Citrus Sinensis ID: 024302

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHSLEL
Secondary Structure (PSIPRED)
cccEEccccEEEEEcccccEEEEcccccccccccccccHHHHHccEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccEEHHHHHHHHHcccEEEccccEEEccEEEEEEcccHHHHHcccccHHHHHHHHHHcccEEcccccccccEEcEEEcccccccccHHHHHHHcHHHHHccccccHHHHccccccccccccHHHHHcccccHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccEEEEEcccccEEEEcccccHHHHcccccEEHEHcccEEEccccccccHHHHHccccccccccccHHccccccccccccccHcccccccccEEEEEccccccccccHHHHHHHHHHHcccccccccccccEEEEEccEEcccccccccccccHHHHHHccccEEEEcccccccEEcEEEEccccccccHHHHHHEccHcccccccccHHHcccccccccccccHHHHHHccccccccHcccccccccHHHHHHHccccccc
Coil and Loop (DISEMBL)
maqitsqgglnllfngdgssfgveprdpfqyklgsglrsievhkrklirprngvwssmnkkksskfSVDASlnvsgkgisgeseeydsdeefDELACFRGLVldisyrpvnvVCWKRAICLEFMEktinspngsfyiPAVLRVRHLLQVVKRRRIKnnlsrknlmyrdnftcqycssrenltidhvvpasrggewkWENLVAACFKCNSRKGKKTLEEANMQLsrvpkapkdydilaIPLTSAAIRMLRVRkgtpvewrqylpqhslel
Flexible Loop (DISEMBL)
maqitsqgglnLLFNGDGSSFGVEPRDPFQYKLgsglrsievhkrklirprngvwssmnkkksskfsvdaslnvsgkgisgeseeydsDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKTINSPNGSFYIPAVLRVRHLLqvvkrrriknnlsrknlmyrdNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQlsrvpkapkdydILAIPLTSAAIRMLRVRKGTpvewrqylpqhslel
Low Complexity Region (SEG)
MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWssmnkkksskfsVDASLNVSGKGIsgeseeydsdeefdeLACFRGLVLDISYRPVNVVCWKRAICLEFMEKTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHSLEL
Disordered region (IsUnstruct)
***********LLFN*************FQYKLGSGLRSIEVHKRKLI**********************************************LACFRGLVLDISYRPVNVVCWKRAICLEFMEKTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNS*********************KDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL*******
Disordered Region (DISOPRED)
********GLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEV******************************************************CFRGLVLDISYRPVNVVCWKRAICLEFMEKTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHSLE*
Disordered Region (DISEMBL)
MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSS************ASLNVSG***************FDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHSLEL
Disordered Region (DISPRO)
*AQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVW****K*K***********************YDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKTINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHSLEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
255568954	275	endonuclease, putative [Ricinus communis	0.962	0.941	0.650	2e-95
225441641	277	PREDICTED: uncharacterized protein LOC10	0.973	0.945	0.654	4e-95
449446780	277	PREDICTED: uncharacterized protein LOC10	0.959	0.931	0.635	1e-93
224123804	272	predicted protein [Populus trichocarpa]	0.955	0.944	0.652	1e-92
356571688	288	PREDICTED: uncharacterized protein LOC10	0.955	0.892	0.586	6e-84
297739746	187	unnamed protein product [Vitis vinifera]	0.657	0.946	0.806	7e-84
356560967	282	PREDICTED: uncharacterized protein LOC10	0.959	0.914	0.597	4e-82
224145957	194	predicted protein [Populus trichocarpa]	0.680	0.943	0.769	2e-81
297853378	283	HNH endonuclease domain-containing prote	0.973	0.925	0.571	9e-81
357508647	273	hypothetical protein MTR_7g085420 [Medic	0.914	0.901	0.573	4e-80

>gi|255568954|ref|XP_002525447.1| endonuclease, putative [Ricinus communis] gi|223535260|gb|EEF36937.1| endonuclease, putative [Ricinus communis]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 184/283 (65%), Positives = 212/283 (74%), Gaps = 24/283 (8%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGL----RSIEVHKRKL--IRPRNGV 54
           MAQ T+QG L LLFN DG    +         LG+G      S  V K K   I     +
Sbjct: 1   MAQFTAQGRLKLLFNSDGIQCKL---------LGNGFVGGCTSFRVQKGKFRYIGSSTRL 51

Query: 55  WSSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVC 114
            +S   KKS  F+ +ASLN   +   GESE+YDS+ E D+LACFRGLVLDISYRPVNVVC
Sbjct: 52  HASSVSKKSRHFNAEASLNAEEENDIGESEDYDSEYETDDLACFRGLVLDISYRPVNVVC 111

Query: 115 WKRAICLEFMEK---------TINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLM 165
           WKRAICLEFMEK         T+NSP+GSFYIPAVLRV HLLQVVKRRRIK+NLSRKN++
Sbjct: 112 WKRAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLRVPHLLQVVKRRRIKSNLSRKNVL 171

Query: 166 YRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSR 225
           +RDN+TCQYCSSRENLTIDHV+P +RGG+W WENLV AC KCNS+KG+KT EEANM+L +
Sbjct: 172 HRDNYTCQYCSSRENLTIDHVLPTARGGQWTWENLVTACSKCNSKKGQKTPEEANMKLIK 231

Query: 226 VPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHSLE 268
           VPKAPK+YDILAIPLTSAAIRMLR+RKG P EWRQYL + S E
Sbjct: 232 VPKAPKEYDILAIPLTSAAIRMLRMRKGMPEEWRQYLARPSSE 274

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441641|ref|XP_002282210.1| PREDICTED: uncharacterized protein LOC100264031 [Vitis vinifera]

 Score =  353 bits (907), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 184/281 (65%), Positives = 208/281 (74%), Gaps = 19/281 (6%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQ-YKLGSGL-RSIEVHKRKL-IRPRNGVWSS 57
           MAQ T+QG       G     GVEP+DP+  YK G G      +H  KL       ++SS
Sbjct: 2   MAQFTAQG------QGRLKPLGVEPKDPYHCYKFGGGCWPRFRIHSPKLGFLDSTKLYSS 55

Query: 58  MNKKKSSKFSVDASLNVSGKGISGES-EEYDSDEEFDELACFRGLVLDISYRPVNVVCWK 116
               KS+ F   A LNV  KGI  +     D + E DELACFRGLVLD+SYRPVNVVCW+
Sbjct: 56  SLNTKSNHFRAQARLNVGDKGIYDDDVHAGDGEFEMDELACFRGLVLDLSYRPVNVVCWR 115

Query: 117 RAICLEFMEK---------TINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYR 167
           RAICLEFMEK         T+NSP+GSFYIPAVLRV HLLQVVKRRRIKNNLSRKN+ YR
Sbjct: 116 RAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLRVPHLLQVVKRRRIKNNLSRKNIFYR 175

Query: 168 DNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVP 227
           DNFTCQYCSS ENLT+DHV+P +RGGEWKWENLV AC KCNS+KG+KTLEEANM+LS+VP
Sbjct: 176 DNFTCQYCSSGENLTVDHVLPIARGGEWKWENLVTACAKCNSKKGQKTLEEANMKLSKVP 235

Query: 228 KAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHSLE 268
           KAPKDYDILAIPLT+ AIRMLR+RKGTP EWRQYL + S E
Sbjct: 236 KAPKDYDILAIPLTNTAIRMLRMRKGTPEEWRQYLSKPSAE 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446780|ref|XP_004141149.1| PREDICTED: uncharacterized protein LOC101207660 [Cucumis sativus]

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 176/277 (63%), Positives = 212/277 (76%), Gaps = 19/277 (6%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNK 60
           MAQ T+   L LL NGDG  FG E +D F+YKL    RS+   +  L RP +   SS + 
Sbjct: 1   MAQFTAHTRLKLLLNGDGLPFGSESKDRFRYKL----RSVRPRRFPLSRPSSSTTSSTSA 56

Query: 61  -KKSSKFSVDASLNVSGKGISGESEE-----YDSDEEFDELACFRGLVLDISYRPVNVVC 114
            +K ++ + +  + V  + ++G  ++     YD + E D+LACFRGLVLDISYRPVNVVC
Sbjct: 57  LRKPTQHAAEVRVGVRDESVNGGDDDVVGFDYDYELESDDLACFRGLVLDISYRPVNVVC 116

Query: 115 WKRAICLEFMEK---------TINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLM 165
           WKRAICLEFMEK         T+NSP+GSFYIPAVLRV HLLQVVKRRRIKN+LSRKN++
Sbjct: 117 WKRAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLRVPHLLQVVKRRRIKNSLSRKNIL 176

Query: 166 YRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSR 225
           YRDN+TCQYCSS E+LTIDHV+P SRGGEW WENLVAAC KCNS+KG+KT+EEANM+L +
Sbjct: 177 YRDNYTCQYCSSHESLTIDHVLPISRGGEWTWENLVAACVKCNSKKGQKTVEEANMKLKK 236

Query: 226 VPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 262
            PKAPKDYDILAIPLTS AI+ML++RKGTP EWRQYL
Sbjct: 237 TPKAPKDYDILAIPLTSTAIKMLKLRKGTPEEWRQYL 273

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123804|ref|XP_002319168.1| predicted protein [Populus trichocarpa] gi|222857544|gb|EEE95091.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 184/282 (65%), Positives = 213/282 (75%), Gaps = 25/282 (8%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKL-----IRPRNGVW 55
           MAQ T+ G L   FN DG+S+ +   D        GLRS +  KRK+        R    
Sbjct: 1   MAQFTAHGRLKFPFNNDGASWKLLGND-----FVGGLRSFQNQKRKIRFLGTSGTRLYAA 55

Query: 56  SSMNKKKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVCW 115
           SS++KK    F  +AS +VS   ++ +SEE   D E DELACFRGLVLDISYRPVNVVCW
Sbjct: 56  SSLSKK-PKHFYTEASQSVSE--VNDDSEE---DYERDELACFRGLVLDISYRPVNVVCW 109

Query: 116 KRAICLEFMEKT---------INSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMY 166
           +RAICLEFMEK          +NSP+GSFYIPAVLRV HLLQVVKRRRIK+NLSRKN++Y
Sbjct: 110 RRAICLEFMEKADVLEYYDQAVNSPSGSFYIPAVLRVPHLLQVVKRRRIKSNLSRKNILY 169

Query: 167 RDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRV 226
           RDN+TCQYCSSRENLTIDHV+P +RGGEWKWENLVAAC KCNS+KG+KT EEANM+LS+V
Sbjct: 170 RDNYTCQYCSSRENLTIDHVLPTARGGEWKWENLVAACAKCNSKKGQKTPEEANMKLSKV 229

Query: 227 PKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQHSLE 268
           PKAPKDYDILAIPLTSAAIRMLR+RKG P EW+QYL + S E
Sbjct: 230 PKAPKDYDILAIPLTSAAIRMLRMRKGMPEEWQQYLARPSSE 271

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571688|ref|XP_003554006.1| PREDICTED: uncharacterized protein LOC100787021 isoform 1 [Glycine max] gi|356571690|ref|XP_003554007.1| PREDICTED: uncharacterized protein LOC100787021 isoform 2 [Glycine max]

 Score =  316 bits (810), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 170/290 (58%), Positives = 197/290 (67%), Gaps = 33/290 (11%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNK 60
           MAQ T+QG L LL NG+G S  +E +DPF YK     RS++ HKR+  R           
Sbjct: 1   MAQFTTQGRLKLLLNGEGVSSVLEHKDPFLYKC----RSVQTHKRR-TRYAGSSARIYYA 55

Query: 61  KKSSKFSVDASLNVSGKGISGESEEYDSDE-------------------EFDELACFRGL 101
             SS  S     N   +  SG    +D  +                   + D L+CFRGL
Sbjct: 56  STSSLSSKSHRCNAEARHTSGNGSVHDEYDDIDDDEDEDDEEEEEEDVFDRDGLSCFRGL 115

Query: 102 VLDISYRPVNVVCWKRAICLEFMEK---------TINSPNGSFYIPAVLRVRHLLQVVKR 152
           VLDI+YRPVNVV WKRAICLEFMEK         T+NSP+GSFYIPAVLRV HLLQVVKR
Sbjct: 116 VLDIAYRPVNVVGWKRAICLEFMEKADVLEYYAKTVNSPSGSFYIPAVLRVPHLLQVVKR 175

Query: 153 RRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 212
           R IKNNLSRKN+++RDN+TCQYCSS ENLTIDHVVPA+ GGEW WENLV AC KCN +KG
Sbjct: 176 RIIKNNLSRKNILFRDNYTCQYCSSHENLTIDHVVPAALGGEWTWENLVTACAKCNCKKG 235

Query: 213 KKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 262
           +KTLEEA M+L + PK PKDYDILAIPLT+AA+RML +RKGTP EWRQYL
Sbjct: 236 RKTLEEAKMKLIKPPKVPKDYDILAIPLTAAALRMLTIRKGTPEEWRQYL 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739746|emb|CBI29928.3| unnamed protein product [Vitis vinifera]

 Score =  316 bits (809), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 150/186 (80%), Positives = 165/186 (88%), Gaps = 9/186 (4%)

Query: 92  FDELACFRGLVLDISYRPVNVVCWKRAICLEFMEK---------TINSPNGSFYIPAVLR 142
            DELACFRGLVLD+SYRPVNVVCW+RAICLEFMEK         T+NSP+GSFYIPAVLR
Sbjct: 1   MDELACFRGLVLDLSYRPVNVVCWRRAICLEFMEKADVLEYYDQTVNSPSGSFYIPAVLR 60

Query: 143 VRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVA 202
           V HLLQVVKRRRIKNNLSRKN+ YRDNFTCQYCSS ENLT+DHV+P +RGGEWKWENLV 
Sbjct: 61  VPHLLQVVKRRRIKNNLSRKNIFYRDNFTCQYCSSGENLTVDHVLPIARGGEWKWENLVT 120

Query: 203 ACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 262
           AC KCNS+KG+KTLEEANM+LS+VPKAPKDYDILAIPLT+ AIRMLR+RKGTP EWRQYL
Sbjct: 121 ACAKCNSKKGQKTLEEANMKLSKVPKAPKDYDILAIPLTNTAIRMLRMRKGTPEEWRQYL 180

Query: 263 PQHSLE 268
            + S E
Sbjct: 181 SKPSAE 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560967|ref|XP_003548757.1| PREDICTED: uncharacterized protein LOC100810482 [Glycine max]

 Score =  310 bits (794), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 169/283 (59%), Positives = 201/283 (71%), Gaps = 25/283 (8%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEP-RDPFQYKLGSGLRSIEVHKRKLIR-----PRNGV 54
           MAQ T+QG L LLFNG+G S  +E  +DPF Y   +  RS++ HKR+  R      R   
Sbjct: 1   MAQFTTQGRLKLLFNGEGVSSVLEHNKDPFLY---NKCRSVQTHKRRTTRCIGSSARIYY 57

Query: 55  WSSMNKKKSSKFSVDASLNVSGKG------ISGESEEYDSDEEFDELACFRGLVLDISYR 108
            SS    K+   + +A L  SG G           ++ D   + D L+CFRGLVLDI+YR
Sbjct: 58  VSSSLSNKTHLCNAEAWL-TSGNGSVHDEYDDDVEDDDDDVFDRDGLSCFRGLVLDIAYR 116

Query: 109 PVNVVCWKRAICLEFMEK---------TINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNL 159
           PVNVV WKRAICLEFMEK         T+NSP+GSFYIPAVLRV  LLQVVKRR +KNNL
Sbjct: 117 PVNVVGWKRAICLEFMEKADVLEYYAKTVNSPSGSFYIPAVLRVPQLLQVVKRRIVKNNL 176

Query: 160 SRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEA 219
           SRKN+++RDN+TCQYCSS ENLTIDHV+P + GGEW WENLV AC KCN +KG+KTLEEA
Sbjct: 177 SRKNILFRDNYTCQYCSSHENLTIDHVMPTALGGEWTWENLVTACAKCNCKKGRKTLEEA 236

Query: 220 NMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 262
            M+L + PK PKDYDILAIPLT+AA+RML +RKGTP EWRQYL
Sbjct: 237 KMKLIKPPKVPKDYDILAIPLTAAALRMLTLRKGTPEEWRQYL 279

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145957|ref|XP_002325827.1| predicted protein [Populus trichocarpa] gi|222862702|gb|EEF00209.1| predicted protein [Populus trichocarpa]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 150/195 (76%), Positives = 170/195 (87%), Gaps = 12/195 (6%)

Query: 84  EEYDSDEEFDELACFRGLVLDISYRPVNVVCWKRAICLEFMEKT---------INSPNGS 134
           E+YDS  E DELACFRGLVLDISYRPVNVVCWKRA+CLEFMEK          +NSP+GS
Sbjct: 2   EDYDS--ERDELACFRGLVLDISYRPVNVVCWKRAMCLEFMEKADVLEYYDQAVNSPSGS 59

Query: 135 FYIPAVLRVRHLLQVVKRRRI-KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGG 193
           FYIPAVLRV HLLQVVKRRRI ++ LSRKN+++RDN+TCQYCSSRENLTIDHV+P ++GG
Sbjct: 60  FYIPAVLRVPHLLQVVKRRRIFRSKLSRKNILHRDNYTCQYCSSRENLTIDHVLPTAQGG 119

Query: 194 EWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKG 253
           EW+WENLV AC KCNS+KGKKT EEANM+LS+VPKAPKDYDILAIPLTSAAIRMLR+RKG
Sbjct: 120 EWQWENLVTACAKCNSKKGKKTPEEANMKLSKVPKAPKDYDILAIPLTSAAIRMLRIRKG 179

Query: 254 TPVEWRQYLPQHSLE 268
            P EW+QYL + S E
Sbjct: 180 MPEEWQQYLARPSSE 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853378|ref|XP_002894570.1| HNH endonuclease domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297340412|gb|EFH70829.1| HNH endonuclease domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  306 bits (783), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 160/280 (57%), Positives = 201/280 (71%), Gaps = 18/280 (6%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQ---YKLGSGLRSIEVHKRKL---IRPRNGV 54
           MA  +S+  L LL + DG SFGV+ RD F+   Y  G G   + + + +L    R  +  
Sbjct: 1   MAHFSSR--LKLLSSNDGLSFGVDSRDQFRQSLYMAGGGTPLVSIRRSRLKFCARIFSSY 58

Query: 55  WSSMNKKKSSKF-SVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVV 113
                +KK   F + + +L +       + +  D   E D+L+CFRGLVLDISYRPVNVV
Sbjct: 59  SFPYKRKKIRDFDNTEKNLGIDEDNDDWDFDGDDDVLETDDLSCFRGLVLDISYRPVNVV 118

Query: 114 CWKRAICLEFMEK---------TINSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNL 164
           CWKRAICLE+M+K         T++SP GSFYIPAVLRV HLLQVVKRRR+KN+LSRKN+
Sbjct: 119 CWKRAICLEYMDKADVLEYYDQTVSSPTGSFYIPAVLRVPHLLQVVKRRRVKNSLSRKNI 178

Query: 165 MYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLS 224
           + RD++TCQYCSSRENLTIDHV+P SRGGEW W+NLVAAC +CNS+KG+KT EEA+M+L 
Sbjct: 179 LLRDDYTCQYCSSRENLTIDHVMPVSRGGEWSWQNLVAACSRCNSKKGQKTAEEAHMKLL 238

Query: 225 RVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYLPQ 264
           +VPK PKDYDI+AIPLT+AAIRMLR  KG P EWR+YL +
Sbjct: 239 KVPKEPKDYDIVAIPLTNAAIRMLRSNKGMPEEWRRYLAK 278

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508647|ref|XP_003624612.1| hypothetical protein MTR_7g085420 [Medicago truncatula] gi|124365579|gb|ABN09813.1| HNH nuclease [Medicago truncatula] gi|355499627|gb|AES80830.1| hypothetical protein MTR_7g085420 [Medicago truncatula]

 Score =  303 bits (777), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 164/286 (57%), Positives = 195/286 (68%), Gaps = 40/286 (13%)

Query: 1   MAQITSQGGLNLLFNGDGSSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMNK 60
           MAQ T+QG L LLFNG+  S  +                ++ HKR+     +  ++S   
Sbjct: 1   MAQFTAQGRLKLLFNGETVSSLM----------------VQTHKRRTSYKGSSSFASRFH 44

Query: 61  KKSSKF--SVDASLNVSGKGISGESEEY------------DSDEEFDELACFRGLVLDIS 106
             SS +  S     N   +   G  +EY            D   E D L+ FRGLVLDIS
Sbjct: 45  YASSSYLRSKVKCCNAEARPSEGVHDEYAYVFEYDEDDDDDDVFEGDGLSGFRGLVLDIS 104

Query: 107 YRPVNVVCWKRAICLEFMEK---------TINSPNGSFYIPAVLRVRHLLQVVKRRRI-K 156
           YRPVNVVCWKRAICLEFMEK         T+NSP+GSFYIPAVLRVRHLLQV+KRRR+ K
Sbjct: 105 YRPVNVVCWKRAICLEFMEKADVLEYYDKTVNSPSGSFYIPAVLRVRHLLQVIKRRRVVK 164

Query: 157 NNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTL 216
           N+LSRKN+++RDN+TCQYCSS ENLTIDHVVPA+ GGEW WENLV AC KCNS+KG+K+L
Sbjct: 165 NSLSRKNILFRDNYTCQYCSSHENLTIDHVVPAALGGEWTWENLVTACSKCNSKKGRKSL 224

Query: 217 EEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 262
           EEA M+L +VPK PKDYDILAIPLT+AA+R+L  RKGTP EWRQYL
Sbjct: 225 EEAKMKLMKVPKKPKDYDILAIPLTAAALRVLTARKGTPDEWRQYL 270

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2061476	284	AT2G23840 [Arabidopsis thalian	0.624	0.591	0.757	2.2e-76
TIGR_CMR|SPO_2123	194	SPO_2123 "HNH endonuclease fam	0.457	0.634	0.389	4.9e-21
UNIPROTKB|Q3Z918	177	DET0537 "HNH endonuclease doma	0.557	0.847	0.360	1e-20
TIGR_CMR|DET_0537	177	DET_0537 "HNH endonuclease dom	0.557	0.847	0.360	1e-20
UNIPROTKB|O53196	222	Rv2469c "Uncharacterized prote	0.561	0.680	0.348	3.5e-20
UNIPROTKB|Q0BWS6	197	HNE_3394 "HNH endonuclease dom	0.472	0.644	0.328	2.2e-18
UNIPROTKB|Q604E9	196	MCA2596 "HNH endonuclease doma	0.267	0.367	0.426	8.2e-12
UNIPROTKB|Q74BH1	101	GSU2070 "HNH endonuclease fami	0.237	0.633	0.371	2.6e-08
TIGR_CMR|GSU_2070	101	GSU_2070 "HNH endonuclease fam	0.237	0.633	0.371	2.6e-08

TAIR|locus:2061476 AT2G23840 [Arabidopsis thaliana (taxid:3702)]

 Score = 721 (258.9 bits), Expect = 2.2e-76, Sum P(2) = 2.2e-76
 Identities = 134/177 (75%), Positives = 155/177 (87%)

Query:    95 LACFRGLVLDISYRPVNVVCWKRAICLEFMEK---------TINSPNGSFYIPAVLRVRH 145
             L+CFRGLVLDISYRPVNVVCWKRAICLE+M+K         T++SP GSFYIPAVLRV H
Sbjct:   101 LSCFRGLVLDISYRPVNVVCWKRAICLEYMDKADVLEYYDQTVSSPTGSFYIPAVLRVPH 160

Query:   146 LLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACF 205
             LLQVVKRRR+KN+LSRKN++ RD++TCQYCSSRENLTIDHV+P SRGGEW W+NLVAAC 
Sbjct:   161 LLQVVKRRRVKNSLSRKNILLRDDYTCQYCSSRENLTIDHVMPVSRGGEWTWQNLVAACS 220

Query:   206 KCNSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 262
             +CNSRKG+KT +EA+M+L +VPK PKDYDI+AIPLT+AAIRMLR  KG P EWRQYL
Sbjct:   221 RCNSRKGQKTADEAHMKLLKVPKEPKDYDIVAIPLTNAAIRMLRSNKGMPEEWRQYL 277

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TIGR_CMR|SPO_2123 SPO_2123 "HNH endonuclease family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 53/136 (38%), Positives = 79/136 (58%)

Query:   105 ISYRPVNVVCWKRAICLEFMEKT---------INSPNGSFYIPAVLRVRHLLQVVKRRRI 155
             +SY P+++  W+ AI   ++++          + SP+    IP+V+ ++  ++  KR   
Sbjct:    31 LSYYPLSLWPWQEAIKAAWLDRVDIIAEYDEVVRSPSVVLRIPSVVVLKDYVKPQKRVAF 90

Query:   156 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 215
                 +R NL  RD F CQYC  + +LT DHVVP + GG   WEN+VAAC  CN RKG K+
Sbjct:    91 ----TRFNLFLRDEFRCQYCGGKGDLTFDHVVPRAAGGVTSWENVVAACAPCNLRKGSKS 146

Query:   216 LEEANMQLSRVPKAPK 231
             L +ANM L R P+ P+
Sbjct:   147 LRQANMSLRRPPRRPQ 162

GO:0003824 "catalytic activity" evidence=ISS

GO:0006259 "DNA metabolic process" evidence=ISS

UNIPROTKB|Q3Z918 DET0537 "HNH endonuclease domain protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 62/172 (36%), Positives = 91/172 (52%)

Query:   101 LVLDISYRPVNVVCWKRAICLEFMEKTINSPNGS---------FYIPAVLRVRHLLQVVK 151
             LVL+  Y+P+NV   +RA+ L +  K     NGS         F +P+V+R+  L   +K
Sbjct:     7 LVLNQDYQPLNVCHVRRAVLLVYQSKAEMLENGSGFWHSEKDLFALPSVIRLSCL---IK 63

Query:   152 RRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSR 210
                ++  L+R  +  RD  TCQYC  ++  LTIDHV P  +GG   WEN+V AC  CN  
Sbjct:    64 HPPLRPKLNRAEIFSRDKHTCQYCGRKDLELTIDHVNPKHQGGPHVWENVVTACLHCNRL 123

Query:   211 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 262
             K  +T E+A+M+L   P  P+     ++P ++ +IR          EWR YL
Sbjct:   124 KAGRTPEQAHMKLLSTPGVPQYRYGYSLPRSNGSIRH---------EWRPYL 166

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_0537 DET_0537 "HNH endonuclease domain protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 62/172 (36%), Positives = 91/172 (52%)

Query:   101 LVLDISYRPVNVVCWKRAICLEFMEKTINSPNGS---------FYIPAVLRVRHLLQVVK 151
             LVL+  Y+P+NV   +RA+ L +  K     NGS         F +P+V+R+  L   +K
Sbjct:     7 LVLNQDYQPLNVCHVRRAVLLVYQSKAEMLENGSGFWHSEKDLFALPSVIRLSCL---IK 63

Query:   152 RRRIKNNLSRKNLMYRDNFTCQYCSSRE-NLTIDHVVPASRGGEWKWENLVAACFKCNSR 210
                ++  L+R  +  RD  TCQYC  ++  LTIDHV P  +GG   WEN+V AC  CN  
Sbjct:    64 HPPLRPKLNRAEIFSRDKHTCQYCGRKDLELTIDHVNPKHQGGPHVWENVVTACLHCNRL 123

Query:   211 KGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 262
             K  +T E+A+M+L   P  P+     ++P ++ +IR          EWR YL
Sbjct:   124 KAGRTPEQAHMKLLSTPGVPQYRYGYSLPRSNGSIRH---------EWRPYL 166

GO:0003824 "catalytic activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|O53196 Rv2469c "Uncharacterized protein" [Mycobacterium tuberculosis H37Rv (taxid:83332)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 61/175 (34%), Positives = 87/175 (49%)

Query:    99 RGLVLDISYRPVNVVCWKRAICLEFMEKT-----------INSPNGSFYIPAVLRVRHLL 147
             R L+L+ +Y P+  +  +RAI +    K            I+S   S  +P+V+++R  +
Sbjct:    56 RVLLLNSTYEPLTALSMRRAIVMVICGKADVVHEDPSGPVIHSATRSILVPSVIQLRSYV 115

Query:   148 QVVKRRRIKNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKC 207
             +V  R R+   ++R  LM+RD F C YC  + + T+DHVVP SRGG   WEN VA C  C
Sbjct:   116 RVPYRARVP--MTRAALMHRDRFCCAYCGGKAD-TVDHVVPRSRGGAHSWENCVACCSPC 172

Query:   208 NSRKGKKTLEEANMQLSRVPKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQYL 262
             N RKG + L E    L R P          +P T    R+L   K     W +YL
Sbjct:   173 NHRKGDRLLTELGWALRRAP----------LPPTGPHWRLLSAVKELDPSWARYL 217

GO:0005576 "extracellular region" evidence=IDA

UNIPROTKB|Q0BWS6 HNE_3394 "HNH endonuclease domain protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 46/140 (32%), Positives = 74/140 (52%)

Query:   105 ISYRPVNVVCWKRAICLEFMEKT---------INSPNGSFYIPAVLRVRHLLQVVKRRRI 155
             +SY P+++  W+  I   F+++          + SP+    +P+V+ +R     V++ R 
Sbjct:    34 LSYYPLSLWPWQEVIKAVFLDRVDIIAEYDYVVRSPSREMRLPSVIALRDF---VRQDRA 90

Query:   156 KNNLSRKNLMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 215
                 +R N+  RD F C YC + +NLT DHV+P S+GG   WEN+V AC  CN  KG K 
Sbjct:    91 PA-FTRFNVFLRDGFKCAYCGAHDNLTFDHVIPRSKGGRTTWENIVTACSPCNLAKGGKL 149

Query:   216 LEEANMQLSRVPKAPKDYDI 235
             L  + + L   P  P ++ +
Sbjct:   150 LRASGLDLQHRPFRPNNFQL 169

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q604E9 MCA2596 "HNH endonuclease domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 32/75 (42%), Positives = 41/75 (54%)

Query:   159 LSRKNLMYRDNFTCQYCSS---RENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 215
             L+   L  RD   C YC +      L+ DH+ P SRGG   W N+V AC +CN+ K  +T
Sbjct:    86 LNNAALFRRDGHICLYCGNLFRHSELSRDHIQPTSRGGSDTWNNVVTACKRCNNHKAGRT 145

Query:   216 LEEANMQLSRVPKAP 230
              EEA MQL  +P  P
Sbjct:   146 PEEAKMQLLAIPFTP 160

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74BH1 GSU2070 "HNH endonuclease family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 110 (43.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
 Identities = 26/70 (37%), Positives = 39/70 (55%)

Query:   148 QVVKRRRIKNNLSRKNLMYR---DNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLV 201
             Q ++R + K    R++  ++      TC +C      E LT+DHVVP  RGG+    N+V
Sbjct:    11 QEIRREKDKARELRRSRWWQTVISRRTCHWCGGDFPPEELTMDHVVPIVRGGKSSRGNVV 70

Query:   202 AACFKCNSRK 211
              AC +CN+RK
Sbjct:    71 PACKECNNRK 80

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_2070 GSU_2070 "HNH endonuclease family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 110 (43.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
 Identities = 26/70 (37%), Positives = 39/70 (55%)

Query:   148 QVVKRRRIKNNLSRKNLMYR---DNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLV 201
             Q ++R + K    R++  ++      TC +C      E LT+DHVVP  RGG+    N+V
Sbjct:    11 QEIRREKDKARELRRSRWWQTVISRRTCHWCGGDFPPEELTMDHVVPIVRGGKSSRGNVV 70

Query:   202 AACFKCNSRK 211
              AC +CN+RK
Sbjct:    71 PACKECNNRK 80

GO:0004519 "endonuclease activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
COG1403	146	COG1403, McrA, Restriction endonuclease [Defense m	5e-17
pfam01844	47	pfam01844, HNH, HNH endonuclease	3e-11
cd00085	57	cd00085, HNHc, HNH nucleases; HNH endonuclease sig	2e-10
smart00507	52	smart00507, HNHc, HNH nucleases	6e-09
pfam13395	54	pfam13395, HNH_4, HNH endonuclease	6e-04

>gnl|CDD|224321 COG1403, McrA, Restriction endonuclease [Defense mechanisms]

 Score = 75.4 bits (185), Expect = 5e-17
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 3/105 (2%)

Query: 128 INSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSS-RENLTIDHV 186
           + S +     P+V  +    +    +R      R+ ++ RDN  CQYC S   +L +DH+
Sbjct: 30  LASESKDLRRPSVTDLTGESKRPSEKRPAKT--RRAVLLRDNGLCQYCGSVGTDLEVDHI 87

Query: 187 VPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPK 231
           VP SRGG   WENL   C +C+++KG +   +A M+L   P+ P+
Sbjct: 88  VPLSRGGASAWENLETLCERCHNKKGSRLPGKAGMKLRVKPRKPE 132

Length = 146

>gnl|CDD|216737 pfam01844, HNH, HNH endonuclease

 Score = 56.9 bits (138), Expect = 3e-11
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 172 CQYC----SSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK 214
           CQYC       + L +DH++P S+GG     NLV  C  C+ RK  +
Sbjct: 1   CQYCGRPFKDTDALEVDHIIPRSKGGADDLSNLVLLCRSCHRRKHAR 47

Length = 47

>gnl|CDD|238038 cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins

 Score = 55.2 bits (133), Expect = 2e-10
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 161 RKNLMYRDNFTCQYC---SSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG 212
           R  L+ RD   C YC      E L +DH++P S GG    +NLV  C KC+ +K 
Sbjct: 4   RLVLLARD-GLCPYCGKPGGTEGLEVDHIIPLSDGGNNDLDNLVLLCRKCHRKKH 57

The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins. Length = 57

>gnl|CDD|214702 smart00507, HNHc, HNH nucleases

 Score = 50.9 bits (122), Expect = 6e-09
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 161 RKNLMYRDNFTCQYCSSREN--LTIDHVVPASRGGEWKWENLVAACFKCNS 209
           R+ L++RD   C YC    +  L +DH++P S GG    +NLV  C KC+ 
Sbjct: 3   RRLLLHRD-GVCAYCGKPASEGLEVDHIIPLSDGGNDDLDNLVLLCPKCHI 52

Length = 52

>gnl|CDD|222099 pfam13395, HNH_4, HNH endonuclease

 Score = 36.7 bits (86), Expect = 6e-04
 Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 8/52 (15%)

Query: 172 CQYCS--------SRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKT 215
           C Y                IDH++P SR  +    N V    + N  K  +T
Sbjct: 1   CPYTGKPISIDDLFSNKYDIDHIIPQSRSFDDSLWNKVLVLREANREKSNRT 52

This HNH nuclease domain is found in CRISPR-related proteins. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
COG1403	146	McrA Restriction endonuclease [Defense mechanisms]	99.7
PF13395	54	HNH_4: HNH endonuclease	99.37
cd00085	57	HNHc HNH nucleases; HNH endonuclease signature whi	99.31
TIGR01865	805	cas_Csn1 CRISPR-associated protein, Csn1 family. C	99.25
smart00507	52	HNHc HNH nucleases.	99.22
PF01844	47	HNH: HNH endonuclease; InterPro: IPR002711 HNH end	99.14
PRK11295	113	hypothetical protein; Provisional	98.96
TIGR02646	144	conserved hypothetical protein TIGR02646. Members	98.91
PF14279	71	HNH_5: HNH endonuclease	97.4
COG3513	1088	Predicted CRISPR-associated nuclease, contains Mcr	96.51
PHA02565	157	49 recombination endonuclease VII; Provisional	95.36
COG3183	272	Predicted restriction endonuclease [Defense mechan	95.35
smart00782	47	PhnA_Zn_Ribbon PhnA Zinc-Ribbon. This protein fami	95.35
PF05766	189	NinG: Bacteriophage Lambda NinG protein; InterPro:	94.35
COG3440	301	Predicted restriction endonuclease [Defense mechan	93.77
PF13391	66	HNH_2: HNH endonuclease	93.72
TIGR02986	424	restrict_Alw26I type II restriction endonuclease,	93.38
PF06147	200	DUF968: Protein of unknown function (DUF968); Inte	91.25
TIGR03031	802	cas_csx12 CRISPR-associated protein, Csx12 family.	90.27
PF09665	511	RE_Alw26IDE: Type II restriction endonuclease (RE_	88.57

>COG1403 McrA Restriction endonuclease [Defense mechanisms]

Probab=99.70  E-value=3.7e-17  Score=131.43  Aligned_cols=125  Identities=30%  Similarity=0.556  Sum_probs=107.9

Q ss_pred             cceeeeecHHHHHHHHhhCce--------eecCCceeecceEEEEeeceecccccccCCHHHHHHHHHHCCCccccCCCC
Q 024302          107 YRPVNVVCWKRAICLEFMEKT--------INSPNGSFYIPAVLRVRHLLQVVKRRRIKNNLSRKNLMYRDNFTCQYCSSR  178 (269)
Q Consensus       107 y~Pl~~~s~qrAv~l~~~~k~--------v~s~s~~~~vPsVIrL~~yv~~p~r~~v~~~~~R~~Vl~RD~~~C~YCG~~  178 (269)
                      |.|....+|++++..+..++.        ..+.+.....|.+..+..+.+.+...  .++.+|..++.+|++.|+||+..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~d~~~c~~c~~~   78 (146)
T COG1403           1 YNPLESKSIRPALDRLVSQRAKHVAEYPCLASESKDLRRPSVTDLTGESKRPSEK--RPAKTRRAVLLRDNGLCQYCGSV   78 (146)
T ss_pred             CccccccchhHHHHHHhhcccccccCcceecceecccccCccceeeeeecccCCC--CchHHHHHHHccccccccccCCc
Confidence            578889999999999998772        33334566789999999887666443  36889999999999999999987


Q ss_pred             C-CCccceeeecCCCCCcchhhHHHhchhhhcCcCCCCHHHhccccccCCCCCCcc
Q 024302          179 E-NLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLSRVPKAPKDY  233 (269)
Q Consensus       179 ~-~ltVDHIiP~S~GG~~tweNLV~aC~~CN~~Kg~rtpee~gm~Ll~~P~~P~~~  233 (269)
                      . .+++|||+|++.||.+.|+||+++|..||.+|+++.+.+++|.....|..|...
T Consensus        79 ~~~~~~dHiip~~~g~~~~~~Nl~~lc~~c~~~k~~~~~~~~~~~~~~~~~~~~~~  134 (146)
T COG1403          79 GTDLEVDHIVPLSRGGASAWENLETLCERCHNKKGSRLPGKAGMKLRVKPRKPEVE  134 (146)
T ss_pred             CCCCceeeEeecccCCcchHHHHHHHHHhhcccccccchhhccCcccccccCCchh
Confidence            3 789999999999999999999999999999999999999999999999988743

>PF13395 HNH_4: HNH endonuclease

Probab=99.37  E-value=1.6e-13  Score=98.35  Aligned_cols=45  Identities=49%  Similarity=0.949  Sum_probs=42.0

Q ss_pred             cccCCCC---C-----CCccceeeecCCCCCcchhhHHHhchhhhcCcCCCCH
Q 024302          172 CQYCSSR---E-----NLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTL  216 (269)
Q Consensus       172 C~YCG~~---~-----~ltVDHIiP~S~GG~~tweNLV~aC~~CN~~Kg~rtp  216 (269)
                      |.|||+.   .     ..++|||+|+|.++.+++.|+|++|+.||+.|++++|
T Consensus         1 C~Y~g~~i~~~~l~~~~~~iDHiiP~s~~~~~s~~Nlvl~~~~~N~~K~~k~P   53 (54)
T PF13395_consen    1 CPYCGKPISIENLFKNKYEIDHIIPRSRGGDDSFWNLVLCCKECNRSKGNKTP   53 (54)
T ss_pred             CCCCCCCCChhhcccCCceeEEEecccccCCCCcchhheECHHHhhcccccCC
Confidence            9999987   2     2799999999999999999999999999999999986

>cd00085 HNHc HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins

Probab=99.31  E-value=1.7e-12  Score=89.28  Aligned_cols=52  Identities=42%  Similarity=0.797  Sum_probs=47.5

Q ss_pred             HHHHHHHHCCCccccCCCC---CCCccceeeecCCCCCcchhhHHHhchhhhcCcC
Q 024302          160 SRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKG  212 (269)
Q Consensus       160 ~R~~Vl~RD~~~C~YCG~~---~~ltVDHIiP~S~GG~~tweNLV~aC~~CN~~Kg  212 (269)
                      .|..+++++ ++|+||+..   ..+++|||+|.+.||.++++||+++|..||..|+
T Consensus         3 ~r~~~~~~~-~~C~~c~~~~~~~~~~v~Hi~p~~~~~~~~~~Nl~~~c~~ch~~~~   57 (57)
T cd00085           3 HRLVLLARD-GLCPYCGKPGGTEGLEVDHIIPLSDGGNNDLDNLVLLCRKCHRKKH   57 (57)
T ss_pred             HHHHHHHhC-CcCccCCCcCCCCCceEEeecchhhCCCCchHHhHHHHHHHhhccC
Confidence            678889998 899999974   6789999999999999999999999999999874

The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.

>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family

Probab=99.25  E-value=5.4e-12  Score=131.53  Aligned_cols=62  Identities=32%  Similarity=0.432  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHCCCccccCCCC---C------CCccceeeecCCCCCcchhhHHHhchhhhcCcCCCCHHHh
Q 024302          158 NLSRKNLMYRDNFTCQYCSSR---E------NLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEA  219 (269)
Q Consensus       158 ~~~R~~Vl~RD~~~C~YCG~~---~------~ltVDHIiP~S~GG~~tweNLV~aC~~CN~~Kg~rtpee~  219 (269)
                      ...|..++.+++++|+|||.+   .      .+++|||+|+|.||+|+|+|+|++|..||+.|++++|.++
T Consensus       570 ~~~k~~L~~~q~~~C~Y~g~~i~~~~l~~~~~~~iDHIiP~s~~~dds~~N~vl~~~~~N~~K~~~tp~e~  640 (805)
T TIGR01865       570 NILKLRLYYQQNGKCMYTGKEIDIDDLFDLSYYEIDHILPQSRSFDDSISNKVLVLASENQEKGDQTPYEA  640 (805)
T ss_pred             HHHHHHHHHHcCCcCCCCCCcCccccccCCCCCceeeecccccCCCCcHHHHHHHhHHHHhhccCCCHHHH
Confidence            346788999999999999987   2      4789999999999999999999999999999999999995

CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.

>smart00507 HNHc HNH nucleases

Probab=99.22  E-value=4.3e-12  Score=85.77  Aligned_cols=49  Identities=41%  Similarity=0.788  Sum_probs=45.0

Q ss_pred             HHHHHHHHCCCccccCCCCC--CCccceeeecCCCCCcchhhHHHhchhhhc
Q 024302          160 SRKNLMYRDNFTCQYCSSRE--NLTIDHVVPASRGGEWKWENLVAACFKCNS  209 (269)
Q Consensus       160 ~R~~Vl~RD~~~C~YCG~~~--~ltVDHIiP~S~GG~~tweNLV~aC~~CN~  209 (269)
                      .|..++.|| +.|++||...  .+++|||+|.+.||.++++||+++|..||.
T Consensus         2 ~~~~~~~r~-~~C~~C~~~~~~~~~v~Hi~p~~~~~~~~~~Nl~~~c~~ch~   52 (52)
T smart00507        2 LRRLLLHRD-GVCAYCGKPASEGLEVDHIIPLSDGGNDDLDNLVLLCPKCHI   52 (52)
T ss_pred             HHHHHHHHC-CCCcCCcCCCCCCeEEEecCChhcCCCCChHhCeecChhhCc
Confidence            467899999 9999999874  489999999999999999999999999995

>PF01844 HNH: HNH endonuclease; InterPro: IPR002711 HNH endonuclease is found in bacteria and viruses [, , ]

Probab=99.14  E-value=1.8e-12  Score=88.37  Aligned_cols=43  Identities=42%  Similarity=0.930  Sum_probs=31.6

Q ss_pred             cccCCCC----CCCccceeeecCCCCCcchhhHHHhchhhhcCcCCC
Q 024302          172 CQYCSSR----ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKK  214 (269)
Q Consensus       172 C~YCG~~----~~ltVDHIiP~S~GG~~tweNLV~aC~~CN~~Kg~r  214 (269)
                      |+|||..    ..+++|||+|++.||.++++||+++|..||+.|+++
T Consensus         1 C~~C~~~~~~~~~~~v~Hi~~~~~gg~~~~~Nl~~lC~~Ch~~k~~k   47 (47)
T PF01844_consen    1 CQYCGKPGSDNESLHVHHIIPRSKGGKNDLENLILLCPSCHRKKHDK   47 (47)
T ss_dssp             -TTT--B--GG-GEEEEESS-TTTT---STTTEEEEEHHHHHHHH--
T ss_pred             CCCCCCcCccCcceEeECcCchhcCCCCCHHHHHHHhHHHHHHhcCC
Confidence            8999987    468999999999999999999999999999999764

This family includes pyocins, colicins and anaredoxins.; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity; PDB: 2QGP_C.

>PRK11295 hypothetical protein; Provisional

Probab=98.96  E-value=3.2e-10  Score=93.34  Aligned_cols=61  Identities=20%  Similarity=0.312  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHCCCccccCCCC------CCCccceeeecCCCCCcchhhHHHhchhhhcCcCCCCHHH
Q 024302          158 NLSRKNLMYRDNFTCQYCSSR------ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEE  218 (269)
Q Consensus       158 ~~~R~~Vl~RD~~~C~YCG~~------~~ltVDHIiP~S~GG~~tweNLV~aC~~CN~~Kg~rtpee  218 (269)
                      .-.|+.++.++++.|+.|++.      ..++||||+|...|+.++.+||+++|..||.+|+.+..+.
T Consensus        13 ~~~R~~~L~r~p~lC~~Cgr~~~~a~~~a~vVDHIip~~~gd~~D~sNLQ~LC~~CHn~kh~R~~~~   79 (113)
T PRK11295         13 SGYREKALKLYPWVCGRCSREFVYSNLRELTVHHIDHDHDNNPEDGSNWELLCLYCHDHEHSKYTEA   79 (113)
T ss_pred             HHHHHHHHHHCcchhhhhcChhccCCCCCceeeccCCCCCCCCCchhHHHHHhHHHHhHHHhhHHHh
Confidence            568999999999999999985      3569999999998988889999999999999997665433

>TIGR02646 conserved hypothetical protein TIGR02646

Probab=98.91  E-value=1.1e-09  Score=92.30  Aligned_cols=74  Identities=22%  Similarity=0.377  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHCCCccccCCCC---CCCccceeeecCCCCC--cchhhHHHhchh---------hhcCcCCCCHHHhcccc
Q 024302          158 NLSRKNLMYRDNFTCQYCSSR---ENLTIDHVVPASRGGE--WKWENLVAACFK---------CNSRKGKKTLEEANMQL  223 (269)
Q Consensus       158 ~~~R~~Vl~RD~~~C~YCG~~---~~ltVDHIiP~S~GG~--~tweNLV~aC~~---------CN~~Kg~rtpee~gm~L  223 (269)
                      ..+|..++...+++|+||+..   ..++|||++|++..+.  .+|+||+.+|..         ||..|++..... ...+
T Consensus        13 ~~i~~~L~~~~~~~C~YC~~~~~~~~~~ieH~~Pk~~~~~~~~~~~NL~~sC~~~n~~~~~~~Cn~~K~~~~~~~-~~~~   91 (144)
T TIGR02646        13 DEVHNQLLQLQGGLCAYCEREIELLGSHIEHFRPKGAYPPLTLDWSNLFGSCHRESKQGNPLHCGRFKDNSCGSN-NFDE   91 (144)
T ss_pred             HHHHHHHHHHhCCCcCccCCCcCCCCcceeeecccCCChhhhcChhhchhhccccCCCCCccccccccccccccc-cccc
Confidence            568999999999999999984   5689999999998875  689999999999         888886554322 2344


Q ss_pred             ccCCCCCCc
Q 024302          224 SRVPKAPKD  232 (269)
Q Consensus       224 l~~P~~P~~  232 (269)
                      +..|..+..
T Consensus        92 ~i~P~~~~~  100 (144)
T TIGR02646        92 LIDPLADDC  100 (144)
T ss_pred             ccCCCCCCh
Confidence            556777754

Members of this uncharacterized protein family are found exclusively in bacteria. Neighboring genes in various genomes are also uncharacterized or may annotated as similar to restriction system proteins.

>PF14279 HNH_5: HNH endonuclease

Probab=97.40  E-value=6.4e-05  Score=57.27  Aligned_cols=45  Identities=40%  Similarity=0.826  Sum_probs=37.1

Q ss_pred             cccCCCC---CCCccceeeecCCCCCcchhhHHHhchhhhcCcCCCCHHHh
Q 024302          172 CQYCSSR---ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEA  219 (269)
Q Consensus       172 C~YCG~~---~~ltVDHIiP~S~GG~~tweNLV~aC~~CN~~Kg~rtpee~  219 (269)
                      |.||.+.   ...+.+||+|-|-||...+.|   .|..||+.-|...-.+.
T Consensus         1 Ci~C~~~~~~~~~s~EHIIP~sLGG~~~~~~---vC~~CN~~~g~~vD~~l   48 (71)
T PF14279_consen    1 CIYCNKEKSESNFSEEHIIPESLGGKLKINN---VCDKCNNKFGSKVDAEL   48 (71)
T ss_pred             CccCCCCCCccCCCccccCchhcCCcccccc---hhHHHhHHHhHHHHHHH
Confidence            8999976   345689999999999888877   89999998876654443

>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]

Probab=96.51  E-value=0.0011  Score=69.96  Aligned_cols=60  Identities=32%  Similarity=0.406  Sum_probs=53.3

Q ss_pred             HHHHHHHHCCCccccCCCC------CC---CccceeeecCCCCCcchhhHHHhchhhhcCcCCCCHHHh
Q 024302          160 SRKNLMYRDNFTCQYCSSR------EN---LTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEA  219 (269)
Q Consensus       160 ~R~~Vl~RD~~~C~YCG~~------~~---ltVDHIiP~S~GG~~tweNLV~aC~~CN~~Kg~rtpee~  219 (269)
                      .+-.++.-++++|.|.|..      .+   .+||||+|.|+--+|+.+|.|..-..-|+-|+|.+|.|+
T Consensus       562 lKLrLY~~Q~gkcmYsgqei~I~rL~dk~~~eIDHi~P~Sr~~DDS~~NkVLv~s~~Nq~KgnqtP~e~  630 (1088)
T COG3513         562 LKLRLYYLQNGKCMYSGQEIDIHRLSDKGYYEIDHIVPQSRTWDDSIDNKVLVLSSENQEKGNQTPYEE  630 (1088)
T ss_pred             hHHHHHHHhcCcccccCcccchhhcccccceeeceeccccccccccccceeEEeccccccccCCCCHHH
Confidence            4556778889999999986      23   899999999999999999999999999999999998774

>PHA02565 49 recombination endonuclease VII; Provisional

Probab=95.36  E-value=0.012  Score=51.44  Aligned_cols=55  Identities=18%  Similarity=0.308  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHCCCccccCCCC-----CCCccceeeecCCCCCcchhh-HHHhchhhhcCcCCCC
Q 024302          158 NLSRKNLMYRDNFTCQYCSSR-----ENLTIDHVVPASRGGEWKWEN-LVAACFKCNSRKGKKT  215 (269)
Q Consensus       158 ~~~R~~Vl~RD~~~C~YCG~~-----~~ltVDHIiP~S~GG~~tweN-LV~aC~~CN~~Kg~rt  215 (269)
                      +..++.+++.++++|+.|+.+     ..+++||.-|.+...  + .+ --.+|..||...|.-.
T Consensus         9 ~~~k~~l~e~Q~G~CaiC~~~l~~~~~~~~vDHDH~l~g~~--T-G~VRGLLC~~CN~~lG~~~   69 (157)
T PHA02565          9 KEEKQKLFEAQNGICPLCKRELDGDVSKNHLDHDHELNGPN--A-GRVRGLLCNLCNALEGQMK   69 (157)
T ss_pred             HHHHHHHHHHhCCcCCCCCCccCCCccccccCCCCCCCCcc--c-ccccccCchhhhhhhhhhh
Confidence            567889999999999999975     347899998776311  1 23 3579999999887663

>COG3183 Predicted restriction endonuclease [Defense mechanisms]

Probab=95.35  E-value=0.01  Score=55.69  Aligned_cols=59  Identities=15%  Similarity=0.302  Sum_probs=47.4

Q ss_pred             CHHHHHHHHHHCCCccccCCCC----------CCCccceeeecCCCC----CcchhhHHHhchhhhcCcCCCC
Q 024302          157 NNLSRKNLMYRDNFTCQYCSSR----------ENLTIDHVVPASRGG----EWKWENLVAACFKCNSRKGKKT  215 (269)
Q Consensus       157 ~~~~R~~Vl~RD~~~C~YCG~~----------~~ltVDHIiP~S~GG----~~tweNLV~aC~~CN~~Kg~rt  215 (269)
                      .+..|++.++-.+..|.-|+-.          .-.+|+|++|.+.-+    .+...-|+++|+.||..-+.+.
T Consensus       183 na~~ra~~Ia~~G~vC~vC~fdF~k~YGe~gKgyIeVHH~~piae~e~~~~vnp~tDL~plCpNCH~mvHrr~  255 (272)
T COG3183         183 NATLRAAAIAIHGTVCDVCEFDFQKKYGEIGKGYIEVHHKIPIAEFEGEYHVNPLTDLAPLCPNCHKMVHRRR  255 (272)
T ss_pred             ChHHHHHHHHHhCceeeecCccHHHHhhhhccCeEEEeeccchhhhcCccccCchhhhhhcCccHHHHHhccC
Confidence            4678888888889999999854          358999999998533    3678999999999998655443

>smart00782 PhnA_Zn_Ribbon PhnA Zinc-Ribbon

Probab=95.35  E-value=0.0078  Score=42.70  Aligned_cols=44  Identities=32%  Similarity=0.523  Sum_probs=35.5

Q ss_pred             HHHHCCCccccCCCCCCCccceeeecCCCCCcchhhHHHhchhhhcC
Q 024302          164 LMYRDNFTCQYCSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSR  210 (269)
Q Consensus       164 Vl~RD~~~C~YCG~~~~ltVDHIiP~S~GG~~tweNLV~aC~~CN~~  210 (269)
                      ++.|.+..|..|+....|.+-+|-|.+.|   .-+|-+.+|..|+..
T Consensus         2 L~~Rs~~kCELC~a~~~L~vy~Vpp~~~~---~~d~~iliC~tC~~Q   45 (47)
T smart00782        2 LLARCESKCELCGSDSPLVVYAVPPSSDV---TADNSVMLCDTCHSQ   45 (47)
T ss_pred             hhHHcCCcccCcCCCCCceEEecCCCCCC---CccceeeechHHHHh
Confidence            67899999999998888988887665443   356779999999864

This protein family includes an uncharacterised member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterised phosphonoacetate hydrolase designated PhnA.

>PF05766 NinG: Bacteriophage Lambda NinG protein; InterPro: IPR008713 The ninR region of phage lambda contains two recombination genes, ninB (also known as orf) and ninG (also known as rap)

Probab=94.35  E-value=0.057  Score=48.47  Aligned_cols=58  Identities=19%  Similarity=0.349  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHC-CCccccCCCC--CCCccceeeecCCCC--CcchhhHHHhchhhhcCcCCCC
Q 024302          158 NLSRKNLMYRD-NFTCQYCSSR--ENLTIDHVVPASRGG--EWKWENLVAACFKCNSRKGKKT  215 (269)
Q Consensus       158 ~~~R~~Vl~RD-~~~C~YCG~~--~~ltVDHIiP~S~GG--~~tweNLV~aC~~CN~~Kg~rt  215 (269)
                      ....+.|..|| +..|..||..  ..++.-|...+..-.  ..+.+|+-..|..||..+++..
T Consensus        75 ~afn~~IR~RD~~~~CiSCG~~~~~~~dagHy~s~g~~~~lRF~~~N~~~qC~~CN~~~sgn~  137 (189)
T PF05766_consen   75 KAFNKYIRLRDAGKPCISCGRKHGGQWDAGHYRSRGAAPELRFNEDNIHAQCKHCNRHLSGNI  137 (189)
T ss_pred             HHHHHHHHHHhcCCCcccCCCcCCCCcccccccccccCcccccChhhHhHcCCccccccccCH
Confidence            35667788886 7799999987  568899997653223  3678999999999999997654

These genes are involved in the RecF and RecBCD recombination pathways of Escherichia coli that operate on phage lambda [, ]. NinB and NinG participate in Red recombination, the primary pathway operating when wild-type lambda grows lytically in rec+ cells [].

>COG3440 Predicted restriction endonuclease [Defense mechanisms]

Probab=93.77  E-value=0.027  Score=53.64  Aligned_cols=55  Identities=16%  Similarity=0.253  Sum_probs=46.8

Q ss_pred             CCHHHHHHHHHHCCCccccCCCC-------CCCccceeeecCCCCCcchhhHHHhchhhhcC
Q 024302          156 KNNLSRKNLMYRDNFTCQYCSSR-------ENLTIDHVVPASRGGEWKWENLVAACFKCNSR  210 (269)
Q Consensus       156 ~~~~~R~~Vl~RD~~~C~YCG~~-------~~ltVDHIiP~S~GG~~tweNLV~aC~~CN~~  210 (269)
                      +....|+.|+.--+++|+.||..       .....-||.|.+++|.+...|-.++|+..|-.
T Consensus       179 rd~~fRk~V~~~Y~~RCalCG~e~~~~~~q~ii~~ahikp~~q~y~~~i~N~LaLC~nHh~~  240 (301)
T COG3440         179 RDGAFRKIVLRQYDYRCALCGLEVLDFLEQNIIKAAHIKPFQQFYPDRIINGLALCKNHHWA  240 (301)
T ss_pred             hhHHHHHHHHHHhcchhhhhcchhhhhhHHHHhhhhhcCcccccCcccccccchhchhhHHH
Confidence            34789999999999999999943       33566799999999999999999999877763

>PF13391 HNH_2: HNH endonuclease

Probab=93.72  E-value=0.013  Score=42.03  Aligned_cols=39  Identities=23%  Similarity=0.135  Sum_probs=31.8

Q ss_pred             cccCCCCC-----CCccceeeecCCC--CCc-----------chhhHHHhchhhhcC
Q 024302          172 CQYCSSRE-----NLTIDHVVPASRG--GEW-----------KWENLVAACFKCNSR  210 (269)
Q Consensus       172 C~YCG~~~-----~ltVDHIiP~S~G--G~~-----------tweNLV~aC~~CN~~  210 (269)
                      |..||...     .+++-||+|.+.+  +.+           +.+|..++|..+|..
T Consensus         1 C~itg~~~~~~~~~~eaaHI~P~s~~~~~~~~~~~~~~~~~~~~~Ngl~L~~~lH~~   57 (66)
T PF13391_consen    1 CVITGIRDPSPWELLEAAHIVPFSLGSWWMNNWFGEYANDWISPSNGLLLRPDLHKL   57 (66)
T ss_pred             CcCCcCCcCCCCCcEEEEEcccCccCCCchhhhhhhhhccCCCccEEEEcCHhHHHH
Confidence            77787655     6899999999987  444           788999999999864

>TIGR02986 restrict_Alw26I type II restriction endonuclease, Alw26I/Eco31I/Esp3I family

Probab=93.38  E-value=0.036  Score=54.67  Aligned_cols=49  Identities=24%  Similarity=0.378  Sum_probs=39.3

Q ss_pred             CccccCCCC-CCCccceeeecCCCCCcchhhHHHhchhhhcCcCCCCHHHh
Q 024302          170 FTCQYCSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEA  219 (269)
Q Consensus       170 ~~C~YCG~~-~~ltVDHIiP~S~GG~~tweNLV~aC~~CN~~Kg~rtpee~  219 (269)
                      ..|+-|+.. ..+..|||-|.|.|=.+... .+++|..||+.|.+|.--..
T Consensus       245 ~~~~~~~~~p~~~saDHIGPISlGF~h~P~-Fqplc~~cNSaKnnR~~lsD  294 (424)
T TIGR02986       245 CSIPECCKHPEKISADHIGPISLGFVHDPR-FQPLCSSCNSAKNDRLTLSD  294 (424)
T ss_pred             ccCcccccCCCCCCccccCCcccccccCcc-ccccccccccccccceeHHH
Confidence            356677765 67899999999999777664 49999999999999874443

Members of this family are type II restriction endonucleases of the Alw26I/Eco31I/Esp3I family. Characterized specificities of three members are GGTCTC, CGTCTC, and the shared subsequence GTCTC.

>PF06147 DUF968: Protein of unknown function (DUF968); InterPro: IPR010373 This is a family of uncharacterised prophage proteins that are also found in bacteria and humans

Probab=91.25  E-value=0.2  Score=44.95  Aligned_cols=51  Identities=14%  Similarity=0.271  Sum_probs=37.2

Q ss_pred             CCCccccCCCCCCCccceeeecCCCC---CcchhhHHHhchhhhcCcCCCCHHHhc
Q 024302          168 DNFTCQYCSSRENLTIDHVVPASRGG---EWKWENLVAACFKCNSRKGKKTLEEAN  220 (269)
Q Consensus       168 D~~~C~YCG~~~~ltVDHIiP~S~GG---~~tweNLV~aC~~CN~~Kg~rtpee~g  220 (269)
                      -...|..||+.. -.++|++..-+||   ...-..++++|+.||+...+ -...+.
T Consensus       126 ~~~~C~iCGk~~-~d~hH~iG~g~~~~~~~~~d~~~ipLCr~hH~e~H~-g~~~Fe  179 (200)
T PF06147_consen  126 KSRPCVICGKPP-ADIHHIIGMGRGRMGIKHHDLFVIPLCREHHRELHR-GRKAFE  179 (200)
T ss_pred             ccCccccCCCCc-cccceeeccccCccccccCCCeehhccHHHHHHHhC-CHHHHH
Confidence            345899999763 4889997665554   34557899999999998877 555443

>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family

Probab=90.27  E-value=0.14  Score=53.25  Aligned_cols=38  Identities=24%  Similarity=0.269  Sum_probs=28.0

Q ss_pred             HHHHCCCccccCCCC--CCCccceeeecCCCCC------cchhhHH
Q 024302          164 LMYRDNFTCQYCSSR--ENLTIDHVVPASRGGE------WKWENLV  201 (269)
Q Consensus       164 Vl~RD~~~C~YCG~~--~~ltVDHIiP~S~GG~------~tweNLV  201 (269)
                      |..-..+.|+|||..  ..-++|||+|+|.-+.      ++..||+
T Consensus       755 Ik~fs~gIcpY~Ga~iG~~gEiDHI~PRSht~k~ygtvFN~E~NLI  800 (802)
T TIGR03031       755 IKNFSMGICPYKGASIGGQGEIDHIYPRSHSKKHYGTIFNSEVNLI  800 (802)
T ss_pred             HHHHhccCCCCCCCCCCCcccccccccccccccccceeecCcccee
Confidence            444456899999987  5679999999998654      4455654

Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to PFAM model pfam01844, HNH endonuclease.

>PF09665 RE_Alw26IDE: Type II restriction endonuclease (RE_Alw26IDE); InterPro: IPR014328 There are four classes of restriction endonucleases: types I, II,III and IV

Probab=88.57  E-value=0.15  Score=51.44  Aligned_cols=49  Identities=29%  Similarity=0.419  Sum_probs=37.1

Q ss_pred             CCCC-CCCccceeeecCCCCCcchhhHHHhchhhhcCcCCCCHHHhccccc
Q 024302          175 CSSR-ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEEANMQLS  224 (269)
Q Consensus       175 CG~~-~~ltVDHIiP~S~GG~~tweNLV~aC~~CN~~Kg~rtpee~gm~Ll  224 (269)
                      |+.. .-+..|||-|.|.|=.+... .+++|..||+.|.+|.--..-..|+
T Consensus       250 ~~~~~~~~SaDHIGPISlGF~h~P~-Fqplc~~cNSaKnnR~~lsDV~~Li  299 (511)
T PF09665_consen  250 CGKEEECLSADHIGPISLGFVHRPR-FQPLCKSCNSAKNNRMYLSDVKKLI  299 (511)
T ss_pred             hhhhccccCccccCCcccccccCcc-ccccccccccccccceeHHHHHHHH
Confidence            5544 55799999999999877664 4999999999999987544333333

All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction endonucleases of the Alw26I/Eco31I/Esp3I family [], whose recognition sequences are 5'-GTCTC-3' (Alw26I), 5'-GGTCTC-3' (Eco31I) and 5'-CGTCTC-3' (Esp3I).

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
4h9d_A	112	Crystal Structure Of Mn-Dependent Gme Hnh Nicking E		3e-05

>pdb|4H9D|A Chain A, Crystal Structure Of Mn-Dependent Gme Hnh Nicking Endonuclease From Geobacter Metallireducens Gs-15, Northeast Structural Genomics Consortium (Nesg) Target Gmr87 Length = 112

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 148 QVVKRRRIKNNLSRKNLMYRDNFT---CQYCSS---RENLTIDHVVPASRGGEWKWENLV 201
           Q VKR + K    R++  +++      C YC      E LT DH+VP  RGG+    N+V
Sbjct: 11  QEVKREKEKARELRRSQWWKNRIARGICHYCGEIFPPEELTXDHLVPVVRGGKSTRGNVV 70
Query: 202 AACFKCNSRKGKKTLEEANMQLSRVPKAPKDYDIL 236
            AC +CN+RK      E    L  +   P D + L
Sbjct: 71  PACKECNNRKKYLLPVEWEEYLDSLESEPSDGEGL 105

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
2qgp_A	112	HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, stru	3e-37
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 5e-07
 Identities = 33/199 (16%), Positives = 69/199 (34%), Gaps = 45/199 (22%)

Query: 5   TSQGGLNLLFNGDGSSFGVEPRD-PFQYKLGSGLR-SI--EVHKRKLIRPRNGVWSSMNK 60
           T     +LL           P+D P +    +  R SI  E  +  L    N  W  +N 
Sbjct: 299 TPDEVKSLL----LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN--WKHVNC 352

Query: 61  KKSSKFSVDASLNVSGKGISGESEEYDSDEEFDELACFRGLVLDISYRPVNVVC--W--- 115
            K +   +++SLNV         E  +  + FD L+ F      I   P  ++   W   
Sbjct: 353 DKLTT-IIESSLNVL--------EPAEYRKMFDRLSVFPPSA-HI---PTILLSLIWFDV 399

Query: 116 KRAICLEFMEKTIN-------SPNGSFYIPAVLRVRHLLQVVKRRRIKNNLS-RKNLMYR 167
            ++  +  + K              +  I         + +  + +++N  +  ++++  
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISI-------PSIYLELKVKLENEYALHRSIVDH 452

Query: 168 DNFTCQYCSSRENLTIDHV 186
            N    + S  ++L   ++
Sbjct: 453 YNIPKTFDS--DDLIPPYL 469

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 37/275 (13%), Positives = 88/275 (32%), Gaps = 52/275 (18%)

Query: 19  SSFGVEPRDPFQYKLGSGLRSIEVHKRKLIRPRNGVWSSMN----------KKKSSKFSV 68
           S    E R P      S +  + + +R  +   N V++  N          ++   +   
Sbjct: 96  SPIKTEQRQP------SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 69  DASLNVSGKGISGES---EEYDSDEEFDELACFRGLVLDISY--RPVNVVCWKRAICLEF 123
             ++ + G   SG++    +     +      F+   L++     P  V+   + +  + 
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209

Query: 124 MEKTINSPNGSFYIPAVL-----RVRHLLQVVKRRRIKNNLSRKNLMYRD---------- 168
                +  + S  I   +      +R LL   K +  +N L    L+  +          
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLL---KSKPYENCL----LVLLNVQNAKAWNAF 262

Query: 169 NFTCQY-CSSRENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLEE-ANMQLSRV 226
           N +C+   ++R     D +  A+        +L          + K  L +  + +   +
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATT----THISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 227 PKAPKDYDILAIPLTSAAIRMLRVRKGTPVEWRQY 261
           P+     +   + + +     +R    T   W+  
Sbjct: 319 PREVLTTNPRRLSIIAE---SIRDGLATWDNWKHV 350

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
2qgp_A	112	HNH endonuclease; Q39X46, GMR87, X-RAY, NESG, stru	99.5
3m7k_A	142	Restriction endonuclease PACI; HNH restriction end	94.7
1e7l_A	157	GP49, recombination endonuclease VII; resolvase, h	94.66

>3m7k_A Restriction endonuclease PACI; HNH restriction endonuclease, beta-BETA-alpha-metal active S base-PAIR RARE cutter; HET: DNA; 1.92A {Pseudomonas alcaligenes} PDB: 3ldy_A*

Probab=94.70  E-value=0.0049  Score=51.44  Aligned_cols=48  Identities=25%  Similarity=0.387  Sum_probs=34.2

Q ss_pred             HCCCccccCCCC-----------------CCCccceeeecCCCCCcchhhHHHhchhhhcCcCCCCHH
Q 024302          167 RDNFTCQYCSSR-----------------ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGKKTLE  217 (269)
Q Consensus       167 RD~~~C~YCG~~-----------------~~ltVDHIiP~S~GG~~tweNLV~aC~~CN~~Kg~rtpe  217 (269)
                      +....|-|||..                 ..|+||...|   .-..+.+||+.||..||+.|++.+-.
T Consensus        58 ~q~k~C~YCgite~~~k~L~k~k~Rg~~~~~LeIeR~~~---~~~Ys~dNLaLAC~~CNnaKsdk~ta  122 (142)
T 3m7k_A           58 SAQRHCGYCGISEAGFTSLHRTNPRGYHIQCLGVDRSDS---FEGYSPQNARLACFICNRIKSNIFSA  122 (142)
T ss_dssp             GGGCBCTTTCCBHHHHHTTTCBCTTSCBCCSCEEEESST---TSCBCTTTEEEECHHHHHHHTTTSCH
T ss_pred             CCCCceeeecccHHHHHHHhhccCCCccccceEEeccCC---ccccCHHHHHHHHHHHhccccccccc
Confidence            566789999965                 1145554221   12256899999999999999998754

>1e7l_A GP49, recombination endonuclease VII; resolvase, holliday junction, DNAse; HET: SO4; 1.32A {Bacteriophage T4} SCOP: a.140.4.1 d.4.1.5 PDB: 2qnc_A* 1en7_A 1e7d_A 2qnf_A*

Probab=94.66  E-value=0.006  Score=52.02  Aligned_cols=54  Identities=17%  Similarity=0.348  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHCCCccccCCCC-----CCCccceeeecCCCCCcchhhHH-HhchhhhcCcCCC
Q 024302          158 NLSRKNLMYRDNFTCQYCSSR-----ENLTIDHVVPASRGGEWKWENLV-AACFKCNSRKGKK  214 (269)
Q Consensus       158 ~~~R~~Vl~RD~~~C~YCG~~-----~~ltVDHIiP~S~GG~~tweNLV-~aC~~CN~~Kg~r  214 (269)
                      +..+..+++.++++|+.|+.+     ..+++||--+..  |..+ .++. .+|..||...|..
T Consensus         9 ~~~~~~l~~~Q~g~C~IC~~~l~~~~~~~~vDHdH~~~--g~~t-G~VRGlLC~~CN~~lG~~   68 (157)
T 1e7l_A            9 KEEKQKFYDAQNGKCLICQRELNPDVQANHLDHDHELN--GPKA-GKVRGLLCNLCDAAEGQM   68 (157)
T ss_dssp             HHHHHHHHHHTTTBCTTTCCBCCSSGGGSEEEECCCCS--STTT-TBEEEEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCcCcccCCccccccccccccCCCCCC--CCCC-CcchhhccHhHhchhccc
Confidence            567889999999999999985     457899988665  2221 3555 7999999985443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1e7la2	103	Recombination endonuclease VII, N-terminal domain	82.8

>d1e7la2 d.4.1.5 (A:1-103) Recombination endonuclease VII, N-terminal domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a+b)
fold: His-Me finger endonucleases
superfamily: His-Me finger endonucleases
family: Recombination endonuclease VII, N-terminal domain
domain: Recombination endonuclease VII, N-terminal domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=82.80  E-value=0.35  Score=36.48  Aligned_cols=54  Identities=17%  Similarity=0.267  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHCCCccccCCCC-----CCCccceeeecCCCCCcchhhHHHhchhhhcCcCC
Q 024302          158 NLSRKNLMYRDNFTCQYCSSR-----ENLTIDHVVPASRGGEWKWENLVAACFKCNSRKGK  213 (269)
Q Consensus       158 ~~~R~~Vl~RD~~~C~YCG~~-----~~ltVDHIiP~S~GG~~tweNLV~aC~~CN~~Kg~  213 (269)
                      +..++++++.++++|+.|+.+     ..+.|||---....+....  =-.+|..||..-|-
T Consensus         9 ~ee~~~l~~~Q~g~C~IC~~~~~~~~~~~~vDHdH~~~~~~TG~V--RGlLC~~CN~~lG~   67 (103)
T d1e7la2           9 KEEKQKFYDAQNGKCLICQRELNPDVQANHLDHDHELNGPKAGKV--RGLLCNLCDAAEGQ   67 (103)
T ss_dssp             HHHHHHHHHHTTTBCTTTCCBCCSSGGGSEEEECCCCSSTTTTBE--EEEECHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCcCCCCCCCcccccccceeeccccccCCCCCce--eeecchHHhHhhcc
Confidence            567888999999999999976     3478888643111000011  12689999986543