d1on3a2 130 AKMLYAYSEATVPKITVVLRKAYGGSYLAMCNRDLGADAVYAWPSAEIA-------VMGAEGAANVIFRKEIKAADDPDA 202 (264)
T ss_dssp HHHHHHHHHCCSCEEEEEEEEEEHHHHHTTTCGGGTCSEEEECTTCEEE-------SSCHHHHHHHHTHHHHHHSSCHHH
T ss_pred HHHHHHHHcCCCCEEEEEeccccCccccccccccCChhheeeHHhhHhh-------hccHHHHHHHHHhhhhhhhhhhhh
Confidence 7888999999999999999999998764332 35677777666555 43333333322221 10 000
Q ss_pred --HH--HhccCCCCCHHHHHhcCccceeccCChHHHH
Q 024298 198 --EY--LALTGEKLNGVEMIACGLATHYTLNGVRYTA 230 (269)
Q Consensus 198 --~~--l~ltG~~i~a~eA~~~GLv~~vv~~~~l~~~ 230 (269)
.+ .-+.-+.-++..+...|+||+|+++.+.-..
T Consensus 203 ~~~~~~~e~~~~~~~p~~aA~~g~iD~VIdP~eTR~~ 239 (264)
T d1on3a2 203 MRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRK 239 (264)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHTTSSSEECCGGGHHHH
T ss_pred hhHHHHHHHHHHhcCHHHHHHcCCCCeeECHHHHHHH
Confidence 00 0011122356778889999999999886554
|
| >d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Glutaconyl-CoA decarboxylase A subunit species: Acidaminococcus fermentans [TaxId: 905]
Probab=95.39 E-value=0.2 Score=41.84 Aligned_cols=152 Identities=10% Similarity=-0.030 Sum_probs=90.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEE
Q 024298 62 LNALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHV 141 (269)
Q Consensus 62 ~Nal~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~I 141 (269)
.-+++.+-..-..+.++.++.. .+-+|.|.-. ..|-.|.+-+ .....+...+++.++..+.+|.|
T Consensus 96 ~G~l~~~~a~K~~rfi~lc~~~-~iPlv~l~D~-pGf~~g~~~E-------------~~g~~r~ga~~~~a~~~~~VP~i 160 (299)
T d1pixa3 96 GGKLYRQGLVKMNEFVTLCARD-RLPIVWIQDT-TGIDVGNDAE-------------KAELLGLGQSLIYSIQTSHIPQF 160 (299)
T ss_dssp TTEECHHHHHHHHHHHHHHHHT-TCCEEEEECC-CEECCSHHHH-------------HTTHHHHHHHHHHHHHTCCCCEE
T ss_pred CCccCHHHHHHHHHHHHHHHHc-CCeEEEEEeC-CCcccchHHH-------------hhhHHHHHHHHHHHHHhhcceeE
Confidence 4568899999999999988764 3555655432 2344443221 23355666778889999999999
Q ss_pred EEEchhcchhhHHHHHh----CCEEEEeCCceEecCcccccccCCCchHHHH-HhhhhHH-----------H--HHHhc-
Q 024298 142 AILDGITMGCGAGISLQ----GMYRVVTDKTVFSNPETQMGFHPDAGASFYL-SHLPGYL-----------G--EYLAL- 202 (269)
Q Consensus 142 aav~G~a~GgG~~Lal~----cD~~ia~~~a~f~~pe~~~Gl~p~~g~~~~l-~r~~g~~-----------a--~~l~l- 202 (269)
+.|-|.++|+|..-+.. .|++++ +..|...+|+.++-++...+ .+.+... . .++.-
T Consensus 161 svi~r~~~G~a~~am~g~~~~~~~~~~-----~awP~aeigvMg~E~aa~vl~~~el~~~~~~~~~~~e~~e~~~~~~~~ 235 (299)
T d1pixa3 161 EITLRKGTAAAHYVLGGPQGNDTNAFS-----IGTAATEIAVMNGETAATAMYSRRLAKDRKAGKDLQPTIDKMNNLIQA 235 (299)
T ss_dssp EEECSEEETTHHHHTTCTTCTTTEEEE-----EECTTCEEESSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred EEEecccccccccccccCccCccccee-----cCCCccccccccchhhheeehhhhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999988643222 233221 12344455655443333333 2221110 0 11100
Q ss_pred cCCCCCHHHHHhcCccceeccCChHHHHHHH
Q 024298 203 TGEKLNGVEMIACGLATHYTLNGVRYTALYF 233 (269)
Q Consensus 203 tG~~i~a~eA~~~GLv~~vv~~~~l~~~~~~ 233 (269)
.-+.-++..+.+.|+||.|+++.+.-...-.
T Consensus 236 ~~~~~sp~~aAs~~~iD~IIDP~dTR~~L~~ 266 (299)
T d1pixa3 236 FYTKSRPKVCAELGLVDEIVDMNKIRGYVEA 266 (299)
T ss_dssp HHHTTSHHHHHHHTSSSEECCTTTHHHHHHH
T ss_pred HHHhcCHHHHHHhCCcCeeECHHHHHHHHHH
Confidence 0123577888999999999999887655433
|
| >d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ClpP/crotonase superfamily: ClpP/crotonase family: Biotin dependent carboxylase carboxyltransferase domain domain: Acetyl-coenzyme A carboxylase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.10 E-value=1.1 Score=38.53 Aligned_cols=109 Identities=9% Similarity=0.129 Sum_probs=63.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEcCCCCccccCChhHHHHhhccCChhhHHHHHHHHHHHHHHHccCCCcEEEE
Q 024298 64 ALNTSMVGRLKRLYESWEENPDIGFVLMKGAGRAFCSGGDVIALYQLLNEGKFEDFKNFFETLYQFVYLQGTFVKPHVAI 143 (269)
Q Consensus 64 al~~~~~~eL~~~l~~~~~d~~v~~vVltg~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kp~Iaa 143 (269)
.+.++-...-.+.+..+.+...+-+|+|. .-+.|+.|.+-.. ....+....++..+..+.+|+|..
T Consensus 109 v~~p~sA~K~A~~i~d~cd~~~lPLi~l~-D~pGF~~G~~~E~-------------~gilr~GA~iv~A~~~~~vP~i~v 174 (404)
T d1uyra2 109 VWHPNSAFKTAQAINDFNNGEQLPMMILA-NWRGFSGGQRDMF-------------NEVLKYGSFIVDALVDYKQPIIIY 174 (404)
T ss_dssp CBCHHHHHHHHHHHHHHHTTSCCCEEECC-CCCCBCC-------------------CTHHHHHHHHHHHHHTCCSCEEEE
T ss_pred ccCchHHHHHHHHHHHhhhccccceEEee-cCCcccCcHHHHH-------------HHHHHHHHHHHHHHHhcCCCEEEE
Confidence 46677777777888766654555555544 3367888764332 234556667888899999999999
Q ss_pred E--chhcchhhHHHHHhCCEEEEeCC-ceEecCcccccccCCCchHHHH
Q 024298 144 L--DGITMGCGAGISLQGMYRVVTDK-TVFSNPETQMGFHPDAGASFYL 189 (269)
Q Consensus 144 v--~G~a~GgG~~Lal~cD~~ia~~~-a~f~~pe~~~Gl~p~~g~~~~l 189 (269)
| .|.+.||++..+ |-.+-.+. ..|+.|...+|+.++-|+....
T Consensus 175 I~~~g~~~GGa~vv~---~~~~~~~~~~~yAwP~a~~gVm~pEGav~I~ 220 (404)
T d1uyra2 175 IPPTGELRGGSWVVV---DPTINADQMEMYADVNARAGVLEPQGMVGIK 220 (404)
T ss_dssp ECTTCEEEHHHHHTT---CGGGGTTTEEEEEETTCEEESSCHHHHHHHH
T ss_pred EeCCcccchhhhhcc---cCccCCccceEEECCccccccCChhhhhhhe
Confidence 9 677777654432 21111111 1344555666666655555443
|