Citrus Sinensis ID: 024303

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MATRSSISLSLSFFLAFLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLVNYNV
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEcccccccccccccccccccccccccccEEEEEcccccccccccccEEEEEEccccccccccEEEEEEEcccccccccccccccccHHHHHHccccccHHHHccccEEEEEEEEEEEccccccEEEEEEEcccccEEEEEEEEEcccccEEEEEEEcccccEEEcccccccEEEEcccccccccEEEEEEEEcccEEEEEccccccccccccEEEccccEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccHHHccccccccEEEEEEccccccccccEEEEEEccccccccccccccccccHHHHHHHHcccccHHHHHcccEEEEEEEEcccccccEEEEEEcccccccEEEEEEEEccccccEEEEEEEccccccEEccccccHccHccccccccccEEEEEEEcccccEEEEccccccccccccEEEEEEEEEc
Coil and Loop (DISEMBL)
MATRSSISLSLSFFLAFLCYLELcscfypkhlnlsavgthwstagatwygspdgagsdggacgygnavsqspfssfvtaigpslyksgkecgacyqvkctrhpacsgkaVRVVItdfcpggpcvsesahfdlsgtafgamaipgqeeklrdAGVLEVRYARVAcdysgrniafhvdqgsnpnYLAVVVEFedgdgdlagvdvkegSGEWRAMQQSWGAtwklnagselhpplslrltsqysgqtlvannvipqgwmpgatyRSLVNYNV
Flexible Loop (DISEMBL)
matrssislSLSFFLAFLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLVNYNV
Low Complexity Region (SEG)
MATRssislslsfflaflcylELCSCFYPKHLNLSAVGTHWSTAGATWygspdgagsdggacgygNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLVNYNV
Disordered region (IsUnstruct)
*******SLSLSFFLAFLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLVN***
Disordered Region (DISOPRED)
************FFLAFLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLVNYN*
Disordered Region (DISEMBL)
MATRSSISLSLSFFLAFLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLVNYNV
Disordered Region (DISPRO)
**TRSSISLSLSFFLAFLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLVNYNV
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATRSSISLSLSFFLAFLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLVNYNV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q7XT40	264	Expansin-B15 OS=Oryza sat	yes	no	0.973	0.992	0.587	1e-82
Q9SHY6	273	Putative expansin-B2 OS=A	yes	no	0.907	0.893	0.589	1e-81
Q5W6Z9	264	Expansin-B18 OS=Oryza sat	yes	no	0.973	0.992	0.576	2e-81
Q7XT39	275	Expansin-B5 OS=Oryza sati	no	no	0.847	0.829	0.628	5e-80
Q6H677	273	Putative expansin-B14 OS=	no	no	0.977	0.963	0.567	5e-79
Q6H676	292	Expansin-B11 OS=Oryza sat	no	no	0.858	0.791	0.628	3e-75
Q9SHD1	259	Expansin-B4 OS=Arabidopsi	no	no	0.936	0.972	0.509	4e-72
Q10G40	313	Expansin-B12 OS=Oryza sat	no	no	0.959	0.824	0.521	3e-71
Q9M203	264	Expansin-B5 OS=Arabidopsi	no	no	0.847	0.863	0.493	2e-64
Q336T5	268	Expansin-B3 OS=Oryza sati	no	no	0.825	0.828	0.508	2e-63

>sp|Q7XT40|EXB15_ORYSJ Expansin-B15 OS=Oryza sativa subsp. japonica GN=EXPB15 PE=3 SV=2

 Score =  306 bits (784), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 158/269 (58%), Positives = 194/269 (72%), Gaps = 7/269 (2%)

Query: 1   MATRSSISLSLSFFLAFLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGG 60
           MA+R  + LS    +A +  L         H  LS+    WS  GATWYG+ +GAGSDGG
Sbjct: 1   MASRFQLILSTFVVIAAVTMLPRPCASIEFHRKLSS----WSNGGATWYGAANGAGSDGG 56

Query: 61  ACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPG 120
           ACGY  AV Q+PFSS + A  PS+YKSG  CG+CYQVKCT + ACSG  V VV+TD CPG
Sbjct: 57  ACGYQGAVFQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCTGNSACSGNPVTVVLTDECPG 116

Query: 121 GPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSN 180
           GPC+SE  HFDLSGTAFGAMA PGQ ++LR AGVL+++Y RV C++ G  + F VD GSN
Sbjct: 117 GPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNWGGVKLTFVVDVGSN 176

Query: 181 PNYLAVVVEFEDGDGDLAGVDVKE-GSG-EWRAMQQSWGATWKLNAGSELHPPLSLRLTS 238
           PNY AV+V++E+GDGDL+GV++ + G+G  W  MQQSWGA WKLNAGS L  P S+RLTS
Sbjct: 177 PNYFAVLVKYENGDGDLSGVELMQTGAGAAWTQMQQSWGAVWKLNAGSALQAPFSIRLTS 236

Query: 239 QYSGQTLVANNVIPQGWMPGATYRSLVNY 267
             SG+TLVA+NVIP GW PG +Y S VN+
Sbjct: 237 S-SGKTLVASNVIPSGWKPGMSYISTVNF 264

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SHY6|EXPB2_ARATH Putative expansin-B2 OS=Arabidopsis thaliana GN=EXPB2 PE=3 SV=2

 Score =  302 bits (774), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 148/251 (58%), Positives = 182/251 (72%), Gaps = 7/251 (2%)

Query: 22  ELCSCFYPKHLNLSAVGT---HWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVT 78
            L  CF PK  N+SA  T    WS AG+TWYG+P G GSDGGACGYGNAV+Q PFS  V+
Sbjct: 25  NLTHCFSPKKFNISAATTSDSDWSIAGSTWYGNPTGYGSDGGACGYGNAVAQPPFSKMVS 84

Query: 79  AIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFG 138
           A GPSL+KSGK CGACYQVKCT   ACS   V VVITD CPG  CV ES HFDLSGTAFG
Sbjct: 85  AGGPSLFKSGKGCGACYQVKCTSKSACSKNPVTVVITDECPG--CVKESVHFDLSGTAFG 142

Query: 139 AMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLA 198
           AMAI GQ+ +LR+ G L++ Y +V C+Y G+ + F VD+GSN N  AV+V + +GDG++ 
Sbjct: 143 AMAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIG 202

Query: 199 GVDVKEG--SGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWM 256
            +++K+   S +W +M QSWGA WKL+  S L  PLSLR+TS  SG+T+VA+NVIP  W 
Sbjct: 203 RIELKQALDSDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTSLESGKTVVASNVIPANWQ 262

Query: 257 PGATYRSLVNY 267
           PGA Y+S VN+
Sbjct: 263 PGAIYKSNVNF 273

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5W6Z9|EXB18_ORYSJ Expansin-B18 OS=Oryza sativa subsp. japonica GN=EXPB18 PE=2 SV=1

 Score =  302 bits (773), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 155/269 (57%), Positives = 194/269 (72%), Gaps = 7/269 (2%)

Query: 1   MATRSSISLSLSFFLAFLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGG 60
           M ++  + LS    +A    L         H  LS+    WS  GATWYG+ +GAGSDGG
Sbjct: 1   MNSKFQLILSTFVVIAAFTLLPRPCASIEFHRKLSS----WSNGGATWYGAANGAGSDGG 56

Query: 61  ACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPG 120
           ACGY  AV Q+PFSS + A  PS+YKSG  CG+CYQVKC+ + ACSG  V VV+TD CPG
Sbjct: 57  ACGYQAAVDQAPFSSMIAAGSPSIYKSGLGCGSCYQVKCSGNSACSGNPVTVVLTDECPG 116

Query: 121 GPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSN 180
           GPC+SE  HFDLSGTAFGAMA PGQ ++LR AGVL+++Y RV C++ G  + F VD GSN
Sbjct: 117 GPCLSEPVHFDLSGTAFGAMANPGQADQLRAAGVLQIQYNRVPCNWGGVMLTFAVDAGSN 176

Query: 181 PNYLAVVVEFEDGDGDLAGVDVKE-GSG-EWRAMQQSWGATWKLNAGSELHPPLSLRLTS 238
           P+Y AV+V++E+GDGDL+G+D+ + G+G  W  MQQSWGA WKL+AG+ L  PLS+RLTS
Sbjct: 177 PSYFAVLVKYENGDGDLSGMDLMQTGAGAAWTPMQQSWGAVWKLSAGAALQAPLSIRLTS 236

Query: 239 QYSGQTLVANNVIPQGWMPGATYRSLVNY 267
             SG+TLVA+NVIP GW PGA+Y S VNY
Sbjct: 237 S-SGKTLVASNVIPSGWKPGASYTSTVNY 264

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XT39|EXPB5_ORYSJ Expansin-B5 OS=Oryza sativa subsp. japonica GN=EXPB5 PE=2 SV=2

 Score =  297 bits (761), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 147/234 (62%), Positives = 180/234 (76%), Gaps = 6/234 (2%)

Query: 38  GTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQV 97
           G  WS+ GATWYG P G GS+GGACGY +AV Q PFSS + A GPSL+K+GK CG+CYQ+
Sbjct: 42  GYGWSSGGATWYGGPQGDGSEGGACGYQSAVGQRPFSSMIAAGGPSLFKNGKGCGSCYQI 101

Query: 98  KCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEV 157
           KCT + ACSG+ V VVITD CPGG C++E+AHFD+SGTAFGAMA  G  ++LR AGVL++
Sbjct: 102 KCTGNRACSGRPVTVVITDSCPGGVCLNEAAHFDMSGTAFGAMANRGMGDRLRSAGVLKI 161

Query: 158 RYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKE--GSGEWRAMQQS 215
           +Y RV C ++  N+AF VD GSNP YLA++V++ +GDGDLA V + E  G G W+AMQQS
Sbjct: 162 QYKRVPCRFA-MNVAFKVDAGSNPYYLAILVQYANGDGDLAAVHIMEARGGGGWKAMQQS 220

Query: 216 WGATWKLNA--GSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLVNY 267
           WGATW+LN+  G  L PP S+RLTS  SG+ LVANNVIP GW  G TYRS VNY
Sbjct: 221 WGATWRLNSNTGKPLSPPFSIRLTSG-SGKVLVANNVIPSGWQAGLTYRSTVNY 273

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6H677|EXB14_ORYSJ Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1

 Score =  294 bits (752), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 156/275 (56%), Positives = 192/275 (69%), Gaps = 12/275 (4%)

Query: 1   MATRSSISLSLSFFLAFLC-YLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDG 59
           MA  + +  S+  F+A  C  L         H  LS     WS  GATWYG  +G+G+DG
Sbjct: 1   MALAAKLLPSIVAFVALACCVLRSSVASVDHHRKLSG----WSIGGATWYGPANGSGTDG 56

Query: 60  GACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCP 119
           GACGY   V Q PF+S + A  PS+Y+SGK CG+CYQVKC+ +P+CSGK V VV+TD CP
Sbjct: 57  GACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPSCSGKPVTVVLTDLCP 116

Query: 120 GGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGS 179
           GG C+ E  HFDLSGTAFGAMA PGQ+++LR+AG L V+YARV C + G +IAF VD GS
Sbjct: 117 GGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGS 176

Query: 180 NPNYLAVVVEFEDGDGDLAGVDVKE-----GSGEWRAMQQSWGATWKLNAG-SELHPPLS 233
           N  YLAV+VE EDGDGDL+ VD+ +     G G W AMQQSWGA WK N+G + L  P+S
Sbjct: 177 NQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWKYNSGPAPLQAPMS 236

Query: 234 LRLTSQYSGQTLVANNVIPQGWMPGATYRSLVNYN 268
           +RLTS  SG+TLVA+NVIP GW PG TYRS+VN+ 
Sbjct: 237 IRLTSG-SGRTLVASNVIPAGWQPGGTYRSIVNFR 270

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6H676|EXB11_ORYSJ Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1

 Score =  281 bits (719), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 147/234 (62%), Positives = 173/234 (73%), Gaps = 3/234 (1%)

Query: 37  VGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQ 96
           V T W+ AGAT+YG+P+G GSDGGACGY  AV Q PFSS + A  PSLYK GK CGACY+
Sbjct: 60  VTTGWAAAGATYYGAPNGDGSDGGACGYQTAVGQRPFSSMIAAGSPSLYKGGKGCGACYE 119

Query: 97  VKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLE 156
           VKCT + ACSG+   VVITD CPGG C++ +AHFD+SGT+ GAMA PG  +KLR AG+L+
Sbjct: 120 VKCTTNAACSGQPATVVITDECPGGICLAGAAHFDMSGTSMGAMAKPGMADKLRAAGILQ 179

Query: 157 VRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSW 216
           V+Y RV C YSG NIAF VDQG+NP Y  V++EFEDGDGDL  VD+ E    W  M Q+W
Sbjct: 180 VQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGWTPMVQNW 239

Query: 217 GATWKLNA--GSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLVNYN 268
           GA W+ N+  G  L  P SLRLTS  SG+ LVANNVIP  W PG TYRSLVNY+
Sbjct: 240 GALWRYNSNTGKALKAPFSLRLTSD-SGKVLVANNVIPASWKPGVTYRSLVNYS 292

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SHD1|EXPB4_ARATH Expansin-B4 OS=Arabidopsis thaliana GN=EXPB4 PE=2 SV=1

 Score =  271 bits (693), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 131/257 (50%), Positives = 170/257 (66%), Gaps = 5/257 (1%)

Query: 11  LSFFLAFLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQ 70
            +    F   L+ C C   ++  +   G+   TAG TWYG P GAGS GGACGYG+AV+ 
Sbjct: 8   FALLALFAVSLKFCYC---QNETIDVAGS--GTAGVTWYGEPFGAGSTGGACGYGSAVAN 62

Query: 71  SPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHF 130
            P  + V+A GPSL+ +GK CG CYQV C  HPACSG  + V ITD CPGGPC SE  H 
Sbjct: 63  PPLYAMVSAGGPSLFNNGKGCGTCYQVVCIGHPACSGSPITVTITDECPGGPCASEPVHI 122

Query: 131 DLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEF 190
           DLSG A GA+A PGQ ++LR AGV+ V Y R AC Y G NI F +D G+NP Y++ VVE+
Sbjct: 123 DLSGKAMGALAKPGQADQLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVVEY 182

Query: 191 EDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNV 250
           E+GDGDL+ V+++   G + +MQ+   A WK+N+GS L  P ++RLTS  S + +VA NV
Sbjct: 183 ENGDGDLSNVEIQPAGGSFISMQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVIVAYNV 242

Query: 251 IPQGWMPGATYRSLVNY 267
           IP  W P  +YRS+VN+
Sbjct: 243 IPANWKPDESYRSIVNF 259

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.

Arabidopsis thaliana (taxid: 3702)

>sp|Q10G40|EXB12_ORYSJ Expansin-B12 OS=Oryza sativa subsp. japonica GN=EXPB12 PE=2 SV=2

 Score =  268 bits (685), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 144/276 (52%), Positives = 179/276 (64%), Gaps = 18/276 (6%)

Query: 1   MATRSSISLSLSFFLAFLCYLELCSCFYP-KHLNLSAVGTHWSTAGATWYGSPDGAGSDG 59
           MA      L L +F+A      L S F P   + L    + WS   ATWYG P+GAGS+G
Sbjct: 1   MAAFEPHRLQLLYFIAITV---LASVFQPCTSIELHRELSGWSNGIATWYGDPNGAGSEG 57

Query: 60  GACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCP 119
           GACGY  AV Q PFSS + A  P +Y SGK CG+CY+V C  + ACSG  V VVITD  P
Sbjct: 58  GACGYQYAVDQPPFSSRIAAGSPYIYDSGKGCGSCYRVVCAGNEACSGIPVTVVITDQGP 117

Query: 120 GGPCV---------SESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRN 170
           GGPC+         +E+AHFD+SGTAFGAMA PGQ ++LR AG+L+++Y RV C+++G  
Sbjct: 118 GGPCLEELVDGQCMNEAAHFDMSGTAFGAMARPGQADQLRGAGLLQIQYTRVECEWTGVG 177

Query: 171 IAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKE----GSGEWRAMQQSWGATWKLNAGS 226
           + F VD GSNPNYLA++VE++D D DLA VD+       SG W  MQQSWGA W+LN+GS
Sbjct: 178 LTFVVDSGSNPNYLALLVEYDDNDSDLAAVDIMPIGAGASGSWIPMQQSWGAVWRLNSGS 237

Query: 227 ELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYR 262
            L  P S+RLT   SGQ  VA+N IP GW PG  Y+
Sbjct: 238 ALQGPFSVRLTFS-SGQMFVASNAIPAGWNPGMAYQ 272

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M203|EXPB5_ARATH Expansin-B5 OS=Arabidopsis thaliana GN=EXPB5 PE=2 SV=2

 Score =  245 bits (626), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 114/231 (49%), Positives = 159/231 (68%), Gaps = 3/231 (1%)

Query: 39  THWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVK 98
           THW+TAG TWYG  +G G+ GGACGYG+AV++ P+   V+A GPSL+K GK CGACY++K
Sbjct: 32  THWNTAGITWYGDREGPGTTGGACGYGDAVAKHPYRCMVSAGGPSLFKDGKGCGACYRLK 91

Query: 99  CTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVR 158
           C  HP C+ K ++V+I+D CPG  C  ES HFDLSG AFGA+A  G+ ++LR+ G L+V 
Sbjct: 92  CD-HPLCTKKPIKVMISDECPG--CTKESVHFDLSGKAFGALAKRGKGDQLRNLGELKVS 148

Query: 159 YARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGA 218
           Y R  C +    IA HVD G+NP Y++  V+F +GDG+ A ++V+   G++  M++   A
Sbjct: 149 YKRACCKHPKTMIAIHVDAGANPYYMSFAVKFANGDGNFACIEVQPAGGQYMKMEEMRSA 208

Query: 219 TWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLVNYNV 269
            W+L+ G  L  P ++RLTS  SG+ ++A  VIP+ W PGA Y S VN+ V
Sbjct: 209 VWRLSPGVPLKGPFNIRLTSAVSGKKIIAKGVIPEKWSPGAIYHSKVNFPV 259

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.

Arabidopsis thaliana (taxid: 3702)

>sp|Q336T5|EXPB3_ORYSJ Expansin-B3 OS=Oryza sativa subsp. japonica GN=EXPB3 PE=2 SV=2

 Score =  242 bits (617), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/234 (50%), Positives = 163/234 (69%), Gaps = 12/234 (5%)

Query: 40  HWSTAGATWYGSPDGAG--SDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQV 97
           +W  A ATWYG+P GAG   DGGACG+ N  +Q PFSS  +     ++K GK CG+CYQ+
Sbjct: 41  NWEVARATWYGAPTGAGPDDDGGACGFKN-TNQYPFSSMTSCGNEPIFKDGKGCGSCYQI 99

Query: 98  KCTRHPACSGKAVRVVITD--FCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVL 155
           +C  HPACSG    V+ITD  + P    VS+  HFDLSGTAFGAMA PGQ ++LR AG++
Sbjct: 100 RCVNHPACSGNPETVIITDMNYYP----VSK-YHFDLSGTAFGAMAKPGQNDQLRHAGII 154

Query: 156 EVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGE-WRAMQQ 214
           ++++ RV C++ G  + FHV++GSNP Y AV+VE+EDGDGD+  VD+ E + + W  M++
Sbjct: 155 DIQFKRVPCNFPGLKVTFHVEEGSNPVYFAVLVEYEDGDGDVVQVDLMEANSQSWTPMRE 214

Query: 215 SWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLVNYN 268
           SWG+ W+L++   L  P SLR+T++ SG+ LVA+ VIP  W P A YRS V Y+
Sbjct: 215 SWGSIWRLDSNHRLTAPFSLRITNE-SGKQLVASQVIPANWAPMAVYRSFVQYS 267

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
225443047	279	PREDICTED: putative expansin-B2 [Vitis v	0.936	0.903	0.785	1e-117
83778375	279	beta expansin 2 precursor [Solanum tuber	0.955	0.921	0.735	1e-113
350537039	285	beta expansin precursor [Solanum lycoper	0.955	0.901	0.715	1e-111
350538529	275	beta-expansin precursor [Solanum lycoper	0.970	0.949	0.639	2e-94
83778373	276	beta expansin 1 precursor [Solanum tuber	0.959	0.934	0.651	5e-94
224129938	274	hypothetical protein POPTRDRAFT_572072 [	0.955	0.937	0.615	2e-89
255541170	272	Beta-expansin 3 precursor, putative [Ric	0.955	0.944	0.627	3e-89
449431962	273	PREDICTED: putative expansin-B2-like [Cu	0.951	0.937	0.592	2e-83
225453525	273	PREDICTED: putative expansin-B2 [Vitis v	0.895	0.882	0.635	3e-83
225453519	273	PREDICTED: putative expansin-B2 [Vitis v	0.903	0.890	0.658	1e-81

>gi|225443047|ref|XP_002269190.1| PREDICTED: putative expansin-B2 [Vitis vinifera] gi|297743578|emb|CBI36445.3| unnamed protein product [Vitis vinifera]

 Score =  426 bits (1094), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 202/257 (78%), Positives = 225/257 (87%), Gaps = 5/257 (1%)

Query: 16  AFLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSS 75
           AFLC  E C  F PK+ NLS  GTHW++AGATWYGSP+GAGSDGG+CGYGNAVSQ PFSS
Sbjct: 22  AFLCCFETCHSFKPKYFNLSRAGTHWASAGATWYGSPEGAGSDGGSCGYGNAVSQPPFSS 81

Query: 76  FVTAIGPSLYKSGKECGACYQVKCTR--HPACSGKAVRVVITDFCPGGPCVSESAHFDLS 133
            +T IGPSLYKSGKECGACYQVKCT+  HP+CSG+ VRVVITDFCPGGPC S+SAHFDLS
Sbjct: 82  MITGIGPSLYKSGKECGACYQVKCTKRMHPSCSGRPVRVVITDFCPGGPCASQSAHFDLS 141

Query: 134 GTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDG 193
           GTAFGAMAIPGQEEKLR+ GVLE+RYARVACDYSG+ IAFHVD G+NPN  +V+VEFE+G
Sbjct: 142 GTAFGAMAIPGQEEKLRNVGVLEIRYARVACDYSGKTIAFHVDLGANPNSFSVLVEFEEG 201

Query: 194 DGDLAGVDVKE---GSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNV 250
           DGDLAGV +KE   GSG+WRAMQQSWGA WKL+AG EL PP S++LTSQYSGQTLVA NV
Sbjct: 202 DGDLAGVALKETLKGSGKWRAMQQSWGAVWKLDAGYELKPPFSIQLTSQYSGQTLVAKNV 261

Query: 251 IPQGWMPGATYRSLVNY 267
           IP GW PG+TYRSLVNY
Sbjct: 262 IPDGWKPGSTYRSLVNY 278

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83778375|gb|ABC47128.1| beta expansin 2 precursor [Solanum tuberosum]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/265 (73%), Positives = 221/265 (83%), Gaps = 8/265 (3%)

Query: 13  FFLAFLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSP 72
             +  +C++     + PKH NLS   THW TAGATWYGSP GAGSDGG+CGYG+AVSQ+P
Sbjct: 15  LIIVLVCFICPSFGYKPKHFNLSTHATHWGTAGATWYGSPHGAGSDGGSCGYGSAVSQAP 74

Query: 73  FSSFVTAIGPSLYKSGKECGACYQVKCTR--HPACSGKAVRVVITDFCPGGPCVSESAHF 130
           FSSFVT IGPSLYKSGKECGACYQVKCT+  H +CSGK VRVVITDFCPGGPCV++SAHF
Sbjct: 75  FSSFVTGIGPSLYKSGKECGACYQVKCTKKMHGSCSGKGVRVVITDFCPGGPCVAQSAHF 134

Query: 131 DLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEF 190
           DLSGTAFG+MAIPGQE+KLRDAGVL++RYARVACDYS +NI FHVDQGSN  Y AVV+EF
Sbjct: 135 DLSGTAFGSMAIPGQEQKLRDAGVLQIRYARVACDYSRKNIVFHVDQGSNSEYFAVVIEF 194

Query: 191 EDGDGDLAGVDVKE------GSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQT 244
           E+GDGDLA V++KE       + +WR MQQSWGA WKL+AGSELHPP S+RLTSQYS Q 
Sbjct: 195 EEGDGDLAKVELKEKISSITKNSKWRQMQQSWGAVWKLDAGSELHPPFSIRLTSQYSDQI 254

Query: 245 LVANNVIPQGWMPGATYRSLVNYNV 269
           L+A NVIP GW PGATYRSLVNY V
Sbjct: 255 LIAKNVIPTGWQPGATYRSLVNYRV 279

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350537039|ref|NP_001233766.1| beta expansin precursor [Solanum lycopersicum] gi|81367673|gb|ABB71677.1| beta expansin precursor [Solanum lycopersicum]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/271 (71%), Positives = 219/271 (80%), Gaps = 14/271 (5%)

Query: 13  FFLAFLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSP 72
             +  +C++     + PKH NLS   THW TAGATWYGSP GAGSDGG+CGYG+AVS++P
Sbjct: 15  LIIVLVCFICPSFGYKPKHFNLSTHATHWGTAGATWYGSPHGAGSDGGSCGYGSAVSEAP 74

Query: 73  FSSFVTAIGPSLYKSGKECGACYQVKCTR--HPACSGKAVRVVITDFCPGGPCVSESAHF 130
            SSFVT IGPSLYKSGKECGACYQVKCT+  H +CSGK VRVVITDFCPGGPCV++SAHF
Sbjct: 75  LSSFVTGIGPSLYKSGKECGACYQVKCTKKMHRSCSGKGVRVVITDFCPGGPCVAQSAHF 134

Query: 131 DLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEF 190
           DLSGTAFGAMAIPGQE+KLRDAGVL++RYARVACDYS +NI FHVDQGSN  Y AVV+EF
Sbjct: 135 DLSGTAFGAMAIPGQEQKLRDAGVLQIRYARVACDYSRKNIVFHVDQGSNSEYFAVVIEF 194

Query: 191 EDGDGDLAGVDVKEGSG------------EWRAMQQSWGATWKLNAGSELHPPLSLRLTS 238
           E GDGDLA V++KE               +WR MQQSWGA WKL+AGS+LHPP S+RLTS
Sbjct: 195 EQGDGDLAKVELKEKRSSSIISRGNKNNYKWRQMQQSWGAVWKLDAGSKLHPPFSIRLTS 254

Query: 239 QYSGQTLVANNVIPQGWMPGATYRSLVNYNV 269
           QYS Q L+ANNVIP GW PGATYRSLVNY V
Sbjct: 255 QYSDQILIANNVIPTGWQPGATYRSLVNYRV 285

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350538529|ref|NP_001234859.1| beta-expansin precursor [Solanum lycopersicum] gi|82569705|gb|ABB83474.1| beta-expansin precursor [Solanum lycopersicum]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 170/266 (63%), Positives = 203/266 (76%), Gaps = 5/266 (1%)

Query: 8   SLSLSFFLAFLCYLELCSCFYPKHLNLSAVGTH--WSTAGATWYGSPDGAGSDGGACGYG 65
           S+  ++F  F      CSC +PK  N+S V ++  WS  GATWYGSP GAGSDGGACGY 
Sbjct: 11  SIVFTYFTTFSLLTITCSCLHPKRFNVSKVQSNSDWSPPGATWYGSPSGAGSDGGACGYT 70

Query: 66  NAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVS 125
           NAV Q PFSS + A GPSL+KSGK CGACYQVKCT + ACSGK VRVVITD CPGGPC+S
Sbjct: 71  NAVDQPPFSSLIAAAGPSLFKSGKGCGACYQVKCTGNKACSGKPVRVVITDSCPGGPCLS 130

Query: 126 ESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLA 185
           ESAHFDLSGT+FGAMAI GQ ++LR+AGV++++Y RV C+Y G  + FHVD GSN NY A
Sbjct: 131 ESAHFDLSGTSFGAMAISGQADQLRNAGVIQIQYKRVECNYPGVKLTFHVDSGSNSNYFA 190

Query: 186 VVVEFEDGDGDLAGVDVKEG--SGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQ 243
            +VE+EDGDGDL  VD+K+   S  W+ MQQSWGA WKL++GS L  P SL+LT + SGQ
Sbjct: 191 ALVEYEDGDGDLNSVDLKQALDSESWQPMQQSWGAVWKLDSGSSLVAPFSLKLTGE-SGQ 249

Query: 244 TLVANNVIPQGWMPGATYRSLVNYNV 269
           T+VAN VIP GW PG TYRS+VN+ V
Sbjct: 250 TVVANGVIPAGWQPGKTYRSVVNFKV 275

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83778373|gb|ABC47127.1| beta expansin 1 precursor [Solanum tuberosum]

 Score =  350 bits (897), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 172/264 (65%), Positives = 204/264 (77%), Gaps = 6/264 (2%)

Query: 11  LSFFLAFLCYLELCSCFYPKHLN-LSAVGTH--WSTAGATWYGSPDGAGSDGGACGYGNA 67
            ++F  F      CSCF+PK LN +S + ++  WS AGATWYGSP GAGSDGGACGY NA
Sbjct: 14  FTYFTLFSILTISCSCFHPKRLNNVSKIQSNSDWSPAGATWYGSPSGAGSDGGACGYTNA 73

Query: 68  VSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSES 127
           V Q PFSS + A GPSL+KSGK CGACYQVKCT + ACSGK VRVVITD CPGGPC+SES
Sbjct: 74  VDQPPFSSLIAAAGPSLFKSGKGCGACYQVKCTGNKACSGKPVRVVITDSCPGGPCLSES 133

Query: 128 AHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVV 187
           AHFDLSGT+FGAMAI GQ ++LR+AGVL+V+Y RV C+Y G  + FHVD GSN NY A +
Sbjct: 134 AHFDLSGTSFGAMAISGQADQLRNAGVLQVQYKRVECNYPGVKLTFHVDSGSNSNYFAAL 193

Query: 188 VEFEDGDGDLAGVDVKEG--SGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTL 245
           VE+EDGDGDL  VD+K+   S  W+ MQQSWGA WKL++GS L  P SL+LT + SGQT+
Sbjct: 194 VEYEDGDGDLNRVDLKQALDSESWQPMQQSWGAVWKLDSGSSLVAPFSLKLTGE-SGQTV 252

Query: 246 VANNVIPQGWMPGATYRSLVNYNV 269
           VAN VIP GW PG TYRS++N+ V
Sbjct: 253 VANGVIPAGWQPGKTYRSVINFKV 276

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129938|ref|XP_002320708.1| hypothetical protein POPTRDRAFT_572072 [Populus trichocarpa] gi|222861481|gb|EEE99023.1| hypothetical protein POPTRDRAFT_572072 [Populus trichocarpa]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 165/268 (61%), Positives = 205/268 (76%), Gaps = 11/268 (4%)

Query: 7   ISLSLSFFLAFLCYLELCSCFYPKHLNLSAVGTH--WSTAGATWYGSPDGAGSDGGACGY 64
           + + L+FFL     +  C CF+PK  N+S + ++  WS AGATWYGSP GAGSDGGACGY
Sbjct: 12  LPIILAFFL-----VNSCHCFHPKLFNVSKIQSNSDWSPAGATWYGSPTGAGSDGGACGY 66

Query: 65  GNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTR--HPACSGKAVRVVITDFCPGGP 122
           GNAV Q+PFSSF++A G S+YKSG+ CGACYQVKCT   + ACSG  V VVITD CPG P
Sbjct: 67  GNAVEQAPFSSFISAGGDSIYKSGQGCGACYQVKCTSSSNAACSGNPVTVVITDQCPGSP 126

Query: 123 CVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPN 182
           C  ES HFDLSGTAFGAMAI G+E++LR+AGVL++++ RV C++ G+ + FHVD GSNP 
Sbjct: 127 CAQESFHFDLSGTAFGAMAISGKEDQLRNAGVLQIQHQRVPCNWPGKTVTFHVDSGSNPY 186

Query: 183 YLAVVVEFEDGDGDLAGVDVKEG--SGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQY 240
           Y A VVE+EDGDG+L  V++K+   S  W  MQ+SWGA WKL+AGS L  PLS++LTS  
Sbjct: 187 YFATVVEYEDGDGELKSVELKQALDSDSWVPMQKSWGAVWKLDAGSLLRAPLSIKLTSLE 246

Query: 241 SGQTLVANNVIPQGWMPGATYRSLVNYN 268
           SG+T+VA+ VIP GW PG TYRSLVN+N
Sbjct: 247 SGKTIVASGVIPAGWAPGQTYRSLVNFN 274

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541170|ref|XP_002511649.1| Beta-expansin 3 precursor, putative [Ricinus communis] gi|223548829|gb|EEF50318.1| Beta-expansin 3 precursor, putative [Ricinus communis]

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 165/263 (62%), Positives = 192/263 (73%), Gaps = 6/263 (2%)

Query: 11  LSFFLAFLCYLELCSCFYPKHLNLSAV---GTHWSTAGATWYGSPDGAGSDGGACGYGNA 67
           L   LA +     C CF  K  N+S      + W+ AGATWYGSP GAGSDGGACGY NA
Sbjct: 10  LVSVLALVFLFNSCYCFKHKSFNVSRTQSGDSGWAPAGATWYGSPTGAGSDGGACGYQNA 69

Query: 68  VSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSES 127
           V Q PFSS + A GPSLYKSGK CGACYQVKCT H ACSGK   VVITD CPGGPC +ES
Sbjct: 70  VDQPPFSSMIAAGGPSLYKSGKGCGACYQVKCTSHSACSGKPATVVITDECPGGPCTAES 129

Query: 128 AHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVV 187
            HFDLSGTAFGAMAI G  ++LR+AGVL++RY RV C+Y GR++ FHVD GSNP Y A +
Sbjct: 130 VHFDLSGTAFGAMAISGGADQLRNAGVLQIRYRRVQCNYPGRSVVFHVDSGSNPYYFATL 189

Query: 188 VEFEDGDGDLAGVDVKEG---SGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQT 244
           VE+EDGDG+L  V++K+       W  MQQSWGA W+LN+GS L  PLSLRLTS  SG+T
Sbjct: 190 VEYEDGDGELRSVELKQALDKEDSWAPMQQSWGAVWRLNSGSVLRGPLSLRLTSLESGKT 249

Query: 245 LVANNVIPQGWMPGATYRSLVNY 267
           +VA+ VIP  W PG TYRS+VN+
Sbjct: 250 IVASGVIPADWQPGKTYRSVVNF 272

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431962|ref|XP_004133769.1| PREDICTED: putative expansin-B2-like [Cucumis sativus] gi|449526511|ref|XP_004170257.1| PREDICTED: putative expansin-B2-like [Cucumis sativus]

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 157/265 (59%), Positives = 190/265 (71%), Gaps = 9/265 (3%)

Query: 13  FFLAFLCYLELCS---CFYPKHLNLSAV---GTHWSTAGATWYGSPDGAGSDGGACGYGN 66
           FF A +  L L     CF+PK  N+S      + WS A ATWYG PDGAGSDGG+CGYG 
Sbjct: 6   FFAALIISLSLAPPSFCFHPKSFNVSKYQSDDSDWSPAVATWYGPPDGAGSDGGSCGYGK 65

Query: 67  AVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSE 126
           AV Q PFSSF+ A GPSLYK G+ CGACYQVKC+   ACSG  V VVITD CPGG C S+
Sbjct: 66  AVEQPPFSSFIAAGGPSLYKYGQACGACYQVKCSGEGACSGNPVTVVITDSCPGGSCASD 125

Query: 127 SAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAV 186
           S HFDLSGTAFGAMA  G+ E+LR  GVL +++ RV C+Y G +I F VD GSN NY A 
Sbjct: 126 SVHFDLSGTAFGAMAATGRAEELRSLGVLHIQHKRVECNYPGTSINFIVDSGSNSNYFAA 185

Query: 187 VVEFEDGDGDLAGVDVKEG---SGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQ 243
           ++E+EDGDG+L  V++K+G   S  W  M+QSWGA WKL++GS L  P SLRLT+  SG+
Sbjct: 186 LIEYEDGDGELGSVELKQGAVDSNSWIPMKQSWGAVWKLDSGSALQAPFSLRLTALDSGK 245

Query: 244 TLVANNVIPQGWMPGATYRSLVNYN 268
           T+VANNVIP GW  G +YRS+VN++
Sbjct: 246 TVVANNVIPAGWQAGKSYRSVVNFD 270

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453525|ref|XP_002278559.1| PREDICTED: putative expansin-B2 [Vitis vinifera] gi|297734537|emb|CBI16588.3| unnamed protein product [Vitis vinifera]

 Score =  314 bits (804), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 157/247 (63%), Positives = 189/247 (76%), Gaps = 6/247 (2%)

Query: 26  CFYPKHLNLSAV--GTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPS 83
           CF+ K LN S +   T WS AGATWYG  +GAGSDGGACGY +AV ++PFS+ V+A GPS
Sbjct: 28  CFHLKLLNFSKLQSDTDWSPAGATWYGPANGAGSDGGACGYEDAVEKAPFSAKVSAGGPS 87

Query: 84  LYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIP 143
           L+KSGK CGACYQVKCT + ACSG  V V ITD CPG  CVSES HFDLSGTAFGAMA  
Sbjct: 88  LFKSGKGCGACYQVKCTGNEACSGSPVTVTITDECPG--CVSESTHFDLSGTAFGAMAKS 145

Query: 144 GQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVK 203
           GQ+++LR+AGVL+++Y RV C+Y G ++ FHVD GSN NY A ++E+EDGDGDLA V ++
Sbjct: 146 GQDDQLRNAGVLQIQYRRVECEYPGTSVVFHVDSGSNSNYFASLIEYEDGDGDLARVYLQ 205

Query: 204 EG--SGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATY 261
           +   S  W  MQQSWGA WKL+ GSEL  P S++LT+  SG TLVA NVIP GW PG TY
Sbjct: 206 QALDSDMWVPMQQSWGAVWKLDYGSELRAPFSIKLTALESGNTLVAKNVIPAGWQPGKTY 265

Query: 262 RSLVNYN 268
           RS+VN+N
Sbjct: 266 RSVVNFN 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453519|ref|XP_002275557.1| PREDICTED: putative expansin-B2 [Vitis vinifera] gi|297734541|emb|CBI16592.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 164/249 (65%), Positives = 196/249 (78%), Gaps = 6/249 (2%)

Query: 24  CSCFYPKHLNLSAV--GTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIG 81
           CSC + KHLN+S +   T WS AGATWYG   GAGSDGGACGYG+AV ++PFS+ V+A G
Sbjct: 26  CSCSHRKHLNVSKLQSDTDWSPAGATWYGPAAGAGSDGGACGYGDAVEKAPFSAKVSAGG 85

Query: 82  PSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMA 141
           PSL+KSGK CGACYQVKCT + ACSG  V V ITD CPG  CVSES HFDLSGTAFGAMA
Sbjct: 86  PSLFKSGKGCGACYQVKCTGNEACSGSPVTVTITDECPG--CVSESTHFDLSGTAFGAMA 143

Query: 142 IPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVD 201
            PGQ ++LR+AG+L+++Y RV C+Y G ++AFHVD GSNPNY A ++E+EDGDG+LAGVD
Sbjct: 144 TPGQADQLRNAGILQIQYRRVECEYPGASVAFHVDSGSNPNYFASLIEYEDGDGELAGVD 203

Query: 202 VKEG--SGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGA 259
           +++   S  W  MQQSWGA WKL++GS L  P S+RLT+  SG TLVA NVIP GW PG 
Sbjct: 204 LQQALHSNSWVPMQQSWGAVWKLDSGSGLRAPFSIRLTALESGNTLVAKNVIPAGWQPGK 263

Query: 260 TYRSLVNYN 268
           TYRSLVN+N
Sbjct: 264 TYRSLVNFN 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2018521	273	EXPB2 "expansin B2" [Arabidops	0.903	0.890	0.536	1.5e-67
TAIR|locus:2055594	259	EXPB4 "expansin B4" [Arabidops	0.884	0.918	0.475	2.2e-59
TAIR|locus:4515102723	223	EXPB6 "AT1G65681" [Arabidopsis	0.747	0.901	0.522	2.3e-55
TAIR|locus:2051338	271	EXPB1 "expansin B1" [Arabidops	0.881	0.874	0.412	2.2e-50
TAIR|locus:2123643	264	EXPB3 "expansin B3" [Arabidops	0.866	0.882	0.421	2.8e-50
TAIR|locus:2077167	263	EXLA3 "expansin-like A3" [Arab	0.702	0.718	0.338	2.2e-27
TAIR|locus:2130444	250	EXLB1 "expansin-like B1" [Arab	0.657	0.708	0.386	2.5e-26
TAIR|locus:2121803	265	EXLA2 "expansin-like A2" [Arab	0.684	0.694	0.321	8.4e-26
TAIR|locus:2015539	257	EXPA18 "expansin A18" [Arabido	0.810	0.848	0.341	4.6e-25
TAIR|locus:2077177	265	EXLA1 "expansin-like A1" [Arab	0.706	0.716	0.325	4.6e-25

TAIR|locus:2018521 EXPB2 "expansin B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 134/250 (53%), Positives = 167/250 (66%)

Query:    23 LCSCFYPKHLNLSAVGTH---WSTAGATWXXXXXXXXXXXXXXXXXNAVSQSPFSSFVTA 79
             L  CF PK  N+SA  T    WS AG+TW                 NAV+Q PFS  V+A
Sbjct:    26 LTHCFSPKKFNISAATTSDSDWSIAGSTWYGNPTGYGSDGGACGYGNAVAQPPFSKMVSA 85

Query:    80 IGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGA 139
              GPSL+KSGK CGACYQVKCT   ACS   V VVITD CPG  CV ES HFDLSGTAFGA
Sbjct:    86 GGPSLFKSGKGCGACYQVKCTSKSACSKNPVTVVITDECPG--CVKESVHFDLSGTAFGA 143

Query:   140 MAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAG 199
             MAI GQ+ +LR+ G L++ Y +V C+Y G+ + F VD+GSN N  AV+V + +GDG++  
Sbjct:   144 MAISGQDSQLRNVGELQILYKKVECNYIGKTVTFQVDKGSNANSFAVLVAYVNGDGEIGR 203

Query:   200 VDVKEG--SGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMP 257
             +++K+   S +W +M QSWGA WKL+  S L  PLSLR+TS  SG+T+VA+NVIP  W P
Sbjct:   204 IELKQALDSDKWLSMSQSWGAVWKLDVSSPLRAPLSLRVTSLESGKTVVASNVIPANWQP 263

Query:   258 GATYRSLVNY 267
             GA Y+S VN+
Sbjct:   264 GAIYKSNVNF 273

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2055594 EXPB4 "expansin B4" [Arabidopsis thaliana (taxid:3702)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 114/240 (47%), Positives = 151/240 (62%)

Query:    28 YPKHLNLSAVGTHWSTAGATWXXXXXXXXXXXXXXXXXNAVSQSPFSSFVTAIGPSLYKS 87
             Y ++  +   G+   TAG TW                 +AV+  P  + V+A GPSL+ +
Sbjct:    22 YCQNETIDVAGS--GTAGVTWYGEPFGAGSTGGACGYGSAVANPPLYAMVSAGGPSLFNN 79

Query:    88 GKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEE 147
             GK CG CYQV C  HPACSG  + V ITD CPGGPC SE  H DLSG A GA+A PGQ +
Sbjct:    80 GKGCGTCYQVVCIGHPACSGSPITVTITDECPGGPCASEPVHIDLSGKAMGALAKPGQAD 139

Query:   148 KLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSG 207
             +LR AGV+ V Y R AC Y G NI F +D G+NP Y++ VVE+E+GDGDL+ V+++   G
Sbjct:   140 QLRSAGVIRVNYKRAACLYRGTNIVFRMDAGANPYYISFVVEYENGDGDLSNVEIQPAGG 199

Query:   208 EWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLVNY 267
              + +MQ+   A WK+N+GS L  P ++RLTS  S + +VA NVIP  W P  +YRS+VN+
Sbjct:   200 SFISMQEMRSAVWKVNSGSALRGPFNIRLTSGESHKVIVAYNVIPANWKPDESYRSIVNF 259

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:4515102723 EXPB6 "AT1G65681" [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 105/201 (52%), Positives = 139/201 (69%)

Query:    67 AVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSE 126
             AV+  P    V+A GPS++ +G  CG C+Q+ C  HPACS + + V ITD CPGGPC SE
Sbjct:    22 AVANPPLYGMVSAGGPSVFNNGIGCGTCFQILCNGHPACSRRPITVTITDECPGGPCASE 81

Query:   127 SAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAV 186
              AHFDLSG A GA+A PGQ ++LR AGVL V Y RV C Y   NIAF +D G+NP Y++ 
Sbjct:    82 PAHFDLSGKAMGALARPGQGDRLRSAGVLRVYYRRVECLYRRTNIAFRMDPGANPYYISF 141

Query:   187 VVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLV 246
             VVE+E+GDGDLA ++++   GE+  MQ+   A WK+++GS L  P ++RLTS  S + ++
Sbjct:   142 VVEYENGDGDLAYIEIQPADGEFIPMQEMRSAVWKISSGSPLTGPFNIRLTSAESHKVVL 201

Query:   247 ANNVIPQGWMPGATYRSLVNY 267
             A NVIP  W P  TYRS+VN+
Sbjct:   202 AYNVIPANWKPNETYRSVVNF 222

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=IEA

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2051338 EXPB1 "expansin B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 99/240 (41%), Positives = 142/240 (59%)

Query:    31 HLNLSAVGTHWSTAGATWXXXXXXXXXXXXXXXXXNAVSQSPFSSFVTAIGPSLYKSGKE 90
             H N     T W  A ATW                 + V   PF + V A+ P L+K G+ 
Sbjct:    30 HSNQQVAATRWLPATATWYGSAEGDGSSGGACGYGSLVDVKPFKARVGAVSPILFKGGEG 89

Query:    91 CGACYQVKCTRHPACSGKAVRVVITDFCPGGPCV-SESAHFDLSGTAFGAMAIPGQEEKL 149
             CGACY+V+C     CS +AV ++ TD  P GP   ++  HFDLSG AFG MAIPG    +
Sbjct:    90 CGACYKVRCLDKTICSKRAVTIIATDQSPSGPSAKAKHTHFDLSGAAFGHMAIPGHNGVI 149

Query:   150 RDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKE-GSGE 208
             R+ G+L + Y R AC Y G+NIAFHV+ GS   +L++++E+EDG+GD+  + +++ GS E
Sbjct:   150 RNRGLLNILYRRTACKYRGKNIAFHVNAGSTDYWLSLLIEYEDGEGDIGSMHIRQAGSKE 209

Query:   209 WRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLVNYN 268
             W +M+  WGA W +  G  L  P S++LT+  + +TL A +VIP  W+P ATY S +N++
Sbjct:   210 WISMKHIWGANWCIVEGP-LKGPFSVKLTTLSNNKTLSATDVIPSNWVPKATYTSRLNFS 268

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2123643 EXPB3 "expansin B3" [Arabidopsis thaliana (taxid:3702)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 100/237 (42%), Positives = 142/237 (59%)

Query:    33 NLSAVGTHWSTAGATWXXXXXXXXXXXXXXXXXNAVSQSPFSSFVTAIGPSLYKSGKECG 92
             N     +HW  A ATW                   V   P  + V A+ P L+K+G+ CG
Sbjct:    28 NRHVSNSHWLPAVATWYGSPNGDGSDGGACGYGTLVDVKPLHARVGAVNPILFKNGEGCG 87

Query:    93 ACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDA 152
             ACY+V+C     CS +AV V+ITD CPG  C   S HFDLSG  FG +AI G+   LR+ 
Sbjct:    88 ACYKVRCLDKSICSRRAVTVIITDECPG--CSKTSTHFDLSGAVFGRLAIAGESGPLRNR 145

Query:   153 GVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKE-GSGEWRA 211
             G++ V Y R AC Y G+NIAFHV++GS   +L+++VEFEDG+GD+  + +++ G+ EW  
Sbjct:   146 GLIPVIYRRTACKYRGKNIAFHVNEGSTDFWLSLLVEFEDGEGDIGSMHIRQAGAREWLE 205

Query:   212 MQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLVNYN 268
             M+  WGA W +  G  L  P S++LT+  +G+TL A +V+P+ W P ATY S +N++
Sbjct:   206 MKHVWGANWCI-IGGPLKGPFSIKLTTLSAGKTLSATDVVPRNWAPKATYSSRLNFS 261

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0019953 "sexual reproduction" evidence=IEA

GO:0006949 "syncytium formation" evidence=IEP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2077167 EXLA3 "expansin-like A3" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 67/198 (33%), Positives = 102/198 (51%)

Query:    68 VSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSES 127
             ++ S F+  + A  PS+YK G  CGAC+QV+C     C+ K   V++TD        S  
Sbjct:    49 MATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCNSKGTIVMVTDLN-----TSNQ 103

Query:   128 AHFDLSGTAFGAMAIP--GQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSN-PNYL 184
                 LS  AF AMA P  G ++ L   G+++V Y RV C+Y  RN+   V++ S  PNYL
Sbjct:   104 TDLVLSSRAFRAMAKPVVGVDKYLLKQGIVDVEYQRVPCNYGKRNLNVRVEEASKKPNYL 163

Query:   185 AVVVEFEDGDGDLAGVDVKE-GSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQ 243
             A+ + ++ G  ++ G+D+   GS +W  M +S GA W  +            +T  Y G+
Sbjct:   164 AIKLLYQGGQTEVVGIDIAPVGSSQWSYMSRSHGAVWATDKVPTGALQFKFTVTGGYDGK 223

Query:   244 TLVANNVIPQGWMPGATY 261
             T+ +  V+P  W  G  Y
Sbjct:   224 TVWSKRVLPANWNSGRIY 241

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0009826 "unidimensional cell growth" evidence=NAS

GO:0009828 "plant-type cell wall loosening" evidence=NAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2130444 EXLB1 "expansin-like B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 75/194 (38%), Positives = 106/194 (54%)

Query:    77 VTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTA 136
             V+ +   L+ +G  CGACYQV+C   P CS + V VV TD   G     +   F LS  A
Sbjct:    62 VSGVSWRLWNNGTGCGACYQVRCKIPPHCSEEGVYVVATDSGEG-----DGTDFILSPKA 116

Query:   137 FGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGS-NPNYLAVVVEFEDGDG 195
             +G MA PG E +L   GV+ V Y R+ C Y+G N+ + + + S NP+YLA++V +  G  
Sbjct:   117 YGRMARPGTENQLYSFGVVNVEYQRIPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVN 176

Query:   196 DLAGVDV-KEGSGEWRAMQQSWGATWKLNAGSELHPP---LSLR-LTSQYSGQTLVAN-N 249
             D+  V+V +E   EWR M++ +GA   L      +PP   L+LR L    +G   + + N
Sbjct:   177 DILAVEVWQEDCKEWRRMRRVFGAVHDLQ-----NPPRGTLTLRFLVYGSAGINWIQSPN 231

Query:   250 VIPQGWMPGATYRS 263
              IP  W  GATY S
Sbjct:   232 AIPADWTAGATYDS 245

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=ISS

GO:0009828 "plant-type cell wall loosening" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

TAIR|locus:2121803 EXLA2 "expansin-like A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 62/193 (32%), Positives = 97/193 (50%)

Query:    73 FSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDL 132
             F+  + A  PS+YK G  CGAC+QV+C     CS K   V++TD        +      L
Sbjct:    55 FAGHIAAALPSIYKDGSGCGACFQVRCKNPTLCSSKGTTVIVTDLNK-----TNQTDLVL 109

Query:   133 SGTAFGAMAIP--GQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGS-NPNYLAVVVE 189
             S  AF AMA P  G +  L   G++++ Y RV CDY  + +   V++ S NPNYLA+ + 
Sbjct:   110 SSRAFRAMAKPVVGADRDLLKQGIVDIEYRRVPCDYGNKKMNVRVEESSKNPNYLAIKLL 169

Query:   190 FEDGDGDLAGVDVKE-GSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVAN 248
             ++ G  ++  + + + GS  W  M +S GA W  +            +T+ Y G+ + + 
Sbjct:   170 YQGGQTEVVAIYIAQVGSSHWSYMTRSHGAVWVTDKVPNGALQFRFVVTAGYDGKMVWSQ 229

Query:   249 NVIPQGWMPGATY 261
              V+P  W  G +Y
Sbjct:   230 RVLPANWEAGKSY 242

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=ISS

GO:0019953 "sexual reproduction" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=NAS

GO:0009828 "plant-type cell wall loosening" evidence=NAS

TAIR|locus:2015539 EXPA18 "expansin A18" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 83/243 (34%), Positives = 109/243 (44%)

Query:    38 GTHWSTAGATWXXXXXXXXXXXXXXXXXNAVSQSPFSSFVTAIGPSLYKSGKECGACYQV 97
             GT W TA AT+                 N +  S +    TA+  +L+  G  CG C+Q+
Sbjct:    28 GTPWRTASATFYGDDTGSATMGGACGYGN-MYDSGYGVATTALSTALFNEGYACGQCFQL 86

Query:    98 KCTRHPAC--SGKAVRVVITDFCP---------GGPCVSESAHFDLSGTAFGAMAIPGQE 146
             KC   P C     A  V  T+ CP         GG C     HFDL+  AF  M I   +
Sbjct:    87 KCVSSPNCYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAF--MKIANWK 144

Query:   147 EKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGS 206
                  AG++ V Y RVAC   G  I F  +   N  +L V V    G GD+  + VK   
Sbjct:   145 -----AGIIPVSYRRVACKKIG-GIRFKFE--GNGYWLLVYVMNVGGPGDIKTMAVKGSR 196

Query:   207 GEWRAMQQSWGATWKLNAGSELH-PPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLV 265
               W  M  +WGA+++  A S L+   LS RLTS  + QT+ A N  P  W  G TY+S  
Sbjct:   197 TGWINMSHNWGASYQ--AFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKTYQSKA 254

Query:   266 NYN 268
             N+N
Sbjct:   255 NFN 257

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2077177 EXLA1 "expansin-like A1" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 65/200 (32%), Positives = 101/200 (50%)

Query:    67 AVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSE 126
             +++ S F+  + A  PS+YK G  CGAC+QV+C     CS K   V+ITD        S 
Sbjct:    48 SMATSFFAGHIAAAIPSIYKDGAGCGACFQVRCKNPKLCSTKGTIVMITDLNK-----SN 102

Query:   127 SAHFDLSGTAFGAMAIP--GQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSN-PNY 183
                  LS  AF AMA P  G ++ L   G++++ Y RV CDY  +N+   V++ S  PNY
Sbjct:   103 QTDLVLSSRAFRAMAKPIVGADKDLLKQGIVDIEYQRVPCDYGNKNMNVRVEEASKKPNY 162

Query:   184 LAVVVEFEDGDGDLAGVDVKE-GSG-EWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYS 241
             L + + ++ G  ++  +D+ + GS   W  M +S GA W  +            +T  Y 
Sbjct:   163 LEIKLLYQGGQTEVVSIDIAQVGSSPNWGYMTRSHGAVWVTDKVPTGAIQFRFVVTGGYD 222

Query:   242 GQTLVANNVIPQGWMPGATY 261
             G+ + + +V+P  W  G  Y
Sbjct:   223 GKMIWSQSVLPSNWEAGKIY 242

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009826 "unidimensional cell growth" evidence=NAS

GO:0009828 "plant-type cell wall loosening" evidence=NAS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SHY6	EXPB2_ARATH	No assigned EC number	0.5896	0.9070	0.8937	yes	no
Q7XT40	EXB15_ORYSJ	No assigned EC number	0.5873	0.9739	0.9924	yes	no
Q5W6Z9	EXB18_ORYSJ	No assigned EC number	0.5762	0.9739	0.9924	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
PLN03023	247	PLN03023, PLN03023, Expansin-like B1; Provisional	6e-46
pfam01357	82	pfam01357, Pollen_allerg_1, Pollen allergen	4e-38
PLN00050	247	PLN00050, PLN00050, expansin A; Provisional	3e-36
PLN00193	256	PLN00193, PLN00193, expansin-A; Provisional	3e-28
pfam03330	77	pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like	4e-21
smart00837	87	smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like	4e-11
PLN03024	125	PLN03024, PLN03024, Putative EG45-like domain cont	7e-07
PLN00115	118	PLN00115, PLN00115, pollen allergen group 3; Provi	5e-06

>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional

 Score =  154 bits (390), Expect = 6e-46
 Identities = 94/265 (35%), Positives = 139/265 (52%), Gaps = 27/265 (10%)

Query: 9   LSLSFFLAFLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAV 68
             LS +  FLC + L        L L      ++ + AT+YGSPD  G+  GACG+G   
Sbjct: 1   FPLSHYCCFLCVIVL--------LPLLCKSQDFTYSRATYYGSPDCLGTPTGACGFGE-Y 51

Query: 69  SQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESA 128
            ++     V  +   LY++G  CGACYQV+C     CS   V VV+TD+  G     +  
Sbjct: 52  GRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKAPNLCSDDGVNVVVTDYGEG-----DKT 105

Query: 129 HFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGS-NPNYLAVV 187
            F LS  A+  +A P    +L   GV++V Y R+ C Y+G N+ F V + S  P+YLA+V
Sbjct: 106 DFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIV 165

Query: 188 VEFEDGDGDLAGVDV-KEGSGEWRAMQQSWGATWKLNAGSELHPP---LSLR-LTSQYSG 242
           + ++ G  D+  V++ +E   EWR M++++GA W +      +PP   ++LR   S  +G
Sbjct: 166 MLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMP-----NPPKGPITLRFQVSGSAG 220

Query: 243 QTLV-ANNVIPQGWMPGATYRSLVN 266
           QT V A NVIP  W  G  Y S + 
Sbjct: 221 QTWVQAKNVIPSDWKAGVAYDSNIQ 245

Length = 247

>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen

 Score =  128 bits (324), Expect = 4e-38
 Identities = 45/83 (54%), Positives = 60/83 (72%), Gaps = 2/83 (2%)

Query: 171 IAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKE-GSGEWRAMQQSWGATWKLNAGSELH 229
           + F V+ GSNP +LAV+VE   GDGD+  V++KE GSGEW  M ++WGA W+ ++   L 
Sbjct: 1   VRFTVNGGSNPYFLAVLVENVGGDGDIVAVEIKEAGSGEWIPMSRNWGANWQSDSVL-LG 59

Query: 230 PPLSLRLTSQYSGQTLVANNVIP 252
            PLS R+TS  SG+TLVA+NVIP
Sbjct: 60  GPLSFRVTSSDSGKTLVADNVIP 82

This family contains allergens lol PI, PII and PIII from Lolium perenne. Length = 82

>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional

 Score =  128 bits (324), Expect = 3e-36
 Identities = 82/234 (35%), Positives = 123/234 (52%), Gaps = 23/234 (9%)

Query: 38  GTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQV 97
           G+ W+ A AT+YG  D +G+ GGACGYGN  SQ  + +   A+  +L+ +G  CGAC+++
Sbjct: 22  GSGWTGAHATFYGGGDASGTMGGACGYGNLYSQG-YGTNTAALSTALFNNGLSCGACFEI 80

Query: 98  KCTR-HPACSGKAVRVVITDFCP---------GGPCVSESAHFDLSGTAFGAMAIPGQEE 147
           KC   +  C   ++ +  T+FCP         GG C     HFDLS   F  +A      
Sbjct: 81  KCVNDNIWCLPGSIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIA------ 134

Query: 148 KLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSG 207
               AG++ V+Y RVAC  SG  I F ++  S  N   V++    G GD+  V +K    
Sbjct: 135 -QYKAGIVPVQYRRVACRKSG-GIRFTINGHSYFNL--VLITNVGGAGDIVAVSIKGSKS 190

Query: 208 EWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATY 261
            W+AM ++WG  W+ N+       LS ++T+   G+T+++NN  P  W  G TY
Sbjct: 191 NWQAMSRNWGQNWQSNSYLN-GQALSFKVTTS-DGRTVISNNAAPSNWAFGQTY 242

Length = 247

>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional

 Score =  108 bits (270), Expect = 3e-28
 Identities = 85/278 (30%), Positives = 129/278 (46%), Gaps = 38/278 (13%)

Query: 5   SSISLSLSFFLAFLCYLEL-CSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACG 63
           S   L L+  L F CYL +  + F P         + W+ A AT+YG  D +G+ GGACG
Sbjct: 2   SKSLLGLAILLQFCCYLFINVNAFTP---------SGWTKAHATFYGGSDASGTMGGACG 52

Query: 64  YGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKC----TRHPACSGKAVRVVITDFCP 119
           YGN  S + + +   A+  +L+  G  CG CY++ C           G +V +  T+FCP
Sbjct: 53  YGNLYS-TGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTITATNFCP 111

Query: 120 ---------GGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRN 170
                    GG C     HFD++  A+  + I          G++ V + RV C   G  
Sbjct: 112 PNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI-------YRGGIVPVLFQRVPCKKHG-G 163

Query: 171 IAFHVDQGSNPNYLAVV-VEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLNAGSELH 229
           + F ++     +Y  +V +    G G +  V +K     W AM ++WGA W+ NA  +  
Sbjct: 164 VRFTIN---GRDYFELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQ 220

Query: 230 PPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLVNY 267
             LS ++T+   GQT    NV+P  W  G T+ S V +
Sbjct: 221 -SLSFKVTTT-DGQTRFFLNVVPANWGFGQTFSSSVQF 256

Length = 256

>gnl|CDD|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel

 Score = 84.2 bits (209), Expect = 4e-21
 Identities = 37/88 (42%), Positives = 42/88 (47%), Gaps = 16/88 (18%)

Query: 77  VTAIGPSLYKSGKECGACYQVKCT----RHPACS-GKAVRVVITDFCPGGPCVSESAHFD 131
             A   SLY  G  CG CYQVKC         C   ++V V ITD CP  P      HFD
Sbjct: 1   TAAGSASLYNDGTACGECYQVKCLTAAHPTGTCRVLRSVTVTITDRCPFPP----RRHFD 56

Query: 132 LSGTAFGAMAIPGQEEKLRDAGVLEVRY 159
           LSG AF A+A P        AG++ V Y
Sbjct: 57  LSGPAFEALAKP-------RAGIVPVEY 77

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen. Length = 77

>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel

 Score = 57.8 bits (140), Expect = 4e-11
 Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 18/93 (19%)

Query: 78  TAIGPSLYKSGKECGACYQVKCTRHP-AC-SGKAVRVVITDFCP---------GGPCVSE 126
            A+  +L+ +G  CGACY++ C   P  C  G ++ V  T+FCP         GG C   
Sbjct: 2   AALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPP 61

Query: 127 SAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRY 159
             HFDLS  AF  +A          AG++ V+Y
Sbjct: 62  RKHFDLSQPAFEKIAQY-------KAGIVPVKY 87

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen. Length = 87

>gnl|CDD|178595 PLN03024, PLN03024, Putative EG45-like domain containing protein 1; Provisional

 Score = 46.9 bits (111), Expect = 7e-07
 Identities = 34/89 (38%), Positives = 43/89 (48%), Gaps = 16/89 (17%)

Query: 61  ACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCT------RHPACSGKAVRVVI 114
           AC Y      + F   + A   SL+ +G+ CG  + VKC        HP C+GK+V V I
Sbjct: 36  AC-YRG----TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHP-CTGKSVTVKI 89

Query: 115 TDFCPGGPCVSESAHFDLSGTAFGAMAIP 143
            D CP G C S     DLS  AF  +A P
Sbjct: 90  VDHCPSG-CAST---LDLSREAFAQIANP 114

Length = 125

>gnl|CDD|177729 PLN00115, PLN00115, pollen allergen group 3; Provisional

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 8/101 (7%)

Query: 168 GRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKE-GSGEWR-AMQQSWGATWKLNAG 225
              + F V +GS+   L +V      +  ++ V++KE G+ +W   +++S   TW L + 
Sbjct: 23  ATEVTFKVGKGSSSTSLELVT-----NVAISEVEIKEKGAKDWVDDLKESSTNTWTLKSK 77

Query: 226 SELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLVN 266
           + L  P S+R   +  G   V ++VIP+ +  G+ Y++ + 
Sbjct: 78  APLKGPFSVRFLVKGGGYR-VVDDVIPESFKAGSVYKTGIQ 117

Length = 118

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
PLN00193	256	expansin-A; Provisional	100.0
PLN03023	247	Expansin-like B1; Provisional	100.0
PLN00050	247	expansin A; Provisional	100.0
COG4305	232	Endoglucanase C-terminal domain/subunit and relate	99.96
PLN03024	125	Putative EG45-like domain containing protein 1; Pr	99.95
PLN00115	118	pollen allergen group 3; Provisional	99.92
PF01357	82	Pollen_allerg_1: Pollen allergen; InterPro: IPR007	99.89
smart00837	87	DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b	99.87
PF03330	78	DPBB_1: Rare lipoprotein A (RlpA)-like double-psi	99.77
PF00967	119	Barwin: Barwin family; InterPro: IPR001153 Barwin	99.23
PF07249	119	Cerato-platanin: Cerato-platanin; InterPro: IPR010	98.16
TIGR00413	208	rlpA rare lipoprotein A. This is a family of proka	97.95
COG0797	233	RlpA Lipoproteins [Cell envelope biogenesis, outer	97.93
PRK10672	361	rare lipoprotein A; Provisional	97.16
PF02015	201	Glyco_hydro_45: Glycosyl hydrolase family 45; Inte	93.09

>PLN00193 expansin-A; Provisional

Probab=100.00  E-value=7.6e-64  Score=449.90  Aligned_cols=217  Identities=34%  Similarity=0.736  Sum_probs=200.4

Q ss_pred             CCCCeeEEEEEEeCCCCCCCCCcCcCCCCCCCCCCCCCCeEEEeCccccCCCCcCCcEEEEEEC---CCCCCC-CCcEEE
Q 024303           37 VGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCT---RHPACS-GKAVRV  112 (269)
Q Consensus        37 ~~~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~---~~~~C~-g~sv~V  112 (269)
                      ..++|.+++|||||++|+.++++|||||++ +...+++.++||+|+++|++|+.||+||||+|.   +++.|. +++|+|
T Consensus        26 ~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~-l~~~~~g~~~AAls~~lf~~G~~CGaCyev~C~~~~~~~~C~~g~sV~V  104 (256)
T PLN00193         26 TPSGWTKAHATFYGGSDASGTMGGACGYGN-LYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTI  104 (256)
T ss_pred             CCCCceeeEEEEcCCCCCCCCCCcccCCCC-ccccCCCceeeecCHhHccCCccccCeEEEECCCCCCCccccCCCeEEE
Confidence            455899999999999998889999999998 566889999999999999999999999999994   456785 459999


Q ss_pred             EEeecCCCC---------CCCCCCCcEEcChHHHhhcccCCcccccccCceeeeEEEEEecCCCCceEEEEEccCCCCce
Q 024303          113 VITDFCPGG---------PCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNY  183 (269)
Q Consensus       113 ~V~D~Cp~~---------~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g~ni~~~v~~Gss~~w  183 (269)
                      +|||+||++         ||.+++.|||||.+||.+||.       ++.|+++|+||+|+|+++| ||+|+++  +++||
T Consensus       105 t~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~-------~~~Giv~V~yrRVpC~~~G-~i~f~v~--gn~y~  174 (256)
T PLN00193        105 TATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGI-------YRGGIVPVLFQRVPCKKHG-GVRFTIN--GRDYF  174 (256)
T ss_pred             EEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeEeEEEEEeccccCC-CcEEEEc--CCccE
Confidence            999999962         898888999999999999997       6899999999999999999 9999998  38999


Q ss_pred             eEEEEEEecCCCceeEEEEEcCCCceEEcccccCceeeeCCCCCCCC-CeEEEEEEeeCCeEEEEcccccCCCCCCcEEe
Q 024303          184 LAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLNAGSELHP-PLSLRLTSQYSGQTLVANNVIPQGWMPGATYR  262 (269)
Q Consensus       184 ~av~v~n~~g~g~I~sVei~~~~~~W~~m~r~~g~~W~~~~~~~~~g-p~~~RiTs~~~G~~v~~~nvip~~~~~G~~y~  262 (269)
                      ++|+|.|++|+++|++|+|++++++|++|+|+||++|+++..  +.+ ||+||||+ .+|+++++.||||++|++|++|+
T Consensus       175 ~~vlv~nv~G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~--l~g~plsfRvts-~~G~~~~~~~viPa~W~~G~ty~  251 (256)
T PLN00193        175 ELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAY--LDGQSLSFKVTT-TDGQTRFFLNVVPANWGFGQTFS  251 (256)
T ss_pred             EEEEEEEeCCCccEEEEEEecCCCCeeECcccccceeEecCC--CCCCCEEEEEEE-cCCeEEEECceeCCCCCCCCeEe
Confidence            999999999999999999999867899999999999999863  555 99999999 99999999999999999999999


Q ss_pred             cCccc
Q 024303          263 SLVNY  267 (269)
Q Consensus       263 t~~qF  267 (269)
                      +.+||
T Consensus       252 s~vqf  256 (256)
T PLN00193        252 SSVQF  256 (256)
T ss_pred             cCccC
Confidence            99998

>PLN03023 Expansin-like B1; Provisional

Probab=100.00  E-value=9.2e-64  Score=447.30  Aligned_cols=223  Identities=37%  Similarity=0.761  Sum_probs=204.6

Q ss_pred             CCCCeeEEEEEEeCCCCCCCCCcCcCCCCCCCCCCCCCCeEEEeCccccCCCCcCCcEEEEEECCCCCCCCCcEEEEEee
Q 024303           37 VGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITD  116 (269)
Q Consensus        37 ~~~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D  116 (269)
                      ..++|.+++|||||++++.|+++|||||++ +....++.++||++ ++|++|+.||+||||+|.+++.|.+++|+|+|||
T Consensus        21 ~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~-~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~~~~C~~~~v~V~iTd   98 (247)
T PLN03023         21 KSQDFTYSRATYYGSPDCLGTPTGACGFGE-YGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKAPNLCSDDGVNVVVTD   98 (247)
T ss_pred             hcCCcccceEEEeCCCCCCCCCCccccCCc-cccCCCcceeeeeh-hhhcCCchhcccEEeecCCCCccCCCCeEEEEEe
Confidence            455799999999999999999999999999 66677888999998 9999999999999999998889999999999999


Q ss_pred             cCCCCCCCCCCCcEEcChHHHhhcccCCcccccccCceeeeEEEEEecCCCCceEEEEEccCCC-CceeEEEEEEecCCC
Q 024303          117 FCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSN-PNYLAVVVEFEDGDG  195 (269)
Q Consensus       117 ~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g~ni~~~v~~Gss-~~w~av~v~n~~g~g  195 (269)
                      .||.  +   +.|||||.+||.+||.|+++++|+..|+++|+||||||.++|.+|+|+|.++++ |+|++|+|.|++|++
T Consensus        99 ~~~~--~---~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~yl~vlv~~vgG~G  173 (247)
T PLN03023         99 YGEG--D---KTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIVMLYQAGQN  173 (247)
T ss_pred             CCCC--C---CCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCceEEEEEEEcCCCc
Confidence            9984  2   689999999999999999999999999999999999999998889999999996 999999999999999


Q ss_pred             ceeEEEEEcC-CCceEEcccccCceeeeCCCCCCCCCeEEEEEEe-eCCeE-EEEcccccCCCCCCcEEecCcccc
Q 024303          196 DLAGVDVKEG-SGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQ-YSGQT-LVANNVIPQGWMPGATYRSLVNYN  268 (269)
Q Consensus       196 ~I~sVei~~~-~~~W~~m~r~~g~~W~~~~~~~~~gp~~~RiTs~-~~G~~-v~~~nvip~~~~~G~~y~t~~qF~  268 (269)
                      +|++||||++ +.+|++|+|+||++|+++.  ++.+|++||++.. .+|++ |+++||||++|++|++|++++||.
T Consensus       174 dI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~--~l~Gp~slrf~v~~~~g~~~vva~nViPa~Wk~G~TY~s~vq~~  247 (247)
T PLN03023        174 DILAVEIWQEDCKEWRGMRKAYGAVWDMPN--PPKGPITLRFQVSGSAGQTWVQAKNVIPSDWKAGVAYDSNIQLD  247 (247)
T ss_pred             cEEEEEEEecCCCCceECccCCcceeEcCC--CCCCceeEEEEEEeCCCcEEEEECceeCCCCCCCCEEecccccC
Confidence            9999999996 6789999999999999975  5899888888651 36654 889999999999999999999995

>PLN00050 expansin A; Provisional

Probab=100.00  E-value=1.6e-62  Score=439.71  Aligned_cols=216  Identities=36%  Similarity=0.796  Sum_probs=199.5

Q ss_pred             CCCCeeEEEEEEeCCCCCCCCCcCcCCCCCCCCCCCCCCeEEEeCccccCCCCcCCcEEEEEECCC-CCCCCCcEEEEEe
Q 024303           37 VGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRH-PACSGKAVRVVIT  115 (269)
Q Consensus        37 ~~~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~-~~C~g~sv~V~V~  115 (269)
                      +..+|.+++|||||++++.|+++|||||++ +...+++.++||+|+.+|++|+.||+||||+|.+. ..|.+++|+|+||
T Consensus        21 ~~~~W~~a~AT~Yg~~dg~gt~gGACGYg~-l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~~~~C~~gsV~V~it   99 (247)
T PLN00050         21 YGSGWTGAHATFYGGGDASGTMGGACGYGN-LYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDNIWCLPGSIIITAT   99 (247)
T ss_pred             cCCCccccEEEEcCCCCCCCCCCcccCCCC-ccccCCCceeeeccHhHccCCccccceEEEEcCCCCcccCCCcEEEEEe
Confidence            456899999999999999899999999999 56678999999999999999999999999999653 4698889999999


Q ss_pred             ecCCC---------CCCCCCCCcEEcChHHHhhcccCCcccccccCceeeeEEEEEecCCCCceEEEEEccCCCCceeEE
Q 024303          116 DFCPG---------GPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAV  186 (269)
Q Consensus       116 D~Cp~---------~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g~ni~~~v~~Gss~~w~av  186 (269)
                      |+||+         +||.+++.|||||.+||.+||.       ++.|+++|+||+|||+++| ||+|++++  ++||++|
T Consensus       100 d~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~-------~~aGii~V~yRRVpC~~~G-~i~f~v~g--~sy~~~v  169 (247)
T PLN00050        100 NFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQ-------YKAGIVPVQYRRVACRKSG-GIRFTING--HSYFNLV  169 (247)
T ss_pred             cCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhh-------hcCCeeeeEEEEecCcCCC-CeEEEEcC--CceeEEE
Confidence            99996         2898889999999999999998       6899999999999999998 99999985  4599999


Q ss_pred             EEEEecCCCceeEEEEEcCCCceEEcccccCceeeeCCCCCCCC-CeEEEEEEeeCCeEEEEcccccCCCCCCcEEecCc
Q 024303          187 VVEFEDGDGDLAGVDVKEGSGEWRAMQQSWGATWKLNAGSELHP-PLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLV  265 (269)
Q Consensus       187 ~v~n~~g~g~I~sVei~~~~~~W~~m~r~~g~~W~~~~~~~~~g-p~~~RiTs~~~G~~v~~~nvip~~~~~G~~y~t~~  265 (269)
                      +|.|++|+++|++|+|+++.++|++|+|+||++|+++..  +.+ ||+||||+ .+|++++++||||++|++|++|++. 
T Consensus       170 lv~nv~G~gdi~~V~ikg~~~~W~~M~R~wGa~W~~~~~--l~g~~lsfRvt~-~~G~~~~~~~V~Pa~W~~G~ty~~~-  245 (247)
T PLN00050        170 LITNVGGAGDIVAVSIKGSKSNWQAMSRNWGQNWQSNSY--LNGQALSFKVTT-SDGRTVISNNAAPSNWAFGQTYTGM-  245 (247)
T ss_pred             EEEEcCCCccEEEEEEecCCCCeeECccccCceeEccCC--CCCCcEEEEEEe-cCCcEEEECceeCCCCCCCCeEecC-
Confidence            999999999999999999766899999999999999873  555 99999999 9999999999999999999999995 


Q ss_pred             cc
Q 024303          266 NY  267 (269)
Q Consensus       266 qF  267 (269)
                      ||
T Consensus       246 ~f  247 (247)
T PLN00050        246 QF  247 (247)
T ss_pred             cC
Confidence            88

>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]

Probab=99.96  E-value=2.7e-28  Score=205.61  Aligned_cols=199  Identities=23%  Similarity=0.315  Sum_probs=163.5

Q ss_pred             CCCeeEEEEEEeCCCCCCCCCcCcCCCCCCCCCCCCCCeEEEeCccccCCC----CcCCcEEEEEECCCCCCCCCcEEEE
Q 024303           38 GTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSG----KECGACYQVKCTRHPACSGKAVRVV  113 (269)
Q Consensus        38 ~~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g----~~CG~C~~V~c~~~~~C~g~sv~V~  113 (269)
                      =.+.++|.|||-+...    .+||--    +++.|.+..+.|+|..+-+-|    ++-|+.++|.  +|    ++.++|.
T Consensus        27 wd~~f~G~ATyTgsGY----sGGAfl----LDPI~sd~eITAlNPaqlNlGGipAAmAGaYLrVq--GP----KG~TTVY   92 (232)
T COG4305          27 WDDLFEGYATYTGSGY----SGGAFL----LDPIPSDMEITALNPAQLNLGGIPAAMAGAYLRVQ--GP----KGKTTVY   92 (232)
T ss_pred             cccccceeEEEecccc----cCceEE----ecCcCCcceeeecCHHHcccCCchhhhccceEEEE--CC----CCceEEE
Confidence            4456899999977643    367663    345677888999998877654    7899999999  77    5788999


Q ss_pred             EeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccccCceeeeEEEEEecCCCCceEEEEEccCCCCceeEEEEEEecC
Q 024303          114 ITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDG  193 (269)
Q Consensus       114 V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g~ni~~~v~~Gss~~w~av~v~n~~g  193 (269)
                      |+|.-|+  -.  ++.||||+.||.+|.+       +..|+++|+||.|+-|.+| |+.+++|+||+.||.+|||+||.-
T Consensus        93 VTDlYPe--ga--sGaLDLSpNAFakIGn-------m~qGrIpvqWrvv~aPvtG-N~~YRiKeGSs~WWAAIQVRnH~y  160 (232)
T COG4305          93 VTDLYPE--GA--SGALDLSPNAFAKIGN-------MKQGRIPVQWRVVKAPVTG-NFTYRIKEGSSRWWAAIQVRNHKY  160 (232)
T ss_pred             Eeccccc--cc--ccccccChHHHhhhcc-------hhcCccceeEEEecccccc-cEEEEEecCCccceeeeeeecccC
Confidence            9999998  33  7899999999999998       7999999999999999999 999999999999999999999984


Q ss_pred             CCceeEEEEEcCCCceEEcccccCceeeeCCCCCCCCCeEEEEEEeeCCeEEEEc-ccccCCCCC-CcEEecCcccc
Q 024303          194 DGDLAGVDVKEGSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVAN-NVIPQGWMP-GATYRSLVNYN  268 (269)
Q Consensus       194 ~g~I~sVei~~~~~~W~~m~r~~g~~W~~~~~~~~~gp~~~RiTs~~~G~~v~~~-nvip~~~~~-G~~y~t~~qF~  268 (269)
                        ||.++|+.+ ++.|..|.+.+||.|.-..  ...+|+.+|+|+ +-|++++.. -.+|..-+. --+...++||+
T Consensus       161 --PV~KlE~~q-dg~WinlpK~dYNhFVgT~--LG~~pL~~RmTD-IRG~~l~DtlP~Lpk~asSKaY~V~G~VQFs  231 (232)
T COG4305         161 --PVMKLEYEQ-DGKWINLPKMDYNHFVGTN--LGTGPLKVRMTD-IRGKVLKDTLPKLPKSASSKAYTVPGHVQFS  231 (232)
T ss_pred             --ceEEEEEec-CCeEeeccccccceeeccc--cCCCceEEEEee-cccceeecccccccccccCCceeecceeecC
Confidence              999999999 6899999999999887554  456899999999 999999864 233332221 11345677885

>PLN03024 Putative EG45-like domain containing protein 1; Provisional

Probab=99.95  E-value=5.2e-28  Score=196.91  Aligned_cols=120  Identities=34%  Similarity=0.613  Sum_probs=96.2

Q ss_pred             CCccchhhHHHHHHHHHHHHhhcccccCCCCCccccCCCCeeEEEEEEeCCCCCCCCCcCcCCCCCCCCCCCCCCeEEEe
Q 024303            1 MATRSSISLSLSFFLAFLCYLELCSCFYPKHLNLSAVGTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAI   80 (269)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~   80 (269)
                      |..|++|..++++++..++                    ....|+||||++.+     .|+|+ ++    .+++.++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~--------------------~~~~G~AT~Y~~~~-----~gAC~-~~----~~~g~~iaAl   50 (125)
T PLN03024          1 MSKRILIFSTVLVFLFSVS--------------------YATPGIATFYTSYT-----PSACY-RG----TSFGVMIAAA   50 (125)
T ss_pred             CceeeHHHHHHHHHHhhhh--------------------cccceEEEEeCCCC-----Ccccc-CC----CCCCCEeEEe
Confidence            6778877776633222222                    23469999998653     58994 44    2468899999


Q ss_pred             CccccCCCCcCCcEEEEEECCC-----CCCCCCcEEEEEeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccccCcee
Q 024303           81 GPSLYKSGKECGACYQVKCTRH-----PACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVL  155 (269)
Q Consensus        81 s~~~~~~g~~CG~C~~V~c~~~-----~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~  155 (269)
                      ++.+|++|+.||+||||+|.++     ..|++++|+|+|+|+||++ |.   .|||||++||.+||+       .+.|++
T Consensus        51 s~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~gksV~V~VtD~CP~~-C~---~~~DLS~~AF~~iA~-------~~aG~v  119 (125)
T PLN03024         51 SDSLWNNGRVCGKMFTVKCKGPRNAVPHPCTGKSVTVKIVDHCPSG-CA---STLDLSREAFAQIAN-------PVAGII  119 (125)
T ss_pred             CHHHcCCCcccCceEEEEECCCCccccccccCCeEEEEEEcCCCCC-CC---CceEcCHHHHHHhcC-------ccCCEE
Confidence            9999999999999999999765     3689999999999999941 66   599999999999998       578999


Q ss_pred             eeEEEE
Q 024303          156 EVRYAR  161 (269)
Q Consensus       156 ~i~wr~  161 (269)
                      +|+|.+
T Consensus       120 ~V~y~~  125 (125)
T PLN03024        120 NIDYIP  125 (125)
T ss_pred             EEEEeC
Confidence            999974

>PLN00115 pollen allergen group 3; Provisional

Probab=99.92  E-value=5.3e-25  Score=177.21  Aligned_cols=93  Identities=27%  Similarity=0.548  Sum_probs=85.9

Q ss_pred             ceEEEEEccCCCCceeEEEEEEecCCCceeEEEEEcC-CCceE-EcccccCceeeeCCCCCCCCCeEEEEEEeeCCeEEE
Q 024303          169 RNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEG-SGEWR-AMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLV  246 (269)
Q Consensus       169 ~ni~~~v~~Gss~~w~av~v~n~~g~g~I~sVei~~~-~~~W~-~m~r~~g~~W~~~~~~~~~gp~~~RiTs~~~G~~v~  246 (269)
                      .+|.|+|.+|||+|||+|.+ |    ++|.+|||++. +.+|+ +|+|+||++|+++++.|+.|||+||+|+ .+|++++
T Consensus        24 ~~v~F~V~~gSnp~yL~ll~-~----~dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~GPlS~R~t~-~~G~~~v   97 (118)
T PLN00115         24 TEVTFKVGKGSSSTSLELVT-N----VAISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKGPFSVRFLV-KGGGYRV   97 (118)
T ss_pred             CceEEEECCCCCcceEEEEE-e----CCEEEEEEeecCCCcccCccccCccceeEecCCCCCCCceEEEEEE-eCCCEEE
Confidence            48999999999999998876 3    37999999998 56899 9999999999998766789999999999 9999999


Q ss_pred             EcccccCCCCCCcEEecCccc
Q 024303          247 ANNVIPQGWMPGATYRSLVNY  267 (269)
Q Consensus       247 ~~nvip~~~~~G~~y~t~~qF  267 (269)
                      ++||||++|++|++|++++||
T Consensus        98 a~nViPa~Wk~G~tY~s~vq~  118 (118)
T PLN00115         98 VDDVIPESFKAGSVYKTGIQV  118 (118)
T ss_pred             ECceECCCCCCCCEEeccccC
Confidence            999999999999999999997

>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []

Probab=99.89  E-value=3.4e-23  Score=157.35  Aligned_cols=80  Identities=53%  Similarity=0.939  Sum_probs=66.9

Q ss_pred             EEEEEccCCCCceeEEEEEEecCCCceeEEEEEcC-CCceEEcccccCceeeeCCCCCCCCCeEEEEEEeeC-CeEEEEc
Q 024303          171 IAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEG-SGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYS-GQTLVAN  248 (269)
Q Consensus       171 i~~~v~~Gss~~w~av~v~n~~g~g~I~sVei~~~-~~~W~~m~r~~g~~W~~~~~~~~~gp~~~RiTs~~~-G~~v~~~  248 (269)
                      |+|+|+++|++||++|+|.|++|.++|++|||+++ +++|++|+|+||++|++++ +++.+||+||||+ .+ |++++++
T Consensus         1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~-~~~~~pls~Rvts-~~~G~~vv~~   78 (82)
T PF01357_consen    1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDS-NPPGGPLSFRVTS-GDSGQTVVAD   78 (82)
T ss_dssp             EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE--SS--SSEEEEEEE-TTTSEEEEEE
T ss_pred             CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECC-CCcCCCEEEEEEE-cCCCeEEEEe
Confidence            68999999999999999999999999999999987 5679999999999999986 4788999999999 66 9999999


Q ss_pred             cccc
Q 024303          249 NVIP  252 (269)
Q Consensus       249 nvip  252 (269)
                      ||||
T Consensus        79 nViP   82 (82)
T PF01357_consen   79 NVIP   82 (82)
T ss_dssp             EEE-
T ss_pred             cccC
Confidence            9998

They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.

>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Probab=99.87  E-value=9.5e-23  Score=156.46  Aligned_cols=76  Identities=37%  Similarity=0.801  Sum_probs=68.4

Q ss_pred             EEEeCccccCCCCcCCcEEEEEEC-CCCCCCC-CcEEEEEeecCCCC---------CCCCCCCcEEcChHHHhhcccCCc
Q 024303           77 VTAIGPSLYKSGKECGACYQVKCT-RHPACSG-KAVRVVITDFCPGG---------PCVSESAHFDLSGTAFGAMAIPGQ  145 (269)
Q Consensus        77 ~aA~s~~~~~~g~~CG~C~~V~c~-~~~~C~g-~sv~V~V~D~Cp~~---------~C~~~~~~lDLs~~AF~~ia~~~~  145 (269)
                      +||+|+.+|++|+.||+||||+|. +++.|.+ ++|+|+|+|+||++         ||.+++.|||||.+||.+||.   
T Consensus         1 taA~s~~lf~~G~~CG~Cy~v~C~~~~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~---   77 (87)
T smart00837        1 TAALSTALFNNGASCGACYEIMCVDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQ---   77 (87)
T ss_pred             CcccCHHHccCCccccceEEEEeCCCCCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhh---
Confidence            479999999999999999999996 4667875 59999999999973         898778999999999999998   


Q ss_pred             ccccccCceeeeEE
Q 024303          146 EEKLRDAGVLEVRY  159 (269)
Q Consensus       146 ~~~~~~~G~~~i~w  159 (269)
                          ++.|+|+|+|
T Consensus        78 ----~~~Gvi~v~y   87 (87)
T smart00837       78 ----YKAGIVPVKY   87 (87)
T ss_pred             ----hcCCEEeeEC
Confidence                6899999987

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.

>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures

Probab=99.77  E-value=6.4e-19  Score=132.12  Aligned_cols=72  Identities=44%  Similarity=0.857  Sum_probs=61.2

Q ss_pred             EEEeCccccCCCCcCCcEEEEEEC--CCCC--CCC--CcEEEEEeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccc
Q 024303           77 VTAIGPSLYKSGKECGACYQVKCT--RHPA--CSG--KAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLR  150 (269)
Q Consensus        77 ~aA~s~~~~~~g~~CG~C~~V~c~--~~~~--C~g--~sv~V~V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~  150 (269)
                      +||++..+|++|..||+||+++|.  ....  |..  ++|+|+|+|+||+  |.  .+|||||+.||++|+.       .
T Consensus         1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~--~~--~~~lDLS~~aF~~la~-------~   69 (78)
T PF03330_consen    1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG--CP--PNHLDLSPAAFKALAD-------P   69 (78)
T ss_dssp             EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT--SS--SSEEEEEHHHHHHTBS-------T
T ss_pred             CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC--Cc--CCEEEeCHHHHHHhCC-------C
Confidence            589999999999999999999993  2333  766  9999999999999  88  7999999999999998       5


Q ss_pred             cCceeeeEE
Q 024303          151 DAGVLEVRY  159 (269)
Q Consensus       151 ~~G~~~i~w  159 (269)
                      +.|+++|+|
T Consensus        70 ~~G~i~V~w   78 (78)
T PF03330_consen   70 DAGVIPVEW   78 (78)
T ss_dssp             TCSSEEEEE
T ss_pred             CceEEEEEC
Confidence            899999999

They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.

>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds

Probab=99.23  E-value=1e-11  Score=98.62  Aligned_cols=64  Identities=36%  Similarity=0.619  Sum_probs=47.5

Q ss_pred             CCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccccCceeeeEEEEEec
Q 024303           87 SGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVAC  164 (269)
Q Consensus        87 ~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C  164 (269)
                      +...||+|++||.+.    ++.+++|+|+|+|+.       ++|||.+.+|++|-..|+|   ...|.+.|.|++|+|
T Consensus        56 gq~~CGkClrVTNt~----tga~~~~RIVDqCsn-------GGLDld~~vF~~iDtdG~G---~~~Ghl~V~y~fV~C  119 (119)
T PF00967_consen   56 GQDSCGKCLRVTNTA----TGAQVTVRIVDQCSN-------GGLDLDPTVFNQIDTDGQG---YAQGHLIVDYEFVDC  119 (119)
T ss_dssp             SGGGTT-EEEEE-TT----T--EEEEEEEEE-SS-------SSEES-SSSHHHH-SSSHH---HHHTEEEEEEEEE--
T ss_pred             CcccccceEEEEecC----CCcEEEEEEEEcCCC-------CCcccChhHHhhhccCCcc---cccceEEEEEEEEcC
Confidence            457899999999543    478999999999875       5799999999999876555   688999999999999

It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.

>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family

Probab=98.16  E-value=1.4e-05  Score=64.83  Aligned_cols=73  Identities=19%  Similarity=0.471  Sum_probs=50.4

Q ss_pred             CCCCeEEEeCc-cccCCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccc
Q 024303           72 PFSSFVTAIGP-SLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLR  150 (269)
Q Consensus        72 p~~~~~aA~s~-~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~  150 (269)
                      |.-..+.+... .-| ++..||.|+|++-.      +++|.|..+|.=+        ..|+|+.+||+.|.+. ++   .
T Consensus        40 p~Fp~IGg~~~V~gW-nS~~CGtC~~lty~------g~si~vlaID~a~--------~gfnis~~A~n~LT~g-~a---~  100 (119)
T PF07249_consen   40 PNFPYIGGAPAVAGW-NSPNCGTCWKLTYN------GRSIYVLAIDHAG--------GGFNISLDAMNDLTNG-QA---V  100 (119)
T ss_dssp             TTTTSEEEETT--ST-T-TTTT-EEEEEET------TEEEEEEEEEE-S--------SSEEE-HHHHHHHHTS--C---C
T ss_pred             CCCCeeccccccccC-CCCCCCCeEEEEEC------CeEEEEEEEecCC--------CcccchHHHHHHhcCC-cc---c
Confidence            33345666654 456 56899999999962      6899999999943        3599999999999873 22   5


Q ss_pred             cCceeeeEEEEEe
Q 024303          151 DAGVLEVRYARVA  163 (269)
Q Consensus       151 ~~G~~~i~wr~V~  163 (269)
                      ..|+|+++|++|+
T Consensus       101 ~lG~V~a~~~qV~  113 (119)
T PF07249_consen  101 ELGRVDATYTQVD  113 (119)
T ss_dssp             CC-EEE-EEEEE-
T ss_pred             ceeEEEEEEEEcC
Confidence            6799999999996

It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.

>TIGR00413 rlpA rare lipoprotein A

Probab=97.95  E-value=0.0001  Score=64.82  Aligned_cols=95  Identities=24%  Similarity=0.271  Sum_probs=69.8

Q ss_pred             EEEEEeCCC-CCCCCCcCcCCCCCCCCCCCCCCeEEEeCccccCCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCC
Q 024303           44 AGATWYGSP-DGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGP  122 (269)
Q Consensus        44 G~aT~Yg~~-~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~  122 (269)
                      |.|+|||.. .|.   .-|+|-.-     ....+.||-.+-      -.|..++|+...    ++++|+|+|.|++|-  
T Consensus         1 G~ASwYg~~f~G~---~TAnGe~y-----~~~~~tAAHktL------PlgT~V~VtNl~----ngrsviVrVnDRGPf--   60 (208)
T TIGR00413         1 GLASWYGPKFHGR---KTANGEVY-----NMKALTAAHKTL------PFNTYVKVTNLH----NNRSVIVRINDRGPF--   60 (208)
T ss_pred             CEEeEeCCCCCCC---cCCCCeec-----CCCccccccccC------CCCCEEEEEECC----CCCEEEEEEeCCCCC--
Confidence            679999863 221   34443221     123456665543      568899999654    489999999999996  


Q ss_pred             CCCCCCcEEcChHHHhhcccCCcccccccCceeeeEEEEEecCCC
Q 024303          123 CVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYS  167 (269)
Q Consensus       123 C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~  167 (269)
                        .+..-+|||..|+.+|..       ...|+.+|+.+.+.....
T Consensus        61 --~~gRiIDLS~aAA~~Lg~-------~~~G~a~V~vevl~~~~~   96 (208)
T TIGR00413        61 --SDDRIIDLSHAAAREIGL-------ISRGVGQVRIEVLHVAKN   96 (208)
T ss_pred             --CCCCEEECCHHHHHHcCC-------CcCceEEEEEEEEecCCC
Confidence              235789999999999987       689999999999987753

This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.

>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]

Probab=97.93  E-value=7.6e-05  Score=66.74  Aligned_cols=70  Identities=26%  Similarity=0.280  Sum_probs=56.8

Q ss_pred             CeEEEeCccccCCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccccCce
Q 024303           75 SFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGV  154 (269)
Q Consensus        75 ~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~  154 (269)
                      .++||-.+--+      |.-++||..+    ++++|+|+|.|++|   +.. ...+|||..|+++|+.       ...|+
T Consensus       109 ~~tAAH~TLP~------~t~v~VtNl~----NgrsvvVRINDRGP---f~~-gRiIDlS~aAA~~l~~-------~~~G~  167 (233)
T COG0797         109 ALTAAHKTLPL------PTYVRVTNLD----NGRSVVVRINDRGP---FVS-GRIIDLSKAAADKLGM-------IRSGV  167 (233)
T ss_pred             ccccccccCCC------CCEEEEEEcc----CCcEEEEEEeCCCC---CCC-CcEeEcCHHHHHHhCC-------ccCce
Confidence            45666654444      5689999665    38999999999999   554 4689999999999987       68999


Q ss_pred             eeeEEEEEecC
Q 024303          155 LEVRYARVACD  165 (269)
Q Consensus       155 ~~i~wr~V~C~  165 (269)
                      .+|+.+.+.+.
T Consensus       168 a~V~i~~l~~~  178 (233)
T COG0797         168 AKVRIEVLGVA  178 (233)
T ss_pred             EEEEEEEeccc
Confidence            99999999876

>PRK10672 rare lipoprotein A; Provisional

Probab=97.16  E-value=0.0048  Score=58.68  Aligned_cols=93  Identities=18%  Similarity=0.138  Sum_probs=62.3

Q ss_pred             eEEEEEEeCCCCCCCCCcCcCCCCCCCCCCCCCCeEEEeCccccCCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCC
Q 024303           42 STAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGG  121 (269)
Q Consensus        42 ~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~  121 (269)
                      ..|.|+|||..-. | ..-+.|-..     ....+.||..+-      --|..++||...    +|++|+|+|.|++|- 
T Consensus        79 ~~G~ASwYg~~f~-G-~~TA~Ge~~-----~~~~~tAAH~tL------Plps~vrVtNl~----ngrsvvVrVnDRGP~-  140 (361)
T PRK10672         79 QAGLAAIYDAEAG-S-NLTASGERF-----DPNALTAAHPTL------PIPSYVRVTNLA----NGRMIVVRINDRGPY-  140 (361)
T ss_pred             eEEEEEEeCCccC-C-CcCcCceee-----cCCcCeeeccCC------CCCCEEEEEECC----CCcEEEEEEeCCCCC-
Confidence            3789999986421 0 122222111     123456666543      347899999655    489999999999995 


Q ss_pred             CCCCCCCcEEcChHHHhhcccCCcccccccCceeeeEEEEE
Q 024303          122 PCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARV  162 (269)
Q Consensus       122 ~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V  162 (269)
                         .+..-+|||..|+++|..       ...+.+.|+.-.|
T Consensus       141 ---~~gRiiDLS~aAA~~Lg~-------~~~~~V~ve~i~v  171 (361)
T PRK10672        141 ---GPGRVIDLSRAAADRLNT-------SNNTKVRIDPIIV  171 (361)
T ss_pred             ---CCCCeeEcCHHHHHHhCC-------CCCceEEEEEEee
Confidence               235789999999999986       3456667766665

>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3

Probab=93.09  E-value=0.12  Score=45.47  Aligned_cols=54  Identities=26%  Similarity=0.302  Sum_probs=33.6

Q ss_pred             EEEeCccccCCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcChH
Q 024303           77 VTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGT  135 (269)
Q Consensus        77 ~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs~~  135 (269)
                      +||.+-.-......|++|||++=++. .-.+|+.+|+|++.=-+    -..+||||-.+
T Consensus        70 faA~~~~G~~e~~~Cc~Cy~LtFt~g-~l~GKkmiVQ~tNtG~d----lg~n~FDl~iP  123 (201)
T PF02015_consen   70 FAAASITGGSESSWCCACYELTFTSG-PLKGKKMIVQVTNTGGD----LGSNQFDLAIP  123 (201)
T ss_dssp             EEEEE-TT--HHHHTT-EEEEEE-SS-TTTT-EEEEEEEEE-TT----TTTTEEEEE-T
T ss_pred             eeeeeecCCCCCCcccceEEEEEcCC-CcCCCEeEEEecccCCC----CCCCeEEEEeC
Confidence            56665332233478999999997752 23589999999999764    33789998764

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
2hcz_X	245	Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans		5e-45
1n10_A	241	Crystal Structure Of Phl P 1, A Major Timothy Grass		1e-44
1bmw_A	96	A Fibronectin Type Iii Fold In Plant Allergens: The		7e-10

>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245

Iteration: 1
 Score =  177 bits (449), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 87/204 (42%), Positives = 129/204 (63%), Gaps = 10/204 (4%)
Query: 68  VSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITD--FCPGGPCVS 125
           V+  P+S         ++K GK CG+CY+V+C   P CSG  V V ITD  + P  P   
Sbjct: 47  VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIAP--- 103
Query: 126 ESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDY-SGRNIAFHVDQGSNPNYL 184
              HFDLSG AFG++A PG  +K+R  G+++V + RV C Y +G+ I FH+++G NPNYL
Sbjct: 104 --YHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYL 161
Query: 185 AVVVEFEDGDGDLAGVDVKEG-SGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQ 243
           AV+V++   DGD+  +++++  S EW+ M+ SWGA W+++    L  P S+RLTS+ SG+
Sbjct: 162 AVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSE-SGK 220
Query: 244 TLVANNVIPQGWMPGATYRSLVNY 267
            ++A +VIP  W P A Y S V +
Sbjct: 221 KVIAKDVIPANWRPDAVYTSNVQF 244

>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241

Iteration: 1
 Score =  176 bits (446), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 98/241 (40%), Positives = 140/241 (58%), Gaps = 12/241 (4%)
Query: 29  PKHLNLSAV-GTHWSTAGATWXXXXXXXXXXXXXXX-XXNAVSQSPFSSFVTAIGPSLYK 86
           P   N++A  G  W  A +TW                    V + PFS         ++K
Sbjct: 6   PPGPNITATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFK 65
Query: 87  SGKECGACYQVKCTRHPACSGKAVRVVITDFC--PGGPCVSESAHFDLSGTAFGAMAIPG 144
           SG+ CG+C+++KCT+  ACSG+ V V ITD    P  P      HFDLSG AFGAMA  G
Sbjct: 66  SGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIAP-----YHFDLSGHAFGAMAKKG 120
Query: 145 QEEKLRDAGVLEVRYARVACDY-SGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVK 203
            E+KLR AG LE+++ RV C Y  G  + FHV++GSNPNYLA++V++ +GDGD+  VD+K
Sbjct: 121 DEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIK 180
Query: 204 E-GSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYR 262
           E G  +W  +++SWGA W+++   +L  P ++R T++  G    A +VIP+GW    +Y 
Sbjct: 181 EKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTE-GGTKTEAEDVIPEGWKADTSYE 239
Query: 263 S 263
           S
Sbjct: 240 S 240

>pdb|1BMW|A Chain A, A Fibronectin Type Iii Fold In Plant Allergens: The Solution Structure Of Phl Pii From Timothy Grass Pollen, Nmr, 38 Structures Length = 96

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 170 NIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKE-GSGEWRAMQQSWGATWKLNAGSEL 228
            + F V++GSN  +LAV+V++E GD  +A V+++E GS EW AM +  G  W  ++   L
Sbjct: 3   KVTFTVEKGSNEKHLAVLVKYE-GD-TMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPL 60
Query: 229 HPPLSLRLTSQYSGQTLVANNVIPQGWMPGATY 261
             P + R  ++  G   V ++V+P+ +  GATY
Sbjct: 61  QGPFNFRFLTE-KGMKNVFDDVVPEKYTIGATY 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
2hcz_X	245	Beta-expansin 1A; domain 1 is A beta barrel and do	6e-72
1n10_A	241	PHL P I, pollen allergen PHL P 1; plant allergen,	8e-71
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	8e-52
3ft1_A	100	PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate	1e-38
2jnz_A	108	PHL P 3 allergen; timothy grass pollen; NMR {Phleu	3e-37
1bmw_A	96	PHL P II, pollen allergen PHL P2; allergy, immunog	4e-34
1wc2_A	181	Endoglucanase; hydrolase, cellulase, cellulose, do	3e-12

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245

 Score =  220 bits (560), Expect = 6e-72
 Identities = 105/244 (43%), Positives = 149/244 (61%), Gaps = 10/244 (4%)

Query: 29  PKHLNLSAV-GTHWSTAGATWYGSPDGAGSD--GGACGYGNAVSQSPFSSFVTAIGPSLY 85
           P   N++      W TA ATWYG P+GAG+   GGACG  N V+  P+S         ++
Sbjct: 6   PPGPNITTNYNGKWLTARATWYGQPNGAGAPDNGGACGIKN-VNLPPYSGMTACGNVPIF 64

Query: 86  KSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQ 145
           K GK CG+CY+V+C   P CSG  V V ITD            HFDLSG AFG++A PG 
Sbjct: 65  KDGKGCGSCYEVRCKEKPECSGNPVTVYITDMNYEPIA---PYHFDLSGKAFGSLAKPGL 121

Query: 146 EEKLRDAGVLEVRYARVACDYS-GRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKE 204
            +K+R  G+++V + RV C Y  G+ I FH+++G NPNYLAV+V++   DGD+  +++++
Sbjct: 122 NDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQD 181

Query: 205 -GSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRS 263
             S EW+ M+ SWGA W+++    L  P S+RLTS+ SG+ ++A +VIP  W P A Y S
Sbjct: 182 KLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSE-SGKKVIAKDVIPANWRPDAVYTS 240

Query: 264 LVNY 267
            V +
Sbjct: 241 NVQF 244

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241

 Score =  216 bits (552), Expect = 8e-71
 Identities = 107/240 (44%), Positives = 150/240 (62%), Gaps = 10/240 (4%)

Query: 29  PKHLNLSAV-GTHWSTAGATWYGSPDGAGSD--GGACGYGNAVSQSPFSSFVTAIGPSLY 85
           P   N++A  G  W  A +TWYG P GAG    GGACGY + V + PFS         ++
Sbjct: 6   PPGPNITATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKD-VDKPPFSGMTGCGNTPIF 64

Query: 86  KSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQ 145
           KSG+ CG+C+++KCT+  ACSG+ V V ITD            HFDLSG AFGAMA  G 
Sbjct: 65  KSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIA---PYHFDLSGHAFGAMAKKGD 121

Query: 146 EEKLRDAGVLEVRYARVACDYSGRN-IAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKE 204
           E+KLR AG LE+++ RV C Y     + FHV++GSNPNYLA++V++ +GDGD+  VD+KE
Sbjct: 122 EQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKE 181

Query: 205 -GSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRS 263
            G  +W  +++SWGA W+++   +L  P ++R T++  G    A +VIP+GW    +Y S
Sbjct: 182 KGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTE-GGTKTEAEDVIPEGWKADTSYES 240

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208

 Score =  167 bits (424), Expect = 8e-52
 Identities = 43/226 (19%), Positives = 77/226 (34%), Gaps = 37/226 (16%)

Query: 41  WSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSG----KECGACYQ 96
                AT+ GS    G  GGA          P    +TAI P+    G       G+  +
Sbjct: 6   LHEGYATYTGS----GYSGGAFLLDP----IPSDMEITAINPADLNYGGVKAALAGSYLE 57

Query: 97  VKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLE 156
           V+             V +TD  P G         DLS  AF  +            G + 
Sbjct: 58  VE------GPKGKTTVYVTDLYPEGA----RGALDLSPNAFRKIGNM-------KDGKIN 100

Query: 157 VRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSGEWRAMQQSW 216
           +++  V    +G N  + + +GS+  + A+ V   +    +  ++ +   G+W  M++  
Sbjct: 101 IKWRVVKAPITG-NFTYRIKEGSSRWWAAIQV--RNHKYPVMKMEYE-KDGKWINMEKMD 156

Query: 217 GATWKLNAGSELHPPLSLRLTSQYSGQTLVA-NNVIPQGWMPGATY 261
              +           L +R+T    G+ +      +P+     A  
Sbjct: 157 YNHFVSTNL--GTGSLKVRMTDI-RGKVVKDTIPKLPESGTSKAYT 199

>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100

 Score =  129 bits (327), Expect = 1e-38
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 3/101 (2%)

Query: 168 GRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKE-GSGEWRAMQQSWGATWKLNAGS 226
              + F V +GS+P  L + +++      LA V++++ GS EW  + +  G  W++ +  
Sbjct: 1   AVQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKK-GNVWEVKSSK 59

Query: 227 ELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLVNY 267
            L  P + R  S+  G   V + VIP  +  G TY+     
Sbjct: 60  PLVGPFNFRFMSK-GGMRNVFDEVIPTAFSIGKTYKPEEQE 99

>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108

 Score =  126 bits (319), Expect = 3e-37
 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 159 YARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKE-GSGEWRAMQQSWG 217
           +       S   + F V +GS+P  L + +++      LA V++++ GS EW  + +  G
Sbjct: 7   HHHG----SAVQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKK-G 61

Query: 218 ATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRS 263
             W++ +   L  P + R  S+  G   V + VIP  +  G TY+ 
Sbjct: 62  NVWEVKSSKPLVGPFNFRFMSK-GGMRNVFDEVIPTAFSIGKTYKP 106

>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96

 Score =  118 bits (296), Expect = 4e-34
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 4/95 (4%)

Query: 170 NIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKE-GSGEWRAMQQSWGATWKLNAGSEL 228
            + F V++GSN  +LAV+V++E        V+++E GS EW AM +  G  W  ++   L
Sbjct: 3   KVTFTVEKGSNEKHLAVLVKYEGDTMA--EVELREHGSDEWVAMTKGEGGVWTFDSEEPL 60

Query: 229 HPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRS 263
             P + R  ++  G   V ++V+P+ +  GATY  
Sbjct: 61  QGPFNFRFLTE-KGMKNVFDDVVPEKYTIGATYAP 94

>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181

 Score = 62.7 bits (151), Expect = 3e-12
 Identities = 34/161 (21%), Positives = 44/161 (27%), Gaps = 46/161 (28%)

Query: 41  WSTAGATWYGSPDGAGSDGGACGYGNAVSQSPF----SSFVTAIGPSLYKS------GKE 90
            S A  T Y       S  GACG G A   + F     SFV A     + S      G+ 
Sbjct: 14  KSCASTTNYH-----DSHKGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQH 68

Query: 91  CGACYQVKCTRHPACS-------GKAVRVVITDFCPGGP----------------CVSES 127
           CG C ++  T             G +   +IT+ CP                        
Sbjct: 69  CGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYE 128

Query: 128 AHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSG 168
            H DL             +         E  +  V CD   
Sbjct: 129 LHLDLEN--------GRSQVTGMGWNNPETTWEVVNCDSEH 161

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
2hcz_X	245	Beta-expansin 1A; domain 1 is A beta barrel and do	100.0
1n10_A	241	PHL P I, pollen allergen PHL P 1; plant allergen,	100.0
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	100.0
3ft1_A	100	PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate	99.96
1wc2_A	181	Endoglucanase; hydrolase, cellulase, cellulose, do	99.95
2jnz_A	108	PHL P 3 allergen; timothy grass pollen; NMR {Phleu	99.95
1bmw_A	96	PHL P II, pollen allergen PHL P2; allergy, immunog	99.92
1bw3_A	125	Barwin, basic barley SEED protein; lectin; NMR {Ho	99.67
4avr_A	95	PA4485; unknown function, GRAM-negative bacteria,	99.28
2kqa_A	129	Cerato-platanin; elicitor, secreted, toxin; NMR {C	98.13
3m3g_A	120	EPL1 protein; fungal, plant defense, fungus, polys	98.08
3sul_A	122	Cerato-platanin-like protein; double PSI beta barr	98.05
3suk_A	125	Cerato-platanin-like protein; double PSI beta barr	97.95
3suj_A	127	Cerato-platanin 1; double PSI beta barrel, unknown	97.91
3sum_A	136	Cerato-platanin-like protein; double PSI beta barr	97.83
2eng_A	210	Endoglucanase V; cellulose degradation, hydrolase	95.18

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}

Probab=100.00  E-value=4.3e-67  Score=469.98  Aligned_cols=227  Identities=45%  Similarity=0.955  Sum_probs=212.3

Q ss_pred             cCCCCeeEEEEEEeCCCCCCCC--CcCcCCCCCCCCCCCCCCeEEEeCccccCCCCcCCcEEEEEECCCCCCCCCcEEEE
Q 024303           36 AVGTHWSTAGATWYGSPDGAGS--DGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVV  113 (269)
Q Consensus        36 ~~~~~~~~G~aT~Yg~~~~~g~--~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~  113 (269)
                      .++.+|+.|+||||+++++.|+  ++|||||++ ++..|++.++||+++.+|++|+.||+||||+|.+++.|.+++|+|+
T Consensus        14 ~~~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~-~~~~p~~~~~aAls~~lf~~G~~CG~Cy~V~c~~~~~C~~~sv~V~   92 (245)
T 2hcz_X           14 NYNGKWLTARATWYGQPNGAGAPDNGGACGIKN-VNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSGNPVTVY   92 (245)
T ss_dssp             CCCCCCEEEEEEECSCTTSCSSTTSCCTTCCCC-TTSTTTTTCEEEECHHHHGGGTSTTCEEEEECCSSSSBCSSCEEEE
T ss_pred             ccCCceeeeEEEEeCCCCCCCcCCCCccCCCCC-CCcCCCCCEEEEeCHHHcCCchhcCCeEEEEeCCCCccCCCCEEEE
Confidence            4678899999999999988777  799999999 6778899999999999999999999999999988778999999999


Q ss_pred             EeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccccCceeeeEEEEEecCCCC-ceEEEEEccCCCCceeEEEEEEec
Q 024303          114 ITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSG-RNIAFHVDQGSNPNYLAVVVEFED  192 (269)
Q Consensus       114 V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g-~ni~~~v~~Gss~~w~av~v~n~~  192 (269)
                      |||+|+   |+.++.|||||++||.+||+++++++|++.|+++|+||+|+|+++| .||+|++++||++||++|+|.|++
T Consensus        93 VtD~C~---C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~ni~f~v~~Gs~~~~~avlv~n~~  169 (245)
T 2hcz_X           93 ITDMNY---EPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVA  169 (245)
T ss_dssp             EEEECC---CTTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCCCSTTCCCEEEECCCCSSSCCCEEEECCC
T ss_pred             EEeccC---CCCCCccEEcCHHHHHHHhccccccccccCCEEEEEEEEEecCCCCCCcEEEEEcCCCCcceEEEEEEecC
Confidence            999998   7556899999999999999999999999999999999999999983 589999999999999999999999


Q ss_pred             CCCceeEEEEEcC-CCceEEcccccCceeeeCCCCCCCCCeEEEEEEeeCCeEEEEcccccCCCCCCcEEecCccc
Q 024303          193 GDGDLAGVDVKEG-SGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSLVNY  267 (269)
Q Consensus       193 g~g~I~sVei~~~-~~~W~~m~r~~g~~W~~~~~~~~~gp~~~RiTs~~~G~~v~~~nvip~~~~~G~~y~t~~qF  267 (269)
                      +.++|++|||+++ ++.|++|+|+|||+|+++.+.++.+||+||||+ .+||+|+++||||++|++|++|++.+||
T Consensus       170 g~g~V~~V~ik~~~~~~W~~m~r~~G~~W~~~~~~~l~gpls~RvT~-~~G~~v~~~nViP~~w~~g~ty~~~~qf  244 (245)
T 2hcz_X          170 DDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTS-ESGKKVIAKDVIPANWRPDAVYTSNVQF  244 (245)
T ss_dssp             TTCCEEEEEBCCSSSCSCBCCEEEETTEEECSCCSSCCSSCCEEEEE-TTSCEEEESCSCCSSCCTTCEEECSCCC
T ss_pred             CCCCEEEEEEEeCCCCceeECccCCCCEEEECCCCCCCCCEEEEEEE-eCCcEEEEeeeecCCCCCCCEEeCcccc
Confidence            8889999999998 458999999999999998754578899999999 9999999999999999999999999999

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3

Probab=100.00  E-value=2.3e-66  Score=464.11  Aligned_cols=224  Identities=46%  Similarity=0.944  Sum_probs=202.3

Q ss_pred             cCCCCeeEEEEEEeCCCCCCCC--CcCcCCCCCCCCCCCCCCeEEEeCccccCCCCcCCcEEEEEECCCCCCCCCcEEEE
Q 024303           36 AVGTHWSTAGATWYGSPDGAGS--DGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVV  113 (269)
Q Consensus        36 ~~~~~~~~G~aT~Yg~~~~~g~--~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~  113 (269)
                      .++.+|+.|+||||+++++.|+  ++|||||++ ++..|++.++||+++.+|++|+.||+||||+|.+++.|.+++|+|+
T Consensus        14 ~~~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~-~~~~~~g~~~aAls~~lf~~G~~CG~CyeV~c~~~~~C~~~~v~V~   92 (241)
T 1n10_A           14 TYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKD-VDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVH   92 (241)
T ss_dssp             BCCCSCEEEEEEEEC----------CCTTCCCC-TTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSSTTBCSCCEEEE
T ss_pred             cccCCceeeEEEEeCCCCCCCcCCCCeeCCCCC-cCcCCCCcEEEEeCHHHccCcccCCCeEEEEeCCCCccCCCCEEEE
Confidence            3788999999999999987777  799999999 6778899999999999999999999999999988778999999999


Q ss_pred             EeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccccCceeeeEEEEEecCCCC-ceEEEEEccCCCCceeEEEEEEec
Q 024303          114 ITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSG-RNIAFHVDQGSNPNYLAVVVEFED  192 (269)
Q Consensus       114 V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g-~ni~~~v~~Gss~~w~av~v~n~~  192 (269)
                      |||+|+   |++++.|||||++||.+||++|++++|++.|+++|+||+|+|+++| .||+|++++||++||++|+|.|++
T Consensus        93 VtD~C~---C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~~i~f~v~~Gs~~~~~~vlv~n~~  169 (241)
T 1n10_A           93 ITDDNE---EPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVN  169 (241)
T ss_dssp             EEEECS---SCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCTTCCCEEEECTTCBTTEEEEEEECCC
T ss_pred             EeEecC---CCCCCcceecCHHHHHHhhccCcccccccCCEEEEEEEEEeCCCCCCCceEEEEcCCCCcceEEEEEEecC
Confidence            999995   8766899999999999999999999999999999999999999984 589999999999999999999998


Q ss_pred             CCCceeEEEEEcC-CCceEEcccccCceeeeCCCCCCCCCeEEEEEEeeCCeEEEEcccccCCCCCCcEEecC
Q 024303          193 GDGDLAGVDVKEG-SGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRSL  264 (269)
Q Consensus       193 g~g~I~sVei~~~-~~~W~~m~r~~g~~W~~~~~~~~~gp~~~RiTs~~~G~~v~~~nvip~~~~~G~~y~t~  264 (269)
                      +.++|++|||+++ +++|++|+|+|||+|+++.+.++.+||+||||+ .+||+|+++||||++|++|++|++.
T Consensus       170 g~g~V~~V~ik~~~~~~W~~m~r~wG~~W~~~~~~~l~gpls~RvT~-~~G~~v~~~nViP~~w~~g~ty~~~  241 (241)
T 1n10_A          170 GDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTT-EGGTKTEAEDVIPEGWKADTSYESK  241 (241)
T ss_dssp             CSSCEEEEEEEETTCCCCEECBCCTTTCEEEECSSCCCSCEEEEEEE-SSSCEEEEEEEECSSCCSSEEEEC-
T ss_pred             CCCCEEEEEEEeCCCCCeEECccCcCcEEEeCCCCCCCCCEEEEEEE-eCCcEEEEccccCCCCCCCCEEeCC
Confidence            8889999999997 468999999999999998754578899999999 9999999999999999999999974

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A

Probab=100.00  E-value=5e-54  Score=377.19  Aligned_cols=197  Identities=22%  Similarity=0.302  Sum_probs=178.6

Q ss_pred             CCCeeEEEEEEeCCCCCCCCCcCcCCCCCCCCCCCCCCeEEEeCccccCCC----CcCCcEEEEEECCCCCCCCCcEEEE
Q 024303           38 GTHWSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSG----KECGACYQVKCTRHPACSGKAVRVV  113 (269)
Q Consensus        38 ~~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g----~~CG~C~~V~c~~~~~C~g~sv~V~  113 (269)
                      -.+.+.|+||||+...    .+||||+..    .|++.++||++..+|++|    +.||+||||+|.      +++|+|+
T Consensus         3 ~~~~~~G~aT~Y~~g~----~~GACG~~~----~~~~~~~aAls~~~f~~G~~~~~~CG~c~~v~~~------~gsv~V~   68 (208)
T 3d30_A            3 YDDLHEGYATYTGSGY----SGGAFLLDP----IPSDMEITAINPADLNYGGVKAALAGSYLEVEGP------KGKTTVY   68 (208)
T ss_dssp             TTCCEEEEEEECSTTS----SSCTTCCCC----CCTTCCEEEECHHHHTGGGCTTTTTTCEEEEEET------TEEEEEE
T ss_pred             CCCcEEEEEEEcCCCC----CCCcCCCCC----CCCCCEEEEeCHHHhCCCCcCccccCCEEEEEeC------CCcEEEE
Confidence            3567899999999853    489999875    367889999999999987    899999999983      4689999


Q ss_pred             EeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccccCceeeeEEEEEecCCCCceEEEEEccCCCCceeEEEEEEecC
Q 024303          114 ITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSGRNIAFHVDQGSNPNYLAVVVEFEDG  193 (269)
Q Consensus       114 V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g~ni~~~v~~Gss~~w~av~v~n~~g  193 (269)
                      |+|+||+  |.  ..|||||++||.+|+.       ++.|+++|+||+|+|+++| +|+|++++|||+||++|||.|+++
T Consensus        69 v~D~CP~--C~--~~~~DLS~~aF~~la~-------~~~G~i~v~~~~V~C~~~G-~i~f~v~~Gs~~~~~~v~v~n~~g  136 (208)
T 3d30_A           69 VTDLYPE--GA--RGALDLSPNAFRKIGN-------MKDGKINIKWRVVKAPITG-NFTYRIKEGSSRWWAAIQVRNHKY  136 (208)
T ss_dssp             EEEECTT--CC--TTCEEECHHHHHHHSC-------GGGSSEEEEEEEECCCCCS-CCEEEECTTCSSSEEEEEEESCSS
T ss_pred             EEECCCC--CC--CCeEECCHHHHHHhcc-------cCCCEEEEEEEEeCCCCCC-ceeEEEcCCCCCceEEEEEEecCC
Confidence            9999998  96  7999999999999997       6899999999999999999 999999999999999999999987


Q ss_pred             CCceeEEEEEcCCCceEEcccccCceeeeCCCCCCCCCeEEEEEEeeCCeEEEEcccccCCCCC----CcEEecCcccc
Q 024303          194 DGDLAGVDVKEGSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVANNVIPQGWMP----GATYRSLVNYN  268 (269)
Q Consensus       194 ~g~I~sVei~~~~~~W~~m~r~~g~~W~~~~~~~~~gp~~~RiTs~~~G~~v~~~nvip~~~~~----G~~y~t~~qF~  268 (269)
                        +|++|||+++ ++|++|+|+|+|+|..+.  ++.+|++||||+ .+||+|  .++||++|++    +.+||+++||+
T Consensus       137 --~v~~v~i~~~-~~W~~m~r~~~n~~~~~~--~~~~pls~rvT~-~~G~~v--~~vip~~w~~~~~~~~~~~~~~Qf~  207 (208)
T 3d30_A          137 --PVMKMEYEKD-GKWINMEKMDYNHFVSTN--LGTGSLKVRMTD-IRGKVV--KDTIPKLPESGTSKAYTVPGHVQFP  207 (208)
T ss_dssp             --CEEEEEEEET-TEEEEEEECTTSCEEEEC--CCSSSEEEEEEE-TTCCEE--EEEECCCCSSCCSSCEEEECCCCCC
T ss_pred             --CEEEEEEecC-CcEEEccccccceeecCC--CCCCCEEEEEEE-CCCCEE--EEEECCCCccCcccceEEeCcCccC
Confidence              9999999985 789999999998776542  567899999999 999999  7899999997    89999999996

>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A

Probab=99.96  E-value=3.9e-29  Score=195.13  Aligned_cols=97  Identities=26%  Similarity=0.548  Sum_probs=91.7

Q ss_pred             ceEEEEEccCCCCceeEEEEEEecCCCceeEEEEEcCCC-ceEEcccccCceeeeCCCCCCCCCeEEEEEEeeCCeEEEE
Q 024303          169 RNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEGSG-EWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVA  247 (269)
Q Consensus       169 ~ni~~~v~~Gss~~w~av~v~n~~g~g~I~sVei~~~~~-~W~~m~r~~g~~W~~~~~~~~~gp~~~RiTs~~~G~~v~~  247 (269)
                      .+|+|+|++|+++||++|+|.|++|+|+|++||||++++ .|++|+| ||++|+++++.++.+||+||||+ .+|+++++
T Consensus         2 ~~i~F~V~~gs~~~~l~vlv~nv~G~gdI~~V~ik~s~t~~W~~M~r-wGa~W~~~s~~~l~GplSfRvt~-~~G~~~v~   79 (100)
T 3ft1_A            2 VQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTK-KGNVWEVKSSKPLVGPFNFRFMS-KGGMRNVF   79 (100)
T ss_dssp             BEEEEEECTTCBTTEEEEEEEEECTTCCEEEEEEECTTCCCCEECEE-ETTEEEEECSSCCCSSEEEEEEE-TTCCEEEE
T ss_pred             CCEEEEEecCCCcceEEEEEEEcCCCccEEEEEEEeCCCCCeEEecc-cCCEeEeCCCCCCCCCEEEEEEE-cCCcEEEE
Confidence            379999999999999999999999999999999999854 7999999 99999998755788999999999 99999999


Q ss_pred             cccccCCCCCCcEEecCccc
Q 024303          248 NNVIPQGWMPGATYRSLVNY  267 (269)
Q Consensus       248 ~nvip~~~~~G~~y~t~~qF  267 (269)
                      .||||++|++|++|++.+||
T Consensus        80 ~nViPa~W~~G~ty~s~vq~   99 (100)
T 3ft1_A           80 DEVIPTAFSIGKTYKPEEQE   99 (100)
T ss_dssp             EEEECTTCCTTCEECCCCBC
T ss_pred             CeEeCCCCCCCcEEeccccc
Confidence            99999999999999999997

>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1

Probab=99.95  E-value=1.5e-28  Score=208.25  Aligned_cols=116  Identities=28%  Similarity=0.444  Sum_probs=97.8

Q ss_pred             CCeeEEEEEEeCCCCCCCCCcCcCCCCCC----CCCCCCCCeEEEeCccccCCC------CcCCcEEEEEECCCC-----
Q 024303           39 THWSTAGATWYGSPDGAGSDGGACGYGNA----VSQSPFSSFVTAIGPSLYKSG------KECGACYQVKCTRHP-----  103 (269)
Q Consensus        39 ~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~----~~~~p~~~~~aA~s~~~~~~g------~~CG~C~~V~c~~~~-----  103 (269)
                      .+|..++||||++.     ++|||||+.+    +++++++.++||+|+++|++|      +.||+||||+|++.+     
T Consensus        12 ~g~~~A~aT~Yg~~-----~gGACGyG~~~~~~l~~~gyg~~tAALStaLFn~G~~~w~G~~CG~Cyel~c~~~~c~~cg   86 (181)
T 1wc2_A           12 NGKSCASTTNYHDS-----HKGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTTGGYVPGQG   86 (181)
T ss_dssp             TTEEEEEEEEECCC-----BCTTTTCSCSSSSBCCSSGGGSCEEEEEHHHHCTTCCSSSCTTTTCEEEEEEEEEECTTSC
T ss_pred             CCccccceeEecCC-----CCcccCcCcCCCCCccccCCcceeeecCHHHhCCCccccccccCCCcEEEEcCCCCccccc
Confidence            45999999999985     4899999931    455678899999999999997      899999999997632     


Q ss_pred             -CC-CCCcEEEEEeecCCC-----CCCCCC-----------CCcEEcChHHHhhcccCCcccccccCceeeeEEEEEecC
Q 024303          104 -AC-SGKAVRVVITDFCPG-----GPCVSE-----------SAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACD  165 (269)
Q Consensus       104 -~C-~g~sv~V~V~D~Cp~-----~~C~~~-----------~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~  165 (269)
                       .| .+++|+|+|||+||.     +||.++           +.||||+.+| .+|+.       ...|+++|+||+|+|+
T Consensus        87 ~~~~~g~SI~VtaTN~CPpn~~nggWCn~pp~~~~~n~~G~~~HFDLs~pa-~~Ia~-------~~~GivpV~yrrV~C~  158 (181)
T 1wc2_A           87 GPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLENGR-SQVTG-------MGWNNPETTWEVVNCD  158 (181)
T ss_dssp             CCCCTTCEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEECTT-STTGG-------GTCSSEEEEEEEECHH
T ss_pred             ccCCCCCeEEEEEecCCCCCCCCCCccCCCcccCcccccCccccccccchH-HHhhh-------hcCCCceeEEEEEeCC
Confidence             12 367999999999993     499653           6899999999 89987       6789999999999999


Q ss_pred             CC
Q 024303          166 YS  167 (269)
Q Consensus       166 ~~  167 (269)
                      ..
T Consensus       159 ~~  160 (181)
T 1wc2_A          159 SE  160 (181)
T ss_dssp             HH
T ss_pred             CC
Confidence            73

>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}

Probab=99.95  E-value=3e-27  Score=186.53  Aligned_cols=97  Identities=29%  Similarity=0.606  Sum_probs=90.8

Q ss_pred             CCceEEEEEccCCCCceeEEEEEEecCCCceeEEEEEc-CCCceEEcccccCceeeeCCCCCCCCCeEEEEEEeeCCeEE
Q 024303          167 SGRNIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKE-GSGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTL  245 (269)
Q Consensus       167 ~g~ni~~~v~~Gss~~w~av~v~n~~g~g~I~sVei~~-~~~~W~~m~r~~g~~W~~~~~~~~~gp~~~RiTs~~~G~~v  245 (269)
                      .|.||.|+|++++++||++|+|.|++|+|+|++||||+ +++.|++|+|+ |++|+++++.+|.+||+||||+ .+|+++
T Consensus        11 ~g~~v~f~V~~~snp~~l~VlV~nv~G~GdI~~V~Ik~~~~~~W~~M~rn-Ga~W~~~s~~~L~GplSfRvtt-s~G~~~   88 (108)
T 2jnz_A           11 SAVQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKK-GNVWEVKSSKPLVGPFNFRFMS-KGGMRN   88 (108)
T ss_dssp             CCCEEEEEECTTCCSSEEEEEEEEEBTTBCEEEEEEECTTCCCCEECEEE-TTEEEEECSSCCCSSEEEEEEE-TTTEEE
T ss_pred             CCccEEEEEecCCCccEEEEEEEEeCCCCCEEEEEEEeCCCCcEeEcccc-CCEeEeCCCCCCCCCEEEEEEE-cCCcEE
Confidence            46799999999999999999999999999999999997 47789999999 9999998755688999999999 999999


Q ss_pred             EEcccccCCCCCCcEEecCc
Q 024303          246 VANNVIPQGWMPGATYRSLV  265 (269)
Q Consensus       246 ~~~nvip~~~~~G~~y~t~~  265 (269)
                      ++.||||++|++|++|++.+
T Consensus        89 va~nViPa~W~~Gqty~s~v  108 (108)
T 2jnz_A           89 VFDEVIPTAFSIGKTYKPEE  108 (108)
T ss_dssp             EEEEEECSSCCTTCEECCCC
T ss_pred             EECeEECCCCCCCCEEeCCC
Confidence            99999999999999999864

>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A

Probab=99.92  E-value=3e-27  Score=183.32  Aligned_cols=93  Identities=33%  Similarity=0.640  Sum_probs=85.9

Q ss_pred             eEEEEEccCCCCceeEEEEEEecCCCceeEEEEEcC-CCceEEcccccCceeeeCCCCCCCCCeEEEEEEeeCCeEEEEc
Q 024303          170 NIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEG-SGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVAN  248 (269)
Q Consensus       170 ni~~~v~~Gss~~w~av~v~n~~g~g~I~sVei~~~-~~~W~~m~r~~g~~W~~~~~~~~~gp~~~RiTs~~~G~~v~~~  248 (269)
                      +|+|+|++||++||++|+|.|++  |+|++||||++ ++.|++|+|+||++|+++++.+|.+||+||||+ .+|+++++.
T Consensus         3 ~i~F~V~~gs~~~~l~vlv~nv~--gdI~~V~ik~~~~~~W~~M~r~wGa~W~~~~~~~L~GplSfRvt~-~~G~~~v~~   79 (96)
T 1bmw_A            3 KVTFTVEKGSNEKHLAVLVKYEG--DTMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGPFNFRFLT-EKGMKNVFD   79 (96)
T ss_dssp             CCCCCCCTTCSSSBCCBCCCCSS--SCCCCCEECCSSSSSCEECBCCSSSSBBCBCCSSCCCCCCBCCEE-TTTEECCBS
T ss_pred             CEEEEEecCCCCceEEEEEEEeC--CCEEEEEEEECCCCcEEECccCcCceeEeCCCCCCCCCEEEEEEE-cCCcEEEEe
Confidence            69999999999999999999998  59999999995 778999999999999998754588999999999 999999999


Q ss_pred             ccccCCCCCCcEEecCc
Q 024303          249 NVIPQGWMPGATYRSLV  265 (269)
Q Consensus       249 nvip~~~~~G~~y~t~~  265 (269)
                      ||||++|++|++|++.+
T Consensus        80 nViP~~W~~G~ty~~~~   96 (96)
T 1bmw_A           80 DVVPEKYTIGATYAPEE   96 (96)
T ss_dssp             SCSCSSCCSSSCCCC--
T ss_pred             eEeCCCCCCCCEEeCCC
Confidence            99999999999999863

>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A

Probab=99.67  E-value=3.1e-17  Score=132.06  Aligned_cols=74  Identities=28%  Similarity=0.493  Sum_probs=60.6

Q ss_pred             EEeCcccc-CCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcC-hHHHhhcccCCcccccccCcee
Q 024303           78 TAIGPSLY-KSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLS-GTAFGAMAIPGQEEKLRDAGVL  155 (269)
Q Consensus        78 aA~s~~~~-~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs-~~AF~~ia~~~~~~~~~~~G~~  155 (269)
                      .|+..+.. ++++.||+|++|++..    ++++|+|+|+|+||.  |     +|||| ++||++|+.++.+   ++.|++
T Consensus        49 tA~~g~~gp~~g~~CG~cv~Vtn~~----nGksV~V~VvD~CP~--g-----gLDLS~~~AF~~Ia~~g~G---~~~G~i  114 (125)
T 1bw3_A           49 TAFCGPAGPRGQAACGKCLRVTNPA----TGAQITARIVDQCAN--G-----GLDLDWDTVFTKIDTNGIG---YQQGHL  114 (125)
T ss_dssp             EESCSTTCCCSGGGTTCEEEEEETT----TTEEEEEEEEECCSS--S-----SCCSCSSSSHHHHCSSCHH---HHHSEE
T ss_pred             eEeccCCCCCCCcccCCEEEeEeCC----CCCEEEEEEEEeCCC--C-----CCCCCCHHHHHHHhccCCc---ccCcEE
Confidence            44433333 7789999999999754    378999999999996  4     39999 9999999975432   578999


Q ss_pred             eeEEEEEecC
Q 024303          156 EVRYARVACD  165 (269)
Q Consensus       156 ~i~wr~V~C~  165 (269)
                      +|+|++|+|+
T Consensus       115 ~V~w~~V~C~  124 (125)
T 1bw3_A          115 NVNYQFVDCR  124 (125)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEEeCC
Confidence            9999999997

>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}

Probab=99.28  E-value=3.3e-11  Score=92.55  Aligned_cols=92  Identities=26%  Similarity=0.254  Sum_probs=73.7

Q ss_pred             eEEEEEEeCCC-CCCCCCcCcCCCCCCCCCCCCCCeEEEeCccccCCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCC
Q 024303           42 STAGATWYGSP-DGAGSDGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPG  120 (269)
Q Consensus        42 ~~G~aT~Yg~~-~~~g~~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~  120 (269)
                      ..|.|+||+.. .+   ...|||-..     ....++||..+      .-||..++|+...    ++++|+|+|.|+||-
T Consensus         2 ~~G~ASwYg~~f~G---~~TA~Ge~~-----~~~~~tAAH~t------lP~gt~vrVtNl~----nGksVvVrVnDRGP~   63 (95)
T 4avr_A            2 DTGEASYYGSRHAG---LRTASGERY-----NPNAMTAAHRT------LPFGARVRVTNLD----NRRSVVVRINDRGPF   63 (95)
T ss_dssp             EEEEEEECCGGGTT---SBCTTSCBC-----CTTSCEEECSS------SCTTCEEEEEETT----TCCEEEEEEEECCCC
T ss_pred             CEEEEEEECCccCC---CCCCCccCc-----CCCCCEEEcCC------CCCCcEEEEEECC----CCcEEEEEEccCCCC
Confidence            47999999963 22   267887443     12457888764      4699999999654    489999999999997


Q ss_pred             CCCCCCCCcEEcChHHHhhcccCCcccccccCceeeeEEEEE
Q 024303          121 GPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARV  162 (269)
Q Consensus       121 ~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V  162 (269)
                        |.  ...+|||+.||++|+.       .+.|+.+|+|+.+
T Consensus        64 --~~--griIDLS~aAa~~Lg~-------~~~G~~~V~ve~~   94 (95)
T 4avr_A           64 --RR--GRIIDVSRKAAEGLGM-------IRSGVAPVRIESL   94 (95)
T ss_dssp             --ST--TEEEEECHHHHHHHTC-------TTTSCEEEEEEEC
T ss_pred             --CC--CCEEEeCHHHHHHhCC-------cCCCEEEEEEEEe
Confidence              76  5789999999999987       6899999999986

>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani}

Probab=98.13  E-value=1.1e-05  Score=64.89  Aligned_cols=72  Identities=25%  Similarity=0.431  Sum_probs=57.0

Q ss_pred             CCCCeEEEeCc-cccCCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccc
Q 024303           72 PFSSFVTAIGP-SLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLR  150 (269)
Q Consensus        72 p~~~~~aA~s~-~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~  150 (269)
                      |.-..+.+... .-|+ +..||.|+||+-.     ++++|.|+.+|.-+        +.|+++.+||++|.+.      .
T Consensus        47 p~FP~IGga~~iagWN-S~~CGtC~~lty~-----ng~sI~vlaID~A~--------~gFnIs~~Amn~LT~G------~  106 (129)
T 2kqa_A           47 PGFPNVGGIPDIAGWD-SPSCGTCWKVTIP-----NGNSIFIRGVDSGR--------GGFNVNPTAFTKLVGS------T  106 (129)
T ss_dssp             SCSSSEEEETTCCSTT-CTTCSCEEEEEET-----TTEEEEEEEEEECS--------SSEEECHHHHHHHHSS------S
T ss_pred             CCCCeeccchhhccCC-CCCCCceEEEEEc-----CCCEEEEEEEccCC--------CceeehHHHHHHhcCC------c
Confidence            33344555543 4576 7999999999963     27899999999964        3599999999999974      5


Q ss_pred             cCcee-eeEEEEEe
Q 024303          151 DAGVL-EVRYARVA  163 (269)
Q Consensus       151 ~~G~~-~i~wr~V~  163 (269)
                      ..|++ +++|++|+
T Consensus       107 ~lG~V~~a~~~qV~  120 (129)
T 2kqa_A          107 EAGRVDNVNYVQVD  120 (129)
T ss_dssp             SSCCBCSCEEEECC
T ss_pred             ccCcEeEEEEEEcC
Confidence            68999 99999986

>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens}

Probab=98.08  E-value=1.3e-05  Score=63.88  Aligned_cols=71  Identities=18%  Similarity=0.471  Sum_probs=54.8

Q ss_pred             CeEEEeCc-cccCCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccccCc
Q 024303           75 SFVTAIGP-SLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAG  153 (269)
Q Consensus        75 ~~~aA~s~-~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G  153 (269)
                      ..+.+... .-| ++..||.|+|++-.      +++|.|+.+|.-+        ..|+++.+||+.|.+ |++   ...|
T Consensus        44 P~IGg~~~i~gw-ns~~CGtC~~lty~------g~si~vlaID~a~--------~Gfnis~~A~n~LT~-G~a---~~lG  104 (120)
T 3m3g_A           44 PYIGGAAAVAGW-NSASCGTCWKLQYS------GHTIYVLAVDHAA--------SGFNIALDAMNALTG-GQA---VQLG  104 (120)
T ss_dssp             TSEEEETTCCST-TCTTTTCEEEEEET------TEEEEEEEEEECS--------SSEEECHHHHHHHHT-SCH---HHHC
T ss_pred             CccccccccccC-CCCCCCceEEEEEC------CeEEEEEEEecCC--------CceeecHHHHHHhhC-Ccc---eeee
Confidence            34555443 456 45899999999963      6899999999964        359999999999995 322   3459


Q ss_pred             eeeeEEEEEec
Q 024303          154 VLEVRYARVAC  164 (269)
Q Consensus       154 ~~~i~wr~V~C  164 (269)
                      +|+++|++|+=
T Consensus       105 ~V~a~~~~V~~  115 (120)
T 3m3g_A          105 RVSATATQVPV  115 (120)
T ss_dssp             EEECEEEEECG
T ss_pred             eEeEEEEEcCH
Confidence            99999999973

>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa}

Probab=98.05  E-value=1.2e-05  Score=64.15  Aligned_cols=71  Identities=27%  Similarity=0.464  Sum_probs=55.1

Q ss_pred             EEEeCc-cccCCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccccCcee
Q 024303           77 VTAIGP-SLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVL  155 (269)
Q Consensus        77 ~aA~s~-~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~  155 (269)
                      +.+... .-|++ ..||.|+|++-.+    .+++|.|..+|.-+        ..|+|+.+||+.|.+. ++   ...|++
T Consensus        46 IGg~~~V~gwnS-~~CGtC~~lty~~----~g~si~vlaID~a~--------~Gfnis~~Amn~LT~G-~a---~~lG~V  108 (122)
T 3sul_A           46 VGAVDTITGWNS-ESCGTCYQITWSG----TGKTIHVVGVDVAG--------NGFNVGQRAMDDLTNG-QA---VALGNI  108 (122)
T ss_dssp             EEEETTCCSTTC-TTTTCEEEEEETT----TTEEEEEEEEEECS--------SSEEECHHHHHHHHTS-CH---HHHSEE
T ss_pred             cccccccccCCC-CCCCceEEEEEcC----CCcEEEEEEEecCC--------CceeehHHHHHHhcCC-cc---eecceE
Confidence            544443 45655 9999999999642    36899999999965        3499999999999963 22   346999


Q ss_pred             eeEEEEEec
Q 024303          156 EVRYARVAC  164 (269)
Q Consensus       156 ~i~wr~V~C  164 (269)
                      +++|++|+=
T Consensus       109 ~a~~~qV~~  117 (122)
T 3sul_A          109 DVTATLVDK  117 (122)
T ss_dssp             EEEEEEECG
T ss_pred             eEEEEEcCH
Confidence            999999973

>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=97.95  E-value=1.7e-05  Score=63.66  Aligned_cols=75  Identities=19%  Similarity=0.381  Sum_probs=55.9

Q ss_pred             CeEEEeCc-cccCCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccccCc
Q 024303           75 SFVTAIGP-SLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAG  153 (269)
Q Consensus        75 ~~~aA~s~-~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G  153 (269)
                      .++.+... .-|+ +..||.|+|++-.++.  .+++|.|..+|.-+        ..|+|+.+||+.|.+. ++   ...|
T Consensus        45 P~IGg~~~i~gwn-S~~CGtC~~lty~g~~--~~~si~vlaID~a~--------~Gfnis~~Amn~LT~G-~a---~~lG  109 (125)
T 3suk_A           45 PHIGASSDIGGFN-SPACGNCYTISFTFQG--VTRSINLVAIDHAG--------NGFNVAQAAMDELTNG-NA---VALG  109 (125)
T ss_dssp             TSEEEETTCCSTT-CTTTTCEEEEEEEETT--EEEEEEEEEEEECS--------SSEEECHHHHHHHHTS-CH---HHHC
T ss_pred             CeeccccccccCC-CCCCCeeEEEEEcCCC--cceEEEEEEEecCC--------CceeecHHHHHHhcCC-cc---cccc
Confidence            34555543 4564 5899999999974331  23899999999964        3499999999999963 22   3459


Q ss_pred             eeeeEEEEEec
Q 024303          154 VLEVRYARVAC  164 (269)
Q Consensus       154 ~~~i~wr~V~C  164 (269)
                      +|+++|++|+=
T Consensus       110 ~V~~~~~~V~~  120 (125)
T 3suk_A          110 TIDVQSQQVAR  120 (125)
T ss_dssp             EEEEEEEEECG
T ss_pred             eEeEEEEEcCH
Confidence            99999999973

>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=97.91  E-value=3e-05  Score=62.31  Aligned_cols=76  Identities=20%  Similarity=0.371  Sum_probs=55.8

Q ss_pred             CeEEEeC-ccccCCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccccCc
Q 024303           75 SFVTAIG-PSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAG  153 (269)
Q Consensus        75 ~~~aA~s-~~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G  153 (269)
                      ..+.+.. -.-|+ +..||.|+|++..++. -..++|.|..+|.-++        .|+|+.+||+.|.+. ++   ...|
T Consensus        44 P~IGg~~~i~gwn-s~~CGtC~~lty~g~~-~~~~si~vlaID~a~~--------Gfnis~~Amn~LT~g-~a---~~lG  109 (127)
T 3suj_A           44 PCIGGSSDIAGYN-SPNCGSCYQLTYSSAH-TTPKSIYMVAIDRSAE--------GFTASKQAMDDLTNK-RA---EELG  109 (127)
T ss_dssp             TSEEEETTCCSTT-CTTTTCEEEEEECCSS-SCCEEEEEEEEEECSS--------SEEECHHHHHHHHTS-CH---HHHS
T ss_pred             CeeccccccccCC-CCCCCceEEEEECCCC-CcceEEEEEEEecCCC--------ceeecHHHHHHhcCC-cc---ccce
Confidence            3455543 34464 5899999999975321 1237999999999653        499999999999963 22   3568


Q ss_pred             eeeeEEEEEec
Q 024303          154 VLEVRYARVAC  164 (269)
Q Consensus       154 ~~~i~wr~V~C  164 (269)
                      +|+++|++|+-
T Consensus       110 ~V~~~~~~V~~  120 (127)
T 3suj_A          110 TVNVDVRKVDF  120 (127)
T ss_dssp             SEEEEEEEECG
T ss_pred             eEEEEEEEeCH
Confidence            99999999974

>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa}

Probab=97.83  E-value=5.4e-05  Score=61.21  Aligned_cols=75  Identities=16%  Similarity=0.219  Sum_probs=55.6

Q ss_pred             CeEEEeCccccCCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccccCce
Q 024303           75 SFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGV  154 (269)
Q Consensus        75 ~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~  154 (269)
                      -.+.+..   | ++..||.|+|++..      +++|.|..+|.-.+      ..-|||+.+||+.|.+...+.+-...|+
T Consensus        48 P~igg~~---w-ns~~CGtCwkLtY~------G~sI~vlaID~a~~------g~~FnIs~~Amn~LT~G~~a~~a~elG~  111 (136)
T 3sum_A           48 PHFVAAP---E-AQTECGSCWKLRYK------GNHAFVTVVDRVEE------ANLFVGGTDLVKNLTTFNGAPEGYDWGT  111 (136)
T ss_dssp             TSEEECC---B-TTBCTTCEEEEEET------TEEEEEEEEECCCS------TTEEEECHHHHHHHTCBTTBCHHHHHSE
T ss_pred             Ccccccc---c-CCCCCCceEEEEEC------CeEEEEEEEecCCC------cceEeehHHHHHHHhCCCccccceecce
Confidence            3466655   5 56899999999963      68999999999643      1239999999999986311111245799


Q ss_pred             eee-EEEEEecC
Q 024303          155 LEV-RYARVACD  165 (269)
Q Consensus       155 ~~i-~wr~V~C~  165 (269)
                      |++ +|++|+=.
T Consensus       112 Vda~~~~qVd~S  123 (136)
T 3sum_A          112 AQLFSAYQVDGS  123 (136)
T ss_dssp             EECSEEEEECGG
T ss_pred             eeeeEEEEcCHH
Confidence            999 99999743

>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A

Probab=95.18  E-value=0.014  Score=50.34  Aligned_cols=53  Identities=28%  Similarity=0.322  Sum_probs=35.3

Q ss_pred             EEEeCccccCCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcCh
Q 024303           77 VTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSG  134 (269)
Q Consensus        77 ~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs~  134 (269)
                      +||.+..--.....|++||+++=++. ...||+.+|+|++...+    -..+||||..
T Consensus        72 FaA~~~~g~~e~~~Cc~C~~LtFt~~-~~~GKkmiVQ~TNtG~D----l~~n~FDl~i  124 (210)
T 2eng_A           72 FAATSIAGSNEAGWCCACYELTFTSG-PVAGKKMVVQSTSTGGD----LGSNHFDLNI  124 (210)
T ss_dssp             EEEEECTTCCHHHHTTCEEEEEECSG-GGTTCEEEEEEEEC---------CCEEEEEC
T ss_pred             eeeeeccCCccccccceeEEEEEcCC-CcCCCEEEEEEecccCC----CCCCceeEec
Confidence            56665332222467999999997653 24689999999999875    3379999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1n10a2	143	b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t	3e-43
d1n10a1	95	b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T	2e-39
d1whoa_	94	b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten	8e-36
d1wc2a1	180	b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu	5e-25

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score =  142 bits (358), Expect = 3e-43
 Identities = 65/142 (45%), Positives = 82/142 (57%), Gaps = 6/142 (4%)

Query: 29  PKHLNLSAVGTHWSTAGATWYGSPDGAGSD--GGACGYGNAVSQSPFSSFVTAIGPSLYK 86
           P     +  G  W  A +TWYG P GAG    GGACGY + V + PFS         ++K
Sbjct: 5   PGPNITATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKD-VDKPPFSGMTGCGNTPIFK 63

Query: 87  SGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQE 146
           SG+ CG+C+++KCT+  ACSG+ V V ITD            HFDLSG AFGAMA  G E
Sbjct: 64  SGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIA---PYHFDLSGHAFGAMAKKGDE 120

Query: 147 EKLRDAGVLEVRYARVACDYSG 168
           +KLR AG LE+++ RV C Y  
Sbjct: 121 QKLRSAGELELQFRRVKCKYPE 142

>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 1 C-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score =  130 bits (329), Expect = 2e-39
 Identities = 40/95 (42%), Positives = 65/95 (68%), Gaps = 2/95 (2%)

Query: 170 NIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKE-GSGEWRAMQQSWGATWKLNAGSEL 228
            + FHV++GSNPNYLA++V++ +GDGD+  VD+KE G  +W  +++SWGA W+++   +L
Sbjct: 2   KVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKL 61

Query: 229 HPPLSLRLTSQYSGQTLVANNVIPQGWMPGATYRS 263
             P ++R T++  G    A +VIP+GW    +Y S
Sbjct: 62  TGPFTVRYTTE-GGTKTEAEDVIPEGWKADTSYES 95

>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 2
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score =  121 bits (305), Expect = 8e-36
 Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 171 IAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKE-GSGEWRAMQQSWGATWKLNAGSELH 229
           + F V++GSN  +LAV+V++E        V+++E GS EW AM +  G  W  ++   L 
Sbjct: 4   VTFTVEKGSNEKHLAVLVKYEGDTMAE--VELREHGSDEWVAMTKGEGGVWTFDSEEPLQ 61

Query: 230 PPLSLRLTSQYSGQTLVANNVIPQGWMPGATY 261
            P + R  ++  G   V ++V+P+ +  GATY
Sbjct: 62  GPFNFRFLTE-KGMKNVFDDVVPEKYTIGATY 92

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

 Score = 95.9 bits (238), Expect = 5e-25
 Identities = 34/161 (21%), Positives = 44/161 (27%), Gaps = 46/161 (28%)

Query: 41  WSTAGATWYGSPDGAGSDGGACGYGNAVSQSPFS----SFVTAIGPSLYKS------GKE 90
            S A  T Y          GACG G A   + F     SFV A     + S      G+ 
Sbjct: 14  KSCASTTNYHDS-----HKGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQH 68

Query: 91  CGACYQVKCTRHPAC-------SGKAVRVVITDFCP----------------GGPCVSES 127
           CG C ++  T             G +   +IT+ CP                G       
Sbjct: 69  CGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYE 128

Query: 128 AHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSG 168
            H DL       +               E  +  V CD   
Sbjct: 129 LHLDLEN-GRSQVTG-------MGWNNPETTWEVVNCDSEH 161

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1n10a2	143	Pollen allergen PHL P 1 N-terminal domain {Timothy	100.0
d1wc2a1	180	Endoglucanase (CMCase) {Blue mussel (Mytilus eduli	99.97
d1n10a1	95	PHL P 1 C-terminal domain {Timothy grass (Phleum p	99.96
d1whoa_	94	PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1	99.94
d1bw3a_	125	Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}	98.91
d2enga_	210	Endoglucanase V (Eng V) {Humicola insolens [TaxId:	93.7

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=1.2e-37  Score=256.46  Aligned_cols=133  Identities=48%  Similarity=0.920  Sum_probs=113.5

Q ss_pred             CccccCCCCeeEEEEEEeCCCCCCCC--CcCcCCCCCCCCCCCCCCeEEEeCccccCCCCcCCcEEEEEECCCCCCCCCc
Q 024303           32 LNLSAVGTHWSTAGATWYGSPDGAGS--DGGACGYGNAVSQSPFSSFVTAIGPSLYKSGKECGACYQVKCTRHPACSGKA  109 (269)
Q Consensus        32 ~~~~~~~~~~~~G~aT~Yg~~~~~g~--~~GaCGy~~~~~~~p~~~~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~g~s  109 (269)
                      ...+++.++|++|+||||+++++.++  .+|||||++ +...|++.++||+|+.+|++|..||+||||+|.++..|.+++
T Consensus         8 ~~~a~~~~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~-~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~~~~c~~~s   86 (143)
T d1n10a2           8 NITATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKD-VDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGEP   86 (143)
T ss_dssp             CCCCBCCCSCEEEEEEEEC----------CCTTCCCC-TTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSSTTBCSCC
T ss_pred             CcccccCCCcEeeEEeEeCCCCCCCCCCCcccCCCCC-cccCCCcceEEEeCHhHccCCCcCCcceEeEcCCCCcccCCC
Confidence            33447889999999999998887654  379999998 667789999999999999999999999999999888899999


Q ss_pred             EEEEEeecCCCCCCCCCCCcEEcChHHHhhcccCCcccccccCceeeeEEEEEecCCCC
Q 024303          110 VRVVITDFCPGGPCVSESAHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACDYSG  168 (269)
Q Consensus       110 v~V~V~D~Cp~~~C~~~~~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~~~g  168 (269)
                      |+|+|||.||+  | .+.+|||||++||.+||+++++.++++.|+++|+||+|+|+++|
T Consensus        87 v~V~vtd~c~~--~-~~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~g  142 (143)
T d1n10a2          87 VVVHITDDNEE--P-IAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPE  142 (143)
T ss_dssp             EEEEEEEECSS--C-SSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCT
T ss_pred             EEEEEEecccC--C-CCCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCC
Confidence            99999999995  3 33689999999999999987777788999999999999999987

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=99.97  E-value=1.6e-32  Score=231.86  Aligned_cols=130  Identities=29%  Similarity=0.437  Sum_probs=106.3

Q ss_pred             CCeeEEEEEEeCCCCCCCCCcCcCCCCCCCCCCC----CCCeEEEeCccccCC------CCcCCcEEEEEECCCCCC---
Q 024303           39 THWSTAGATWYGSPDGAGSDGGACGYGNAVSQSP----FSSFVTAIGPSLYKS------GKECGACYQVKCTRHPAC---  105 (269)
Q Consensus        39 ~~~~~G~aT~Yg~~~~~g~~~GaCGy~~~~~~~p----~~~~~aA~s~~~~~~------g~~CG~C~~V~c~~~~~C---  105 (269)
                      ..|+.+++|||+.++     +|||||+++....|    ++.++||+|+.+|++      |+.||+||||||++...|   
T Consensus        12 ~g~~~A~aT~Ygd~~-----~GACGyG~~~~~~~~~~g~G~~tAAlS~~lf~~~~~~~~G~~CG~CyeV~C~~~~~~~~~   86 (180)
T d1wc2a1          12 NGKSCASTTNYHDSH-----KGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTTGGYVPGQG   86 (180)
T ss_dssp             TTEEEEEEEEECCCB-----CTTTTCSCSSSSBCCSSGGGSCEEEEEHHHHCTTCCSSSCTTTTCEEEEEEEEEECTTSC
T ss_pred             CCccccceEEeCCCC-----CCCCCCCcCCCCCccccCCcceEeeccHHHhcCCcccccccccCCEEEEEECCCCCCccC
Confidence            479999999999754     79999999533333    458999999999999      899999999999864322   


Q ss_pred             ----CCCcEEEEEeecCCC-----CCCCCCC-----------CcEEcChHHHhhcccCCcccccccCceeeeEEEEEecC
Q 024303          106 ----SGKAVRVVITDFCPG-----GPCVSES-----------AHFDLSGTAFGAMAIPGQEEKLRDAGVLEVRYARVACD  165 (269)
Q Consensus       106 ----~g~sv~V~V~D~Cp~-----~~C~~~~-----------~~lDLs~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~  165 (269)
                          .+++|+|||||+||.     +||.+++           .||||+ ++|.+|+.       ...|+|+|+||+|+|+
T Consensus        87 ~~~~~g~sV~V~iTd~CP~n~~n~gWCn~p~~~~~~n~~g~~~HFDLs-~af~~ia~-------~~~G~v~V~yrrV~C~  158 (180)
T d1wc2a1          87 GPVREGLSKTFMITNLCPNIYPNQDWCNQGSQYGGHNKYGYELHLDLE-NGRSQVTG-------MGWNNPETTWEVVNCD  158 (180)
T ss_dssp             CCCCTTCEEEEEEEEEECSSTTSTTTSCCSSSSSCCCTTSCSEEEEEE-CTTSTTGG-------GTCSSEEEEEEEECHH
T ss_pred             CCCCCCCcEEEEEEecCCCCCCCCCccCCccccccccccCcccceech-HHHHHHhh-------hcCCcceeEEEEeeCC
Confidence                367999999999995     3997543           399997 59999998       7899999999999999


Q ss_pred             CCCceEEEEEccCCCCcee
Q 024303          166 YSGRNIAFHVDQGSNPNYL  184 (269)
Q Consensus       166 ~~g~ni~~~v~~Gss~~w~  184 (269)
                      ..+ ++++++.  +|++|-
T Consensus       159 ~~g-~~~~~~~--~n~~~~  174 (180)
T d1wc2a1         159 SEH-NHDHRTP--SNSMYG  174 (180)
T ss_dssp             HHH-HHCTTSC--CHHHHT
T ss_pred             Ccc-ccccccc--CCcchh
Confidence            987 6775544  566663

>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 1 C-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=99.96  E-value=1.8e-29  Score=193.87  Aligned_cols=93  Identities=42%  Similarity=0.948  Sum_probs=87.9

Q ss_pred             eEEEEEccCCCCceeEEEEEEecCCCceeEEEEEcC-CCceEEcccccCceeeeCCCCCCCCCeEEEEEEeeCCeEEEEc
Q 024303          170 NIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEG-SGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVAN  248 (269)
Q Consensus       170 ni~~~v~~Gss~~w~av~v~n~~g~g~I~sVei~~~-~~~W~~m~r~~g~~W~~~~~~~~~gp~~~RiTs~~~G~~v~~~  248 (269)
                      +|.|+|++|||||||+|+|.|+++.++|.+|||++. +++|++|+|+||++|+++++.++.+||+||||+ .+|+++++.
T Consensus         2 ~i~F~v~~gsnp~~lav~v~n~~g~gdI~~vevk~~g~~~W~~m~r~~ga~W~~~~~~~~~gpls~Rvt~-~~G~~~v~~   80 (95)
T d1n10a1           2 KVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTT-EGGTKTEAE   80 (95)
T ss_dssp             CCEEEECTTCBTTEEEEEEECCCCSSCEEEEEEEETTCCCCEECBCCTTTCEEEECSSCCCSCEEEEEEE-SSSCEEEEE
T ss_pred             cEEEEECCCCCcceEEEEEEEcCCCCcEEEEEEEeCCCCcceEEEECCCCeEEECCCCCCCcCEEEEEEE-cCCCEEEEC
Confidence            699999999999999999999999999999999998 578999999999999998765677899999999 999999999


Q ss_pred             ccccCCCCCCcEEec
Q 024303          249 NVIPQGWMPGATYRS  263 (269)
Q Consensus       249 nvip~~~~~G~~y~t  263 (269)
                      ||||++|++|++|++
T Consensus        81 nViP~~W~~G~tY~s   95 (95)
T d1n10a1          81 DVIPEGWKADTSYES   95 (95)
T ss_dssp             EEECSSCCSSEEEEC
T ss_pred             ceECCCCCCCCEEeC
Confidence            999999999999986

>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 2
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=99.94  E-value=4e-27  Score=180.29  Aligned_cols=90  Identities=34%  Similarity=0.677  Sum_probs=84.1

Q ss_pred             eEEEEEccCCCCceeEEEEEEecCCCceeEEEEEcC-CCceEEcccccCceeeeCCCCCCCCCeEEEEEEeeCCeEEEEc
Q 024303          170 NIAFHVDQGSNPNYLAVVVEFEDGDGDLAGVDVKEG-SGEWRAMQQSWGATWKLNAGSELHPPLSLRLTSQYSGQTLVAN  248 (269)
Q Consensus       170 ni~~~v~~Gss~~w~av~v~n~~g~g~I~sVei~~~-~~~W~~m~r~~g~~W~~~~~~~~~gp~~~RiTs~~~G~~v~~~  248 (269)
                      .|.|+|++|||+|||+|+|.|+++  +|..|||+.. +++|++|+|+|||+|+++.+.++.+||+||||+ .+|+++++.
T Consensus         3 ~v~f~v~~GSnp~~lav~v~~~gg--~i~~vev~~~gs~~W~~M~r~wGa~W~~~~~~~~~gplsfRvt~-~~G~~~v~~   79 (94)
T d1whoa_           3 KVTFTVEKGSNEKHLAVLVKYEGD--TMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGPFNFRFLT-EKGMKNVFD   79 (94)
T ss_dssp             SEEEEECTTCBTTEEEEEEEETTC--CEEEEEEECTTCCCCEECEECSTTEEEEECSSCCCSSEEEEEEE-TTSCEEEEE
T ss_pred             cEEEEECCCCCccEEEEEEEEcCC--CEEEEEEEECCCCceeECccCcCccEEECCCCCCCccEEEEEEE-cCCCEEEEc
Confidence            599999999999999999999986  8999999987 568999999999999998765678899999999 999999999


Q ss_pred             ccccCCCCCCcEEe
Q 024303          249 NVIPQGWMPGATYR  262 (269)
Q Consensus       249 nvip~~~~~G~~y~  262 (269)
                      ||||++|++|++|+
T Consensus        80 nViP~~W~~G~ty~   93 (94)
T d1whoa_          80 DVVPEKYTIGATYA   93 (94)
T ss_dssp             EEECSSCCTTCEEC
T ss_pred             ceECCCCCCCCEEC
Confidence            99999999999997

>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Barwin
domain: Barwin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=98.91  E-value=4.1e-10  Score=86.20  Aligned_cols=65  Identities=29%  Similarity=0.573  Sum_probs=55.0

Q ss_pred             CCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcC-hHHHhhcccCCcccccccCceeeeEEEEEecC
Q 024303           87 SGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLS-GTAFGAMAIPGQEEKLRDAGVLEVRYARVACD  165 (269)
Q Consensus        87 ~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs-~~AF~~ia~~~~~~~~~~~G~~~i~wr~V~C~  165 (269)
                      .-..||+|++||.+.    ++.+++++|+|+|..       +.|||. +..|++|-..|+|   ...|.+.|.|++|.|.
T Consensus        59 gq~sCGkclrvTN~a----tga~~~~RiVDqCsn-------gGlDLD~~~vFn~iDtdG~G---~~~Ghl~V~y~fV~C~  124 (125)
T d1bw3a_          59 GQAACGKCLRVTNPA----TGAQITARIVDQCAN-------GGLDLDWDTVFTKIDTNGIG---YQQGHLNVNYQFVDCR  124 (125)
T ss_dssp             SGGGTTCEEEEEETT----TTEEEEEEEEECCSS-------SSCCSCSSSSHHHHCSSCHH---HHHSEEEEEEEEECCC
T ss_pred             CcccccceEEeeecc----cCcEEEEEEeecccC-------CCCccccHhhhheecCCCcc---cccccEEEEEEEecCC
Confidence            346899999999654    478999999999753       679999 6799999876655   7789999999999996

>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase V (Eng V)
species: Humicola insolens [TaxId: 34413]

Probab=93.70  E-value=0.021  Score=47.03  Aligned_cols=54  Identities=28%  Similarity=0.284  Sum_probs=35.7

Q ss_pred             eEEEeCccccCCCCcCCcEEEEEECCCCCCCCCcEEEEEeecCCCCCCCCCCCcEEcCh
Q 024303           76 FVTAIGPSLYKSGKECGACYQVKCTRHPACSGKAVRVVITDFCPGGPCVSESAHFDLSG  134 (269)
Q Consensus        76 ~~aA~s~~~~~~g~~CG~C~~V~c~~~~~C~g~sv~V~V~D~Cp~~~C~~~~~~lDLs~  134 (269)
                      -+||.+-.-...+..|.+|||++=+.. .=.+|+.+|+|++.=.+    -..+||||..
T Consensus        71 GfAA~~~~g~~e~~~Cc~Cy~LtFTs~-~~~GKkMiVQ~tNTGgD----lg~n~FDl~i  124 (210)
T d2enga_          71 GFAATSIAGSNEAGWCCACYELTFTSG-PVAGKKMVVQSTSTGGD----LGSNHFDLNI  124 (210)
T ss_dssp             EEEEEECTTCCHHHHTTCEEEEEECSG-GGTTCEEEEEEEEC---------CCEEEEEC
T ss_pred             eeeeeeecCCCccccccccEEEEeecC-CcCCCEEEEEEeccCCc----cCCCeeeEec
Confidence            356665443344567999999997642 12489999999999654    2378999864