Citrus Sinensis ID: 024306

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT
Secondary Structure (PSIPRED)
ccccccccccEEEEEEccccccHHHHHcHHHHHHHHccEEcEEEccccccHHHHHHHHHHHcccccccEEEEEccccccccHHHHHHccccccccccccccHHHHHHHcccccccccccHHHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHcccEEEEcccccccHHHHHccccEEEEEccccccccccccccccEEEEcccccccccccccccEEEcccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHccEEEEEEEcccccHHHHHHHHHHHHHcccccEEEEcccccccccHHHHHHcccHHHEcccccHHHHHHHHccccccccccHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHcccEEEEEccccccHHHHHccccEEEEcccccccEcHHHcccccEEEEcccEEEEcccccccEEEEccEcHHHHcccccEEcccccccccHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mkksigkvpgLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSnynqdssingilvqlplpqhldegkilDAVSlekdvdgfhplnignlamrgreplfipctpkgCIELLIRSGVEIMGKNAVVIGrsnivglptslllqRHHATVSIVHAltknpeqitSEADIVIAAAGVANLvrgswlkpgavvldvgtcpvddpsceygyrlmgDVCYEEAMRLASvitpvpggvgpMTVAMLLSNTLDSAKRAYGFT
Flexible Loop (DISEMBL)
mkksigkvpglavilvgerrdsqtyvRNKIkaceevgiKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTldsakraygft
Low Complexity Region (SEG)
MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT
Disordered region (IsUnstruct)
*******VPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNT***********
Disordered Region (DISOPRED)
****IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF*
Disordered Region (DISEMBL)
MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT
Disordered Region (DISPRO)
*****GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
Q92BZ4	284	Bifunctional protein FolD	yes	no	0.940	0.890	0.517	1e-73
Q8Y7C5	284	Bifunctional protein FolD	yes	no	0.940	0.890	0.513	2e-73
C1L2R6	284	Bifunctional protein FolD	yes	no	0.940	0.890	0.517	4e-73
B8DFW8	284	Bifunctional protein FolD	yes	no	0.940	0.890	0.513	6e-73
Q71ZW2	284	Bifunctional protein FolD	yes	no	0.940	0.890	0.517	1e-72
P09440	975	C-1-tetrahydrofolate synt	yes	no	0.959	0.264	0.519	9e-71
A0LE04	285	Bifunctional protein FolD	yes	no	0.936	0.884	0.538	1e-70
A1BF67	295	Bifunctional protein FolD	yes	no	0.981	0.894	0.507	1e-69
B4SGR4	295	Bifunctional protein FolD	yes	no	0.962	0.877	0.520	2e-69
B4S820	295	Bifunctional protein FolD	yes	no	0.996	0.908	0.492	2e-69

>sp|Q92BZ4|FOLD_LISIN Bifunctional protein FolD OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=folD PE=3 SV=1

 Score =  276 bits (706), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/261 (51%), Positives = 189/261 (72%), Gaps = 8/261 (3%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           GK PGLAV+LVG+ + S+TYVRNK K  EE G+KS++ E  +  TE+++L  +   N+D+
Sbjct: 29  GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPETVTEEKLLKVVEELNEDN 88

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
           +I+GILVQLPLP+H+ E K++DA+S +KDVDGFHP+N+GNL + G++  F+PCTP G IE
Sbjct: 89  TIHGILVQLPLPKHISEEKVIDAISFDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIE 146

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
           L+  +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ 
Sbjct: 147 LIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVV 206

Query: 186 AAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 245
           A G+A  V+  ++KPGA+V+DVG         +   +L GDV +++    A  ITPVPGG
Sbjct: 207 ATGLAKFVKKEYIKPGAIVIDVGM------DRDENNKLCGDVDFDDVKEQAGFITPVPGG 260

Query: 246 VGPMTVAMLLSNTLDSAKRAY 266
           VGPMT+ MLL+NTL +AKR +
Sbjct: 261 VGPMTITMLLANTLKAAKRIW 281

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.
Listeria innocua serovar 6a (strain CLIP 11262) (taxid: 272626)
EC: 3EC: .EC: 5EC: .EC: 4EC: .EC: 9

>sp|Q8Y7C5|FOLD_LISMO Bifunctional protein FolD OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=folD PE=3 SV=1

 Score =  275 bits (703), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 134/261 (51%), Positives = 190/261 (72%), Gaps = 8/261 (3%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           GK PGLAV+LVG+ + S+TYVRNK K  EE G+KS++ E  +  TE+++L+ +   N+D 
Sbjct: 29  GKQPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDK 88

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
           +I+GILVQLPLP+H+ E K++D +S +KDVDGFHP+N+GNL + G++  F+PCTP G IE
Sbjct: 89  TIHGILVQLPLPEHISEEKVIDTISFDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIE 146

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
           L+  +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ 
Sbjct: 147 LIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVV 206

Query: 186 AAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 245
           A G+A  V+  ++KPGA+V+DVG         +   +L GDV +++ ++ A  ITPVPGG
Sbjct: 207 ATGLAKFVKKDYIKPGAIVIDVGM------DRDENNKLCGDVDFDDVVQEAGFITPVPGG 260

Query: 246 VGPMTVAMLLSNTLDSAKRAY 266
           VGPMT+ MLL+NTL +AKR +
Sbjct: 261 VGPMTITMLLANTLKAAKRIW 281

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|C1L2R6|FOLD_LISMC Bifunctional protein FolD OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=folD PE=3 SV=1

 Score =  274 bits (701), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 135/261 (51%), Positives = 189/261 (72%), Gaps = 8/261 (3%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           GK PGLAV+LVG+ + S+TYVRNK K  EE G+KS++ E  +  TE+++L+ +   N+D 
Sbjct: 29  GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDK 88

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
           +I+GILVQLPLP+H+ E K++D +S +KDVDGFHP+N+GNL + G++  F+PCTP G IE
Sbjct: 89  TIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIE 146

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
           L+  +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ 
Sbjct: 147 LIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVV 206

Query: 186 AAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 245
           A G+A  V+  ++KPGAVV+DVG         +   +L GDV +++ +  A  ITPVPGG
Sbjct: 207 ATGLAKFVKKDYIKPGAVVIDVGM------DRDENNKLCGDVDFDDVVEEAGFITPVPGG 260

Query: 246 VGPMTVAMLLSNTLDSAKRAY 266
           VGPMT+ MLL+NTL +AKR +
Sbjct: 261 VGPMTITMLLANTLKAAKRIW 281

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria monocytogenes serotype 4b (strain Clip81459) (taxid: 568819)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|B8DFW8|FOLD_LISMH Bifunctional protein FolD OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=folD PE=3 SV=1

 Score =  273 bits (699), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 134/261 (51%), Positives = 189/261 (72%), Gaps = 8/261 (3%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           GK PGLAV+LVG+ + S+TYVRNK K  EE G+KS++ E  +  TE+++L+ +   N+D 
Sbjct: 29  GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDK 88

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
           +I+GILVQLPLP+H+ E K++D +S +KDVDGFHP+N+GNL + G++  F+PCTP G IE
Sbjct: 89  TIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIE 146

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
           L+  +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ 
Sbjct: 147 LIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVV 206

Query: 186 AAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 245
           A G+A  V+  ++KPGA+V+DVG         +   +L GDV +++ +  A  ITPVPGG
Sbjct: 207 ATGLAKFVKKDYIKPGAIVIDVGM------DRDENNKLCGDVDFDDVVEEAGFITPVPGG 260

Query: 246 VGPMTVAMLLSNTLDSAKRAY 266
           VGPMT+ MLL+NTL +AKR +
Sbjct: 261 VGPMTITMLLANTLKAAKRIW 281

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria monocytogenes serotype 4a (strain HCC23) (taxid: 552536)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|Q71ZW2|FOLD_LISMF Bifunctional protein FolD OS=Listeria monocytogenes serotype 4b (strain F2365) GN=folD PE=3 SV=1

 Score =  273 bits (698), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 135/261 (51%), Positives = 189/261 (72%), Gaps = 8/261 (3%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           GK PGLAV+LVG+ + S+TYVRNK K  EE G+KS++ E  +  TE+++L+ +   N+D 
Sbjct: 29  GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDK 88

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
           +I+GILVQLPLP+H+ E K++D +S +KDVDGFHP+N+GNL + G++  F+PCTP G IE
Sbjct: 89  TIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGIIE 146

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
           L+  +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++ 
Sbjct: 147 LIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLIENATVTIAHSRTKDLPQVAKEADILVV 206

Query: 186 AAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 245
           A G+A  V+  ++KPGAVV+DVG         +   +L GDV +++ +  A  ITPVPGG
Sbjct: 207 ATGLAKFVKKDYIKPGAVVIDVGM------DRDENNKLCGDVDFDDVVEEAGFITPVPGG 260

Query: 246 VGPMTVAMLLSNTLDSAKRAY 266
           VGPMT+ MLL+NTL +AKR +
Sbjct: 261 VGPMTITMLLANTLKAAKRIW 281

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|P09440|C1TM_YEAST C-1-tetrahydrofolate synthase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MIS1 PE=1 SV=1

 Score =  266 bits (681), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 134/258 (51%), Positives = 181/258 (70%)

Query: 9   PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 68
           P L +I VG R DS TYVR K+KA ++  +  I+ +     TE E+L  +S+ N D SI+
Sbjct: 67  PTLKIIQVGARPDSSTYVRMKLKASKDSNVDCIIEKLPAEITEVELLKKISDINDDDSIH 126

Query: 69  GILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLI 128
           G+L+QLPLP+HLDE  I +AV  +KDVDGFH  N G LA +G +P FIPCTP GC++LL 
Sbjct: 127 GLLIQLPLPRHLDETTITNAVDFKKDVDGFHRYNAGELAKKGGKPYFIPCTPYGCMKLLE 186

Query: 129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAG 188
            + V++ GKNAVV+GRS+IVG P + LL+  +ATV++ H+ T+N  ++ S+ADIVIAA G
Sbjct: 187 EAHVKLDGKNAVVLGRSSIVGNPIASLLKNANATVTVCHSHTRNIAEVVSQADIVIAACG 246

Query: 189 VANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGP 248
           +   V+  W+K GAVV+DVG   V D S + G +L+GDV ++      S ITPVPGGVGP
Sbjct: 247 IPQYVKSDWIKEGAVVIDVGINYVPDISKKSGQKLVGDVDFDSVKEKTSYITPVPGGVGP 306

Query: 249 MTVAMLLSNTLDSAKRAY 266
           MTVAML+SN L +AKR +
Sbjct: 307 MTVAMLVSNVLLAAKRQF 324

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: .

EC: 3

>sp|A0LE04|FOLD_MAGSM Bifunctional protein FolD OS=Magnetococcus sp. (strain MC-1) GN=folD PE=3 SV=1

 Score =  266 bits (679), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 140/260 (53%), Positives = 176/260 (67%), Gaps = 8/260 (3%)

Query: 9   PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 68
           PGLAV+LVG    SQ YVRNK +ACE  GI S   E A   ++ E+L  +   NQD +++
Sbjct: 33  PGLAVVLVGADPASQVYVRNKKRACETAGIASFSHELAATTSQAELLALIEQLNQDDAVH 92

Query: 69  GILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLI 128
           GILVQLPLP+H+DE K+L+A+S  KD DGFHP N+G L     +P F PCTP G +E+L 
Sbjct: 93  GILVQLPLPKHIDEQKVLEAISPSKDADGFHPYNVGRLVT--GDPTFQPCTPWGVMEMLK 150

Query: 129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAG 188
            SGV+  GK+AVVIGRSNIVG P +L+L   HATV+I H+ T +  +    ADIV+AA G
Sbjct: 151 VSGVDPKGKHAVVIGRSNIVGKPVALMLLAAHATVTICHSRTPDLAETVKRADIVVAAVG 210

Query: 189 VANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGP 248
            AN+V GSW+K GAVV+DVG    +D       +L GDV Y      AS ITPVPGGVGP
Sbjct: 211 RANMVPGSWIKKGAVVIDVGINRGED------GKLCGDVDYASCFEHASAITPVPGGVGP 264

Query: 249 MTVAMLLSNTLDSAKRAYGF 268
           MT+AMLL NT++ AKRA+  
Sbjct: 265 MTIAMLLKNTVEGAKRAHNI 284

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Magnetococcus sp. (strain MC-1) (taxid: 156889)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|A1BF67|FOLD_CHLPD Bifunctional protein FolD OS=Chlorobium phaeobacteroides (strain DSM 266) GN=folD PE=3 SV=2

 Score =  263 bits (671), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 136/268 (50%), Positives = 180/268 (67%), Gaps = 4/268 (1%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
            + SIGKVPGL VI+VG    SQ YVRNK K+C E+G+ S V E      ++ +L A+  
Sbjct: 24  FQASIGKVPGLTVIIVGHDPASQVYVRNKAKSCLEIGMHSTVIEMPHDTPQETLLQAIRE 83

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            NQD +++GILVQ PLP+ +DE  +  A+   KDVDGFHP N+G L M   +  F+ CTP
Sbjct: 84  LNQDPAVHGILVQQPLPKQIDEFAVTLAIDPSKDVDGFHPENLGRLVMGHLDKCFVSCTP 143

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRHHA---TVSIVHALTKNPEQI 176
            G +ELL R  +E  GK+ VV+GRSNIVG P  +L++Q+  A   TV++ H+ T++    
Sbjct: 144 YGILELLDRYNIETKGKHCVVVGRSNIVGKPMANLMMQKLDATNCTVTVCHSATRDIPSF 203

Query: 177 TSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLA 236
           T +ADI+IAA G A  +    +KPGAVV+DVG   ++DPS + GYRL+GDV Y+    LA
Sbjct: 204 TKQADILIAALGKARFITADMVKPGAVVIDVGINRIEDPSTKSGYRLVGDVDYDGVAALA 263

Query: 237 SVITPVPGGVGPMTVAMLLSNTLDSAKR 264
           S ITPVPGGVGPMT+AMLL NTL S +R
Sbjct: 264 SAITPVPGGVGPMTIAMLLKNTLQSFRR 291

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Chlorobium phaeobacteroides (strain DSM 266) (taxid: 290317)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|B4SGR4|FOLD_PELPB Bifunctional protein FolD OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=folD PE=3 SV=1

 Score =  262 bits (670), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 137/263 (52%), Positives = 178/263 (67%), Gaps = 4/263 (1%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           GKVPGL VI+VG+   SQ YVRNK K C+E+G+ S V E AD  TE  ++  +   N D 
Sbjct: 29  GKVPGLTVIIVGQDPASQVYVRNKAKTCKEIGMISTVIEMADDTTEKHLIETIHKLNNDP 88

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
           +++GILVQ PLP+ +DE  +  A+   KDVDGFHP N+G L M   +  F+ CTP G +E
Sbjct: 89  TVHGILVQQPLPKQIDEFAVTLAIDPSKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILE 148

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRHHA---TVSIVHALTKNPEQITSEAD 181
           LL R  +E  GK+ VV+GRSNIVG P  +L+LQ+  A   TV+I H+ TKN    T +AD
Sbjct: 149 LLGRYNIETRGKHCVVVGRSNIVGKPMANLMLQKLDATNCTVTICHSATKNIPFYTLQAD 208

Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITP 241
           I+IAA G A  +    +KPGAVV+DVG   ++DPS + GYRL+GDV +E    +AS +TP
Sbjct: 209 ILIAAIGKAGFITADMVKPGAVVIDVGINRIEDPSTKSGYRLVGDVDFEAVSTVASAMTP 268

Query: 242 VPGGVGPMTVAMLLSNTLDSAKR 264
           VPGGVGPMT+AMLL NTL S +R
Sbjct: 269 VPGGVGPMTIAMLLKNTLQSFQR 291

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) (taxid: 324925)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

>sp|B4S820|FOLD_PROA2 Bifunctional protein FolD OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=folD PE=3 SV=1

 Score =  262 bits (669), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 134/272 (49%), Positives = 182/272 (66%), Gaps = 4/272 (1%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K   G VPGL VI+VGE   SQ YVRNK K+C+E G+ S V E     T++E+L  +  
Sbjct: 24  LKAKAGCVPGLTVIIVGEDPASQVYVRNKAKSCKETGMNSTVIELPAETTQEELLGKIEA 83

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            NQD  ++GILVQ PLP H++E  +  A+   KDVDGFHP N+G + +   +  FI CTP
Sbjct: 84  LNQDPDVHGILVQQPLPSHIEEYAVTMAIDPAKDVDGFHPENVGQMVLGNLDKCFISCTP 143

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQR---HHATVSIVHALTKNPEQI 176
            G +ELL R  +E  GK+ VV+GRSNIVG P  +L+LQ+    + TV++ H+ T+N  ++
Sbjct: 144 FGILELLRRYDIETRGKHCVVVGRSNIVGKPMANLMLQKLRETNCTVTVCHSATQNMPEL 203

Query: 177 TSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLA 236
           T +ADI+IAA G AN +    +KPGAVV+DVG   ++DPS + G+RL GDV ++    +A
Sbjct: 204 TRQADILIAAIGRANFITREMVKPGAVVIDVGINRIEDPSRKSGFRLAGDVDFDNVAEMA 263

Query: 237 SVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 268
           S ITPVPGGVGPMT+AMLL NTL S  R++  
Sbjct: 264 SAITPVPGGVGPMTIAMLLKNTLQSFARSHNL 295

Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.

Prosthecochloris aestuarii (strain DSM 271 / SK 413) (taxid: 290512)

EC: 3

EC: .

EC: 5

EC: .

EC: 4

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
224069028	269	predicted protein [Populus trichocarpa]	1.0	1.0	0.814	1e-128
255557907	358	methylenetetrahydrofolate dehydrogenase,	0.996	0.748	0.794	1e-126
449525075	357	PREDICTED: bifunctional protein FolD-lik	1.0	0.753	0.799	1e-125
449459574	357	PREDICTED: bifunctional protein FolD-lik	1.0	0.753	0.795	1e-125
296085803	358	unnamed protein product [Vitis vinifera]	1.0	0.751	0.802	1e-125
225439037	355	PREDICTED: bifunctional protein FolD-lik	1.0	0.757	0.802	1e-125
147770970	362	hypothetical protein VITISV_024214 [Viti	1.0	0.743	0.782	1e-123
356505416	361	PREDICTED: bifunctional protein FolD-lik	1.0	0.745	0.791	1e-123
297823751	350	methylenetetrahydrofolate dehydrogenase	0.988	0.76	0.778	1e-121
357438639	309	Bifunctional protein folD [Medicago trun	1.0	0.870	0.784	1e-121

>gi|224069028|ref|XP_002326257.1| predicted protein [Populus trichocarpa] gi|222833450|gb|EEE71927.1| predicted protein [Populus trichocarpa]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/269 (81%), Positives = 245/269 (91%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MK S+GK+PGLAVILVG+RRDS TYVRNK+KACE+ GIKS+VT+F   C +D+V++ALS 
Sbjct: 1   MKDSVGKIPGLAVILVGDRRDSLTYVRNKVKACEDAGIKSLVTQFPQDCKQDDVIHALSA 60

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N+D SI+GILVQLPLPQHLDEGKIL+ + LEKDVDGFHPLN+GNLAMRGREPLFIPCTP
Sbjct: 61  FNEDPSIHGILVQLPLPQHLDEGKILNVLKLEKDVDGFHPLNMGNLAMRGREPLFIPCTP 120

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGCIELLIRS VEIMGKNAVVIGRSNIVGLP SLLLQRHHATV+IVHA TKNPEQI  EA
Sbjct: 121 KGCIELLIRSSVEIMGKNAVVIGRSNIVGLPISLLLQRHHATVTIVHAFTKNPEQIAREA 180

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DIV+ A GV NLVRG+WLKPGAVV+DVGT PV+DPSCE GYRL+GDVCYEEA ++AS IT
Sbjct: 181 DIVVTATGVPNLVRGNWLKPGAVVIDVGTFPVEDPSCENGYRLIGDVCYEEASKVASAIT 240

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRAYGFT 269
           PVPGGVGPMT+AMLLSNTLDSAKRAY FT
Sbjct: 241 PVPGGVGPMTIAMLLSNTLDSAKRAYDFT 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557907|ref|XP_002519982.1| methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis] gi|223540746|gb|EEF42306.1| methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/268 (79%), Positives = 246/268 (91%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MK+SIGKVPGLAVILVG+RRDSQTYVRNKI AC+E GIKS++TE  + CTED V++A+++
Sbjct: 90  MKESIGKVPGLAVILVGQRRDSQTYVRNKISACDEAGIKSLITELPEDCTEDAVMDAVTS 149

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N+DSSI+G+LVQLPLPQHLDE KIL+ ++LEKDVDGFHPLN+GNLAMRGREPLFIPCTP
Sbjct: 150 FNEDSSIHGVLVQLPLPQHLDENKILNVLNLEKDVDGFHPLNMGNLAMRGREPLFIPCTP 209

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGC+ELLIRS VEI GKNAVVIGRSNIVGLPTSLLLQRHHATV++VHA T +PE+IT +A
Sbjct: 210 KGCVELLIRSDVEIKGKNAVVIGRSNIVGLPTSLLLQRHHATVTVVHAFTNDPEEITRKA 269

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DIV+ AAGV NLVR +WLKPGAVV+DVGTCPV+DPS E GYRL GDVCYEEA+++AS IT
Sbjct: 270 DIVVTAAGVPNLVRNNWLKPGAVVIDVGTCPVEDPSSECGYRLTGDVCYEEAVKVASAIT 329

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRAYGF 268
           PVPGGVGPMT+AMLLSNTLDSAKR Y F
Sbjct: 330 PVPGGVGPMTIAMLLSNTLDSAKRTYNF 357

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525075|ref|XP_004169545.1| PREDICTED: bifunctional protein FolD-like [Cucumis sativus]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 215/269 (79%), Positives = 241/269 (89%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MK + G VPGLAVI+VG+RRDSQ YVRNKI ACEE GI S ++   + CTED+VLNALS 
Sbjct: 89  MKNATGNVPGLAVIMVGQRRDSQIYVRNKIAACEEAGIMSEISNLPEDCTEDQVLNALSR 148

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +++D SI+GILVQLPLPQHLDE KIL++V LEKDVDGFHPLN+GNLAMRGREPLF+PCTP
Sbjct: 149 FHEDPSIHGILVQLPLPQHLDESKILNSVHLEKDVDGFHPLNMGNLAMRGREPLFLPCTP 208

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGCIELLIRSGVEI GK AVVIGRSNIVGLPTSLLLQRHHATVSIVHA T+NPEQI  EA
Sbjct: 209 KGCIELLIRSGVEITGKRAVVIGRSNIVGLPTSLLLQRHHATVSIVHAFTRNPEQIAREA 268

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DIV+AAAGV NLVRGSWLKPGA+V+DVG  PV+DPSCE+GYRL+GDVCYEEA R+AS IT
Sbjct: 269 DIVVAAAGVPNLVRGSWLKPGAIVIDVGINPVEDPSCEFGYRLIGDVCYEEASRVASAIT 328

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRAYGFT 269
           PVPGGVGP+TVAMLL NTL+SAKRA+ FT
Sbjct: 329 PVPGGVGPVTVAMLLLNTLESAKRAHNFT 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459574|ref|XP_004147521.1| PREDICTED: bifunctional protein FolD-like [Cucumis sativus]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/269 (79%), Positives = 241/269 (89%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MK + G VPGLAVI+VG+RRDSQ YVRNKI ACEE GI S ++   + CTED+VLNALS 
Sbjct: 89  MKNATGNVPGLAVIMVGQRRDSQIYVRNKIAACEEAGIMSEISNLPEDCTEDQVLNALSR 148

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +++D SI+GILVQLPLPQHLDE KIL++V LEKDVDGFHPLN+GNLAMRGREPLF+PCTP
Sbjct: 149 FHEDPSIHGILVQLPLPQHLDESKILNSVHLEKDVDGFHPLNMGNLAMRGREPLFLPCTP 208

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGC+ELLIRSGVEI GK AVVIGRSNIVGLPTSLLLQRHHATVSIVHA T+NPEQI  EA
Sbjct: 209 KGCVELLIRSGVEITGKRAVVIGRSNIVGLPTSLLLQRHHATVSIVHAFTRNPEQIAREA 268

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DIV+AAAGV NLVRGSWLKPGA+V+DVG  PV+DPSCE+GYRL+GDVCYEEA R+AS IT
Sbjct: 269 DIVVAAAGVPNLVRGSWLKPGAIVIDVGINPVEDPSCEFGYRLIGDVCYEEASRVASAIT 328

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRAYGFT 269
           PVPGGVGP+TVAMLL NTL+SAKRA+ FT
Sbjct: 329 PVPGGVGPVTVAMLLLNTLESAKRAHNFT 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085803|emb|CBI31127.3| unnamed protein product [Vitis vinifera]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/269 (80%), Positives = 246/269 (91%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MK+SIGKVPGLAVILVG+RRDSQTYVRNKIKACEE GIKS++ E  + CTEDE+L+ALS+
Sbjct: 90  MKESIGKVPGLAVILVGQRRDSQTYVRNKIKACEEAGIKSLMAELPEDCTEDEILSALSS 149

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N++ SI+GILVQLPLP+HLDE KIL+ VSLEKDVDGF+PLN+GNLAMRGREPLFIPCT 
Sbjct: 150 FNENPSIHGILVQLPLPKHLDEEKILNMVSLEKDVDGFNPLNMGNLAMRGREPLFIPCTA 209

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGCIELL+RSGVEIMGK AVVIGRSNI GLPTSLLLQRHHATVSI+HAL+KNP+QIT +A
Sbjct: 210 KGCIELLLRSGVEIMGKKAVVIGRSNIAGLPTSLLLQRHHATVSILHALSKNPDQITRQA 269

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DIV+ A GV NLVRG WLKPGAVV+DVGT PV+DPS E+GY L+GDVCYEEA+ +AS +T
Sbjct: 270 DIVVTAVGVPNLVRGHWLKPGAVVIDVGTYPVEDPSSEFGYHLVGDVCYEEALGVASAVT 329

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRAYGFT 269
           PVPGGVGPMT+AMLLSNTLDSAKRAY  T
Sbjct: 330 PVPGGVGPMTIAMLLSNTLDSAKRAYDIT 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439037|ref|XP_002264477.1| PREDICTED: bifunctional protein FolD-like [Vitis vinifera]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/269 (80%), Positives = 246/269 (91%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MK+SIGKVPGLAVILVG+RRDSQTYVRNKIKACEE GIKS++ E  + CTEDE+L+ALS+
Sbjct: 87  MKESIGKVPGLAVILVGQRRDSQTYVRNKIKACEEAGIKSLMAELPEDCTEDEILSALSS 146

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N++ SI+GILVQLPLP+HLDE KIL+ VSLEKDVDGF+PLN+GNLAMRGREPLFIPCT 
Sbjct: 147 FNENPSIHGILVQLPLPKHLDEEKILNMVSLEKDVDGFNPLNMGNLAMRGREPLFIPCTA 206

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGCIELL+RSGVEIMGK AVVIGRSNI GLPTSLLLQRHHATVSI+HAL+KNP+QIT +A
Sbjct: 207 KGCIELLLRSGVEIMGKKAVVIGRSNIAGLPTSLLLQRHHATVSILHALSKNPDQITRQA 266

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DIV+ A GV NLVRG WLKPGAVV+DVGT PV+DPS E+GY L+GDVCYEEA+ +AS +T
Sbjct: 267 DIVVTAVGVPNLVRGHWLKPGAVVIDVGTYPVEDPSSEFGYHLVGDVCYEEALGVASAVT 326

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRAYGFT 269
           PVPGGVGPMT+AMLLSNTLDSAKRAY  T
Sbjct: 327 PVPGGVGPMTIAMLLSNTLDSAKRAYDIT 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770970|emb|CAN65246.1| hypothetical protein VITISV_024214 [Vitis vinifera]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 216/276 (78%), Positives = 246/276 (89%), Gaps = 7/276 (2%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MK+SIGKVPGLAVILVG+RRDSQTYVRNKIKACEE GIKS++ E  + CTEDE+L+ALS+
Sbjct: 87  MKESIGKVPGLAVILVGQRRDSQTYVRNKIKACEEAGIKSLMAELPEDCTEDEILSALSS 146

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N++ SI+GILVQLPLP+HLDE KIL+ VSLEKDVDGF+PLN+GNLAMRGREPLFIPCT 
Sbjct: 147 FNENPSIHGILVQLPLPKHLDEEKILNMVSLEKDVDGFNPLNMGNLAMRGREPLFIPCTA 206

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGCIELL+RSGVEIMGK AVVIGRSNI GLPTSLLLQRHHATVSI+HAL+KNP+QIT +A
Sbjct: 207 KGCIELLLRSGVEIMGKKAVVIGRSNIAGLPTSLLLQRHHATVSILHALSKNPDQITRQA 266

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVD-------DPSCEYGYRLMGDVCYEEAM 233
           DIV+ A GV NLVRG WLKPGAVV+DVGT PV+       DPS E+GY L+GDVCYEEA+
Sbjct: 267 DIVVTAVGVPNLVRGHWLKPGAVVIDVGTYPVEIKLMDQQDPSSEFGYHLVGDVCYEEAL 326

Query: 234 RLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT 269
            +AS +TPVPGGVGPMT+AMLLSNTLDSAKRAY  T
Sbjct: 327 GVASAVTPVPGGVGPMTIAMLLSNTLDSAKRAYDIT 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505416|ref|XP_003521487.1| PREDICTED: bifunctional protein FolD-like [Glycine max]

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 213/269 (79%), Positives = 239/269 (88%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MKK +GKVPGLAVILVG+RRDSQTYVRNKI ACEEVGIKS+VTE    C   +V NA+  
Sbjct: 93  MKKGLGKVPGLAVILVGQRRDSQTYVRNKIMACEEVGIKSLVTELPTDCAVTDVQNAIMR 152

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N+D SI+GILVQLPLPQHLDE K+LDAV LEKDVDGFHPLN+GNLA+RGREPLF PCTP
Sbjct: 153 FNKDPSIHGILVQLPLPQHLDEEKVLDAVCLEKDVDGFHPLNMGNLAIRGREPLFTPCTP 212

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGCIELLIRSGVEIMGK AVVIG SNIVGLP SLLLQRHHATV+++HA T+NPEQITSEA
Sbjct: 213 KGCIELLIRSGVEIMGKKAVVIGTSNIVGLPASLLLQRHHATVTVIHAFTQNPEQITSEA 272

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DIV++AAGV NLVRG+W+KPGA V+DVGT PV+DP CE GYRL GDVCYEEA+++AS+IT
Sbjct: 273 DIVVSAAGVPNLVRGNWIKPGAAVIDVGTTPVEDPGCEDGYRLAGDVCYEEAVKVASIIT 332

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRAYGFT 269
           PVPGGVGPMTVAMLL NTLDSAKR   F+
Sbjct: 333 PVPGGVGPMTVAMLLCNTLDSAKRMLNFS 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823751|ref|XP_002879758.1| methylenetetrahydrofolate dehydrogenase [Arabidopsis lyrata subsp. lyrata] gi|297325597|gb|EFH56017.1| methylenetetrahydrofolate dehydrogenase [Arabidopsis lyrata subsp. lyrata]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 207/266 (77%), Positives = 239/266 (89%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MKK++GKVPGLAV+LVG++RDSQTYVRNKIKACEE GIKSI+ E  + CTE ++L+ L  
Sbjct: 84  MKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSILAELPEDCTEGQILSILKK 143

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N+D+SI+GILVQLPLPQHLDE KIL+ V LEKDVDGFHPLN+GNLAMRGREPLF+ CTP
Sbjct: 144 FNEDTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTP 203

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGC+ELLIR+GVEI GKNAVVIGRSNIVGLP SLLLQRH ATVS VHA TK+PEQIT +A
Sbjct: 204 KGCVELLIRAGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKA 263

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DIVIAAAG+ +LVRGSWLKPGAVV+DVGT PV+D SCE+GYRL+GDVCYEEA+ +AS IT
Sbjct: 264 DIVIAAAGIPSLVRGSWLKPGAVVIDVGTSPVEDSSCEFGYRLVGDVCYEEALGVASAIT 323

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRAY 266
           PVPGGVGPMT+ MLL NTLD+AKR +
Sbjct: 324 PVPGGVGPMTITMLLCNTLDAAKRIF 349

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438639|ref|XP_003589595.1| Bifunctional protein folD [Medicago truncatula] gi|355478643|gb|AES59846.1| Bifunctional protein folD [Medicago truncatula]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/269 (78%), Positives = 239/269 (88%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MKK +GKVPGLAVILVG+RRDS TYVRNKI ACEEVG+KS+VTE    C + +V NA+  
Sbjct: 41  MKKGLGKVPGLAVILVGQRRDSLTYVRNKIIACEEVGMKSVVTELPTDCADADVQNAIMR 100

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N+D SI+GILVQLPLPQHLDE KILDAV LEKDVDGFHP+N+GNLA+RGREPLFIPCT 
Sbjct: 101 FNKDPSIHGILVQLPLPQHLDEEKILDAVCLEKDVDGFHPVNMGNLALRGREPLFIPCTT 160

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           K CIELLIRSGVEIMGK AVVIGRSNIVGLPTSLLLQRHHATV++VHA T+NPEQITSEA
Sbjct: 161 KACIELLIRSGVEIMGKKAVVIGRSNIVGLPTSLLLQRHHATVTVVHAFTENPEQITSEA 220

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DIV++AAGV NLV G+W+K GA V+DVGT PV+DPSCE GYRL+GDVC+EE +++ASVIT
Sbjct: 221 DIVVSAAGVPNLVCGNWIKSGATVIDVGTIPVEDPSCEDGYRLVGDVCFEEVIKVASVIT 280

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRAYGFT 269
           PVPGGVGPMTV MLL NTLDSAKR + FT
Sbjct: 281 PVPGGVGPMTVTMLLVNTLDSAKRLFNFT 309

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
TAIR|locus:2064143	352	AT2G38660 [Arabidopsis thalian	0.988	0.755	0.766	2.6e-111
TAIR|locus:2127113	360	EMB3127 "EMBRYO DEFECTIVE 3127	0.996	0.744	0.708	5.4e-102
TAIR|locus:2082254	299	AT3G12290 [Arabidopsis thalian	0.973	0.876	0.633	1.4e-87
TAIR|locus:2127083	310	AT4G00600 [Arabidopsis thalian	0.944	0.819	0.616	6.6e-81
DICTYBASE|DDB_G0283121	292	DDB_G0283121 "methenyl tetrahy	0.959	0.883	0.553	9.9e-71
ASPGD|ASPL0000036964	1031	AN2998 [Emericella nidulans (t	0.955	0.249	0.546	7.5e-67
SGD|S000000288	975	MIS1 "Mitochondrial C1-tetrahy	0.959	0.264	0.519	1.5e-65
FB|FBgn0020385	968	pug "pugilist" [Drosophila mel	0.977	0.271	0.509	1.7e-65
CGD|CAL0000024	1025	MIS12 [Candida albicans (taxid	0.944	0.247	0.484	1.5e-63
UNIPROTKB|Q5AAF6	1025	MIS1 "Putative uncharacterized	0.944	0.247	0.484	1.5e-63

TAIR|locus:2064143 AT2G38660 [Arabidopsis thaliana (taxid:3702)]

 Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
 Identities = 204/266 (76%), Positives = 238/266 (89%)

Query:     1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
             MKK++GKVPGLAV+LVGE+RDSQTYVRNKIKACEE GIKS++ E  + CTE ++++ L  
Sbjct:    86 MKKAVGKVPGLAVVLVGEQRDSQTYVRNKIKACEETGIKSVLAELPEDCTEGQIISVLRK 145

Query:    61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
             +N+D+SI+GILVQLPLPQHL+E KIL+ V LEKDVDGFHPLN+GNLAMRGREPLF+ CTP
Sbjct:   146 FNEDTSIHGILVQLPLPQHLNESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTP 205

Query:   121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
             KGC+ELLIR+GVEI GKNAVVIGRSNIVGLP SLLLQRH ATVS VHA TK+PE IT +A
Sbjct:   206 KGCVELLIRTGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEHITRKA 265

Query:   181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
             DIVIAAAG+ NLVRGSWLKPGAVV+DVGT PV+D SCE+GYRL+GDVCYEEA+ +AS IT
Sbjct:   266 DIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVEDSSCEFGYRLVGDVCYEEALGVASAIT 325

Query:   241 PVPGGVGPMTVAMLLSNTLDSAKRAY 266
             PVPGGVGPMT+ MLL NTL++AKR +
Sbjct:   326 PVPGGVGPMTITMLLCNTLEAAKRIF 351

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2127113 EMB3127 "EMBRYO DEFECTIVE 3127" [Arabidopsis thaliana (taxid:3702)]

 Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
 Identities = 190/268 (70%), Positives = 226/268 (84%)

Query:     1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
             MK+SIG +PGLAVILVG+R+DS TYVRNK KAC+ VGIKS     A+  +E+EVL ++S 
Sbjct:    92 MKESIGVIPGLAVILVGDRKDSATYVRNKKKACDSVGIKSFEVRLAEDSSEEEVLKSVSG 151

Query:    61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
             +N D S++GILVQLPLP H+DE  IL+AVS+EKDVDGFHPLNIG LAMRGREPLF+PCTP
Sbjct:   152 FNDDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTP 211

Query:   121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
             KGCIELL R  +EI GK AVVIGRSNIVG+P +LLLQR  ATVSI+H+ TKNPE+IT EA
Sbjct:   212 KGCIELLHRYNIEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIIHSRTKNPEEITREA 271

Query:   181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
             DI+I+A G  N+VRGSW+KPGAV++DVG  PV+DPS   GYRL+GD+CYEEA ++AS IT
Sbjct:   272 DIIISAVGQPNMVRGSWIKPGAVLIDVGINPVEDPSAARGYRLVGDICYEEASKVASAIT 331

Query:   241 PVPGGVGPMTVAMLLSNTLDSAKRAYGF 268
             PVPGGVGPMT+AMLLSNTL SAKR + F
Sbjct:   332 PVPGGVGPMTIAMLLSNTLTSAKRIHNF 359

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2082254 AT3G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
 Identities = 166/262 (63%), Positives = 209/262 (79%)

Query:     6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
             GKVPGLAV++VG R+DSQTYV  K KAC EVGIKS      +  +E ++++ +   N + 
Sbjct:    37 GKVPGLAVVIVGSRKDSQTYVNTKRKACAEVGIKSFDVGLPEEVSEADLISKVHELNSNP 96

Query:    66 SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
              ++GILVQLPLP+H++E  IL A+S++KDVDGFHPLNIG LAM+GREPLF+PCTPKGC+E
Sbjct:    97 DVHGILVQLPLPKHINEEHILGAISIDKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLE 156

Query:   126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
             LL RSGV+I G+ AVV+GRSNIVGLP SLLL +  ATV+ VH+ TK+PE I  EADIVIA
Sbjct:   157 LLARSGVKIKGQRAVVVGRSNIVGLPVSLLLLKADATVTTVHSHTKDPEAIIREADIVIA 216

Query:   186 AAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 245
             A G A++++G+W+KPGA V+DVGT  V DPS + GYRL+GDV + EA ++A  ITPVPGG
Sbjct:   217 ACGQAHMIKGNWIKPGAAVIDVGTNAVSDPSKKSGYRLVGDVDFAEASKVAGFITPVPGG 276

Query:   246 VGPMTVAMLLSNTLDSAKRAYG 267
             VGPMTVAMLL NT+D AKR +G
Sbjct:   277 VGPMTVAMLLRNTVDGAKRVFG 298

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2127083 AT4G00600 [Arabidopsis thaliana (taxid:3702)]

 Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
 Identities = 159/258 (61%), Positives = 201/258 (77%)

Query:    12 AVILVGERRDSQTYVRNKIKACEEVGIK-SIVTEFADGCTEDEVLNALSNYNQDSSINGI 70
             A+++ G+    +  +R+ IK  E   +K SI    A+  +E+EVL  +S +N D S++G+
Sbjct:    55 AIVIDGKAEAKK--IRDDIKI-EVSRMKESIGVVPAEDSSEEEVLKYVSGFNDDPSVHGV 111

Query:    71 LVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRS 130
             LVQLPLP H+DE  IL+AVS+EKDVDGFHPLNIG LAMRGREPLF+PCTPKGCIELL R 
Sbjct:   112 LVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRY 171

Query:   131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVA 190
              +E  GK AVVIGRSNIVG+P +LLLQ+  ATVSI+H+ T NPE++T +ADI+I+A G  
Sbjct:   172 NIEFKGKRAVVIGRSNIVGMPAALLLQKEDATVSIIHSRTMNPEELTRQADILISAVGKP 231

Query:   191 NLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMT 250
             N+VRGSW+KPGAV++DVG  PV+DPS   G RL+GD+CY EA ++AS ITPVPG VGPMT
Sbjct:   232 NMVRGSWIKPGAVLIDVGIKPVEDPSAAGGERLVGDICYVEASKIASAITPVPGDVGPMT 291

Query:   251 VAMLLSNTLDSAKRAYGF 268
             +AMLLSNTL SAKR + F
Sbjct:   292 IAMLLSNTLTSAKRIHNF 309

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0055114 "oxidation-reduction process" evidence=IEA

DICTYBASE|DDB_G0283121 DDB_G0283121 "methenyl tetrahydrofolate cyclohydrolase / NADP-dependent methylene H4F dehydrogenase" [Dictyostelium discoideum (taxid:44689)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 146/264 (55%), Positives = 189/264 (71%)

Query:     1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
             MK+   + P L VILVG+R+DSQTYVRNK K   ++GI SI     +  T+ E+++ + +
Sbjct:    31 MKEKGLRAPCLVVILVGDRKDSQTYVRNKKKTASDLGINSIDILLPEQTTQQELIDLVQS 90

Query:    61 YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
             Y++   ++GILVQLPLP H++E  IL  +   KDVDGFHP+NIG LAMRGR+  F PCTP
Sbjct:    91 YSKKDDVDGILVQLPLPSHINEEIILTQIDESKDVDGFHPVNIGKLAMRGRKADFEPCTP 150

Query:   121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
             KGCIE+L RSG+EI GKNAVV+GRSNIVGLP S+LL    ATV+I H+ T N ++   EA
Sbjct:   151 KGCIEMLDRSGIEIAGKNAVVLGRSNIVGLPVSMLLLSRDATVTICHSKTPNLKEKCREA 210

Query:   181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
             DI++ A G A LV+  W+K GAVV+DVG    D+ +     +L GDV Y E   +AS IT
Sbjct:   211 DILVVAIGKAKLVKKDWVKTGAVVIDVGM-NTDENN-----KLCGDVDYNEVKEVASYIT 264

Query:   241 PVPGGVGPMTVAMLLSNTLDSAKR 264
             PVPGGVGPMT+AML+ NTL+SAK+
Sbjct:   265 PVPGGVGPMTIAMLMKNTLESAKK 288

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;ISS

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA;IBA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=IBA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000036964 AN2998 [Emericella nidulans (taxid:162425)]

 Score = 684 (245.8 bits), Expect = 7.5e-67, P = 7.5e-67
 Identities = 141/258 (54%), Positives = 175/258 (67%)

Query:     9 PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 68
             P L +  VG+R DS TYVR K+KA EE  I   +  F +  T+ E+L  +S  N D S++
Sbjct:   127 PSLVIFQVGDRSDSSTYVRMKLKAAEEANILCKIVNFPESITQPEILQEISQANNDPSVH 186

Query:    69 GILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLI 128
             GILVQLPLPQHL E  +  AV+ EKDVDGF  +NIG LA RG  PLF+PCTPK  + LL 
Sbjct:   187 GILVQLPLPQHLSEHAVTSAVADEKDVDGFGAINIGELAKRGGRPLFVPCTPKAVMVLLK 246

Query:   129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAG 188
              SGV+  GK AVV+GRS+IVG P S LL+   ATV++ H+ T +      +ADIV+AA G
Sbjct:   247 ASGVDPAGKEAVVLGRSDIVGSPVSYLLKNADATVTVCHSKTPDIASAVKKADIVVAAIG 306

Query:   189 VANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGP 248
                 V+G W+KPGAVV+DVG     D + + G RL+GDV YE A ++AS ITPVPGGVGP
Sbjct:   307 KTEFVKGDWIKPGAVVIDVGINYKPDSTKKSGQRLVGDVEYESASQVASKITPVPGGVGP 366

Query:   249 MTVAMLLSNTLDSAKRAY 266
             MTVAMLL N + SAK AY
Sbjct:   367 MTVAMLLENVVASAK-AY 383

GO:0006730 "one-carbon metabolic process" evidence=IEA;RCA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA;RCA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=IEA;RCA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA;RCA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA

GO:0046656 "folic acid biosynthetic process" evidence=IEA

GO:0009257 "10-formyltetrahydrofolate biosynthetic process" evidence=IEA

SGD|S000000288 MIS1 "Mitochondrial C1-tetrahydrofolate synthase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 670 (240.9 bits), Expect = 1.5e-65, P = 1.5e-65
 Identities = 134/258 (51%), Positives = 181/258 (70%)

Query:     9 PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 68
             P L +I VG R DS TYVR K+KA ++  +  I+ +     TE E+L  +S+ N D SI+
Sbjct:    67 PTLKIIQVGARPDSSTYVRMKLKASKDSNVDCIIEKLPAEITEVELLKKISDINDDDSIH 126

Query:    69 GILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLI 128
             G+L+QLPLP+HLDE  I +AV  +KDVDGFH  N G LA +G +P FIPCTP GC++LL 
Sbjct:   127 GLLIQLPLPRHLDETTITNAVDFKKDVDGFHRYNAGELAKKGGKPYFIPCTPYGCMKLLE 186

Query:   129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAG 188
              + V++ GKNAVV+GRS+IVG P + LL+  +ATV++ H+ T+N  ++ S+ADIVIAA G
Sbjct:   187 EAHVKLDGKNAVVLGRSSIVGNPIASLLKNANATVTVCHSHTRNIAEVVSQADIVIAACG 246

Query:   189 VANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGP 248
             +   V+  W+K GAVV+DVG   V D S + G +L+GDV ++      S ITPVPGGVGP
Sbjct:   247 IPQYVKSDWIKEGAVVIDVGINYVPDISKKSGQKLVGDVDFDSVKEKTSYITPVPGGVGP 306

Query:   249 MTVAMLLSNTLDSAKRAY 266
             MTVAML+SN L +AKR +
Sbjct:   307 MTVAMLVSNVLLAAKRQF 324

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0035999 "tetrahydrofolate interconversion" evidence=IEA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=IEA;IDA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=IEA;IDA

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=IEA;IDA

GO:0000105 "histidine biosynthetic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006164 "purine nucleotide biosynthetic process" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0046656 "folic acid biosynthetic process" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009086 "methionine biosynthetic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IMP

FB|FBgn0020385 pug "pugilist" [Drosophila melanogaster (taxid:7227)]

 Score = 654 (235.3 bits), Expect = 1.7e-65, Sum P(2) = 1.7e-65
 Identities = 136/267 (50%), Positives = 183/267 (68%)

Query:     1 MKKSIGK-VPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALS 59
             M K +   VPGL ++ VG R DS  Y+R KIKA  E+GI +   +     TE E+L+ ++
Sbjct:    61 MSKQLADFVPGLRIVQVGGREDSNVYIRMKIKAATEIGIDAAHVQLPRSITEVELLDKIN 120

Query:    60 NYNQDSSINGILVQLPLP--QHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIP 117
             + N+D  ++GI+VQ+PL     +D  +I DAVS EKDVDG H +N G LA+ G    F+P
Sbjct:   121 DLNEDPRVHGIIVQMPLDCDTPIDSHRITDAVSPEKDVDGLHTVNEGRLAI-GDLGGFLP 179

Query:   118 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQIT 177
             CTP GC+EL+ RSGVEI G  AVV+GRS IVG P + LL+  +ATV++ H+ T+N E+IT
Sbjct:   180 CTPWGCLELIRRSGVEIAGARAVVLGRSKIVGTPAAELLKWANATVTVCHSKTRNLEEIT 239

Query:   178 SEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLAS 237
               ADI++   GVA +V+GSW+KPGAVV+D G     D S   G +L+GDV Y EA+++A 
Sbjct:   240 RSADILVVGIGVAEMVKGSWIKPGAVVIDCGINVKPDASKASGSKLVGDVDYAEALQVAG 299

Query:   238 VITPVPGGVGPMTVAMLLSNTLDSAKR 264
              +TPVPGGVGPMTVAML+ NT+ SA R
Sbjct:   300 HLTPVPGGVGPMTVAMLMKNTVRSAAR 326

GO:0004488 "methylenetetrahydrofolate dehydrogenase (NADP+) activity" evidence=ISS;IBA

GO:0004477 "methenyltetrahydrofolate cyclohydrolase activity" evidence=ISS;IBA

GO:0004329 "formate-tetrahydrofolate ligase activity" evidence=ISS;IBA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0006730 "one-carbon metabolic process" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

CGD|CAL0000024 MIS12 [Candida albicans (taxid:5476)]

 Score = 654 (235.3 bits), Expect = 1.5e-63, P = 1.5e-63
 Identities = 123/254 (48%), Positives = 174/254 (68%)

Query:     9 PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 68
             P L ++ VG R DS  YV++K+KA     IKS + +  +  ++++++  +   N+D  ++
Sbjct:   110 PSLTILQVGSRPDSSAYVKSKLKAAASSNIKSKLIKLDESISQEDLVEVIERLNKDPKVH 169

Query:    69 GILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLI 128
             GILVQLPLP+H+DE  I ++V+ +KDVDGF   N+G L+ RG  P F PCTP G +EL+ 
Sbjct:   170 GILVQLPLPKHIDESVITNSVATDKDVDGFDHYNVGQLSKRGGTPYFKPCTPNGIMELIK 229

Query:   129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAG 188
              +G+ + GK AVVIGRS+IVG P + +L+    TV++ H  T+N  +I  +ADIV+AA G
Sbjct:   230 TTGIPLRGKTAVVIGRSDIVGTPVATMLRNEDCTVTVCHRYTQNLPEIVRQADIVVAAVG 289

Query:   189 VANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGP 248
             +A  V+  W+K GA+V+DVG    DDP+ + G RL+GDV YEE  + AS ITPVPGGVGP
Sbjct:   290 IAEYVKADWVKDGAIVIDVGINYKDDPTAKRGRRLVGDVDYEEVAKKASFITPVPGGVGP 349

Query:   249 MTVAMLLSNTLDSA 262
             MTVAML SN  D+A
Sbjct:   350 MTVAMLCSNVYDAA 363

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5AAF6 MIS1 "Putative uncharacterized protein MIS1" [Candida albicans SC5314 (taxid:237561)]

 Score = 654 (235.3 bits), Expect = 1.5e-63, P = 1.5e-63
 Identities = 123/254 (48%), Positives = 174/254 (68%)

Query:     9 PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 68
             P L ++ VG R DS  YV++K+KA     IKS + +  +  ++++++  +   N+D  ++
Sbjct:   110 PSLTILQVGSRPDSSAYVKSKLKAAASSNIKSKLIKLDESISQEDLVEVIERLNKDPKVH 169

Query:    69 GILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLI 128
             GILVQLPLP+H+DE  I ++V+ +KDVDGF   N+G L+ RG  P F PCTP G +EL+ 
Sbjct:   170 GILVQLPLPKHIDESVITNSVATDKDVDGFDHYNVGQLSKRGGTPYFKPCTPNGIMELIK 229

Query:   129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAG 188
              +G+ + GK AVVIGRS+IVG P + +L+    TV++ H  T+N  +I  +ADIV+AA G
Sbjct:   230 TTGIPLRGKTAVVIGRSDIVGTPVATMLRNEDCTVTVCHRYTQNLPEIVRQADIVVAAVG 289

Query:   189 VANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGP 248
             +A  V+  W+K GA+V+DVG    DDP+ + G RL+GDV YEE  + AS ITPVPGGVGP
Sbjct:   290 IAEYVKADWVKDGAIVIDVGINYKDDPTAKRGRRLVGDVDYEEVAKKASFITPVPGGVGP 349

Query:   249 MTVAMLLSNTLDSA 262
             MTVAML SN  D+A
Sbjct:   350 MTVAMLCSNVYDAA 363

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B3ECA6	FOLD_CHLL2	3, ., 5, ., 4, ., 9	0.5111	0.9814	0.8918	yes	no
Q71ZW2	FOLD_LISMF	3, ., 5, ., 4, ., 9	0.5172	0.9405	0.8908	yes	no
C3LJV5	FOLD_BACAC	3, ., 5, ., 4, ., 9	0.5019	0.9479	0.8916	yes	no
B2A532	FOLD_NATTJ	3, ., 5, ., 4, ., 9	0.5190	0.9405	0.8908	yes	no
A5VV73	FOLD_BRUO2	3, ., 5, ., 4, ., 9	0.4756	0.9851	0.8862	yes	no
B8DFW8	FOLD_LISMH	3, ., 5, ., 4, ., 9	0.5134	0.9405	0.8908	yes	no
Q8YCL8	FOLD_BRUME	3, ., 5, ., 4, ., 9	0.4756	0.9851	0.8862	yes	no
Q8FVP6	FOLD_BRUSU	3, ., 5, ., 4, ., 9	0.4756	0.9851	0.8862	yes	no
B4S820	FOLD_PROA2	3, ., 5, ., 4, ., 9	0.4926	0.9962	0.9084	yes	no
A9MC67	FOLD_BRUC2	3, ., 5, ., 4, ., 9	0.4756	0.9851	0.8862	yes	no
C1L2R6	FOLD_LISMC	3, ., 5, ., 4, ., 9	0.5172	0.9405	0.8908	yes	no
Q8Y7C5	FOLD_LISMO	3, ., 5, ., 4, ., 9	0.5134	0.9405	0.8908	yes	no
Q92BZ4	FOLD_LISIN	3, ., 5, ., 4, ., 9	0.5172	0.9405	0.8908	yes	no
C0ZC05	FOLD_BREBN	3, ., 5, ., 4, ., 9	0.5076	0.9442	0.8943	yes	no
B9M769	FOLD_GEOSF	3, ., 5, ., 4, ., 9	0.4980	0.9330	0.8964	yes	no
A8ZTQ4	FOLD_DESOH	3, ., 5, ., 4, ., 9	0.4837	0.9962	0.8844	yes	no
A3DEE6	FOLD_CLOTH	3, ., 5, ., 4, ., 9	0.4901	0.9182	0.8666	yes	no
A0AIG1	FOLD_LISW6	3, ., 5, ., 4, ., 9	0.5057	0.9479	0.8978	yes	no
A6GZM5	FOLD_FLAPJ	3, ., 5, ., 4, ., 9	0.4942	0.9553	0.8741	yes	no
A4SER8	FOLD_PROVI	3, ., 5, ., 4, ., 9	0.4907	0.9925	0.9050	yes	no
Q39WH4	FOLD2_GEOMG	3, ., 5, ., 4, ., 9	0.4961	0.9442	0.8912	yes	no
Q11UD1	FOLD_CYTH3	3, ., 5, ., 4, ., 9	0.4750	0.9479	0.8793	yes	no
Q3B4E2	FOLD_PELLD	3, ., 5, ., 4, ., 9	0.4943	0.9776	0.8915	yes	no
B2SAP4	FOLD_BRUA1	3, ., 5, ., 4, ., 9	0.4756	0.9851	0.8862	yes	no
C0RLT3	FOLD_BRUMB	3, ., 5, ., 4, ., 9	0.4756	0.9851	0.8862	yes	no
A7GSJ9	FOLD_BACCN	3, ., 5, ., 4, ., 9	0.5037	0.9553	0.8986	yes	no
A5FNE3	FOLD_FLAJ1	3, ., 5, ., 4, ., 9	0.4866	0.9553	0.8711	yes	no
Q3ASI0	FOLD_CHLCH	3, ., 5, ., 4, ., 9	0.5131	0.9776	0.8915	yes	no
B3EJG9	FOLD_CHLPB	3, ., 5, ., 4, ., 9	0.5092	0.9925	0.8959	yes	no
A9WZ75	FOLD_BRUSI	3, ., 5, ., 4, ., 9	0.4756	0.9851	0.8862	yes	no
B3QUL4	FOLD_CHLT3	3, ., 5, ., 4, ., 9	0.4810	0.9665	0.8843	yes	no
C3P7W0	FOLD_BACAA	3, ., 5, ., 4, ., 9	0.5019	0.9479	0.8916	yes	no
A0LE04	FOLD_MAGSM	3, ., 5, ., 4, ., 9	0.5384	0.9368	0.8842	yes	no
Q2YL33	FOLD_BRUA2	3, ., 5, ., 4, ., 9	0.4756	0.9851	0.8862	yes	no
B4SGR4	FOLD_PELPB	3, ., 5, ., 4, ., 9	0.5209	0.9628	0.8779	yes	no
Q73RS2	FOLD_TREDE	3, ., 5, ., 4, ., 9	0.4962	0.9814	0.9010	yes	no
Q81M50	FOLD_BACAN	3, ., 5, ., 4, ., 9	0.5019	0.9479	0.8916	yes	no
Q578R0	FOLD_BRUAB	3, ., 5, ., 4, ., 9	0.4756	0.9851	0.8862	yes	no
Q2RIB4	FOLD_MOOTA	3, ., 5, ., 4, ., 9	0.5190	0.9442	0.9071	yes	no
C4ZBG7	FOLD_EUBR3	3, ., 5, ., 4, ., 9	0.5196	0.9144	0.8817	yes	no
A1BF67	FOLD_CHLPD	3, ., 5, ., 4, ., 9	0.5074	0.9814	0.8949	yes	no
B9DUU0	FOLD_STRU0	3, ., 5, ., 4, ., 9	0.4810	0.9516	0.9014	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.4.9	0.914
3rd Layer	3.5.4	0.921
3rd Layer	1.5.1	0.921
4th Layer	1.5.1.5	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	269
PLN02897	345	PLN02897, PLN02897, tetrahydrofolate dehydrogenase	1e-180
PLN02616	364	PLN02616, PLN02616, tetrahydrofolate dehydrogenase	1e-147
PLN02516	299	PLN02516, PLN02516, methylenetetrahydrofolate dehy	1e-132
COG0190	283	COG0190, FolD, 5,10-methylene-tetrahydrofolate deh	1e-115
PRK14190	284	PRK14190, PRK14190, bifunctional 5,10-methylene-te	1e-108
PRK10792	285	PRK10792, PRK10792, bifunctional 5,10-methylene-te	1e-104
PRK14189	285	PRK14189, PRK14189, bifunctional 5,10-methylene-te	1e-101
PRK14188	296	PRK14188, PRK14188, bifunctional 5,10-methylene-te	1e-101
PRK14174	295	PRK14174, PRK14174, bifunctional 5,10-methylene-te	1e-100
PRK14191	285	PRK14191, PRK14191, bifunctional 5,10-methylene-te	1e-100
PRK14186	297	PRK14186, PRK14186, bifunctional 5,10-methylene-te	3e-98
PRK14179	284	PRK14179, PRK14179, bifunctional 5,10-methylene-te	4e-96
PRK14185	293	PRK14185, PRK14185, bifunctional 5,10-methylene-te	4e-92
PRK14168	297	PRK14168, PRK14168, bifunctional 5,10-methylene-te	3e-91
PRK14170	284	PRK14170, PRK14170, bifunctional 5,10-methylene-te	4e-89
PRK14194	301	PRK14194, PRK14194, bifunctional 5,10-methylene-te	6e-87
PRK14183	281	PRK14183, PRK14183, bifunctional 5,10-methylene-te	1e-86
PRK14193	284	PRK14193, PRK14193, bifunctional 5,10-methylene-te	1e-84
cd01080	168	cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding	1e-84
PRK14184	286	PRK14184, PRK14184, bifunctional 5,10-methylene-te	2e-84
PRK14167	297	PRK14167, PRK14167, bifunctional 5,10-methylene-te	5e-84
PRK14176	287	PRK14176, PRK14176, bifunctional 5,10-methylene-te	3e-83
pfam02882	160	pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydro	3e-83
PRK14175	286	PRK14175, PRK14175, bifunctional 5,10-methylene-te	5e-83
PRK14166	282	PRK14166, PRK14166, bifunctional 5,10-methylene-te	3e-82
PRK14187	294	PRK14187, PRK14187, bifunctional 5,10-methylene-te	5e-82
PRK14178	279	PRK14178, PRK14178, bifunctional 5,10-methylene-te	6e-79
PRK14182	282	PRK14182, PRK14182, bifunctional 5,10-methylene-te	4e-77
PRK14172	278	PRK14172, PRK14172, bifunctional 5,10-methylene-te	1e-75
PRK14173	287	PRK14173, PRK14173, bifunctional 5,10-methylene-te	3e-75
PRK14181	287	PRK14181, PRK14181, bifunctional 5,10-methylene-te	5e-74
PRK14169	282	PRK14169, PRK14169, bifunctional 5,10-methylene-te	2e-72
PRK14192	283	PRK14192, PRK14192, bifunctional 5,10-methylene-te	8e-72
PRK14171	288	PRK14171, PRK14171, bifunctional 5,10-methylene-te	3e-71
PRK14180	282	PRK14180, PRK14180, bifunctional 5,10-methylene-te	2e-68
PRK14177	284	PRK14177, PRK14177, bifunctional 5,10-methylene-te	1e-66
pfam00763	117	pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydroge	7e-41
cd05212	140	cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) b	2e-28
cd01079	197	cd01079, NAD_bind_m-THF_DH, NAD binding domain of	1e-14

>gnl|CDD|178485 PLN02897, PLN02897, tetrahydrofolate dehydrogenase/cyclohydrolase, putative

 Score =  499 bits (1286), Expect = e-180
 Identities = 209/266 (78%), Positives = 240/266 (90%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MKK++GKVPGLAV+LVG++RDSQTYVRNKIKACEE GIKS++ E  + CTE ++L+AL  
Sbjct: 79  MKKAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRK 138

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N+D+SI+GILVQLPLPQHLDE KIL+ V LEKDVDGFHPLN+GNLAMRGREPLF+ CTP
Sbjct: 139 FNEDTSIHGILVQLPLPQHLDESKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTP 198

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGC+ELLIRSGVEI GKNAVVIGRSNIVGLP SLLLQRH ATVS VHA TK+PEQIT +A
Sbjct: 199 KGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRKA 258

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DIVIAAAG+ NLVRGSWLKPGAVV+DVGT PV+D SCE+GYRL+GDVCYEEA+ +AS IT
Sbjct: 259 DIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVEDSSCEFGYRLVGDVCYEEALGVASAIT 318

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRAY 266
           PVPGGVGPMT+ MLL NTLD+AKR +
Sbjct: 319 PVPGGVGPMTITMLLCNTLDAAKRIF 344

Length = 345

>gnl|CDD|215332 PLN02616, PLN02616, tetrahydrofolate dehydrogenase/cyclohydrolase, putative

 Score =  415 bits (1067), Expect = e-147
 Identities = 192/268 (71%), Positives = 221/268 (82%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           MK+SIG VPGLAVILVG+R+DS TYVRNK KAC+ VGI S      +  TE EVL  +S 
Sbjct: 96  MKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISG 155

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           +N D S++GILVQLPLP H+DE  IL+AVS+EKDVDGFHPLNIG LAMRGREPLF+PCTP
Sbjct: 156 FNNDPSVHGILVQLPLPSHMDEQNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTP 215

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGCIELL R  VEI GK AVVIGRSNIVG+P +LLLQR  ATVSIVH+ TKNPE+IT EA
Sbjct: 216 KGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITREA 275

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DI+I+A G  N+VRGSW+KPGAVV+DVG  PV+D S   GYRL+GDVCYEEA ++AS +T
Sbjct: 276 DIIISAVGQPNMVRGSWIKPGAVVIDVGINPVEDASSPRGYRLVGDVCYEEACKVASAVT 335

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRAYGF 268
           PVPGGVGPMT+AMLLSNTL SAKR + F
Sbjct: 336 PVPGGVGPMTIAMLLSNTLTSAKRIHNF 363

Length = 364

>gnl|CDD|178131 PLN02516, PLN02516, methylenetetrahydrofolate dehydrogenase (NADP+)

 Score =  375 bits (965), Expect = e-132
 Identities = 167/267 (62%), Positives = 209/267 (78%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           + +  GKVPGLAV++VG R+DSQTYV  K KAC EVGIKS   +  +  +E E+++ +  
Sbjct: 32  LSEKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHE 91

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N +  ++GILVQLPLP+H++E KIL+ +SLEKDVDGFHPLNIG LAM+GREPLF+PCTP
Sbjct: 92  LNANPDVHGILVQLPLPKHINEEKILNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTP 151

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGC+ELL RSG+ I GK AVV+GRSNIVGLP SLLL +  ATV++VH+ T +PE I  EA
Sbjct: 152 KGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPESIVREA 211

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DIVIAAAG A +++G W+KPGA V+DVGT  V DPS + GYRL+GDV + E  ++A  IT
Sbjct: 212 DIVIAAAGQAMMIKGDWIKPGAAVIDVGTNAVSDPSKKSGYRLVGDVDFAEVSKVAGWIT 271

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRAYG 267
           PVPGGVGPMTVAMLL NT+D AKR + 
Sbjct: 272 PVPGGVGPMTVAMLLKNTVDGAKRVFA 298

Length = 299

>gnl|CDD|223268 COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

 Score =  332 bits (853), Expect = e-115
 Identities = 139/265 (52%), Positives = 180/265 (67%), Gaps = 8/265 (3%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K   G  PGLAVILVG+   SQ YVR+K KA EE+GI S + +  +  TE+E+L  +  
Sbjct: 23  LKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDE 82

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N D  ++GILVQLPLP+HLDE K+L A+  EKDVDGFHP N+G LA    EP F+PCTP
Sbjct: 83  LNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLA--QGEPGFLPCTP 140

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
            G + LL   G+++ GKN VV+GRSNIVG P +LLL   +ATV++ H+ TK+   IT  A
Sbjct: 141 AGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNA 200

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DIV+ A G  + ++   +KPGAVV+DVG   V+D       +L+GDV ++     AS IT
Sbjct: 201 DIVVVAVGKPHFIKADMVKPGAVVIDVGINRVND------GKLVGDVDFDSVKEKASAIT 254

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRA 265
           PVPGGVGPMTVAMLL NTL +A+R 
Sbjct: 255 PVPGGVGPMTVAMLLENTLKAAERQ 279

Length = 283

>gnl|CDD|184560 PRK14190, PRK14190, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  314 bits (807), Expect = e-108
 Identities = 134/265 (50%), Positives = 175/265 (66%), Gaps = 8/265 (3%)

Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
           K  G VPGLAVILVG+   S +YVR K KA E+VGI S + EF    TE+E+L  +   N
Sbjct: 27  KEQGIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLN 86

Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
            D  INGILVQLPLP+H+DE  +++ +S EKDVDGFHP+N+G + +   +  F+PCTP G
Sbjct: 87  ADPRINGILVQLPLPKHIDEKAVIERISPEKDVDGFHPINVGRMML--GQDTFLPCTPHG 144

Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
            +ELL    ++I GK+ VV+GRSNIVG P   LL   +ATV+  H+ TKN  ++T +ADI
Sbjct: 145 ILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKNLAELTKQADI 204

Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPV 242
           +I A G   L+    +K GAVV+DVG   +     E G  L GDV ++     AS ITPV
Sbjct: 205 LIVAVGKPKLITADMVKEGAVVIDVGVNRL-----ENGK-LCGDVDFDNVKEKASYITPV 258

Query: 243 PGGVGPMTVAMLLSNTLDSAKRAYG 267
           PGGVGPMT+ ML+ NT++ AKRA G
Sbjct: 259 PGGVGPMTITMLMHNTVELAKRAGG 283

Length = 284

>gnl|CDD|236760 PRK10792, PRK10792, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  305 bits (783), Expect = e-104
 Identities = 127/256 (49%), Positives = 163/256 (63%), Gaps = 8/256 (3%)

Query: 7   KVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSS 66
           + PGLAV+LVG    SQ YV +K KACEEVG  S   +  +  +E E+L  +   N D +
Sbjct: 32  RAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADPT 91

Query: 67  INGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIEL 126
           I+GILVQLPLP H+D  K+L+ +  +KDVDGFHP N+G LA   R PL  PCTP+G + L
Sbjct: 92  IDGILVQLPLPAHIDNVKVLERIHPDKDVDGFHPYNVGRLAQ--RIPLLRPCTPRGIMTL 149

Query: 127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAA 186
           L R G++  G NAVV+G SNIVG P SL L     TV++ H  TKN       AD+++ A
Sbjct: 150 LERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVA 209

Query: 187 AGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 246
            G    + G W+KPGA+V+DVG   ++D       +L+GDV +E A   AS ITPVPGGV
Sbjct: 210 VGKPGFIPGEWIKPGAIVIDVGINRLEDG------KLVGDVEFETAAERASWITPVPGGV 263

Query: 247 GPMTVAMLLSNTLDSA 262
           GPMTVA LL NTL + 
Sbjct: 264 GPMTVATLLENTLQAC 279

Length = 285

>gnl|CDD|184559 PRK14189, PRK14189, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  297 bits (762), Expect = e-101
 Identities = 129/262 (49%), Positives = 174/262 (66%), Gaps = 8/262 (3%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           G  PGLAVILVG+   SQ YVRNK+KACE+ G  S+   +    +E E+L  +   N+D 
Sbjct: 30  GHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDP 89

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
            I+GILVQLPLP+H+D  K+++A++ EKDVDGFH  N G L M G +PLF PCTP G ++
Sbjct: 90  KIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAGAL-MTG-QPLFRPCTPYGVMK 147

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
           +L   G+ + G +AVVIGRSNIVG P ++LL +  ATV+I H+ T++    T +ADIV+A
Sbjct: 148 MLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVA 207

Query: 186 AAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 245
           A G  N++    +KPGA V+DVG    D        +L GDV +     +A  ITPVPGG
Sbjct: 208 AVGKRNVLTADMVKPGATVIDVGMNRDDAG------KLCGDVDFAGVKEVAGYITPVPGG 261

Query: 246 VGPMTVAMLLSNTLDSAKRAYG 267
           VGPMT+ MLL NT+++A+RA  
Sbjct: 262 VGPMTITMLLVNTIEAAERAAA 283

Length = 285

>gnl|CDD|184558 PRK14188, PRK14188, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  296 bits (761), Expect = e-101
 Identities = 130/268 (48%), Positives = 174/268 (64%), Gaps = 3/268 (1%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K + G  PGLAV+LVGE   SQ YVR+K K  +E G+ S   +     ++ E+L  ++ 
Sbjct: 25  LKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIAR 84

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N D +I+GILVQLPLP+HLD   ++ A+  EKDVDG H +N G LA    E   +PCTP
Sbjct: 85  LNADPAIHGILVQLPLPKHLDSEAVIQAIDPEKDVDGLHVVNAGRLA--TGETALVPCTP 142

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
            GC+ LL R   ++ G NAVVIGRSN+VG P + LL   +ATV+I H+ T++   +   A
Sbjct: 143 LGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRA 202

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYG-YRLMGDVCYEEAMRLASVI 239
           DI++AA G   +V+G W+KPGA V+DVG   +  P    G  RL+GDV + EA  +A  I
Sbjct: 203 DILVAAVGRPEMVKGDWIKPGATVIDVGINRIPAPEKGEGKTRLVGDVAFAEAAEVAGAI 262

Query: 240 TPVPGGVGPMTVAMLLSNTLDSAKRAYG 267
           TPVPGGVGPMT+A LL+NTL +A RA G
Sbjct: 263 TPVPGGVGPMTIACLLANTLTAACRAAG 290

Length = 296

>gnl|CDD|172662 PRK14174, PRK14174, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  293 bits (752), Expect = e-100
 Identities = 137/270 (50%), Positives = 177/270 (65%), Gaps = 4/270 (1%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
           +   GKVPGL VI+VGE   SQ YVRNK K+C+E+G+ S V E     TE+ +L  + + 
Sbjct: 25  RAKTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDL 84

Query: 62  NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPK 121
           N D  ++GILVQ PLP+ +DE  +  A+   KDVDGFHP N+G L M   +  F+ CTP 
Sbjct: 85  NNDPDVHGILVQQPLPKQIDEFAVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPY 144

Query: 122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRHHA---TVSIVHALTKNPEQIT 177
           G +ELL R  +E  GK+ VV+GRSNIVG P  +L+LQ+      TV+I H+ TK+    T
Sbjct: 145 GILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATKDIPSYT 204

Query: 178 SEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLAS 237
            +ADI+IAA G A  +    +KPGAVV+DVG   ++DPS + GYRL+GDV YE     AS
Sbjct: 205 RQADILIAAIGKARFITADMVKPGAVVIDVGINRIEDPSTKSGYRLVGDVDYEGVSAKAS 264

Query: 238 VITPVPGGVGPMTVAMLLSNTLDSAKRAYG 267
            ITPVPGGVGPMT+AMLL NTL S +R   
Sbjct: 265 AITPVPGGVGPMTIAMLLKNTLQSFERVNN 294

Length = 295

>gnl|CDD|172679 PRK14191, PRK14191, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  293 bits (751), Expect = e-100
 Identities = 127/263 (48%), Positives = 168/263 (63%), Gaps = 8/263 (3%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +    GK P LAVILVG+   SQTYV  KIKACE VG+ S +    +  TE E+L+ + +
Sbjct: 24  LTAQTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKD 83

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N D +I+GILVQLPLP+H+D   +L+A+   KDVDGFHPLNIG L     +  F+P TP
Sbjct: 84  LNTDQNIDGILVQLPLPRHIDTKMVLEAIDPNKDVDGFHPLNIGKLCS-QLDG-FVPATP 141

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
            G + LL    +EI GK+ V+IG SNIVG P ++L+    A+VS+ H LTK+    T  A
Sbjct: 142 MGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNA 201

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DIV    G  +L++ S +K GAVV+D+G   ++D       RL+GDV +E     AS IT
Sbjct: 202 DIVCVGVGKPDLIKASMVKKGAVVVDIGINRLNDG------RLVGDVDFENVAPKASFIT 255

Query: 241 PVPGGVGPMTVAMLLSNTLDSAK 263
           PVPGGVGPMT+  LL NTL +A+
Sbjct: 256 PVPGGVGPMTIVSLLENTLIAAE 278

Length = 285

>gnl|CDD|237636 PRK14186, PRK14186, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  289 bits (741), Expect = 3e-98
 Identities = 128/266 (48%), Positives = 171/266 (64%), Gaps = 4/266 (1%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
               G+ PGLAV+ VG+   S  YVRNK KAC  VGI S         ++ EV   ++  
Sbjct: 26  LPKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQL 85

Query: 62  NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPK 121
           NQD  ++GIL+QLPLP+HLDE  +L A+  +KD DG HPLN+G L ++G EP    CTP 
Sbjct: 86  NQDERVDGILLQLPLPKHLDEVPLLHAIDPDKDADGLHPLNLGRL-VKG-EPGLRSCTPA 143

Query: 122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEAD 181
           G + LL    ++I GK AVV+GRS +VG P +L+L   +ATV+I H+ T++   IT EAD
Sbjct: 144 GVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQDLASITREAD 203

Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITP 241
           I++AAAG  NL+    +KPGAVV+DVG   +     +   RL GDV +EE   +A+ ITP
Sbjct: 204 ILVAAAGRPNLIGAEMVKPGAVVVDVGIHRLPSSDGK--TRLCGDVDFEEVEPVAAAITP 261

Query: 242 VPGGVGPMTVAMLLSNTLDSAKRAYG 267
           VPGGVGPMTV MLL NT+ S ++ +G
Sbjct: 262 VPGGVGPMTVTMLLVNTVLSWQKRHG 287

Length = 297

>gnl|CDD|237634 PRK14179, PRK14179, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  283 bits (726), Expect = 4e-96
 Identities = 126/264 (47%), Positives = 177/264 (67%), Gaps = 8/264 (3%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K+  G VPGL VILVG+   SQ YVRNK ++    G KS V    +  +++E+L+ +  
Sbjct: 25  LKEEKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIER 84

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           YNQD + +GILVQLPLP+H++E KIL A+  +KDVDGFHP+N G+L   GR P+ IPCTP
Sbjct: 85  YNQDPTWHGILVQLPLPKHINEEKILLAIDPKKDVDGFHPMNTGHL-WSGR-PVMIPCTP 142

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
            G +E+     VE+ GK+AVVIGRSNIVG P + LL   +ATV++ H+ T+N  ++  +A
Sbjct: 143 AGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKA 202

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DI++ A G  + V   ++K GAVV+DVG    ++       +L+GDV ++E   +AS IT
Sbjct: 203 DILVVAIGRGHFVTKEFVKEGAVVIDVGMNRDENG------KLIGDVDFDEVAEVASYIT 256

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKR 264
           PVPGGVGPMT+ ML+  T  +A R
Sbjct: 257 PVPGGVGPMTITMLMEQTYQAALR 280

Length = 284

>gnl|CDD|184556 PRK14185, PRK14185, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  273 bits (700), Expect = 4e-92
 Identities = 125/265 (47%), Positives = 174/265 (65%), Gaps = 6/265 (2%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           GK P LA ILVG    S+TYV NK+KACEE G KS +  +    TE+E+L  +   NQD 
Sbjct: 29  GKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQDD 88

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
            ++G +VQLPLP+H+ E K+++A+   KDVDGFHP+N+G +++    P F+  TP G +E
Sbjct: 89  DVDGFIVQLPLPKHISEQKVIEAIDYRKDVDGFHPINVGRMSI--GLPCFVSATPNGILE 146

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRHH---ATVSIVHALTKNPEQITSEAD 181
           LL R  +E  GK  VV+GRSNIVG P   L++Q+ +    TV++ H+ +KN ++   EAD
Sbjct: 147 LLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLEAD 206

Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITP 241
           I+IAA G    V+   +K GAVV+DVGT  V D + + G++L GDV ++E     S ITP
Sbjct: 207 IIIAALGQPEFVKADMVKEGAVVIDVGTTRVPDATRKSGFKLTGDVKFDEVAPKCSYITP 266

Query: 242 VPGGVGPMTVAMLLSNTLDSAKRAY 266
           VPGGVGPMT+  L+ NTL + K+A 
Sbjct: 267 VPGGVGPMTIVSLMKNTLLAGKKAI 291

Length = 293

>gnl|CDD|237633 PRK14168, PRK14168, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  271 bits (694), Expect = 3e-91
 Identities = 135/272 (49%), Positives = 175/272 (64%), Gaps = 4/272 (1%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K+  GKVPGL  ILVGE   S +YV  KIK    +G   I    +   TE+E+L  +  
Sbjct: 26  LKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDK 85

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
           YN D SI+GILVQLPLP+H++E K+L+A+  +KDVDGFHP+N+G L + G E  F+PCTP
Sbjct: 86  YNNDDSIHGILVQLPLPKHINEKKVLNAIDPDKDVDGFHPVNVGRLMIGGDEVKFLPCTP 145

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HATVSIVHALTKNPEQI 176
            G  E+L+RSGVE  G   VV+GRSNIVG P + ++ +     +ATV+IVH  +KN  + 
Sbjct: 146 AGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRSKNLARH 205

Query: 177 TSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLA 236
              ADI+I AAGV NLV+  W+KPGA V+DVG   V          L GDV ++    +A
Sbjct: 206 CQRADILIVAAGVPNLVKPEWIKPGATVIDVGVNRVGTNESTGKAILSGDVDFDAVKEIA 265

Query: 237 SVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF 268
             ITPVPGGVGPMT+AML+ NTL SAK     
Sbjct: 266 GKITPVPGGVGPMTIAMLMRNTLKSAKFHLSL 297

Length = 297

>gnl|CDD|172658 PRK14170, PRK14170, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  265 bits (679), Expect = 4e-89
 Identities = 134/262 (51%), Positives = 189/262 (72%), Gaps = 8/262 (3%)

Query: 5   IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQD 64
            GK PGLAV+LVG+ + S+TYVRNK K  EE G+KS++ E  +  TE+++L+ +   N+D
Sbjct: 28  EGKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNED 87

Query: 65  SSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCI 124
            +I+GILVQLPLP+H+ E K++D +S +KDVDGFHP+N+GNL + G++  F+PCTP G I
Sbjct: 88  KTIHGILVQLPLPEHISEEKVIDTISYDKDVDGFHPVNVGNLFI-GKDS-FVPCTPAGII 145

Query: 125 ELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVI 184
           EL+  +G +I GK AVVIGRSNIVG P + LL   +ATV+I H+ TK+  Q+  EADI++
Sbjct: 146 ELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILV 205

Query: 185 AAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPG 244
            A G+A  V+  ++KPGA+V+DVG         +   +L GDV +++ +  A  ITPVPG
Sbjct: 206 VATGLAKFVKKDYIKPGAIVIDVGM------DRDENNKLCGDVDFDDVVEEAGFITPVPG 259

Query: 245 GVGPMTVAMLLSNTLDSAKRAY 266
           GVGPMT+ MLL+NTL +AKR +
Sbjct: 260 GVGPMTITMLLANTLKAAKRIW 281

Length = 284

>gnl|CDD|172682 PRK14194, PRK14194, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  260 bits (667), Expect = 6e-87
 Identities = 127/261 (48%), Positives = 176/261 (67%), Gaps = 5/261 (1%)

Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
           K+ G  P LAVILVG    SQ YVRNKI   EE GI+S+        ++  +L  ++  N
Sbjct: 28  KAAGIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELN 87

Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
            D S+NGIL+QLPLP H+DE ++L A++  KDVDGFH  N+G L+ +GR+ L  PCTP G
Sbjct: 88  ADPSVNGILLQLPLPAHIDEARVLQAINPLKDVDGFHSENVGGLS-QGRDVL-TPCTPSG 145

Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
           C+ LL  +  ++ GK+AVVIGRSNIVG P + LL + H +V++VH+ + + + +  +ADI
Sbjct: 146 CLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADI 205

Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPV 242
           V+AA G   L+   WLKPGAVV+DVG   +DD       RL+GDV ++ A+ + S ITPV
Sbjct: 206 VVAAVGRPRLIDADWLKPGAVVIDVGINRIDDDGRS---RLVGDVDFDSALPVVSAITPV 262

Query: 243 PGGVGPMTVAMLLSNTLDSAK 263
           PGGVGPMT+A L+ NT+ +A+
Sbjct: 263 PGGVGPMTIAFLMKNTVTAAR 283

Length = 301

>gnl|CDD|184555 PRK14183, PRK14183, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  258 bits (662), Expect = 1e-86
 Identities = 129/263 (49%), Positives = 172/263 (65%), Gaps = 8/263 (3%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K     VPGLAVILVG+   S TYV+ K KAC+ VGI SI  E     ++ E+L  ++ 
Sbjct: 24  LKLVKNIVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAM 83

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N + +I+GILVQLPLP+H+D  KIL+A+  +KDVDGFHP N+G L + G +  F+PCTP
Sbjct: 84  MNNNPNIDGILVQLPLPKHIDTTKILEAIDPKKDVDGFHPYNVGRL-VTGLDG-FVPCTP 141

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
            G +ELL    +++ GK+  V+G SNIVG P + LL   +ATV I H  TK+ +  T +A
Sbjct: 142 LGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKA 201

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DIVI   G  NL+    +K GA+V+D+G    +D       RL+GDV +E   +  S IT
Sbjct: 202 DIVIVGVGKPNLITEDMVKEGAIVIDIGINRTEDG------RLVGDVDFENVAKKCSYIT 255

Query: 241 PVPGGVGPMTVAMLLSNTLDSAK 263
           PVPGGVGPMT+AMLLSNTL +AK
Sbjct: 256 PVPGGVGPMTIAMLLSNTLKAAK 278

Length = 281

>gnl|CDD|237637 PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  254 bits (651), Expect = 1e-84
 Identities = 120/270 (44%), Positives = 158/270 (58%), Gaps = 17/270 (6%)

Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
           K  G  PGL  +LVG+   SQ YVR K + C EVGI SI  +     T++E+   +   N
Sbjct: 27  KEKGITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELN 86

Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
            D +  G +VQLPLP+HLDE  +L+ +   KD DG HP N+G L +    PL  PCTP+G
Sbjct: 87  ADPACTGYIVQLPLPKHLDENAVLERIDPAKDADGLHPTNLGRLVLNEPAPL--PCTPRG 144

Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALTKNPEQITSEA 180
            + LL R  VE+ G + VVIGR   VG P  LLL R    ATV++ H  T++    T  A
Sbjct: 145 IVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTRDLAAHTRRA 204

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDV---CYEEAMRLAS 237
           DI++AAAGVA+LV    +KPGA VLDVG     D       +L+GDV    +E    +A 
Sbjct: 205 DIIVAAAGVAHLVTADMVKPGAAVLDVGVSRAGD------GKLVGDVHPDVWE----VAG 254

Query: 238 VITPVPGGVGPMTVAMLLSNTLDSAKRAYG 267
            ++P PGGVGPMT A LL+N ++ A+R  G
Sbjct: 255 AVSPNPGGVGPMTRAFLLTNVVERAERRAG 284

Length = 284

>gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

 Score =  249 bits (639), Expect = 1e-84
 Identities = 98/172 (56%), Positives = 124/172 (72%), Gaps = 5/172 (2%)

Query: 92  EKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLP 151
           EKDVDG HP+N+G LA+    P FIPCTP G +ELL R G+++ GK  VV+GRSNIVG P
Sbjct: 2   EKDVDGLHPVNLGRLALGR--PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKP 59

Query: 152 TSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCP 211
            + LL   +ATV++ H+ TKN ++ T +ADIVI A G   LV+G  +KPGAVV+DVG   
Sbjct: 60  LAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINR 119

Query: 212 VDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 263
           V D S   G +L+GDV +E A   AS ITPVPGGVGPMTVAML+ NT+++AK
Sbjct: 120 VPDKS---GGKLVGDVDFESAKEKASAITPVPGGVGPMTVAMLMKNTVEAAK 168

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well as bifunctional m-THF m-THF DHm-THF DHDH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains the bifunctional DH/cyclohydrolase. M-THF DH, like other amino acid DH-like NAD(P)-binding domains, is a member of the Rossmann fold superfamily which includes glutamate, leucine, and phenylalanine DHs, m-THF DH, methylene-tetrahydromethanopterin DH, m-THF DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. Length = 168

>gnl|CDD|237635 PRK14184, PRK14184, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  253 bits (649), Expect = 2e-84
 Identities = 124/262 (47%), Positives = 160/262 (61%), Gaps = 13/262 (4%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           G+ PGLAVILVGE   SQ YVRNK +ACE+ GI S         T++E+ + ++  N   
Sbjct: 29  GRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNARP 88

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
            I+GIL+QLPLP+ LD  + L+ +   KDVDGFHP N+G LA+    P F PCTP G + 
Sbjct: 89  DIDGILLQLPLPKGLDSQRCLELIDPAKDVDGFHPENMGRLAL--GLPGFRPCTPAGVMT 146

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HATVSIVHALTKNPEQITSEAD 181
           LL R G+   GK AVV+GRSNIVG P +L+L       +ATV++ H+ T +  +   EAD
Sbjct: 147 LLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTPDLAEECREAD 206

Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITP 241
            +  A G    V    +KPGAVV+DVG    DD        L+GD  +E    +AS ITP
Sbjct: 207 FLFVAIGRPRFVTADMVKPGAVVVDVGINRTDDG-------LVGDCDFEGLSDVASAITP 259

Query: 242 VPGGVGPMTVAMLLSNTLDSAK 263
           VPGGVGPMT+A LL NT+ S K
Sbjct: 260 VPGGVGPMTIAQLLVNTVQSWK 281

Length = 286

>gnl|CDD|184549 PRK14167, PRK14167, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  253 bits (647), Expect = 5e-84
 Identities = 124/266 (46%), Positives = 167/266 (62%), Gaps = 7/266 (2%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           G  PGLA +L+ +   S+TYV  K + CEEVGI++I  E       +E+ + +   N D 
Sbjct: 29  GVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADE 88

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
            ++GILVQ+P+P H+D+ ++L  +   KDVDGFHP N+G L     +  F PCTP G  +
Sbjct: 89  DVHGILVQMPVPDHVDDREVLRRIDPAKDVDGFHPENVGRLV--AGDARFKPCTPHGIQK 146

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRHH---ATVSIVHALTKNPEQITSEAD 181
           LL  +GV+  G + VV+GRS+IVG P  +LL+Q+     ATV++ H+ T +    T  AD
Sbjct: 147 LLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRTDDLAAKTRRAD 206

Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITP 241
           IV+AAAGV  L+ GS L  GA V+DVG   VD  + E GY L+GDV +E A   AS ITP
Sbjct: 207 IVVAAAGVPELIDGSMLSEGATVIDVGINRVDADT-EKGYELVGDVEFESAKEKASAITP 265

Query: 242 VPGGVGPMTVAMLLSNTLDSAKRAYG 267
           VPGGVGPMT AMLL NT+ +A    G
Sbjct: 266 VPGGVGPMTRAMLLYNTVKAASLQEG 291

Length = 297

>gnl|CDD|184553 PRK14176, PRK14176, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  250 bits (641), Expect = 3e-83
 Identities = 117/266 (43%), Positives = 172/266 (64%), Gaps = 9/266 (3%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K + G  PGLA ILVG+   S+ YVR K KACE VGI++         T++E+L  + +
Sbjct: 31  LKSNRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDS 90

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N+   ++GIL+QLPLP+HLD  + ++A+   KD DGFHP N+G L M G E   +PCTP
Sbjct: 91  LNKRKDVHGILLQLPLPKHLDPQEAMEAIDPAKDADGFHPYNMGKL-MIGDEG-LVPCTP 148

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
            G I  L   GV+I GKNAV++G SN+VG P + +L   +ATVS+ H  T + ++ T +A
Sbjct: 149 HGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDA 208

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DI++ A GV +L++   +K GAV+ DVG    +D       ++ GDV +E  ++ AS+IT
Sbjct: 209 DILVVATGVKHLIKADMVKEGAVIFDVGITKEED-------KVYGDVDFENVIKKASLIT 261

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRAY 266
           PVPGGVGP+T+AML+ + L  A+++ 
Sbjct: 262 PVPGGVGPLTIAMLMKHVLMCAEKSL 287

Length = 287

>gnl|CDD|217267 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain

 Score =  246 bits (630), Expect = 3e-83
 Identities = 91/167 (54%), Positives = 119/167 (71%), Gaps = 8/167 (4%)

Query: 99  HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR 158
           HP+N+G L +   EP F+PCTP+G +ELL R G+++ GKN VVIGRSNIVG P +LLL  
Sbjct: 1   HPINLGRLVLG--EPGFVPCTPRGIMELLKRYGIDLAGKNVVVIGRSNIVGKPLALLLLN 58

Query: 159 HHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCE 218
            +ATV++ H+ TK+  +IT EADIV+ A G   L++  W+KPGAVV+DVG   V+     
Sbjct: 59  ANATVTVCHSKTKDLAEITREADIVVVAVGKPGLIKADWVKPGAVVIDVGINRVE----- 113

Query: 219 YGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA 265
              +L+GDV +E     AS ITPVPGGVGPMTVAMLL NT+++AKR 
Sbjct: 114 -NGKLVGDVDFENVKEKASAITPVPGGVGPMTVAMLLQNTVEAAKRQ 159

Length = 160

>gnl|CDD|184552 PRK14175, PRK14175, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  250 bits (639), Expect = 5e-83
 Identities = 125/267 (46%), Positives = 179/267 (67%), Gaps = 8/267 (2%)

Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
           K  G  P L+VILVG    SQ+YVR+K KA E++G+ S +    +  TE+EVLN L+  N
Sbjct: 27  KEKGFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLN 86

Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
            D S++GILVQ+PLP+ + E KIL+A++ EKDVDGFHP+NIG L +   E  F+PCTP G
Sbjct: 87  NDDSVSGILVQVPLPKQVSEQKILEAINPEKDVDGFHPINIGKLYI--DEQTFVPCTPLG 144

Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
            +E+L  + +++ GKNAVVIGRS+IVG P S LL + +A+V+I+H+ +K+      +AD+
Sbjct: 145 IMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADV 204

Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPV 242
           +++A G   LV    +K GAV++DVG  P ++       +L GDV Y+    +A  ITPV
Sbjct: 205 IVSAVGKPGLVTKDVVKEGAVIIDVGNTPDENG------KLKGDVDYDAVKEIAGAITPV 258

Query: 243 PGGVGPMTVAMLLSNTLDSAKRAYGFT 269
           PGGVGP+T+ M+L+NTL + K   G  
Sbjct: 259 PGGVGPLTITMVLNNTLLAEKMRRGID 285

Length = 286

>gnl|CDD|172654 PRK14166, PRK14166, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  248 bits (633), Expect = 3e-82
 Identities = 128/261 (49%), Positives = 177/261 (67%), Gaps = 7/261 (2%)

Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
           KS G    LAVILVG+   SQTYV++K KACEE GIKS+V    +  T++E+L  ++  N
Sbjct: 25  KSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLN 84

Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
            D S++GILVQLPLP H+ +  IL+++   KDVDGFHP+N+G L + G E  F+PCTP G
Sbjct: 85  HDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNL-GLESGFLPCTPLG 143

Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
            ++LL    +++ GK+AV+IG SNIVG P + +L    ATVS+ H  TK+    T +AD+
Sbjct: 144 VMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADL 203

Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPV 242
           +I AAG  NL+R   +K G +V+DVG   ++        +++GDV +EE  + +S ITPV
Sbjct: 204 IIVAAGCVNLLRSDMVKEGVIVVDVGINRLESG------KIVGDVDFEEVSKKSSYITPV 257

Query: 243 PGGVGPMTVAMLLSNTLDSAK 263
           PGGVGPMT+AMLL NT+ SAK
Sbjct: 258 PGGVGPMTIAMLLENTVKSAK 278

Length = 282

>gnl|CDD|172675 PRK14187, PRK14187, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  247 bits (633), Expect = 5e-82
 Identities = 114/262 (43%), Positives = 167/262 (63%), Gaps = 3/262 (1%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K+     P L VILVG+   SQ YVRNK +  E +G++S         +E  ++  ++ 
Sbjct: 25  LKRQHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINE 84

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N D S++GILVQLP+P H+D+  I++ +  EKDVDGFH  N+G L    ++   IPCTP
Sbjct: 85  LNNDDSVHGILVQLPVPNHIDKNLIINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTP 144

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KGC+ L+      + G +AVVIGRSNIVG P + LL   + TV+ VH+ T++     S+A
Sbjct: 145 KGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADYCSKA 204

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DI++AA G+ N V+ SW+K GA+V+DVG   +++   +   + +GDV + E  + AS IT
Sbjct: 205 DILVAAVGIPNFVKYSWIKKGAIVIDVGINSIEEGGVK---KFVGDVDFAEVKKKASAIT 261

Query: 241 PVPGGVGPMTVAMLLSNTLDSA 262
           PVPGGVGPMT+A L+ NT+ +A
Sbjct: 262 PVPGGVGPMTIAFLMVNTVIAA 283

Length = 294

>gnl|CDD|172666 PRK14178, PRK14178, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  239 bits (612), Expect = 6e-79
 Identities = 122/258 (47%), Positives = 160/258 (62%), Gaps = 9/258 (3%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           G  P LA ++VG+   SQ YVR K +ACE VGI S+  E     T   VL  +   N+D 
Sbjct: 24  GLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNEDP 83

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
            INGILVQLPLP+ +D  +++ A+  EKDVDGFHPLN+G L + G  P F PCTP G + 
Sbjct: 84  DINGILVQLPLPKGVDTERVIAAILPEKDVDGFHPLNLGRL-VSGL-PGFAPCTPNGIMT 141

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
           LL    + I GK AVV+GRS  VG P + LL    ATV+I H+ T+N +    +ADI+++
Sbjct: 142 LLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVS 201

Query: 186 AAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 245
           AAG A  +    +KPGA V+DVG   V+        +L GDV ++    +A  ITPVPGG
Sbjct: 202 AAGKAGFITPDMVKPGATVIDVGINQVNG-------KLCGDVDFDAVKEIAGAITPVPGG 254

Query: 246 VGPMTVAMLLSNTLDSAK 263
           VGPMT+A L+ NT D+AK
Sbjct: 255 VGPMTIATLMENTFDAAK 272

Length = 279

>gnl|CDD|172670 PRK14182, PRK14182, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  235 bits (600), Expect = 4e-77
 Identities = 126/262 (48%), Positives = 169/262 (64%), Gaps = 7/262 (2%)

Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
            + G   GL V+ VG+   S  YVR K K CEEVGI S+        T+ E+L  ++  N
Sbjct: 25  AARGVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLN 84

Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
            D +++GILVQLPLP+H+DE  +LDA+S  KD DGFHP N+G L++ G   +  PCTP G
Sbjct: 85  ADPAVHGILVQLPLPKHVDERAVLDAISPAKDADGFHPFNVGALSI-GIAGVPRPCTPAG 143

Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
            + +L  + V+  GK A+V+GRSNIVG P +++L   HATV+I H+ T +       ADI
Sbjct: 144 VMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGRADI 203

Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPV 242
           ++AA G A LV+G+W+K GAVV+DVG   + D       +L+GDV +  A   AS ITPV
Sbjct: 204 LVAAIGKAELVKGAWVKEGAVVIDVGMNRLADG------KLVGDVEFAAAAARASAITPV 257

Query: 243 PGGVGPMTVAMLLSNTLDSAKR 264
           PGGVGPMT AMLL NT++ AKR
Sbjct: 258 PGGVGPMTRAMLLVNTVELAKR 279

Length = 282

>gnl|CDD|172660 PRK14172, PRK14172, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  231 bits (590), Expect = 1e-75
 Identities = 98/262 (37%), Positives = 158/262 (60%), Gaps = 9/262 (3%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
           K++   +P +A ILVG    S  Y+ N+ K    +GI     +  +  +E++++N +   
Sbjct: 26  KENGLSIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEEL 85

Query: 62  NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPK 121
           N+D++++GI++QLPLP+HLDE KI + +   KD+D    +++G       E  F+PCTP 
Sbjct: 86  NKDNNVHGIMLQLPLPKHLDEKKITNKIDANKDIDCLTFISVGKFYKG--EKCFLPCTPN 143

Query: 122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEAD 181
             I L+    ++I GK  VVIGRSNIVG P + LL   +ATV+I H+ TKN +++  +AD
Sbjct: 144 SVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKNLKEVCKKAD 203

Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITP 241
           I++ A G    +   ++K GA+V+DVGT  V+        ++ GDV +++ +  AS ITP
Sbjct: 204 ILVVAIGRPKFIDEEYVKEGAIVIDVGTSSVNG-------KITGDVNFDKVIDKASYITP 256

Query: 242 VPGGVGPMTVAMLLSNTLDSAK 263
           VPGGVG +T  +L+ N  ++ K
Sbjct: 257 VPGGVGSLTTTLLIKNVCEALK 278

Length = 278

>gnl|CDD|184551 PRK14173, PRK14173, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  230 bits (588), Expect = 3e-75
 Identities = 117/260 (45%), Positives = 165/260 (63%), Gaps = 5/260 (1%)

Query: 8   VPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSI 67
           VP L V+ +GE   S +YVR K +  + +G++S V    +  +++E+L  ++  N D  +
Sbjct: 29  VPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEV 88

Query: 68  NGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELL 127
           +GILVQLPLP H+D  ++L+A+   KDVDGFHPLN+G L M G E L  PCTP G + LL
Sbjct: 89  DGILVQLPLPPHIDFQRVLEAIDPLKDVDGFHPLNVGRLWM-GGEALE-PCTPAGVVRLL 146

Query: 128 IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAA 187
              G+ + GK  VV+GRSNIVG P + LL R  ATV++ H+ T++   +T  AD+++ A 
Sbjct: 147 KHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQDLPAVTRRADVLVVAV 206

Query: 188 GVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVG 247
           G  +L+    ++PGAVV+DVG   V          L GDV  E A  +A  +TPVPGGVG
Sbjct: 207 GRPHLITPEMVRPGAVVVDVGINRV--GGNGGRDILTGDVHPEVA-EVAGALTPVPGGVG 263

Query: 248 PMTVAMLLSNTLDSAKRAYG 267
           PMTVAML++NT+ +A R  G
Sbjct: 264 PMTVAMLMANTVIAALRRRG 283

Length = 287

>gnl|CDD|172669 PRK14181, PRK14181, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  227 bits (580), Expect = 5e-74
 Identities = 118/262 (45%), Positives = 165/262 (62%), Gaps = 10/262 (3%)

Query: 9   PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 68
           PGLAV+L+G    S+ YV  K+K   ++G+ S         T  ++L  +   N D +I+
Sbjct: 27  PGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIH 86

Query: 69  GILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLI 128
           GILVQLPLP+HLD   IL A+S +KDVDG HP+N+G L + G    FIPCTP G IELL 
Sbjct: 87  GILVQLPLPKHLDAQAILQAISPDKDVDGLHPVNMGKLLL-GETDGFIPCTPAGIIELLK 145

Query: 129 RSGVEIMGKNAVVIGRSNIVGLP-TSLLLQRH---HATVSIVHALTKNPEQITSEADIVI 184
              + + G++  ++GRSNIVG P  +LL+Q+H   +ATV+++H+ ++N  +I   ADI+I
Sbjct: 146 YYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKTADIII 205

Query: 185 AAAGVANLVRGSWLKPGAVVLDVGT--CPVDDPSCEYGYRLMGDVCYEEAMRLASVITPV 242
           AA GV   ++   +   AV++DVGT   P  +P    GY L+GDV +   +     ITPV
Sbjct: 206 AAIGVPLFIKEEMIAEKAVIVDVGTSRVPAANPK---GYILVGDVDFNNVVPKCRAITPV 262

Query: 243 PGGVGPMTVAMLLSNTLDSAKR 264
           PGGVGPMTVAML+ NT +S  R
Sbjct: 263 PGGVGPMTVAMLMRNTWESYLR 284

Length = 287

>gnl|CDD|184550 PRK14169, PRK14169, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  223 bits (569), Expect = 2e-72
 Identities = 112/259 (43%), Positives = 162/259 (62%), Gaps = 8/259 (3%)

Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
              P LAV+LVG    S+ YVRNK +  E++G++S++    +  T+ ++L  ++  N D 
Sbjct: 28  DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDP 87

Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
            ++ ILVQLPLP  LDE  ++DA+  +KDVDGF P+++G L     EP  +  TP G + 
Sbjct: 88  DVDAILVQLPLPAGLDEQAVIDAIDPDKDVDGFSPVSVGRLWA--NEPTVVASTPYGIMA 145

Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA 185
           LL    +++ GK  V++GRSNIVG P + L+  H ATV+I H+ T+N +Q+T EADI++ 
Sbjct: 146 LLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLKQLTKEADILVV 205

Query: 186 AAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG 245
           A GV + +    +KPGAVV+DVG     D        L+GDV       +AS ITPVPGG
Sbjct: 206 AVGVPHFIGADAVKPGAVVIDVGISRGADGK------LLGDVDEAAVAPIASAITPVPGG 259

Query: 246 VGPMTVAMLLSNTLDSAKR 264
           VGPMT+A L++ T+  AKR
Sbjct: 260 VGPMTIASLMAQTVTLAKR 278

Length = 282

>gnl|CDD|184561 PRK14192, PRK14192, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  221 bits (565), Expect = 8e-72
 Identities = 107/267 (40%), Positives = 157/267 (58%), Gaps = 9/267 (3%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K   G+ P LA ILVG+   S TYVR K  AC  VG+ S+  E     T +++L  +  
Sbjct: 26  LKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEE 85

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N +  ++GIL+Q P+P  +DE    DA+SL KDVDG   L  G +AM   E  +   TP
Sbjct: 86  LNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATP 143

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
            G + LL    +E+ GK+AVV+GRS I+G P +++L   +ATV+I H+ T+N  ++  +A
Sbjct: 144 AGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELVKQA 203

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DI++ A G   L++  W+K GAVV+D G  P D           GD+  +    +AS  T
Sbjct: 204 DIIVGAVGKPELIKKDWIKQGAVVVDAGFHPRDGGGV-------GDIELQGIEEIASAYT 256

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRAYG 267
           PVPGGVGPMT+  L+  T+++A++A G
Sbjct: 257 PVPGGVGPMTINTLIRQTVEAAEKALG 283

Length = 283

>gnl|CDD|172659 PRK14171, PRK14171, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  220 bits (562), Expect = 3e-71
 Identities = 111/266 (41%), Positives = 164/266 (61%), Gaps = 7/266 (2%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K      P LA++LVG+   S  YV+NKIK   ++GI +++   +     +++++ ++ 
Sbjct: 25  LKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINE 84

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N D+ I+GI+VQLPLP  +D+ KIL AVS  KD+DGFHPLN+G L   G    FIPCT 
Sbjct: 85  LNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYL-HSGISQGFIPCTA 143

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
            GC+ ++ +    + GKN V+IGRSNIVG P S LL + + +V+I H+ T N   ITS+A
Sbjct: 144 LGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTHNLSSITSKA 203

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DIV+AA G    +   +  P ++V+DVG   +       G +++GDV +E        IT
Sbjct: 204 DIVVAAIGSPLKLTAEYFNPESIVIDVGINRIS------GNKIIGDVDFENVKSKVKYIT 257

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRAY 266
           PVPGG+GPMT+A LL NT+ + K + 
Sbjct: 258 PVPGGIGPMTIAFLLKNTVKAFKDSL 283

Length = 288

>gnl|CDD|172668 PRK14180, PRK14180, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  212 bits (542), Expect = 2e-68
 Identities = 113/262 (43%), Positives = 155/262 (59%), Gaps = 8/262 (3%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
           K      P L  I+VG    S+TYV +K KAC +VGI S V    +  TE E+L  +   
Sbjct: 25  KHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQL 84

Query: 62  NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPK 121
           N DSS++ ILVQLPLP H+++  ++ ++  EKDVDGFHP N+G L +R ++ L   CTPK
Sbjct: 85  NNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLE-SCTPK 143

Query: 122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEAD 181
           G + +L   G++  G  AVV+G SN+VG P S LL    ATV+  H  T + +  T++AD
Sbjct: 144 GIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKAD 203

Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITP 241
           I+I A G  N +    +K GAVV+DVG   VD        +++GDV +       + ITP
Sbjct: 204 ILIVAVGKPNFITADMVKEGAVVIDVGINHVDG-------KIVGDVDFAAVKDKVAAITP 256

Query: 242 VPGGVGPMTVAMLLSNTLDSAK 263
           VPGGVGPMT+  LL NT   A+
Sbjct: 257 VPGGVGPMTITELLYNTFQCAQ 278

Length = 282

>gnl|CDD|172665 PRK14177, PRK14177, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

 Score =  208 bits (530), Expect = 1e-66
 Identities = 109/260 (41%), Positives = 160/260 (61%), Gaps = 12/260 (4%)

Query: 7   KVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSS 66
           ++P LA ILVG    S+TYV  K+KAC +VG+ S +    +  T +E+L  +   N D +
Sbjct: 32  RIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPN 91

Query: 67  INGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIEL 126
           ++GIL+Q P+P  +DE    D ++LEKDVDG   L+ G L+M G E  ++PCTP G + L
Sbjct: 92  VDGILLQHPVPSQIDERAAFDRIALEKDVDGVTTLSFGKLSM-GVET-YLPCTPYGMVLL 149

Query: 127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAA 186
           L   G+++ GKNAVV+GRS I+G P ++LL   +ATV++ H+ T+N   I  +ADI++ A
Sbjct: 150 LKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQADIIVGA 209

Query: 187 AGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 246
            G    ++  W+  GAV+LD G  P +          +GD+   +A   +S  TPVPGGV
Sbjct: 210 VGKPEFIKADWISEGAVLLDAGYNPGN----------VGDIEISKAKDKSSFYTPVPGGV 259

Query: 247 GPMTVAMLLSNTLDSAKRAY 266
           GPMT+A+LL  TL S K  +
Sbjct: 260 GPMTIAVLLLQTLYSFKEHF 279

Length = 284

>gnl|CDD|201431 pfam00763, THF_DHG_CYH, Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain

 Score =  136 bits (345), Expect = 7e-41
 Identities = 51/94 (54%), Positives = 66/94 (70%)

Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
           K  G  P LAVILVG+   SQ YVR+K KA EE+GI+S +    +  TE+E+L  +   N
Sbjct: 24  KEKGITPKLAVILVGDDPASQVYVRSKRKAAEELGIESELIRLPEDITEEELLALIEKLN 83

Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVD 96
            D S++GILVQLPLP+H+DE KIL+A+  EKDVD
Sbjct: 84  ADPSVHGILVQLPLPKHIDENKILNAIDPEKDVD 117

Length = 117

>gnl|CDD|133451 cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

 Score =  104 bits (262), Expect = 2e-28
 Identities = 51/155 (32%), Positives = 72/155 (46%), Gaps = 22/155 (14%)

Query: 116 IPCTPKGC-------IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA 168
            PCTP           ELL + GV + GK  +V+GRS IVG P   LLQR  ATV     
Sbjct: 1   GPCTPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW 60

Query: 169 LTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVC 228
            T   +    +AD+V+  +     V   W+KPGA V++         S          + 
Sbjct: 61  KTIQLQSKVHDADVVVVGSPKPEKVPTEWIKPGATVINC--------SPTK-------LS 105

Query: 229 YEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK 263
            ++    AS+  P+ GGVG +TVAM + N + S +
Sbjct: 106 GDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSVR 140

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, mono-functional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express a monofunctional DH. M-THF DH, like other amino acid DH-like NAD(P)-binding domains, is a member of the Rossmann fold superfamily which includes glutamate, leucine, and phenylalanine DHs, m-THF DH, methylene-tetrahydromethanopterin DH, m-THF DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 140

>gnl|CDD|133447 cd01079, NAD_bind_m-THF_DH, NAD binding domain of methylene-tetrahydrofolate dehydrogenase

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 52/207 (25%), Positives = 75/207 (36%), Gaps = 56/207 (27%)

Query: 91  LEKDVDGFHPLNIGNLAMRGR----EPLF---IPCTPKGCIELL---------IRSGVEI 134
             KDV+G     I NL    R    E      +PCTP   +++L         +  G  +
Sbjct: 1   PHKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRL 60

Query: 135 MGKNAVVIGRSNIVGLPTSLLLQRHHATV-SI--------------------VHALTKNP 173
            GK   +I RS +VG P + LL    A V S+                    V       
Sbjct: 61  YGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMT 120

Query: 174 EQITSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEA 232
               S++D+VI      N  V    LK GA+ ++  +    +PS                
Sbjct: 121 LDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIKNFEPS---------------V 165

Query: 233 MRLASVITPVPGGVGPMTVAMLLSNTL 259
              AS+  P    +G +T+AMLL N L
Sbjct: 166 KEKASIYVPS---IGKVTIAMLLRNLL 189

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional DHs from S. cerevisiae and certain bacteria. M-THF DH, like other amino acid DH-like NAD(P)-binding domains, is a member of the Rossmann fold superfamily which includes glutamate, leucine, and phenylalanine DHs, m-THF DH, methylene-tetrahydromethanopterin DH, m-THF DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 197

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	100.0
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	100.0
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	100.0
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	100.0
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	100.0
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	100.0
KOG0089	309	consensus Methylenetetrahydrofolate dehydrogenase/	100.0
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	100.0
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	100.0
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	100.0
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	100.0
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	100.0
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	100.0
PRK12548	289	shikimate 5-dehydrogenase; Provisional	100.0
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	100.0
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	100.0
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	100.0
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	100.0
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	100.0
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	99.97
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	99.96
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	99.96
PF00763	117	THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cycloh	99.93
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.61
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.57
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	99.51
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	99.4
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	99.26
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	99.18
PRK13940	414	glutamyl-tRNA reductase; Provisional	99.16
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	99.16
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	99.1
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.06
PRK14982	340	acyl-ACP reductase; Provisional	98.99
PF08501	83	Shikimate_dh_N: Shikimate dehydrogenase substrate	98.95
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.91
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	98.88
PLN00203	519	glutamyl-tRNA reductase	98.78
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.71
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.66
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.6
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.51
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.5
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.5
COG5322	351	Predicted dehydrogenase [General function predicti	98.48
PLN02928	347	oxidoreductase family protein	98.45
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.38
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	98.34
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.34
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	98.33
PLN02494	477	adenosylhomocysteinase	98.32
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	98.28
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	98.28
PRK08291	330	ectoine utilization protein EutC; Validated	98.19
PRK13243	333	glyoxylate reductase; Reviewed	98.19
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.18
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.13
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.12
PRK07574	385	formate dehydrogenase; Provisional	98.06
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	98.02
PRK08618	325	ornithine cyclodeaminase; Validated	97.97
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	97.97
COG0281	432	SfcA Malic enzyme [Energy production and conversio	97.96
PRK06932	314	glycerate dehydrogenase; Provisional	97.94
PRK06436	303	glycerate dehydrogenase; Provisional	97.93
PRK06487	317	glycerate dehydrogenase; Provisional	97.9
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.9
PRK06141	314	ornithine cyclodeaminase; Validated	97.9
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	97.9
PLN03139	386	formate dehydrogenase; Provisional	97.89
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	97.87
PRK12862	763	malic enzyme; Reviewed	97.87
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	97.86
PRK08605	332	D-lactate dehydrogenase; Validated	97.86
PRK07340	304	ornithine cyclodeaminase; Validated	97.84
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	97.84
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.83
PRK12480	330	D-lactate dehydrogenase; Provisional	97.81
PLN02306	386	hydroxypyruvate reductase	97.77
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.76
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	97.75
PRK12861	764	malic enzyme; Reviewed	97.71
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.69
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	97.64
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	97.62
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	97.58
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.58
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.53
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	97.5
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.46
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.44
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.4
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.38
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	97.36
PRK06823	315	ornithine cyclodeaminase; Validated	97.36
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.35
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.31
PRK06407	301	ornithine cyclodeaminase; Provisional	97.31
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	97.28
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.24
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.23
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	97.21
PRK06046	326	alanine dehydrogenase; Validated	97.21
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	97.21
PRK14804	311	ornithine carbamoyltransferase; Provisional	97.15
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	97.14
PRK07589	346	ornithine cyclodeaminase; Validated	97.13
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	97.11
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	97.09
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.09
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.09
PLN02712	667	arogenate dehydrogenase	97.08
PRK13529	563	malate dehydrogenase; Provisional	97.06
PLN02256	304	arogenate dehydrogenase	97.06
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.05
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.03
PRK01713	334	ornithine carbamoyltransferase; Provisional	97.02
PRK04284	332	ornithine carbamoyltransferase; Provisional	97.01
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	97.0
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.97
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.96
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	96.95
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	96.95
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.92
PLN03129	581	NADP-dependent malic enzyme; Provisional	96.89
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.88
PRK02102	331	ornithine carbamoyltransferase; Validated	96.88
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.87
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.85
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	96.84
PLN02342	348	ornithine carbamoyltransferase	96.84
PRK13403	335	ketol-acid reductoisomerase; Provisional	96.83
PRK02255	338	putrescine carbamoyltransferase; Provisional	96.81
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	96.79
PLN02527	306	aspartate carbamoyltransferase	96.77
PRK06545	359	prephenate dehydrogenase; Validated	96.76
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.75
PRK07417	279	arogenate dehydrogenase; Reviewed	96.75
PRK14805	302	ornithine carbamoyltransferase; Provisional	96.72
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	96.68
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	96.68
PRK00779	304	ornithine carbamoyltransferase; Provisional	96.68
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.67
PRK08818	370	prephenate dehydrogenase; Provisional	96.67
PRK11891	429	aspartate carbamoyltransferase; Provisional	96.67
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.64
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.64
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.64
PRK08655	437	prephenate dehydrogenase; Provisional	96.61
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.6
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	96.59
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.57
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	96.57
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.54
PRK06199	379	ornithine cyclodeaminase; Validated	96.52
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	96.52
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	96.49
PRK15059	292	tartronate semialdehyde reductase; Provisional	96.48
PRK06398	258	aldose dehydrogenase; Validated	96.46
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.46
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	96.42
PRK08192	338	aspartate carbamoyltransferase; Provisional	96.42
PRK08223	287	hypothetical protein; Validated	96.38
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.38
PRK06949	258	short chain dehydrogenase; Provisional	96.36
PRK06523	260	short chain dehydrogenase; Provisional	96.35
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.35
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	96.34
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.32
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	96.32
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.31
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.3
PTZ00317	559	NADP-dependent malic enzyme; Provisional	96.29
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.25
PRK12367	245	short chain dehydrogenase; Provisional	96.23
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.21
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.21
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	96.19
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	96.16
PRK08507	275	prephenate dehydrogenase; Validated	96.16
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.15
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.15
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.15
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.15
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.13
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.13
PLN02586	360	probable cinnamyl alcohol dehydrogenase	96.12
PLN02688	266	pyrroline-5-carboxylate reductase	96.12
PRK09072	263	short chain dehydrogenase; Provisional	96.11
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.11
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	96.08
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.04
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	96.02
PRK12828	239	short chain dehydrogenase; Provisional	96.02
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.0
COG2910	211	Putative NADH-flavin reductase [General function p	96.0
PLN02712	667	arogenate dehydrogenase	96.0
PRK07523	255	gluconate 5-dehydrogenase; Provisional	95.99
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	95.98
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.94
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.94
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	95.93
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	95.93
PTZ00117	319	malate dehydrogenase; Provisional	95.92
PRK05866	293	short chain dehydrogenase; Provisional	95.9
PRK08862	227	short chain dehydrogenase; Provisional	95.89
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.89
CHL00194	317	ycf39 Ycf39; Provisional	95.89
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.87
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.86
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.85
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.84
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.83
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.82
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.81
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	95.8
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.79
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.79
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	95.78
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.78
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	95.78
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.78
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.76
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	95.75
PRK08085	254	gluconate 5-dehydrogenase; Provisional	95.75
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	95.74
PRK06172	253	short chain dehydrogenase; Provisional	95.74
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.74
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.73
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.72
PRK08628	258	short chain dehydrogenase; Provisional	95.72
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.71
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.69
PRK08339	263	short chain dehydrogenase; Provisional	95.69
PLN02477	410	glutamate dehydrogenase	95.68
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.67
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.67
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.67
PRK06138	252	short chain dehydrogenase; Provisional	95.66
PRK06841	255	short chain dehydrogenase; Provisional	95.65
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.64
PRK07062	265	short chain dehydrogenase; Provisional	95.63
PRK05717	255	oxidoreductase; Validated	95.61
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	95.61
PRK12829	264	short chain dehydrogenase; Provisional	95.61
PRK14031	444	glutamate dehydrogenase; Provisional	95.6
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	95.59
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	95.58
PRK07063	260	short chain dehydrogenase; Provisional	95.57
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	95.57
PRK05867	253	short chain dehydrogenase; Provisional	95.57
PRK06057	255	short chain dehydrogenase; Provisional	95.56
PRK07890	258	short chain dehydrogenase; Provisional	95.56
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.55
PRK08265	261	short chain dehydrogenase; Provisional	95.55
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.54
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	95.54
PRK10637	457	cysG siroheme synthase; Provisional	95.54
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	95.52
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	95.52
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.5
PRK06182	273	short chain dehydrogenase; Validated	95.49
PLN02858	1378	fructose-bisphosphate aldolase	95.48
PRK07097	265	gluconate 5-dehydrogenase; Provisional	95.48
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	95.46
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	95.44
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.43
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	95.43
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	95.43
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.42
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.42
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	95.42
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.42
PRK08703	239	short chain dehydrogenase; Provisional	95.4
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	95.39
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	95.38
PRK06179	270	short chain dehydrogenase; Provisional	95.37
PLN02427	386	UDP-apiose/xylose synthase	95.36
PRK09186	256	flagellin modification protein A; Provisional	95.35
PRK05854	313	short chain dehydrogenase; Provisional	95.35
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	95.34
PLN02896	353	cinnamyl-alcohol dehydrogenase	95.34
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.33
PRK07060	245	short chain dehydrogenase; Provisional	95.32
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	95.31
PRK08213	259	gluconate 5-dehydrogenase; Provisional	95.3
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.3
PRK07478	254	short chain dehydrogenase; Provisional	95.3
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	95.28
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	95.28
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	95.26
PRK07856	252	short chain dehydrogenase; Provisional	95.26
PLN02514	357	cinnamyl-alcohol dehydrogenase	95.26
PRK05872	296	short chain dehydrogenase; Provisional	95.25
PRK09242	257	tropinone reductase; Provisional	95.25
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	95.25
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	95.24
PRK07035	252	short chain dehydrogenase; Provisional	95.22
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	95.21
PRK07680	273	late competence protein ComER; Validated	95.2
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	95.2
PRK06196	315	oxidoreductase; Provisional	95.2
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	95.2
PRK08264	238	short chain dehydrogenase; Validated	95.19
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.18
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.17
PRK06125	259	short chain dehydrogenase; Provisional	95.15
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	95.15
PRK07411	390	hypothetical protein; Validated	95.14
PRK09291	257	short chain dehydrogenase; Provisional	95.13
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.12
PLN02695	370	GDP-D-mannose-3',5'-epimerase	95.11
PRK08936	261	glucose-1-dehydrogenase; Provisional	95.11
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.1
PRK05876	275	short chain dehydrogenase; Provisional	95.09
PRK07774	250	short chain dehydrogenase; Provisional	95.09
PRK07814	263	short chain dehydrogenase; Provisional	95.09
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	95.09
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.09
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.08
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	95.08
PRK06114	254	short chain dehydrogenase; Provisional	95.08
PRK06194	287	hypothetical protein; Provisional	95.08
PRK08589	272	short chain dehydrogenase; Validated	95.07
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	95.07
PRK08277	278	D-mannonate oxidoreductase; Provisional	95.06
PRK06500	249	short chain dehydrogenase; Provisional	95.06
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	95.06
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.06
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	95.06
PLN02178	375	cinnamyl-alcohol dehydrogenase	95.05
PRK07825	273	short chain dehydrogenase; Provisional	95.05
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	95.05
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	95.04
PRK12743	256	oxidoreductase; Provisional	95.04
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	95.03
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	95.03
PLN02778	298	3,5-epimerase/4-reductase	95.03
PLN02858	1378	fructose-bisphosphate aldolase	95.01
PRK07067	257	sorbitol dehydrogenase; Provisional	95.01
PLN02214	342	cinnamoyl-CoA reductase	95.01
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.0
PRK05225	487	ketol-acid reductoisomerase; Validated	94.95
PLN03209	576	translocon at the inner envelope of chloroplast su	94.94
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	94.93
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.92
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	94.92
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.89
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.89
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	94.88
PLN02383	344	aspartate semialdehyde dehydrogenase	94.88
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.87
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	94.86
PRK07576	264	short chain dehydrogenase; Provisional	94.85
PRK12742	237	oxidoreductase; Provisional	94.85
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	94.84
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	94.83
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	94.83
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	94.83
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.82
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	94.82
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	94.81
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.81
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	94.81
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.8
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.79
PRK06139	330	short chain dehydrogenase; Provisional	94.78
PRK06223	307	malate dehydrogenase; Reviewed	94.76
PRK12939	250	short chain dehydrogenase; Provisional	94.76
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	94.75
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	94.73
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.72
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	94.72
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	94.72
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.71
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.7
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	94.68
PRK06153	393	hypothetical protein; Provisional	94.65
PRK07326	237	short chain dehydrogenase; Provisional	94.65
PRK08226	263	short chain dehydrogenase; Provisional	94.65
PRK07806	248	short chain dehydrogenase; Provisional	94.65
PRK08278	273	short chain dehydrogenase; Provisional	94.64
PRK05875	276	short chain dehydrogenase; Provisional	94.62
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.61
PLN00106	323	malate dehydrogenase	94.59
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	94.58
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.57
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.55
PRK09414	445	glutamate dehydrogenase; Provisional	94.54
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	94.53
PRK06197	306	short chain dehydrogenase; Provisional	94.53
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	94.51
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	94.5
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	94.49
PRK06914	280	short chain dehydrogenase; Provisional	94.47
PRK06701	290	short chain dehydrogenase; Provisional	94.47
KOG0725	270	consensus Reductases with broad range of substrate	94.44
PLN02253	280	xanthoxin dehydrogenase	94.42
PRK05693	274	short chain dehydrogenase; Provisional	94.42
PLN02653	340	GDP-mannose 4,6-dehydratase	94.42
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.41
PRK12827	249	short chain dehydrogenase; Provisional	94.41
PRK08643	256	acetoin reductase; Validated	94.4
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	94.39
PRK12937	245	short chain dehydrogenase; Provisional	94.38
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	94.37
PRK05086	312	malate dehydrogenase; Provisional	94.37
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	94.36
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	94.35
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	94.34
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.34
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	94.34
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.32
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	94.31
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	94.28
PRK07985	294	oxidoreductase; Provisional	94.26
PRK07677	252	short chain dehydrogenase; Provisional	94.26
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	94.25
PRK07109	334	short chain dehydrogenase; Provisional	94.24
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	94.23
PRK05993	277	short chain dehydrogenase; Provisional	94.22
PLN02206	442	UDP-glucuronate decarboxylase	94.22
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.2
PRK12779	944	putative bifunctional glutamate synthase subunit b	94.2
PRK09135	249	pteridine reductase; Provisional	94.18
PRK14030	445	glutamate dehydrogenase; Provisional	94.18
PRK08303	305	short chain dehydrogenase; Provisional	94.18
PRK06198	260	short chain dehydrogenase; Provisional	94.17
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	94.17
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.15
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.14
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.12
PRK07577	234	short chain dehydrogenase; Provisional	94.11
PRK08267	260	short chain dehydrogenase; Provisional	94.1
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	94.09
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	94.09
PRK08328	231	hypothetical protein; Provisional	94.05
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	94.02
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	94.01
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	94.01
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	93.99
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	93.98
PRK06483	236	dihydromonapterin reductase; Provisional	93.96
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	93.95
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	93.93
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	93.93
PRK06128	300	oxidoreductase; Provisional	93.93
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	93.93
PRK06444	197	prephenate dehydrogenase; Provisional	93.91
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.9
PRK06180	277	short chain dehydrogenase; Provisional	93.89
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	93.86
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	93.85
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	93.85
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	93.85
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	93.84
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	93.82
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	93.81
PRK07831	262	short chain dehydrogenase; Provisional	93.81
PLN02583	297	cinnamoyl-CoA reductase	93.81
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	93.8
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	93.74
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	93.69
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	93.67
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	93.66
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.66
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	93.65
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	93.65
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	93.64
PRK11730	715	fadB multifunctional fatty acid oxidation complex	93.62
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	93.62

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=100.00  E-value=3.2e-80  Score=551.81  Aligned_cols=259  Identities=54%  Similarity=0.854  Sum_probs=250.3

Q ss_pred             CCCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCC
Q 024306            2 KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLD   81 (269)
Q Consensus         2 ~~~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~   81 (269)
                      +++.+.+|+|++|++|+||+|+.|+++|.++|+++|+.++.+.||++++++||++.|++||+|++||||+||+|||+|+|
T Consensus        24 ~~~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld  103 (283)
T COG0190          24 KAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLD  103 (283)
T ss_pred             HhccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCC
Confidence            34568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC
Q 024306           82 EGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA  161 (269)
Q Consensus        82 ~~~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga  161 (269)
                      +.+++++|+|+|||||||++|.|+|..+  ++.|+||||.|++++|++|+++++||+++|||||..||||++++|...+|
T Consensus       104 ~~~il~~I~p~KDVDG~hp~N~g~L~~~--~~~~~PCTp~gi~~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~na  181 (283)
T COG0190         104 EQKLLQAIDPEKDVDGFHPYNLGKLAQG--EPGFLPCTPAGIMTLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANA  181 (283)
T ss_pred             HHHHHhhcCcCCCccccChhHhcchhcC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCC
Confidence            9999999999999999999999999865  77899999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecc
Q 024306          162 TVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITP  241 (269)
Q Consensus       162 ~Vti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tp  241 (269)
                      +||+||++|+++.+++++|||||+|+|+|++++.+|+++|++|||+|+|+.++      ++++|||||+++.++++++||
T Consensus       182 TVtvcHs~T~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gavVIDVGinrv~~------~kl~GDVdf~~v~~~a~~iTP  255 (283)
T COG0190         182 TVTVCHSRTKDLASITKNADIVVVAVGKPHFIKADMVKPGAVVIDVGINRVND------GKLVGDVDFDSVKEKASAITP  255 (283)
T ss_pred             EEEEEcCCCCCHHHHhhhCCEEEEecCCccccccccccCCCEEEecCCccccC------CceEeeccHHHHHHhhcccCC
Confidence            99999999999999999999999999999999999999999999999999864      289999999999999999999


Q ss_pred             cCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          242 VPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       242 vpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                      |||||||||++|||+|+++++++..+.
T Consensus       256 VPGGVGPmTvamLl~Nt~~a~~~~~~~  282 (283)
T COG0190         256 VPGGVGPMTVAMLLENTLKAAERQRGE  282 (283)
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999987664

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=100.00  E-value=5.1e-80  Score=565.84  Aligned_cols=265  Identities=78%  Similarity=1.269  Sum_probs=251.5

Q ss_pred             CCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCH
Q 024306            3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (269)
Q Consensus         3 ~~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~   82 (269)
                      ++.|++|+|++|+||+||+|..|+++|.|+|+++||+++.+.||++++|+||++.|++||+|++||||+||+|||+|+++
T Consensus        81 ~~~g~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~  160 (345)
T PLN02897         81 KAVGKVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDE  160 (345)
T ss_pred             hccCCCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE
Q 024306           83 GKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT  162 (269)
Q Consensus        83 ~~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~  162 (269)
                      .+++++|+|+|||||+|+.|.|+|+.++..++|+||||.|++++|++|+++++||+|+|||||..||+|++++|.++||+
T Consensus       161 ~~i~~~I~p~KDVDGl~p~N~G~L~~~~~~~~~~PCTp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~AT  240 (345)
T PLN02897        161 SKILNMVRLEKDVDGFHPLNVGNLAMRGREPLFVSCTPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDAT  240 (345)
T ss_pred             HHHHhccCcccCccCCCHHHHHHHhcCCCCCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCE
Confidence            99999999999999999999999987544478999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceeccc
Q 024306          163 VSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPV  242 (269)
Q Consensus       163 Vti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpv  242 (269)
                      ||+||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+|+.+++.++.|++++|||||+++.++++++|||
T Consensus       241 VTicHs~T~nl~~~~~~ADIvIsAvGkp~~v~~d~vk~GavVIDVGin~~~~~~~~~g~klvGDVdfe~v~~~as~iTPV  320 (345)
T PLN02897        241 VSTVHAFTKDPEQITRKADIVIAAAGIPNLVRGSWLKPGAVVIDVGTTPVEDSSCEFGYRLVGDVCYEEALGVASAITPV  320 (345)
T ss_pred             EEEEcCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEccccccccccccCCCeeEecccHHHHHhhccccCCC
Confidence            99999999999999999999999999999999999999999999999996443333345899999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhC
Q 024306          243 PGGVGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       243 pgGvGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      ||||||||++|||+|+++++++|+.
T Consensus       321 PGGVGpmTvamLm~N~~~a~~~~~~  345 (345)
T PLN02897        321 PGGVGPMTITMLLCNTLDAAKRIFL  345 (345)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999863

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=100.00  E-value=8.7e-80  Score=566.33  Aligned_cols=266  Identities=71%  Similarity=1.145  Sum_probs=252.4

Q ss_pred             CCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCH
Q 024306            3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (269)
Q Consensus         3 ~~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~   82 (269)
                      ++.|++|+||+|+||+||+|..|+++|.|+|+++||+++.+.||++++|+|+++.|++||+|++||||+||+|||+|+++
T Consensus        98 ~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~  177 (364)
T PLN02616         98 ESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDE  177 (364)
T ss_pred             HcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCH
Confidence            44588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE
Q 024306           83 GKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT  162 (269)
Q Consensus        83 ~~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~  162 (269)
                      .+++++|+|+|||||+|+.|.|+|+.++..++|+||||.|++++|++|+++++||+|+|||+|..||+|++++|.++||+
T Consensus       178 ~~i~~aI~P~KDVDGl~p~N~G~L~~g~~~~~f~PCTp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~AT  257 (364)
T PLN02616        178 QNILNAVSIEKDVDGFHPLNIGRLAMRGREPLFVPCTPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDAT  257 (364)
T ss_pred             HHHHhccCcccCcccCChhhhHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCe
Confidence            99999999999999999999999997644578999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceeccc
Q 024306          163 VSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPV  242 (269)
Q Consensus       163 Vti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpv  242 (269)
                      ||+||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+|+.+++.++.|++++|||||+++.++++++|||
T Consensus       258 VTicHs~T~nl~~~~r~ADIVIsAvGkp~~i~~d~vK~GAvVIDVGIn~~~~~~~~~g~klvGDVdfe~v~~~as~ITPV  337 (364)
T PLN02616        258 VSIVHSRTKNPEEITREADIIISAVGQPNMVRGSWIKPGAVVIDVGINPVEDASSPRGYRLVGDVCYEEACKVASAVTPV  337 (364)
T ss_pred             EEEeCCCCCCHHHHHhhCCEEEEcCCCcCcCCHHHcCCCCEEEeccccccccccccCCCeEEecCcHHHHHhhccccCCC
Confidence            99999999999999999999999999999999999999999999999996443222344899999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          243 PGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       243 pgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                      ||||||||++|||+|++++++++.++
T Consensus       338 PGGVGpmTva~Ll~N~~~aa~~~~~~  363 (364)
T PLN02616        338 PGGVGPMTIAMLLSNTLTSAKRIHNF  363 (364)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999998765

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=4.1e-79  Score=550.77  Aligned_cols=256  Identities=42%  Similarity=0.738  Sum_probs=245.9

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHH
Q 024306            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (269)
Q Consensus         4 ~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~   83 (269)
                      +.|++|+||+|++|+||+|..|+++|.|+|+++||+++.+.||+++++++|++.|++||+|++||||+||+|||+|+++.
T Consensus        28 ~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~  107 (288)
T PRK14171         28 QTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKN  107 (288)
T ss_pred             ccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHH
Confidence            34889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024306           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (269)
Q Consensus        84 ~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~V  163 (269)
                      +++++|+|+|||||+|+.|.|+++.|. ..+|+||||.|++++|++|+++++||+|+|||||..||+|++++|.++||+|
T Consensus       108 ~i~~~I~p~KDVDGl~~~N~g~l~~g~-~~~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATV  186 (288)
T PRK14171        108 KILSAVSPSKDIDGFHPLNVGYLHSGI-SQGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSV  186 (288)
T ss_pred             HHHhccCcccccccCCccchhhhhcCC-CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEE
Confidence            999999999999999999999999763 4689999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccC
Q 024306          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP  243 (269)
Q Consensus       164 ti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp  243 (269)
                      |+||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+|+..+      ++++|||||+++.++++++||||
T Consensus       187 tichs~T~~L~~~~~~ADIvV~AvGkp~~i~~~~vk~GavVIDvGin~~~~------gkl~GDVd~~~v~~~a~~iTPVP  260 (288)
T PRK14171        187 TICHSKTHNLSSITSKADIVVAAIGSPLKLTAEYFNPESIVIDVGINRISG------NKIIGDVDFENVKSKVKYITPVP  260 (288)
T ss_pred             EEeCCCCCCHHHHHhhCCEEEEccCCCCccCHHHcCCCCEEEEeeccccCC------CCeECCccHHHHHhhceEeCCCC
Confidence            999999999999999999999999999999999999999999999998632      28999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHHHHHh
Q 024306          244 GGVGPMTVAMLLSNTLDSAKRAY  266 (269)
Q Consensus       244 gGvGp~T~~mLl~n~v~a~~~~~  266 (269)
                      |||||||++|||+|+++++++.+
T Consensus       261 GGVGp~T~a~L~~N~v~a~~~~~  283 (288)
T PRK14171        261 GGIGPMTIAFLLKNTVKAFKDSL  283 (288)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999998543

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=8.1e-79  Score=551.46  Aligned_cols=266  Identities=50%  Similarity=0.816  Sum_probs=250.3

Q ss_pred             CCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCH
Q 024306            3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (269)
Q Consensus         3 ~~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~   82 (269)
                      ++.|++|+|++|++|+||+|.+|++.|.++|+++||+++.+.||++++++|+++.|++||+|++||||+||+|||+|+++
T Consensus        28 ~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~  107 (297)
T PRK14168         28 EKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINE  107 (297)
T ss_pred             HcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCH
Confidence            34488999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC---
Q 024306           83 GKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH---  159 (269)
Q Consensus        83 ~~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~---  159 (269)
                      .+++++|+|+|||||+|+.|.|+++.|.....|+||||.|++++|++|+++++||+|+|||||..||+|++++|.++   
T Consensus       108 ~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~  187 (297)
T PRK14168        108 KKVLNAIDPDKDVDGFHPVNVGRLMIGGDEVKFLPCTPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPG  187 (297)
T ss_pred             HHHHhccCccccccccChhhHHHHhcCCCCCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccC
Confidence            99999999999999999999999998754468999999999999999999999999999999999999999999998   


Q ss_pred             -CCEEEEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcce
Q 024306          160 -HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASV  238 (269)
Q Consensus       160 -ga~Vti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~  238 (269)
                       +|+||+||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+|+..+..+.++++++|||||+++.+++++
T Consensus       188 ~~atVtv~hs~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gavVIDvGin~~~~~~~~g~~~~~GDVdfe~v~~~a~~  267 (297)
T PRK14168        188 ANATVTIVHTRSKNLARHCQRADILIVAAGVPNLVKPEWIKPGATVIDVGVNRVGTNESTGKAILSGDVDFDAVKEIAGK  267 (297)
T ss_pred             CCCEEEEecCCCcCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEecCCCccCccccCCCcceeccccHHHHHhhccE
Confidence             7999999999999999999999999999999999999999999999999998532111011249999999999999999


Q ss_pred             ecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          239 ITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       239 ~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                      +|||||||||+|++|||+|+++++++|+++
T Consensus       268 iTPVPGGVGp~T~a~L~~N~~~a~~~~~~~  297 (297)
T PRK14168        268 ITPVPGGVGPMTIAMLMRNTLKSAKFHLSL  297 (297)
T ss_pred             ecCCCCCchHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999985

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=100.00  E-value=1e-78  Score=550.76  Aligned_cols=265  Identities=63%  Similarity=1.052  Sum_probs=250.5

Q ss_pred             CCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCH
Q 024306            3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (269)
Q Consensus         3 ~~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~   82 (269)
                      ++.|++|+|++|++|+||+|..|++.|.|+|+++||+++.+.||++++++|+++.|++||+|++||||+||+|||+|+++
T Consensus        34 ~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~  113 (299)
T PLN02516         34 EKHGKVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINE  113 (299)
T ss_pred             HcCCCCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCH
Confidence            34488999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE
Q 024306           83 GKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT  162 (269)
Q Consensus        83 ~~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~  162 (269)
                      .+++++|+|+|||||+|+.|.|+++.++...+|+||||.|++++|++|+++++||+|+|||||..||||++++|.++||+
T Consensus       114 ~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~AT  193 (299)
T PLN02516        114 EKILNEISLEKDVDGFHPLNIGKLAMKGREPLFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADAT  193 (299)
T ss_pred             HHHHhccCcccccCccCHhhHhhHhcCCCCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE
Confidence            99999999999999999999999987643578999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceeccc
Q 024306          163 VSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPV  242 (269)
Q Consensus       163 Vti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpv  242 (269)
                      ||+||++|+++++++++|||||+|+|+|++++++|+++|++|||+|+++..++....|.+++|||||+++.++++++|||
T Consensus       194 Vtvchs~T~nl~~~~~~ADIvv~AvGk~~~i~~~~vk~gavVIDvGin~~~~~~~~~g~kl~GDvd~e~v~~~a~~iTPV  273 (299)
T PLN02516        194 VTVVHSRTPDPESIVREADIVIAAAGQAMMIKGDWIKPGAAVIDVGTNAVSDPSKKSGYRLVGDVDFAEVSKVAGWITPV  273 (299)
T ss_pred             EEEeCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEeeccccCcccccCCCceEcCcChHHhhhhceEecCC
Confidence            99999999999999999999999999999999999999999999999986442221233899999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhC
Q 024306          243 PGGVGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       243 pgGvGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      ||||||||++|||+|+++++++|+.
T Consensus       274 PGGVGp~T~a~L~~N~v~a~~~~~~  298 (299)
T PLN02516        274 PGGVGPMTVAMLLKNTVDGAKRVFA  298 (299)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999974

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=9.2e-79  Score=547.51  Aligned_cols=254  Identities=52%  Similarity=0.902  Sum_probs=246.2

Q ss_pred             CCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHH
Q 024306            6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKI   85 (269)
Q Consensus         6 ~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i   85 (269)
                      |++|+|++|++|+||+|..|+++|.|+|+++||+++.+.||++++++|+++.|++||+|++||||+||+|||+|+++.++
T Consensus        29 g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i  108 (284)
T PRK14170         29 GKKPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKV  108 (284)
T ss_pred             CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEE
Q 024306           86 LDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI  165 (269)
Q Consensus        86 ~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti  165 (269)
                      +++|+|+|||||+|+.|.|+++.|  .++|+||||.|++++|++|+++++||+|+|||+|..||+|++++|.++||+||+
T Consensus       109 ~~~I~p~KDVDGl~p~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVti  186 (284)
T PRK14170        109 IDTISYDKDVDGFHPVNVGNLFIG--KDSFVPCTPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTI  186 (284)
T ss_pred             HhccCcccCcccCChhhhhHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEE
Confidence            999999999999999999999976  467999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCc
Q 024306          166 VHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG  245 (269)
Q Consensus       166 ~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgG  245 (269)
                      ||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+++..+      ++++|||||+++.++++++||||||
T Consensus       187 chs~T~~l~~~~~~ADIvI~AvG~~~~i~~~~vk~GavVIDvGin~~~~------gkl~GDvdfe~~~~~a~~iTPVPGG  260 (284)
T PRK14170        187 AHSRTKDLPQVAKEADILVVATGLAKFVKKDYIKPGAIVIDVGMDRDEN------NKLCGDVDFDDVVEEAGFITPVPGG  260 (284)
T ss_pred             eCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEccCcccCC------CCeecccchHHHHhhccEecCCCCC
Confidence            9999999999999999999999999999999999999999999998533      2899999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhC
Q 024306          246 VGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       246 vGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      |||+|++|||+|+++++++++-
T Consensus       261 VGpvT~a~L~~N~~~a~~~~~~  282 (284)
T PRK14170        261 VGPMTITMLLANTLKAAKRIWK  282 (284)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999998764

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.3e-78  Score=548.57  Aligned_cols=261  Identities=48%  Similarity=0.794  Sum_probs=247.1

Q ss_pred             CCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCH
Q 024306            3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (269)
Q Consensus         3 ~~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~   82 (269)
                      ++.|++|+|++|++|+||+|.+|+++|.++|+++||+++.+.||++++++|+++.|++||+|++||||+||+|||+|+++
T Consensus        26 ~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~  105 (293)
T PRK14185         26 AKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISE  105 (293)
T ss_pred             hccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC---
Q 024306           83 GKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH---  159 (269)
Q Consensus        83 ~~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~---  159 (269)
                      .+++++|+|+|||||+|+.|.|+|+.|  .++|+||||.|++++|++|+++++||+|+|||||..||+|++.+|.++   
T Consensus       106 ~~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~  183 (293)
T PRK14185        106 QKVIEAIDYRKDVDGFHPINVGRMSIG--LPCFVSATPNGILELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYP  183 (293)
T ss_pred             HHHHhccCcccCcCCCCHhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCC
Confidence            999999999999999999999999976  578999999999999999999999999999999999999999999998   


Q ss_pred             -CCEEEEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcce
Q 024306          160 -HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASV  238 (269)
Q Consensus       160 -ga~Vti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~  238 (269)
                       +|+||+||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+|+..++.+++|.+++|||||+++.+++++
T Consensus       184 ~~aTVtvchs~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin~~~~~~~~~g~klvGDVdf~~v~~~a~~  263 (293)
T PRK14185        184 GDCTVTVCHSRSKNLKKECLEADIIIAALGQPEFVKADMVKEGAVVIDVGTTRVPDATRKSGFKLTGDVKFDEVAPKCSY  263 (293)
T ss_pred             CCCEEEEecCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecCcccccccccCCCeeEcCCCHHHHHhhccE
Confidence             7999999999999999999999999999999999999999999999999998643222223489999999999999999


Q ss_pred             ecccCCcccHHHHHHHHHHHHHHHHHH
Q 024306          239 ITPVPGGVGPMTVAMLLSNTLDSAKRA  265 (269)
Q Consensus       239 ~tpvpgGvGp~T~~mLl~n~v~a~~~~  265 (269)
                      +|||||||||||++|||+|+++++++.
T Consensus       264 iTPVPGGVGp~T~a~L~~N~~~a~~~~  290 (293)
T PRK14185        264 ITPVPGGVGPMTIVSLMKNTLLAGKKA  290 (293)
T ss_pred             eCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998754

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2e-78  Score=547.75  Aligned_cols=261  Identities=44%  Similarity=0.728  Sum_probs=247.8

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHH
Q 024306            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (269)
Q Consensus         4 ~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~   83 (269)
                      +.|++|+|++|++|+||+|++|+++|.|+|+++||+++.+.||++++++++++.|++||+|++||||+||+|||+|+++.
T Consensus        28 ~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~  107 (294)
T PRK14187         28 QHNLFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHIDKN  107 (294)
T ss_pred             ccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHH
Confidence            34889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024306           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (269)
Q Consensus        84 ~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~V  163 (269)
                      +++++|+|+|||||+|+.|.|+|+.|+..+.|+||||.|++++|++|+++++||+|+|||+|..||+|++++|.++||+|
T Consensus       108 ~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTV  187 (294)
T PRK14187        108 LIINTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTV  187 (294)
T ss_pred             HHHhccCcccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEE
Confidence            99999999999999999999999987544689999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccC
Q 024306          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP  243 (269)
Q Consensus       164 ti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp  243 (269)
                      |+||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+|+..+. +  .++++|||||+++.++++++||||
T Consensus       188 t~chs~T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gaiVIDVGin~~~~~-~--~~kl~GDvd~e~v~~~a~~iTPVP  264 (294)
T PRK14187        188 TTVHSATRDLADYCSKADILVAAVGIPNFVKYSWIKKGAIVIDVGINSIEEG-G--VKKFVGDVDFAEVKKKASAITPVP  264 (294)
T ss_pred             EEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccCCC-C--ccceeCCccHHHHhhhccEecCCC
Confidence            9999999999999999999999999999999999999999999999986331 0  127999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhC
Q 024306          244 GGVGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       244 gGvGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      |||||||++|||+|+++++++..+
T Consensus       265 GGVGp~T~a~L~~N~~~a~~~~~~  288 (294)
T PRK14187        265 GGVGPMTIAFLMVNTVIAACNQKG  288 (294)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999987643

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.5e-78  Score=544.72  Aligned_cols=254  Identities=49%  Similarity=0.791  Sum_probs=245.0

Q ss_pred             CCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHH
Q 024306            6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKI   85 (269)
Q Consensus         6 ~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i   85 (269)
                      |++|+|++|++|+||+|.+|+++|.|+|+++||+++.+.||++++++||++.|++||+|++||||+||+|||+|+++.++
T Consensus        28 g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i  107 (282)
T PRK14166         28 GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLI  107 (282)
T ss_pred             CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEE
Q 024306           86 LDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI  165 (269)
Q Consensus        86 ~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti  165 (269)
                      +++|+|+|||||+|+.|.|+|+.|. .++|+||||.|++++|++|+++++||+|+|||||..||||++++|.++||+||+
T Consensus       108 ~~~I~p~KDVDGl~~~N~g~l~~g~-~~~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~  186 (282)
T PRK14166        108 LESIISSKDVDGFHPINVGYLNLGL-ESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSV  186 (282)
T ss_pred             HhccCcccCcccCChhhhHHHhcCC-CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEE
Confidence            9999999999999999999999763 468999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCc
Q 024306          166 VHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG  245 (269)
Q Consensus       166 ~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgG  245 (269)
                      ||++|+++++++++|||||+|+|+|++++++|+++|++|||+|+|+..+      ++++|||||+++.++++++||||||
T Consensus       187 chs~T~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDvGin~~~~------gkl~GDVd~~~v~~~a~~iTPVPGG  260 (282)
T PRK14166        187 CHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLES------GKIVGDVDFEEVSKKSSYITPVPGG  260 (282)
T ss_pred             eCCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEEEecccccCC------CCeeCCCCHHHHHhhccEecCCCCC
Confidence            9999999999999999999999999999999999999999999998532      1899999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHh
Q 024306          246 VGPMTVAMLLSNTLDSAKRAY  266 (269)
Q Consensus       246 vGp~T~~mLl~n~v~a~~~~~  266 (269)
                      |||+|++|||+|+++++++..
T Consensus       261 VGp~T~a~L~~N~v~a~~~~~  281 (282)
T PRK14166        261 VGPMTIAMLLENTVKSAKNRL  281 (282)
T ss_pred             chHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999998654

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=2.5e-78  Score=544.70  Aligned_cols=253  Identities=44%  Similarity=0.737  Sum_probs=245.2

Q ss_pred             CCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHH
Q 024306            6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKI   85 (269)
Q Consensus         6 ~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i   85 (269)
                      |++|+|++|++|+||+|..|+++|.|+|+++||+++.+.||++++++||++.|++||+|++||||+||+|||+|+++.++
T Consensus        28 g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i  107 (282)
T PRK14169         28 DVTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAV  107 (282)
T ss_pred             CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEE
Q 024306           86 LDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI  165 (269)
Q Consensus        86 ~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti  165 (269)
                      +++|+|+|||||+|+.|.|+++.+  ..+|+||||.|++++|++|+++++||+|+|||||..||+|++++|.++||+||+
T Consensus       108 ~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVti  185 (282)
T PRK14169        108 IDAIDPDKDVDGFSPVSVGRLWAN--EPTVVASTPYGIMALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTI  185 (282)
T ss_pred             HhhcCcccCcccCChhhhHHHhcC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEE
Confidence            999999999999999999999976  578999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCc
Q 024306          166 VHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG  245 (269)
Q Consensus       166 ~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgG  245 (269)
                      ||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+|+..+      ++++|||||+++.++++++||||||
T Consensus       186 chs~T~~l~~~~~~ADIvI~AvG~p~~i~~~~vk~GavVIDvGin~~~~------gkl~GDVd~~~v~~~a~~iTPVPGG  259 (282)
T PRK14169        186 AHSKTRNLKQLTKEADILVVAVGVPHFIGADAVKPGAVVIDVGISRGAD------GKLLGDVDEAAVAPIASAITPVPGG  259 (282)
T ss_pred             ECCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCcEEEEeeccccCC------CCeeecCcHHHHHhhccEecCCCCC
Confidence            9999999999999999999999999999999999999999999998533      1899999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHh
Q 024306          246 VGPMTVAMLLSNTLDSAKRAY  266 (269)
Q Consensus       246 vGp~T~~mLl~n~v~a~~~~~  266 (269)
                      |||||++|||+|+++++++..
T Consensus       260 VGp~T~a~L~~N~~~a~~~~~  280 (282)
T PRK14169        260 VGPMTIASLMAQTVTLAKRRA  280 (282)
T ss_pred             cHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998754

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=3.1e-78  Score=543.65  Aligned_cols=254  Identities=49%  Similarity=0.780  Sum_probs=245.4

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHH
Q 024306            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (269)
Q Consensus         5 ~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~   84 (269)
                      .|++|+||+|++|+||+|..|+++|.++|+++||+++.+.||++++++++++.|++||+|++||||+||+|||+|+++.+
T Consensus        27 ~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~  106 (282)
T PRK14182         27 RGVQTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHVDERA  106 (282)
T ss_pred             CCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCccccccccccceecccccCCCCCc-cccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024306           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPL-FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (269)
Q Consensus        85 i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~-~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~V  163 (269)
                      ++++|+|+|||||+|+.|.|+++.|  ..+ |+||||.|++++|++|+++++||+|+|||+|..||+|++++|.++||+|
T Consensus       107 i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~~PcTp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtV  184 (282)
T PRK14182        107 VLDAISPAKDADGFHPFNVGALSIG--IAGVPRPCTPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATV  184 (282)
T ss_pred             HHhccCcccCcCCCCHhHHHHHhCC--CCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEE
Confidence            9999999999999999999999976  344 8999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccC
Q 024306          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP  243 (269)
Q Consensus       164 ti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp  243 (269)
                      |+||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+++..+      ++++|||||+++.++++++||||
T Consensus       185 tichs~T~nl~~~~~~ADIvI~AvGk~~~i~~~~ik~gaiVIDvGin~~~~------gkl~GDVd~~~v~~~a~~iTPVP  258 (282)
T PRK14182        185 TIAHSRTADLAGEVGRADILVAAIGKAELVKGAWVKEGAVVIDVGMNRLAD------GKLVGDVEFAAAAARASAITPVP  258 (282)
T ss_pred             EEeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEeeceecCC------CCeeCCCCHHHHHhhccEecCCC
Confidence            999999999999999999999999999999999999999999999998633      18999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHHHHHh
Q 024306          244 GGVGPMTVAMLLSNTLDSAKRAY  266 (269)
Q Consensus       244 gGvGp~T~~mLl~n~v~a~~~~~  266 (269)
                      |||||||++|||+|+++++++|.
T Consensus       259 GGVGp~T~a~L~~N~~~~~~~~~  281 (282)
T PRK14182        259 GGVGPMTRAMLLVNTVELAKRTA  281 (282)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999885

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=4.7e-78  Score=542.92  Aligned_cols=255  Identities=44%  Similarity=0.714  Sum_probs=245.9

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHH
Q 024306            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (269)
Q Consensus         4 ~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~   83 (269)
                      +.|++|+|++|++|+||+|..|+++|.|+|+++||+++.+.||++++++|+++.|++||+|++||||+||+|||+|+++.
T Consensus        27 ~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~  106 (282)
T PRK14180         27 HTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKN  106 (282)
T ss_pred             ccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024306           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (269)
Q Consensus        84 ~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~V  163 (269)
                      +++++|+|+|||||+|+.|.|+++.|. ..+|+||||.|++++|++|+++++||+|+|||+|..||+|++++|.++||+|
T Consensus       107 ~i~~~I~p~KDVDGl~~~n~g~l~~g~-~~~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATV  185 (282)
T PRK14180        107 NVIYSIKPEKDVDGFHPTNVGRLQLRD-KKCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATV  185 (282)
T ss_pred             HHHhhcCccccccccChhhHHHHhcCC-CCCcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEE
Confidence            999999999999999999999999763 3679999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccC
Q 024306          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP  243 (269)
Q Consensus       164 ti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp  243 (269)
                      |+||++|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+|+.++       +++|||||+++.++++++||||
T Consensus       186 t~chs~T~dl~~~~k~ADIvIsAvGkp~~i~~~~vk~gavVIDvGin~~~g-------kl~GDvd~~~v~~~a~~iTPVP  258 (282)
T PRK14180        186 TTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG-------KIVGDVDFAAVKDKVAAITPVP  258 (282)
T ss_pred             EEEcCCCCCHHHHhhhcCEEEEccCCcCcCCHHHcCCCcEEEEecccccCC-------ceeCCcCHHHHHhhccEeccCC
Confidence            999999999999999999999999999999999999999999999998533       8999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHHHHHh
Q 024306          244 GGVGPMTVAMLLSNTLDSAKRAY  266 (269)
Q Consensus       244 gGvGp~T~~mLl~n~v~a~~~~~  266 (269)
                      |||||+|++|||+|+++++++++
T Consensus       259 GGVGp~T~a~L~~Nl~~a~~~~~  281 (282)
T PRK14180        259 GGVGPMTITELLYNTFQCAQELN  281 (282)
T ss_pred             CChhHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999998765

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=5e-78  Score=543.45  Aligned_cols=259  Identities=44%  Similarity=0.731  Sum_probs=246.0

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHH
Q 024306            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (269)
Q Consensus         5 ~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~   84 (269)
                      .+++|+|++|++|+||+|+.|+++|.++|+++||+++.+.||++++++|+++.|++||+|++||||+||+|||+|+++.+
T Consensus        23 l~~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~  102 (287)
T PRK14181         23 SSTAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQA  102 (287)
T ss_pred             hCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC----C
Q 024306           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----H  160 (269)
Q Consensus        85 i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~----g  160 (269)
                      ++++|+|+|||||+|+.|.|+|+.|+ .+.|+||||.|++++|++|+++++||+|+|||||..||||++++|.++    +
T Consensus       103 i~~~I~p~KDVDGl~p~n~g~l~~g~-~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~  181 (287)
T PRK14181        103 ILQAISPDKDVDGLHPVNMGKLLLGE-TDGFIPCTPAGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTN  181 (287)
T ss_pred             HHhccCcccCcccCChhhHHHHhcCC-CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCC
Confidence            99999999999999999999999773 457999999999999999999999999999999999999999999999    8


Q ss_pred             CEEEEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceec
Q 024306          161 ATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT  240 (269)
Q Consensus       161 a~Vti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~t  240 (269)
                      |+||+||++|+++++++++|||||+|+|+|++++++|+++|++|||+|+|+..++++ .|++++|||||+++.++++++|
T Consensus       182 AtVtvchs~T~~l~~~~~~ADIvV~AvG~p~~i~~~~ik~GavVIDvGin~~~~~~~-~g~kl~GDVd~e~~~~~a~~iT  260 (287)
T PRK14181        182 ATVTLLHSQSENLTEILKTADIIIAAIGVPLFIKEEMIAEKAVIVDVGTSRVPAANP-KGYILVGDVDFNNVVPKCRAIT  260 (287)
T ss_pred             CEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEecccccccccC-CCCeeEeccchHHHHhhccccc
Confidence            999999999999999999999999999999999999999999999999998533221 1237999999999999999999


Q ss_pred             ccCCcccHHHHHHHHHHHHHHHHHH
Q 024306          241 PVPGGVGPMTVAMLLSNTLDSAKRA  265 (269)
Q Consensus       241 pvpgGvGp~T~~mLl~n~v~a~~~~  265 (269)
                      ||||||||||++|||+|++++++++
T Consensus       261 PVPGGVGp~T~a~L~~N~~~a~~~~  285 (287)
T PRK14181        261 PVPGGVGPMTVAMLMRNTWESYLRH  285 (287)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999865

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=7.2e-78  Score=545.25  Aligned_cols=261  Identities=47%  Similarity=0.772  Sum_probs=248.1

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHH
Q 024306            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (269)
Q Consensus         5 ~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~   84 (269)
                      .|++|+||+|++|+||+|.+|+++|.++|+++||+++.+.||++++++|+++.|++||+|++||||+||+|||+|+++.+
T Consensus        28 ~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~  107 (297)
T PRK14167         28 AGVTPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDRE  107 (297)
T ss_pred             CCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC----C
Q 024306           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----H  160 (269)
Q Consensus        85 i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~----g  160 (269)
                      ++++|+|+|||||+|+.|.|+++.|  ...|+||||.|++++|++|+++++||+|+|||||..||||++++|.++    +
T Consensus       108 i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~  185 (297)
T PRK14167        108 VLRRIDPAKDVDGFHPENVGRLVAG--DARFKPCTPHGIQKLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGN  185 (297)
T ss_pred             HHhccCcccCcccCChhhhHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCC
Confidence            9999999999999999999999976  468999999999999999999999999999999999999999999988    8


Q ss_pred             CEEEEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceec
Q 024306          161 ATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT  240 (269)
Q Consensus       161 a~Vti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~t  240 (269)
                      |+||+||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+|+..+. +.+|++++|||||+++.++++++|
T Consensus       186 aTVtvchs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gaiVIDvGin~~~~~-~~~g~kl~GDVd~e~v~~~a~~iT  264 (297)
T PRK14167        186 ATVTVCHSRTDDLAAKTRRADIVVAAAGVPELIDGSMLSEGATVIDVGINRVDAD-TEKGYELVGDVEFESAKEKASAIT  264 (297)
T ss_pred             CEEEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEccccccCcc-cccCCceeecCcHHHHHhhceEec
Confidence            9999999999999999999999999999999999999999999999999996321 112347999999999999999999


Q ss_pred             ccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          241 PVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       241 pvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                      ||||||||||++|||+|+++++++..+.
T Consensus       265 PVPGGVGpvT~a~L~~N~~~a~~~~~~~  292 (297)
T PRK14167        265 PVPGGVGPMTRAMLLYNTVKAASLQEGV  292 (297)
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999987664

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=4.7e-78  Score=543.92  Aligned_cols=256  Identities=49%  Similarity=0.769  Sum_probs=247.4

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHH
Q 024306            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (269)
Q Consensus         4 ~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~   83 (269)
                      +.|++|+|++|++|+||+|.+|+++|.|+|+++||+++.+.||++++++||++.|++||+|++||||+||+|||+|+++.
T Consensus        27 ~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~  106 (286)
T PRK14184         27 RHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQ  106 (286)
T ss_pred             ccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHH
Confidence            44789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh----C
Q 024306           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----H  159 (269)
Q Consensus        84 ~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~----~  159 (269)
                      +++++|+|+|||||+|+.|.|+|+.|  .+.|+||||.|++++|++|+++++||+|+|||||..||+|++++|.+    +
T Consensus       107 ~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~  184 (286)
T PRK14184        107 RCLELIDPAKDVDGFHPENMGRLALG--LPGFRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFA  184 (286)
T ss_pred             HHHhccCcccCcccCCHhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccC
Confidence            99999999999999999999999976  56799999999999999999999999999999999999999999999    8


Q ss_pred             CCEEEEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHccee
Q 024306          160 HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVI  239 (269)
Q Consensus       160 ga~Vti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~  239 (269)
                      ||+|++||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+++.++       +++|||||+++.++++++
T Consensus       185 ~AtVt~~hs~t~~l~~~~~~ADIVI~AvG~p~li~~~~vk~GavVIDVGi~~~~~-------~l~GDVdf~~v~~~a~~i  257 (286)
T PRK14184        185 NATVTVCHSRTPDLAEECREADFLFVAIGRPRFVTADMVKPGAVVVDVGINRTDD-------GLVGDCDFEGLSDVASAI  257 (286)
T ss_pred             CCEEEEEeCCchhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEeeeeccCC-------CccCCccHHHHHhhceEe
Confidence            9999999999999999999999999999999999999999999999999999643       699999999999999999


Q ss_pred             cccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          240 TPVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       240 tpvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                      |||||||||||++|||+|+++++++..|+
T Consensus       258 TPVPGGVGp~Tva~Ll~N~~~a~~~~~~~  286 (286)
T PRK14184        258 TPVPGGVGPMTIAQLLVNTVQSWKERVGL  286 (286)
T ss_pred             cCCCCCChHHHHHHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999987764

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=7e-78  Score=542.77  Aligned_cols=254  Identities=52%  Similarity=0.838  Sum_probs=246.7

Q ss_pred             CCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHH
Q 024306            6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKI   85 (269)
Q Consensus         6 ~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i   85 (269)
                      |++|+|++|++|+||+|..|+++|.|+|+++||+++.+.||++++++||++.|++||+|++||||+||+|||+|+++.++
T Consensus        30 g~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i  109 (284)
T PRK14190         30 GIVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAV  109 (284)
T ss_pred             CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEE
Q 024306           86 LDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI  165 (269)
Q Consensus        86 ~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti  165 (269)
                      +++|+|+|||||+|+.|.|+++.|  ..+|+||||.|++++|++|+++++||+|+|||||..||+|++++|.++||+||+
T Consensus       110 ~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~  187 (284)
T PRK14190        110 IERISPEKDVDGFHPINVGRMMLG--QDTFLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTY  187 (284)
T ss_pred             HhcCCccccccccCHhhHHHHhcC--CCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEE
Confidence            999999999999999999999976  568999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCc
Q 024306          166 VHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG  245 (269)
Q Consensus       166 ~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgG  245 (269)
                      ||++|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+++..+      ++++|||||+++.++++++||||||
T Consensus       188 chs~t~~l~~~~~~ADIvI~AvG~p~~i~~~~ik~gavVIDvGi~~~~~------gkl~GDvd~e~v~~~a~~iTPVPGG  261 (284)
T PRK14190        188 CHSKTKNLAELTKQADILIVAVGKPKLITADMVKEGAVVIDVGVNRLEN------GKLCGDVDFDNVKEKASYITPVPGG  261 (284)
T ss_pred             EeCCchhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCEEEEeeccccCC------CCeeccCcHHHHhhhceEecCCCCC
Confidence            9999999999999999999999999999999999999999999998643      1899999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhC
Q 024306          246 VGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       246 vGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      |||+|++|||+|+++++++|.+
T Consensus       262 VGpvT~a~L~~N~~~a~~~~~~  283 (284)
T PRK14190        262 VGPMTITMLMHNTVELAKRAGG  283 (284)
T ss_pred             ChHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999875

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=4.6e-78  Score=542.03  Aligned_cols=248  Identities=39%  Similarity=0.708  Sum_probs=240.7

Q ss_pred             CCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHH
Q 024306            7 KVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKIL   86 (269)
Q Consensus         7 ~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~   86 (269)
                      .+|+|++|++|+||+|..|+++|.|+|+++||+++.+.||++++++|+++.|++||+|++||||+||+|||+|+++.+++
T Consensus        31 ~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~  110 (278)
T PRK14172         31 SIPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKIT  110 (278)
T ss_pred             CCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHH
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEE
Q 024306           87 DAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  166 (269)
Q Consensus        87 ~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~  166 (269)
                      ++|+|+|||||+|+.|.|+++.|  ..+|+||||.|++++|++|+++++||+|+|||||..||+|++++|.++||+||+|
T Consensus       111 ~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~c  188 (278)
T PRK14172        111 NKIDANKDIDCLTFISVGKFYKG--EKCFLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTIC  188 (278)
T ss_pred             hccCcccccCccCHhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEe
Confidence            99999999999999999999977  5679999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCcc
Q 024306          167 HALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV  246 (269)
Q Consensus       167 ~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGv  246 (269)
                      |++|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+|+..+       +++|||||+++.++++++|||||||
T Consensus       189 hs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~~~g-------kl~GDvd~~~v~~~a~~iTPVPGGV  261 (278)
T PRK14172        189 HSKTKNLKEVCKKADILVVAIGRPKFIDEEYVKEGAIVIDVGTSSVNG-------KITGDVNFDKVIDKASYITPVPGGV  261 (278)
T ss_pred             CCCCCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCcEEEEeeccccCC-------ceeeeccHHHHHhhccEecCCCCCc
Confidence            999999999999999999999999999999999999999999998633       8999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHH
Q 024306          247 GPMTVAMLLSNTLDSAK  263 (269)
Q Consensus       247 Gp~T~~mLl~n~v~a~~  263 (269)
                      ||||++|||+|++++++
T Consensus       262 Gp~T~a~L~~N~~~a~~  278 (278)
T PRK14172        262 GSLTTTLLIKNVCEALK  278 (278)
T ss_pred             cHHHHHHHHHHHHHhcC
Confidence            99999999999999863

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1e-77  Score=544.22  Aligned_cols=261  Identities=49%  Similarity=0.760  Sum_probs=247.6

Q ss_pred             CCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCH
Q 024306            3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (269)
Q Consensus         3 ~~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~   82 (269)
                      ++.|++|+|++|++|+||+|..|+++|.|+|+++||+++.+.||++++++|+++.|++||+|++||||+||+|||+|+++
T Consensus        27 ~~~g~~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~  106 (297)
T PRK14186         27 PKAGRPPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDE  106 (297)
T ss_pred             HhcCCCceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE
Q 024306           83 GKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT  162 (269)
Q Consensus        83 ~~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~  162 (269)
                      .+++++|+|+|||||+|+.|.|+++.|  ...|.||||.|++++|++|+++++||+|+|||||..||+|++++|.++||+
T Consensus       107 ~~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~at  184 (297)
T PRK14186        107 VPLLHAIDPDKDADGLHPLNLGRLVKG--EPGLRSCTPAGVMRLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANAT  184 (297)
T ss_pred             HHHHhccCcccCcccCChhhHHHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCE
Confidence            999999999999999999999999976  457999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceeccc
Q 024306          163 VSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPV  242 (269)
Q Consensus       163 Vti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpv  242 (269)
                      ||+||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+++..++. .. ++++|||||+++.++++++|||
T Consensus       185 Vtv~hs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVIDvGin~~~~~~-~~-gkl~GDvd~~~v~~~a~~iTPV  262 (297)
T PRK14186        185 VTIAHSRTQDLASITREADILVAAAGRPNLIGAEMVKPGAVVVDVGIHRLPSSD-GK-TRLCGDVDFEEVEPVAAAITPV  262 (297)
T ss_pred             EEEeCCCCCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCEEEEeccccccccc-cC-CceeCCccHHHHHhhceEecCC
Confidence            999999999999999999999999999999999999999999999999864321 11 2899999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhC
Q 024306          243 PGGVGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       243 pgGvGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      ||||||+|++|||+|+++++++..+
T Consensus       263 PGGVGp~T~a~L~~Nl~~a~~~~~~  287 (297)
T PRK14186        263 PGGVGPMTVTMLLVNTVLSWQKRHG  287 (297)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999987643

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.8e-77  Score=539.08  Aligned_cols=251  Identities=43%  Similarity=0.744  Sum_probs=242.8

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHH
Q 024306            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (269)
Q Consensus         4 ~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~   83 (269)
                      +.+.+|+||+|++|+||+|..|+++|.|+|+++||+++.+.||++++++|+++.|++||+|++||||+||+|||+|+++.
T Consensus        29 ~~~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~  108 (284)
T PRK14177         29 KNKRIPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDER  108 (284)
T ss_pred             cCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHH
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024306           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (269)
Q Consensus        84 ~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~V  163 (269)
                      +++++|+|+|||||+|+.|.|+++.|  ...|+||||.|++++|++|+++++||+|+|||||..||+|++++|.++||+|
T Consensus       109 ~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atV  186 (284)
T PRK14177        109 AAFDRIALEKDVDGVTTLSFGKLSMG--VETYLPCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATV  186 (284)
T ss_pred             HHHhccCcccccccCChhhHHHHHcC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEE
Confidence            99999999999999999999999976  5679999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccC
Q 024306          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP  243 (269)
Q Consensus       164 ti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp  243 (269)
                      |+||++|+++++++++|||||+|+|+|++++++|+++|++|||+|+|+          +++|||||+++.++++++||||
T Consensus       187 t~chs~T~~l~~~~~~ADIvIsAvGk~~~i~~~~ik~gavVIDvGin~----------~~~GDVd~~~v~~~a~~iTPVP  256 (284)
T PRK14177        187 TLCHSKTQNLPSIVRQADIIVGAVGKPEFIKADWISEGAVLLDAGYNP----------GNVGDIEISKAKDKSSFYTPVP  256 (284)
T ss_pred             EEeCCCCCCHHHHHhhCCEEEEeCCCcCccCHHHcCCCCEEEEecCcc----------cccCCcCHHHHhhhccEecCCC
Confidence            999999999999999999999999999999999999999999999987          4789999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHHHHHh
Q 024306          244 GGVGPMTVAMLLSNTLDSAKRAY  266 (269)
Q Consensus       244 gGvGp~T~~mLl~n~v~a~~~~~  266 (269)
                      |||||+|++|||+|+++++++.+
T Consensus       257 GGVGp~T~a~L~~N~~~a~~~~~  279 (284)
T PRK14177        257 GGVGPMTIAVLLLQTLYSFKEHF  279 (284)
T ss_pred             CCChHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999997654

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=3.6e-77  Score=536.45  Aligned_cols=253  Identities=50%  Similarity=0.808  Sum_probs=244.5

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHH
Q 024306            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (269)
Q Consensus         5 ~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~   84 (269)
                      .|++|+|++|++|+||+|..|++.|.|+|+++||+++.+.||++++++++++.|++||+|++||||+||+|||+|+++.+
T Consensus        28 ~g~~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~  107 (281)
T PRK14183         28 KNIVPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTK  107 (281)
T ss_pred             CCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE
Q 024306           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS  164 (269)
Q Consensus        85 i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt  164 (269)
                      ++++|+|+|||||+|+.|.|+++.|  ..+|+||||.|++++|++|+++++||+|+|||+|..||+|++++|.++||+||
T Consensus       108 i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt  185 (281)
T PRK14183        108 ILEAIDPKKDVDGFHPYNVGRLVTG--LDGFVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVD  185 (281)
T ss_pred             HHhccCchhcccccChhhhhHHhcC--CCCCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence            9999999999999999999999976  57899999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCC
Q 024306          165 IVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPG  244 (269)
Q Consensus       165 i~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpg  244 (269)
                      +||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+|+..+      ++++|||||+++.++++++|||||
T Consensus       186 i~hs~T~~l~~~~~~ADIvV~AvGkp~~i~~~~vk~gavvIDvGin~~~~------gkl~GDVd~~~~~~~a~~iTPVPG  259 (281)
T PRK14183        186 ICHIFTKDLKAHTKKADIVIVGVGKPNLITEDMVKEGAIVIDIGINRTED------GRLVGDVDFENVAKKCSYITPVPG  259 (281)
T ss_pred             EeCCCCcCHHHHHhhCCEEEEecCcccccCHHHcCCCcEEEEeeccccCC------CCeECCccHHHHHhhceEecCCCC
Confidence            99999999999999999999999999999999999999999999998533      289999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHHHHHH
Q 024306          245 GVGPMTVAMLLSNTLDSAKRA  265 (269)
Q Consensus       245 GvGp~T~~mLl~n~v~a~~~~  265 (269)
                      ||||+|++|||+|+++++++.
T Consensus       260 GVGpvT~a~L~~N~~~a~~~~  280 (281)
T PRK14183        260 GVGPMTIAMLLSNTLKAAKNR  280 (281)
T ss_pred             CChHHHHHHHHHHHHHHHHhc
Confidence            999999999999999998753

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=8.5e-77  Score=535.96  Aligned_cols=255  Identities=50%  Similarity=0.814  Sum_probs=246.8

Q ss_pred             CCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHH
Q 024306            6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKI   85 (269)
Q Consensus         6 ~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i   85 (269)
                      |++|+|++|++|+||+|..|+++|.|+|+++||+++.+.||++++++|+++.|++||+|++||||+||+|||+|+++.++
T Consensus        30 g~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i  109 (285)
T PRK14189         30 GHQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKV  109 (285)
T ss_pred             CCCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEE
Q 024306           86 LDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI  165 (269)
Q Consensus        86 ~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti  165 (269)
                      +++|+|+|||||+|+.|.|+++.+  ...|+||||.|++++|++|+++++||+|+|||+|+.||+|++++|.++||+||+
T Consensus       110 ~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~  187 (285)
T PRK14189        110 IEAIAPEKDVDGFHVANAGALMTG--QPLFRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTI  187 (285)
T ss_pred             HhhcCcccCcccCChhhhhHhhCC--CCCCcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEE
Confidence            999999999999999999999976  568999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCc
Q 024306          166 VHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG  245 (269)
Q Consensus       166 ~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgG  245 (269)
                      ||++|+++.+.+++|||||+|+|.|++++++|+++|++|||+|+++..+      ++++|||||+++.++++++||||||
T Consensus       188 ~hs~t~~l~~~~~~ADIVV~avG~~~~i~~~~ik~gavVIDVGin~~~~------gkl~GDVd~~~v~~~a~~iTPVPGG  261 (285)
T PRK14189        188 CHSKTRDLAAHTRQADIVVAAVGKRNVLTADMVKPGATVIDVGMNRDDA------GKLCGDVDFAGVKEVAGYITPVPGG  261 (285)
T ss_pred             ecCCCCCHHHHhhhCCEEEEcCCCcCccCHHHcCCCCEEEEccccccCC------CCeeCCccHHHHHhhceEecCCCCC
Confidence            9999999999999999999999999999999999999999999998633      2899999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhCC
Q 024306          246 VGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       246 vGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                      |||+|++|||+|++++++++...
T Consensus       262 VGp~T~a~Ll~N~~~a~~~~~~~  284 (285)
T PRK14189        262 VGPMTITMLLVNTIEAAERAAAA  284 (285)
T ss_pred             chHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999988753

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=9.3e-77  Score=534.99  Aligned_cols=253  Identities=47%  Similarity=0.795  Sum_probs=243.5

Q ss_pred             CCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHH
Q 024306            6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKI   85 (269)
Q Consensus         6 ~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i   85 (269)
                      |++|+||+|++|+||+|..|++.|.++|+++||+++.+.||++++++||++.|++||+|++||||+||+|||+|+++.++
T Consensus        30 g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i  109 (284)
T PRK14193         30 GITPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAV  109 (284)
T ss_pred             CCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh--CCCEE
Q 024306           86 LDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR--HHATV  163 (269)
Q Consensus        86 ~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~--~ga~V  163 (269)
                      +++|+|+|||||+|+.|.|+++.+  ...|+||||.|++++|++|+++++||+|+|||||..||+|++++|.+  +||+|
T Consensus       110 ~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atV  187 (284)
T PRK14193        110 LERIDPAKDADGLHPTNLGRLVLN--EPAPLPCTPRGIVHLLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATV  187 (284)
T ss_pred             HhcCCcccCccCCChhhhhHHhCC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEE
Confidence            999999999999999999999976  46789999999999999999999999999999999999999999998  79999


Q ss_pred             EEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccC
Q 024306          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP  243 (269)
Q Consensus       164 ti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp  243 (269)
                      |+||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+++..+      ++++|||| +++.++++++||||
T Consensus       188 tvchs~T~~l~~~~k~ADIvV~AvGkp~~i~~~~ik~GavVIDvGin~~~~------gkl~GDvd-~~v~~~a~~iTPVP  260 (284)
T PRK14193        188 TLCHTGTRDLAAHTRRADIIVAAAGVAHLVTADMVKPGAAVLDVGVSRAGD------GKLVGDVH-PDVWEVAGAVSPNP  260 (284)
T ss_pred             EEeCCCCCCHHHHHHhCCEEEEecCCcCccCHHHcCCCCEEEEccccccCC------CcEEeecC-HhHHhhCCEEeCCC
Confidence            999999999999999999999999999999999999999999999998533      28999999 88899999999999


Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhC
Q 024306          244 GGVGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       244 gGvGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      |||||||++|||+|+++++++..|
T Consensus       261 GGVGp~T~a~L~~N~~~a~~~~~~  284 (284)
T PRK14193        261 GGVGPMTRAFLLTNVVERAERRAG  284 (284)
T ss_pred             CChhHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999987654

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=9.9e-77  Score=535.05  Aligned_cols=253  Identities=45%  Similarity=0.790  Sum_probs=244.1

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHH
Q 024306            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (269)
Q Consensus         4 ~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~   83 (269)
                      +.|++|+||+|++|+||+|..|+++|.|+|+++||+++.+.||++++++|+++.|++||+|++||||+||+|||+|+++.
T Consensus        34 ~~g~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~  113 (287)
T PRK14176         34 NRGITPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQ  113 (287)
T ss_pred             ccCCCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHH
Confidence            34889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024306           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (269)
Q Consensus        84 ~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~V  163 (269)
                      +++++|+|+|||||+|+.|.|+++.|  ...|+||||+|++++|++|+++++||+|+|||+|..||+|++++|.++||+|
T Consensus       114 ~i~~~I~p~KDVDGl~~~N~g~l~~g--~~~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atV  191 (287)
T PRK14176        114 EAMEAIDPAKDADGFHPYNMGKLMIG--DEGLVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATV  191 (287)
T ss_pred             HHHhccCccccccccChhhhhhHhcC--CCCCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEE
Confidence            99999999999999999999999976  4679999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccC
Q 024306          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP  243 (269)
Q Consensus       164 ti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp  243 (269)
                      |+||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+|+..+       +++|||||+.+.++++++||||
T Consensus       192 tv~hs~T~~l~~~~~~ADIvv~AvG~p~~i~~~~vk~gavVIDvGin~~~g-------kl~GDvd~~~~~~~a~~iTPVP  264 (287)
T PRK14176        192 SVCHVFTDDLKKYTLDADILVVATGVKHLIKADMVKEGAVIFDVGITKEED-------KVYGDVDFENVIKKASLITPVP  264 (287)
T ss_pred             EEEeccCCCHHHHHhhCCEEEEccCCccccCHHHcCCCcEEEEecccccCC-------CccCCcCHHHHHhhceEcCCCC
Confidence            999999999999999999999999999999999999999999999997522       8999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHHHHH
Q 024306          244 GGVGPMTVAMLLSNTLDSAKRA  265 (269)
Q Consensus       244 gGvGp~T~~mLl~n~v~a~~~~  265 (269)
                      |||||+|++|||+|+++++++.
T Consensus       265 GGVGp~T~a~L~~n~~~a~~~~  286 (287)
T PRK14176        265 GGVGPLTIAMLMKHVLMCAEKS  286 (287)
T ss_pred             CCChHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999998753

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.4e-76  Score=534.59  Aligned_cols=256  Identities=45%  Similarity=0.741  Sum_probs=243.5

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHH
Q 024306            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (269)
Q Consensus         5 ~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~   84 (269)
                      .+++|+|++|+||+||+|.+|+++|.++|+++||+++.+.||++++++||++.|++||+|++||||+||+|||+|+++.+
T Consensus        26 l~~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~  105 (287)
T PRK14173         26 LPFVPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPPHIDFQR  105 (287)
T ss_pred             hCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE
Q 024306           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS  164 (269)
Q Consensus        85 i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt  164 (269)
                      ++++|+|+|||||+|+.|.|+++.|  ...|+||||.|++++|++|+++++||+|+|||+|..||+|++++|.++||+||
T Consensus       106 i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt  183 (287)
T PRK14173        106 VLEAIDPLKDVDGFHPLNVGRLWMG--GEALEPCTPAGVVRLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVT  183 (287)
T ss_pred             HHhccCccccccccChhhhHHHhcC--CCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE
Confidence            9999999999999999999999976  46799999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCce--eecccchHHHhhHcceeccc
Q 024306          165 IVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYR--LMGDVCYEEAMRLASVITPV  242 (269)
Q Consensus       165 i~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~--l~GDvd~~~~~~~~~~~tpv  242 (269)
                      +||++|+++++.+++|||||+|+|+|++++++|+++|++|||+|+|+..++++    +  ++|||| .++.++++++|||
T Consensus       184 ichs~T~~l~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVIDVGin~~~~~~g----k~~l~GDVd-~~v~~~a~~iTPV  258 (287)
T PRK14173        184 LAHSKTQDLPAVTRRADVLVVAVGRPHLITPEMVRPGAVVVDVGINRVGGNGG----RDILTGDVH-PEVAEVAGALTPV  258 (287)
T ss_pred             EeCCCCCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCEEEEccCccccCCCC----ceeeecccc-HhHHhhCcEEecC
Confidence            99999999999999999999999999999999999999999999998622122    5  999999 5789999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhC
Q 024306          243 PGGVGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       243 pgGvGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      ||||||+|++|||+|+++++++..+
T Consensus       259 PGGVGp~T~a~L~~N~~~a~~~~~~  283 (287)
T PRK14173        259 PGGVGPMTVAMLMANTVIAALRRRG  283 (287)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999999986543

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.4e-76  Score=534.06  Aligned_cols=256  Identities=50%  Similarity=0.806  Sum_probs=246.7

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHH
Q 024306            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (269)
Q Consensus         4 ~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~   83 (269)
                      +.+++|+|++|+||+||+|..|+++|.|+|+++||+++.+.||++++++||++.|++||+|++||||+||+|||+|+++.
T Consensus        29 ~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~  108 (285)
T PRK10792         29 AGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDNV  108 (285)
T ss_pred             cCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHH
Confidence            34778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024306           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (269)
Q Consensus        84 ~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~V  163 (269)
                      +++++|+|+|||||+|+.|.|+|+.|  ..+|+||||.|++++|++|+++++||+|+|||+|..||+|++++|.++||+|
T Consensus       109 ~i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atV  186 (285)
T PRK10792        109 KVLERIHPDKDVDGFHPYNVGRLAQR--IPLLRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTV  186 (285)
T ss_pred             HHHhccCcccccCccChhhHhHHhCC--CCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeE
Confidence            99999999999999999999999876  5679999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccC
Q 024306          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP  243 (269)
Q Consensus       164 ti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp  243 (269)
                      |+||++|+++.+.+++|||||+|+|+|++++++|+++|++|||+|+|+..+      ++++|||||+.+.++++++||||
T Consensus       187 tv~hs~T~~l~~~~~~ADIvi~avG~p~~v~~~~vk~gavVIDvGin~~~~------gk~~GDvd~~~~~~~a~~itPvP  260 (285)
T PRK10792        187 TVCHRFTKNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVIDVGINRLED------GKLVGDVEFETAAERASWITPVP  260 (285)
T ss_pred             EEEECCCCCHHHHHhhCCEEEEcCCCcccccHHHcCCCcEEEEcccccccC------CCcCCCcCHHHHHhhccCcCCCC
Confidence            999999999999999999999999999999999999999999999998643      17999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhC
Q 024306          244 GGVGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       244 gGvGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      |||||+|++|||+|+++++++|..
T Consensus       261 GGVGp~T~a~L~~N~~~a~~~~~~  284 (285)
T PRK10792        261 GGVGPMTVATLLENTLQACEEYHD  284 (285)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999864

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.4e-76  Score=534.12  Aligned_cols=255  Identities=50%  Similarity=0.776  Sum_probs=245.8

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHH
Q 024306            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (269)
Q Consensus         4 ~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~   83 (269)
                      +.|++|+|++|++|+||+|.+|+++|.++|+++||+++.+.||++++++|+++.|++||+|++||||+||+|||+|+++.
T Consensus        27 ~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~  106 (285)
T PRK14191         27 QTGKRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTK  106 (285)
T ss_pred             cCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024306           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (269)
Q Consensus        84 ~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~V  163 (269)
                      +++++|+|+|||||+|+.|.|+++.|  ..+|+||||.|++++|++|+++++||+|+|||+|..||+|++++|.++||+|
T Consensus       107 ~i~~~I~p~KDVDGl~~~n~g~l~~g--~~~~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtV  184 (285)
T PRK14191        107 MVLEAIDPNKDVDGFHPLNIGKLCSQ--LDGFVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASV  184 (285)
T ss_pred             HHHhcCCccccccccChhhHHHHhcC--CCCCCCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEE
Confidence            99999999999999999999999976  5689999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccC
Q 024306          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP  243 (269)
Q Consensus       164 ti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp  243 (269)
                      |+||++|+++.+++++|||||+|+|.|++++++|+++|++|||+|+++..+      ++++|||||+++.++++++||||
T Consensus       185 tv~hs~t~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~GavVIDvGi~~~~~------gklvGDvd~e~v~~~a~~iTPVP  258 (285)
T PRK14191        185 SVCHILTKDLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVVDIGINRLND------GRLVGDVDFENVAPKASFITPVP  258 (285)
T ss_pred             EEEeCCcHHHHHHHHhCCEEEEecCCCCcCCHHHcCCCcEEEEeecccccC------CceeccccHHHHhhhccEEecCC
Confidence            999999999999999999999999999999999999999999999998633      28999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHHHHHh
Q 024306          244 GGVGPMTVAMLLSNTLDSAKRAY  266 (269)
Q Consensus       244 gGvGp~T~~mLl~n~v~a~~~~~  266 (269)
                      |||||+|++|||+|+++++++..
T Consensus       259 GGVGpvT~a~L~~N~~~a~~~~~  281 (285)
T PRK14191        259 GGVGPMTIVSLLENTLIAAEKRQ  281 (285)
T ss_pred             CCChHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998653

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=4.8e-76  Score=533.79  Aligned_cols=264  Identities=51%  Similarity=0.817  Sum_probs=248.2

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHH
Q 024306            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (269)
Q Consensus         4 ~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~   83 (269)
                      +.|++|+|++|++|+||+|..|+++|.|+|+++||+++.+.||++++++|+++.|++||+|++||||+||+|||+|+++.
T Consensus        27 ~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~  106 (295)
T PRK14174         27 KTGKVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEF  106 (295)
T ss_pred             ccCCCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh----C
Q 024306           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----H  159 (269)
Q Consensus        84 ~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~----~  159 (269)
                      +++++|+|+|||||+|+.|.|+++.|+...+|+||||.|++++|++|+++++||+|+|||||..||+|++++|.+    +
T Consensus       107 ~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~  186 (295)
T PRK14174        107 AVTLAIDPAKDVDGFHPENLGRLVMGHLDKCFVSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKES  186 (295)
T ss_pred             HHHhcCCccccccccChhhHHHHhcCCCCCCcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccC
Confidence            999999999999999999999999775347899999999999999999999999999999999999999999988    7


Q ss_pred             CCEEEEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHccee
Q 024306          160 HATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVI  239 (269)
Q Consensus       160 ga~Vti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~  239 (269)
                      +++|++||++|.++.+++++|||||+|+|+|++++++|+++|++|||+|+++..++.++.|++++|||||+++.++++++
T Consensus       187 ~atVt~~hs~t~~l~~~~~~ADIvI~Avg~~~li~~~~vk~GavVIDVgi~~~~~~~~~~g~kl~GDVd~~~v~~~a~~i  266 (295)
T PRK14174        187 NCTVTICHSATKDIPSYTRQADILIAAIGKARFITADMVKPGAVVIDVGINRIEDPSTKSGYRLVGDVDYEGVSAKASAI  266 (295)
T ss_pred             CCEEEEEeCCchhHHHHHHhCCEEEEecCccCccCHHHcCCCCEEEEeeccccccccccCCCceECCcCHHHHHhhccEe
Confidence            89999999999999999999999999999999999999999999999999986432222234899999999999999999


Q ss_pred             cccCCcccHHHHHHHHHHHHHHHHHHhC
Q 024306          240 TPVPGGVGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       240 tpvpgGvGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      |||||||||+|++|||+|+++++++...
T Consensus       267 TPVPGGVGp~T~a~L~~Nl~~a~~~~~~  294 (295)
T PRK14174        267 TPVPGGVGPMTIAMLLKNTLQSFERVNN  294 (295)
T ss_pred             cCCCCCchHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999987653

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=4.3e-76  Score=531.18  Aligned_cols=256  Identities=48%  Similarity=0.794  Sum_probs=247.2

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHH
Q 024306            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (269)
Q Consensus         4 ~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~   83 (269)
                      +.|++|+|++|++|+||+|..|+++|.++|+++||+++.+.||++++++|+++.|++||+|++||||+||+|||+|+++.
T Consensus        28 ~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~  107 (284)
T PRK14179         28 EKGIVPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEE  107 (284)
T ss_pred             ccCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024306           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (269)
Q Consensus        84 ~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~V  163 (269)
                      +++++|+|+|||||+|+.|.|+++.|  .++|+||||.|++++|++|+++++||+|+|||+|+.||+|++.+|.++|++|
T Consensus       108 ~i~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatV  185 (284)
T PRK14179        108 KILLAIDPKKDVDGFHPMNTGHLWSG--RPVMIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATV  185 (284)
T ss_pred             HHHhccCccccccccCHhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEE
Confidence            99999999999999999999999976  5779999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccC
Q 024306          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP  243 (269)
Q Consensus       164 ti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp  243 (269)
                      ++||++++++++.+++|||||+|+|.|++++++|+++|++|||+|+|+..+      ++++|||||+++.++++++||||
T Consensus       186 tv~~s~t~~l~~~~~~ADIVI~avg~~~~v~~~~ik~GavVIDvgin~~~~------gkl~GDVdf~~v~~~a~~iTPVP  259 (284)
T PRK14179        186 TLTHSRTRNLAEVARKADILVVAIGRGHFVTKEFVKEGAVVIDVGMNRDEN------GKLIGDVDFDEVAEVASYITPVP  259 (284)
T ss_pred             EEECCCCCCHHHHHhhCCEEEEecCccccCCHHHccCCcEEEEecceecCC------CCeecCccHHHHHhhccEecCCC
Confidence            999999999999999999999999999999999999999999999998643      28999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhC
Q 024306          244 GGVGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       244 gGvGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      |||||+|++|||+|+++++++|+-
T Consensus       260 GGVGp~T~a~L~~N~~~a~~~~~~  283 (284)
T PRK14179        260 GGVGPMTITMLMEQTYQAALRSLH  283 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999974

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=7.3e-76  Score=530.55  Aligned_cols=255  Identities=49%  Similarity=0.815  Sum_probs=246.3

Q ss_pred             CCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHH
Q 024306            6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKI   85 (269)
Q Consensus         6 ~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i   85 (269)
                      |++|+|++|+||+||+|.+|+++|.|+|+++||+++.+.||++++++|+++.|++||+|++||||+||+|||+|+++.++
T Consensus        30 g~~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i  109 (286)
T PRK14175         30 GFTPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKI  109 (286)
T ss_pred             CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEE
Q 024306           86 LDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI  165 (269)
Q Consensus        86 ~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti  165 (269)
                      +++|+|+|||||+|+.|.|+|+.|  ..+|+||||.|++++|++|+++++||+|+|||+|+.||+|++++|.++||+|++
T Consensus       110 ~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv  187 (286)
T PRK14175        110 LEAINPEKDVDGFHPINIGKLYID--EQTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTI  187 (286)
T ss_pred             HhccCcccCcccCCccchHhHhcC--CCCCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEE
Confidence            999999999999999999999976  568999999999999999999999999999999998899999999999999999


Q ss_pred             EeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCc
Q 024306          166 VHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG  245 (269)
Q Consensus       166 ~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgG  245 (269)
                      ||++|+++.+++++|||||+|+|+|++++++|+++|++|||+|+++..+      ++++|||||+++.++++++||||||
T Consensus       188 ~~s~t~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gavVIDvGi~~~~~------gkl~GDvd~~~~~~~a~~iTPVPGG  261 (286)
T PRK14175        188 LHSRSKDMASYLKDADVIVSAVGKPGLVTKDVVKEGAVIIDVGNTPDEN------GKLKGDVDYDAVKEIAGAITPVPGG  261 (286)
T ss_pred             EeCCchhHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEcCCCcCCC------CCeecCccHHHHHhhccCcCCCCCC
Confidence            9999999999999999999999999999999999999999999998533      2899999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhCC
Q 024306          246 VGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       246 vGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                      |||+|++|||+|+++++++..++
T Consensus       262 VGp~T~a~L~~n~~~a~~~~~~~  284 (286)
T PRK14175        262 VGPLTITMVLNNTLLAEKMRRGI  284 (286)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999987665

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=5.4e-75  Score=522.37  Aligned_cols=252  Identities=48%  Similarity=0.761  Sum_probs=243.9

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHH
Q 024306            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (269)
Q Consensus         5 ~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~   84 (269)
                      .|++|+||+|+||+||+|.+|+++|.|+|+++||+++.+.||++++++||++.|++||+|++||||+||+|||+|+++.+
T Consensus        23 lg~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~  102 (279)
T PRK14178         23 SGLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTER  102 (279)
T ss_pred             hCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE
Q 024306           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS  164 (269)
Q Consensus        85 i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt  164 (269)
                      ++++|+|+|||||+|+.|.|+++.|  ..+|+||||.|++++|++|+++++||+|+|+|+|..||||++++|.++||+|+
T Consensus       103 v~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVt  180 (279)
T PRK14178        103 VIAAILPEKDVDGFHPLNLGRLVSG--LPGFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVT  180 (279)
T ss_pred             HHhccCcccCcccCChhhHHHHhCC--CCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeE
Confidence            9999999999999999999999976  57899999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCC
Q 024306          165 IVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPG  244 (269)
Q Consensus       165 i~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpg  244 (269)
                      +||++|+++.+.+++||+||+|+|+|++++++|+++|++|||+|+++.++       +++|||||+++.++++++|||||
T Consensus       181 v~hs~t~~L~~~~~~ADIvI~Avgk~~lv~~~~vk~GavVIDVgi~~~~g-------kl~GDvdf~~~~~~a~~iTPVPG  253 (279)
T PRK14178        181 ICHSKTENLKAELRQADILVSAAGKAGFITPDMVKPGATVIDVGINQVNG-------KLCGDVDFDAVKEIAGAITPVPG  253 (279)
T ss_pred             EEecChhHHHHHHhhCCEEEECCCcccccCHHHcCCCcEEEEeeccccCC-------CCcCCccHHHHHhhccCcCCCCC
Confidence            99999999999999999999999999999999999999999999998532       89999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHHHHHH
Q 024306          245 GVGPMTVAMLLSNTLDSAKRA  265 (269)
Q Consensus       245 GvGp~T~~mLl~n~v~a~~~~  265 (269)
                      ||||+|++|||+|+++++++.
T Consensus       254 GVGp~T~a~L~~N~~~a~~~~  274 (279)
T PRK14178        254 GVGPMTIATLMENTFDAAKMR  274 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998753

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.8e-74  Score=523.90  Aligned_cols=257  Identities=48%  Similarity=0.817  Sum_probs=246.2

Q ss_pred             CCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHH
Q 024306            6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKI   85 (269)
Q Consensus         6 ~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i   85 (269)
                      |++|+|++|++|+||+|..|++.|.|+|+++||+++.+.||++++++|+++.|++||+|++||||+||+|||+|+++.++
T Consensus        31 g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i  110 (301)
T PRK14194         31 GIEPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARV  110 (301)
T ss_pred             CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEE
Q 024306           86 LDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI  165 (269)
Q Consensus        86 ~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti  165 (269)
                      +++|+|+|||||+|+.|.|+++.|  .++|+||||.|++++|++|+++++||+|+|||+|+.||+|++.+|.++|++|++
T Consensus       111 ~~~I~p~KDVDGl~~~N~g~l~~~--~~~~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv  188 (301)
T PRK14194        111 LQAINPLKDVDGFHSENVGGLSQG--RDVLTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTV  188 (301)
T ss_pred             HhccCchhccCccChhhhhHHhcC--CCCCCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEE
Confidence            999999999999999999999976  568999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCc
Q 024306          166 VHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGG  245 (269)
Q Consensus       166 ~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgG  245 (269)
                      ||++++++++.+++|||||+++|.|++++++|+++|++|||+++|+..+. +  .++++|||||+++.++++++||||||
T Consensus       189 ~~~~t~~l~e~~~~ADIVIsavg~~~~v~~~~ik~GaiVIDvgin~~~~~-g--~~kl~GDvdf~~~~~~a~~iTPVPGG  265 (301)
T PRK14194        189 VHSRSTDAKALCRQADIVVAAVGRPRLIDADWLKPGAVVIDVGINRIDDD-G--RSRLVGDVDFDSALPVVSAITPVPGG  265 (301)
T ss_pred             ECCCCCCHHHHHhcCCEEEEecCChhcccHhhccCCcEEEEecccccCCC-C--CcceecccchHHHHhhcceecCCCCc
Confidence            99999999999999999999999999999999999999999999985321 1  12799999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhC
Q 024306          246 VGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       246 vGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      |||||++|||+|+++++++|..
T Consensus       266 VGp~Tva~L~~N~~~a~~~~~~  287 (301)
T PRK14194        266 VGPMTIAFLMKNTVTAARLQAH  287 (301)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999864

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=5.3e-73  Score=514.94  Aligned_cols=260  Identities=49%  Similarity=0.799  Sum_probs=245.4

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHH
Q 024306            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (269)
Q Consensus         5 ~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~   84 (269)
                      .|++|+|++|++|+||+|..|+++|.|+|+++||+++.+.||++++++|+++.|++||+|++||||+||+|||+|+++.+
T Consensus        29 ~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~  108 (296)
T PRK14188         29 HGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEA  108 (296)
T ss_pred             cCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE
Q 024306           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS  164 (269)
Q Consensus        85 i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt  164 (269)
                      ++++|+|+|||||+|+.|.|+++.|  ..+|+||||.|++++|++|+++++||+|+|||+++.+|+|+|.+|.++|++|+
T Consensus       109 i~~~I~p~KDVDGl~~~n~g~l~~~--~~~~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt  186 (296)
T PRK14188        109 VIQAIDPEKDVDGLHVVNAGRLATG--ETALVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVT  186 (296)
T ss_pred             HHhccCcccccccCChhhHHHHhCC--CCCCcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE
Confidence            9999999999999999999999976  57899999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCc-eeecccchHHHhhHcceecccC
Q 024306          165 IVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGY-RLMGDVCYEEAMRLASVITPVP  243 (269)
Q Consensus       165 i~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~-~l~GDvd~~~~~~~~~~~tpvp  243 (269)
                      +||++|+++.+.+++|||||+++|.|++++++|+++|++|||+|+++..++++.+|+ +++|||||+++.++++++||||
T Consensus       187 v~~~rT~~l~e~~~~ADIVIsavg~~~~v~~~~lk~GavVIDvGin~~~~~~~~~g~~~l~GDvd~~~v~~~a~~iTPVP  266 (296)
T PRK14188        187 IAHSRTRDLPAVCRRADILVAAVGRPEMVKGDWIKPGATVIDVGINRIPAPEKGEGKTRLVGDVAFAEAAEVAGAITPVP  266 (296)
T ss_pred             EECCCCCCHHHHHhcCCEEEEecCChhhcchheecCCCEEEEcCCcccCCccccCCCceeeCCCCHHHHHhhccEecCCC
Confidence            999888899999999999999999999999999999999999999985321111122 6999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHHHHHh
Q 024306          244 GGVGPMTVAMLLSNTLDSAKRAY  266 (269)
Q Consensus       244 gGvGp~T~~mLl~n~v~a~~~~~  266 (269)
                      |||||||++|||+|+++++++..
T Consensus       267 GGVGp~T~a~L~~N~~~a~~~~~  289 (296)
T PRK14188        267 GGVGPMTIACLLANTLTAACRAA  289 (296)
T ss_pred             CChhHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999998653

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=100.00  E-value=2.8e-72  Score=531.45  Aligned_cols=263  Identities=52%  Similarity=0.849  Sum_probs=257.7

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHH
Q 024306            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (269)
Q Consensus         4 ~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~   83 (269)
                      .-+++|.|+|||||++++|..|+++|.|++++.||++.++.||+++++-|++..|.+||+|+.||||+||+|||.|+|++
T Consensus        30 ~PnF~p~LaIiQVGnR~DSnvYVrmKlKAA~e~Gid~~~iklPetiTe~ell~~I~~lNeD~tvHGiiVQLPLp~hide~  109 (935)
T KOG4230|consen   30 HPNFKPVLAIIQVGNREDSNVYVRMKLKAAKEIGIDAKHIKLPETITEGELLREIKALNEDPTVHGIIVQLPLPAHIDED  109 (935)
T ss_pred             CCCCCceEEEEEecCcCCcceeehhhhhHHHhcCCceEEecCcccccHHHHHHHHHhccCCCccceEEEeccCccccchh
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024306           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (269)
Q Consensus        84 ~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~V  163 (269)
                      .+.++|+|+||||||+..|.|+|..++.++.|+||||.||+++|+++++.+.||+++|+|||.+||.|++.+|...+++|
T Consensus       110 ~Vt~aI~peKDVDGf~~~NaG~Lak~~g~p~f~PCTPkGcmeLlk~a~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTV  189 (935)
T KOG4230|consen  110 TVTEAIDPEKDVDGFTRINAGRLAKGEGQPTFIPCTPKGCMELLKEAGVFVAGKNAVVLGRSKIVGSPIAALLLWANATV  189 (935)
T ss_pred             hHhhccCcccccccccccchhhhhccCCCceeeccChHHHHHHHHHcCCccccceeEEEecccccCChHHHHHHhcCceE
Confidence            99999999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccC
Q 024306          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP  243 (269)
Q Consensus       164 ti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp  243 (269)
                      |+||++|+++.+.+.+|||||.|+|.|+|++.||+|||++|||+|+|...++++.+|++++|||||+++.+.++++||||
T Consensus       190 TiCHSKT~~lae~v~~ADIvIvAiG~PefVKgdWiKpGavVIDvGINyvpD~~Kksg~klvGDVdfe~Akevas~ITPVP  269 (935)
T KOG4230|consen  190 TICHSKTRNLAEKVSRADIVIVAIGQPEFVKGDWIKPGAVVIDVGINYVPDPSKKSGFKLVGDVDFESAKEVASFITPVP  269 (935)
T ss_pred             EEecCCCccHHHHhccCCEEEEEcCCcceeecccccCCcEEEEccccccCCCCCcccceEeeecchHhhhhhhhccccCC
Confidence            99999999999999999999999999999999999999999999999999998888999999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHHHHHh
Q 024306          244 GGVGPMTVAMLLSNTLDSAKRAY  266 (269)
Q Consensus       244 gGvGp~T~~mLl~n~v~a~~~~~  266 (269)
                      |||||||++|||+|++++++|+.
T Consensus       270 GGVGPMTVAMLmqNtveaAKR~r  292 (935)
T KOG4230|consen  270 GGVGPMTVAMLMQNTVEAAKRQR  292 (935)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999875

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=100.00  E-value=1.1e-71  Score=505.23  Aligned_cols=255  Identities=42%  Similarity=0.713  Sum_probs=244.7

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHH
Q 024306            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (269)
Q Consensus         4 ~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~   83 (269)
                      +.|++|+|++|++|+||+|.+|++.|+++|+++||+++|+.||+++++++|.+.|++||+|+++||||||+|||+++++.
T Consensus        29 ~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~  108 (283)
T PRK14192         29 KTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDER  108 (283)
T ss_pred             ccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHH
Confidence            44889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024306           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (269)
Q Consensus        84 ~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~V  163 (269)
                      +++++|+|+||+||+|++|.|+++.|  .+.|.|||+.|++++|++++++++||+|+|+|+|+.||||++++|.++||+|
T Consensus       109 ~~ld~I~~aKDVdg~n~~n~G~l~~~--~~~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatV  186 (283)
T PRK14192        109 ACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATV  186 (283)
T ss_pred             HHHhccCHHHhcCCCCccccCccccC--CCcccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEE
Confidence            99999999999999999999999876  5678999999999999999999999999999999977999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccC
Q 024306          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP  243 (269)
Q Consensus       164 ti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp  243 (269)
                      ++|||+++++.+.+++|||||+|||.|++++.+|+++|++|+|++|+|.++       +++|||||+++.++++++||||
T Consensus       187 tv~~~~t~~L~~~~~~aDIvI~AtG~~~~v~~~~lk~gavViDvg~n~~~~-------~~~GDvd~~~~~~~a~~itPvP  259 (283)
T PRK14192        187 TICHSRTQNLPELVKQADIIVGAVGKPELIKKDWIKQGAVVVDAGFHPRDG-------GGVGDIELQGIEEIASAYTPVP  259 (283)
T ss_pred             EEEeCCchhHHHHhccCCEEEEccCCCCcCCHHHcCCCCEEEEEEEeecCC-------CCcccccHHHhhccceEeCCCC
Confidence            999999999999999999999999999999999999999999999999643       6899999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhC
Q 024306          244 GGVGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       244 gGvGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      |||||+|++|||+|+++++++.+|
T Consensus       260 GGVGp~T~a~L~~n~~~~~~~~~~  283 (283)
T PRK14192        260 GGVGPMTINTLIRQTVEAAEKALG  283 (283)
T ss_pred             CcChHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999998765

>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]

Probab=100.00  E-value=1.2e-67  Score=463.03  Aligned_cols=267  Identities=60%  Similarity=0.933  Sum_probs=254.1

Q ss_pred             CCCCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCC
Q 024306            1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHL   80 (269)
Q Consensus         1 ~~~~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~   80 (269)
                      |++..|..|+|+.++||++|+|+.|+.+++++|+++||....+.++++.+++++++.|.++|.|++||||+||+|+|+|+
T Consensus        31 ~~~~~g~~P~L~~~lvg~~pas~~Ya~~k~kac~~vGi~s~~~~l~~~~~~~~l~~~i~~~N~d~sV~GilV~~pv~~h~  110 (309)
T KOG0089|consen   31 MKESNGKVPGLVGFLVGEDPASQMYATNKTKACEEVGIKSFQYELPESESEDELESAIAEANNDPSVHGILVQLPVPQHI  110 (309)
T ss_pred             HHhcCCCCCceeEEEeCCCcchHHHHHHHHHHHHHhhhcccccccccccCHHHHHHHHHHhcCCCceeeEEEEeeccccc
Confidence            46677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC-
Q 024306           81 DEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH-  159 (269)
Q Consensus        81 ~~~~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~-  159 (269)
                      +++.+++.++++|||||+|+.|.|+|......+.|+||||.|++++|+++++.+.||+++|+|||..||+|+|.+|+.. 
T Consensus       111 ~eq~i~n~Vs~eKDVDgfh~~Nigrl~ld~~~~~~lPcTP~gv~eiL~r~gI~~~GKn~VVigRS~iVg~P~A~LL~~dG  190 (309)
T KOG0089|consen  111 QEQYILNAVSPEKDVDGFHPLNIGRLALDGREPLFLPCTPLGVVEILERTGIETYGKNAVVIGRSKIVGMPLALLLHNDG  190 (309)
T ss_pred             cHHHHHhhcCcccccccccccchhhhccccccccccCCchHHHHHHHHHhCCeecCceEEEEcccccccchHHHHHhhcC
Confidence            9999999999999999999999999987655667999999999999999999999999999999999999999999998 


Q ss_pred             -------CCEEEEEeCCCC--CHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchH
Q 024306          160 -------HATVSIVHALTK--NPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYE  230 (269)
Q Consensus       160 -------ga~Vti~~~~t~--~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~  230 (269)
                             .|+|+++||.|+  +++.+++.|||+|+|+|.|++++.+|+++|+.++|+++|+..+|++..+.+|+||+||+
T Consensus       191 ~~~~~~~datVti~hr~t~~~~lk~ht~~adivi~a~g~p~li~~d~Ik~Ga~vidvgin~v~dp~~a~~~klvgdvdFe  270 (309)
T KOG0089|consen  191 AHVYSVDDATVTIFHRYTSKPQLKHHTRDADIVISAVGIPNLITSDMIKPGAAVIDVGINRVHDPSTAVGIKLVGDVDFE  270 (309)
T ss_pred             CcccccCcceEEEEEcCCCchhHHHHHHhcceeehhcCCCcccccceeecCceeEecCCCcccccccceeeEEeeeccHH
Confidence                   578999999985  46889999999999999999999999999999999999999998876677999999999


Q ss_pred             HHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhC
Q 024306          231 EAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       231 ~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      .+..+++++||||||+||||++|||+|+++++++.+.
T Consensus       271 ~~~~kag~itpVPggvGpmTiAMLl~Ntl~~ak~v~~  307 (309)
T KOG0089|consen  271 EASKKAGAITPVPGGVGPMTIAMLLRNTLRAAKRVFL  307 (309)
T ss_pred             HhhhhcCccccCCCCCCchhHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999996653

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=100.00  E-value=7.9e-49  Score=327.72  Aligned_cols=160  Identities=54%  Similarity=0.872  Sum_probs=137.9

Q ss_pred             ccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhhcC
Q 024306           99 HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITS  178 (269)
Q Consensus        99 ~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~  178 (269)
                      |++|.|+|+.+  ++.|+||||.|++++|++|+++++||+|+|||+|..||+|++.+|.++||+|++||++|+++++.++
T Consensus         1 hp~N~g~l~~~--~~~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~   78 (160)
T PF02882_consen    1 HPLNLGRLVSG--QPGFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITR   78 (160)
T ss_dssp             SHHHHHHHHTT--TTSS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHT
T ss_pred             CcHhHHHHhCC--CCCCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceee
Confidence            78999999976  7899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHH
Q 024306          179 EADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNT  258 (269)
Q Consensus       179 ~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~  258 (269)
                      +|||||+|+|.|++++++|+|+|++|||+|+++...     +++++|||||+++.++++++|||||||||+|++|||+|+
T Consensus        79 ~ADIVVsa~G~~~~i~~~~ik~gavVIDvG~~~~~~-----~~~~~GDv~~~~~~~~a~~itPvPgGVGplT~a~L~~N~  153 (160)
T PF02882_consen   79 RADIVVSAVGKPNLIKADWIKPGAVVIDVGINYVPG-----DGKLVGDVDFESVKEKASAITPVPGGVGPLTVAMLMKNL  153 (160)
T ss_dssp             TSSEEEE-SSSTT-B-GGGS-TTEEEEE--CEEETT-----TTEEEESB-HHHHHTTCSEEE-SSSSCHHHHHHHHHHHH
T ss_pred             eccEEeeeeccccccccccccCCcEEEecCCccccc-----cceeeecccHHHhhccceEEeeCCCCccHHHHHHHHHHH
Confidence            999999999999999999999999999999998721     238999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 024306          259 LDSAKRA  265 (269)
Q Consensus       259 v~a~~~~  265 (269)
                      ++++|++
T Consensus       154 v~a~~~~  160 (160)
T PF02882_consen  154 VKAAKRQ  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9999874

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=100.00  E-value=1e-42  Score=296.99  Aligned_cols=157  Identities=31%  Similarity=0.449  Sum_probs=142.1

Q ss_pred             ccccccccccceecccccCCC-------CCccccCCHHHHHHHHHHhCC---------CCccceEEEEcCCcccHHHHHH
Q 024306           91 LEKDVDGFHPLNIGNLAMRGR-------EPLFIPCTPKGCIELLIRSGV---------EIMGKNAVVIGRSNIVGLPTSL  154 (269)
Q Consensus        91 p~kdvdg~~~~n~g~l~~g~~-------~~~~~p~t~~g~~~~l~~~~~---------~l~gk~v~ViG~gg~vg~~~a~  154 (269)
                      |+|||||+|+.|.|+|+.+..       ...|+||||+|++++|++|++         +++||+|+|||+|..||+|++.
T Consensus         1 P~KDVDGl~~~n~g~l~~~~~~~~~~~~~~~~~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~   80 (197)
T cd01079           1 PHKDVEGLSHKYIFNLYHNIRFLDPENRKKSILPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAA   80 (197)
T ss_pred             CCCCcCCCCHHHHHHHhcCCccccccccCCCccCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHH
Confidence            689999999999999986531       157999999999999999976         8999999999999999999999


Q ss_pred             HHHhCCCEEEEE---------------eCCC--CC----HhhhcCCCCEEEeccCCCCc-ccCCCcCCCcEEEEeeecCC
Q 024306          155 LLQRHHATVSIV---------------HALT--KN----PEQITSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCPV  212 (269)
Q Consensus       155 ~L~~~ga~Vti~---------------~~~t--~~----l~~~~~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~~~~  212 (269)
                      +|.++||+|++|               |+++  ++    +.+.+++|||||+|+|+|++ +++||+++|++|||+|++. 
T Consensus        81 lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~d~ik~GavVIDVGi~~-  159 (197)
T cd01079          81 LLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPTELLKDGAICINFASIK-  159 (197)
T ss_pred             HHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCccCHHHcCCCcEEEEcCCCc-
Confidence            999999999999               5555  35    78999999999999999999 9999999999999999863 


Q ss_pred             CCCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHH
Q 024306          213 DDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA  265 (269)
Q Consensus       213 ~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~  265 (269)
                                   |+| +++.++++++|||   |||+|++|||+|++++++++
T Consensus       160 -------------dvd-~~v~~~as~iTPv---VGpvTva~L~~Nlv~~~~~~  195 (197)
T cd01079         160 -------------NFE-PSVKEKASIYVPS---IGKVTIAMLLRNLLRLYHNQ  195 (197)
T ss_pred             -------------Ccc-HhHHhhcCEeCCC---cCHHHHHHHHHHHHHHHHHh
Confidence                         445 5778999999987   99999999999999999865

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=100.00  E-value=1.4e-39  Score=274.63  Aligned_cols=168  Identities=58%  Similarity=0.906  Sum_probs=156.4

Q ss_pred             ccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306           91 LEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus        91 p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      |+|||||++..|.|+++.+  ...|+|||+.+++++++++..+++||+|+|||+|+++|++++++|.++|++|++++|++
T Consensus         1 ~~kdvdg~~~~~~~~~~~~--~~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~   78 (168)
T cd01080           1 PEKDVDGLHPVNLGRLALG--RPGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT   78 (168)
T ss_pred             CCccccCCCccchhhHhcC--CCCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence            6899999999999999855  47899999999999999999999999999999999889999999999999999999999


Q ss_pred             CCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCcccHHH
Q 024306          171 KNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMT  250 (269)
Q Consensus       171 ~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T  250 (269)
                      +++.+.+++||+||+|||+|+++++++++++.++||++.+|..+  . ..++++||+|++.+.+++.++||+||||||+|
T Consensus        79 ~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~viIDla~prdvd--~-~~~~~~G~~d~~~~~~~~~~~~~~pggvgp~t  155 (168)
T cd01080          79 KNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVIDVGINRVPD--K-SGGKLVGDVDFESAKEKASAITPVPGGVGPMT  155 (168)
T ss_pred             hhHHHHHhhCCEEEEcCCCCceecHHHccCCeEEEEccCCCccc--c-cCCCeeCCcCHHHHHhhccCcCCCCCcChHHH
Confidence            99999999999999999999999999999999999999999755  1 12389999999998999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 024306          251 VAMLLSNTLDSAK  263 (269)
Q Consensus       251 ~~mLl~n~v~a~~  263 (269)
                      ++|||+|++++++
T Consensus       156 ~a~l~~n~~~~~~  168 (168)
T cd01080         156 VAMLMKNTVEAAK  168 (168)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999998763

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=100.00  E-value=4.3e-38  Score=257.94  Aligned_cols=137  Identities=36%  Similarity=0.555  Sum_probs=128.7

Q ss_pred             CCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhhcCCCCEEEeccCCC
Q 024306          111 REPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       111 ~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~aDiVIsAtg~p  190 (269)
                      .++.|+|||++|++++|++|+++++||+|+|+|+|..+|+|++.+|.++|++|++||++|+++++++++|||||+|||++
T Consensus         3 ~~~~~~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~   82 (140)
T cd05212           3 CTPLFVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKP   82 (140)
T ss_pred             CCCcccccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHH
Q 024306          191 NLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA  262 (269)
Q Consensus       191 ~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~  262 (269)
                      ++++.+|+++|++|+|++.++..               ++++.++++++|||||||||+|++|||+|+++++
T Consensus        83 ~~i~~~~ikpGa~Vidvg~~~~~---------------~~~~~~~a~~~tPvpgGVGp~T~a~L~~n~~~~~  139 (140)
T cd05212          83 EKVPTEWIKPGATVINCSPTKLS---------------GDDVKESASLYVPMTGGVGKLTVAMRMQNMVRSV  139 (140)
T ss_pred             CccCHHHcCCCCEEEEcCCCccc---------------chhhHhhceEEcCCCCCchHHHHHHHHHHHHHhc
Confidence            89999999999999999987621               2466788999999999999999999999999875

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=3.3e-34  Score=260.77  Aligned_cols=223  Identities=17%  Similarity=0.166  Sum_probs=182.1

Q ss_pred             EEeCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCC---CCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcC
Q 024306           14 ILVGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADG---CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAV   89 (269)
Q Consensus        14 i~vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~---~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i   89 (269)
                      -.+| +|.+||.++.+++ +|+++|+++.|..|+.+   +++++|.+.++.++. .++.|+|||+|||+.+  .++++.+
T Consensus         9 ~liG-~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~-~~~~G~nVTiP~K~~v--~~~~D~~   84 (284)
T PRK12549          9 GLIG-AGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAER-MGFAGLNITHPCKQAV--IPHLDEL   84 (284)
T ss_pred             EEEC-CCcccccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHh-cCCCEEEECcCCHHHH--HHHhccC
Confidence            3567 7999999999888 99999999999999753   347899999999987 5899999999999855  8888999


Q ss_pred             Cc-ccccccc-ccce-ecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEE
Q 024306           90 SL-EKDVDGF-HPLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSI  165 (269)
Q Consensus        90 ~p-~kdvdg~-~~~n-~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti  165 (269)
                      ++ .+.+.++ |.++ .|++. |+      ++|..|+++.|++...++++|+|+|+|+||+ |++++..|...|+ +|++
T Consensus        85 ~~~A~~iGAvNTv~~~~g~l~-G~------NTD~~G~~~~l~~~~~~~~~k~vlIlGaGGa-araia~aL~~~G~~~I~I  156 (284)
T PRK12549         85 SDDARALGAVNTVVFRDGRRI-GH------NTDWSGFAESFRRGLPDASLERVVQLGAGGA-GAAVAHALLTLGVERLTI  156 (284)
T ss_pred             CHHHHHhCCceEEEecCCEEE-EE------cCCHHHHHHHHHhhccCccCCEEEEECCcHH-HHHHHHHHHHcCCCEEEE
Confidence            88 6665544 2222 34444 55      4567999999998777899999999999998 9999999999997 6999


Q ss_pred             EeCCCC----------------------CHhhhcCCCCEEEeccCC---C--C-cccCCCcCCCcEEEEeeecCCCCCCC
Q 024306          166 VHALTK----------------------NPEQITSEADIVIAAAGV---A--N-LVRGSWLKPGAVVLDVGTCPVDDPSC  217 (269)
Q Consensus       166 ~~~~t~----------------------~l~~~~~~aDiVIsAtg~---p--~-~i~~~~~~~g~vViDv~~~~~~~~~~  217 (269)
                      ++|+..                      ++.+.++++|+||+||+.   +  . +++.++++++.+|+|+.|+|.+|   
T Consensus       157 ~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T---  233 (284)
T PRK12549        157 FDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLET---  233 (284)
T ss_pred             ECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCC---
Confidence            998631                      122356789999999862   2  2 36677899999999999999988   


Q ss_pred             CCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          218 EYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       218 ~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                          +|+      ..+++.|+  ++.+|.+     ||++|++.+||+|+|.
T Consensus       234 ----~ll------~~A~~~G~--~~~~G~~-----ML~~Qa~~~f~~wtg~  267 (284)
T PRK12549        234 ----ELL------RAARALGC--RTLDGGG-----MAVFQAVDAFELFTGR  267 (284)
T ss_pred             ----HHH------HHHHHCCC--eEecCHH-----HHHHHHHHHHHHhcCC
Confidence                688      44788898  4577885     9999999999999995

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=100.00  E-value=8e-34  Score=258.65  Aligned_cols=218  Identities=21%  Similarity=0.223  Sum_probs=178.9

Q ss_pred             EeCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-c
Q 024306           15 LVGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (269)
Q Consensus        15 ~vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~   92 (269)
                      ++| +|.+||.++.+++ +|+++|+++.|..|+.  ++++|.+.++.++. .++.|+|||+|||+.+  .++++.+++ .
T Consensus        12 liG-~Pi~hSlSP~ihn~~f~~~gl~~~Y~~~~v--~~~~l~~~~~~l~~-~~~~G~nVTiP~K~~~--~~~~D~l~~~A   85 (288)
T PRK12749         12 LMA-YPIRHSLSPEMQNKALEKAGLPFTYMAFEV--DNDSFPGAIEGLKA-LKMRGTGVSMPNKQLA--CEYVDELTPAA   85 (288)
T ss_pred             EEC-CCcccccCHHHHHHHHHHcCCCeEEEEEec--CHHHHHHHHHHHHh-cCCCEEEECcCCHHHH--HHHhccCCHHH
Confidence            557 7999999999888 9999999999999965  57899999999987 4899999999999855  888899988 6


Q ss_pred             cccccccccee-----cccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEE
Q 024306           93 KDVDGFHPLNI-----GNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIV  166 (269)
Q Consensus        93 kdvdg~~~~n~-----g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~  166 (269)
                      +.+.+   +|+     |++. |+      ++|..|+++.|++.+.++++|+++|+|+||+ +|+++..|+.+|+ +|+|+
T Consensus        86 ~~iGA---VNTv~~~~g~l~-G~------NTD~~Gf~~~l~~~~~~~~~k~vlvlGaGGa-arAi~~~l~~~g~~~i~i~  154 (288)
T PRK12749         86 KLVGA---INTIVNDDGYLR-GY------NTDGTGHIRAIKESGFDIKGKTMVLLGAGGA-STAIGAQGAIEGLKEIKLF  154 (288)
T ss_pred             HHhCc---eeEEEccCCEEE-EE------ecCHHHHHHHHHhcCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEE
Confidence            66554   553     4443 54      5577999999999999999999999999999 9999999999997 69999


Q ss_pred             eCCCC------CH-----------------------hhhcCCCCEEEeccCC---CC----c-ccCCCcCCCcEEEEeee
Q 024306          167 HALTK------NP-----------------------EQITSEADIVIAAAGV---AN----L-VRGSWLKPGAVVLDVGT  209 (269)
Q Consensus       167 ~~~t~------~l-----------------------~~~~~~aDiVIsAtg~---p~----~-i~~~~~~~g~vViDv~~  209 (269)
                      +|+..      ++                       .+.+.++|+|||+|+.   |+    + ++.+.++++.+|+|+.|
T Consensus       155 nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY  234 (288)
T PRK12749        155 NRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVY  234 (288)
T ss_pred             eCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCCCEEEEecC
Confidence            99731      00                       1134568999999973   32    2 24456788999999999


Q ss_pred             cCCCCCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024306          210 CPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  269 (269)
Q Consensus       210 ~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~~  269 (269)
                      +|.+|       +|+      ..+++.|+  ++.+|.+     ||++|++++||+|+|.+
T Consensus       235 ~P~~T-------~ll------~~A~~~G~--~~~~Gl~-----ML~~Qa~~~f~lwtg~~  274 (288)
T PRK12749        235 NPHMT-------KLL------QQAQQAGC--KTIDGYG-----MLLWQGAEQFTLWTGKD  274 (288)
T ss_pred             CCccC-------HHH------HHHHHCCC--eEECCHH-----HHHHHHHHHHHHhcCCC
Confidence            99988       788      44788898  4477785     99999999999999963

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-33  Score=255.97  Aligned_cols=220  Identities=22%  Similarity=0.277  Sum_probs=179.5

Q ss_pred             EeCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-c
Q 024306           15 LVGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (269)
Q Consensus        15 ~vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~   92 (269)
                      .+| +|.+||.++.+++ +|+++|+++.|..|+.  ++++|.+.++.++. .++.|+|||+|||+.+  .++++.++| .
T Consensus        14 liG-~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v--~~~~l~~~~~~~~~-~~~~G~nVT~P~K~~v--~~~ld~~~~~A   87 (289)
T PRK12548         14 LIG-SPVGHSGSPAMYNYSFQKAGLDYAYLAFDI--PVDKVPDAIKAIKT-FNMRGANVTMPCKSEA--AKYMDELSPAA   87 (289)
T ss_pred             EEc-CCcccccCHHHHHHHHHHcCCCEEEEEEec--CHHHHHHHHHHHHH-CCCCEEEECccCHHHH--HHHhhcCCHHH
Confidence            557 7999999999988 9999999999999965  57899999999987 5899999999999855  888999988 5


Q ss_pred             cccccc-ccce-ecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCC
Q 024306           93 KDVDGF-HPLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL  169 (269)
Q Consensus        93 kdvdg~-~~~n-~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~  169 (269)
                      +.+.++ |.++ .|++. |+|      +|..|+++.|++++.++++|+++|+|+||+ |++++..|+..|++ |++++|+
T Consensus        88 ~~iGavNTi~~~~g~l~-G~N------TD~~G~~~~l~~~~~~~~~k~vlI~GAGGa-grAia~~La~~G~~~V~I~~R~  159 (289)
T PRK12548         88 RIIGAVNTIVNDDGKLT-GHI------TDGLGFVRNLREHGVDVKGKKLTVIGAGGA-ATAIQVQCALDGAKEITIFNIK  159 (289)
T ss_pred             HHhCceeEEEeECCEEE-EEe------cCHHHHHHHHHhcCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCC
Confidence            555443 1222 34554 554      466999999998888899999999999998 99999999999985 9999986


Q ss_pred             C---CC---------------------------HhhhcCCCCEEEeccCC---CC----cc-cCCCcCCCcEEEEeeecC
Q 024306          170 T---KN---------------------------PEQITSEADIVIAAAGV---AN----LV-RGSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       170 t---~~---------------------------l~~~~~~aDiVIsAtg~---p~----~i-~~~~~~~g~vViDv~~~~  211 (269)
                      .   ..                           +.+.+..+|+||++|+.   |+    ++ +.++++++.+|+|+.|+|
T Consensus       160 ~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P  239 (289)
T PRK12548        160 DDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNP  239 (289)
T ss_pred             chHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCC
Confidence            3   10                           11233567999999972   32    24 456788999999999999


Q ss_pred             CCCCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          212 VDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       212 ~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                      .+|       +|+      ..+++.|+  ++.+|++     ||++|++++||+|+|.
T Consensus       240 ~~T-------~ll------~~A~~~G~--~~~~G~~-----ML~~Qa~~~f~lwtg~  276 (289)
T PRK12548        240 KKT-------KLL------EDAEAAGC--KTVGGLG-----MLLWQGAEAYKLYTGK  276 (289)
T ss_pred             CCC-------HHH------HHHHHCCC--eeeCcHH-----HHHHHHHHHHHHhcCC
Confidence            988       788      45888898  5688885     9999999999999996

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-33  Score=257.04  Aligned_cols=223  Identities=17%  Similarity=0.182  Sum_probs=179.9

Q ss_pred             EeCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCC---CCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCC
Q 024306           15 LVGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADG---CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVS   90 (269)
Q Consensus        15 ~vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~---~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~   90 (269)
                      .+| +|.+||.++.+++ +|+++|+++.|..|+..   +++++|.+.++.++. .++.|+|||+|||+.+  .++++.++
T Consensus         9 liG-~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~-~~~~G~nVT~P~K~~~--~~~lD~l~   84 (283)
T PRK14027          9 LIG-QGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALY-LGFNGLNITHPYKQAV--LPLLDEVS   84 (283)
T ss_pred             EEC-CCccccCCHHHHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHh-cCCCEEEECccCHHHH--HHHhhhCC
Confidence            456 7999999999988 89999999999999754   346889999999988 5899999999999854  88999999


Q ss_pred             c-cccccccc-cce--ecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEE
Q 024306           91 L-EKDVDGFH-PLN--IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSI  165 (269)
Q Consensus        91 p-~kdvdg~~-~~n--~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti  165 (269)
                      | .+.+.+++ .++  .|++. |+||      |..|+++.|++...++++|+++|+|+||+ ||+++..|.+.|+ +|+|
T Consensus        85 ~~A~~iGAVNTv~~~~~g~l~-G~NT------D~~Gf~~~L~~~~~~~~~k~vlilGaGGa-arAi~~aL~~~g~~~i~i  156 (283)
T PRK14027         85 EQATQLGAVNTVVIDATGHTT-GHNT------DVSGFGRGMEEGLPNAKLDSVVQVGAGGV-GNAVAYALVTHGVQKLQV  156 (283)
T ss_pred             HHHHHhCCceEEEECCCCcEE-EEcC------CHHHHHHHHHhcCcCcCCCeEEEECCcHH-HHHHHHHHHHCCCCEEEE
Confidence            9 66665542 222  34444 5544      66999999987666789999999999998 9999999999997 6999


Q ss_pred             EeCCCC---CH---------------------hhhcCCCCEEEeccCC---CC---cccCCCcCCCcEEEEeeecCCCCC
Q 024306          166 VHALTK---NP---------------------EQITSEADIVIAAAGV---AN---LVRGSWLKPGAVVLDVGTCPVDDP  215 (269)
Q Consensus       166 ~~~~t~---~l---------------------~~~~~~aDiVIsAtg~---p~---~i~~~~~~~g~vViDv~~~~~~~~  215 (269)
                      ++|+..   .+                     .+.+..+|+|||+|+.   ++   +++.+.++++.+|+|+.|+|.+| 
T Consensus       157 ~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~~~~~~~~~~~~l~~~~~v~D~vY~P~~T-  235 (283)
T PRK14027        157 ADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIET-  235 (283)
T ss_pred             EcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCCCCCCCCCCHHHcCCCcEEEEcccCCCCC-
Confidence            998631   11                     1234568999999973   22   35566788899999999999988 


Q ss_pred             CCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024306          216 SCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  269 (269)
Q Consensus       216 ~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~~  269 (269)
                            +|+      ..+++.|+  ++-+|.+     ||++|++++||+|+|.+
T Consensus       236 ------~ll------~~A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lw~G~~  270 (283)
T PRK14027        236 ------ELL------KAARALGC--ETLDGTR-----MAIHQAVDAFRLFTGLE  270 (283)
T ss_pred             ------HHH------HHHHHCCC--EEEccHH-----HHHHHHHHHHHHHhCCC
Confidence                  788      44888898  4577885     99999999999999963

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-33  Score=255.65  Aligned_cols=220  Identities=21%  Similarity=0.323  Sum_probs=180.1

Q ss_pred             EeCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-c
Q 024306           15 LVGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (269)
Q Consensus        15 ~vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~   92 (269)
                      .+| +|.+||.++.+++ +|+++|+++.|..|..  .+++|.++++.+.+ +++.|+|||+|||+.+  .+++|.+++ +
T Consensus        11 viG-~Pi~HS~SP~~Hn~~~~~lGl~~~Y~a~~v--~~~~l~~~v~~~~~-~g~~G~NVTiP~Ke~~--~~~lD~l~~~A   84 (283)
T COG0169          11 VIG-NPISHSLSPRMHNAAFRALGLDYVYLAFEV--PPEDLPEAVSGIRA-LGFRGLNVTIPFKEAA--LPLLDELSPRA   84 (283)
T ss_pred             EEc-CCcccCcCHHHHHHHHHHcCCCceEEEeec--CHHHHHHHHHHHHh-cCCCeeEECCccHHHH--HHHHhcCCHHH
Confidence            345 8899999999888 9999999999999966  58999999999996 7999999999999955  889999999 5


Q ss_pred             cccccc-cccee--cccccCCCCCccccCCHHHHHHHHHHhC--CCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEE
Q 024306           93 KDVDGF-HPLNI--GNLAMRGREPLFIPCTPKGCIELLIRSG--VEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIV  166 (269)
Q Consensus        93 kdvdg~-~~~n~--g~l~~g~~~~~~~p~t~~g~~~~l~~~~--~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~  166 (269)
                      +.+.++ |.++.  |++. ||||      |+.|+++.|++++  .+.+|++|+|+|+||+ +|+++..|++.|+ +|+|+
T Consensus        85 ~~iGAVNTl~~~~~g~l~-G~NT------D~~G~~~~L~~~~~~~~~~~~~vlilGAGGA-arAv~~aL~~~g~~~i~V~  156 (283)
T COG0169          85 RLIGAVNTLVREDDGKLR-GYNT------DGIGFLRALKEFGLPVDVTGKRVLILGAGGA-ARAVAFALAEAGAKRITVV  156 (283)
T ss_pred             HHhCCceEEEEccCCEEE-EEcC------CHHHHHHHHHhcCCCcccCCCEEEEECCcHH-HHHHHHHHHHcCCCEEEEE
Confidence            555444 33333  5555 6655      6699999999987  5667999999999999 9999999999996 79999


Q ss_pred             eCCCCC---Hh------------------hhcCCCCEEEeccCC---CC----cccCCCcCCCcEEEEeeecCCCCCCCC
Q 024306          167 HALTKN---PE------------------QITSEADIVIAAAGV---AN----LVRGSWLKPGAVVLDVGTCPVDDPSCE  218 (269)
Q Consensus       167 ~~~t~~---l~------------------~~~~~aDiVIsAtg~---p~----~i~~~~~~~g~vViDv~~~~~~~~~~~  218 (269)
                      ||+...   +.                  +...++|+|||||+.   ++    +++.+.++++.+|+|+.|+|.+|    
T Consensus       157 NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T----  232 (283)
T COG0169         157 NRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYNPLET----  232 (283)
T ss_pred             eCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEeccCCCCC----
Confidence            997411   10                  111158999999983   22    35567899999999999999999    


Q ss_pred             CCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          219 YGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       219 ~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                         +|+      +.+++.|+.|  ..|.|     ||++|++++|++|+|.
T Consensus       233 ---plL------~~A~~~G~~~--idGl~-----Mlv~Qaa~aF~lwtg~  266 (283)
T COG0169         233 ---PLL------REARAQGAKT--IDGLG-----MLVHQAAEAFELWTGV  266 (283)
T ss_pred             ---HHH------HHHHHcCCeE--ECcHH-----HHHHHHHHHHHHHhCC
Confidence               688      4478888763  66775     9999999999999986

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=100.00  E-value=5.1e-33  Score=252.75  Aligned_cols=223  Identities=16%  Similarity=0.202  Sum_probs=176.9

Q ss_pred             EEEEeCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCC
Q 024306           12 AVILVGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVS   90 (269)
Q Consensus        12 ~~i~vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~   90 (269)
                      ..-.+| +|.+||.++.+++ +|+++|+++.|..|+.. ++++|.+.++.+..  ++.|+|||+|||+.+  .++++.++
T Consensus         7 ~~~liG-~Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~-~~~~l~~~~~~~~~--~~~G~nVT~P~K~~~--~~~~d~~~   80 (282)
T TIGR01809         7 KAFIIG-KPIAHSRSPHLHNAGYEILGLPDKTYEFETC-SAEELKEVLSGFGP--QFGGASVTIPLKFAI--LRFADEHT   80 (282)
T ss_pred             EEEEEc-CCchhccCHHHHHHHHHHcCCCcEEEeeecC-CHHHHHHHHHhcCC--CCcEEEECCCCHHHH--HHHhhcCC
Confidence            345678 7999999999999 99999999999999753 36889999999843  799999999999855  88899999


Q ss_pred             c-ccccccc-ccce--ecccccCCCCCccccCCHHHHHHHHHHhCC--CCccceEEEEcCCcccHHHHHHHHHhCCC-EE
Q 024306           91 L-EKDVDGF-HPLN--IGNLAMRGREPLFIPCTPKGCIELLIRSGV--EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TV  163 (269)
Q Consensus        91 p-~kdvdg~-~~~n--~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~--~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~V  163 (269)
                      + .+.+.++ |.++  .|++. |+      ++|..|+++.|++.+.  +++||+|+|||+||+ ||+++..|.+.|+ +|
T Consensus        81 ~~A~~iGAVNTv~~~~~g~l~-G~------NTD~~G~~~~l~~~~~~~~~~~k~vlvlGaGGa-arai~~aL~~~G~~~i  152 (282)
T TIGR01809        81 DRASLIGSVNTLLRTQNGIWK-GD------NTDWDGIAGALANIGKFEPLAGFRGLVIGAGGT-SRAAVYALASLGVTDI  152 (282)
T ss_pred             HHHHHhCceeEEEEcCCCcEE-Ee------cCCHHHHHHHHHhhCCccccCCceEEEEcCcHH-HHHHHHHHHHcCCCeE
Confidence            8 6555544 2222  23443 55      4567999999998773  689999999999998 9999999999997 69


Q ss_pred             EEEeCCCC----------------------CHhhhcCCCCEEEeccCCCCcccCCC------------cCCCcEEEEeee
Q 024306          164 SIVHALTK----------------------NPEQITSEADIVIAAAGVANLVRGSW------------LKPGAVVLDVGT  209 (269)
Q Consensus       164 ti~~~~t~----------------------~l~~~~~~aDiVIsAtg~p~~i~~~~------------~~~g~vViDv~~  209 (269)
                      +|++|+..                      ++...+.++|+|||+|+...+++.+.            ++++.+|+|+.|
T Consensus       153 ~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~~~~~~~~~~~~v~D~vY  232 (282)
T TIGR01809       153 TVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKRKSSEGIFLDAAY  232 (282)
T ss_pred             EEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhhhccccCCCCcEEEEEee
Confidence            99998621                      11233567899999999644333322            346789999999


Q ss_pred             cCCCCCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          210 CPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       210 ~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                      +|.+|       +|+      ..++++|+  ++.+|.+     ||++|++.+|+.|+|.
T Consensus       233 ~P~~T-------~ll------~~A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lwtg~  271 (282)
T TIGR01809       233 DPWPT-------PLV------AIVSAAGW--RVISGLQ-----MLLHQGFAQFEQWTGM  271 (282)
T ss_pred             CCCCC-------HHH------HHHHHCCC--EEECcHH-----HHHHHHHHHHHHHHCC
Confidence            99988       688      45788888  4577885     9999999999999986

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=6.8e-33  Score=250.56  Aligned_cols=230  Identities=17%  Similarity=0.196  Sum_probs=179.3

Q ss_pred             CCCCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCC
Q 024306            1 MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHL   80 (269)
Q Consensus         1 ~~~~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~   80 (269)
                      |....+..++|..=++| +|.|+|-+ .++.+|+++|+++.|..|+    +++|.+.++.++. .++.|+|||+|||+.+
T Consensus         1 ~~~~~~~~~~~~~gliG-~P~~~Sp~-ihn~~f~~~gl~~~Y~~~~----~~~l~~~~~~l~~-~~~~G~nVT~P~K~~~   73 (272)
T PRK12550          1 MTNMINKDTQLCISLAA-RPSNFGTR-FHNYLYEALGLNFLYKAFT----TTDLTAAIGGVRA-LGIRGCAVSMPFKEAV   73 (272)
T ss_pred             CCCcCCCCceEEEEEEc-cchhcCHH-HHHHHHHHcCCCcEEEecC----HhHHHHHHHHHHh-cCCCEEEECcCCHHHH
Confidence            45566667787666778 55665555 5555999999999999995    4689999999987 5899999999999855


Q ss_pred             CHHHHHhcCCc-ccccccc-ccce-ecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHH
Q 024306           81 DEGKILDAVSL-EKDVDGF-HPLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ  157 (269)
Q Consensus        81 ~~~~i~~~i~p-~kdvdg~-~~~n-~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~  157 (269)
                        .++++.++| .+.+.++ |.++ .|++. |+      ++|..|+++.|++.+.+ .+++++|+|+||+ +|+++..|.
T Consensus        74 --~~~lD~l~~~A~~iGAVNTi~~~~g~l~-G~------NTD~~Gf~~~L~~~~~~-~~~~vlilGaGGa-arAi~~aL~  142 (272)
T PRK12550         74 --IPLVDELDPSAQAIESVNTIVNTDGHLK-AY------NTDYIAIAKLLASYQVP-PDLVVALRGSGGM-AKAVAAALR  142 (272)
T ss_pred             --HHHhhcCCHHHHHhCCeeEEEeeCCEEE-EE------ecCHHHHHHHHHhcCCC-CCCeEEEECCcHH-HHHHHHHHH
Confidence              889999999 5555543 2222 33443 54      55779999999988775 4679999999999 999999999


Q ss_pred             hCCC-EEEEEeCCCCC---Hh--------hhc--CCCCEEEeccCC---CC------cccCCCcCCCcEEEEeeecCCCC
Q 024306          158 RHHA-TVSIVHALTKN---PE--------QIT--SEADIVIAAAGV---AN------LVRGSWLKPGAVVLDVGTCPVDD  214 (269)
Q Consensus       158 ~~ga-~Vti~~~~t~~---l~--------~~~--~~aDiVIsAtg~---p~------~i~~~~~~~g~vViDv~~~~~~~  214 (269)
                      +.|+ +|+|++|+.+.   +.        +.+  ..+|+|||||+.   ++      .++.++++++.+|+|+.|+|.+|
T Consensus       143 ~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~~T  222 (272)
T PRK12550        143 DAGFTDGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPAET  222 (272)
T ss_pred             HCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCccC
Confidence            9997 59999997421   11        111  458999999972   21      36677899999999999999988


Q ss_pred             CCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          215 PSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       215 ~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                             +|+      ..+++.|+  ++.+|.+     ||++|++++||+|+|.
T Consensus       223 -------~ll------~~A~~~G~--~~i~Gl~-----MLi~Qa~~~f~lwtg~  256 (272)
T PRK12550        223 -------PLI------RYARARGK--TVITGAE-----VIALQAVEQFVLYTGV  256 (272)
T ss_pred             -------HHH------HHHHHCcC--eEeCCHH-----HHHHHHHHHHHHHhCC
Confidence                   688      44788898  4578885     9999999999999996

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=1.5e-32  Score=249.12  Aligned_cols=220  Identities=17%  Similarity=0.260  Sum_probs=180.1

Q ss_pred             EeCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-c
Q 024306           15 LVGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (269)
Q Consensus        15 ~vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~   92 (269)
                      .+| +|.+||.++.+++ +|+++|+++.|..|+.  ++++|.+.++.++. .++.|+|||+|||+.+  .++++.++| .
T Consensus        10 viG-~pi~hS~SP~~hn~~~~~~gl~~~y~~~~v--~~~~l~~~~~~~~~-~~~~G~nVT~P~K~~~--~~~~d~~~~~A   83 (278)
T PRK00258         10 VIG-NPIAHSKSPLIHNAAFKQLGLDGVYLAILV--PPEDLEDAVKGFFA-LGGRGANVTVPFKEAA--FALADELSERA   83 (278)
T ss_pred             EEC-CchhcccCHHHHHHHHHHcCCCcEEEEEec--CHHHHHHHHHHHHh-CCCCEEEECcCCHHHH--HHHhhcCCHHH
Confidence            457 8999999999888 9999999999999965  57899999999988 4899999999999855  889999999 6


Q ss_pred             ccccccc-cce-ecccccCCCCCccccCCHHHHHHHHHH-hCCCCccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeC
Q 024306           93 KDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHA  168 (269)
Q Consensus        93 kdvdg~~-~~n-~g~l~~g~~~~~~~p~t~~g~~~~l~~-~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~  168 (269)
                      +.+.+++ .++ .|++. |+      ++|+.|+++.|++ .+.++++|+|+|+|+||+ |+++++.|..+| ++|++++|
T Consensus        84 ~~igavNtv~~~~g~l~-G~------NTD~~G~~~~l~~~~~~~~~~k~vlVlGaGg~-a~ai~~aL~~~g~~~V~v~~R  155 (278)
T PRK00258         84 RLIGAVNTLVLEDGRLI-GD------NTDGIGFVRALEERLGVDLKGKRILILGAGGA-ARAVILPLLDLGVAEITIVNR  155 (278)
T ss_pred             HHhCCceEEEeeCCEEE-EE------cccHHHHHHHHHhccCCCCCCCEEEEEcCcHH-HHHHHHHHHHcCCCEEEEEeC
Confidence            6655442 222 33443 54      4577999999986 577899999999999997 999999999999 68999998


Q ss_pred             CCCC-------------------HhhhcCCCCEEEeccCCC---C----cccCCCcCCCcEEEEeeecCCCCCCCCCCce
Q 024306          169 LTKN-------------------PEQITSEADIVIAAAGVA---N----LVRGSWLKPGAVVLDVGTCPVDDPSCEYGYR  222 (269)
Q Consensus       169 ~t~~-------------------l~~~~~~aDiVIsAtg~p---~----~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~  222 (269)
                      +...                   +.+.+.++|+|||+|+..   +    .++.++++++.+|+|+.|+|.+|       +
T Consensus       156 ~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T-------~  228 (278)
T PRK00258        156 TVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPT-------P  228 (278)
T ss_pred             CHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCC-------H
Confidence            7321                   123457799999999842   1    35567789999999999999888       6


Q ss_pred             eecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          223 LMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       223 l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                      |+      ..+++.|+  ++.+|.+     ||++|++.+|++|+|.
T Consensus       229 ll------~~A~~~G~--~~~~G~~-----Ml~~Qa~~~f~~wtg~  261 (278)
T PRK00258        229 FL------AWAKAQGA--RTIDGLG-----MLVHQAAEAFELWTGV  261 (278)
T ss_pred             HH------HHHHHCcC--eecCCHH-----HHHHHHHHHHHHHcCC
Confidence            77      44888898  5678885     9999999999999995

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=99.97  E-value=2.3e-31  Score=240.29  Aligned_cols=220  Identities=19%  Similarity=0.201  Sum_probs=177.2

Q ss_pred             EeCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-c
Q 024306           15 LVGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (269)
Q Consensus        15 ~vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~   92 (269)
                      .+| +|.+||.++.+++ +|+++|+++.|..|+.  ++++|.+.++.++. .++.|+|||+|||+.+  .++++.+++ .
T Consensus         5 viG-~pi~hS~SP~~hn~~~~~~g~~~~y~~~~v--~~~~l~~~~~~~~~-~~~~G~nVT~P~K~~~--~~~~d~~~~~A   78 (270)
T TIGR00507         5 VIG-NPIAHSKSPLIHNAFFKQLGLEGPYIAFLV--PPDDLEDALSGFFA-LGFKGANVTSPFKEEA--FQFLDEIDERA   78 (270)
T ss_pred             EEC-CccccccCHHHHHHHHHHcCCCcEEEEEec--CHHHHHHHHHHHHh-cCCCEEEECcCCHHHH--HHHhhhCCHHH
Confidence            345 7999999999888 9999999999999965  57899999999988 4899999999999844  889999999 5


Q ss_pred             ccccccc-cce-ecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306           93 KDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus        93 kdvdg~~-~~n-~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +.+.+++ .++ .|++. |+      ++|..|+++.|++.+...++|+++|+|+|++ |++++..|.+.|++|++++|+.
T Consensus        79 ~~~gavNti~~~~g~l~-g~------NTD~~G~~~~l~~~~~~~~~k~vliiGaGg~-g~aia~~L~~~g~~v~v~~R~~  150 (270)
T TIGR00507        79 KLAGAVNTLKLEDGKLV-GY------NTDGIGLVSDLERLIPLRPNQRVLIIGAGGA-ARAVALPLLKADCNVIIANRTV  150 (270)
T ss_pred             HHhCCceEEEeeCCEEE-EE------cCCHHHHHHHHHhcCCCccCCEEEEEcCcHH-HHHHHHHHHHCCCEEEEEeCCH
Confidence            6655442 112 33443 54      5577999999998777778999999999987 9999999999999999998863


Q ss_pred             CCH------------------h-hhcCCCCEEEeccCC---CC----cccCCCcCCCcEEEEeeecCCCCCCCCCCceee
Q 024306          171 KNP------------------E-QITSEADIVIAAAGV---AN----LVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLM  224 (269)
Q Consensus       171 ~~l------------------~-~~~~~aDiVIsAtg~---p~----~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~  224 (269)
                      ...                  . ....++|+||++|+.   +.    .++.++++++.+|+|+.|+|.+|       +|+
T Consensus       151 ~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T-------~ll  223 (270)
T TIGR00507       151 SKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGET-------PFL  223 (270)
T ss_pred             HHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCC-------HHH
Confidence            211                  1 122578999999984   22    24456789999999999999877       566


Q ss_pred             cccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          225 GDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       225 GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                            ..+++.|+  ++.+|.+     ||++|++.+||+|+|.
T Consensus       224 ------~~A~~~G~--~~vdG~~-----Ml~~Qa~~~f~~w~g~  254 (270)
T TIGR00507       224 ------AEAKSLGT--KTIDGLG-----MLVAQAALAFELWTGV  254 (270)
T ss_pred             ------HHHHHCCC--eeeCCHH-----HHHHHHHHHHHHHcCC
Confidence                  44788887  4577885     9999999999999985

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=99.96  E-value=1.7e-29  Score=247.36  Aligned_cols=219  Identities=20%  Similarity=0.263  Sum_probs=175.8

Q ss_pred             EeCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-c
Q 024306           15 LVGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (269)
Q Consensus        15 ~vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~   92 (269)
                      .+| +|.+||.++.+++ +|+++|+++.|..|+.    ++|.+.++.++. +++.|+|||+|||+.+  .++++.++| +
T Consensus       257 liG-~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v----~~l~~~~~~l~~-~~~~G~nVTiP~K~~v--~~~lD~~~~~A  328 (529)
T PLN02520        257 IIG-KPVGHSKSPILHNEAFKSVGFNGVYVHLLV----DDLAKFLQTYSS-PDFAGFSCTIPHKEDA--LKCCDEVDPIA  328 (529)
T ss_pred             EEc-CCcccccCHHHHHHHHHHCCCCcEEEEeeh----hhHHHHHHHHhh-CCCCEEEECcCCHHHH--HHHhccCCHHH
Confidence            567 7999999999888 9999999999999965    468888888877 6899999999999855  889999999 6


Q ss_pred             ccccccc-cce---ecccccCCCCCccccCCHHHHHHHHHHh----------CCCCccceEEEEcCCcccHHHHHHHHHh
Q 024306           93 KDVDGFH-PLN---IGNLAMRGREPLFIPCTPKGCIELLIRS----------GVEIMGKNAVVIGRSNIVGLPTSLLLQR  158 (269)
Q Consensus        93 kdvdg~~-~~n---~g~l~~g~~~~~~~p~t~~g~~~~l~~~----------~~~l~gk~v~ViG~gg~vg~~~a~~L~~  158 (269)
                      +.+.+++ .++   .|++. |+|      +|..|+++.|++.          +.++++|+++|+|+||+ |+++++.|++
T Consensus       329 ~~iGAVNTvv~~~~~g~l~-G~N------TD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGa-grAia~~L~~  400 (529)
T PLN02520        329 KSIGAINTIIRRPSDGKLV-GYN------TDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGA-GKALAYGAKE  400 (529)
T ss_pred             HHhCCceEEEEeCCCCEEE-EEc------ccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHH-HHHHHHHHHH
Confidence            6665542 222   24444 554      4679999999752          45789999999999998 9999999999


Q ss_pred             CCCEEEEEeCCCCC---H--------------hh-hcCCCCEEEeccCC---CC----cccCCCcCCCcEEEEeeecCCC
Q 024306          159 HHATVSIVHALTKN---P--------------EQ-ITSEADIVIAAAGV---AN----LVRGSWLKPGAVVLDVGTCPVD  213 (269)
Q Consensus       159 ~ga~Vti~~~~t~~---l--------------~~-~~~~aDiVIsAtg~---p~----~i~~~~~~~g~vViDv~~~~~~  213 (269)
                      +|++|++++|+.+.   +              .+ ....+|+||++|+.   |+    +++.+++++..+|+|+.|+|.+
T Consensus       401 ~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~vY~P~~  480 (529)
T PLN02520        401 KGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPKI  480 (529)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEeccCCCc
Confidence            99999999886321   1              11 11357899988872   32    3666788999999999999998


Q ss_pred             CCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024306          214 DPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  269 (269)
Q Consensus       214 ~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~~  269 (269)
                      |       +|+      ..++++|+  ++.+|.     .||++|++.+|++|+|.+
T Consensus       481 T-------~ll------~~A~~~G~--~~~~Gl-----~MLv~Qa~~~f~lwtg~~  516 (529)
T PLN02520        481 T-------RLL------REAEESGA--IIVSGT-----EMFIRQAYEQFERFTGLP  516 (529)
T ss_pred             C-------HHH------HHHHHCCC--eEeCcH-----HHHHHHHHHHHHHHhCCC
Confidence            8       688      44788898  457788     499999999999999963

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=99.96  E-value=2.3e-28  Score=236.84  Aligned_cols=217  Identities=15%  Similarity=0.180  Sum_probs=174.4

Q ss_pred             EeCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-c
Q 024306           15 LVGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (269)
Q Consensus        15 ~vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~   92 (269)
                      .+| +|.+||.++.+++ +|+++|+++.|..|+.  +++++.+.++.++. +++.|+|||+|||+.+  .++++.++| +
T Consensus       220 liG-~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v--~~~~l~~~~~~~~~-~~~~G~nVT~P~K~~v--~~~~d~~~~~A  293 (477)
T PRK09310        220 LIG-DPVDRSISHLSHNPLFSQLSLNCPYIKLPL--TPQELPKFFSTIRD-LPFLGLSVTMPLKTAV--LDFLDKLDPSV  293 (477)
T ss_pred             EEC-CCcccccCHHHHHHHHHHcCCCcEEEEeec--CHHHHHHHHHHHHh-CCCCEEEECccCHHHH--HHHhccCCHHH
Confidence            556 7999999999888 9999999999999965  57889999999987 5899999999999854  888999999 6


Q ss_pred             ccccccc-cce-ecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306           93 KDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus        93 kdvdg~~-~~n-~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +.+.+++ .++ .|++. |+|      +|..|+++.|++.+.++++++++|+|+|++ |++++..|.+.|++|++++|+.
T Consensus       294 ~~iGAVNTv~~~~g~l~-G~N------TD~~G~~~~l~~~~~~~~~k~vlIiGaGgi-G~aia~~L~~~G~~V~i~~R~~  365 (477)
T PRK09310        294 KLCGSCNTLVFRNGKIE-GYN------TDGEGLFSLLKQKNIPLNNQHVAIVGAGGA-AKAIATTLARAGAELLIFNRTK  365 (477)
T ss_pred             HHhCcceEEEeeCCEEE-EEe------cCHHHHHHHHHhcCCCcCCCEEEEEcCcHH-HHHHHHHHHHCCCEEEEEeCCH
Confidence            6655542 222 34554 554      466999999999999999999999999987 9999999999999999998863


Q ss_pred             CCH--------------h--hhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhh
Q 024306          171 KNP--------------E--QITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMR  234 (269)
Q Consensus       171 ~~l--------------~--~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~  234 (269)
                      ...              .  ..+.++|+||++|+..-.+.. .+.  .+|+|+.|+|.+|       .|+      ..++
T Consensus       366 ~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~~~~-~l~--~~v~D~~Y~P~~T-------~ll------~~A~  429 (477)
T PRK09310        366 AHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVTIPK-AFP--PCVVDINTLPKHS-------PYT------QYAR  429 (477)
T ss_pred             HHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCcchh-HHh--hhEEeccCCCCCC-------HHH------HHHH
Confidence            211              1  114678999999985333432 333  3899999999888       566      4477


Q ss_pred             HcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          235 LASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       235 ~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                      +.|+  ++.+|.+     ||++|++.+|++|+|.
T Consensus       430 ~~G~--~~~~G~~-----Ml~~Qa~~~f~lw~g~  456 (477)
T PRK09310        430 SQGS--SIIYGYE-----MFAEQALLQFRLWFPT  456 (477)
T ss_pred             HCcC--EEECcHH-----HHHHHHHHHHHHHcCC
Confidence            8888  4577885     9999999999999996

>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=99.93  E-value=4.2e-26  Score=181.86  Aligned_cols=91  Identities=51%  Similarity=0.820  Sum_probs=80.2

Q ss_pred             CCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHH
Q 024306            6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKI   85 (269)
Q Consensus         6 ~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i   85 (269)
                      |++|+|++|++|+||+|.+|++++.++|+++||+++.+.||++++++++.+.|++||+|++||||+||+|||+|+++.++
T Consensus        27 ~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlvq~PLP~~i~~~~i  106 (117)
T PF00763_consen   27 GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPSVHGILVQLPLPKHIDERKI  106 (117)
T ss_dssp             T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEEESSSSTTSHHHHH
T ss_pred             CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCccHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCcccccc
Q 024306           86 LDAVSLEKDVD   96 (269)
Q Consensus        86 ~~~i~p~kdvd   96 (269)
                      +++|+|.||||
T Consensus       107 ~~~I~p~KDVD  117 (117)
T PF00763_consen  107 LEAIDPEKDVD  117 (117)
T ss_dssp             HHTS-GGGBTT
T ss_pred             HhccCcccCCC
Confidence            99999999997

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.61  E-value=2.5e-15  Score=137.68  Aligned_cols=130  Identities=22%  Similarity=0.362  Sum_probs=104.1

Q ss_pred             CHHH-HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------------CHhhhcCCCC
Q 024306          119 TPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------NPEQITSEAD  181 (269)
Q Consensus       119 t~~g-~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------~l~~~~~~aD  181 (269)
                      ++++ +...+++++.++.|++|+|+|+|++ |++++..|..+|++|++++|+..                ++.+.++++|
T Consensus       134 ~aegav~~a~~~~~~~l~g~kvlViG~G~i-G~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aD  212 (296)
T PRK08306        134 TAEGAIMMAIEHTPITIHGSNVLVLGFGRT-GMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKID  212 (296)
T ss_pred             HHHHHHHHHHHhCCCCCCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCC
Confidence            4455 5566777889999999999999996 99999999999999999998742                3456789999


Q ss_pred             EEEeccCCCCcccCCC---cCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhH---cceecccCCcccHHHHHHHH
Q 024306          182 IVIAAAGVANLVRGSW---LKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRL---ASVITPVPGGVGPMTVAMLL  255 (269)
Q Consensus       182 iVIsAtg~p~~i~~~~---~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~---~~~~tpvpgGvGp~T~~mLl  255 (269)
                      +||++++.+ .++.++   ++++.+|||++++|             |++||+.+.+.   ..+.++.||+|+|+|.+.|+
T Consensus       213 iVI~t~p~~-~i~~~~l~~~~~g~vIIDla~~p-------------ggtd~~~a~~~Gv~~~~~~~lpg~vap~ta~~~~  278 (296)
T PRK08306        213 IIFNTIPAL-VLTKEVLSKMPPEALIIDLASKP-------------GGTDFEYAEKRGIKALLAPGLPGKVAPKTAGQIL  278 (296)
T ss_pred             EEEECCChh-hhhHHHHHcCCCCcEEEEEccCC-------------CCcCeeehhhCCeEEEEECCCCccCCHHHHHHHH
Confidence            999998643 455554   68899999999987             55676443332   44458889999999999999


Q ss_pred             HHHHHHHH
Q 024306          256 SNTLDSAK  263 (269)
Q Consensus       256 ~n~v~a~~  263 (269)
                      .|.+..+-
T Consensus       279 ~~~i~~~l  286 (296)
T PRK08306        279 ANVLSQLL  286 (296)
T ss_pred             HHHHHHHH
Confidence            99987764

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.57  E-value=1.4e-14  Score=132.23  Aligned_cols=129  Identities=26%  Similarity=0.373  Sum_probs=102.2

Q ss_pred             CCHHHHH-HHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------------CHhhhcCCC
Q 024306          118 CTPKGCI-ELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------NPEQITSEA  180 (269)
Q Consensus       118 ~t~~g~~-~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------~l~~~~~~a  180 (269)
                      +|+++++ ..++..+++++|++++|+|.|++ |+++++.|...|++|++++|+..                ++.+.++++
T Consensus       132 ~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~i-G~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~a  210 (287)
T TIGR02853       132 PTAEGAIMMAIEHTDFTIHGSNVMVLGFGRT-GMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEI  210 (287)
T ss_pred             hHHHHHHHHHHHhcCCCCCCCEEEEEcChHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccC
Confidence            4666655 45566778999999999999996 99999999999999999988642                245678899


Q ss_pred             CEEEeccCCCCcccCC---CcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceec---c-cCCcccHHHHHH
Q 024306          181 DIVIAAAGVANLVRGS---WLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT---P-VPGGVGPMTVAM  253 (269)
Q Consensus       181 DiVIsAtg~p~~i~~~---~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~t---p-vpgGvGp~T~~m  253 (269)
                      |+||++++.+ .++.+   .+++++++||++|+|             |.+|| +.+++.|..+   | .||.|+|.|.+.
T Consensus       211 DiVint~P~~-ii~~~~l~~~k~~aliIDlas~P-------------g~tdf-~~Ak~~G~~a~~~~glPg~~ap~ta~~  275 (287)
T TIGR02853       211 DIVINTIPAL-VLTADVLSKLPKHAVIIDLASKP-------------GGTDF-EYAKKRGIKALLAPGLPGIVAPKTAGK  275 (287)
T ss_pred             CEEEECCChH-HhCHHHHhcCCCCeEEEEeCcCC-------------CCCCH-HHHHHCCCEEEEeCCCCcccCchhHHH
Confidence            9999999753 34433   468899999999987             66677 4466655332   3 799999999999


Q ss_pred             HHHHHHHHH
Q 024306          254 LLSNTLDSA  262 (269)
Q Consensus       254 Ll~n~v~a~  262 (269)
                      ++.|++...
T Consensus       276 i~~~~~~~~  284 (287)
T TIGR02853       276 ILANVLSEL  284 (287)
T ss_pred             HHHHHHHHH
Confidence            999998654

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=99.51  E-value=2.6e-13  Score=111.72  Aligned_cols=129  Identities=26%  Similarity=0.390  Sum_probs=100.2

Q ss_pred             CCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCC-------------------CHhhhc
Q 024306          118 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK-------------------NPEQIT  177 (269)
Q Consensus       118 ~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~-------------------~l~~~~  177 (269)
                      +|..|+.+.+++.+.++++++++|+|.|++ |++++..|.+.| ..|++++++..                   +..+.+
T Consensus         1 td~~g~~~a~~~~~~~~~~~~i~iiG~G~~-g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (155)
T cd01065           1 TDGLGFVRALEEAGIELKGKKVLILGAGGA-ARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELL   79 (155)
T ss_pred             CCHHHHHHHHHhhCCCCCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhcc
Confidence            367999999999999999999999999886 999999999986 67999977521                   223346


Q ss_pred             CCCCEEEeccCCCC------cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCcccHHHH
Q 024306          178 SEADIVIAAAGVAN------LVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTV  251 (269)
Q Consensus       178 ~~aDiVIsAtg~p~------~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~  251 (269)
                      +++|+||++++.+.      .+....++++.+|+|+++.|..+       .+.      ..+++.+.  .+.+|.     
T Consensus        80 ~~~Dvvi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~-------~l~------~~~~~~g~--~~v~g~-----  139 (155)
T cd01065          80 AEADLIINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYNPLET-------PLL------KEARALGA--KTIDGL-----  139 (155)
T ss_pred             ccCCEEEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCC-------HHH------HHHHHCCC--ceeCCH-----
Confidence            88999999998532      13334568899999999987543       344      44556665  345555     


Q ss_pred             HHHHHHHHHHHHHHhC
Q 024306          252 AMLLSNTLDSAKRAYG  267 (269)
Q Consensus       252 ~mLl~n~v~a~~~~~~  267 (269)
                      .||++|++++|+.|+|
T Consensus       140 ~~~~~q~~~~~~~~~~  155 (155)
T cd01065         140 EMLVYQAAEAFELWTG  155 (155)
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            6999999999999997

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=99.40  E-value=2.1e-13  Score=111.04  Aligned_cols=88  Identities=26%  Similarity=0.300  Sum_probs=70.0

Q ss_pred             HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCCC--------------------CCHhhhcCCCCEEEe
Q 024306          127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT--------------------KNPEQITSEADIVIA  185 (269)
Q Consensus       127 l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t--------------------~~l~~~~~~aDiVIs  185 (269)
                      .++...++++++++|||+||+ |+++++.|..+|++ |++++|+.                    .++.+.+.++|+||+
T Consensus         3 a~~~~~~l~~~~vlviGaGg~-ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~   81 (135)
T PF01488_consen    3 AKKKFGDLKGKRVLVIGAGGA-ARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVIN   81 (135)
T ss_dssp             HCTHHSTGTTSEEEEESSSHH-HHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE
T ss_pred             hHHhcCCcCCCEEEEECCHHH-HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEE
Confidence            344445899999999999998 99999999999986 99999972                    234466789999999


Q ss_pred             ccCCCCc-ccCCCcCCC----cEEEEeeecCCCCC
Q 024306          186 AAGVANL-VRGSWLKPG----AVVLDVGTCPVDDP  215 (269)
Q Consensus       186 Atg~p~~-i~~~~~~~g----~vViDv~~~~~~~~  215 (269)
                      ||+.+.. ++++++++.    .+++|++++|..+|
T Consensus        82 aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~~  116 (135)
T PF01488_consen   82 ATPSGMPIITEEMLKKASKKLRLVIDLAVPRDIDP  116 (135)
T ss_dssp             -SSTTSTSSTHHHHTTTCHHCSEEEES-SS-SB-T
T ss_pred             ecCCCCcccCHHHHHHHHhhhhceeccccCCCCCh
Confidence            9998765 888888886    49999998876553

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=99.26  E-value=8.5e-12  Score=118.32  Aligned_cols=165  Identities=15%  Similarity=0.171  Sum_probs=117.2

Q ss_pred             HHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EE
Q 024306           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TV  163 (269)
Q Consensus        85 i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~V  163 (269)
                      +.++++-.|.+..-|..+.|.+-           -+++++++.++...++++|+++|||+|.+ |..+|+.|..+|. .|
T Consensus       138 FqkAi~~gKrvRseT~I~~~~VS-----------i~saAv~lA~~~~~~L~~~~vlvIGAGem-~~lva~~L~~~g~~~i  205 (414)
T COG0373         138 FQKAISVGKRVRSETGIGKGAVS-----------ISSAAVELAKRIFGSLKDKKVLVIGAGEM-GELVAKHLAEKGVKKI  205 (414)
T ss_pred             HHHHHHHHHHhhcccCCCCCccc-----------hHHHHHHHHHHHhcccccCeEEEEcccHH-HHHHHHHHHhCCCCEE
Confidence            44477778888777777766553           34889999999888899999999999998 9999999999995 69


Q ss_pred             EEEeCCC-----------------CCHhhhcCCCCEEEeccCCCCc-ccCCCcCC------CcEEEEeeecCCCCCCC--
Q 024306          164 SIVHALT-----------------KNPEQITSEADIVIAAAGVANL-VRGSWLKP------GAVVLDVGTCPVDDPSC--  217 (269)
Q Consensus       164 ti~~~~t-----------------~~l~~~~~~aDiVIsAtg~p~~-i~~~~~~~------g~vViDv~~~~~~~~~~--  217 (269)
                      +|+||+-                 .++.+++.++|+||++||+|++ ++.+++..      ..++||++.||+.+|..  
T Consensus       206 ~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdie~~v~~  285 (414)
T COG0373         206 TIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDVEPEVGE  285 (414)
T ss_pred             EEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCCCccccC
Confidence            9999982                 3567899999999999999998 68887644      25899999999876532  


Q ss_pred             CCCceeecccch-HHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 024306          218 EYGYRLMGDVCY-EEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  266 (269)
Q Consensus       218 ~~~~~l~GDvd~-~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~  266 (269)
                      .++ -.+=|+|. +.+.+....-.    --.--....++..-+..|..|+
T Consensus       286 l~~-v~l~~iDDL~~iv~~n~~~R----~~~~~~ae~iIeee~~~~~~~l  330 (414)
T COG0373         286 LPN-VFLYTIDDLEEIVEENLEAR----KEEAAKAEAIIEEELAEFMEWL  330 (414)
T ss_pred             cCC-eEEEehhhHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            011 23335542 12211110000    0000124577777777777775

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=99.18  E-value=6.3e-11  Score=104.68  Aligned_cols=93  Identities=22%  Similarity=0.321  Sum_probs=77.9

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE---EEEEeCC----CC--------------------
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT---VSIVHAL----TK--------------------  171 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~---Vti~~~~----t~--------------------  171 (269)
                      +..|++..++..+.++++++++|+|+|++ |++++.+|...|++   |++++|+    ..                    
T Consensus         8 ~lAG~~~al~~~g~~l~~~rvlvlGAGgA-g~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~   86 (226)
T cd05311           8 TLAGLLNALKLVGKKIEEVKIVINGAGAA-GIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK   86 (226)
T ss_pred             HHHHHHHHHHHhCCCccCCEEEEECchHH-HHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc
Confidence            45788999999999999999999999998 99999999999974   9999987    11                    


Q ss_pred             ---CHhhhcCCCCEEEeccCCCCcccCCCcC---CCcEEEEeeecCCCC
Q 024306          172 ---NPEQITSEADIVIAAAGVANLVRGSWLK---PGAVVLDVGTCPVDD  214 (269)
Q Consensus       172 ---~l~~~~~~aDiVIsAtg~p~~i~~~~~~---~g~vViDv~~~~~~~  214 (269)
                         ++.+.++++|+||++|+ ++.+++++++   ++.+|+|+. ||.+|
T Consensus        87 ~~~~l~~~l~~~dvlIgaT~-~G~~~~~~l~~m~~~~ivf~ls-nP~~e  133 (226)
T cd05311          87 TGGTLKEALKGADVFIGVSR-PGVVKKEMIKKMAKDPIVFALA-NPVPE  133 (226)
T ss_pred             ccCCHHHHHhcCCEEEeCCC-CCCCCHHHHHhhCCCCEEEEeC-CCCCc
Confidence               23355677899999999 7778877776   788999977 88765

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=99.16  E-value=1.1e-10  Score=111.60  Aligned_cols=143  Identities=17%  Similarity=0.131  Sum_probs=100.5

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC------------------CCHhhhcCC
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT------------------KNPEQITSE  179 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t------------------~~l~~~~~~  179 (269)
                      -+.+++++.++...+++|++|+|||+|++ |+.++..|..+|+ ++++++|+.                  .++.+.+.+
T Consensus       164 v~~~Av~la~~~~~~l~~kkvlviGaG~~-a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~  242 (414)
T PRK13940        164 VAFSAITLAKRQLDNISSKNVLIIGAGQT-GELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKK  242 (414)
T ss_pred             HHHHHHHHHHHHhcCccCCEEEEEcCcHH-HHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhcc
Confidence            34677899988777899999999999998 9999999999996 699999872                  123567889


Q ss_pred             CCEEEeccCCCCc-ccCCCcCC-CcEEEEeeecCCCCCCCC--CCceeecccch-HHHhhHcceecccCCcccHHHHHHH
Q 024306          180 ADIVIAAAGVANL-VRGSWLKP-GAVVLDVGTCPVDDPSCE--YGYRLMGDVCY-EEAMRLASVITPVPGGVGPMTVAML  254 (269)
Q Consensus       180 aDiVIsAtg~p~~-i~~~~~~~-g~vViDv~~~~~~~~~~~--~~~~l~GDvd~-~~~~~~~~~~tpvpgGvGp~T~~mL  254 (269)
                      ||+||+||+.|++ ++.++++. ..++||++.+++.+|.-.  .|-.++ |+|. +.+.++.....-    --...+..+
T Consensus       243 aDiVI~aT~a~~~vi~~~~~~~~~~~~iDLavPRdidp~v~~l~~v~l~-~iDdl~~i~~~n~~~R~----~~~~~a~~i  317 (414)
T PRK13940        243 ADIIIAAVNVLEYIVTCKYVGDKPRVFIDISIPQALDPKLGELEQNVYY-CVDDINAVIEDNKDKRK----YESSKAQKI  317 (414)
T ss_pred             CCEEEECcCCCCeeECHHHhCCCCeEEEEeCCCCCCCccccCcCCeEEE-eHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence            9999999999998 78777653 468999999998876421  222333 5542 122221100000    000124577


Q ss_pred             HHHHHHHHHHHhC
Q 024306          255 LSNTLDSAKRAYG  267 (269)
Q Consensus       255 l~n~v~a~~~~~~  267 (269)
                      +.+-+..|..|+.
T Consensus       318 I~e~~~~f~~w~~  330 (414)
T PRK13940        318 IVKSLEEYLEKEK  330 (414)
T ss_pred             HHHHHHHHHHHHH
Confidence            7778888888863

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=99.16  E-value=1.2e-10  Score=87.48  Aligned_cols=78  Identities=29%  Similarity=0.460  Sum_probs=67.0

Q ss_pred             CCHHHHHHHHHHhC----CCCccceEEEEcCCcccHHHHHHHHHhC-CCEEEEEeCCCCCHhhhcCCCCEEEeccCCCCc
Q 024306          118 CTPKGCIELLIRSG----VEIMGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALTKNPEQITSEADIVIAAAGVANL  192 (269)
Q Consensus       118 ~t~~g~~~~l~~~~----~~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t~~l~~~~~~aDiVIsAtg~p~~  192 (269)
                      ||+.++++.|++..    .++++++++|+|+|.+ |++++.+|.+. +.+|++++|            |++|++++.+++
T Consensus         1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~-g~~~a~~l~~~~~~~v~v~~r------------di~i~~~~~~~~   67 (86)
T cd05191           1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEV-GKGIAKLLADEGGKKVVLCDR------------DILVTATPAGVP   67 (86)
T ss_pred             ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHH-HHHHHHHHHHcCCCEEEEEcC------------CEEEEcCCCCCC
Confidence            57888888887654    4589999999999886 99999999998 467999976            999999999998


Q ss_pred             ccC---CCcCCCcEEEEee
Q 024306          193 VRG---SWLKPGAVVLDVG  208 (269)
Q Consensus       193 i~~---~~~~~g~vViDv~  208 (269)
                      +.+   .+++++.+|+|++
T Consensus        68 ~~~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          68 VLEEATAKINEGAVVIDLA   86 (86)
T ss_pred             chHHHHHhcCCCCEEEecC
Confidence            766   6788999999974

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=99.10  E-value=7.7e-10  Score=94.96  Aligned_cols=96  Identities=30%  Similarity=0.311  Sum_probs=72.3

Q ss_pred             CHHHHHHHHH----HhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------
Q 024306          119 TPKGCIELLI----RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------  171 (269)
Q Consensus       119 t~~g~~~~l~----~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------  171 (269)
                      |+.+.++.++    +++.++++++++|+|+.|.+|+.++..|.++|++|++++|+..                       
T Consensus         7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~   86 (194)
T cd01078           7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETS   86 (194)
T ss_pred             HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCC
Confidence            5566555554    4567999999999997444599999999999999999987521                       


Q ss_pred             ---CHhhhcCCCCEEEeccCCCC--cccC-CCcCCCcEEEEeeecCCCC
Q 024306          172 ---NPEQITSEADIVIAAAGVAN--LVRG-SWLKPGAVVLDVGTCPVDD  214 (269)
Q Consensus       172 ---~l~~~~~~aDiVIsAtg~p~--~i~~-~~~~~g~vViDv~~~~~~~  214 (269)
                         ++.+.++++|+||++|+.+.  .... ...+++.+++|+.|+|..+
T Consensus        87 ~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~  135 (194)
T cd01078          87 DDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLAVAADVNAVPPVG  135 (194)
T ss_pred             CHHHHHHHHhcCCEEEECCCCCceechhhhcccCceeEEEEccCCCCCC
Confidence               11356788999999998765  3222 2345688999999999766

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.06  E-value=3.9e-10  Score=94.36  Aligned_cols=91  Identities=24%  Similarity=0.416  Sum_probs=65.7

Q ss_pred             HHHHHHHH-HhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEec
Q 024306          121 KGCIELLI-RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAA  186 (269)
Q Consensus       121 ~g~~~~l~-~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIsA  186 (269)
                      +..++.+. ..+..+.||+++|+|.|.. ||.+|+.|..+|+.|+|+....             ..+.+.++++|++|+|
T Consensus         7 ~S~~d~i~r~t~~~l~Gk~vvV~GYG~v-G~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vta   85 (162)
T PF00670_consen    7 QSLVDGIMRATNLMLAGKRVVVIGYGKV-GKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTA   85 (162)
T ss_dssp             HHHHHHHHHHH-S--TTSEEEEE--SHH-HHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-
T ss_pred             hhHHHHHHhcCceeeCCCEEEEeCCCcc-cHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEEC
Confidence            44444444 5688899999999999996 9999999999999999997652             3577889999999999


Q ss_pred             cCCCCcccCCC---cCCCcEEEEeeecCC
Q 024306          187 AGVANLVRGSW---LKPGAVVLDVGTCPV  212 (269)
Q Consensus       187 tg~p~~i~~~~---~~~g~vViDv~~~~~  212 (269)
                      ||..+.++.++   +|+|+++.+++....
T Consensus        86 TG~~~vi~~e~~~~mkdgail~n~Gh~d~  114 (162)
T PF00670_consen   86 TGNKDVITGEHFRQMKDGAILANAGHFDV  114 (162)
T ss_dssp             SSSSSSB-HHHHHHS-TTEEEEESSSSTT
T ss_pred             CCCccccCHHHHHHhcCCeEEeccCcCce
Confidence            99988887665   689999999997653

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.99  E-value=4.2e-09  Score=98.19  Aligned_cols=90  Identities=21%  Similarity=0.249  Sum_probs=74.1

Q ss_pred             HHHhCCCCccceEEEEcCCcccHHHHHHHHHhC-CC-EEEEEeCCCC---------------CHhhhcCCCCEEEeccCC
Q 024306          127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH-HA-TVSIVHALTK---------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       127 l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga-~Vti~~~~t~---------------~l~~~~~~aDiVIsAtg~  189 (269)
                      .+..+.++++|+|+|+|++|.+|+.+++.|..+ |+ ++++++|+..               ++.+.+.++|+||++++.
T Consensus       146 ~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~  225 (340)
T PRK14982        146 APRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASM  225 (340)
T ss_pred             HHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcC
Confidence            345667899999999999888899999999754 54 7999988631               223677899999999998


Q ss_pred             CCc--ccCCCcCCCcEEEEeeecCCCCCC
Q 024306          190 ANL--VRGSWLKPGAVVLDVGTCPVDDPS  216 (269)
Q Consensus       190 p~~--i~~~~~~~g~vViDv~~~~~~~~~  216 (269)
                      |+.  ++++++++++++||++++++.+|.
T Consensus       226 ~~~~~I~~~~l~~~~~viDiAvPRDVd~~  254 (340)
T PRK14982        226 PKGVEIDPETLKKPCLMIDGGYPKNLDTK  254 (340)
T ss_pred             CcCCcCCHHHhCCCeEEEEecCCCCCCcc
Confidence            664  788999999999999999987653

>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []

Probab=98.95  E-value=6e-10  Score=83.41  Aligned_cols=78  Identities=17%  Similarity=0.230  Sum_probs=59.4

Q ss_pred             CcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccc
Q 024306           19 RRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG   97 (269)
Q Consensus        19 ~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg   97 (269)
                      +|.+||.++..++ +|+++|+++.|..|+.+  ++++.+.++.+++ +++.|++||+|||+.+  .++++.+++  .+..
T Consensus         4 ~pi~hS~SP~~hn~~f~~~g~~~~Y~~~~v~--~~~l~~~~~~~~~-~~~~G~~VT~P~K~~~--~~~~D~~~~--~A~~   76 (83)
T PF08501_consen    4 NPISHSLSPLIHNAAFEALGLDAVYIPFEVE--PEDLEDFLDALRA-PNFRGLNVTMPHKEAA--IPYLDELSP--SAKA   76 (83)
T ss_dssp             SSSTT-SHHHHHHHHHHHTTSSEEEEEEETS--TTCHHHHHHHHHH-TTESEEEE-TTSTTHH--GGGSSEE-H--HHHH
T ss_pred             CCcccccCHHHHHHHHHHcCCCcEEEEeecC--HHHHHHHHHHHhc-CCCCeeeecchHHHHH--HHHhccCCH--HHHH
Confidence            7899999999888 99999999999999764  6789999999998 7999999999999733  555555555  3333


Q ss_pred             ccccee
Q 024306           98 FHPLNI  103 (269)
Q Consensus        98 ~~~~n~  103 (269)
                      ++++|+
T Consensus        77 igAvNt   82 (83)
T PF08501_consen   77 IGAVNT   82 (83)
T ss_dssp             HTS-SE
T ss_pred             hCCccc
Confidence            345664

Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.91  E-value=2.5e-09  Score=103.26  Aligned_cols=111  Identities=21%  Similarity=0.235  Sum_probs=82.3

Q ss_pred             HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEeccCCCCcc
Q 024306          127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLV  193 (269)
Q Consensus       127 l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIsAtg~p~~i  193 (269)
                      ++..+..+.||+++|+|.|.+ |+++|+.|..+|++|+++++..             .++.+.++.||+||+++|.++++
T Consensus       245 ~R~~~~~LaGKtVgVIG~G~I-Gr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~atGt~~iI  323 (476)
T PTZ00075        245 FRATDVMIAGKTVVVCGYGDV-GKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTATGNKDII  323 (476)
T ss_pred             HHhcCCCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECCCccccc
Confidence            344578899999999999985 9999999999999999996652             24667889999999999998889


Q ss_pred             cCCCc---CCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceec
Q 024306          194 RGSWL---KPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT  240 (269)
Q Consensus       194 ~~~~~---~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~t  240 (269)
                      +.++|   ++|++++++|....+....  .-+..+|+|...+.+....+|
T Consensus       324 ~~e~~~~MKpGAiLINvGr~d~Ei~i~--aL~~~~~vdv~evep~v~~~~  371 (476)
T PTZ00075        324 TLEHMRRMKNNAIVGNIGHFDNEIQVA--ELEAYPGIEIVEIKPQVDRYT  371 (476)
T ss_pred             CHHHHhccCCCcEEEEcCCCchHHhHH--HHHhcCCceeecccCCCCeEE
Confidence            87765   8999999999874221000  002235666555455444444

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=98.88  E-value=7.7e-09  Score=96.23  Aligned_cols=94  Identities=15%  Similarity=0.074  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC-----CHh----hhcCCCCEEEec---
Q 024306          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK-----NPE----QITSEADIVIAA---  186 (269)
Q Consensus       120 ~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~-----~l~----~~~~~aDiVIsA---  186 (269)
                      +.+++++.+.. .++++|+|+|||+|.+ |+.+++.|..+|+ .|+++||+..     ++.    ++..++||||++   
T Consensus       159 ~s~av~~~~~~-~~l~~k~vLvIGaGem-~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~  236 (338)
T PRK00676        159 ESVVQQELRRR-QKSKKASLLFIGYSEI-NRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSE  236 (338)
T ss_pred             HHHHHHHHHHh-CCccCCEEEEEcccHH-HHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCc
Confidence            34466777664 6799999999999998 9999999999995 6999999831     222    456799999997   


Q ss_pred             cCCCCc-ccCCCcCC--CcEEEEeeecCCCCC
Q 024306          187 AGVANL-VRGSWLKP--GAVVLDVGTCPVDDP  215 (269)
Q Consensus       187 tg~p~~-i~~~~~~~--g~vViDv~~~~~~~~  215 (269)
                      |+.|++ ++.+++++  ..++||++.+++.+|
T Consensus       237 Tas~~p~i~~~~~~~~~~r~~iDLAvPRdId~  268 (338)
T PRK00676        237 SAYAFPHLSWESLADIPDRIVFDFNVPRTFPW  268 (338)
T ss_pred             CCCCCceeeHHHHhhccCcEEEEecCCCCCcc
Confidence            667887 66666643  248999999998775

>PLN00203 glutamyl-tRNA reductase

Probab=98.78  E-value=1.9e-08  Score=98.81  Aligned_cols=143  Identities=12%  Similarity=0.093  Sum_probs=95.9

Q ss_pred             CHHHHHHHHHHhCC--CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------CCHhh
Q 024306          119 TPKGCIELLIRSGV--EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------KNPEQ  175 (269)
Q Consensus       119 t~~g~~~~l~~~~~--~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------~~l~~  175 (269)
                      -+.+++++.++...  ++.+++|+|||+|++ |+.++..|..+|+ .|++++|+.                    .++.+
T Consensus       247 v~s~Av~la~~~~~~~~l~~kkVlVIGAG~m-G~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~  325 (519)
T PLN00203        247 VSSAAVELALMKLPESSHASARVLVIGAGKM-GKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLA  325 (519)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCEEEEEeCHHH-HHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHH
Confidence            34577888876644  489999999999997 9999999999997 699998862                    12345


Q ss_pred             hcCCCCEEEeccCCCCc-ccCCCcCC----------CcEEEEeeecCCCCCCCC--CCceeecccch-HHHhhHcceecc
Q 024306          176 ITSEADIVIAAAGVANL-VRGSWLKP----------GAVVLDVGTCPVDDPSCE--YGYRLMGDVCY-EEAMRLASVITP  241 (269)
Q Consensus       176 ~~~~aDiVIsAtg~p~~-i~~~~~~~----------g~vViDv~~~~~~~~~~~--~~~~l~GDvd~-~~~~~~~~~~tp  241 (269)
                      .+.++|+||++|+.+++ ++.+++++          ..++||++.+++.+|.-.  .+-.++ |+|. +.+.++.....-
T Consensus       326 al~~aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp~v~~l~~v~ly-diDdL~~i~~~n~~~R~  404 (519)
T PLN00203        326 CAAEADVVFTSTSSETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGACVSELESARVY-NVDDLKEVVAANKEDRL  404 (519)
T ss_pred             HHhcCCEEEEccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCccccccCCCCeEE-EeccHHHHHHHhHHHHH
Confidence            67899999999998876 78877643          258999999998775311  122232 5552 222221110000


Q ss_pred             cCCcccHHHHHHHHHHHHHHHHHHhC
Q 024306          242 VPGGVGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       242 vpgGvGp~T~~mLl~n~v~a~~~~~~  267 (269)
                          ---.-+.-++..-+..|+.|+.
T Consensus       405 ----~~~~~Ae~II~ee~~~F~~w~~  426 (519)
T PLN00203        405 ----RKAMEAQTIIREESKNFEAWRD  426 (519)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHH
Confidence                0001145677777888888864

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.71  E-value=3.8e-08  Score=94.56  Aligned_cols=96  Identities=19%  Similarity=0.294  Sum_probs=75.2

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC-----------------CHhhhcCCC
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK-----------------NPEQITSEA  180 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~-----------------~l~~~~~~a  180 (269)
                      .+..++++.+....++.|++|+|+|+|.+ |+.++..|...|+ .|++++++..                 ++.+.+.++
T Consensus       165 v~~~Av~~a~~~~~~~~~~~vlViGaG~i-G~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~a  243 (423)
T PRK00045        165 VASAAVELAKQIFGDLSGKKVLVIGAGEM-GELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEA  243 (423)
T ss_pred             HHHHHHHHHHHhhCCccCCEEEEECchHH-HHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccC
Confidence            33455666655444789999999999987 9999999999997 7999988621                 233457889


Q ss_pred             CEEEeccCCCCc-ccCCCcCC--------CcEEEEeeecCCCCC
Q 024306          181 DIVIAAAGVANL-VRGSWLKP--------GAVVLDVGTCPVDDP  215 (269)
Q Consensus       181 DiVIsAtg~p~~-i~~~~~~~--------g~vViDv~~~~~~~~  215 (269)
                      |+||+|||.|++ ++.+|+++        +.+++|++.++..+|
T Consensus       244 DvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~  287 (423)
T PRK00045        244 DIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRDIEP  287 (423)
T ss_pred             CEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCcc
Confidence            999999998876 78888743        479999998887665

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.66  E-value=4.6e-08  Score=93.86  Aligned_cols=142  Identities=20%  Similarity=0.211  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCC-----------------CHhhhcCCCC
Q 024306          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK-----------------NPEQITSEAD  181 (269)
Q Consensus       120 ~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~-----------------~l~~~~~~aD  181 (269)
                      +.+++++.++...+++|++|+|+|+|.+ |+.++..|...| ..|++++|+..                 ++.+.+.++|
T Consensus       164 ~~~Av~la~~~~~~l~~~~VlViGaG~i-G~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aD  242 (417)
T TIGR01035       164 SSAAVELAERIFGSLKGKKALLIGAGEM-GELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEAD  242 (417)
T ss_pred             HHHHHHHHHHHhCCccCCEEEEECChHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCC
Confidence            4566777776656799999999999887 999999999999 57999988631                 2345678999


Q ss_pred             EEEeccCCCCc-ccCCCcCC-------CcEEEEeeecCCCCCCC--CCCceeecccc-hHHHhhHcceecccCCcccHHH
Q 024306          182 IVIAAAGVANL-VRGSWLKP-------GAVVLDVGTCPVDDPSC--EYGYRLMGDVC-YEEAMRLASVITPVPGGVGPMT  250 (269)
Q Consensus       182 iVIsAtg~p~~-i~~~~~~~-------g~vViDv~~~~~~~~~~--~~~~~l~GDvd-~~~~~~~~~~~tpvpgGvGp~T  250 (269)
                      +||++||.|++ ++.+++++       ..+++|++.++..+|.-  ..+..++ |+| .+.+.++.....-    ----.
T Consensus       243 vVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid~~v~~l~~v~l~-~vDdl~~~~~~n~~~r~----~~~~~  317 (417)
T TIGR01035       243 IVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPRDVDPAVARLEGVFLY-DVDDLQPVVEENLAERR----EEAEK  317 (417)
T ss_pred             EEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCChhhcCcCCeEEE-EHHHHHHHHHHhHHHHH----HHHHH
Confidence            99999998876 78887743       35999999887766532  1121222 333 1222221111000    00012


Q ss_pred             HHHHHHHHHHHHHHHhC
Q 024306          251 VAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       251 ~~mLl~n~v~a~~~~~~  267 (269)
                      +.-++.+-+..|..|+.
T Consensus       318 a~~ii~~~~~~f~~w~~  334 (417)
T TIGR01035       318 AEEIVEEETAEFKQWLR  334 (417)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            45677777788888864

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.60  E-value=1.5e-07  Score=90.28  Aligned_cols=92  Identities=24%  Similarity=0.338  Sum_probs=77.0

Q ss_pred             CHHHHHHHHHHh-CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEE
Q 024306          119 TPKGCIELLIRS-GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVI  184 (269)
Q Consensus       119 t~~g~~~~l~~~-~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVI  184 (269)
                      |..+++..+++. +..+.|++|+|+|.|.+ |+.++..|...|++|+++++..             .++.+.++.+|+||
T Consensus       194 t~~s~~~ai~rat~~~l~Gk~VlViG~G~I-G~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI  272 (425)
T PRK05476        194 TGESLLDGIKRATNVLIAGKVVVVAGYGDV-GKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFV  272 (425)
T ss_pred             HHhhhHHHHHHhccCCCCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEE
Confidence            678888777665 77889999999999986 9999999999999999997653             13567788999999


Q ss_pred             eccCCCCcccCC---CcCCCcEEEEeeecC
Q 024306          185 AAAGVANLVRGS---WLKPGAVVLDVGTCP  211 (269)
Q Consensus       185 sAtg~p~~i~~~---~~~~g~vViDv~~~~  211 (269)
                      ++||.++.++.+   .+++|++++.+|...
T Consensus       273 ~aTG~~~vI~~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        273 TATGNKDVITAEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             ECCCCHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence            999988877654   468999999999754

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.51  E-value=4.3e-07  Score=86.69  Aligned_cols=93  Identities=28%  Similarity=0.389  Sum_probs=75.2

Q ss_pred             CHHHHHHHHHH-hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEE
Q 024306          119 TPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVI  184 (269)
Q Consensus       119 t~~g~~~~l~~-~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVI  184 (269)
                      |...+++.+.+ .++.+.|++|+|+|.|.+ |+.+++.|...|++|+++.+..             .++.+.++.+|+||
T Consensus       177 ~g~s~~~~i~r~t~~~l~Gk~VvViG~G~I-G~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVI  255 (406)
T TIGR00936       177 TGQSTIDGILRATNLLIAGKTVVVAGYGWC-GKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFI  255 (406)
T ss_pred             cchhHHHHHHHhcCCCCCcCEEEEECCCHH-HHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEE
Confidence            56666665554 477899999999999996 9999999999999999986542             13466788999999


Q ss_pred             eccCCCCcccC---CCcCCCcEEEEeeecCC
Q 024306          185 AAAGVANLVRG---SWLKPGAVVLDVGTCPV  212 (269)
Q Consensus       185 sAtg~p~~i~~---~~~~~g~vViDv~~~~~  212 (269)
                      ++||.++.++.   ..+++|++++.+|....
T Consensus       256 taTG~~~vI~~~~~~~mK~GailiN~G~~~~  286 (406)
T TIGR00936       256 TATGNKDVIRGEHFENMKDGAIVANIGHFDV  286 (406)
T ss_pred             ECCCCHHHHHHHHHhcCCCCcEEEEECCCCc
Confidence            99998887766   35689999999987543

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.50  E-value=3.5e-07  Score=84.48  Aligned_cols=95  Identities=21%  Similarity=0.295  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC-----------------CHhhhcCCCC
Q 024306          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK-----------------NPEQITSEAD  181 (269)
Q Consensus       120 ~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~-----------------~l~~~~~~aD  181 (269)
                      +..+++..+....++.|++|+|+|+|.+ |+.++..|...|+ .|++++|+..                 ++.+.+.++|
T Consensus       162 ~~~Av~~a~~~~~~l~~~~V~ViGaG~i-G~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aD  240 (311)
T cd05213         162 SSAAVELAEKIFGNLKGKKVLVIGAGEM-GELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEAD  240 (311)
T ss_pred             HHHHHHHHHHHhCCccCCEEEEECcHHH-HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCC
Confidence            3445777776555689999999999887 9999999998775 6999988631                 2345678899


Q ss_pred             EEEeccCCCCc---ccC---CCcCCCcEEEEeeecCCCCC
Q 024306          182 IVIAAAGVANL---VRG---SWLKPGAVVLDVGTCPVDDP  215 (269)
Q Consensus       182 iVIsAtg~p~~---i~~---~~~~~g~vViDv~~~~~~~~  215 (269)
                      +||++||.|++   +..   ....++.+++|++.++..+|
T Consensus       241 vVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrdi~~  280 (311)
T cd05213         241 VVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRDIEP  280 (311)
T ss_pred             EEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCCCch
Confidence            99999998765   211   12235789999998776554

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.50  E-value=3.3e-07  Score=85.07  Aligned_cols=90  Identities=24%  Similarity=0.384  Sum_probs=73.4

Q ss_pred             CHHHHHHHHH-HhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEE
Q 024306          119 TPKGCIELLI-RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVI  184 (269)
Q Consensus       119 t~~g~~~~l~-~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVI  184 (269)
                      |....+.-+. ..++-+.||+++|.|.|.+ ||.+|+.|...||+|.|..-..             ..+.++.+.+||+|
T Consensus       191 tgqS~~DgI~RaTn~liaGK~vVV~GYG~v-GrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifi  269 (420)
T COG0499         191 TGQSLLDGILRATNVLLAGKNVVVAGYGWV-GRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFV  269 (420)
T ss_pred             cchhHHHHHHhhhceeecCceEEEeccccc-chHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEE
Confidence            4555555444 3678899999999999996 9999999999999999886442             23567889999999


Q ss_pred             eccCCCCcccCCCc---CCCcEEEEeee
Q 024306          185 AAAGVANLVRGSWL---KPGAVVLDVGT  209 (269)
Q Consensus       185 sAtg~p~~i~~~~~---~~g~vViDv~~  209 (269)
                      |+||.-+.++.+++   |+|+++..+|.
T Consensus       270 T~TGnkdVi~~eh~~~MkDgaIl~N~GH  297 (420)
T COG0499         270 TATGNKDVIRKEHFEKMKDGAILANAGH  297 (420)
T ss_pred             EccCCcCccCHHHHHhccCCeEEecccc
Confidence            99999888887764   78999988883

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=98.48  E-value=4.6e-07  Score=81.25  Aligned_cols=149  Identities=19%  Similarity=0.264  Sum_probs=98.4

Q ss_pred             CcCEEEEeCCCCC-------CCCHHHHHhcCCcccc----cccc---ccc--eecccccCC-------CCCccccCCHHH
Q 024306           66 SINGILVQLPLPQ-------HLDEGKILDAVSLEKD----VDGF---HPL--NIGNLAMRG-------REPLFIPCTPKG  122 (269)
Q Consensus        66 ~v~Gi~V~~Pl~~-------~~~~~~i~~~i~p~kd----vdg~---~~~--n~g~l~~g~-------~~~~~~p~t~~g  122 (269)
                      -+.|+++..||-.       +...++++++....++    |-|+   +++  |.|.-..-.       +-..+-.-|+++
T Consensus        70 vieg~l~~~pllpe~~~s~pkaatrrvl~a~~~a~~~Ga~V~gLGgFssIVgn~~~n~q~~~~e~t~~~~ttgns~Taya  149 (351)
T COG5322          70 VIEGYLVESPLLPEMLRSRPKAATRRVLNAMALAQKLGADVTGLGGFSSIVGNLGQNVQVRNVELTFTRFTTGNSHTAYA  149 (351)
T ss_pred             EEEEEEEccccCHHHHhhCHHHHHHHHHHHHHHHHHcCCeEEeecchhhhhccccccccccceEEEEEecccCCccchHH
Confidence            4789999999843       1223466666655444    3333   211  222111000       000112236665


Q ss_pred             ----HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------CH-hhhc
Q 024306          123 ----CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NP-EQIT  177 (269)
Q Consensus       123 ----~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l-~~~~  177 (269)
                          +++.+++.|++++..+|.|+|+-|.+|.++++.|+.++....+++|...                    ++ .+++
T Consensus       150 a~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~  229 (351)
T COG5322         150 ACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALP  229 (351)
T ss_pred             HHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeecccccc
Confidence                4566677899999999999999999999999999999988888875420                    11 2344


Q ss_pred             CCCCEEEeccCCCCc-ccCCCcCCCcEEEEeeecCCCC
Q 024306          178 SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCPVDD  214 (269)
Q Consensus       178 ~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~~~~~~  214 (269)
                      .++++|.+|+..++. |.+.++|||++|+|-||+.+-+
T Consensus       230 ~e~i~v~vAs~~~g~~I~pq~lkpg~~ivD~g~P~dvd  267 (351)
T COG5322         230 QEDILVWVASMPKGVEIFPQHLKPGCLIVDGGYPKDVD  267 (351)
T ss_pred             ccceEEEEeecCCCceechhhccCCeEEEcCCcCcccc
Confidence            445555588777665 8999999999999999987644

>PLN02928 oxidoreductase family protein

Probab=98.45  E-value=2e-06  Score=80.69  Aligned_cols=134  Identities=21%  Similarity=0.263  Sum_probs=92.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------------CCHhhhcCCCCEEEec
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------------KNPEQITSEADIVIAA  186 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------------~~l~~~~~~aDiVIsA  186 (269)
                      .++.||++.|||.|.+ |+.+|+.|...|++|+.++++.                         .++.+.+++||+|+.+
T Consensus       155 ~~l~gktvGIiG~G~I-G~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~  233 (347)
T PLN02928        155 DTLFGKTVFILGYGAI-GIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC  233 (347)
T ss_pred             cCCCCCEEEEECCCHH-HHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence            4689999999999997 9999999999999999987641                         1467888999999999


Q ss_pred             cCC----CCcccCCC---cCCCcEEEEeeecCCCCCCC----CCCceeec---ccch--------HHHhhHcceecccCC
Q 024306          187 AGV----ANLVRGSW---LKPGAVVLDVGTCPVDDPSC----EYGYRLMG---DVCY--------EEAMRLASVITPVPG  244 (269)
Q Consensus       187 tg~----p~~i~~~~---~~~g~vViDv~~~~~~~~~~----~~~~~l~G---Dvd~--------~~~~~~~~~~tpvpg  244 (269)
                      ++.    .++++.+.   +++|+++|+++.....+...    ...+++.|   ||-.        .-..-..-.+||-.+
T Consensus       234 lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia  313 (347)
T PLN02928        234 CTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVA  313 (347)
T ss_pred             CCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCC
Confidence            883    34676664   58899999998766543110    00113432   5521        111112447888888


Q ss_pred             cccHHHHHHHHHHHHHHHHHHh
Q 024306          245 GVGPMTVAMLLSNTLDSAKRAY  266 (269)
Q Consensus       245 GvGp~T~~mLl~n~v~a~~~~~  266 (269)
                      |.-.-+..-+....++..++|+
T Consensus       314 ~~t~~~~~~~~~~~~~nl~~~~  335 (347)
T PLN02928        314 GVTEYSYRSMGKIVGDAALQLH  335 (347)
T ss_pred             CChHHHHHHHHHHHHHHHHHHH
Confidence            8765555555566666666554

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.38  E-value=6.7e-07  Score=84.60  Aligned_cols=124  Identities=25%  Similarity=0.285  Sum_probs=83.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------CCHhhhcCCCCEEEeccC---C
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAG---V  189 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------~~l~~~~~~aDiVIsAtg---~  189 (269)
                      +.+++|+|+|+|.+ |+.++..|...|++|++++++.                     .++.+.++++|+||++++   .
T Consensus       165 l~~~~VlViGaG~v-G~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       165 VEPGDVTIIGGGVV-GTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCceEEEEcCCHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence            57889999999886 9999999999999999998642                     124566789999999984   2


Q ss_pred             --CCcccCCC---cCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhh---HcceecccCCcccHHHHHHHHHHHHHH
Q 024306          190 --ANLVRGSW---LKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMR---LASVITPVPGGVGPMTVAMLLSNTLDS  261 (269)
Q Consensus       190 --p~~i~~~~---~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~---~~~~~tpvpgGvGp~T~~mLl~n~v~a  261 (269)
                        |.+++.++   ++++.+|+|+++.+-  .+.++. + .+..|+..+..   ..-++.=.|+-+ |.|...++.|.+..
T Consensus       244 ~~p~lit~~~l~~mk~g~vIvDva~d~G--G~~e~~-~-~t~~d~p~~~~~Gv~~~~v~nlP~~~-p~~aS~~~~~~l~~  318 (370)
T TIGR00518       244 KAPKLVSNSLVAQMKPGAVIVDVAIDQG--GCVETS-R-PTTHDQPTYAVHDVVHYCVANMPGAV-PKTSTYALTNATMP  318 (370)
T ss_pred             CCCcCcCHHHHhcCCCCCEEEEEecCCC--CCccCC-c-CCCCCCCEEEECCeEEEEeCCccccc-HHHHHHHHHHHHHH
Confidence              44577665   478999999998763  111100 1 12222111110   112233457777 99998888887765


Q ss_pred             HH
Q 024306          262 AK  263 (269)
Q Consensus       262 ~~  263 (269)
                      +-
T Consensus       319 ~l  320 (370)
T TIGR00518       319 YV  320 (370)
T ss_pred             HH
Confidence            53

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=98.34  E-value=1.7e-06  Score=80.50  Aligned_cols=91  Identities=16%  Similarity=0.225  Sum_probs=70.4

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHH-hCCC-EEEEEeCCC---------------------CCH
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ-RHHA-TVSIVHALT---------------------KNP  173 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~-~~ga-~Vti~~~~t---------------------~~l  173 (269)
                      .+++.+++....-.  ....++++|||+|+. |+..+..|. .++. +|++++|+.                     .++
T Consensus       112 RTaa~~~laa~~la--~~~~~~v~iiGaG~q-A~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~  188 (326)
T TIGR02992       112 RTAAAGAVAARHLA--REDSSVVAIFGAGMQ-ARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDP  188 (326)
T ss_pred             HHHHHHHHHHHHhC--CCCCcEEEEECCCHH-HHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCH
Confidence            44556666655322  235689999999998 999999987 4674 699998862                     245


Q ss_pred             hhhcCCCCEEEeccCCCCc-ccCCCcCCCcEEEEeeec
Q 024306          174 EQITSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       174 ~~~~~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~~  210 (269)
                      ++.+++||+||++|+.+.+ ++.+|+++|+.|..++.+
T Consensus       189 ~~av~~aDiVvtaT~s~~p~i~~~~l~~g~~i~~vg~~  226 (326)
T TIGR02992       189 RAAMSGADIIVTTTPSETPILHAEWLEPGQHVTAMGSD  226 (326)
T ss_pred             HHHhccCCEEEEecCCCCcEecHHHcCCCcEEEeeCCC
Confidence            5678899999999997665 789999999999999864

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.34  E-value=2.1e-06  Score=82.18  Aligned_cols=92  Identities=26%  Similarity=0.384  Sum_probs=73.2

Q ss_pred             CHHHHHHHH-HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEE
Q 024306          119 TPKGCIELL-IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVI  184 (269)
Q Consensus       119 t~~g~~~~l-~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVI  184 (269)
                      |...+++.+ +..++.+.|++|+|+|+|.+ |+.+++.+...|++|+++.+..             ..+.+.++.+|+||
T Consensus       184 ~g~s~~~~i~r~t~~~l~GktVvViG~G~I-G~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI  262 (413)
T cd00401         184 CRESLIDGIKRATDVMIAGKVAVVAGYGDV-GKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFV  262 (413)
T ss_pred             hchhhHHHHHHhcCCCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEE
Confidence            455555544 45678899999999999986 9999999999999999986542             13456778999999


Q ss_pred             eccCCCCcccC---CCcCCCcEEEEeeecC
Q 024306          185 AAAGVANLVRG---SWLKPGAVVLDVGTCP  211 (269)
Q Consensus       185 sAtg~p~~i~~---~~~~~g~vViDv~~~~  211 (269)
                      +++|.++.+..   +.+++|.+++.+|..+
T Consensus       263 ~atG~~~~i~~~~l~~mk~GgilvnvG~~~  292 (413)
T cd00401         263 TTTGNKDIITGEHFEQMKDGAIVCNIGHFD  292 (413)
T ss_pred             ECCCCHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            99998876654   4578999999999654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.33  E-value=1.1e-06  Score=74.56  Aligned_cols=82  Identities=26%  Similarity=0.382  Sum_probs=65.2

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEeccCC-C---Cc
Q 024306          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV-A---NL  192 (269)
Q Consensus       130 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIsAtg~-p---~~  192 (269)
                      .+.++.|++|.|+|.|.+ |+.+|+.|...|++|..++++.             .++.+.+++||+|+...+. +   ++
T Consensus        30 ~~~~l~g~tvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T~~l  108 (178)
T PF02826_consen   30 PGRELRGKTVGIIGYGRI-GRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPETRGL  108 (178)
T ss_dssp             TBS-STTSEEEEESTSHH-HHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTTTTS
T ss_pred             CccccCCCEEEEEEEcCC-cCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhcccccccee
Confidence            456789999999999997 9999999999999999998874             3577889999999999883 3   46


Q ss_pred             ccCCC---cCCCcEEEEeeecCC
Q 024306          193 VRGSW---LKPGAVVLDVGTCPV  212 (269)
Q Consensus       193 i~~~~---~~~g~vViDv~~~~~  212 (269)
                      ++.+.   +++|+++|+++....
T Consensus       109 i~~~~l~~mk~ga~lvN~aRG~~  131 (178)
T PF02826_consen  109 INAEFLAKMKPGAVLVNVARGEL  131 (178)
T ss_dssp             BSHHHHHTSTTTEEEEESSSGGG
T ss_pred             eeeeeeeccccceEEEeccchhh
Confidence            77664   588999999986543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PLN02494 adenosylhomocysteinase

Probab=98.32  E-value=1.8e-06  Score=83.60  Aligned_cols=90  Identities=24%  Similarity=0.340  Sum_probs=72.3

Q ss_pred             CHHHHHHHHH-HhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------CHhhhcCCCCEEE
Q 024306          119 TPKGCIELLI-RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVI  184 (269)
Q Consensus       119 t~~g~~~~l~-~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~~~aDiVI  184 (269)
                      |...+++.+. ..++.+.||+++|+|.|.+ |+.+++.+...|++|+++.+...             .+.+.++.+|+||
T Consensus       236 tgqS~~d~i~r~t~i~LaGKtVvViGyG~I-Gr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI  314 (477)
T PLN02494        236 CRHSLPDGLMRATDVMIAGKVAVICGYGDV-GKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFV  314 (477)
T ss_pred             ccccHHHHHHHhcCCccCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEE
Confidence            4455555554 4477789999999999986 99999999999999999865431             3457788999999


Q ss_pred             eccCCCCcccCC---CcCCCcEEEEeee
Q 024306          185 AAAGVANLVRGS---WLKPGAVVLDVGT  209 (269)
Q Consensus       185 sAtg~p~~i~~~---~~~~g~vViDv~~  209 (269)
                      +++|..+.+..+   .+++|++++.+|.
T Consensus       315 ~tTGt~~vI~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        315 TTTGNKDIIMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             ECCCCccchHHHHHhcCCCCCEEEEcCC
Confidence            999988876433   5789999999997

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=98.28  E-value=1.3e-05  Score=76.04  Aligned_cols=142  Identities=21%  Similarity=0.233  Sum_probs=98.1

Q ss_pred             HHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCCEEEeccCC-C-----
Q 024306          126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV-A-----  190 (269)
Q Consensus       126 ~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~aDiVIsAtg~-p-----  190 (269)
                      +.++.+.++.||++.|||.|.+ |+.+++.|...|.+|..+++..         .++.+.+++||+|+..++. +     
T Consensus       106 l~r~~g~~l~gktvGIIG~G~I-G~~va~~l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~  184 (381)
T PRK00257        106 LAEREGVDLAERTYGVVGAGHV-GGRLVRVLRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHP  184 (381)
T ss_pred             HhcccCCCcCcCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCcccc
Confidence            3345678899999999999996 9999999999999999987531         2577888999999988873 2     


Q ss_pred             --CcccCC---CcCCCcEEEEeeecCCCCCCCC----CCce---eecccch------HHHhhHcceecccCCcccHHHHH
Q 024306          191 --NLVRGS---WLKPGAVVLDVGTCPVDDPSCE----YGYR---LMGDVCY------EEAMRLASVITPVPGGVGPMTVA  252 (269)
Q Consensus       191 --~~i~~~---~~~~g~vViDv~~~~~~~~~~~----~~~~---l~GDvd~------~~~~~~~~~~tpvpgGvGp~T~~  252 (269)
                        ++++.+   .+++|+++|+++..+..+....    ..++   ..=||=.      ..+....-.+||-.+|...=+..
T Consensus       185 T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~nvi~TPHiAg~s~e~~~  264 (381)
T PRK00257        185 TRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADLCTIATPHIAGYSLDGKA  264 (381)
T ss_pred             ccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhCCEEEcCccccCCHHHHH
Confidence              356655   4688999999987765431100    0011   2334411      11233356789988988766555


Q ss_pred             HHHHHHHHHHHHHhCC
Q 024306          253 MLLSNTLDSAKRAYGF  268 (269)
Q Consensus       253 mLl~n~v~a~~~~~~~  268 (269)
                      ......++++.+|++.
T Consensus       265 r~~~~~~~nl~~~~~~  280 (381)
T PRK00257        265 RGTAQIYQALCRFFGI  280 (381)
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            6666666676777664

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=98.28  E-value=1.5e-05  Score=75.58  Aligned_cols=141  Identities=19%  Similarity=0.247  Sum_probs=96.1

Q ss_pred             HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCCEEEeccCC-C------
Q 024306          127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV-A------  190 (269)
Q Consensus       127 l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~aDiVIsAtg~-p------  190 (269)
                      .++.+.++.||++.|||.|.+ |+.+++.|...|.+|..+++..         .++.+.+++||+|+..++. +      
T Consensus       107 ~r~~g~~L~gktvGIIG~G~I-G~~vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T  185 (378)
T PRK15438        107 AERDGFSLHDRTVGIVGVGNV-GRRLQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKT  185 (378)
T ss_pred             hccCCCCcCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCccccc
Confidence            345678899999999999986 9999999999999999987421         2578889999999977772 2      


Q ss_pred             -CcccCC---CcCCCcEEEEeeecCCCCCCCC-----CC--ceeecccch------HHHhhHcceecccCCcccHHHHHH
Q 024306          191 -NLVRGS---WLKPGAVVLDVGTCPVDDPSCE-----YG--YRLMGDVCY------EEAMRLASVITPVPGGVGPMTVAM  253 (269)
Q Consensus       191 -~~i~~~---~~~~g~vViDv~~~~~~~~~~~-----~~--~~l~GDvd~------~~~~~~~~~~tpvpgGvGp~T~~m  253 (269)
                       ++++.+   .+++|+++|+++..+..+....     .|  ....=||-.      ....+....+||-.+|...=+...
T Consensus       186 ~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~i~TPHiAg~s~e~~~~  265 (378)
T PRK15438        186 LHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVDIGTPHIAGYTLEGKAR  265 (378)
T ss_pred             ccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCCEECCccCcCcHHHHHH
Confidence             346555   3588999999997765432100     01  013345521      012233347899999986655555


Q ss_pred             HHHHHHHHHHHHhCC
Q 024306          254 LLSNTLDSAKRAYGF  268 (269)
Q Consensus       254 Ll~n~v~a~~~~~~~  268 (269)
                      .....++++.+|+|.
T Consensus       266 ~~~~~~~~l~~~~~~  280 (378)
T PRK15438        266 GTTQVFEAYSKFIGH  280 (378)
T ss_pred             HHHHHHHHHHHHHcC
Confidence            555566666666663

>PRK08291 ectoine utilization protein EutC; Validated

Probab=98.19  E-value=4.9e-06  Score=77.44  Aligned_cols=91  Identities=18%  Similarity=0.243  Sum_probs=70.6

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh-CCC-EEEEEeCCC---------------------CCH
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT---------------------KNP  173 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~-~ga-~Vti~~~~t---------------------~~l  173 (269)
                      .+++.+++....-.  ....++++|||+|+. |+..+..|.. ++. +|++++|+.                     .++
T Consensus       115 rT~a~~~~a~~~la--~~~~~~v~IiGaG~~-a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~  191 (330)
T PRK08291        115 RTAAAGAVAARHLA--REDASRAAVIGAGEQ-ARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDV  191 (330)
T ss_pred             HHHHHHHHHHHHhC--CCCCCEEEEECCCHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCH
Confidence            45667777776422  335689999999998 9998888874 554 699998762                     345


Q ss_pred             hhhcCCCCEEEeccCCCCc-ccCCCcCCCcEEEEeeec
Q 024306          174 EQITSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       174 ~~~~~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~~  210 (269)
                      .+.+.+||+||+||+...+ ++.+|+++|+.|..++.+
T Consensus       192 ~~al~~aDiVi~aT~s~~p~i~~~~l~~g~~v~~vg~d  229 (330)
T PRK08291        192 HEAVAGADIIVTTTPSEEPILKAEWLHPGLHVTAMGSD  229 (330)
T ss_pred             HHHHccCCEEEEeeCCCCcEecHHHcCCCceEEeeCCC
Confidence            6778899999999997665 788999999999998865

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.19  E-value=1.8e-05  Score=73.85  Aligned_cols=134  Identities=16%  Similarity=0.158  Sum_probs=87.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCCEEEeccCC-C---CcccC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV-A---NLVRG  195 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~aDiVIsAtg~-p---~~i~~  195 (269)
                      .++.||++.|||.|.+ |+.+|+.|...|++|..+++..            .++.+.+++||+|+.+++. +   +++..
T Consensus       146 ~~L~gktvgIiG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~  224 (333)
T PRK13243        146 YDVYGKTIGIIGFGRI-GQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINE  224 (333)
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCH
Confidence            4689999999999887 9999999999999999987652            2467788999999999984 2   35654


Q ss_pred             C---CcCCCcEEEEeeecCCCCCCC----CCCceeec---ccch-------HHHhhHcceecccCCcccHHHHHHHHHHH
Q 024306          196 S---WLKPGAVVLDVGTCPVDDPSC----EYGYRLMG---DVCY-------EEAMRLASVITPVPGGVGPMTVAMLLSNT  258 (269)
Q Consensus       196 ~---~~~~g~vViDv~~~~~~~~~~----~~~~~l~G---Dvd~-------~~~~~~~~~~tpvpgGvGp~T~~mLl~n~  258 (269)
                      +   .+++|+++|+++.....+...    ...+++-|   ||-.       .-..-..-.+||-.+|.-.-+..-+....
T Consensus       225 ~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~  304 (333)
T PRK13243        225 ERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAREGMAELV  304 (333)
T ss_pred             HHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHHHHHHHHH
Confidence            4   468899999999776543110    00113332   4421       11111234678888876543343444444


Q ss_pred             HHHHHHHh
Q 024306          259 LDSAKRAY  266 (269)
Q Consensus       259 v~a~~~~~  266 (269)
                      ++..++|+
T Consensus       305 ~~ni~~~~  312 (333)
T PRK13243        305 AENLIAFK  312 (333)
T ss_pred             HHHHHHHH
Confidence            44444443

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.18  E-value=2.1e-06  Score=78.52  Aligned_cols=77  Identities=29%  Similarity=0.405  Sum_probs=64.3

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------CCHhhhcCCCCEEEeccC----
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAG----  188 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------~~l~~~~~~aDiVIsAtg----  188 (269)
                      ....+|+|||.|-+ |.-.|+++...||+|+|...+.                     .++++.++.||+||.|+=    
T Consensus       166 V~~~kv~iiGGGvv-gtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga  244 (371)
T COG0686         166 VLPAKVVVLGGGVV-GTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA  244 (371)
T ss_pred             CCCccEEEECCccc-cchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence            46678999998765 9999999999999999997551                     256788999999999883    


Q ss_pred             -CCCcccCCC---cCCCcEEEEeeecC
Q 024306          189 -VANLVRGSW---LKPGAVVLDVGTCP  211 (269)
Q Consensus       189 -~p~~i~~~~---~~~g~vViDv~~~~  211 (269)
                       .|.+++++|   ++||+++||++++.
T Consensus       245 kaPkLvt~e~vk~MkpGsVivDVAiDq  271 (371)
T COG0686         245 KAPKLVTREMVKQMKPGSVIVDVAIDQ  271 (371)
T ss_pred             CCceehhHHHHHhcCCCcEEEEEEEcC
Confidence             366788886   47899999999975

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.13  E-value=1.1e-05  Score=79.12  Aligned_cols=90  Identities=23%  Similarity=0.317  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhCC----------CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------C---
Q 024306          121 KGCIELLIRSGV----------EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------N---  172 (269)
Q Consensus       121 ~g~~~~l~~~~~----------~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~---  172 (269)
                      .|+++....++.          .+.+.+|+|+|+|.+ |..++..+...|+.|+++.++..               +   
T Consensus       139 ~Avi~Aa~~lgr~~~g~~taag~vp~akVlViGaG~i-Gl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e  217 (511)
T TIGR00561       139 RAIIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVA-GLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE  217 (511)
T ss_pred             HHHHHHHHHhhhhcCCceecCCCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccc
Confidence            556666665543          245689999999886 99999999999999999865410               0   


Q ss_pred             -----------------------HhhhcCCCCEEEecc---C--CCCcccCCC---cCCCcEEEEeeecC
Q 024306          173 -----------------------PEQITSEADIVIAAA---G--VANLVRGSW---LKPGAVVLDVGTCP  211 (269)
Q Consensus       173 -----------------------l~~~~~~aDiVIsAt---g--~p~~i~~~~---~~~g~vViDv~~~~  211 (269)
                                             +.+.++++||||+++   |  .|.++++++   +|+|.+|+|++..+
T Consensus       218 ~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~  287 (511)
T TIGR00561       218 EGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQ  287 (511)
T ss_pred             cccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCC
Confidence                                   335578899999999   5  455688886   47899999999865

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.12  E-value=9.8e-06  Score=70.30  Aligned_cols=95  Identities=16%  Similarity=0.171  Sum_probs=67.0

Q ss_pred             cCCHHHHHHHHH----Hh--CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH--------------hhh
Q 024306          117 PCTPKGCIELLI----RS--GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP--------------EQI  176 (269)
Q Consensus       117 p~t~~g~~~~l~----~~--~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l--------------~~~  176 (269)
                      |.|++|+...++    +.  +.+++||+++|+|.|.+ |+.+++.|.+.|++|++++++...+              .+.
T Consensus         3 ~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~v-G~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l   81 (200)
T cd01075           3 PPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKV-GYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEI   81 (200)
T ss_pred             ChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhh
Confidence            568888755554    32  78899999999999975 9999999999999999887653211              122


Q ss_pred             c-CCCCEEEeccCCCCcccCCCcCC--CcEEEEeeecCCC
Q 024306          177 T-SEADIVIAAAGVANLVRGSWLKP--GAVVLDVGTCPVD  213 (269)
Q Consensus       177 ~-~~aDiVIsAtg~p~~i~~~~~~~--g~vViDv~~~~~~  213 (269)
                      . .++|+++.++.. +.++.+.++.  ..+|++-+-+|..
T Consensus        82 ~~~~~Dv~vp~A~~-~~I~~~~~~~l~~~~v~~~AN~~~~  120 (200)
T cd01075          82 YSVDADVFAPCALG-GVINDDTIPQLKAKAIAGAANNQLA  120 (200)
T ss_pred             ccccCCEEEecccc-cccCHHHHHHcCCCEEEECCcCccC
Confidence            2 379999966542 3555555432  4577887776653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK07574 formate dehydrogenase; Provisional

Probab=98.06  E-value=2.6e-05  Score=74.22  Aligned_cols=134  Identities=16%  Similarity=0.204  Sum_probs=90.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCC-C---Ccc
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV-A---NLV  193 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~-p---~~i  193 (269)
                      .++.||+|.|||.|.+ |+.+|+.|...|++|...+++.              .++.+.+++||+|+...+. +   +++
T Consensus       188 ~~L~gktVGIvG~G~I-G~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li  266 (385)
T PRK07574        188 YDLEGMTVGIVGAGRI-GLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLF  266 (385)
T ss_pred             eecCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHh
Confidence            4589999999999996 9999999999999999988652              2567889999999999983 2   356


Q ss_pred             cCC---CcCCCcEEEEeeecCCCCCCC----CCCce---eecccchHH--------HhhHcceecccCCcccHHHHHHHH
Q 024306          194 RGS---WLKPGAVVLDVGTCPVDDPSC----EYGYR---LMGDVCYEE--------AMRLASVITPVPGGVGPMTVAMLL  255 (269)
Q Consensus       194 ~~~---~~~~g~vViDv~~~~~~~~~~----~~~~~---l~GDvd~~~--------~~~~~~~~tpvpgGvGp~T~~mLl  255 (269)
                      +.+   .+|+|+++|+++.-...+...    ...++   ...||-+.+        ..-..-.+||-.+|.-.=+...+.
T Consensus       267 ~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~  346 (385)
T PRK07574        267 DADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYA  346 (385)
T ss_pred             CHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHH
Confidence            654   468899999999765432100    00012   335663211        111244688888887544444444


Q ss_pred             HHHHHHHHHHh
Q 024306          256 SNTLDSAKRAY  266 (269)
Q Consensus       256 ~n~v~a~~~~~  266 (269)
                      ...++..++|+
T Consensus       347 ~~~~~ni~~~~  357 (385)
T PRK07574        347 AGTREILECFF  357 (385)
T ss_pred             HHHHHHHHHHH
Confidence            55555555554

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=98.02  E-value=8.3e-06  Score=70.90  Aligned_cols=113  Identities=19%  Similarity=0.286  Sum_probs=72.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-CCH-----------------hhhcCCCCEEEeccCCCCc-
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KNP-----------------EQITSEADIVIAAAGVANL-  192 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~l-----------------~~~~~~aDiVIsAtg~p~~-  192 (269)
                      ++++||+|+|||+|.+ |...+..|...|+.|+++++.- +.+                 .+.+..+|+||.||+.+.. 
T Consensus         6 l~l~~k~vLVIGgG~v-a~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN   84 (202)
T PRK06718          6 IDLSNKRVVIVGGGKV-AGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVN   84 (202)
T ss_pred             EEcCCCEEEEECCCHH-HHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHH
Confidence            4789999999999986 9999999999999999997542 111                 2357889999999997652 


Q ss_pred             --ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhh---HcceecccCCcccHHHHHHHHHHHHH
Q 024306          193 --VRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMR---LASVITPVPGGVGPMTVAMLLSNTLD  260 (269)
Q Consensus       193 --i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~---~~~~~tpvpgGvGp~T~~mLl~n~v~  260 (269)
                        +.... +.+. ++.++-+|..           +|+-+.++.+   ..-+++  -||-+|..+..|-++.-.
T Consensus        85 ~~i~~~a-~~~~-lvn~~d~~~~-----------~~f~~Pa~~~~g~l~iaIs--T~G~sP~la~~lr~~ie~  142 (202)
T PRK06718         85 EQVKEDL-PENA-LFNVITDAES-----------GNVVFPSALHRGKLTISVS--TDGASPKLAKKIRDELEA  142 (202)
T ss_pred             HHHHHHH-HhCC-cEEECCCCcc-----------CeEEEeeEEEcCCeEEEEE--CCCCChHHHHHHHHHHHH
Confidence              33222 3444 3344433321           1222222111   233444  578899888776555543

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.97  E-value=3.7e-05  Score=71.44  Aligned_cols=75  Identities=17%  Similarity=0.190  Sum_probs=61.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHH-hCCC-EEEEEeCCC---------------------CCHhhhcCCCCEEEeccCCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQ-RHHA-TVSIVHALT---------------------KNPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~-~~ga-~Vti~~~~t---------------------~~l~~~~~~aDiVIsAtg~p  190 (269)
                      ...++++|||+|+. |+..+..+. .+++ +|++++|+.                     .++++.++++|+||++|+.+
T Consensus       125 ~~~~~v~iiGaG~~-a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~  203 (325)
T PRK08618        125 EDAKTLCLIGTGGQ-AKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK  203 (325)
T ss_pred             CCCcEEEEECCcHH-HHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC
Confidence            35789999999998 998887765 4565 599998752                     23566788999999999987


Q ss_pred             Cc-ccCCCcCCCcEEEEeeec
Q 024306          191 NL-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       191 ~~-i~~~~~~~g~vViDv~~~  210 (269)
                      ++ +. +|+++|+.|+-+|.+
T Consensus       204 ~p~i~-~~l~~G~hV~~iGs~  223 (325)
T PRK08618        204 TPVFS-EKLKKGVHINAVGSF  223 (325)
T ss_pred             CcchH-HhcCCCcEEEecCCC
Confidence            76 78 999999999999865

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=97.97  E-value=7.8e-05  Score=69.36  Aligned_cols=135  Identities=18%  Similarity=0.197  Sum_probs=88.6

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHH-hCCCEEEEEeCCC------------CCHhhhcCCCCEEEeccCC-C---Ccc
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQ-RHHATVSIVHALT------------KNPEQITSEADIVIAAAGV-A---NLV  193 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~-~~ga~Vti~~~~t------------~~l~~~~~~aDiVIsAtg~-p---~~i  193 (269)
                      +.++.||++.|||.|.+ |+.+++.|. ..|++|...++..            .++.+.+++||+|+..++. |   ++|
T Consensus       140 g~~L~gktvGIiG~G~I-G~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li  218 (323)
T PRK15409        140 GTDVHHKTLGIVGMGRI-GMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLF  218 (323)
T ss_pred             cCCCCCCEEEEEcccHH-HHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhcc
Confidence            34689999999999997 999999997 8899988776542            2567889999999998883 2   467


Q ss_pred             cCC---CcCCCcEEEEeeecCCCCCCC----CCCceeec---ccchHH-------H-hhHcceecccCCcccHHHHHHHH
Q 024306          194 RGS---WLKPGAVVLDVGTCPVDDPSC----EYGYRLMG---DVCYEE-------A-MRLASVITPVPGGVGPMTVAMLL  255 (269)
Q Consensus       194 ~~~---~~~~g~vViDv~~~~~~~~~~----~~~~~l~G---Dvd~~~-------~-~~~~~~~tpvpgGvGp~T~~mLl  255 (269)
                      ..+   .+|+|+++|.++.-...+...    ...+++.|   ||-..+       + .-..-.+||-.||.-.=+..-+.
T Consensus       219 ~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~  298 (323)
T PRK15409        219 GAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMA  298 (323)
T ss_pred             CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHH
Confidence            665   458899999998776543110    00113433   442111       1 11234678888886544444444


Q ss_pred             HHHHHHHHHHh
Q 024306          256 SNTLDSAKRAY  266 (269)
Q Consensus       256 ~n~v~a~~~~~  266 (269)
                      .+.++..+.|+
T Consensus       299 ~~~~~ni~~~~  309 (323)
T PRK15409        299 ACAVDNLIDAL  309 (323)
T ss_pred             HHHHHHHHHHH
Confidence            55555555554

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=97.96  E-value=0.00013  Score=69.43  Aligned_cols=172  Identities=17%  Similarity=0.304  Sum_probs=119.9

Q ss_pred             hHHHHHHHHHHHHHc-CCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeC-CCCCCCCHHHHHhcCCccccccccc
Q 024306           22 SQTYVRNKIKACEEV-GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQL-PLPQHLDEGKILDAVSLEKDVDGFH   99 (269)
Q Consensus        22 s~~y~~~~~~~~~~~-Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~-Pl~~~~~~~~i~~~i~p~kdvdg~~   99 (269)
                      +.--...|.-.|+++ ||++.-+++... +.+++.+.++.+.  +.+-|||++- =.|+-+   .+...+....++--+|
T Consensus        99 g~pVmeGKa~Lfk~faGid~~pI~ld~~-~~~ei~~~Vkal~--p~FgginLedi~ap~cf---~ie~~lr~~~~IPvFh  172 (432)
T COG0281          99 GKPVMEGKAVLFKAFAGIDVLPIELDVG-TNNEIIEFVKALE--PTFGGINLEDIDAPRCF---AIEERLRYRMNIPVFH  172 (432)
T ss_pred             CcchhhhHHHHHHHhcCCCceeeEeeCC-ChHHHHHHHHHhh--hcCCCcceeecccchhh---HHHHHHhhcCCCCccc
Confidence            333445677777766 599888888776 5788999999997  5799999963 222222   2333444455554443


Q ss_pred             cceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCCC------
Q 024306          100 PLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT------  170 (269)
Q Consensus       100 ~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~t------  170 (269)
                      .--.|-       -   --+..|++..|+-.+.+++..++++.|+|-+ |-+++.+|...|.   .|++|+|.-      
T Consensus       173 DDqqGT-------a---iv~lA~llnalk~~gk~l~d~kiv~~GAGAA-giaia~~l~~~g~~~~~i~~~D~~G~l~~~r  241 (432)
T COG0281         173 DDQQGT-------A---IVTLAALLNALKLTGKKLKDQKIVINGAGAA-GIAIADLLVAAGVKEENIFVVDRKGLLYDGR  241 (432)
T ss_pred             ccccHH-------H---HHHHHHHHHHHHHhCCCccceEEEEeCCcHH-HHHHHHHHHHhCCCcccEEEEecCCcccCCC
Confidence            222221       1   1145788999999999999999999999998 9999999999997   599997651      


Q ss_pred             CC------------------H-hhhcCCCCEEEeccCCCCcccCCCcCC---CcEEEEeeecCC
Q 024306          171 KN------------------P-EQITSEADIVIAAAGVANLVRGSWLKP---GAVVLDVGTCPV  212 (269)
Q Consensus       171 ~~------------------l-~~~~~~aDiVIsAtg~p~~i~~~~~~~---g~vViDv~~~~~  212 (269)
                      .+                  - ...+..+|++|..++. +.+++||++.   +-+|+=++ ||.
T Consensus       242 ~~~~~~~~k~~~a~~~~~~~~~~~~~~~adv~iG~S~~-G~~t~e~V~~Ma~~PiIfala-NP~  303 (432)
T COG0281         242 EDLTMNQKKYAKAIEDTGERTLDLALAGADVLIGVSGV-GAFTEEMVKEMAKHPIIFALA-NPT  303 (432)
T ss_pred             cccccchHHHHHHHhhhccccccccccCCCEEEEcCCC-CCcCHHHHHHhccCCEEeecC-CCC
Confidence            00                  0 2346789999988777 7888888754   56676666 543

>PRK06932 glycerate dehydrogenase; Provisional

Probab=97.94  E-value=2.5e-05  Score=72.36  Aligned_cols=134  Identities=21%  Similarity=0.244  Sum_probs=90.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------CCHhhhcCCCCEEEeccCC----CCcccCCC--
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------KNPEQITSEADIVIAAAGV----ANLVRGSW--  197 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------~~l~~~~~~aDiVIsAtg~----p~~i~~~~--  197 (269)
                      .++.||++.|||.|.+ |+.+|+.|...|++|...++..        .++.+.+++||+|+...+.    .++++.+.  
T Consensus       143 ~~l~gktvgIiG~G~I-G~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~  221 (314)
T PRK06932        143 TDVRGSTLGVFGKGCL-GTEVGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLA  221 (314)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHH
Confidence            3689999999999997 9999999999999988776532        2478899999999998883    34676664  


Q ss_pred             -cCCCcEEEEeeecCCCCCCC----CCCcee---ecccchHH-------Hh-----hHcceecccCCcccHHHHHHHHHH
Q 024306          198 -LKPGAVVLDVGTCPVDDPSC----EYGYRL---MGDVCYEE-------AM-----RLASVITPVPGGVGPMTVAMLLSN  257 (269)
Q Consensus       198 -~~~g~vViDv~~~~~~~~~~----~~~~~l---~GDvd~~~-------~~-----~~~~~~tpvpgGvGp~T~~mLl~n  257 (269)
                       +|+|+++|.++.-...++..    ...+++   .-||-..+       +.     -..-.+||-.+|.-.-+..-+...
T Consensus       222 ~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~  301 (314)
T PRK06932        222 LMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNK  301 (314)
T ss_pred             hCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHH
Confidence             68899999998766543110    001133   33542110       11     123467888888765555555666


Q ss_pred             HHHHHHHHh
Q 024306          258 TLDSAKRAY  266 (269)
Q Consensus       258 ~v~a~~~~~  266 (269)
                      .++..++|+
T Consensus       302 ~~~ni~~~~  310 (314)
T PRK06932        302 VAQNIEEFV  310 (314)
T ss_pred             HHHHHHHHH
Confidence            666655554

>PRK06436 glycerate dehydrogenase; Provisional

Probab=97.93  E-value=2.5e-05  Score=72.03  Aligned_cols=82  Identities=18%  Similarity=0.324  Sum_probs=66.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCCEEEeccCC----CCcccCC--
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV----ANLVRGS--  196 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~aDiVIsAtg~----p~~i~~~--  196 (269)
                      ..+.||++.|||.|.+ |+++|+.|...|++|..++++.         .++.+.+++||+|+...+.    .+++..+  
T Consensus       118 ~~L~gktvgIiG~G~I-G~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l  196 (303)
T PRK06436        118 KLLYNKSLGILGYGGI-GRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKML  196 (303)
T ss_pred             CCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHH
Confidence            4789999999999986 9999999999999999998742         3577889999999999883    2356544  


Q ss_pred             -CcCCCcEEEEeeecCCCC
Q 024306          197 -WLKPGAVVLDVGTCPVDD  214 (269)
Q Consensus       197 -~~~~g~vViDv~~~~~~~  214 (269)
                       .+++|+++|+++.....+
T Consensus       197 ~~mk~ga~lIN~sRG~~vd  215 (303)
T PRK06436        197 SLFRKGLAIINVARADVVD  215 (303)
T ss_pred             hcCCCCeEEEECCCccccC
Confidence             468999999999776543

>PRK06487 glycerate dehydrogenase; Provisional

Probab=97.90  E-value=3.3e-05  Score=71.59  Aligned_cols=134  Identities=16%  Similarity=0.192  Sum_probs=90.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------CCHhhhcCCCCEEEeccCC----CCcccCCC---
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------KNPEQITSEADIVIAAAGV----ANLVRGSW---  197 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------~~l~~~~~~aDiVIsAtg~----p~~i~~~~---  197 (269)
                      .++.||++.|+|.|.+ |+.+|+.|...|++|...++..       .++.+.+++||+|+...+.    .++|+.+.   
T Consensus       144 ~~l~gktvgIiG~G~I-G~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~  222 (317)
T PRK06487        144 VELEGKTLGLLGHGEL-GGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELAL  222 (317)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhc
Confidence            3689999999999997 9999999999999998876542       2578899999999999883    34677664   


Q ss_pred             cCCCcEEEEeeecCCCCCCCC----CCceee---cccchH-------HHh---hHcceecccCCcccHHHHHHHHHHHHH
Q 024306          198 LKPGAVVLDVGTCPVDDPSCE----YGYRLM---GDVCYE-------EAM---RLASVITPVPGGVGPMTVAMLLSNTLD  260 (269)
Q Consensus       198 ~~~g~vViDv~~~~~~~~~~~----~~~~l~---GDvd~~-------~~~---~~~~~~tpvpgGvGp~T~~mLl~n~v~  260 (269)
                      +|+|+++|.++.....++...    ..+++.   =||-..       .+.   -..-.+||-.+|.-.-+..-+....++
T Consensus       223 mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~  302 (317)
T PRK06487        223 MKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAE  302 (317)
T ss_pred             CCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHH
Confidence            588999999987655331100    011332   244211       011   123467888888766555555555555


Q ss_pred             HHHHHh
Q 024306          261 SAKRAY  266 (269)
Q Consensus       261 a~~~~~  266 (269)
                      ..++|+
T Consensus       303 ni~~~~  308 (317)
T PRK06487        303 NARAFF  308 (317)
T ss_pred             HHHHHH
Confidence            555554

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.90  E-value=4.7e-05  Score=74.79  Aligned_cols=90  Identities=23%  Similarity=0.315  Sum_probs=66.5

Q ss_pred             HHHHHHHHHhCC----------CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------C
Q 024306          121 KGCIELLIRSGV----------EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------K  171 (269)
Q Consensus       121 ~g~~~~l~~~~~----------~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~  171 (269)
                      .++++....++.          ...+.+|+|+|+|.+ |..++..+...||+|++++++.                   +
T Consensus       140 ~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~i-GL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e  218 (509)
T PRK09424        140 RAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVA-GLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEE  218 (509)
T ss_pred             HHHHHHHHHhcccCCCceeccCCcCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEecccc
Confidence            566766666653          246999999999987 9999999999999988886541                   0


Q ss_pred             --------------CH--------hhhcCCCCEEEeccCCCC-----cccCCC---cCCCcEEEEeeecC
Q 024306          172 --------------NP--------EQITSEADIVIAAAGVAN-----LVRGSW---LKPGAVVLDVGTCP  211 (269)
Q Consensus       172 --------------~l--------~~~~~~aDiVIsAtg~p~-----~i~~~~---~~~g~vViDv~~~~  211 (269)
                                    +.        .+.++.+|+||+++|.|.     .++.++   +++|.+|+|++.++
T Consensus       219 ~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~  288 (509)
T PRK09424        219 EGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAEN  288 (509)
T ss_pred             ccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCC
Confidence                          10        112357999999999643     455554   58999999999853

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.90  E-value=6.4e-05  Score=69.55  Aligned_cols=76  Identities=25%  Similarity=0.325  Sum_probs=59.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHh-CC-CEEEEEeCCC--------------------CCHhhhcCCCCEEEeccCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQR-HH-ATVSIVHALT--------------------KNPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~-~g-a~Vti~~~~t--------------------~~l~~~~~~aDiVIsAtg~p  190 (269)
                      ....++++|||+|.. |++.+..+.. ++ .+|++++|+.                    .+..+.+++|||||++|+.+
T Consensus       122 ~~~~~~v~iiG~G~~-a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~  200 (314)
T PRK06141        122 RKDASRLLVVGTGRL-ASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST  200 (314)
T ss_pred             CCCCceEEEECCcHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC
Confidence            357899999999997 9999886554 45 4799998862                    23456788999999999977


Q ss_pred             Cc-ccCCCcCCCcEEEEeeec
Q 024306          191 NL-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       191 ~~-i~~~~~~~g~vViDv~~~  210 (269)
                      .+ ++.+|+++|++ ||....
T Consensus       201 ~pvl~~~~l~~g~~-i~~ig~  220 (314)
T PRK06141        201 EPLVRGEWLKPGTH-LDLVGN  220 (314)
T ss_pred             CCEecHHHcCCCCE-EEeeCC
Confidence            66 78899999994 555433

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=97.90  E-value=3.9e-05  Score=70.96  Aligned_cols=134  Identities=23%  Similarity=0.208  Sum_probs=89.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCCEEEeccCC----CCcccCC--
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV----ANLVRGS--  196 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~aDiVIsAtg~----p~~i~~~--  196 (269)
                      .++.||++.|||.|.+ |+.+|+++...|++|..+++..         .++.+.+++||+|+..++.    .++|+.+  
T Consensus       141 ~~L~gktvGIiG~G~I-G~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~  219 (311)
T PRK08410        141 GEIKGKKWGIIGLGTI-GKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKEL  219 (311)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHH
Confidence            4689999999999997 9999999999999999887642         2578889999999998883    3467666  


Q ss_pred             -CcCCCcEEEEeeecCCCCCCC----CCCcee--ecccchHH-------Hhh----HcceecccCCcccHHHHHHHHHHH
Q 024306          197 -WLKPGAVVLDVGTCPVDDPSC----EYGYRL--MGDVCYEE-------AMR----LASVITPVPGGVGPMTVAMLLSNT  258 (269)
Q Consensus       197 -~~~~g~vViDv~~~~~~~~~~----~~~~~l--~GDvd~~~-------~~~----~~~~~tpvpgGvGp~T~~mLl~n~  258 (269)
                       .+|+|+++|.++.....+...    ...+++  .=||-..+       +..    -.-.+||-.||.-.=+..-+....
T Consensus       220 ~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~  299 (311)
T PRK08410        220 KLLKDGAILINVGRGGIVNEKDLAKALDEKDIYAGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKV  299 (311)
T ss_pred             HhCCCCeEEEECCCccccCHHHHHHHHHcCCeEEEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHH
Confidence             468899999988776543210    001132  23442111       111    134678888887554444444445


Q ss_pred             HHHHHHHh
Q 024306          259 LDSAKRAY  266 (269)
Q Consensus       259 v~a~~~~~  266 (269)
                      ++..++|+
T Consensus       300 ~~nl~~~~  307 (311)
T PRK08410        300 KENIKDFL  307 (311)
T ss_pred             HHHHHHHH
Confidence            55555543

>PLN03139 formate dehydrogenase; Provisional

Probab=97.89  E-value=0.00011  Score=69.92  Aligned_cols=134  Identities=16%  Similarity=0.227  Sum_probs=91.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCC-C---Ccc
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV-A---NLV  193 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~-p---~~i  193 (269)
                      .++.||+|.|||.|.+ |+.+++.|...|++|..++++.              .++.+.+++||+|+..++. +   +++
T Consensus       195 ~~L~gktVGIVG~G~I-G~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li  273 (386)
T PLN03139        195 YDLEGKTVGTVGAGRI-GRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMF  273 (386)
T ss_pred             cCCCCCEEEEEeecHH-HHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHh
Confidence            4689999999999996 9999999999999998887641              2577889999999999884 2   256


Q ss_pred             cCC---CcCCCcEEEEeeecCCCCCCC----CCCcee---ecccchHH--------HhhHcceecccCCcccHHHHHHHH
Q 024306          194 RGS---WLKPGAVVLDVGTCPVDDPSC----EYGYRL---MGDVCYEE--------AMRLASVITPVPGGVGPMTVAMLL  255 (269)
Q Consensus       194 ~~~---~~~~g~vViDv~~~~~~~~~~----~~~~~l---~GDvd~~~--------~~~~~~~~tpvpgGvGp~T~~mLl  255 (269)
                      +.+   .+++|+++|+++.....+...    ...+++   ..||-+.+        ..-..-.+||-.+|.-.-+..-+.
T Consensus       274 ~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~  353 (386)
T PLN03139        274 NKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYA  353 (386)
T ss_pred             CHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHH
Confidence            655   468899999999766533110    000133   45663221        111244788888887555555555


Q ss_pred             HHHHHHHHHHh
Q 024306          256 SNTLDSAKRAY  266 (269)
Q Consensus       256 ~n~v~a~~~~~  266 (269)
                      ...++..++|+
T Consensus       354 ~~~~~nl~~~~  364 (386)
T PLN03139        354 AGVKDMLDRYF  364 (386)
T ss_pred             HHHHHHHHHHH
Confidence            55556666664

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=97.87  E-value=0.00017  Score=73.85  Aligned_cols=167  Identities=15%  Similarity=0.197  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHcC-CeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCH---HHHHhcCCcccccccccc
Q 024306           25 YVRNKIKACEEVG-IKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE---GKILDAVSLEKDVDGFHP  100 (269)
Q Consensus        25 y~~~~~~~~~~~G-i~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~---~~i~~~i~p~kdvdg~~~  100 (269)
                      -...|.-.|+.+| |++.-+.+... +.+|+.++++.+-  |++.||++.     .+..   -++++.+...-|+-.+|.
T Consensus        88 v~egK~~l~~~~~gid~~~i~~~~~-d~de~v~~v~~~~--p~~g~i~~E-----D~~~p~~f~i~~~~~~~~~ip~f~D  159 (752)
T PRK07232         88 VMEGKGVLFKKFAGIDVFDIEVDEE-DPDKFIEAVAALE--PTFGGINLE-----DIKAPECFYIEEKLRERMDIPVFHD  159 (752)
T ss_pred             HHHHHHHHHHhhcCCCccccccCCC-CHHHHHHHHHHhC--CCccEEeee-----ecCCchHHHHHHHHHHhcCCCeecc
Confidence            3445777777765 89777777654 6889999998876  788899883     3332   334444333333333322


Q ss_pred             ceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCC--------
Q 024306          101 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHAL--------  169 (269)
Q Consensus       101 ~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~--------  169 (269)
                      -          ..+---.+..|++..++-.+.++++.++++.|+|-+ |..++.+|...|.   ++++|+++        
T Consensus       160 D----------~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaa-g~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~  228 (752)
T PRK07232        160 D----------QHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAA-AIACLNLLVALGAKKENIIVCDSKGVIYKGRT  228 (752)
T ss_pred             c----------cchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHH-HHHHHHHHHHcCCCcccEEEEcCCCeecCCCc
Confidence            1          222112245778889999999999999999999998 9999999999997   59999654        


Q ss_pred             ---------------CCCHhhhcCCCCEEEeccCCCCcccCCCcCC---CcEEEEeeecCC
Q 024306          170 ---------------TKNPEQITSEADIVIAAAGVANLVRGSWLKP---GAVVLDVGTCPV  212 (269)
Q Consensus       170 ---------------t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~---g~vViDv~~~~~  212 (269)
                                     ..+|.+.++.+|++|-..+ |+.++++|++.   .-+|+=++ ||.
T Consensus       229 ~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~s~-~g~~~~~~v~~M~~~piifals-NP~  287 (752)
T PRK07232        229 EGMDEWKAAYAVDTDARTLAEAIEGADVFLGLSA-AGVLTPEMVKSMADNPIIFALA-NPD  287 (752)
T ss_pred             ccccHHHHHHhccCCCCCHHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEecC-CCC
Confidence                           1357899999999997766 88999998864   67787777 553

>PRK12862 malic enzyme; Reviewed

Probab=97.87  E-value=6.7e-05  Score=76.99  Aligned_cols=167  Identities=13%  Similarity=0.189  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHcC-CeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCH---HHHHhcCCcccccccccc
Q 024306           25 YVRNKIKACEEVG-IKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE---GKILDAVSLEKDVDGFHP  100 (269)
Q Consensus        25 y~~~~~~~~~~~G-i~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~---~~i~~~i~p~kdvdg~~~  100 (269)
                      -...|.-.|+.+| |++.-+.+... +++++.++++.+.  |++.||++     |.+..   -++++.+...-|+-.+|.
T Consensus        96 v~egK~~l~~~~~gi~~~~i~~~~~-d~d~~v~~v~~~~--p~f~~i~~-----ED~~~~~~f~i~~~~~~~~~ip~f~D  167 (763)
T PRK12862         96 VMEGKAVLFKKFAGIDVFDIELDES-DPDKLVEIVAALE--PTFGGINL-----EDIKAPECFYIERELRERMKIPVFHD  167 (763)
T ss_pred             hHHHHHHHHHhhcCCCccccccCCC-CHHHHHHHHHHhC--CCcceeee-----ecccCchHHHHHHHHHhcCCCceEec
Confidence            3445666677665 89777777654 7899999998887  78889887     33332   344444433333333322


Q ss_pred             ceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCC--------
Q 024306          101 LNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHAL--------  169 (269)
Q Consensus       101 ~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~--------  169 (269)
                                +..+---.+..|++..++-.+.++++.++++.|+|.+ |..++.+|...|.   ++++|+++        
T Consensus       168 ----------D~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaa-g~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~  236 (763)
T PRK12862        168 ----------DQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAA-ALACLDLLVSLGVKRENIWVTDIKGVVYEGRT  236 (763)
T ss_pred             ----------CcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHH-HHHHHHHHHHcCCCcccEEEEcCCCeeeCCCC
Confidence                      1222112355778899999999999999999999998 9999999999997   59999743        


Q ss_pred             ---------------CCCHhhhcCCCCEEEeccCCCCcccCCCcCC---CcEEEEeeecCC
Q 024306          170 ---------------TKNPEQITSEADIVIAAAGVANLVRGSWLKP---GAVVLDVGTCPV  212 (269)
Q Consensus       170 ---------------t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~---g~vViDv~~~~~  212 (269)
                                     ..+|.+.++.+|++|-..+ |+.++++|++.   .-+|+=++ ||.
T Consensus       237 ~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~s~-~g~~~~~~v~~M~~~piifals-NP~  295 (763)
T PRK12862        237 ELMDPWKARYAQKTDARTLAEVIEGADVFLGLSA-AGVLKPEMVKKMAPRPLIFALA-NPT  295 (763)
T ss_pred             ccccHHHHHHhhhcccCCHHHHHcCCCEEEEcCC-CCCCCHHHHHHhccCCEEEeCC-CCc
Confidence                           1357889999999998777 88999998764   67787777 553

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=97.86  E-value=2.7e-05  Score=71.20  Aligned_cols=81  Identities=27%  Similarity=0.414  Sum_probs=67.6

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEeccCCCCcccCC
Q 024306          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLVRGS  196 (269)
Q Consensus       130 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIsAtg~p~~i~~~  196 (269)
                      ...-+.||.++|.|.|.. |+..|+.|...|+.|+|..-..             -.+.+.++++||+|++||..+.|..+
T Consensus       208 TDvM~aGKv~Vv~GYGdV-GKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtTGc~dii~~~  286 (434)
T KOG1370|consen  208 TDVMIAGKVAVVCGYGDV-GKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTTGCKDIITGE  286 (434)
T ss_pred             hhheecccEEEEeccCcc-chhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEccCCcchhhHH
Confidence            345679999999999995 9999999999999999885432             24678999999999999988888777


Q ss_pred             Cc---CCCcEEEEeeecC
Q 024306          197 WL---KPGAVVLDVGTCP  211 (269)
Q Consensus       197 ~~---~~g~vViDv~~~~  211 (269)
                      +|   +++++|..+|+.-
T Consensus       287 H~~~mk~d~IvCN~Ghfd  304 (434)
T KOG1370|consen  287 HFDQMKNDAIVCNIGHFD  304 (434)
T ss_pred             HHHhCcCCcEEecccccc
Confidence            54   6789999998753

>PRK08605 D-lactate dehydrogenase; Validated

Probab=97.86  E-value=4.1e-05  Score=71.43  Aligned_cols=80  Identities=23%  Similarity=0.293  Sum_probs=63.8

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHH-HhCCCEEEEEeCCC-----------CCHhhhcCCCCEEEeccCC----CCcccC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLL-QRHHATVSIVHALT-----------KNPEQITSEADIVIAAAGV----ANLVRG  195 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L-~~~ga~Vti~~~~t-----------~~l~~~~~~aDiVIsAtg~----p~~i~~  195 (269)
                      .++.|++|.|||.|.+ |+++|+.| ...|++|+..+++.           .++.+.+++||+|+.+++.    .+++..
T Consensus       142 ~~l~g~~VgIIG~G~I-G~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~  220 (332)
T PRK08605        142 RSIKDLKVAVIGTGRI-GLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNA  220 (332)
T ss_pred             ceeCCCEEEEECCCHH-HHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCH
Confidence            4688999999999886 99999999 56788998887542           3677889999999999884    234543


Q ss_pred             ---CCcCCCcEEEEeeecCC
Q 024306          196 ---SWLKPGAVVLDVGTCPV  212 (269)
Q Consensus       196 ---~~~~~g~vViDv~~~~~  212 (269)
                         +.+++|+++||++.-..
T Consensus       221 ~~l~~mk~gailIN~sRG~~  240 (332)
T PRK08605        221 DLFKHFKKGAVFVNCARGSL  240 (332)
T ss_pred             HHHhcCCCCcEEEECCCCcc
Confidence               35689999999997654

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.84  E-value=0.0001  Score=68.03  Aligned_cols=77  Identities=16%  Similarity=0.137  Sum_probs=62.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHh-CCC-EEEEEeCCC-------------------CCHhhhcCCCCEEEeccCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT-------------------KNPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~-~ga-~Vti~~~~t-------------------~~l~~~~~~aDiVIsAtg~p  190 (269)
                      -....++++|||+|+. |+..+.++.. ++. +|.+++|+.                   .++.+.+.+||+||++|+.+
T Consensus       121 a~~~~~~v~IiGaG~q-a~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~  199 (304)
T PRK07340        121 APAPPGDLLLIGTGVQ-ARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR  199 (304)
T ss_pred             CCCCCCEEEEECCcHH-HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC
Confidence            3457899999999997 9999999865 564 699998762                   24567889999999999987


Q ss_pred             Cc-ccCCCcCCCcEEEEeeec
Q 024306          191 NL-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       191 ~~-i~~~~~~~g~vViDv~~~  210 (269)
                      ++ ++. |++||+.|.=+|.+
T Consensus       200 ~Pl~~~-~~~~g~hi~~iGs~  219 (304)
T PRK07340        200 TPVYPE-AARAGRLVVAVGAF  219 (304)
T ss_pred             CceeCc-cCCCCCEEEecCCC
Confidence            76 665 79999999999865

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=97.84  E-value=4.1e-05  Score=70.86  Aligned_cols=82  Identities=12%  Similarity=0.075  Sum_probs=66.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCCEEEeccCC-C---CcccC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV-A---NLVRG  195 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~aDiVIsAtg~-p---~~i~~  195 (269)
                      ..++||++.|||.|.+ |+.+|+.|...|++|+..+++.            .++.+.+++||+|+...+. +   +++..
T Consensus       132 ~~l~g~tvgIvG~G~I-G~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~  210 (312)
T PRK15469        132 YHREDFTIGILGAGVL-GSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQ  210 (312)
T ss_pred             CCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHH
Confidence            4689999999999997 9999999999999998887542            2467889999999999884 2   24554


Q ss_pred             C---CcCCCcEEEEeeecCCCC
Q 024306          196 S---WLKPGAVVLDVGTCPVDD  214 (269)
Q Consensus       196 ~---~~~~g~vViDv~~~~~~~  214 (269)
                      +   .+++|+++|+++--..-+
T Consensus       211 ~~l~~mk~ga~lIN~aRG~vVd  232 (312)
T PRK15469        211 QLLEQLPDGAYLLNLARGVHVV  232 (312)
T ss_pred             HHHhcCCCCcEEEECCCccccC
Confidence            4   468899999999776543

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.83  E-value=1.1e-05  Score=67.83  Aligned_cols=78  Identities=24%  Similarity=0.334  Sum_probs=56.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC----------------C------------------------CC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------T------------------------KN  172 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------t------------------------~~  172 (269)
                      .+...+|+|+|+|.+ |+.++.+|...|++|++.+..                +                        ..
T Consensus        17 ~~~p~~vvv~G~G~v-g~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
T PF01262_consen   17 GVPPAKVVVTGAGRV-GQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN   95 (168)
T ss_dssp             EE-T-EEEEESTSHH-HHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred             CCCCeEEEEECCCHH-HHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence            356789999999886 999999999999999998643                1                        12


Q ss_pred             HhhhcCCCCEEEeccC-----CCCcccCCC---cCCCcEEEEeeecC
Q 024306          173 PEQITSEADIVIAAAG-----VANLVRGSW---LKPGAVVLDVGTCP  211 (269)
Q Consensus       173 l~~~~~~aDiVIsAtg-----~p~~i~~~~---~~~g~vViDv~~~~  211 (269)
                      +.+.++.+|+||++.-     .|.+++.++   ++++.+|+|+..+.
T Consensus        96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~  142 (168)
T PF01262_consen   96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQ  142 (168)
T ss_dssp             HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGG
T ss_pred             HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecC
Confidence            4567888999996553     366788886   47899999999864

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.81  E-value=6.3e-05  Score=70.15  Aligned_cols=81  Identities=20%  Similarity=0.300  Sum_probs=65.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------CCHhhhcCCCCEEEeccCCC----CcccCC-
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------KNPEQITSEADIVIAAAGVA----NLVRGS-  196 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------~~l~~~~~~aDiVIsAtg~p----~~i~~~-  196 (269)
                      ..+.|+++.|||.|.+ |+++|..|...|++|+.++++.          .++.+.+++||+|+.+++..    +.+..+ 
T Consensus       142 ~~l~g~~VgIIG~G~I-G~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~  220 (330)
T PRK12480        142 KPVKNMTVAIIGTGRI-GAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAM  220 (330)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHH
Confidence            3689999999999996 9999999999999999987652          25778899999999999843    234433 


Q ss_pred             --CcCCCcEEEEeeecCCC
Q 024306          197 --WLKPGAVVLDVGTCPVD  213 (269)
Q Consensus       197 --~~~~g~vViDv~~~~~~  213 (269)
                        .+++|+++|+++.-...
T Consensus       221 l~~mk~gavlIN~aRG~~v  239 (330)
T PRK12480        221 FDHVKKGAILVNAARGAVI  239 (330)
T ss_pred             HhcCCCCcEEEEcCCcccc
Confidence              35789999999876553

>PLN02306 hydroxypyruvate reductase

Probab=97.77  E-value=6.4e-05  Score=71.56  Aligned_cols=134  Identities=16%  Similarity=0.165  Sum_probs=86.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHH-hCCCEEEEEeCCC----------------------------CCHhhhcCCCCE
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQ-RHHATVSIVHALT----------------------------KNPEQITSEADI  182 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~-~~ga~Vti~~~~t----------------------------~~l~~~~~~aDi  182 (269)
                      .++.||++.|||.|.+ |+.+|++|. ..|++|...++..                            .++.+.+++||+
T Consensus       161 ~~L~gktvGIiG~G~I-G~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDi  239 (386)
T PLN02306        161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADV  239 (386)
T ss_pred             cCCCCCEEEEECCCHH-HHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCE
Confidence            4689999999999997 999999985 8899998776431                            267888999999


Q ss_pred             EEeccCC----CCcccCC---CcCCCcEEEEeeecCCCCCCCC----CCceee---cccchH------HHhh-Hcceecc
Q 024306          183 VIAAAGV----ANLVRGS---WLKPGAVVLDVGTCPVDDPSCE----YGYRLM---GDVCYE------EAMR-LASVITP  241 (269)
Q Consensus       183 VIsAtg~----p~~i~~~---~~~~g~vViDv~~~~~~~~~~~----~~~~l~---GDvd~~------~~~~-~~~~~tp  241 (269)
                      |+..++.    .++|+.+   ++|+|+++|+++.-..-+....    ..+++.   =||-..      .+.+ ..-.+||
T Consensus       240 V~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTP  319 (386)
T PLN02306        240 ISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVP  319 (386)
T ss_pred             EEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECC
Confidence            9988773    3467666   4688999999997655331100    001232   244111      1111 2346788


Q ss_pred             cCCcccHHHHHHHHHHHHHHHHHHh
Q 024306          242 VPGGVGPMTVAMLLSNTLDSAKRAY  266 (269)
Q Consensus       242 vpgGvGp~T~~mLl~n~v~a~~~~~  266 (269)
                      -.+|.-.-+..-+....++..++|+
T Consensus       320 Hiag~T~e~~~~~~~~~~~ni~~~~  344 (386)
T PLN02306        320 HIASASKWTREGMATLAALNVLGKL  344 (386)
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHHH
Confidence            8787654444444444444444443

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.76  E-value=4.1e-05  Score=64.00  Aligned_cols=74  Identities=22%  Similarity=0.342  Sum_probs=54.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCC----c-cc---
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----L-VR---  194 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~----~-i~---  194 (269)
                      ++|-+||.|.+ |++++..|.+.|.+|++.+++.              .++.+.++++|+||++++.+.    . ..   
T Consensus         2 ~~Ig~IGlG~m-G~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i   80 (163)
T PF03446_consen    2 MKIGFIGLGNM-GSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI   80 (163)
T ss_dssp             BEEEEE--SHH-HHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred             CEEEEEchHHH-HHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence            57999999987 9999999999999999999873              356788899999999998633    2 23   


Q ss_pred             CCCcCCCcEEEEeeecC
Q 024306          195 GSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       195 ~~~~~~g~vViDv~~~~  211 (269)
                      ...+++|.++||+....
T Consensus        81 ~~~l~~g~iiid~sT~~   97 (163)
T PF03446_consen   81 LAGLRPGKIIIDMSTIS   97 (163)
T ss_dssp             GGGS-TTEEEEE-SS--
T ss_pred             hhccccceEEEecCCcc
Confidence            24467899999998653

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=97.75  E-value=6.8e-05  Score=69.79  Aligned_cols=135  Identities=22%  Similarity=0.274  Sum_probs=91.1

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEeccCC----CCcc
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV----ANLV  193 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIsAtg~----p~~i  193 (269)
                      +.++.||++-|||.|.+ |+.++..|...|.+|...++..             .++.+.+++||+|+.-++.    .+++
T Consensus       137 g~el~gkTvGIiG~G~I-G~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i  215 (324)
T COG0111         137 GTELAGKTVGIIGLGRI-GRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLI  215 (324)
T ss_pred             cccccCCEEEEECCCHH-HHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhccc
Confidence            45788999999999997 9999999999999999998732             3588999999999998883    3467


Q ss_pred             cCCC---cCCCcEEEEeeecCCCCCCC----CCCceee---cccchHH-------Hhh-HcceecccCCcccHHHHHHHH
Q 024306          194 RGSW---LKPGAVVLDVGTCPVDDPSC----EYGYRLM---GDVCYEE-------AMR-LASVITPVPGGVGPMTVAMLL  255 (269)
Q Consensus       194 ~~~~---~~~g~vViDv~~~~~~~~~~----~~~~~l~---GDvd~~~-------~~~-~~~~~tpvpgGvGp~T~~mLl  255 (269)
                      +.+.   +|+|+++|.++.-...+...    ...+++-   =||-..+       +.+ -.-.+||-.||.-.-+...+.
T Consensus       216 ~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~  295 (324)
T COG0111         216 NAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVA  295 (324)
T ss_pred             CHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHH
Confidence            6653   58899999888665432100    0001221   1221111       111 133468888988665556666


Q ss_pred             HHHHHHHHHHh
Q 024306          256 SNTLDSAKRAY  266 (269)
Q Consensus       256 ~n~v~a~~~~~  266 (269)
                      .+.++...+|+
T Consensus       296 ~~~~~~i~~~l  306 (324)
T COG0111         296 EIVAENIVRYL  306 (324)
T ss_pred             HHHHHHHHHHH
Confidence            66666666554

>PRK12861 malic enzyme; Reviewed

Probab=97.71  E-value=8.4e-05  Score=76.00  Aligned_cols=166  Identities=14%  Similarity=0.202  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHcC-CeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHH---HHHhcCCccccccccccc
Q 024306           26 VRNKIKACEEVG-IKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG---KILDAVSLEKDVDGFHPL  101 (269)
Q Consensus        26 ~~~~~~~~~~~G-i~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~---~i~~~i~p~kdvdg~~~~  101 (269)
                      ...|.-.|+++| |++.-+....+ ++++|.+.++.+..  .+-||++     +.+...   ++++.+...-++-.||.-
T Consensus        93 meGK~~L~~~~agid~~di~~~~~-dpd~~v~~v~a~~~--~fg~i~l-----ED~~~p~~f~il~~~~~~~~ipvf~DD  164 (764)
T PRK12861         93 MEGKAVLFKKFAGIDVFDIEINET-DPDKLVDIIAGLEP--TFGGINL-----EDIKAPECFTVERKLRERMKIPVFHDD  164 (764)
T ss_pred             HHHHHHHHhhccCCCccccccCCC-CHHHHHHHHHHHHh--hcCCcee-----eeccCchHHHHHHHHHhcCCCCeeccc
Confidence            445667777765 89777777653 68999988888874  6888776     333333   333333222133333321


Q ss_pred             eecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCC---------
Q 024306          102 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHAL---------  169 (269)
Q Consensus       102 n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~---------  169 (269)
                                ..+---.+..|++..++-.+.++++.++++.|+|-+ |.+++.+|...|.   ++++|+++         
T Consensus       165 ----------~qGTa~v~lA~llnal~~~gk~l~d~~iv~~GAGaA-g~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~  233 (764)
T PRK12861        165 ----------QHGTAITVSAAFINGLKVVGKSIKEVKVVTSGAGAA-ALACLDLLVDLGLPVENIWVTDIEGVVYRGRTT  233 (764)
T ss_pred             ----------cchHHHHHHHHHHHHHHHhCCChhHcEEEEECHhHH-HHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcc
Confidence                      222111245778889999999999999999999998 9999999999998   59999743         


Q ss_pred             --------------CCCHhhhcCCCCEEEeccCCCCcccCCCcCC---CcEEEEeeecCC
Q 024306          170 --------------TKNPEQITSEADIVIAAAGVANLVRGSWLKP---GAVVLDVGTCPV  212 (269)
Q Consensus       170 --------------t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~---g~vViDv~~~~~  212 (269)
                                    ..+|.+.++.+|++|-..+ |+.+++||++.   .-+|+=++ ||.
T Consensus       234 ~l~~~k~~~a~~~~~~~L~eai~~advliG~S~-~g~ft~e~v~~Ma~~PIIFaLs-NPt  291 (764)
T PRK12861        234 LMDPDKERFAQETDARTLAEVIGGADVFLGLSA-GGVLKAEMLKAMAARPLILALA-NPT  291 (764)
T ss_pred             cCCHHHHHHHhhcCCCCHHHHHhcCCEEEEcCC-CCCCCHHHHHHhccCCEEEECC-CCC
Confidence                          1357889999999997765 88999998864   67887777 554

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.69  E-value=6.3e-05  Score=58.25  Aligned_cols=59  Identities=24%  Similarity=0.356  Sum_probs=45.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------CCHhhhcCCCCEEEeccCCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------KNPEQITSEADIVIAAAGVAN  191 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------~~l~~~~~~aDiVIsAtg~p~  191 (269)
                      ++++|++|+|||.|.. |..-++.|.+.||+|+++....           ..+++.+..+|+||.||+.+.
T Consensus         3 l~l~~~~vlVvGgG~v-a~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~   72 (103)
T PF13241_consen    3 LDLKGKRVLVVGGGPV-AARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDDPE   72 (103)
T ss_dssp             E--TT-EEEEEEESHH-HHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS-HH
T ss_pred             EEcCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCCHH
Confidence            4689999999999996 9999999999999999997762           234567889999999998654

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.64  E-value=0.00015  Score=69.56  Aligned_cols=80  Identities=23%  Similarity=0.370  Sum_probs=66.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------CCHhhhcCCCCEEEeccCC----CCcccCC-
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------KNPEQITSEADIVIAAAGV----ANLVRGS-  196 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------~~l~~~~~~aDiVIsAtg~----p~~i~~~-  196 (269)
                      .++.||++.|||.|.+ |+.+|+.|...|++|..+++..          .++.+.+++||+|+...+.    -++++.+ 
T Consensus       147 ~~L~gktvGIiG~G~I-G~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~  225 (409)
T PRK11790        147 FEVRGKTLGIVGYGHI-GTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEE  225 (409)
T ss_pred             ccCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHH
Confidence            5689999999999997 9999999999999999887642          2678899999999998883    2367655 


Q ss_pred             --CcCCCcEEEEeeecCC
Q 024306          197 --WLKPGAVVLDVGTCPV  212 (269)
Q Consensus       197 --~~~~g~vViDv~~~~~  212 (269)
                        .+|+|+++|+++....
T Consensus       226 l~~mk~ga~lIN~aRG~~  243 (409)
T PRK11790        226 LALMKPGAILINASRGTV  243 (409)
T ss_pred             HhcCCCCeEEEECCCCcc
Confidence              4688999999995544

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=97.62  E-value=0.00017  Score=71.32  Aligned_cols=82  Identities=18%  Similarity=0.289  Sum_probs=66.8

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEeccCC----CCcc
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV----ANLV  193 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIsAtg~----p~~i  193 (269)
                      +.++.||++.|||.|.+ |+.+|+.|...|++|..+++..             .++.+.+++||+|+..++.    .+++
T Consensus       133 g~~l~gktvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li  211 (525)
T TIGR01327       133 GTELYGKTLGVIGLGRI-GSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLI  211 (525)
T ss_pred             ccccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCc
Confidence            35689999999999997 9999999999999999987631             2578889999999999883    2356


Q ss_pred             cCC---CcCCCcEEEEeeecCCC
Q 024306          194 RGS---WLKPGAVVLDVGTCPVD  213 (269)
Q Consensus       194 ~~~---~~~~g~vViDv~~~~~~  213 (269)
                      ..+   .+++|+++|+++.....
T Consensus       212 ~~~~l~~mk~ga~lIN~aRG~~v  234 (525)
T TIGR01327       212 GAEELAKMKKGVIIVNCARGGII  234 (525)
T ss_pred             CHHHHhcCCCCeEEEEcCCCcee
Confidence            544   46889999999977653

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.58  E-value=0.00019  Score=70.97  Aligned_cols=81  Identities=19%  Similarity=0.286  Sum_probs=66.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCCEEEeccCC----CCcccC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV----ANLVRG  195 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~aDiVIsAtg~----p~~i~~  195 (269)
                      .++.||++.|||.|.+ |+.+|+.|...|++|..+++..            .++.+.+++||+|+.+++.    .+++..
T Consensus       136 ~~l~gktvgIiG~G~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~  214 (526)
T PRK13581        136 VELYGKTLGIIGLGRI-GSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGA  214 (526)
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCH
Confidence            4688999999999996 9999999999999999988642            1467889999999999984    235655


Q ss_pred             C---CcCCCcEEEEeeecCCC
Q 024306          196 S---WLKPGAVVLDVGTCPVD  213 (269)
Q Consensus       196 ~---~~~~g~vViDv~~~~~~  213 (269)
                      +   .+++|+++|+++.....
T Consensus       215 ~~l~~mk~ga~lIN~aRG~~v  235 (526)
T PRK13581        215 EELAKMKPGVRIINCARGGII  235 (526)
T ss_pred             HHHhcCCCCeEEEECCCCcee
Confidence            4   46889999999876553

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.58  E-value=0.00015  Score=68.82  Aligned_cols=112  Identities=21%  Similarity=0.229  Sum_probs=78.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC------------------------CCHhhhcCCCCEEEeccCCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT------------------------KNPEQITSEADIVIAAAGVAN  191 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t------------------------~~l~~~~~~aDiVIsAtg~p~  191 (269)
                      ++|+|||+|++ |+++|+.|++++ .+|++..|+.                        +.+.+.+++.|+|||+.+-..
T Consensus         2 ~~ilviGaG~V-g~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~   80 (389)
T COG1748           2 MKILVIGAGGV-GSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV   80 (389)
T ss_pred             CcEEEECCchh-HHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh
Confidence            68999999885 999999999999 7899998871                        235678899999999988543


Q ss_pred             c--ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCC-cccHHHHHHHHHHHHHHH
Q 024306          192 L--VRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPG-GVGPMTVAMLLSNTLDSA  262 (269)
Q Consensus       192 ~--i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpg-GvGp~T~~mLl~n~v~a~  262 (269)
                      -  +-...++-|.-++|+.+.+...            -+++..+++++ +|-+++ |+.|=-+..+....++-+
T Consensus        81 ~~~i~ka~i~~gv~yvDts~~~~~~------------~~~~~~a~~Ag-it~v~~~G~dPGi~nv~a~~a~~~~  141 (389)
T COG1748          81 DLTILKACIKTGVDYVDTSYYEEPP------------WKLDEEAKKAG-ITAVLGCGFDPGITNVLAAYAAKEL  141 (389)
T ss_pred             hHHHHHHHHHhCCCEEEcccCCchh------------hhhhHHHHHcC-eEEEcccCcCcchHHHHHHHHHHHh
Confidence            2  3344567789999999876421            11234466677 233432 455555667776666544

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.53  E-value=0.00015  Score=60.55  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=70.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-CCH--------------hhhcCCCCEEEeccCCCCc--cc
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KNP--------------EQITSEADIVIAAAGVANL--VR  194 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~l--------------~~~~~~aDiVIsAtg~p~~--i~  194 (269)
                      ++++|++|+|+|+|.+ |.-.+..|.+.|++|+++...- +++              .+.+.++|+||.||+.+..  .-
T Consensus         9 l~l~~~~vlVvGGG~v-a~rka~~Ll~~ga~V~VIsp~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~i   87 (157)
T PRK06719          9 FNLHNKVVVIIGGGKI-AYRKASGLKDTGAFVTVVSPEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMMV   87 (157)
T ss_pred             EEcCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHHHHHHH
Confidence            5789999999999886 9999999999999999985431 111              1347889999999986542  11


Q ss_pred             CCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHh---hHcceecccCCcccHHHHHHHHHHHHHHH
Q 024306          195 GSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAM---RLASVITPVPGGVGPMTVAMLLSNTLDSA  262 (269)
Q Consensus       195 ~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~---~~~~~~tpvpgGvGp~T~~mLl~n~v~a~  262 (269)
                      ...-+... .+.+.-+|..           +|+-+.+..   +..-+++  -+|-+|.....|=++.-..+
T Consensus        88 ~~~a~~~~-~vn~~d~~~~-----------~~f~~pa~v~~~~l~iais--T~G~sP~la~~lr~~ie~~l  144 (157)
T PRK06719         88 KQAAHDFQ-WVNVVSDGTE-----------SSFHTPGVIRNDEYVVTIS--TSGKDPSFTKRLKQELTSIL  144 (157)
T ss_pred             HHHHHHCC-cEEECCCCCc-----------CcEEeeeEEEECCeEEEEE--CCCcChHHHHHHHHHHHHHh
Confidence            11112232 3333333321           111122211   1223444  57889988888766655444

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=97.50  E-value=0.00027  Score=65.80  Aligned_cols=82  Identities=21%  Similarity=0.347  Sum_probs=67.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------CHhhhcCCCCEEEeccCC----CCcccC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGV----ANLVRG  195 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------~l~~~~~~aDiVIsAtg~----p~~i~~  195 (269)
                      .+++||++-|||.|.+ |+++|+.+...|++|...+++..            ++.+.+++||+|+-..|.    -|+|..
T Consensus       142 ~~l~gktvGIiG~GrI-G~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~  220 (324)
T COG1052         142 FDLRGKTLGIIGLGRI-GQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINA  220 (324)
T ss_pred             cCCCCCEEEEECCCHH-HHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCH
Confidence            5789999999999997 99999999989999999987631            367889999999988883    346776


Q ss_pred             CC---cCCCcEEEEeeecCCCC
Q 024306          196 SW---LKPGAVVLDVGTCPVDD  214 (269)
Q Consensus       196 ~~---~~~g~vViDv~~~~~~~  214 (269)
                      +.   +|+|+++|.++.-...+
T Consensus       221 ~~l~~mk~ga~lVNtaRG~~VD  242 (324)
T COG1052         221 EELAKMKPGAILVNTARGGLVD  242 (324)
T ss_pred             HHHHhCCCCeEEEECCCccccC
Confidence            64   68899999988765543

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.46  E-value=0.00035  Score=63.91  Aligned_cols=73  Identities=29%  Similarity=0.412  Sum_probs=58.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------CCHhhhcCCCCEEEeccCCCC-----cccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------KNPEQITSEADIVIAAAGVAN-----LVRGS  196 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------~~l~~~~~~aDiVIsAtg~p~-----~i~~~  196 (269)
                      .+|.+||-|.+ |.|+|..|.+.|.+|++++|+.               .+..+..++||+||+.++.+.     ++.++
T Consensus         1 ~kIafIGLG~M-G~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~   79 (286)
T COG2084           1 MKIAFIGLGIM-GSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGEN   79 (286)
T ss_pred             CeEEEEcCchh-hHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCcc
Confidence            36899999997 9999999999999999999883               234578899999999998532     23323


Q ss_pred             ----CcCCCcEEEEeeec
Q 024306          197 ----WLKPGAVVLDVGTC  210 (269)
Q Consensus       197 ----~~~~g~vViDv~~~  210 (269)
                          .+++|.++||+...
T Consensus        80 g~~~~~~~G~i~IDmSTi   97 (286)
T COG2084          80 GLLEGLKPGAIVIDMSTI   97 (286)
T ss_pred             chhhcCCCCCEEEECCCC
Confidence                35689999999865

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.44  E-value=0.00032  Score=64.52  Aligned_cols=73  Identities=15%  Similarity=0.263  Sum_probs=58.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-CCHhhhcCCCCEEEeccCCCC---c---ccCCCcCCCcEEEEe
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KNPEQITSEADIVIAAAGVAN---L---VRGSWLKPGAVVLDV  207 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~l~~~~~~aDiVIsAtg~p~---~---i~~~~~~~g~vViDv  207 (269)
                      .+++|.|||.|.. |.+++..|.+.|.+|++.+|+. .++.+.++++|+||.+++...   .   +....++++.+++|+
T Consensus         3 ~~m~I~iiG~G~~-G~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~   81 (308)
T PRK14619          3 QPKTIAILGAGAW-GSTLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTA   81 (308)
T ss_pred             CCCEEEEECccHH-HHHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEe
Confidence            4578999999886 9999999999999999998864 567888899999999998632   1   222235678899997


Q ss_pred             e
Q 024306          208 G  208 (269)
Q Consensus       208 ~  208 (269)
                      .
T Consensus        82 s   82 (308)
T PRK14619         82 T   82 (308)
T ss_pred             C
Confidence            5

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.40  E-value=0.00028  Score=58.67  Aligned_cols=69  Identities=26%  Similarity=0.388  Sum_probs=49.9

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC----------------------------CCCHhhhcCCCCEEEeccCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------------TKNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------------t~~l~~~~~~aDiVIsAtg~  189 (269)
                      +|+|+|+|.. |.++|..|+.+|.+|++..+.                            +.++++.+++||+||-+++.
T Consensus         1 KI~ViGaG~~-G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs   79 (157)
T PF01210_consen    1 KIAVIGAGNW-GTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS   79 (157)
T ss_dssp             EEEEESSSHH-HHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G
T ss_pred             CEEEECcCHH-HHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH
Confidence            6899999997 999999999999999999654                            24778899999999999996


Q ss_pred             CC---cc--cCCCcCCCcEEEEe
Q 024306          190 AN---LV--RGSWLKPGAVVLDV  207 (269)
Q Consensus       190 p~---~i--~~~~~~~g~vViDv  207 (269)
                      ..   ++  =..++++++.++=+
T Consensus        80 ~~~~~~~~~l~~~l~~~~~ii~~  102 (157)
T PF01210_consen   80 QAHREVLEQLAPYLKKGQIIISA  102 (157)
T ss_dssp             GGHHHHHHHHTTTSHTT-EEEET
T ss_pred             HHHHHHHHHHhhccCCCCEEEEe
Confidence            32   11  12244667766543

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.38  E-value=0.00035  Score=66.26  Aligned_cols=73  Identities=18%  Similarity=0.299  Sum_probs=58.2

Q ss_pred             ccceEEEEc-CCcccHHHHHHHHHhCCCEEEEEeCCC-CCHhhhcCCCCEEEeccCCCC---cc---cCCCcCCCcEEEE
Q 024306          135 MGKNAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALT-KNPEQITSEADIVIAAAGVAN---LV---RGSWLKPGAVVLD  206 (269)
Q Consensus       135 ~gk~v~ViG-~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~l~~~~~~aDiVIsAtg~p~---~i---~~~~~~~g~vViD  206 (269)
                      ..++|+||| .|.+ |..++..|.+.|.+|+++++.. .+..+.+++||+||.|++...   .+   .+  ++++++|+|
T Consensus        97 ~~~~I~IiGG~Glm-G~slA~~l~~~G~~V~~~d~~~~~~~~~~~~~aDlVilavP~~~~~~~~~~l~~--l~~~~iv~D  173 (374)
T PRK11199         97 DLRPVVIVGGKGQL-GRLFAKMLTLSGYQVRILEQDDWDRAEDILADAGMVIVSVPIHLTEEVIARLPP--LPEDCILVD  173 (374)
T ss_pred             ccceEEEEcCCChh-hHHHHHHHHHCCCeEEEeCCCcchhHHHHHhcCCEEEEeCcHHHHHHHHHHHhC--CCCCcEEEE
Confidence            347899999 6665 9999999999999999998754 346677899999999998422   22   22  688999999


Q ss_pred             eeec
Q 024306          207 VGTC  210 (269)
Q Consensus       207 v~~~  210 (269)
                      ++..
T Consensus       174 v~Sv  177 (374)
T PRK11199        174 LTSV  177 (374)
T ss_pred             CCCc
Confidence            9863

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=97.36  E-value=0.00034  Score=65.19  Aligned_cols=80  Identities=16%  Similarity=0.318  Sum_probs=63.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------CHhhhcCCCCEEEeccCC----CCccc
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVIAAAGV----ANLVR  194 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~~~aDiVIsAtg~----p~~i~  194 (269)
                      .+++||+|.|+|.|.+ |+.+|+.|...|+.+.-..|+..             ++.+.+.++|+||.+.+-    .+++.
T Consensus       158 ~~~~gK~vgilG~G~I-G~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liN  236 (336)
T KOG0069|consen  158 YDLEGKTVGILGLGRI-GKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLIN  236 (336)
T ss_pred             ccccCCEEEEecCcHH-HHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhh
Confidence            5689999999999997 99999999999955666665432             667889999999998873    33565


Q ss_pred             CC---CcCCCcEEEEeeecCC
Q 024306          195 GS---WLKPGAVVLDVGTCPV  212 (269)
Q Consensus       195 ~~---~~~~g~vViDv~~~~~  212 (269)
                      .+   ++++|++++.++.-..
T Consensus       237 k~~~~~mk~g~vlVN~aRG~i  257 (336)
T KOG0069|consen  237 KKFIEKMKDGAVLVNTARGAI  257 (336)
T ss_pred             HHHHHhcCCCeEEEecccccc
Confidence            55   5688999999886543

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.36  E-value=0.00056  Score=63.47  Aligned_cols=75  Identities=9%  Similarity=0.160  Sum_probs=60.0

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhC-C-CEEEEEeCCC--------------------CCHhhhcCCCCEEEeccCCCCc
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRH-H-ATVSIVHALT--------------------KNPEQITSEADIVIAAAGVANL  192 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~-g-a~Vti~~~~t--------------------~~l~~~~~~aDiVIsAtg~p~~  192 (269)
                      .-+++.|||+|.- |+.-+.++..- . -+|++.+|+.                    .+.++.+++||||+++|+...+
T Consensus       127 d~~~l~iiG~G~q-A~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~P  205 (315)
T PRK06823        127 HVSAIGIVGTGIQ-ARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSREP  205 (315)
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCCc
Confidence            5688999999886 88887776543 2 3699987762                    2456788999999999997665


Q ss_pred             -ccCCCcCCCcEEEEeeec
Q 024306          193 -VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       193 -i~~~~~~~g~vViDv~~~  210 (269)
                       ++.+|+++|+.|.=+|.+
T Consensus       206 ~~~~~~l~~G~hi~~iGs~  224 (315)
T PRK06823        206 LLQAEDIQPGTHITAVGAD  224 (315)
T ss_pred             eeCHHHcCCCcEEEecCCC
Confidence             899999999999988854

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.35  E-value=0.00056  Score=63.62  Aligned_cols=75  Identities=17%  Similarity=0.290  Sum_probs=58.9

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhC-C-CEEEEEeCCC--------------------CCHhhhcCCCCEEEeccCCCCc
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRH-H-ATVSIVHALT--------------------KNPEQITSEADIVIAAAGVANL  192 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~-g-a~Vti~~~~t--------------------~~l~~~~~~aDiVIsAtg~p~~  192 (269)
                      .-+++.|||+|.. |+.-+..|... . .+|.+++++.                    .+..+.+++|||||++|+...+
T Consensus       127 ~~~~lgiiG~G~q-A~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~P  205 (325)
T TIGR02371       127 DSSVLGIIGAGRQ-AWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRKP  205 (325)
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCCc
Confidence            4688999999997 99866665432 2 4688987652                    2456788999999999997554


Q ss_pred             -ccCCCcCCCcEEEEeeec
Q 024306          193 -VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       193 -i~~~~~~~g~vViDv~~~  210 (269)
                       +..+|+++|+.|.-+|.+
T Consensus       206 ~~~~~~l~~g~~v~~vGs~  224 (325)
T TIGR02371       206 VVKADWVSEGTHINAIGAD  224 (325)
T ss_pred             EecHHHcCCCCEEEecCCC
Confidence             789999999999999854

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.31  E-value=0.00021  Score=53.89  Aligned_cols=70  Identities=29%  Similarity=0.340  Sum_probs=51.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC---CEEEEE-eCCC---------------C-CHhhhcCCCCEEEeccCCCCc--ccC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHH---ATVSIV-HALT---------------K-NPEQITSEADIVIAAAGVANL--VRG  195 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~g---a~Vti~-~~~t---------------~-~l~~~~~~aDiVIsAtg~p~~--i~~  195 (269)
                      |+.+||.|.+ |.+++..|.+.|   .+|+++ +|+.               . +..+.+++||+||-++.-..+  +-.
T Consensus         1 kI~iIG~G~m-g~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~   79 (96)
T PF03807_consen    1 KIGIIGAGNM-GSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLS   79 (96)
T ss_dssp             EEEEESTSHH-HHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHH
T ss_pred             CEEEECCCHH-HHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHH
Confidence            5889999997 999999999999   789965 6652               1 456778889999999985442  222


Q ss_pred             --CCcCCCcEEEEee
Q 024306          196 --SWLKPGAVVLDVG  208 (269)
Q Consensus       196 --~~~~~g~vViDv~  208 (269)
                        ....++.++||+.
T Consensus        80 ~i~~~~~~~~vis~~   94 (96)
T PF03807_consen   80 EIPHLLKGKLVISIA   94 (96)
T ss_dssp             HHHHHHTTSEEEEES
T ss_pred             HHhhccCCCEEEEeC
Confidence              2466788998875

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.31  E-value=0.00065  Score=62.62  Aligned_cols=75  Identities=13%  Similarity=0.066  Sum_probs=60.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhC-CC-EEEEEeCCC---------------------CCHhhhcCCCCEEEeccCCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRH-HA-TVSIVHALT---------------------KNPEQITSEADIVIAAAGVAN  191 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~-ga-~Vti~~~~t---------------------~~l~~~~~~aDiVIsAtg~p~  191 (269)
                      .-+++.|||+|.- |+.-+..+... .. +|.+.+|+.                     .+.++.+++||||+++|+...
T Consensus       116 da~~l~iiGaG~Q-A~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~  194 (301)
T PRK06407        116 NVENFTIIGSGFQ-AETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT  194 (301)
T ss_pred             CCcEEEEECCcHH-HHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence            5689999999887 98877776643 33 688987762                     246678899999999999766


Q ss_pred             c-ccCCCcCCCcEEEEeeec
Q 024306          192 L-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       192 ~-i~~~~~~~g~vViDv~~~  210 (269)
                      + ++.+|++||+.|.=+|.+
T Consensus       195 P~~~~~~l~pg~hV~aiGs~  214 (301)
T PRK06407        195 PIFNRKYLGDEYHVNLAGSN  214 (301)
T ss_pred             cEecHHHcCCCceEEecCCC
Confidence            5 799999999999988865

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=97.28  E-value=0.00052  Score=62.46  Aligned_cols=92  Identities=13%  Similarity=0.274  Sum_probs=74.5

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC----CC-------EEEEEeCC------------------
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HA-------TVSIVHAL------------------  169 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~----ga-------~Vti~~~~------------------  169 (269)
                      +-.|++..++-.+.++++.+++++|+|.+ |..++.+|...    |.       .+++++++                  
T Consensus         8 ~lAgllnAlk~~g~~l~d~~iv~~GAGsA-g~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a   86 (279)
T cd05312           8 ALAGLLAALRITGKPLSDQRILFLGAGSA-GIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFA   86 (279)
T ss_pred             HHHHHHHHHHHhCCChhhcEEEEECcCHH-HHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHH
Confidence            44678899999999999999999999998 99999988765    76       58888654                  


Q ss_pred             --C-----CCHhhhcC--CCCEEEeccCCCCcccCCCcC------CCcEEEEeeecCC
Q 024306          170 --T-----KNPEQITS--EADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  212 (269)
Q Consensus       170 --t-----~~l~~~~~--~aDiVIsAtg~p~~i~~~~~~------~g~vViDv~~~~~  212 (269)
                        +     .+|.+.++  ++|++|-.++.++.|++++++      +.-+|+=++ ||.
T Consensus        87 ~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  143 (279)
T cd05312          87 RKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALS-NPT  143 (279)
T ss_pred             hhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC-CcC
Confidence              1     25778888  889999988888889999875      356777776 554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.24  E-value=0.0007  Score=62.66  Aligned_cols=75  Identities=21%  Similarity=0.309  Sum_probs=48.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHh-CCC-EEEEEeCCC--------------------CCHhhhcCCCCEEEeccCCCC-
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT--------------------KNPEQITSEADIVIAAAGVAN-  191 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~-~ga-~Vti~~~~t--------------------~~l~~~~~~aDiVIsAtg~p~-  191 (269)
                      .-+++.|||+|.- |+.-+.+|.. +.. +|.+.+|+.                    .+.++.+++|||||++|+... 
T Consensus       127 ~~~~l~viGaG~Q-A~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~  205 (313)
T PF02423_consen  127 DARTLGVIGAGVQ-ARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTP  205 (313)
T ss_dssp             T--EEEEE--SHH-HHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSE
T ss_pred             CCceEEEECCCHH-HHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCC
Confidence            4478999999886 8887777654 444 699998762                    356789999999999999755 


Q ss_pred             --cccCCCcCCCcEEEEeeec
Q 024306          192 --LVRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       192 --~i~~~~~~~g~vViDv~~~  210 (269)
                        +++.+|+++|+.|.-+|..
T Consensus       206 ~P~~~~~~l~~g~hi~~iGs~  226 (313)
T PF02423_consen  206 APVFDAEWLKPGTHINAIGSY  226 (313)
T ss_dssp             EESB-GGGS-TT-EEEE-S-S
T ss_pred             CccccHHHcCCCcEEEEecCC
Confidence              4899999999999999975

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.23  E-value=0.00063  Score=59.29  Aligned_cols=58  Identities=22%  Similarity=0.339  Sum_probs=47.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-CH-----------------hhhcCCCCEEEeccCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-NP-----------------EQITSEADIVIAAAGVA  190 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-~l-----------------~~~~~~aDiVIsAtg~p  190 (269)
                      ++++||+|+|||+|.+ |..-+..|.+.||.|+++..... .+                 .+.+..+|+||.||+.+
T Consensus         5 l~l~gk~vlVvGgG~v-a~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~   80 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDV-ALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDE   80 (205)
T ss_pred             EEcCCCeEEEECcCHH-HHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCH
Confidence            4689999999999886 99999999999999999965421 11                 23467899999999975

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=97.21  E-value=0.0005  Score=61.78  Aligned_cols=92  Identities=14%  Similarity=0.185  Sum_probs=73.9

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-----------EEEEEeCCC-----------------
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-----------TVSIVHALT-----------------  170 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-----------~Vti~~~~t-----------------  170 (269)
                      +-.|++..++-.+.++++.+++++|+|-+ |..++.+|...+.           ++++++++-                 
T Consensus         8 ~lAgllnAlk~~g~~l~d~riv~~GAGsA-g~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~   86 (254)
T cd00762           8 AVAGLLAALKVTKKKISEHKVLFNGAGAA-ALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLA   86 (254)
T ss_pred             HHHHHHHHHHHhCCChhhcEEEEECcCHH-HHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHH
Confidence            44678889999999999999999999998 9999999876543           588886540                 


Q ss_pred             ---------CCHhhhcC--CCCEEEeccCCCCcccCCCcCC------CcEEEEeeecCC
Q 024306          171 ---------KNPEQITS--EADIVIAAAGVANLVRGSWLKP------GAVVLDVGTCPV  212 (269)
Q Consensus       171 ---------~~l~~~~~--~aDiVIsAtg~p~~i~~~~~~~------g~vViDv~~~~~  212 (269)
                               .+|.+.++  ++|++|-.++.|+.|++|+++.      .-+|+=++ ||.
T Consensus        87 ~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  144 (254)
T cd00762          87 RFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALS-NPT  144 (254)
T ss_pred             HHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECC-CcC
Confidence                     25777888  8999999999889999998753      55777766 554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK06046 alanine dehydrogenase; Validated

Probab=97.21  E-value=0.0009  Score=62.24  Aligned_cols=74  Identities=20%  Similarity=0.327  Sum_probs=57.9

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHh-CCC-EEEEEeCCC---------------------CCHhhhcCCCCEEEeccCCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT---------------------KNPEQITSEADIVIAAAGVAN  191 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~-~ga-~Vti~~~~t---------------------~~l~~~~~~aDiVIsAtg~p~  191 (269)
                      .-+++.|||+|+. |+..+..|.. .+. .|.+++++.                     .++.+.+. +|+|+++|+...
T Consensus       128 ~~~~vgiiG~G~q-a~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~  205 (326)
T PRK06046        128 DSKVVGIIGAGNQ-ARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK  205 (326)
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC
Confidence            4678999999997 9998888764 455 488887652                     13445565 999999999655


Q ss_pred             c-ccCCCcCCCcEEEEeeec
Q 024306          192 L-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       192 ~-i~~~~~~~g~vViDv~~~  210 (269)
                      + ++.+|+++|+.|.-+|.+
T Consensus       206 P~~~~~~l~~g~hV~~iGs~  225 (326)
T PRK06046        206 PVVKAEWIKEGTHINAIGAD  225 (326)
T ss_pred             cEecHHHcCCCCEEEecCCC
Confidence            4 899999999999999854

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=97.21  E-value=0.00043  Score=62.22  Aligned_cols=92  Identities=14%  Similarity=0.232  Sum_probs=70.8

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC----CC-------EEEEEeCC------------------
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HA-------TVSIVHAL------------------  169 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~----ga-------~Vti~~~~------------------  169 (269)
                      +-.|++..++-.+.++++.+++++|+|-+ |-.++.+|...    |.       ++++++++                  
T Consensus         8 ~lAgll~Al~~~g~~l~d~riv~~GAGsA-g~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a   86 (255)
T PF03949_consen    8 VLAGLLNALRVTGKKLSDQRIVFFGAGSA-GIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFA   86 (255)
T ss_dssp             HHHHHHHHHHHHTS-GGG-EEEEEB-SHH-HHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHcEEEEeCCChh-HHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhh
Confidence            34678899999999999999999999998 99999988766    86       39999765                  


Q ss_pred             --------CCCHhhhcCCC--CEEEeccCCCCcccCCCcCC------CcEEEEeeecCC
Q 024306          170 --------TKNPEQITSEA--DIVIAAAGVANLVRGSWLKP------GAVVLDVGTCPV  212 (269)
Q Consensus       170 --------t~~l~~~~~~a--DiVIsAtg~p~~i~~~~~~~------g~vViDv~~~~~  212 (269)
                              ..+|.+.++++  |++|-.++.++.|++|+++.      .-+|+=+. ||.
T Consensus        87 ~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LS-NPt  144 (255)
T PF03949_consen   87 RKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLS-NPT  144 (255)
T ss_dssp             BSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-S-SSC
T ss_pred             ccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECC-CCC
Confidence                    02688899999  99999999999999998754      45777766 554

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=97.15  E-value=0.017  Score=53.47  Aligned_cols=141  Identities=16%  Similarity=0.160  Sum_probs=95.3

Q ss_pred             HHHHHHHHcCCeEEEEEcCC-CCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceeccc
Q 024306           28 NKIKACEEVGIKSIVTEFAD-GCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNL  106 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~-~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~l  106 (269)
                      +-..++.++|.++.++.-.. +...+.+.+..+-|+.  .+|+|.+-.|--.  ....+.+.       ..+-.+|.|  
T Consensus        60 SFe~A~~~LGg~~i~l~~~~~~~~~~~~~dt~~vls~--~~D~iv~R~~~~~--~~~~~a~~-------~~vPVINag--  126 (311)
T PRK14804         60 SFEVAMTEMGGHGIYLDWMASNFQLSDIDLEARYLSR--NVSVIMARLKKHE--DLLVMKNG-------SQVPVINGC--  126 (311)
T ss_pred             HHHHHHHHcCCeEEEeCCCccccccccHHHHHHHHHh--cCCEEEEeCCChH--HHHHHHHH-------CCCCEEECC--
Confidence            45678999999998886532 1222344445666665  5899999877332  22222221       123345642  


Q ss_pred             ccCCCCCccccCCHHH-HHHHHHHhCC-CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------
Q 024306          107 AMRGREPLFIPCTPKG-CIELLIRSGV-EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------  170 (269)
Q Consensus       107 ~~g~~~~~~~p~t~~g-~~~~l~~~~~-~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------  170 (269)
                           ...+.||=+.+ +..+.++.+. +++|++|+++|.++-|.+.++.++...|++|++++...              
T Consensus       127 -----~~~~HPtQaL~Dl~Ti~e~~g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~  201 (311)
T PRK14804        127 -----DNMFHPCQSLADIMTIALDSPEIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAK  201 (311)
T ss_pred             -----CCCCChHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHH
Confidence                 12366887777 4555555554 69999999999988889999999999999999997532              


Q ss_pred             --------CCHhhhcCCCCEEEec
Q 024306          171 --------KNPEQITSEADIVIAA  186 (269)
Q Consensus       171 --------~~l~~~~~~aDiVIsA  186 (269)
                              .++.+.+++||+|.+-
T Consensus       202 ~~g~i~~~~d~~~av~~aDvvy~d  225 (311)
T PRK14804        202 KKGTLSWEMNLHKAVSHADYVYTD  225 (311)
T ss_pred             hcCCeEEEeCHHHHhCCCCEEEee
Confidence                    3556788999999973

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=97.14  E-value=0.013  Score=54.27  Aligned_cols=141  Identities=9%  Similarity=0.035  Sum_probs=94.5

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC----CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCcccccccccccee
Q 024306           28 NKIKACEEVGIKSIVTEFADGC----TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNI  103 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~----~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~  103 (269)
                      +-..++.++|..+.+.  +...    ..|.+.+.++-|+. -.+++|.+-.|-..  ....+.+.+      ..+-.+|.
T Consensus        62 SFe~A~~~LGg~~~~~--~~~~s~~~kgEsl~Dtarvls~-y~~D~iv~R~~~~~--~~~~~a~~~------~~vPvINa  130 (310)
T PRK13814         62 SFEIAAKRLGAMVLNP--NLKISAISKGETLFDTIKTLEA-MGVYFFIVRHSENE--TPEQIAKQL------SSGVVINA  130 (310)
T ss_pred             HHHHHHHHhCCeEEEC--CCccccCCCCCCHHHHHHHHHH-hCCCEEEEeCCchh--HHHHHHHhC------CCCCeEEC
Confidence            3556888999977764  3221    13567777777776 34678888766332  223332322      11334564


Q ss_pred             cccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCC--cccHHHHHHHHHhCCC-EEEEEeCC-----------
Q 024306          104 GNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRHHA-TVSIVHAL-----------  169 (269)
Q Consensus       104 g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~g--g~vg~~~a~~L~~~ga-~Vti~~~~-----------  169 (269)
                      |      .++.+.||=+.+=+--++++-.+++|.+|+++|-+  +.|.+.++..++..|. +|++++..           
T Consensus       131 g------~g~~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~  204 (310)
T PRK13814        131 G------DGNHQHPSQALIDLMTIKQHKPHWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDS  204 (310)
T ss_pred             C------cCCCCCchHHHHHHHHHHHHhCCcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccce
Confidence            2      24456799888844444444446999999999986  4569999999999998 89998643           


Q ss_pred             ---CCCHhhhcCCCCEEEe
Q 024306          170 ---TKNPEQITSEADIVIA  185 (269)
Q Consensus       170 ---t~~l~~~~~~aDiVIs  185 (269)
                         +.++.+++++||+|.+
T Consensus       205 ~~~~~d~~ea~~~aDvvy~  223 (310)
T PRK13814        205 IKKFTELKPSLLNSDVIVT  223 (310)
T ss_pred             EEEEcCHHHHhCCCCEEEE
Confidence               2466789999999986

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.13  E-value=0.0014  Score=61.65  Aligned_cols=75  Identities=13%  Similarity=0.208  Sum_probs=57.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHh-CCC-EEEEEeCCC--------------------CCHhhhcCCCCEEEeccCCCC-
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT--------------------KNPEQITSEADIVIAAAGVAN-  191 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~-~ga-~Vti~~~~t--------------------~~l~~~~~~aDiVIsAtg~p~-  191 (269)
                      .-+++.|||+|.- |+.-++.+.. +.. +|++.+|+.                    .+.++.+++||||+++|+... 
T Consensus       128 da~~l~iiGaG~Q-A~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~  206 (346)
T PRK07589        128 DSRTMALIGNGAQ-SEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTN  206 (346)
T ss_pred             CCcEEEEECCcHH-HHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCC
Confidence            4578999999886 8777665543 333 699987762                    346788999999999998543 


Q ss_pred             --cccCCCcCCCcEEEEeeec
Q 024306          192 --LVRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       192 --~i~~~~~~~g~vViDv~~~  210 (269)
                        +++.+|+++|+.|.=+|.+
T Consensus       207 ~Pvl~~~~lkpG~hV~aIGs~  227 (346)
T PRK07589        207 ATILTDDMVEPGMHINAVGGD  227 (346)
T ss_pred             CceecHHHcCCCcEEEecCCC
Confidence              4899999999999888854

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=97.11  E-value=0.0012  Score=60.29  Aligned_cols=73  Identities=26%  Similarity=0.347  Sum_probs=56.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------CH-hhhcCCCCEEEeccCCCC---cc
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------NP-EQITSEADIVIAAAGVAN---LV  193 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------~l-~~~~~~aDiVIsAtg~p~---~i  193 (269)
                      -++|+|+|.|.+ |+.++..|..+|..|.++.+...                  +. .+....||+||-|+|...   ++
T Consensus         3 ~~~v~IvG~Gli-G~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLM-GGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVL   81 (279)
T ss_pred             CcEEEEECCchH-HHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHHH
Confidence            367999999886 99999999999998888865421                  22 566778999999999533   22


Q ss_pred             ---cCCCcCCCcEEEEeeec
Q 024306          194 ---RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       194 ---~~~~~~~g~vViDv~~~  210 (269)
                         .+ .+++|++|.|++..
T Consensus        82 ~~l~~-~l~~g~iv~Dv~S~  100 (279)
T COG0287          82 KELAP-HLKKGAIVTDVGSV  100 (279)
T ss_pred             HHhcc-cCCCCCEEEecccc
Confidence               22 68899999999964

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=97.09  E-value=0.00095  Score=56.05  Aligned_cols=54  Identities=22%  Similarity=0.254  Sum_probs=43.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------CHhhhcCCCCEEEeccC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------NPEQITSEADIVIAAAG  188 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------~l~~~~~~aDiVIsAtg  188 (269)
                      |++|+|.|||.|.- |++-|..|.+.|.+|++..|..+              +..+.++.||+|+..++
T Consensus         2 l~~k~IAViGyGsQ-G~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~P   69 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQ-GHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLP   69 (165)
T ss_dssp             HCTSEEEEES-SHH-HHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-
T ss_pred             cCCCEEEEECCChH-HHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCC
Confidence            58999999999987 99999999999999999987642              46789999999999998

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.09  E-value=0.00083  Score=58.63  Aligned_cols=73  Identities=27%  Similarity=0.347  Sum_probs=56.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------CHhhhcCCCCEEEeccCCCCc--cc---
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------NPEQITSEADIVIAAAGVANL--VR---  194 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------~l~~~~~~aDiVIsAtg~p~~--i~---  194 (269)
                      +++.|+|+|.. |.+++..|.+.|.+|++.+|+.+                 +..++.+.||+||-|++.+..  +-   
T Consensus         2 ~~~~i~GtGni-G~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l   80 (211)
T COG2085           2 MIIAIIGTGNI-GSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAEL   80 (211)
T ss_pred             cEEEEeccChH-HHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHH
Confidence            46899999997 99999999999999999977642                 345788999999999996442  11   


Q ss_pred             CCCcCCCcEEEEeeecCC
Q 024306          195 GSWLKPGAVVLDVGTCPV  212 (269)
Q Consensus       195 ~~~~~~g~vViDv~~~~~  212 (269)
                      .+++. |.+|||+. ||.
T Consensus        81 ~~~~~-~KIvID~t-np~   96 (211)
T COG2085          81 RDALG-GKIVIDAT-NPI   96 (211)
T ss_pred             HHHhC-CeEEEecC-CCc
Confidence            22233 89999987 554

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.09  E-value=0.0012  Score=60.12  Aligned_cols=72  Identities=19%  Similarity=0.309  Sum_probs=55.6

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCC----c-ccC---
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----L-VRG---  195 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~----~-i~~---  195 (269)
                      +|.|||.|.+ |.+++..|.+.|.+|++++++.              .+..+.++++|+||.+++...    . +..   
T Consensus         1 ~IgvIG~G~m-G~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~   79 (291)
T TIGR01505         1 KVGFIGLGIM-GSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGI   79 (291)
T ss_pred             CEEEEEecHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchH
Confidence            4889999887 9999999999999999998762              245677899999999998532    1 221   


Q ss_pred             -CCcCCCcEEEEeeec
Q 024306          196 -SWLKPGAVVLDVGTC  210 (269)
Q Consensus       196 -~~~~~g~vViDv~~~  210 (269)
                       ..++++++++|++..
T Consensus        80 ~~~~~~g~iivd~st~   95 (291)
T TIGR01505        80 IEGAKPGKTLVDMSSI   95 (291)
T ss_pred             hhcCCCCCEEEECCCC
Confidence             235788999997643

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PLN02712 arogenate dehydrogenase

Probab=97.08  E-value=0.0012  Score=67.21  Aligned_cols=80  Identities=11%  Similarity=0.171  Sum_probs=60.0

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------CHhhhcC-CCCEEEeccCCCC---c
Q 024306          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITS-EADIVIAAAGVAN---L  192 (269)
Q Consensus       130 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~~-~aDiVIsAtg~p~---~  192 (269)
                      .+.++++++|.|||.|.+ |..++..|.+.|.+|+++++...             ++.+.+. ++|+||.+++...   .
T Consensus       363 ~~~~~~~~kIgIIGlG~m-G~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~v  441 (667)
T PLN02712        363 CVNDGSKLKIAIVGFGNF-GQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKV  441 (667)
T ss_pred             ccCCCCCCEEEEEecCHH-HHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHH
Confidence            345678999999999886 99999999999999999887632             2333344 5899999998422   2


Q ss_pred             cc---CCCcCCCcEEEEeeec
Q 024306          193 VR---GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       193 i~---~~~~~~g~vViDv~~~  210 (269)
                      +.   ...++++++|+|++..
T Consensus       442 i~~l~~~~lk~g~ivvDv~Sv  462 (667)
T PLN02712        442 LKSLPFQRLKRSTLFVDVLSV  462 (667)
T ss_pred             HHHHHHhcCCCCcEEEECCCc
Confidence            22   2246889999999754

>PRK13529 malate dehydrogenase; Provisional

Probab=97.06  E-value=0.003  Score=62.53  Aligned_cols=93  Identities=13%  Similarity=0.203  Sum_probs=74.8

Q ss_pred             CCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh----CCC-------EEEEEeCC-----------------
Q 024306          118 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----HHA-------TVSIVHAL-----------------  169 (269)
Q Consensus       118 ~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~----~ga-------~Vti~~~~-----------------  169 (269)
                      .+-.|++..++-.+.++++.+++++|+|.+ |..+|.+|..    +|.       .+++++++                 
T Consensus       277 V~LAgll~A~r~~g~~l~d~riv~~GAGsA-giGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~f  355 (563)
T PRK13529        277 VTLAGLLAALKITGEPLSDQRIVFLGAGSA-GCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPY  355 (563)
T ss_pred             HHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHH
Confidence            355788999999999999999999999998 9999999876    576       58888654                 


Q ss_pred             ---C------------CCHhhhcCCC--CEEEeccCCCCcccCCCcCC------CcEEEEeeecCC
Q 024306          170 ---T------------KNPEQITSEA--DIVIAAAGVANLVRGSWLKP------GAVVLDVGTCPV  212 (269)
Q Consensus       170 ---t------------~~l~~~~~~a--DiVIsAtg~p~~i~~~~~~~------g~vViDv~~~~~  212 (269)
                         +            .+|.+.++.+  |++|-..+.|+.|++++++.      .-+|+=++ ||.
T Consensus       356 a~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NPt  420 (563)
T PRK13529        356 ARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLS-NPT  420 (563)
T ss_pred             hhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CcC
Confidence               0            2567888888  99999888888899888753      45777666 553

>PLN02256 arogenate dehydrogenase

Probab=97.06  E-value=0.0017  Score=59.91  Aligned_cols=82  Identities=17%  Similarity=0.204  Sum_probs=59.8

Q ss_pred             HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------CHhhhc-CCCCEEEeccCCC--
Q 024306          127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQIT-SEADIVIAAAGVA--  190 (269)
Q Consensus       127 l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~-~~aDiVIsAtg~p--  190 (269)
                      |++.--+-++++|.|||.|.+ |..++..|.+.|.+|+++++...             +..+.+ .++|+||-+++..  
T Consensus        27 ~~~~~~~~~~~kI~IIG~G~m-G~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~  105 (304)
T PLN02256         27 LQEELEKSRKLKIGIVGFGNF-GQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSILST  105 (304)
T ss_pred             HhHhhccCCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHH
Confidence            444444557889999999886 99999999999988988876531             233344 4699999999842  


Q ss_pred             -Cccc---CCCcCCCcEEEEeee
Q 024306          191 -NLVR---GSWLKPGAVVLDVGT  209 (269)
Q Consensus       191 -~~i~---~~~~~~g~vViDv~~  209 (269)
                       ..+.   ...++++++|+|++.
T Consensus       106 ~~vl~~l~~~~l~~~~iviDv~S  128 (304)
T PLN02256        106 EAVLRSLPLQRLKRSTLFVDVLS  128 (304)
T ss_pred             HHHHHhhhhhccCCCCEEEecCC
Confidence             2222   234678999999997

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.05  E-value=0.0024  Score=62.07  Aligned_cols=43  Identities=23%  Similarity=0.183  Sum_probs=38.2

Q ss_pred             HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       127 l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      |...+.++++++|+|+|.|++ |..+|..|.++|++|+++++..
T Consensus         7 ~~~~~~~~~~~~v~viG~G~~-G~~~A~~L~~~G~~V~~~d~~~   49 (480)
T PRK01438          7 LTSWHSDWQGLRVVVAGLGVS-GFAAADALLELGARVTVVDDGD   49 (480)
T ss_pred             hhhcccCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCc
Confidence            566778889999999999997 9999999999999999998653

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.03  E-value=0.0017  Score=59.08  Aligned_cols=74  Identities=19%  Similarity=0.287  Sum_probs=57.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCC----cc-cC--
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LV-RG--  195 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~----~i-~~--  195 (269)
                      ++|.|||.|.+ |.+++..|.+.|.+|++++++.              .+..+.++++|+||.+++.+.    .+ ..  
T Consensus         3 ~~IgviG~G~m-G~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~   81 (296)
T PRK11559          3 MKVGFIGLGIM-GKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENG   81 (296)
T ss_pred             ceEEEEccCHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcch
Confidence            47999999887 9999999999999999998752              345667889999999998422    22 11  


Q ss_pred             --CCcCCCcEEEEeeecC
Q 024306          196 --SWLKPGAVVLDVGTCP  211 (269)
Q Consensus       196 --~~~~~g~vViDv~~~~  211 (269)
                        ..++++.+++|++...
T Consensus        82 ~~~~~~~g~iiid~st~~   99 (296)
T PRK11559         82 IIEGAKPGTVVIDMSSIA   99 (296)
T ss_pred             HhhcCCCCcEEEECCCCC
Confidence              2457899999987553

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=97.02  E-value=0.013  Score=54.82  Aligned_cols=141  Identities=11%  Similarity=0.051  Sum_probs=95.7

Q ss_pred             HHHHHHHHcCCeEEEEEcCCC--CCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceecc
Q 024306           28 NKIKACEEVGIKSIVTEFADG--CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGN  105 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~--~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~  105 (269)
                      +-..++.++|.++.++.-...  ...|.+.+.++-|+.-  +|+|.+--|-..  ...++.+..    .   +-.+|.+ 
T Consensus        63 SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y--~D~iv~R~~~~~--~~~~~a~~~----~---vPVINa~-  130 (334)
T PRK01713         63 AFEVAAYDQGAQVTYIDPNSSQIGHKESMKDTARVLGRM--YDAIEYRGFKQS--IVNELAEYA----G---VPVFNGL-  130 (334)
T ss_pred             HHHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHh--CCEEEEEcCchH--HHHHHHHhC----C---CCEEECC-
Confidence            456688999999887632110  1236688888888873  889999876322  122222221    1   3344541 


Q ss_pred             cccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCCC-------------
Q 024306          106 LAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHALT-------------  170 (269)
Q Consensus       106 l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~t-------------  170 (269)
                            .+...||=+.+ ++.+.++.+.+++|++|+++|-+ ..|.+.++.+++..|++|+++....             
T Consensus       131 ------~~~~HPtQaL~Dl~Ti~e~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~  204 (334)
T PRK01713        131 ------TDEFHPTQMLADVLTMIENCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEK  204 (334)
T ss_pred             ------CCCCChHHHHHHHHHHHHHcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHH
Confidence                  23456887777 45555656657999999999986 4479999999999999999986431             


Q ss_pred             ------------CCHhhhcCCCCEEEec
Q 024306          171 ------------KNPEQITSEADIVIAA  186 (269)
Q Consensus       171 ------------~~l~~~~~~aDiVIsA  186 (269)
                                  .++.+.+++||+|.+-
T Consensus       205 ~~~~~g~~~~~~~d~~~a~~~aDvVyt~  232 (334)
T PRK01713        205 FAKESGARITVTDDIDKAVKGVDFVHTD  232 (334)
T ss_pred             HHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence                        3566789999999974

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=97.01  E-value=0.018  Score=53.91  Aligned_cols=141  Identities=9%  Similarity=-0.064  Sum_probs=95.2

Q ss_pred             HHHHHHHHcCCeEEEEEcCCC--CCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceecc
Q 024306           28 NKIKACEEVGIKSIVTEFADG--CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGN  105 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~--~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~  105 (269)
                      +-..+++++|.++.+..-...  ...|.+.+.++-|+.-  +|+|.+-.|-..  ....+.+..       .+-.+|.+ 
T Consensus        62 SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~y--~D~iviR~~~~~--~~~~~a~~s-------~vPVINa~-  129 (332)
T PRK04284         62 AFEVAAYDQGAHVTYLGPTGSQMGKKESTKDTARVLGGM--YDGIEYRGFSQR--TVETLAEYS-------GVPVWNGL-  129 (332)
T ss_pred             HHHHHHHHcCCeEEEcCCccccCCCCcCHHHHHHHHHHh--CCEEEEecCchH--HHHHHHHhC-------CCCEEECC-
Confidence            456788999999886532211  0146788888888873  889999876332  222232221       13345632 


Q ss_pred             cccCCCCCccccCCHHHHHHHHHHh-CCCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC--------------
Q 024306          106 LAMRGREPLFIPCTPKGCIELLIRS-GVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL--------------  169 (269)
Q Consensus       106 l~~g~~~~~~~p~t~~g~~~~l~~~-~~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~--------------  169 (269)
                            .+...||=+.+=+--+.++ ...++|++|+++|-+ ..|.+.++.++...|++|++++..              
T Consensus       130 ------~~~~HPtQaL~Dl~Ti~e~~~g~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~  203 (332)
T PRK04284        130 ------TDEDHPTQVLADFLTAKEHLKKPYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKE  203 (332)
T ss_pred             ------CCCCChHHHHHHHHHHHHHhcCCcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHH
Confidence                  2345688877744444444 347999999999985 346999999999999999999643              


Q ss_pred             -----------CCCHhhhcCCCCEEEec
Q 024306          170 -----------TKNPEQITSEADIVIAA  186 (269)
Q Consensus       170 -----------t~~l~~~~~~aDiVIsA  186 (269)
                                 +.++.+++++||+|.+-
T Consensus       204 ~~~~~g~~~~~~~d~~ea~~~aDvvy~~  231 (332)
T PRK04284        204 IAAETGGKITITDDIDEGVKGSDVIYTD  231 (332)
T ss_pred             HHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence                       13556789999999975

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=97.00  E-value=0.017  Score=54.08  Aligned_cols=141  Identities=11%  Similarity=0.004  Sum_probs=96.0

Q ss_pred             HHHHHHHHcCCeEEEEEcCCC--CCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceecc
Q 024306           28 NKIKACEEVGIKSIVTEFADG--CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGN  105 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~--~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~  105 (269)
                      +-..++.++|..+.+..-...  ...|.+.+.++-|+.-  +|+|.+-.|-..  ...++.+..       .+-.+|.+ 
T Consensus        62 SFe~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y--~D~Iv~R~~~~~--~~~~~a~~~-------~vPVINa~-  129 (336)
T PRK03515         62 SFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRM--YDGIQYRGYGQE--IVETLAEYA-------GVPVWNGL-  129 (336)
T ss_pred             HHHHHHHHcCCcEEEeCCccccCCCCCCHHHHHHHHHHh--CcEEEEEeCChH--HHHHHHHhC-------CCCEEECC-
Confidence            456788999999988642110  1236788888888873  889999877332  222332221       12234531 


Q ss_pred             cccCCCCCccccCCHHH-HHHHHHHhC-CCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC-------------
Q 024306          106 LAMRGREPLFIPCTPKG-CIELLIRSG-VEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL-------------  169 (269)
Q Consensus       106 l~~g~~~~~~~p~t~~g-~~~~l~~~~-~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~-------------  169 (269)
                            .+...||=+.+ +..+.++.+ .+++|.+++.+|-+ ..|.+.++.+++..|+++++++..             
T Consensus       130 ------~~~~HPtQaLaDl~Ti~e~~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~  203 (336)
T PRK03515        130 ------TNEFHPTQLLADLLTMQEHLPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECR  203 (336)
T ss_pred             ------CCCCChHHHHHHHHHHHHHhCCCCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHH
Confidence                  23466988877 455555554 37999999999975 346999999999999999998643             


Q ss_pred             ------------CCCHhhhcCCCCEEEec
Q 024306          170 ------------TKNPEQITSEADIVIAA  186 (269)
Q Consensus       170 ------------t~~l~~~~~~aDiVIsA  186 (269)
                                  +.++.+.+++||+|.+.
T Consensus       204 ~~~~~~g~~i~~~~d~~ea~~~aDvvytd  232 (336)
T PRK03515        204 ALAQKNGGNITLTEDIAEGVKGADFIYTD  232 (336)
T ss_pred             HHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence                        13566789999999975

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.97  E-value=0.001  Score=58.26  Aligned_cols=116  Identities=22%  Similarity=0.296  Sum_probs=70.8

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-C-----------------CHhhhcCCCCEEEeccCCCCc-
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-K-----------------NPEQITSEADIVIAAAGVANL-  192 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~-----------------~l~~~~~~aDiVIsAtg~p~~-  192 (269)
                      .+++||+|+|+|.|.. |.-=+..|.+.||+|++..... +                 -..+.+..+++||.||+-+.+ 
T Consensus         8 ~~l~~k~VlvvGgG~v-a~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~ln   86 (210)
T COG1648           8 LDLEGKKVLVVGGGSV-ALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEELN   86 (210)
T ss_pred             EEcCCCEEEEECCCHH-HHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHHH
Confidence            4689999999999886 9888999999999999985442 1                 112445669999999986542 


Q ss_pred             --ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHh---hHcceecccCCcccHHHHHHHHHHHHHHH
Q 024306          193 --VRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAM---RLASVITPVPGGVGPMTVAMLLSNTLDSA  262 (269)
Q Consensus       193 --i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~---~~~~~~tpvpgGvGp~T~~mLl~n~v~a~  262 (269)
                        +.... ++-.+.+.+.-.|..           +|+-+.+.-   +..-+++  -||-+|+.+.||.++....+
T Consensus        87 ~~i~~~a-~~~~i~vNv~D~p~~-----------~~f~~Pa~~~r~~l~iaIs--T~G~sP~la~~ir~~Ie~~l  147 (210)
T COG1648          87 ERIAKAA-RERRILVNVVDDPEL-----------CDFIFPAIVDRGPLQIAIS--TGGKSPVLARLLREKIEALL  147 (210)
T ss_pred             HHHHHHH-HHhCCceeccCCccc-----------CceecceeeccCCeEEEEE--CCCCChHHHHHHHHHHHHHc
Confidence              11111 111233333333321           122222211   1233444  58888888888887765544

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.96  E-value=0.0016  Score=59.66  Aligned_cols=74  Identities=20%  Similarity=0.291  Sum_probs=57.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCC----ccc-CC-
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVR-GS-  196 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~----~i~-~~-  196 (269)
                      ++|.|||.|.+ |.+++..|++.|.+|++++++.              .+..+.++++|+||.+++.+.    .+. .+ 
T Consensus         2 ~~Ig~IGlG~m-G~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~   80 (296)
T PRK15461          2 AAIAFIGLGQM-GSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENG   80 (296)
T ss_pred             CeEEEEeeCHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCccc
Confidence            37999999987 9999999999999999998762              245567889999999998542    121 11 


Q ss_pred             ---CcCCCcEEEEeeecC
Q 024306          197 ---WLKPGAVVLDVGTCP  211 (269)
Q Consensus       197 ---~~~~g~vViDv~~~~  211 (269)
                         .++++.++||++...
T Consensus        81 i~~~l~~g~lvid~sT~~   98 (296)
T PRK15461         81 VCEGLSRDALVIDMSTIH   98 (296)
T ss_pred             HhhcCCCCCEEEECCCCC
Confidence               256789999988654

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=96.95  E-value=0.024  Score=52.34  Aligned_cols=141  Identities=13%  Similarity=0.142  Sum_probs=96.5

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceec
Q 024306           28 NKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG  104 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~---~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g  104 (269)
                      +-..++.++|.++.++.-+.+.   ..|.+.+..+-|+.-  +|+|.+-.|-.  -...++.+..       .+-.+|.|
T Consensus        56 SFe~A~~~LGg~~i~l~~~~~s~~~kgEsi~Dta~vls~y--~D~iviR~~~~--~~~~~~a~~s-------~vPVINa~  124 (301)
T TIGR00670        56 SFETAMKRLGGDVVNFSDSETSSVAKGETLADTIKTLSGY--SDAIVIRHPLE--GAARLAAEVS-------EVPVINAG  124 (301)
T ss_pred             HHHHHHHHcCCcEEEcCCCCcccCCCCcCHHHHHHHHHHh--CCEEEEECCch--hHHHHHHhhC-------CCCEEeCC
Confidence            4567899999988877541211   235677777777773  88999987633  2223333322       23345642


Q ss_pred             ccccCCCCCccccCCHHHH-HHHHHHhCCCCccceEEEEcCC--cccHHHHHHHHHhCCCEEEEEeCCC-----------
Q 024306          105 NLAMRGREPLFIPCTPKGC-IELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVHALT-----------  170 (269)
Q Consensus       105 ~l~~g~~~~~~~p~t~~g~-~~~l~~~~~~l~gk~v~ViG~g--g~vg~~~a~~L~~~ga~Vti~~~~t-----------  170 (269)
                      .      ...+.||=+.+= ..+.++.+ +++|++|+++|-+  +.|.+.++.+++..|++|++++...           
T Consensus       125 ~------g~~~HPtQ~LaDl~Ti~e~~g-~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~  197 (301)
T TIGR00670       125 D------GSNQHPTQTLLDLYTIYEEFG-RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEEL  197 (301)
T ss_pred             C------CCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHH
Confidence            1      123568888884 44444554 7999999999997  5679999999999999999996442           


Q ss_pred             ----------CCHhhhcCCCCEEEec
Q 024306          171 ----------KNPEQITSEADIVIAA  186 (269)
Q Consensus       171 ----------~~l~~~~~~aDiVIsA  186 (269)
                                .++.+++++||+|.+-
T Consensus       198 ~~~G~~v~~~~d~~~a~~~aDvvyt~  223 (301)
T TIGR00670       198 KAKGIKVRETESLEEVIDEADVLYVT  223 (301)
T ss_pred             HHcCCEEEEECCHHHHhCCCCEEEEC
Confidence                      3556788999999874

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=96.95  E-value=0.0057  Score=58.57  Aligned_cols=95  Identities=23%  Similarity=0.294  Sum_probs=65.0

Q ss_pred             cCCHHHHHHHHHHhC--CCCccceEEEEcC----------------CcccHHHHHHHHHhCCCEEEEEeCCCC-------
Q 024306          117 PCTPKGCIELLIRSG--VEIMGKNAVVIGR----------------SNIVGLPTSLLLQRHHATVSIVHALTK-------  171 (269)
Q Consensus       117 p~t~~g~~~~l~~~~--~~l~gk~v~ViG~----------------gg~vg~~~a~~L~~~ga~Vti~~~~t~-------  171 (269)
                      .++++-++..+++.-  .+++||+++|.|+                +|-+|+++|..|..+||+|+++++...       
T Consensus       167 ~~~~~~I~~~~~~~~~~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~~~~~~  246 (399)
T PRK05579        167 MAEPEEIVAAAERALSPKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLPTPAGV  246 (399)
T ss_pred             CCCHHHHHHHHHHHhhhcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccccCCCCc
Confidence            346666666665432  5689999999998                675699999999999999998875421       


Q ss_pred             ---------CH----hhhcCCCCEEEeccCCCCcc----cCCCcCCC--cEEEEeeecC
Q 024306          172 ---------NP----EQITSEADIVIAAAGVANLV----RGSWLKPG--AVVLDVGTCP  211 (269)
Q Consensus       172 ---------~l----~~~~~~aDiVIsAtg~p~~i----~~~~~~~g--~vViDv~~~~  211 (269)
                               ++    .+.....|++|++.+...+-    ...-++++  ...+.+.-+|
T Consensus       247 ~~~dv~~~~~~~~~v~~~~~~~DilI~~Aav~d~~~~~~~~~Kikk~~~~~~l~L~~~p  305 (399)
T PRK05579        247 KRIDVESAQEMLDAVLAALPQADIFIMAAAVADYRPATVAEGKIKKGEGELTLELVPNP  305 (399)
T ss_pred             EEEccCCHHHHHHHHHHhcCCCCEEEEcccccccccccccccCccCCCCCceEEEEeCc
Confidence                     11    23346789999988854431    22234443  3567777766

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.92  E-value=0.023  Score=52.57  Aligned_cols=144  Identities=13%  Similarity=0.205  Sum_probs=96.4

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCC--CCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceec
Q 024306           27 RNKIKACEEVGIKSIVTEFADG--CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG  104 (269)
Q Consensus        27 ~~~~~~~~~~Gi~~~~~~~~~~--~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g  104 (269)
                      -+-..++.++|.++.++.-...  ...|.+.+.++-|+. -++|+|.+-.|-..  ...++.+.       -.+-.+|.|
T Consensus        61 ~SFe~A~~~LGg~~i~l~~~~~~~~kgEs~~Dta~vls~-y~~D~iv~R~~~~~--~~~~~a~~-------~~vPVINa~  130 (305)
T PRK00856         61 LSFELAAKRLGADVINFSASTSSVSKGETLADTIRTLSA-MGADAIVIRHPQSG--AARLLAES-------SDVPVINAG  130 (305)
T ss_pred             HHHHHHHHHcCCcEEEeCCCcccCCCCcCHHHHHHHHHh-cCCCEEEEeCCChH--HHHHHHHH-------CCCCEEECC
Confidence            3456788999998877643210  113456677777766 35788988876332  22222222       123345642


Q ss_pred             ccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC--cccHHHHHHHHHhCCCEEEEEeCC------------
Q 024306          105 NLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVHAL------------  169 (269)
Q Consensus       105 ~l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~g--g~vg~~~a~~L~~~ga~Vti~~~~------------  169 (269)
                      .      .+...||=+.+ +..+.++.| +++|++|+++|-+  +.|.+.++.+++..|+++++++..            
T Consensus       131 ~------g~~~HPtQ~LaDl~Ti~e~~G-~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~  203 (305)
T PRK00856        131 D------GSHQHPTQALLDLLTIREEFG-RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGV  203 (305)
T ss_pred             C------CCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEE
Confidence            1      13456888887 555555554 6999999999986  456999999999999999999643            


Q ss_pred             CCCHhhhcCCCCEEEecc
Q 024306          170 TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       170 t~~l~~~~~~aDiVIsAt  187 (269)
                      +.++.+++++||+|.+..
T Consensus       204 ~~d~~ea~~~aDvvyt~~  221 (305)
T PRK00856        204 HTDLDEVIEDADVVMMLR  221 (305)
T ss_pred             ECCHHHHhCCCCEEEECC
Confidence            245678999999999754

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=96.89  E-value=0.0033  Score=62.44  Aligned_cols=93  Identities=13%  Similarity=0.228  Sum_probs=75.4

Q ss_pred             CCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh-----CCC-------EEEEEeCC----------------
Q 024306          118 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR-----HHA-------TVSIVHAL----------------  169 (269)
Q Consensus       118 ~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~-----~ga-------~Vti~~~~----------------  169 (269)
                      ++-.|++..++-.+.++++.+++++|+|.+ |..++.+|..     .|.       ++++++++                
T Consensus       303 V~lAgll~A~r~~g~~l~d~riv~~GAGsA-gigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~  381 (581)
T PLN03129        303 VALAGLLAALRATGGDLADQRILFAGAGEA-GTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKK  381 (581)
T ss_pred             HHHHHHHHHHHHhCCchhhceEEEECCCHH-HHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHH
Confidence            355778899999999999999999999998 9999998876     365       58888654                


Q ss_pred             --------CCCHhhhcCC--CCEEEeccCCCCcccCCCcC------CCcEEEEeeecCC
Q 024306          170 --------TKNPEQITSE--ADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  212 (269)
Q Consensus       170 --------t~~l~~~~~~--aDiVIsAtg~p~~i~~~~~~------~g~vViDv~~~~~  212 (269)
                              ..+|.+.++.  +|++|-+++.++.|++++++      +.-+|+=++ ||.
T Consensus       382 ~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLS-NPt  439 (581)
T PLN03129        382 PFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALS-NPT  439 (581)
T ss_pred             HHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                    1257788888  89999999888889999876      456777776 554

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.88  E-value=0.002  Score=59.12  Aligned_cols=73  Identities=26%  Similarity=0.347  Sum_probs=55.7

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC----------------CCHhhhcCCCCEEEeccCCCC---ccc
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT----------------KNPEQITSEADIVIAAAGVAN---LVR  194 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t----------------~~l~~~~~~aDiVIsAtg~p~---~i~  194 (269)
                      -++|.|||.|.+ |..++..|.+.|.  .|++++++.                .+..+.++++|+||.+++...   ++.
T Consensus         6 ~~~I~IIG~G~m-G~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~   84 (307)
T PRK07502          6 FDRVALIGIGLI-GSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAA   84 (307)
T ss_pred             CcEEEEEeeCHH-HHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHH
Confidence            368999999886 9999999998884  788887652                234566789999999998532   111


Q ss_pred             --CCCcCCCcEEEEeee
Q 024306          195 --GSWLKPGAVVLDVGT  209 (269)
Q Consensus       195 --~~~~~~g~vViDv~~  209 (269)
                        ...++++.+|+|++.
T Consensus        85 ~l~~~l~~~~iv~dvgs  101 (307)
T PRK07502         85 EIAPHLKPGAIVTDVGS  101 (307)
T ss_pred             HHHhhCCCCCEEEeCcc
Confidence              235788999999985

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=96.88  E-value=0.023  Score=53.20  Aligned_cols=141  Identities=12%  Similarity=0.056  Sum_probs=95.4

Q ss_pred             HHHHHHHHcCCeEEEEEcCCC--CCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceecc
Q 024306           28 NKIKACEEVGIKSIVTEFADG--CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGN  105 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~--~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~  105 (269)
                      +-..+++++|..+.+......  ...|.+.+.++-|..-  +|+|.+-.|-..      .+..+....+   +-.+|.|.
T Consensus        63 SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~rvls~y--~D~iviR~~~~~------~~~~~a~~~~---vPVINa~~  131 (331)
T PRK02102         63 AFEVAAIDLGAHVTYLGPNDSQLGKKESIEDTARVLGRM--YDGIEYRGFKQE------IVEELAKYSG---VPVWNGLT  131 (331)
T ss_pred             HHHHHHHHcCCCEEEcCcccccCCCCcCHHHHHHHHhhc--CCEEEEECCchH------HHHHHHHhCC---CCEEECCC
Confidence            456789999999986632110  1236688888888773  889999876332      2333322212   22445422


Q ss_pred             cccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCCC--------------
Q 024306          106 LAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHALT--------------  170 (269)
Q Consensus       106 l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~t--------------  170 (269)
                             +...||=+.+=+--++++-..++|++++++|-+ ..|.+.++..+...|++|++++...              
T Consensus       132 -------~~~HPtQaLaDl~Ti~e~~g~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~  204 (331)
T PRK02102        132 -------DEWHPTQMLADFMTMKEHFGPLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREI  204 (331)
T ss_pred             -------CCCChHHHHHHHHHHHHHhCCCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHH
Confidence                   245688888754445444457999999999996 3479999999999999999996431              


Q ss_pred             -----------CCHhhhcCCCCEEEec
Q 024306          171 -----------KNPEQITSEADIVIAA  186 (269)
Q Consensus       171 -----------~~l~~~~~~aDiVIsA  186 (269)
                                 .++.+.+++||+|.+-
T Consensus       205 ~~~~g~~~~~~~d~~ea~~~aDvvyt~  231 (331)
T PRK02102        205 AKETGAKITITEDPEEAVKGADVIYTD  231 (331)
T ss_pred             HHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence                       3556889999999975

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.87  E-value=0.0026  Score=56.22  Aligned_cols=59  Identities=10%  Similarity=0.135  Sum_probs=44.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-CCH-----------------hhhcCCCCEEEeccCCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KNP-----------------EQITSEADIVIAAAGVAN  191 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~l-----------------~~~~~~aDiVIsAtg~p~  191 (269)
                      ++++|++|+|||+|.+ |.-=+..|.+.||.|+|+...- +++                 .+.+..+++||.||.-+.
T Consensus        21 l~~~~~~VLVVGGG~V-A~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~   97 (223)
T PRK05562         21 LLSNKIKVLIIGGGKA-AFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEK   97 (223)
T ss_pred             EECCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHH
Confidence            3567999999999886 7666778889999999995442 111                 234678999999998643

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.85  E-value=0.0026  Score=52.03  Aligned_cols=53  Identities=26%  Similarity=0.419  Sum_probs=43.5

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHhhhcCCCCEEEeccCCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t------------------------~~l~~~~~~aDiVIsAtg~p  190 (269)
                      ||.|||++|.||..++..|..++.  ++.++++..                        .+..+.+++||+||.+.|.|
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~   80 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP   80 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence            799999966679999999998884  688887651                        23467889999999999865

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=96.84  E-value=0.026  Score=52.81  Aligned_cols=142  Identities=10%  Similarity=0.002  Sum_probs=97.1

Q ss_pred             HHHHHHHHcCCeEEEEEcCC--CCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceecc
Q 024306           28 NKIKACEEVGIKSIVTEFAD--GCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGN  105 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~--~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~  105 (269)
                      +-..++.++|.++.++.-..  -...|.+.+.++-|+.-  +|+|.+-.|-..      .+..+....+   +-.+|.+ 
T Consensus        62 SFE~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y--~D~iviR~~~~~------~~~~~a~~~~---vPVINa~-  129 (334)
T PRK12562         62 SFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRM--YDGIQYRGHGQE------VVETLAEYAG---VPVWNGL-  129 (334)
T ss_pred             HHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHh--CCEEEEECCchH------HHHHHHHhCC---CCEEECC-
Confidence            45678999999999874321  01246688888888873  899999876332      2333322212   3345642 


Q ss_pred             cccCCCCCccccCCHHH-HHHHHHHhCC-CCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCCC------------
Q 024306          106 LAMRGREPLFIPCTPKG-CIELLIRSGV-EIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHALT------------  170 (269)
Q Consensus       106 l~~g~~~~~~~p~t~~g-~~~~l~~~~~-~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~t------------  170 (269)
                            ++...||=+.+ +..+.++.+. .++|.+++++|-+ ..|.+.++.+++..|++|+++....            
T Consensus       130 ------~~~~HPtQaLaDl~Ti~e~~g~~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~  203 (334)
T PRK12562        130 ------TNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECS  203 (334)
T ss_pred             ------CCCCChHHHHHHHHHHHHHhCCCCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHH
Confidence                  23356887777 4455455553 5899999999985 3469999999999999999986432            


Q ss_pred             -------------CCHhhhcCCCCEEEecc
Q 024306          171 -------------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       171 -------------~~l~~~~~~aDiVIsAt  187 (269)
                                   .++.+.+++||+|.+-.
T Consensus       204 ~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~  233 (334)
T PRK12562        204 ALAQKHGGKITLTEDIAAGVKGADFIYTDV  233 (334)
T ss_pred             HHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence                         35667889999999754

>PLN02342 ornithine carbamoyltransferase

Probab=96.84  E-value=0.023  Score=53.44  Aligned_cols=141  Identities=14%  Similarity=0.083  Sum_probs=97.4

Q ss_pred             HHHHHHHHcCCeEEEEEcCCC--CCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceecc
Q 024306           28 NKIKACEEVGIKSIVTEFADG--CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGN  105 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~--~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~  105 (269)
                      +-..++.++|.++.++.-...  ...|.+.+.++-|..-  +|+|.+-.|-..      .+..+...   -.+-.+|.+ 
T Consensus       102 SFE~A~~~LGg~~i~l~~~~ss~~kGESl~DTarvLs~y--~D~IviR~~~~~------~~~~la~~---~~vPVINA~-  169 (348)
T PLN02342        102 SFETGFFLLGGHALYLGPDDIQLGKREETRDIARVLSRY--NDIIMARVFAHQ------DVLDLAEY---SSVPVINGL-  169 (348)
T ss_pred             HHHHHHHHcCCcEEEeCcccccCCCCcCHHHHHHHHHHh--CCEEEEeCCChH------HHHHHHHh---CCCCEEECC-
Confidence            356789999999988742221  0235688888888773  889999877332      22222221   123345642 


Q ss_pred             cccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC---------------
Q 024306          106 LAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---------------  169 (269)
Q Consensus       106 l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~---------------  169 (269)
                            .+.+.||=+.+ +..+.++.| +++|++|+++|-+..|.+.++..+...|++|++++..               
T Consensus       170 ------~~~~HPtQaLaDl~Ti~e~~G-~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~  242 (348)
T PLN02342        170 ------TDYNHPCQIMADALTIIEHIG-RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAA  242 (348)
T ss_pred             ------CCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHh
Confidence                  22356887777 444445554 6999999999998888999999999999999999533               


Q ss_pred             -------CCCHhhhcCCCCEEEecc
Q 024306          170 -------TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       170 -------t~~l~~~~~~aDiVIsAt  187 (269)
                             +.++.+.+++||+|.+-+
T Consensus       243 g~~~~~~~~d~~eav~~aDVvy~~~  267 (348)
T PLN02342        243 GISKIEITNDPAEAVKGADVVYTDV  267 (348)
T ss_pred             CCCcEEEEcCHHHHhCCCCEEEECC
Confidence                   235578899999999763

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=96.83  E-value=0.0023  Score=59.58  Aligned_cols=71  Identities=17%  Similarity=0.185  Sum_probs=55.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEeccCCC---CcccC-
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVA---NLVRG-  195 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIsAtg~p---~~i~~-  195 (269)
                      .++||+|.|||.|.. |+++|..|...|.+|++.++..             .++.+.+++||+|+..++.+   +.+.. 
T Consensus        13 ~LkgKtVGIIG~GsI-G~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~~e   91 (335)
T PRK13403         13 LLQGKTVAVIGYGSQ-GHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKAE   91 (335)
T ss_pred             hhCcCEEEEEeEcHH-HHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHHHH
Confidence            368999999999887 9999999999999999986542             15778899999999988843   23332 


Q ss_pred             --CCcCCCcEE
Q 024306          196 --SWLKPGAVV  204 (269)
Q Consensus       196 --~~~~~g~vV  204 (269)
                        ..+++|+++
T Consensus        92 il~~MK~GaiL  102 (335)
T PRK13403         92 VEENLREGQML  102 (335)
T ss_pred             HHhcCCCCCEE
Confidence              246777654

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=96.81  E-value=0.037  Score=51.91  Aligned_cols=141  Identities=10%  Similarity=0.076  Sum_probs=96.7

Q ss_pred             HHHHHHHHcCCeEEEEEcCCC--CCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceecc
Q 024306           28 NKIKACEEVGIKSIVTEFADG--CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGN  105 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~--~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~  105 (269)
                      +-..++.++|.++.++.-...  ...|.+.+.++-|+.-  +|+|.+-.+  .+-.    +..+...   -.+-.+|.+ 
T Consensus        59 SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dtarvls~y--~D~iviR~~--~~~~----~~~~a~~---~~vPVINa~-  126 (338)
T PRK02255         59 SFETAMTQLGGHAQYLAPGQIQLGGHESLEDTARVLSRL--VDIIMARVD--RHQT----VVELAKY---ATVPVINGM-  126 (338)
T ss_pred             HHHHHHHHcCCeEEEeCcccccCCCCcCHHHHHHHHHHh--CcEEEEecC--ChHH----HHHHHHh---CCCCEEECC-
Confidence            456789999999888753211  1236688888888873  888988776  3222    2222211   123345531 


Q ss_pred             cccCCCCCccccCCHHH-HHHHHHHhC--CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC-------------
Q 024306          106 LAMRGREPLFIPCTPKG-CIELLIRSG--VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-------------  169 (269)
Q Consensus       106 l~~g~~~~~~~p~t~~g-~~~~l~~~~--~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-------------  169 (269)
                            .+...||=+.+ +..+.++.+  .+++|++|+++|-+..|.+.++..+...|++|++|+..             
T Consensus       127 ------~~~~HPtQaLaDl~Ti~e~~g~g~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~  200 (338)
T PRK02255        127 ------SDYNHPTQELGDLFTMIEHLPEGKKLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAE  200 (338)
T ss_pred             ------CCCCChHHHHHHHHHHHHHhCCCCCCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHH
Confidence                  22356887777 455555554  36999999999998788999999999999999999643             


Q ss_pred             ------------CCCHhhhcCCCCEEEec
Q 024306          170 ------------TKNPEQITSEADIVIAA  186 (269)
Q Consensus       170 ------------t~~l~~~~~~aDiVIsA  186 (269)
                                  +.++.+.+++||+|.+-
T Consensus       201 ~~~~~~g~~~~~~~d~~eav~~aDvvy~~  229 (338)
T PRK02255        201 ENCEVSGGSVLVTDDVDEAVKDADFVYTD  229 (338)
T ss_pred             HHHHhcCCeEEEEcCHHHHhCCCCEEEEc
Confidence                        14567889999999973

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=96.79  E-value=0.03  Score=51.74  Aligned_cols=140  Identities=16%  Similarity=0.202  Sum_probs=96.2

Q ss_pred             HHHHHHHHcCCeEEEEEcCCC--CCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceecc
Q 024306           28 NKIKACEEVGIKSIVTEFADG--CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGN  105 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~--~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~  105 (269)
                      +-..+++++|.++.++.-...  ...|.+.+.+.-|+.-  +|+|.+-.|-..  ....+.+..       .+-.+|.|.
T Consensus        56 SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~vls~y--~D~iv~R~~~~~--~~~~~a~~~-------~vPVINa~~  124 (304)
T TIGR00658        56 SFEVAAYQLGGHPLYLNPNDLQLGRGESIKDTARVLSRY--VDGIMARVYKHE--DVEELAKYA-------SVPVINGLT  124 (304)
T ss_pred             HHHHHHHHcCCCEEEeCCccccCCCCCCHHHHHHHHHHh--CCEEEEECCChH--HHHHHHHhC-------CCCEEECCC
Confidence            356788999999987743221  0236688888888873  889999877332  223332222       233456421


Q ss_pred             cccCCCCCccccCCHHHH-HHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------
Q 024306          106 LAMRGREPLFIPCTPKGC-IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------  170 (269)
Q Consensus       106 l~~g~~~~~~~p~t~~g~-~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------  170 (269)
                             ....||=+.+= ..+.++.+ .++|.+|+++|-...|.+.++.+|...|++|++++...              
T Consensus       125 -------~~~HPtQaL~Dl~Ti~e~~g-~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~  196 (304)
T TIGR00658       125 -------DLFHPCQALADLLTIIEHFG-KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEI  196 (304)
T ss_pred             -------CCCChHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHH
Confidence                   23568877774 44444544 59999999999977789999999999999999996331              


Q ss_pred             -----------CCHhhhcCCCCEEEec
Q 024306          171 -----------KNPEQITSEADIVIAA  186 (269)
Q Consensus       171 -----------~~l~~~~~~aDiVIsA  186 (269)
                                 .++.+.+++||+|.+-
T Consensus       197 ~~~~g~~~~~~~d~~~a~~~aDvvy~~  223 (304)
T TIGR00658       197 AKENGGSVELTHDPVEAVKGADVIYTD  223 (304)
T ss_pred             HHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence                       3556789999999974

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PLN02527 aspartate carbamoyltransferase

Probab=96.77  E-value=0.038  Score=51.16  Aligned_cols=143  Identities=13%  Similarity=0.112  Sum_probs=96.1

Q ss_pred             HHHHHHHHHcCCeEEEEEcCC-CC---CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccce
Q 024306           27 RNKIKACEEVGIKSIVTEFAD-GC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLN  102 (269)
Q Consensus        27 ~~~~~~~~~~Gi~~~~~~~~~-~~---~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n  102 (269)
                      -+-..++.++|.++.++.-.. +.   ..|.+.+.++-|+.-  +|+|.+-.|-..  ...++.+..       .+-.+|
T Consensus        55 ~SFe~A~~~LGg~~i~l~~~~~~s~~~kgEs~~Dta~vls~y--~D~iviR~~~~~--~~~~~a~~~-------~vPVIN  123 (306)
T PLN02527         55 LSFESAMKRLGGEVLTTENAGEFSSAAKGETLEDTIRTVEGY--SDIIVLRHFESG--AARRAAATA-------EIPVIN  123 (306)
T ss_pred             HHHHHHHHHcCCCEEEeCCCCCccccCCCcCHHHHHHHHHHh--CcEEEEECCChh--HHHHHHHhC-------CCCEEE
Confidence            346678999999999886531 11   146678888888773  889999877433  223332221       133445


Q ss_pred             ecccccCCCCCccccCCHHHH-HHHHHHhCCCCccceEEEEcCC-c-ccHHHHHHHHHhC-CCEEEEEeCC---------
Q 024306          103 IGNLAMRGREPLFIPCTPKGC-IELLIRSGVEIMGKNAVVIGRS-N-IVGLPTSLLLQRH-HATVSIVHAL---------  169 (269)
Q Consensus       103 ~g~l~~g~~~~~~~p~t~~g~-~~~l~~~~~~l~gk~v~ViG~g-g-~vg~~~a~~L~~~-ga~Vti~~~~---------  169 (269)
                      .|.      .+...||=+.+= ..+.++.+ +++|++|+++|-+ . -+.+.++..|... |++|+++...         
T Consensus       124 a~~------g~~~HPtQ~LaDl~Ti~e~~g-~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~  196 (306)
T PLN02527        124 AGD------GPGQHPTQALLDVYTIQREIG-RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIK  196 (306)
T ss_pred             CCC------CCCCChHHHHHHHHHHHHHhC-CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHH
Confidence            421      234569988884 44444454 6999999999976 2 2588888888877 8999998643         


Q ss_pred             ------------CCCHhhhcCCCCEEEecc
Q 024306          170 ------------TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       170 ------------t~~l~~~~~~aDiVIsAt  187 (269)
                                  +.++.+.+++||+|.+..
T Consensus       197 ~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~  226 (306)
T PLN02527        197 DYLTSKGVEWEESSDLMEVASKCDVLYQTR  226 (306)
T ss_pred             HHHHHcCCEEEEEcCHHHHhCCCCEEEECC
Confidence                        246678999999999843

>PRK06545 prephenate dehydrogenase; Validated

Probab=96.76  E-value=0.0027  Score=59.82  Aligned_cols=73  Identities=27%  Similarity=0.421  Sum_probs=54.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------------CCHhhhcCCCCEEEeccCCCC---cc--
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------------KNPEQITSEADIVIAAAGVAN---LV--  193 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------------~~l~~~~~~aDiVIsAtg~p~---~i--  193 (269)
                      ++|.|||.|.+ |.+++..|.+.|..|.+..+..                  .++.+.+++||+||-|++...   ++  
T Consensus         1 ~~I~iIG~Gli-G~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~   79 (359)
T PRK06545          1 RTVLIVGLGLI-GGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALLAE   79 (359)
T ss_pred             CeEEEEEeCHH-HHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHHHH
Confidence            47999999887 9999999999998777775432                  233456789999999998432   22  


Q ss_pred             -cCCCcCCCcEEEEeeec
Q 024306          194 -RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       194 -~~~~~~~g~vViDv~~~  210 (269)
                       .+..++++++|.|++..
T Consensus        80 l~~~~l~~~~ivtDv~Sv   97 (359)
T PRK06545         80 LADLELKPGVIVTDVGSV   97 (359)
T ss_pred             HhhcCCCCCcEEEeCccc
Confidence             22136789999999865

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.75  E-value=0.0032  Score=57.95  Aligned_cols=53  Identities=21%  Similarity=0.348  Sum_probs=42.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCCC------------------------CHhhhcCCCCEEEeccCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALTK------------------------NPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t~------------------------~l~~~~~~aDiVIsAtg~p  190 (269)
                      ++|.|||+|++ |++++..|+.+|.  +|+++++...                        .-.+.+++||+||.++|.|
T Consensus         1 ~kI~IIGaG~v-G~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~   79 (306)
T cd05291           1 RKVVIIGAGHV-GSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP   79 (306)
T ss_pred             CEEEEECCCHH-HHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence            47999999886 9999999999993  7999976421                        1124578999999999975

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=96.75  E-value=0.0015  Score=59.21  Aligned_cols=72  Identities=26%  Similarity=0.237  Sum_probs=54.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC---------------HhhhcCCCCEEEeccCCCC---ccc--CCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------PEQITSEADIVIAAAGVAN---LVR--GSW  197 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---------------l~~~~~~aDiVIsAtg~p~---~i~--~~~  197 (269)
                      +|.|||.|.+ |..++..|.+.|.+|++++++...               ..+.+++||+||.|++...   .+.  ...
T Consensus         2 ~I~IIG~G~m-G~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~~l~~~   80 (279)
T PRK07417          2 KIGIVGLGLI-GGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEQLIPA   80 (279)
T ss_pred             eEEEEeecHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHHHHHHh
Confidence            6899999886 999999999999999999875311               1235788999999998422   121  124


Q ss_pred             cCCCcEEEEeeec
Q 024306          198 LKPGAVVLDVGTC  210 (269)
Q Consensus       198 ~~~g~vViDv~~~  210 (269)
                      ++++++|.|++.-
T Consensus        81 l~~~~ii~d~~Sv   93 (279)
T PRK07417         81 LPPEAIVTDVGSV   93 (279)
T ss_pred             CCCCcEEEeCcch
Confidence            5788999998854

>PRK14805 ornithine carbamoyltransferase; Provisional

Probab=96.72  E-value=0.029  Score=51.82  Aligned_cols=140  Identities=11%  Similarity=0.078  Sum_probs=95.4

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceec
Q 024306           28 NKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG  104 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~---~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g  104 (269)
                      +-..++.++|.++.++.- .+.   .-|.+.+.++-|+.-  +|+|.+-.|-..      .+..+....   .+-.+|.|
T Consensus        55 SFE~A~~~LGg~~i~l~~-~~ss~~kgEsl~Dt~~vls~y--~D~iviR~~~~~------~~~~~a~~~---~vPVINa~  122 (302)
T PRK14805         55 SFDIGINKLGGHCLYLDQ-QNGALGKRESVADFAANLSCW--ADAIVARVFSHS------TIEQLAEHG---SVPVINAL  122 (302)
T ss_pred             HHHHHHHHcCCcEEECCC-CcCcCCCCcCHHHHHHHHHHh--CCEEEEeCCChh------HHHHHHHhC---CCCEEECC
Confidence            456789999999988642 111   236688888888873  899999876332      222222221   23445652


Q ss_pred             ccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------
Q 024306          105 NLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------  170 (269)
Q Consensus       105 ~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------  170 (269)
                      .       +...||=+.+=+--+++...+++|++|+++|-+..|.+.++.+++..|++|++++...              
T Consensus       123 ~-------~~~HPtQaL~Dl~Ti~e~~g~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~  195 (302)
T PRK14805        123 C-------DLYHPCQALADFLTLAEQFGDVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQEL  195 (302)
T ss_pred             C-------CCCChHHHHHHHHHHHHHhCCcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHH
Confidence            2       2356887777444444443479999999999988889999999999999999996432              


Q ss_pred             -----------CCHhhhcCCCCEEEecc
Q 024306          171 -----------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       171 -----------~~l~~~~~~aDiVIsAt  187 (269)
                                 .++ +.+++||+|.+-+
T Consensus       196 ~~~~g~~~~~~~d~-~a~~~aDvvy~~~  222 (302)
T PRK14805        196 AAKSGGKLVLTSDI-EAIEGHDAIYTDT  222 (302)
T ss_pred             HHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence                       232 4588999999744

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=96.68  E-value=0.011  Score=55.23  Aligned_cols=34  Identities=21%  Similarity=0.453  Sum_probs=28.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEE
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIV  166 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~  166 (269)
                      ..++...|+|||+||. |-|++++|+..|+ ++=++
T Consensus        62 ~~Lk~s~VLVVGaGGL-GcPa~~YLaaaGvG~lGiV   96 (427)
T KOG2017|consen   62 LSLKNSSVLVVGAGGL-GCPAAQYLAAAGVGRLGIV   96 (427)
T ss_pred             cccCCccEEEEccCCC-CCHHHHHHHHcCCCeeccc
Confidence            4578899999999997 9999999999886 45554

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=96.68  E-value=0.0061  Score=56.95  Aligned_cols=75  Identities=20%  Similarity=0.344  Sum_probs=59.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhC-CC-EEEEEeCCC---------------------CCHhhhcCCCCEEEeccCCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRH-HA-TVSIVHALT---------------------KNPEQITSEADIVIAAAGVAN  191 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~-ga-~Vti~~~~t---------------------~~l~~~~~~aDiVIsAtg~p~  191 (269)
                      .-+.+.|||+|.- ++.-++.+... +. +|.|..|+.                     .+.++.+++|||||++|+...
T Consensus       129 da~~laiIGaG~q-A~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~  207 (330)
T COG2423         129 DASTLAIIGAGAQ-ARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE  207 (330)
T ss_pred             CCcEEEEECCcHH-HHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC
Confidence            3567999999886 88888877654 33 688887762                     356788999999999999644


Q ss_pred             -cccCCCcCCCcEEEEeeec
Q 024306          192 -LVRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       192 -~i~~~~~~~g~vViDv~~~  210 (269)
                       +++.+|+++|+.|.=+|.+
T Consensus       208 Pil~~~~l~~G~hI~aiGad  227 (330)
T COG2423         208 PVLKAEWLKPGTHINAIGAD  227 (330)
T ss_pred             CeecHhhcCCCcEEEecCCC
Confidence             5899999999999888854

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=96.68  E-value=0.037  Score=51.11  Aligned_cols=140  Identities=12%  Similarity=0.117  Sum_probs=95.1

Q ss_pred             HHHHHHHHcCCeEEEEEcCCC--CCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceecc
Q 024306           28 NKIKACEEVGIKSIVTEFADG--CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGN  105 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~--~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~  105 (269)
                      +-..+++++|.++.++.-...  ...|.+.+.++-|+.-  +|+|.+-.|-..  ....+.+.       ..+-.+|.|.
T Consensus        60 SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~Dt~~~l~~~--~D~iv~R~~~~~--~~~~~a~~-------~~vPVINag~  128 (304)
T PRK00779         60 SFEVGMAQLGGHAIFLSPRDTQLGRGEPIEDTARVLSRY--VDAIMIRTFEHE--TLEELAEY-------STVPVINGLT  128 (304)
T ss_pred             HHHHHHHHcCCcEEEECcccccCCCCcCHHHHHHHHHHh--CCEEEEcCCChh--HHHHHHHh-------CCCCEEeCCC
Confidence            456799999999888753221  0135688888888773  788888776332  12222222       1234567542


Q ss_pred             cccCCCCCccccCCHHHH-HHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------
Q 024306          106 LAMRGREPLFIPCTPKGC-IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------  170 (269)
Q Consensus       106 l~~g~~~~~~~p~t~~g~-~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------  170 (269)
                             ....||=+.+= ..+.++. ..++|++|+++|-.+-|.+.++..|...|++|++++...              
T Consensus       129 -------~~~HPtQaL~Dl~Ti~e~~-g~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~  200 (304)
T PRK00779        129 -------DLSHPCQILADLLTIYEHR-GSLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKE  200 (304)
T ss_pred             -------CCCChHHHHHHHHHHHHHh-CCcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHH
Confidence                   23458776664 3444444 469999999999966679999999999999999996432              


Q ss_pred             --------CCHhhhcCCCCEEEec
Q 024306          171 --------KNPEQITSEADIVIAA  186 (269)
Q Consensus       171 --------~~l~~~~~~aDiVIsA  186 (269)
                              .++.+.+++||+|.+-
T Consensus       201 ~g~~~~~~~d~~~a~~~aDvvy~~  224 (304)
T PRK00779        201 TGASIEVTHDPKEAVKGADVVYTD  224 (304)
T ss_pred             cCCeEEEEcCHHHHhCCCCEEEec
Confidence                    3567888999999975

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.67  E-value=0.0029  Score=52.71  Aligned_cols=51  Identities=27%  Similarity=0.296  Sum_probs=43.5

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------CHhhhcCCCCEEEeccCC
Q 024306          139 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       139 v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------~l~~~~~~aDiVIsAtg~  189 (269)
                      |+|+|++|.+|+.++..|.++|.+|+.+.|+..                   .+.+.++.+|.||.+.|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            789999888999999999999999999987632                   235678899999999884

...

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.67  E-value=0.0033  Score=59.60  Aligned_cols=76  Identities=18%  Similarity=0.230  Sum_probs=57.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhC-CCEEEEEeCCC---CCHhhhcCCCCEEEeccCCCC---ccc---C--CCcCCCc
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALT---KNPEQITSEADIVIAAAGVAN---LVR---G--SWLKPGA  202 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t---~~l~~~~~~aDiVIsAtg~p~---~i~---~--~~~~~g~  202 (269)
                      .-.+|+|||.+|.+|..++..|.+. +.+|+.+.+..   .+..+.+++||+||-|++...   ++.   +  ..+++++
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~~~~~l~~~~   82 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPGSLDPATLLQRADVLIFSAPIRHTAALIEEYVALAGGRAAGQ   82 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhhcCCCCCe
Confidence            4568999999444599999999875 67888887642   346678899999999999422   222   1  2378999


Q ss_pred             EEEEeeec
Q 024306          203 VVLDVGTC  210 (269)
Q Consensus       203 vViDv~~~  210 (269)
                      +|.|++..
T Consensus        83 iVtDVgSv   90 (370)
T PRK08818         83 LWLDVTSI   90 (370)
T ss_pred             EEEECCCC
Confidence            99999964

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=96.67  E-value=0.048  Score=52.72  Aligned_cols=144  Identities=13%  Similarity=0.033  Sum_probs=95.1

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceec
Q 024306           28 NKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG  104 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~---~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g  104 (269)
                      +-..++.++|..+.++.=+.++   ..|.+.+...-|+.-  +|+|.+-.|-..  ...++.+..       .+-.+|.|
T Consensus       143 SFE~A~~~LGg~~i~l~~~~~ss~~kGESi~DTarvLs~y--~D~IviR~~~~~--~~~e~A~~s-------~vPVINAg  211 (429)
T PRK11891        143 SFGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGY--VDALVIRHPEQG--SVAEFARAT-------NLPVINGG  211 (429)
T ss_pred             HHHHHHHHcCCeEEEeCCccccCCCCCCCHHHHHHHHHHh--CCEEEEeCCchh--HHHHHHHhC-------CCCEEECC
Confidence            4567889999999887421111   134577777777663  788888866332  223332221       23345642


Q ss_pred             ccccCCCCCccccCCHHH-HHHHHHHhCC---CCccceEEEEcCC--cccHHHHHHHHHhC-CCEEEEEeCC--------
Q 024306          105 NLAMRGREPLFIPCTPKG-CIELLIRSGV---EIMGKNAVVIGRS--NIVGLPTSLLLQRH-HATVSIVHAL--------  169 (269)
Q Consensus       105 ~l~~g~~~~~~~p~t~~g-~~~~l~~~~~---~l~gk~v~ViG~g--g~vg~~~a~~L~~~-ga~Vti~~~~--------  169 (269)
                            +.+.+.||=+.+ ++.+.++.+.   .++|++|+++|-+  +-+.+.++..++.. |++|++++..        
T Consensus       212 ------dg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~  285 (429)
T PRK11891        212 ------DGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYI  285 (429)
T ss_pred             ------CCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHH
Confidence                  124566998877 5555565542   4899999999996  44588888888776 9999998643        


Q ss_pred             -------------CCCHhhhcCCCCEEEeccC
Q 024306          170 -------------TKNPEQITSEADIVIAAAG  188 (269)
Q Consensus       170 -------------t~~l~~~~~~aDiVIsAtg  188 (269)
                                   +.++.+++++||+|++..+
T Consensus       286 ~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~  317 (429)
T PRK11891        286 VEQISRNGHVIEQTDDLAAGLRGADVVYATRI  317 (429)
T ss_pred             HHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence                         2456788999999998553

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.64  E-value=0.0042  Score=57.99  Aligned_cols=70  Identities=21%  Similarity=0.233  Sum_probs=53.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCC---CcccC-
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVA---NLVRG-  195 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p---~~i~~-  195 (269)
                      ++||+|.|||.|.+ |++++..|...|.+|.+..+..              .+..+.+++||+|+.+++..   ..+.. 
T Consensus        15 L~gktIgIIG~Gsm-G~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~~~V~~~~   93 (330)
T PRK05479         15 IKGKKVAIIGYGSQ-GHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQAEVYEEE   93 (330)
T ss_pred             hCCCEEEEEeeHHH-HHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHHHHHHHHH
Confidence            68999999999986 9999999999999988876541              24567789999999999832   12211 


Q ss_pred             --CCcCCCcEE
Q 024306          196 --SWLKPGAVV  204 (269)
Q Consensus       196 --~~~~~g~vV  204 (269)
                        ..+++|++|
T Consensus        94 I~~~Lk~g~iL  104 (330)
T PRK05479         94 IEPNLKEGAAL  104 (330)
T ss_pred             HHhcCCCCCEE
Confidence              235677665

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.64  E-value=0.0041  Score=59.85  Aligned_cols=37  Identities=27%  Similarity=0.425  Sum_probs=33.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      ++++|+|+|+|+|++ |+++|..|+++|++|+++.+..
T Consensus         2 ~~~~k~v~iiG~g~~-G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          2 ELKGKKVLVVGAGVS-GLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCc
Confidence            468999999999995 9999999999999999998763

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.64  E-value=0.002  Score=51.03  Aligned_cols=75  Identities=24%  Similarity=0.262  Sum_probs=51.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC-CE-EEEEeCCC---CCH-------------------hhhcCCCCEEEeccCCC--C
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHH-AT-VSIVHALT---KNP-------------------EQITSEADIVIAAAGVA--N  191 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~g-a~-Vti~~~~t---~~l-------------------~~~~~~aDiVIsAtg~p--~  191 (269)
                      ||.|+|+.|.+|+.++.+|.++- .+ +.++.++.   +.+                   .+.+.++|+||.|++.-  .
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~   80 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK   80 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence            68999988889999999998854 35 44554443   111                   13468999999999841  1


Q ss_pred             cccCCCcCCCcEEEEeeecCC
Q 024306          192 LVRGSWLKPGAVVLDVGTCPV  212 (269)
Q Consensus       192 ~i~~~~~~~g~vViDv~~~~~  212 (269)
                      -+-+..++.|..|||.+....
T Consensus        81 ~~~~~~~~~g~~ViD~s~~~R  101 (121)
T PF01118_consen   81 ELAPKLLKAGIKVIDLSGDFR  101 (121)
T ss_dssp             HHHHHHHHTTSEEEESSSTTT
T ss_pred             HHHHHHhhCCcEEEeCCHHHh
Confidence            233344788999999997653

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.61  E-value=0.0041  Score=60.18  Aligned_cols=71  Identities=21%  Similarity=0.348  Sum_probs=54.1

Q ss_pred             eEEEEc-CCcccHHHHHHHHHhCCCEEEEEeCCCC---------------CHhhhcCCCCEEEeccCCCC---ccc--CC
Q 024306          138 NAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPEQITSEADIVIAAAGVAN---LVR--GS  196 (269)
Q Consensus       138 ~v~ViG-~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~l~~~~~~aDiVIsAtg~p~---~i~--~~  196 (269)
                      +|.||| .|.+ |.+++..|.+.|.+|+++.++..               +..+.+.++|+||.+++...   .+.  ..
T Consensus         2 kI~IIGG~G~m-G~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~   80 (437)
T PRK08655          2 KISIIGGTGGL-GKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAP   80 (437)
T ss_pred             EEEEEecCCHH-HHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHh
Confidence            689998 4664 99999999999999999877531               34456788999999998422   221  23


Q ss_pred             CcCCCcEEEEeee
Q 024306          197 WLKPGAVVLDVGT  209 (269)
Q Consensus       197 ~~~~g~vViDv~~  209 (269)
                      .++++++|+|++.
T Consensus        81 ~l~~~~iViDvsS   93 (437)
T PRK08655         81 HVKEGSLLMDVTS   93 (437)
T ss_pred             hCCCCCEEEEccc
Confidence            4688999999995

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.60  E-value=0.0043  Score=52.83  Aligned_cols=49  Identities=29%  Similarity=0.390  Sum_probs=38.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC--------------------------------------CCCHhhhcCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL--------------------------------------TKNPEQITSE  179 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~--------------------------------------t~~l~~~~~~  179 (269)
                      +|.|||+|.+ |+.+|..++..|..|+++.+.                                      +.++.+.. +
T Consensus         1 ~V~ViGaG~m-G~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~   78 (180)
T PF02737_consen    1 KVAVIGAGTM-GRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D   78 (180)
T ss_dssp             EEEEES-SHH-HHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred             CEEEEcCCHH-HHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence            6899999887 999999999999999999654                                      13455555 9


Q ss_pred             CCEEEeccC
Q 024306          180 ADIVIAAAG  188 (269)
Q Consensus       180 aDiVIsAtg  188 (269)
                      ||+||-|++
T Consensus        79 adlViEai~   87 (180)
T PF02737_consen   79 ADLVIEAIP   87 (180)
T ss_dssp             ESEEEE-S-
T ss_pred             hheehhhcc
Confidence            999999987

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=96.59  E-value=0.055  Score=51.14  Aligned_cols=150  Identities=16%  Similarity=0.091  Sum_probs=95.2

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCcCEEEEeCCCC---CCCCHHHHHhcCCc-ccc-c--cc
Q 024306           28 NKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLP---QHLDEGKILDAVSL-EKD-V--DG   97 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~---~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~---~~~~~~~i~~~i~p-~kd-v--dg   97 (269)
                      +-..++.++|.++.++.-. ++   .-|-+.+.++-|+.-  +|+|.+-.|-.   .+-...++.+.... -|| |  -.
T Consensus        59 SFE~A~~~LGg~~i~l~~~-~s~~~kgEsl~Dtarvls~y--~D~Iv~R~~~~~~~~~~~l~~~a~~~~~~~~~~~~~s~  135 (357)
T TIGR03316        59 SFASAMNLLGLHAQDLDEG-KSQIGHGETVRETAEMISFF--ADGIGIRDDMYIGVGNAYMREVAKYVQEGYKDGVLEQR  135 (357)
T ss_pred             HHHHHHHHcCCcEEEeCCc-cccCCCCCCHHHHHHHHHHh--CcEEEEeCCCccccccHHHHHHHHhhhhccccccccCC
Confidence            3566889999999888632 21   135677888888773  88999987742   21111223332110 121 0  01


Q ss_pred             cccceecccccCCCCCccccCCHHH-HHHHHHHhCC--CCccceEEEEcCC-------cccHHHHHHHHHhCCCEEEEEe
Q 024306           98 FHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGV--EIMGKNAVVIGRS-------NIVGLPTSLLLQRHHATVSIVH  167 (269)
Q Consensus        98 ~~~~n~g~l~~g~~~~~~~p~t~~g-~~~~l~~~~~--~l~gk~v~ViG~g-------g~vg~~~a~~L~~~ga~Vti~~  167 (269)
                      +-.+|.|       .+.+.||=+.+ ++.+.++.|.  +++|++|+++|.|       ..|.+.++.+++..|++|++++
T Consensus       136 vPVINa~-------~~~~HPtQaLaDl~Ti~e~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~  208 (357)
T TIGR03316       136 PPLVNLQ-------CDIDHPTQAMADIMTLQEKFGGIENLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAH  208 (357)
T ss_pred             CCEEECC-------CCCCCchHHHHHHHHHHHHhCCccccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEEC
Confidence            2334542       23466998887 4555556653  4789999999743       2567888888999999999996


Q ss_pred             CCC-------------------------CCHhhhcCCCCEEEecc
Q 024306          168 ALT-------------------------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       168 ~~t-------------------------~~l~~~~~~aDiVIsAt  187 (269)
                      ...                         .++.+.+++||+|.+-+
T Consensus       209 P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~  253 (357)
T TIGR03316       209 PEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDADIVYPKS  253 (357)
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence            541                         34567789999988663

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.57  E-value=0.0042  Score=59.70  Aligned_cols=74  Identities=27%  Similarity=0.349  Sum_probs=54.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------CHhhh---------------cCCCCEEEec
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPEQI---------------TSEADIVIAA  186 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~l~~~---------------~~~aDiVIsA  186 (269)
                      ++|.|||.|.+ |.++|..|+++|.+|+.++++..               .+.+.               .++||+||.+
T Consensus         4 ~kI~VIGlG~~-G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~   82 (415)
T PRK11064          4 ETISVIGLGYI-GLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA   82 (415)
T ss_pred             cEEEEECcchh-hHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence            68999999886 99999999999999999987632               12111               3379999999


Q ss_pred             cCCC---------Cccc------CCCcCCCcEEEEeeecC
Q 024306          187 AGVA---------NLVR------GSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       187 tg~p---------~~i~------~~~~~~g~vViDv~~~~  211 (269)
                      ++.|         ..+.      ...+++|++||+...-+
T Consensus        83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~  122 (415)
T PRK11064         83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSP  122 (415)
T ss_pred             cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCC
Confidence            9976         1111      12457899998887644

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=96.57  E-value=0.004  Score=56.67  Aligned_cols=69  Identities=22%  Similarity=0.316  Sum_probs=53.6

Q ss_pred             EEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCCc----cc--C---CC
Q 024306          141 VIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----VR--G---SW  197 (269)
Q Consensus       141 ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~~----i~--~---~~  197 (269)
                      +||.|.+ |.+++..|.+.|.+|++++++.              .+..+.++++|+||.+++.+..    +.  .   ..
T Consensus         1 ~IGlG~m-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~   79 (288)
T TIGR01692         1 FIGLGNM-GGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPK   79 (288)
T ss_pred             CCcccHh-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhc
Confidence            5799886 9999999999999999998762              3566778999999999986431    21  1   23


Q ss_pred             cCCCcEEEEeeec
Q 024306          198 LKPGAVVLDVGTC  210 (269)
Q Consensus       198 ~~~g~vViDv~~~  210 (269)
                      ++++.++||+...
T Consensus        80 ~~~g~~vid~st~   92 (288)
T TIGR01692        80 VAKGSLLIDCSTI   92 (288)
T ss_pred             CCCCCEEEECCCC
Confidence            5778999998854

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.54  E-value=0.0051  Score=55.96  Aligned_cols=72  Identities=15%  Similarity=0.210  Sum_probs=51.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------------------------CCHhhhcC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------------KNPEQITS  178 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------------------------~~l~~~~~  178 (269)
                      ++|.|||+|-+ |.++|..|++.|.+|+++++..                                      .++.+.++
T Consensus         2 ~~V~VIG~G~m-G~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~   80 (288)
T PRK09260          2 EKLVVVGAGVM-GRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA   80 (288)
T ss_pred             cEEEEECccHH-HHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence            57999999886 9999999999999999997541                                      23446788


Q ss_pred             CCCEEEeccCCCC-----ccc--CCCcCCCcEE-EEeee
Q 024306          179 EADIVIAAAGVAN-----LVR--GSWLKPGAVV-LDVGT  209 (269)
Q Consensus       179 ~aDiVIsAtg~p~-----~i~--~~~~~~g~vV-iDv~~  209 (269)
                      +||+||.+++...     ++.  .+.+++++++ +|...
T Consensus        81 ~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt  119 (288)
T PRK09260         81 DADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTST  119 (288)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence            9999999998532     111  1235666654 45553

>PRK06199 ornithine cyclodeaminase; Validated

Probab=96.52  E-value=0.006  Score=58.03  Aligned_cols=75  Identities=23%  Similarity=0.321  Sum_probs=57.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHh-C-CC-EEEEEeCCC-----------------------CCHhhhcCCCCEEEeccC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQR-H-HA-TVSIVHALT-----------------------KNPEQITSEADIVIAAAG  188 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~-~-ga-~Vti~~~~t-----------------------~~l~~~~~~aDiVIsAtg  188 (269)
                      .-+++.|||+|.- |+.-+.++.. + .. +|.+.+|+.                       .+.++.+++||||+++|+
T Consensus       154 da~~l~iiG~G~Q-A~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~  232 (379)
T PRK06199        154 DSKVVGLLGPGVM-GKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNS  232 (379)
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccC
Confidence            4578999999987 9988888766 3 23 699987752                       235577899999999997


Q ss_pred             CC-------CcccCCCcCCCcEEEEeeec
Q 024306          189 VA-------NLVRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       189 ~p-------~~i~~~~~~~g~vViDv~~~  210 (269)
                      ..       .++..+|+++|+.|+=+|..
T Consensus       233 s~~~~~s~~Pv~~~~~lkpG~hv~~ig~~  261 (379)
T PRK06199        233 GETGDPSTYPYVKREWVKPGAFLLMPAAC  261 (379)
T ss_pred             CCCCCCCcCcEecHHHcCCCcEEecCCcc
Confidence            42       25899999999988766653

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.52  E-value=0.0056  Score=55.45  Aligned_cols=71  Identities=11%  Similarity=0.234  Sum_probs=52.4

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCC----CEEEEEeCCC----------------CCHhhhcCCCCEEEeccCCCCc---
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHH----ATVSIVHALT----------------KNPEQITSEADIVIAAAGVANL---  192 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~g----a~Vti~~~~t----------------~~l~~~~~~aDiVIsAtg~p~~---  192 (269)
                      ..+|.+||.|.+ |.+++..|.+.|    .+|++++|+.                .+..+.+++||+||.++.....   
T Consensus         3 ~mkI~~IG~G~m-G~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~v   81 (279)
T PRK07679          3 IQNISFLGAGSI-AEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEA   81 (279)
T ss_pred             CCEEEEECccHH-HHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHHH
Confidence            458999999887 999999999887    5788988752                1233556889999999984331   


Q ss_pred             cc--CCCcCCCcEEEEe
Q 024306          193 VR--GSWLKPGAVVLDV  207 (269)
Q Consensus       193 i~--~~~~~~g~vViDv  207 (269)
                      +.  ...++++.+|||+
T Consensus        82 l~~l~~~~~~~~liIs~   98 (279)
T PRK07679         82 LIPFKEYIHNNQLIISL   98 (279)
T ss_pred             HHHHHhhcCCCCEEEEE
Confidence            21  1235678899997

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.49  E-value=0.0068  Score=55.53  Aligned_cols=72  Identities=18%  Similarity=0.253  Sum_probs=54.3

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCC---CCEEEeccCCCC----ccc--
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSE---ADIVIAAAGVAN----LVR--  194 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~---aDiVIsAtg~p~----~i~--  194 (269)
                      +|.+||.|.+ |.+++..|.+.|.+|++++++.              .+..+.+++   +|+||.+++.+.    .+.  
T Consensus         2 ~Ig~IGlG~m-G~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i   80 (299)
T PRK12490          2 KLGLIGLGKM-GGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDL   80 (299)
T ss_pred             EEEEEcccHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHH
Confidence            5899999987 9999999999999999998762              244455544   699999998652    121  


Q ss_pred             CCCcCCCcEEEEeeec
Q 024306          195 GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       195 ~~~~~~g~vViDv~~~  210 (269)
                      ...+++|.++||++..
T Consensus        81 ~~~l~~g~ivid~st~   96 (299)
T PRK12490         81 YPLLSPGDIVVDGGNS   96 (299)
T ss_pred             hccCCCCCEEEECCCC
Confidence            1235789999999644

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=96.48  E-value=0.0097  Score=54.51  Aligned_cols=72  Identities=17%  Similarity=0.252  Sum_probs=54.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEeccCCCC----cc-cCC---
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVAN----LV-RGS---  196 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIsAtg~p~----~i-~~~---  196 (269)
                      +|.+||.|.+ |.+++..|.+.|.+|++++++.             .+..+..+++|+||.+++.+.    .+ ..+   
T Consensus         2 ~Ig~IGlG~M-G~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~   80 (292)
T PRK15059          2 KLGFIGLGIM-GTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT   80 (292)
T ss_pred             eEEEEccCHH-HHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence            5899999987 9999999999999999987652             234456789999999998532    12 211   


Q ss_pred             -CcCCCcEEEEeeec
Q 024306          197 -WLKPGAVVLDVGTC  210 (269)
Q Consensus       197 -~~~~g~vViDv~~~  210 (269)
                       .+++|.++||++..
T Consensus        81 ~~~~~g~ivvd~sT~   95 (292)
T PRK15059         81 KASLKGKTIVDMSSI   95 (292)
T ss_pred             ccCCCCCEEEECCCC
Confidence             25678999998854

>PRK06398 aldose dehydrogenase; Validated

Probab=96.46  E-value=0.0071  Score=53.60  Aligned_cols=37  Identities=22%  Similarity=0.170  Sum_probs=33.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+.++..|.++|++|+++.|+
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~   39 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIK   39 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            4789999999999888999999999999999887664

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.46  E-value=0.0049  Score=57.05  Aligned_cols=72  Identities=17%  Similarity=0.175  Sum_probs=54.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHhhhcCCCCEEEeccC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITSEADIVIAAAG  188 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------~~l~~~~~~aDiVIsAtg  188 (269)
                      .+|.|||+|.+ |.+++..|++.|.+|++.+|+.                            .++.+.++++|+||.+++
T Consensus         5 m~I~iIG~G~m-G~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          5 MRVAVLGAGAW-GTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CeEEEECcCHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            47999999886 9999999999999999997742                            134456788999999998


Q ss_pred             CCCccc-CCCcCCCcEEEEeee
Q 024306          189 VANLVR-GSWLKPGAVVLDVGT  209 (269)
Q Consensus       189 ~p~~i~-~~~~~~g~vViDv~~  209 (269)
                      ....-. -+.++++.+++++..
T Consensus        84 ~~~~~~v~~~l~~~~~vi~~~~  105 (328)
T PRK14618         84 SKALRETLAGLPRALGYVSCAK  105 (328)
T ss_pred             hHHHHHHHHhcCcCCEEEEEee
Confidence            653210 133677888999864

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.42  E-value=0.0059  Score=55.42  Aligned_cols=72  Identities=17%  Similarity=0.230  Sum_probs=51.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC----EEEEEeCCC---------------CCHhhhcCCCCEEEeccCCCCc---cc
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA----TVSIVHALT---------------KNPEQITSEADIVIAAAGVANL---VR  194 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga----~Vti~~~~t---------------~~l~~~~~~aDiVIsAtg~p~~---i~  194 (269)
                      +++.+||.|.+ |.+++..|.+.|.    +|++++++.               .+..+.+++||+||-++.-..+   +.
T Consensus         3 ~~IgfIG~G~M-G~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~   81 (272)
T PRK12491          3 KQIGFIGCGNM-GIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVIN   81 (272)
T ss_pred             CeEEEECccHH-HHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHHHH
Confidence            47999999987 9999999998873    588887652               1233456789999999983221   11


Q ss_pred             --CCCcCCCcEEEEeee
Q 024306          195 --GSWLKPGAVVLDVGT  209 (269)
Q Consensus       195 --~~~~~~g~vViDv~~  209 (269)
                        ...++++.+|||+.-
T Consensus        82 ~l~~~~~~~~lvISi~A   98 (272)
T PRK12491         82 QIKDQIKNDVIVVTIAA   98 (272)
T ss_pred             HHHHhhcCCcEEEEeCC
Confidence              123567788888864

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=96.42  E-value=0.068  Score=50.15  Aligned_cols=143  Identities=15%  Similarity=0.052  Sum_probs=92.2

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceec
Q 024306           28 NKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG  104 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~---~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g  104 (269)
                      +-..++.++|..+.++.=+.++   ..|.+.+.++-|+.-  +|+|.+-.|-..  ...++.+..       .+-.+|.|
T Consensus        61 SFe~A~~~LGg~~i~~~~~~~s~~~kgEsl~Dtarvls~y--~D~IviR~~~~~--~~~~~a~~~-------~vPVINa~  129 (338)
T PRK08192         61 SFGCAFNLLGGHVRETTGMASSSLSKGESLYDTARVLSTY--SDVIAMRHPDAG--SVKEFAEGS-------RVPVINGG  129 (338)
T ss_pred             HHHHHHHHcCCcEEeecCcccccCCCCCCHHHHHHHHHHc--CCEEEEeCCchh--HHHHHHHhC-------CCCEEECC
Confidence            3567899999998864211111   235677777777773  889999877432  223332221       13344542


Q ss_pred             ccccCCCCCccccCCHHH-HHHHHHHh---CCCCccceEEEEcCC--cccHHHHHHHHHhC-CCEEEEEeCC--------
Q 024306          105 NLAMRGREPLFIPCTPKG-CIELLIRS---GVEIMGKNAVVIGRS--NIVGLPTSLLLQRH-HATVSIVHAL--------  169 (269)
Q Consensus       105 ~l~~g~~~~~~~p~t~~g-~~~~l~~~---~~~l~gk~v~ViG~g--g~vg~~~a~~L~~~-ga~Vti~~~~--------  169 (269)
                      .      -+.+.||=+.+ ++.+.++.   +.+++|++|+++|-+  +-+.+.++..|... |++|++++..        
T Consensus       130 ~------g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~  203 (338)
T PRK08192        130 D------GSNEHPTQALLDLFTIQKELAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYV  203 (338)
T ss_pred             C------CCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHH
Confidence            1      12456998887 44444443   347999999999996  44578888776644 8899988643        


Q ss_pred             -------------CCCHhhhcCCCCEEEecc
Q 024306          170 -------------TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       170 -------------t~~l~~~~~~aDiVIsAt  187 (269)
                                   +.++.+.+++||+|++..
T Consensus       204 ~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~  234 (338)
T PRK08192        204 ISDIENAGHKITITDQLEGNLDKADILYLTR  234 (338)
T ss_pred             HHHHHHcCCeEEEEcCHHHHHccCCEEEEcC
Confidence                         145678999999999853

>PRK08223 hypothetical protein; Validated

Probab=96.38  E-value=0.007  Score=55.43  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=30.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEe
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH  167 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~  167 (269)
                      .++.++|+|+|+||. |-+++..|+..|. ++++++
T Consensus        24 kL~~s~VlIvG~GGL-Gs~va~~LA~aGVG~i~lvD   58 (287)
T PRK08223         24 RLRNSRVAIAGLGGV-GGIHLLTLARLGIGKFTIAD   58 (287)
T ss_pred             HHhcCCEEEECCCHH-HHHHHHHHHHhCCCeEEEEe
Confidence            367899999999997 9999999999996 688884

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.38  E-value=0.0062  Score=52.83  Aligned_cols=35  Identities=14%  Similarity=0.246  Sum_probs=31.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  168 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  168 (269)
                      .++.++|+|+|+|+. |..++..|++.|. ++++++.
T Consensus        18 ~L~~~~V~IvG~Ggl-Gs~ia~~La~~Gvg~i~lvD~   53 (200)
T TIGR02354        18 KLEQATVAICGLGGL-GSNVAINLARAGIGKLILVDF   53 (200)
T ss_pred             HHhCCcEEEECcCHH-HHHHHHHHHHcCCCEEEEECC
Confidence            467899999999997 9999999999998 6999854

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.36  E-value=0.0055  Score=53.72  Aligned_cols=38  Identities=26%  Similarity=0.329  Sum_probs=34.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+.+++.|.++|++|+++.|+
T Consensus         5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~   42 (258)
T PRK06949          5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRR   42 (258)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999998888999999999999999988765

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.35  E-value=0.0091  Score=52.53  Aligned_cols=38  Identities=29%  Similarity=0.317  Sum_probs=34.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+.+++.|+++|++|.++.|.
T Consensus         5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~   42 (260)
T PRK06523          5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARS   42 (260)
T ss_pred             cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999998888999999999999999888764

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.35  E-value=0.0056  Score=49.43  Aligned_cols=72  Identities=24%  Similarity=0.280  Sum_probs=46.3

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------CCHhhhcCCCCEEEeccCCCC-------c
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------KNPEQITSEADIVIAAAGVAN-------L  192 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------~~l~~~~~~aDiVIsAtg~p~-------~  192 (269)
                      --+|.|||+|.+ |..++..|.+.|..|.-+.+++                .++.+.+++||++|-+++-..       +
T Consensus        10 ~l~I~iIGaGrV-G~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va~~L   88 (127)
T PF10727_consen   10 RLKIGIIGAGRV-GTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVAEQL   88 (127)
T ss_dssp             --EEEEECTSCC-CCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHHHHH
T ss_pred             ccEEEEECCCHH-HHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHHHHH
Confidence            357999999996 9999999999999987775442                234577899999999998421       2


Q ss_pred             ccCCCcCCCcEEEEee
Q 024306          193 VRGSWLKPGAVVLDVG  208 (269)
Q Consensus       193 i~~~~~~~g~vViDv~  208 (269)
                      -....+++|.+|+=+.
T Consensus        89 a~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   89 AQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             HCC--S-TT-EEEES-
T ss_pred             HHhccCCCCcEEEECC
Confidence            1222467888887654

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=96.34  E-value=0.0088  Score=55.51  Aligned_cols=55  Identities=20%  Similarity=0.249  Sum_probs=44.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      ++||+|.|||.|.+ |.+++..|.+.|.+|++..+..              .+..+.+++||+|+.+++-
T Consensus         1 l~~kkIgiIG~G~m-G~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp   69 (314)
T TIGR00465         1 LKGKTVAIIGYGSQ-GHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPD   69 (314)
T ss_pred             CCcCEEEEEeEcHH-HHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCc
Confidence            57999999999997 9999999999998877654331              1245667899999999984

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.32  E-value=0.0088  Score=57.49  Aligned_cols=35  Identities=23%  Similarity=0.362  Sum_probs=32.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++||+++|+|.|++ |+++|+.|+++|++|+++.+.
T Consensus         3 ~~~k~v~v~G~g~~-G~s~a~~l~~~G~~V~~~d~~   37 (447)
T PRK02472          3 YQNKKVLVLGLAKS-GYAAAKLLHKLGANVTVNDGK   37 (447)
T ss_pred             cCCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEEcCC
Confidence            57999999999995 999999999999999999764

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=96.32  E-value=0.019  Score=52.75  Aligned_cols=141  Identities=16%  Similarity=0.175  Sum_probs=92.8

Q ss_pred             HHHHHHHcCCeEEEEEcCCC-C-CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceeccc
Q 024306           29 KIKACEEVGIKSIVTEFADG-C-TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNL  106 (269)
Q Consensus        29 ~~~~~~~~Gi~~~~~~~~~~-~-~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~l  106 (269)
                      -.-++..+|..+.|+.=... . ..|.+.+.-+=|..-  +|||.+--.  .|-+..++.+    .   .++-      +
T Consensus        62 Feva~~qlGg~~~~l~~~~~Qlgr~Esi~DTArVLsr~--~D~I~~R~~--~~~~ve~lA~----~---s~VP------V  124 (310)
T COG0078          62 FEVAATQLGGHAIYLGPGDSQLGRGESIKDTARVLSRM--VDAIMIRGF--SHETLEELAK----Y---SGVP------V  124 (310)
T ss_pred             HHHHHHHcCCCeEEeCCCccccCCCCcHHHHHHHHHhh--hheEEEecc--cHHHHHHHHH----h---CCCc------e
Confidence            44577788888877653210 0 123344444444442  778877554  2221122211    1   1111      2


Q ss_pred             ccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC-----------------
Q 024306          107 AMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-----------------  169 (269)
Q Consensus       107 ~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-----------------  169 (269)
                      ++| -++.+.||-..|=+--++++...++|++++-+|-|+.|+..+....+..|.+|+++...                 
T Consensus       125 iNg-LtD~~HP~Q~LADl~Ti~E~~g~l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~  203 (310)
T COG0078         125 ING-LTDEFHPCQALADLMTIKEHFGSLKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAK  203 (310)
T ss_pred             Ecc-cccccCcHHHHHHHHHHHHhcCcccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence            223 36778899999965555555555999999999999999999999999999999999643                 


Q ss_pred             --------CCCHhhhcCCCCEEEecc
Q 024306          170 --------TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       170 --------t~~l~~~~~~aDiVIsAt  187 (269)
                              +.+..+++++||+|.+-+
T Consensus       204 ~~g~~i~~t~d~~eAv~gADvvyTDv  229 (310)
T COG0078         204 ESGGKITLTEDPEEAVKGADVVYTDV  229 (310)
T ss_pred             hcCCeEEEecCHHHHhCCCCEEEecC
Confidence                    347788999999999665

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.31  E-value=0.0065  Score=52.66  Aligned_cols=35  Identities=26%  Similarity=0.543  Sum_probs=31.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  168 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  168 (269)
                      .+++++|+|+|.||. |..+++.|+..|. ++++++.
T Consensus        18 kl~~~~VlviG~Ggl-Gs~ia~~La~~Gv~~i~lvD~   53 (202)
T TIGR02356        18 RLLNSHVLIIGAGGL-GSPAALYLAGAGVGTIVIVDD   53 (202)
T ss_pred             HhcCCCEEEECCCHH-HHHHHHHHHHcCCCeEEEecC
Confidence            468899999999997 9999999999997 7998854

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.30  E-value=0.0096  Score=54.14  Aligned_cols=52  Identities=25%  Similarity=0.289  Sum_probs=43.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------------------------CCHhhhc
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------------------KNPEQIT  177 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------------------------~~l~~~~  177 (269)
                      ++|.|||+|-+ |.++|..|+..|.+|+++.+..                                       .++.+.+
T Consensus         4 ~kIaViGaG~m-G~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~   82 (287)
T PRK08293          4 KNVTVAGAGVL-GSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV   82 (287)
T ss_pred             cEEEEECCCHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence            57999999886 9999999999999999996531                                       2345568


Q ss_pred             CCCCEEEeccCC
Q 024306          178 SEADIVIAAAGV  189 (269)
Q Consensus       178 ~~aDiVIsAtg~  189 (269)
                      ++||+||.|++.
T Consensus        83 ~~aDlVieavpe   94 (287)
T PRK08293         83 KDADLVIEAVPE   94 (287)
T ss_pred             cCCCEEEEeccC
Confidence            899999999984

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=96.29  E-value=0.0096  Score=58.95  Aligned_cols=93  Identities=15%  Similarity=0.228  Sum_probs=73.8

Q ss_pred             CCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh----CCC-------EEEEEeCC-----------------
Q 024306          118 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----HHA-------TVSIVHAL-----------------  169 (269)
Q Consensus       118 ~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~----~ga-------~Vti~~~~-----------------  169 (269)
                      ++-.|++..++-.+.++++.++++.|+|.+ |..+|.+|..    +|.       .+++++++                 
T Consensus       279 V~lAgll~Alr~~g~~l~d~riv~~GAGsA-giGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~  357 (559)
T PTZ00317        279 VIAAGFLNALKLSGVPPEEQRIVFFGAGSA-AIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVP  357 (559)
T ss_pred             HHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHH
Confidence            456788999999999999999999999998 9999998873    676       58888543                 


Q ss_pred             ------------CCCHhhhcCCC--CEEEeccCCCCcccCCCcC------CCcEEEEeeecCC
Q 024306          170 ------------TKNPEQITSEA--DIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  212 (269)
Q Consensus       170 ------------t~~l~~~~~~a--DiVIsAtg~p~~i~~~~~~------~g~vViDv~~~~~  212 (269)
                                  ..+|.+.++.+  |++|-+.+.|+.|++++++      +.-+|+=++ ||.
T Consensus       358 fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~rPIIFaLS-NPt  419 (559)
T PTZ00317        358 FARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLS-NPT  419 (559)
T ss_pred             HhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                        01467778888  9999988888888888875      355777666 554

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.25  E-value=0.0067  Score=54.12  Aligned_cols=34  Identities=12%  Similarity=0.343  Sum_probs=30.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEe
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH  167 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~  167 (269)
                      .+++++|+|+|.||. |..++..|+..|. ++++++
T Consensus        21 ~L~~~~VlvvG~Ggl-Gs~va~~La~~Gvg~i~lvD   55 (240)
T TIGR02355        21 ALKASRVLIVGLGGL-GCAASQYLAAAGVGNLTLLD   55 (240)
T ss_pred             HHhCCcEEEECcCHH-HHHHHHHHHHcCCCEEEEEe
Confidence            367899999999997 9999999999996 688884

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.23  E-value=0.0098  Score=52.81  Aligned_cols=57  Identities=18%  Similarity=0.229  Sum_probs=44.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-C---------------------CHhhhcCCCCEEEeccCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-K---------------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~---------------------~l~~~~~~aDiVIsAtg~  189 (269)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.|.. .                     ++.+.+.+.|++|+..|.
T Consensus        11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG~   89 (245)
T PRK12367         11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHGI   89 (245)
T ss_pred             hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCcc
Confidence            46899999999988889999999999999988876543 1                     112344567888877774

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.21  E-value=0.012  Score=53.83  Aligned_cols=72  Identities=19%  Similarity=0.270  Sum_probs=53.3

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCC---CCEEEeccCCCCc----cc--
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSE---ADIVIAAAGVANL----VR--  194 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~---aDiVIsAtg~p~~----i~--  194 (269)
                      +|.+||.|.+ |.+++..|.+.|.+|++++++.              .+..+.++.   +|+||.+++....    +.  
T Consensus         2 ~Ig~IGlG~M-G~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l   80 (301)
T PRK09599          2 QLGMIGLGRM-GGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDEL   80 (301)
T ss_pred             EEEEEcccHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHH
Confidence            6899999887 9999999999999999998863              133444443   6999999886421    11  


Q ss_pred             CCCcCCCcEEEEeeec
Q 024306          195 GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       195 ~~~~~~g~vViDv~~~  210 (269)
                      ...++++.++||++..
T Consensus        81 ~~~l~~g~ivid~st~   96 (301)
T PRK09599         81 APLLSPGDIVIDGGNS   96 (301)
T ss_pred             HhhCCCCCEEEeCCCC
Confidence            1346778899998643

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.21  E-value=0.011  Score=51.00  Aligned_cols=57  Identities=26%  Similarity=0.353  Sum_probs=44.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------CH----h---hhcCCCCEEEeccCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NP----E---QITSEADIVIAAAGV  189 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------~l----~---~~~~~aDiVIsAtg~  189 (269)
                      +++||+++|.|+++.+|+.++..|+++|++|+++.+...            |+    .   +.....|++|+..|.
T Consensus         2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ag~   77 (235)
T PRK06550          2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDLSGNFHFLQLDLSDDLEPLFDWVPSVDILCNTAGI   77 (235)
T ss_pred             CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccccCCcEEEEECChHHHHHHHHHhhCCCCEEEECCCC
Confidence            368999999999888999999999999999988876521            11    1   123457999987773

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=96.19  E-value=0.0093  Score=54.66  Aligned_cols=72  Identities=18%  Similarity=0.159  Sum_probs=53.6

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------CH---hhhcCCCCEEEeccCCCC---ccc--C
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------NP---EQITSEADIVIAAAGVAN---LVR--G  195 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------~l---~~~~~~aDiVIsAtg~p~---~i~--~  195 (269)
                      +|.|||.|.+ |.+++..|.+.|.+|++.+|+..              ++   .+.+.++|+||.+++...   .+.  .
T Consensus         2 ~Ig~IGlG~m-G~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~   80 (298)
T TIGR00872         2 QLGLIGLGRM-GANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELA   80 (298)
T ss_pred             EEEEEcchHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHH
Confidence            6899999887 99999999999999999987631              22   234567899999988542   111  1


Q ss_pred             CCcCCCcEEEEeeec
Q 024306          196 SWLKPGAVVLDVGTC  210 (269)
Q Consensus       196 ~~~~~g~vViDv~~~  210 (269)
                      ..+++|.+|||++..
T Consensus        81 ~~l~~g~ivid~st~   95 (298)
T TIGR00872        81 PTLEKGDIVIDGGNS   95 (298)
T ss_pred             hhCCCCCEEEECCCC
Confidence            246788999998754

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=96.16  E-value=0.015  Score=51.45  Aligned_cols=52  Identities=19%  Similarity=0.297  Sum_probs=43.1

Q ss_pred             ccCCHHHHHHHHH----HhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE-EEeC
Q 024306          116 IPCTPKGCIELLI----RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHA  168 (269)
Q Consensus       116 ~p~t~~g~~~~l~----~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt-i~~~  168 (269)
                      .|.|++|+...++    +.+.+++|++|+|.|.|.+ |+.+++.|.++|++|+ ++.+
T Consensus         7 ~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~V-G~~~a~~L~~~g~~vv~v~D~   63 (227)
T cd01076           7 EEATGRGVAYATREALKKLGIGLAGARVAIQGFGNV-GSHAARFLHEAGAKVVAVSDS   63 (227)
T ss_pred             CccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEECC
Confidence            4678888766654    4567899999999999885 9999999999999976 7765

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.16  E-value=0.013  Score=52.86  Aligned_cols=69  Identities=19%  Similarity=0.276  Sum_probs=51.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC---------------CCHhhhcCCCCEEEeccCCCC---c---cc
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT---------------KNPEQITSEADIVIAAAGVAN---L---VR  194 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t---------------~~l~~~~~~aDiVIsAtg~p~---~---i~  194 (269)
                      +|.|||.|.+ |.+++..|.+.|.  +|++++++.               .+..+. .++|+||.+++...   .   +.
T Consensus         2 ~I~iIG~G~m-G~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~aD~Vilavp~~~~~~~~~~l~   79 (275)
T PRK08507          2 KIGIIGLGLM-GGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEEL-KKCDVIFLAIPVDAIIEILPKLL   79 (275)
T ss_pred             EEEEEccCHH-HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHH-hcCCEEEEeCcHHHHHHHHHHHh
Confidence            6899999886 9999999999885  688777642               123343 45999999998532   2   22


Q ss_pred             CCCcCCCcEEEEeeec
Q 024306          195 GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       195 ~~~~~~g~vViDv~~~  210 (269)
                      +  ++++++|+|++..
T Consensus        80 ~--l~~~~iv~d~gs~   93 (275)
T PRK08507         80 D--IKENTTIIDLGST   93 (275)
T ss_pred             c--cCCCCEEEECccc
Confidence            2  6789999998864

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.15  E-value=0.015  Score=55.63  Aligned_cols=72  Identities=28%  Similarity=0.330  Sum_probs=53.3

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------------------------------CHhhhcCCCCEE
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------------------------NPEQITSEADIV  183 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------------------------~l~~~~~~aDiV  183 (269)
                      +|.|||.|.+ |.++|..|++.|.+|++++++..                                  +..+.++++|+|
T Consensus         2 kI~vIGlG~~-G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         2 KIAVIGLGYV-GLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             EEEEECCCch-hHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            6899999886 99999999999999999976421                                  223457889999


Q ss_pred             EeccCCCCc---------cc------CCCcCCCcEEEEeeec
Q 024306          184 IAAAGVANL---------VR------GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       184 IsAtg~p~~---------i~------~~~~~~g~vViDv~~~  210 (269)
                      |.+++.|.-         +.      ...++++++|+|...-
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv  122 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTV  122 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcC
Confidence            999986521         10      1134678888887743

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.15  E-value=0.015  Score=51.12  Aligned_cols=48  Identities=15%  Similarity=0.157  Sum_probs=38.9

Q ss_pred             HHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCC
Q 024306          121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL  169 (269)
Q Consensus       121 ~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~  169 (269)
                      .++.+.+++.+.+++|++|+|.|.|.+ |+.+++.|.++|+. |.+++++
T Consensus         8 ~~~~~~~~~~~~~l~g~~vaIqGfGnV-G~~~a~~L~~~G~~vV~vsD~~   56 (217)
T cd05211           8 VAMKAAMKHLGDSLEGLTVAVQGLGNV-GWGLAKKLAEEGGKVLAVSDPD   56 (217)
T ss_pred             HHHHHHHHHcCCCcCCCEEEEECCCHH-HHHHHHHHHHcCCEEEEEEcCC
Confidence            334555667778999999999999885 99999999999985 6677654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.15  E-value=0.023  Score=49.07  Aligned_cols=36  Identities=14%  Similarity=0.215  Sum_probs=31.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  169 (269)
                      .++.++|+|+|.|+. |..+++.|+..|. ++++++..
T Consensus        18 ~L~~s~VlIiG~ggl-G~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          18 RLRSARILLIGLKGL-GAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HHHhCcEEEEcCCHH-HHHHHHHHHHcCCCEEEEEECC
Confidence            367899999999995 9999999999997 69999543

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.15  E-value=0.0048  Score=54.37  Aligned_cols=34  Identities=18%  Similarity=0.412  Sum_probs=30.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEe
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH  167 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~  167 (269)
                      .++.++|+|+|.||. |..+++.|+..|. ++++++
T Consensus        18 ~L~~~~VlivG~Ggl-Gs~va~~La~~Gvg~i~lvD   52 (228)
T cd00757          18 KLKNARVLVVGAGGL-GSPAAEYLAAAGVGKLGLVD   52 (228)
T ss_pred             HHhCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEc
Confidence            467899999999997 9999999999997 688883

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.13  E-value=0.0089  Score=56.01  Aligned_cols=35  Identities=20%  Similarity=0.372  Sum_probs=30.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  168 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  168 (269)
                      .+++++|+|||.|+. |.+++..|+..|. +++++++
T Consensus        21 ~L~~~~VlIiG~Ggl-Gs~va~~La~aGvg~i~lvD~   56 (338)
T PRK12475         21 KIREKHVLIVGAGAL-GAANAEALVRAGIGKLTIADR   56 (338)
T ss_pred             hhcCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEcC
Confidence            468899999999996 9999999999997 7888854

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.13  E-value=0.0048  Score=65.44  Aligned_cols=115  Identities=15%  Similarity=0.186  Sum_probs=76.4

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC-CE-------------EEEEeCCC-----------------------CCHhhhc
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHH-AT-------------VSIVHALT-----------------------KNPEQIT  177 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~g-a~-------------Vti~~~~t-----------------------~~l~~~~  177 (269)
                      +.|+|+|||+|.+ |++.+..|++.. ++             |+++.+..                       .++.+.+
T Consensus       568 ~~~rIlVLGAG~V-G~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v  646 (1042)
T PLN02819        568 KSQNVLILGAGRV-CRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYV  646 (1042)
T ss_pred             cCCcEEEECCCHH-HHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhh
Confidence            5789999999886 999999998653 33             88886431                       1234455


Q ss_pred             CCCCEEEeccCC-CCc-ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHH
Q 024306          178 SEADIVIAAAGV-ANL-VRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL  255 (269)
Q Consensus       178 ~~aDiVIsAtg~-p~~-i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl  255 (269)
                      +++|+||++++. -|. +-...++.|.-++|..|...+.      ..+.      +.+++++...=+-=|+-|--..|+.
T Consensus       647 ~~~DaVIsalP~~~H~~VAkaAieaGkHvv~eky~~~e~------~~L~------e~Ak~AGV~~m~e~GlDPGid~~lA  714 (1042)
T PLN02819        647 SQVDVVISLLPASCHAVVAKACIELKKHLVTASYVSEEM------SALD------SKAKEAGITILCEMGLDPGIDHMMA  714 (1042)
T ss_pred             cCCCEEEECCCchhhHHHHHHHHHcCCCEEECcCCHHHH------HHHH------HHHHHcCCEEEECCccCHHHHHHHH
Confidence            789999999995 233 5556677788888887543222      0122      3455555422222346687888998


Q ss_pred             HHHHHHH
Q 024306          256 SNTLDSA  262 (269)
Q Consensus       256 ~n~v~a~  262 (269)
                      .+++..+
T Consensus       715 ~~~Id~~  721 (1042)
T PLN02819        715 MKMIDDA  721 (1042)
T ss_pred             HHHHHhh
Confidence            8888776

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=96.12  E-value=0.021  Score=53.46  Aligned_cols=92  Identities=14%  Similarity=0.175  Sum_probs=59.3

Q ss_pred             CCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC---------------------Hhhh
Q 024306          118 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------------PEQI  176 (269)
Q Consensus       118 ~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---------------------l~~~  176 (269)
                      |....+...+......-.|++|+|.|+|+ +|..+++.+..+|++|+++......                     +.+.
T Consensus       166 ~~~~ta~~al~~~~~~~~g~~VlV~G~G~-vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~  244 (360)
T PLN02586        166 CAGITVYSPMKYYGMTEPGKHLGVAGLGG-LGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAA  244 (360)
T ss_pred             cchHHHHHHHHHhcccCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhh
Confidence            33333444454444434799999999976 5999999999999987665432211                     1122


Q ss_pred             cCCCCEEEeccCCCCcc--cCCCcCCCcEEEEeeec
Q 024306          177 TSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       177 ~~~aDiVIsAtg~p~~i--~~~~~~~g~vViDv~~~  210 (269)
                      ...+|+||.++|.+..+  .-+.++++-.++.++..
T Consensus       245 ~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~  280 (360)
T PLN02586        245 IGTMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLP  280 (360)
T ss_pred             cCCCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCC
Confidence            23479999999865432  23357788778888754

>PLN02688 pyrroline-5-carboxylate reductase

Probab=96.12  E-value=0.013  Score=52.38  Aligned_cols=68  Identities=13%  Similarity=0.212  Sum_probs=48.2

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC----EEEEE-eCCC--------------CCHhhhcCCCCEEEeccCCCCc----cc
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHA----TVSIV-HALT--------------KNPEQITSEADIVIAAAGVANL----VR  194 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga----~Vti~-~~~t--------------~~l~~~~~~aDiVIsAtg~p~~----i~  194 (269)
                      +|.+||.|.+ |.+++..|.+.|.    +|+++ +|+.              .+..+.++++|+||.++. |..    +.
T Consensus         2 kI~~IG~G~m-G~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~   79 (266)
T PLN02688          2 RVGFIGAGKM-AEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT   79 (266)
T ss_pred             eEEEECCcHH-HHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence            5899999887 9999999999887    78888 6642              234456788999999995 331    11


Q ss_pred             --CCCcCCCcEEEEe
Q 024306          195 --GSWLKPGAVVLDV  207 (269)
Q Consensus       195 --~~~~~~g~vViDv  207 (269)
                        ...++++.+||.+
T Consensus        80 ~l~~~~~~~~~iIs~   94 (266)
T PLN02688         80 ELRPLLSKDKLLVSV   94 (266)
T ss_pred             HHHhhcCCCCEEEEe
Confidence              1234566666655

>PRK09072 short chain dehydrogenase; Provisional

Probab=96.11  E-value=0.0084  Score=52.98  Aligned_cols=37  Identities=19%  Similarity=0.211  Sum_probs=33.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++++++|.|+++.+|+.++..|+++|++|+++.|.
T Consensus         2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~   38 (263)
T PRK09072          2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRN   38 (263)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence            3678999999998888999999999999999998765

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.11  E-value=0.013  Score=53.61  Aligned_cols=70  Identities=17%  Similarity=0.302  Sum_probs=52.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHhhhcCCCCEEEeccCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      +|.|||.|.+ |.+++..|++.|.+|+++++..                            .+..+.++++|+||.+++.
T Consensus         3 kI~iiG~G~m-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          3 KIAVLGAGSW-GTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             EEEEECCCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            6999999886 9999999999999999997641                            1233456789999999985


Q ss_pred             CC---ccc--CCCcCCCcEEEEee
Q 024306          190 AN---LVR--GSWLKPGAVVLDVG  208 (269)
Q Consensus       190 p~---~i~--~~~~~~g~vViDv~  208 (269)
                      ..   .+.  ...++++++++++.
T Consensus        82 ~~~~~v~~~l~~~~~~~~~vi~~~  105 (325)
T PRK00094         82 QALREVLKQLKPLLPPDAPIVWAT  105 (325)
T ss_pred             HHHHHHHHHHHhhcCCCCEEEEEe
Confidence            32   111  12457788999984

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=96.08  E-value=0.14  Score=49.06  Aligned_cols=151  Identities=16%  Similarity=0.118  Sum_probs=96.3

Q ss_pred             HHHHHHHHcCCeEEEEEcCCC--CCHHHHHHHHHhhhcCCCcCEEEEeCCC---CCCCCHHHHHhcCCcc--ccc-cccc
Q 024306           28 NKIKACEEVGIKSIVTEFADG--CTEDEVLNALSNYNQDSSINGILVQLPL---PQHLDEGKILDAVSLE--KDV-DGFH   99 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~--~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl---~~~~~~~~i~~~i~p~--kdv-dg~~   99 (269)
                      +-..++.++|.++.++.-...  ..-|-+.+.++-|+.-  +|+|.+-.|.   ..+-...++.+...-.  ++| -..-
T Consensus        76 SFE~A~~~LGg~~i~l~~~~ss~~kGEsl~DTarvLs~y--~D~IviR~~~~~g~~~~~~~ela~~~~~~~~~~~~~~~p  153 (395)
T PRK07200         76 SYASACNLLGLEVQDLDEGKSQIAHGETVRETANMISFM--ADVIGIRDDMYIGKGNAYMREVGAAVDDGYKQGVLPQRP  153 (395)
T ss_pred             HHHHHHHHcCCCEEEcCCccccCCCCCCHHHHHHHHHHh--CCEEEEecCcccccccHHHHHHHHHhhhhcccccccCCC
Confidence            456789999999988753221  0135677788878773  8899999875   2222112222221100  011 0111


Q ss_pred             -cceecccccCCCCCccccCCHHH-HHHHHHHhCC--CCccceEEEEcC-------CcccHHHHHHHHHhCCCEEEEEeC
Q 024306          100 -PLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGV--EIMGKNAVVIGR-------SNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       100 -~~n~g~l~~g~~~~~~~p~t~~g-~~~~l~~~~~--~l~gk~v~ViG~-------gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                       .+|.+       .+...||=+.+ ++.+.++.|-  .++|++|+++|.       +..|.+.++.++...|++|++++.
T Consensus       154 PVINa~-------~~~~HPtQaLaDl~TI~E~~G~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P  226 (395)
T PRK07200        154 TLVNLQ-------CDIDHPTQSMADLLHLIEHFGGLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHP  226 (395)
T ss_pred             eEEECC-------CCCCCcHHHHHHHHHHHHHhCCCcccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECC
Confidence             24541       23466887777 5556566654  389999999964       446689999999999999999864


Q ss_pred             C-------------------------CCCHhhhcCCCCEEEecc
Q 024306          169 L-------------------------TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       169 ~-------------------------t~~l~~~~~~aDiVIsAt  187 (269)
                      .                         +.++.+.+++||+|.+-+
T Consensus       227 ~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~aDvVYtd~  270 (395)
T PRK07200        227 EGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDADIVYPKS  270 (395)
T ss_pred             CccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence            3                         135678899999999753

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.04  E-value=0.01  Score=53.06  Aligned_cols=34  Identities=21%  Similarity=0.388  Sum_probs=30.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEe
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH  167 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~  167 (269)
                      .++.++|+|+|.||. |..++..|+..|. ++++++
T Consensus        29 ~L~~~~VliiG~Ggl-Gs~va~~La~~Gvg~i~lvD   63 (245)
T PRK05690         29 KLKAARVLVVGLGGL-GCAASQYLAAAGVGTLTLVD   63 (245)
T ss_pred             HhcCCeEEEECCCHH-HHHHHHHHHHcCCCEEEEEc
Confidence            468899999999996 9999999999996 688884

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=96.02  E-value=0.019  Score=51.81  Aligned_cols=54  Identities=17%  Similarity=0.174  Sum_probs=44.1

Q ss_pred             ccccCCHHHHHHHH----HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE-EEeC
Q 024306          114 LFIPCTPKGCIELL----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHA  168 (269)
Q Consensus       114 ~~~p~t~~g~~~~l----~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt-i~~~  168 (269)
                      +--+.|++|+...+    ++.+.+++|++|+|-|.|.+ |+.+++.|.++|++|+ |+++
T Consensus        12 gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnV-G~~~a~~L~e~GakvvaVsD~   70 (254)
T cd05313          12 IRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNV-AQYAAEKLLELGAKVVTLSDS   70 (254)
T ss_pred             CCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEECC
Confidence            33477888876555    45678999999999999885 9999999999999866 7764

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.02  E-value=0.0089  Score=51.40  Aligned_cols=38  Identities=21%  Similarity=0.251  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .++||+++|.|+++.+|+.+++.|+++|++|.++.|+.
T Consensus         4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~   41 (239)
T PRK12828          4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGA   41 (239)
T ss_pred             CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCCh
Confidence            36799999999999999999999999999999988753

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.00  E-value=0.013  Score=57.09  Aligned_cols=38  Identities=13%  Similarity=0.141  Sum_probs=33.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      ..+.+|+|+|+|.|++ |+++++.|.++|++|+++++..
T Consensus        11 ~~~~~~~v~v~G~G~s-G~a~a~~L~~~G~~V~~~D~~~   48 (473)
T PRK00141         11 PQELSGRVLVAGAGVS-GRGIAAMLSELGCDVVVADDNE   48 (473)
T ss_pred             ccccCCeEEEEccCHH-HHHHHHHHHHCCCEEEEECCCh
Confidence            3468899999999998 9999999999999999998653

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.00  E-value=0.015  Score=49.96  Aligned_cols=54  Identities=19%  Similarity=0.137  Sum_probs=44.6

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhhcCCCCEEEeccCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~~~aDiVIsAtg~p  190 (269)
                      .++.|||++|-+|..++.-+.++|.+||.+-|+.                   ..+.+.+...|+||+|.|..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~   73 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG   73 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence            4789999999999999999999999999887652                   12346678889999999853

>PLN02712 arogenate dehydrogenase

Probab=96.00  E-value=0.013  Score=59.81  Aligned_cols=75  Identities=19%  Similarity=0.250  Sum_probs=55.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhc-CCCCEEEeccCC---CCccc--
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQIT-SEADIVIAAAGV---ANLVR--  194 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~-~~aDiVIsAtg~---p~~i~--  194 (269)
                      -+.++|.|||.|.+ |..++..|.+.|.+|+++++..             .+..+.+ .+||+||-+++.   ...+.  
T Consensus        50 ~~~~kIgIIG~G~m-G~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l  128 (667)
T PLN02712         50 TTQLKIAIIGFGNY-GQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSL  128 (667)
T ss_pred             CCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhh
Confidence            34578999999886 9999999999998998887652             1233333 469999999983   22222  


Q ss_pred             -CCCcCCCcEEEEeee
Q 024306          195 -GSWLKPGAVVLDVGT  209 (269)
Q Consensus       195 -~~~~~~g~vViDv~~  209 (269)
                       ...++++++|+|++.
T Consensus       129 ~~~~l~~g~iVvDv~S  144 (667)
T PLN02712        129 PLQRLKRNTLFVDVLS  144 (667)
T ss_pred             hhhcCCCCeEEEECCC
Confidence             234688999999974

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=95.99  E-value=0.0088  Score=52.53  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=33.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++.+|+.+++.|+++|++|.++.|+
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~   43 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRD   43 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence            5789999999998888999999999999999988765

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=95.98  E-value=0.016  Score=55.75  Aligned_cols=38  Identities=24%  Similarity=0.297  Sum_probs=34.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..++||+++|.|+++.+|++++..|.++|++|.++.++
T Consensus       174 ~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~  211 (406)
T PRK07424        174 LSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSN  211 (406)
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46789999999999889999999999999999888765

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.94  E-value=0.018  Score=55.84  Aligned_cols=35  Identities=23%  Similarity=0.272  Sum_probs=32.3

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +.+|+|+|+|.|+. |++++..|.++|++|+++.+.
T Consensus        12 ~~~~~i~v~G~G~s-G~a~a~~L~~~G~~V~~~D~~   46 (458)
T PRK01710         12 IKNKKVAVVGIGVS-NIPLIKFLVKLGAKVTAFDKK   46 (458)
T ss_pred             hcCCeEEEEcccHH-HHHHHHHHHHCCCEEEEECCC
Confidence            46899999999998 999999999999999999864

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.94  E-value=0.013  Score=51.21  Aligned_cols=35  Identities=14%  Similarity=0.278  Sum_probs=30.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  168 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  168 (269)
                      .++.++|+|+|+||. |..+++.|+..|. ++++++.
T Consensus        25 ~L~~~~V~ViG~Ggl-Gs~ia~~La~~Gvg~i~lvD~   60 (212)
T PRK08644         25 KLKKAKVGIAGAGGL-GSNIAVALARSGVGNLKLVDF   60 (212)
T ss_pred             HHhCCCEEEECcCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence            367899999999997 9999999999997 5888853

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=95.93  E-value=0.012  Score=51.21  Aligned_cols=37  Identities=22%  Similarity=0.179  Sum_probs=33.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++.+|+++++.|+++|++|.++.|.
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~   38 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRS   38 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCc
Confidence            5789999999998888999999999999998888664

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=95.93  E-value=0.02  Score=50.66  Aligned_cols=37  Identities=27%  Similarity=0.258  Sum_probs=33.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++|+++|.|+++-+|+.+++.|+++|++|.++.++
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~   42 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIH   42 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998888999999999999998887654

>PTZ00117 malate dehydrogenase; Provisional

Probab=95.92  E-value=0.026  Score=52.43  Aligned_cols=55  Identities=24%  Similarity=0.449  Sum_probs=43.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC--------------------------CCHhhhcCCCCEEEec
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT--------------------------KNPEQITSEADIVIAA  186 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t--------------------------~~l~~~~~~aDiVIsA  186 (269)
                      .+.++|.|||+|. ||..+++.|+..| +++.+++...                          .++ +.+++||+||.+
T Consensus         3 ~~~~KI~IIGaG~-vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVVit   80 (319)
T PTZ00117          3 VKRKKISMIGAGQ-IGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVVIT   80 (319)
T ss_pred             CCCcEEEEECCCH-HHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEEEC
Confidence            4678999999966 5999999999888 6787775431                          233 478999999999


Q ss_pred             cCCC
Q 024306          187 AGVA  190 (269)
Q Consensus       187 tg~p  190 (269)
                      .|.|
T Consensus        81 ag~~   84 (319)
T PTZ00117         81 AGVQ   84 (319)
T ss_pred             CCCC
Confidence            9753

>PRK05866 short chain dehydrogenase; Provisional

Probab=95.90  E-value=0.014  Score=52.96  Aligned_cols=39  Identities=28%  Similarity=0.344  Sum_probs=34.6

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ...+++|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus        35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~   73 (293)
T PRK05866         35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARR   73 (293)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            456789999999998888999999999999999998775

>PRK08862 short chain dehydrogenase; Provisional

Probab=95.89  E-value=0.0085  Score=52.45  Aligned_cols=38  Identities=16%  Similarity=0.197  Sum_probs=34.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +++||+++|.|+|.-+|++++..|+++|++|.++.|+.
T Consensus         2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~   39 (227)
T PRK08862          2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQ   39 (227)
T ss_pred             CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            47899999999999899999999999999999987764

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.89  E-value=0.015  Score=56.93  Aligned_cols=35  Identities=20%  Similarity=0.214  Sum_probs=31.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..|++|+|+|.|.+ |++++..|..+|++|+++.+.
T Consensus        10 ~~~~~v~V~G~G~s-G~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         10 LPGAPVLVAGAGVT-GRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             cCCCeEEEEcCCHH-HHHHHHHHHHCCCEEEEEcCC
Confidence            36899999999998 999999999999999998754

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.89  E-value=0.015  Score=53.21  Aligned_cols=51  Identities=14%  Similarity=0.068  Sum_probs=42.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------CCHhhhcCCCCEEEeccC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAG  188 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------~~l~~~~~~aDiVIsAtg  188 (269)
                      +|+|+|++|.+|+.++..|.++|.+|+++.|+.                     .++.+.++.+|+||++++
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            699999999999999999999999999887652                     123456788899998765

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.87  E-value=0.019  Score=53.26  Aligned_cols=55  Identities=20%  Similarity=0.299  Sum_probs=43.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCCC-----------------------CHhhhcCCCCEEEeccCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALTK-----------------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t~-----------------------~l~~~~~~aDiVIsAtg~  189 (269)
                      .+++|.|||+|. ||.+++..|+.++.  ++.+++....                       +-.+.+++||+||.+.|.
T Consensus         5 ~~~ki~iiGaG~-vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~   83 (315)
T PRK00066          5 QHNKVVLVGDGA-VGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA   83 (315)
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence            578999999977 59999999998885  5888865421                       113568999999999986


Q ss_pred             C
Q 024306          190 A  190 (269)
Q Consensus       190 p  190 (269)
                      |
T Consensus        84 ~   84 (315)
T PRK00066         84 P   84 (315)
T ss_pred             C
Confidence            4

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.86  E-value=0.012  Score=55.73  Aligned_cols=35  Identities=26%  Similarity=0.506  Sum_probs=31.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  168 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  168 (269)
                      .+++++|+|+|.||. |..++..|+..|. ++++++.
T Consensus       132 ~l~~~~VlvvG~GG~-Gs~ia~~La~~Gvg~i~lvD~  167 (376)
T PRK08762        132 RLLEARVLLIGAGGL-GSPAALYLAAAGVGTLGIVDH  167 (376)
T ss_pred             HHhcCcEEEECCCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence            368999999999997 9999999999997 6888854

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.85  E-value=0.0088  Score=48.14  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=28.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  169 (269)
                      +.++|+|+|.|+. |..++..|+..|. ++++++..
T Consensus         1 r~~~v~iiG~G~v-Gs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    1 RNKRVLIIGAGGV-GSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             HT-EEEEESTSHH-HHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCCEEEEECcCHH-HHHHHHHHHHhCCCceeecCCc
Confidence            3689999999996 9999999999998 69999543

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.84  E-value=0.0099  Score=51.69  Aligned_cols=38  Identities=24%  Similarity=0.245  Sum_probs=34.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      ++++++++|+|+++.+|+.+++.|+++|++|+++.|+.
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~   39 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE   39 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            36889999999998899999999999999999987764

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.83  E-value=0.019  Score=52.55  Aligned_cols=52  Identities=25%  Similarity=0.369  Sum_probs=42.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------------------CCHhhhcCCCCEE
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------------KNPEQITSEADIV  183 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------------------~~l~~~~~~aDiV  183 (269)
                      ++|.|||+|.+ |.+++..|++.|.+|+++++..                                 .++.+.+++||+|
T Consensus         5 ~~I~vIGaG~m-G~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlV   83 (311)
T PRK06130          5 QNLAIIGAGTM-GSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLV   83 (311)
T ss_pred             cEEEEECCCHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEE
Confidence            67999999886 9999999999999999987532                                 1233457889999


Q ss_pred             EeccCC
Q 024306          184 IAAAGV  189 (269)
Q Consensus       184 IsAtg~  189 (269)
                      |.+++.
T Consensus        84 i~av~~   89 (311)
T PRK06130         84 IEAVPE   89 (311)
T ss_pred             EEeccC
Confidence            999874

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.82  E-value=0.0092  Score=52.36  Aligned_cols=38  Identities=21%  Similarity=0.225  Sum_probs=34.8

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..++||+++|.|+++.+|+.++..|+++|++|+++.|+
T Consensus         7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~   44 (256)
T PRK06124          7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRN   44 (256)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCC
Confidence            45789999999999999999999999999999998775

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.81  E-value=0.026  Score=54.70  Aligned_cols=122  Identities=21%  Similarity=0.152  Sum_probs=68.0

Q ss_pred             CccceEEEEcCCcccHHH-HHHHHHhCCCEEEEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcC-CCcEEEEeeecC
Q 024306          134 IMGKNAVVIGRSNIVGLP-TSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLK-PGAVVLDVGTCP  211 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~-~a~~L~~~ga~Vti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~-~g~vViDv~~~~  211 (269)
                      .++|+++|+|.|++ |++ +|+.|.++|++|++++.......+.+++..+.+.. |.+    ++.+. ...+|+--++++
T Consensus         5 ~~~~~v~viG~G~s-G~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~-~~~----~~~~~~~d~vv~spgi~~   78 (461)
T PRK00421          5 RRIKRIHFVGIGGI-GMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFI-GHD----AENIKDADVVVYSSAIPD   78 (461)
T ss_pred             CCCCEEEEEEEchh-hHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeC-CCC----HHHCCCCCEEEECCCCCC
Confidence            46789999999998 999 79999999999999986542221223322332221 211    11111 123333333333


Q ss_pred             CCCCC---CCCCceeecccchHH-HhhHcceecccCCcccHHHHHHHHHHHHHHH
Q 024306          212 VDDPS---CEYGYRLMGDVCYEE-AMRLASVITPVPGGVGPMTVAMLLSNTLDSA  262 (269)
Q Consensus       212 ~~~~~---~~~~~~l~GDvd~~~-~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~  262 (269)
                      ....-   ...+-+++++.++-. ..+.. .+.-|-|=-|.=|+..|+.+++++.
T Consensus        79 ~~~~~~~a~~~~i~i~~~~e~~~~~~~~~-~~I~ITGTnGKTTTt~ll~~iL~~~  132 (461)
T PRK00421         79 DNPELVAARELGIPVVRRAEMLAELMRFR-TSIAVAGTHGKTTTTSLLAHVLAEA  132 (461)
T ss_pred             CCHHHHHHHHCCCcEEeHHHHHHHHHccC-cEEEEECCCCHHHHHHHHHHHHHhc
Confidence            21000   001125677776532 22111 1223457778999999999998764

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=95.80  E-value=0.021  Score=50.38  Aligned_cols=37  Identities=16%  Similarity=0.031  Sum_probs=31.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +..+++++|+|++|.+|+.++..|.++|++|+.+.|.
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~   50 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRD   50 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecC
Confidence            4568999999998888999999999999998877553

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.79  E-value=0.023  Score=51.89  Aligned_cols=32  Identities=16%  Similarity=0.242  Sum_probs=28.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|.|||+|.+ |..+|..++..|..|++.++.
T Consensus         6 ~~V~ViGaG~m-G~~iA~~~a~~G~~V~l~d~~   37 (286)
T PRK07819          6 QRVGVVGAGQM-GAGIAEVCARAGVDVLVFETT   37 (286)
T ss_pred             cEEEEEcccHH-HHHHHHHHHhCCCEEEEEECC
Confidence            47999999886 999999999999999999654

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.79  E-value=0.094  Score=49.99  Aligned_cols=124  Identities=22%  Similarity=0.255  Sum_probs=84.4

Q ss_pred             CCCHHHHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhC---------------------------
Q 024306           79 HLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSG---------------------------  131 (269)
Q Consensus        79 ~~~~~~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~---------------------------  131 (269)
                      +.|...+.+.|-.++.+.. |..|.|-   ||.-.+| |-|..+.+...++++                           
T Consensus       231 g~D~~~V~~gIGlD~RIG~-~fl~aG~---GyGGsCf-PKD~~AL~~~a~~~~~~~~ll~avv~vN~~qk~~~~~~i~~~  305 (414)
T COG1004         231 GADVKQVAEGIGLDPRIGN-HFLNAGF---GYGGSCF-PKDTKALIANAEELGYDPNLLEAVVEVNERRKDKLAEKILNH  305 (414)
T ss_pred             CCCHHHHHHHcCCCchhhH-hhCCCCC---CCCCcCC-cHhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4467888888887777653 4445443   3333344 667677666665544                           


Q ss_pred             CCCccceEEEEcCC---------cccHHHHHHHHHhCCCEEEEEeCC--------------CCCHhhhcCCCCEEEeccC
Q 024306          132 VEIMGKNAVVIGRS---------NIVGLPTSLLLQRHHATVSIVHAL--------------TKNPEQITSEADIVIAAAG  188 (269)
Q Consensus       132 ~~l~gk~v~ViG~g---------g~vg~~~a~~L~~~ga~Vti~~~~--------------t~~l~~~~~~aDiVIsAtg  188 (269)
                      ..++||+|.|+|-.         .+-...++.+|..+||+|.+....              ..+..+.+++||++|..|.
T Consensus       306 ~~l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te  385 (414)
T COG1004         306 LGLKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE  385 (414)
T ss_pred             cCCCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc
Confidence            23789999999922         223789999999999999998543              2467788999999999999


Q ss_pred             CCCcccCCC---cCCCcEEEEe
Q 024306          189 VANLVRGSW---LKPGAVVLDV  207 (269)
Q Consensus       189 ~p~~i~~~~---~~~g~vViDv  207 (269)
                      ...|-..++   +-++.+|+|.
T Consensus       386 w~ef~~~d~~~~~m~~~~v~Dg  407 (414)
T COG1004         386 WDEFRDLDFEKLLMKTPVVIDG  407 (414)
T ss_pred             HHHHhccChhhhhccCCEEEec
Confidence            766644332   2245567773

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=95.78  E-value=0.0082  Score=55.24  Aligned_cols=90  Identities=24%  Similarity=0.292  Sum_probs=64.1

Q ss_pred             HHHHHHHHH----------hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC---------------------
Q 024306          121 KGCIELLIR----------SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---------------------  169 (269)
Q Consensus       121 ~g~~~~l~~----------~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~---------------------  169 (269)
                      .+++..+.+          .+...++.+++++|.|-+ |-.++..-...|+-|+-..-.                     
T Consensus       139 ~aVi~Aa~a~~rffpm~~TAagtv~pA~vlv~G~Gva-gl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee  217 (356)
T COG3288         139 IAVIGAALAYGRFFPMQITAAGTVSPAKVLVIGAGVA-GLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEE  217 (356)
T ss_pred             HHHHHHHHHhhhcccchhhhcccccchhhhhhhHHHH-HHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccc
Confidence            556666666          345678899999999776 877776666667766654211                     


Q ss_pred             ---------C--------CCHhhhcCCCCEEEeccC-----CCCcccCCCc---CCCcEEEEeeecC
Q 024306          170 ---------T--------KNPEQITSEADIVIAAAG-----VANLVRGSWL---KPGAVVLDVGTCP  211 (269)
Q Consensus       170 ---------t--------~~l~~~~~~aDiVIsAtg-----~p~~i~~~~~---~~g~vViDv~~~~  211 (269)
                               +        +-+.+..++.||||++.=     .|.+++.+|+   |||.+|+|++...
T Consensus       218 ~~gGYAk~ms~~~~~~q~~~~a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~  284 (356)
T COG3288         218 SAGGYAKEMSEEFIAKQAELVAEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAET  284 (356)
T ss_pred             cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhc
Confidence                     0        123578899999998773     3557899885   8999999998643

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.78  E-value=0.014  Score=51.46  Aligned_cols=52  Identities=23%  Similarity=0.338  Sum_probs=42.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------------------CCHhhh-cCCCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------------KNPEQI-TSEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------------------~~l~~~-~~~aDiVIsAtg~  189 (269)
                      ++++|+|+|.. |..+|+.|.++|.+|++..+..                       .-|.++ +.+||++|.+||.
T Consensus         1 m~iiIiG~G~v-G~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~   76 (225)
T COG0569           1 MKIIIIGAGRV-GRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN   76 (225)
T ss_pred             CEEEEECCcHH-HHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence            57999999996 9999999999999999886542                       113333 7889999999985

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=95.78  E-value=0.054  Score=50.96  Aligned_cols=76  Identities=20%  Similarity=0.274  Sum_probs=52.5

Q ss_pred             ccCCHHHHHHHHHHhC------CCCccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCC------------------C
Q 024306          116 IPCTPKGCIELLIRSG------VEIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHAL------------------T  170 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~------~~l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~------------------t  170 (269)
                      +|.++.-.++.|-+..      -.-+|+.|+|+|+|+.||..+++.+...+ +.|+.+.+.                  +
T Consensus       132 ~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy~~  211 (347)
T KOG1198|consen  132 LPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVVDYKD  211 (347)
T ss_pred             CchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHcCCcEeecCCC
Confidence            4555555555555555      44579999999999999999999999999 555544332                  1


Q ss_pred             CCHhhhcCC-----CCEEEeccCCCC
Q 024306          171 KNPEQITSE-----ADIVIAAAGVAN  191 (269)
Q Consensus       171 ~~l~~~~~~-----aDiVIsAtg~p~  191 (269)
                      .+..+.++.     .|+|+.++|.+.
T Consensus       212 ~~~~e~~kk~~~~~~DvVlD~vg~~~  237 (347)
T KOG1198|consen  212 ENVVELIKKYTGKGVDVVLDCVGGST  237 (347)
T ss_pred             HHHHHHHHhhcCCCccEEEECCCCCc
Confidence            233344444     799999988753

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.78  E-value=0.032  Score=51.93  Aligned_cols=55  Identities=25%  Similarity=0.381  Sum_probs=43.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHhhhcCCCCEEEec
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAA  186 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~aDiVIsA  186 (269)
                      ++.++|.|||+|.+ |..++..++..|. +|.+.+...                          .++ +.+++||+||.+
T Consensus         4 ~~~~KI~IIGaG~v-G~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~t   81 (321)
T PTZ00082          4 IKRRKISLIGSGNI-GGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVT   81 (321)
T ss_pred             CCCCEEEEECCCHH-HHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEEC
Confidence            45579999999775 9999999998884 777775431                          233 578999999999


Q ss_pred             cCCC
Q 024306          187 AGVA  190 (269)
Q Consensus       187 tg~p  190 (269)
                      .|.|
T Consensus        82 ag~~   85 (321)
T PTZ00082         82 AGLT   85 (321)
T ss_pred             CCCC
Confidence            9864

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.76  E-value=0.0054  Score=57.96  Aligned_cols=112  Identities=21%  Similarity=0.256  Sum_probs=68.2

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-------------------------CCHhhhcCCCCEEEeccCCCC
Q 024306          139 AVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-------------------------KNPEQITSEADIVIAAAGVAN  191 (269)
Q Consensus       139 v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-------------------------~~l~~~~~~aDiVIsAtg~p~  191 (269)
                      |+|+|+ |.+|++++..|++++-  +|++..|+.                         .++.+.++++|+||+++|...
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~   79 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFF   79 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccch
Confidence            689999 5569999999998874  799997752                         125678999999999998531


Q ss_pred             -c-ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHH
Q 024306          192 -L-VRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAK  263 (269)
Q Consensus       192 -~-i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~  263 (269)
                       . +-...++.|.-.+|..+-.          ...-..  ++.+++++..-=+-=|.-|--+.+|...+++.+.
T Consensus        80 ~~~v~~~~i~~g~~yvD~~~~~----------~~~~~l--~~~a~~~g~~~l~~~G~~PGl~~~~a~~~~~~~~  141 (386)
T PF03435_consen   80 GEPVARACIEAGVHYVDTSYVT----------EEMLAL--DEEAKEAGVTALPGCGFDPGLSNLLARYAADELD  141 (386)
T ss_dssp             HHHHHHHHHHHT-EEEESS-HH----------HHHHHC--HHHHHHTTSEEE-S-BTTTBHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhCCCeeccchhH----------HHHHHH--HHHHHhhCCEEEeCcccccchHHHHHHHHHHHhh
Confidence             1 3334566788899965411          111111  2334444432211336667778888888887765

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=95.75  E-value=0.094  Score=52.04  Aligned_cols=135  Identities=20%  Similarity=0.295  Sum_probs=88.1

Q ss_pred             HHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceeccccc
Q 024306           29 KIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAM  108 (269)
Q Consensus        29 ~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~l~~  108 (269)
                      .....++.+++-..+..| +.+++++.+.++.++..    |+.|.. +|.   ...+.+.....++++-      --|. 
T Consensus       169 i~~~v~~~~~~~iiiAip-s~~~~~~~~i~~~l~~~----~~~v~~-lP~---~~~l~~~~~~lreI~i------eDLL-  232 (588)
T COG1086         169 IERVVEELGIQLILIAIP-SASQEERRRILLRLART----GIAVRI-LPQ---LTDLKDLNGQLREIEI------EDLL-  232 (588)
T ss_pred             HHHHHHHcCCceEEEecC-CCCHHHHHHHHHHHHhc----CCcEEe-cCc---HHHHHHhccccccCCH------HHHh-
Confidence            566888999998878877 46889999999999884    343332 221   2445553433444332      1122 


Q ss_pred             CCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-----------------
Q 024306          109 RGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-----------------  170 (269)
Q Consensus       109 g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-----------------  170 (269)
                      |  ++ -++.+...+...       +.||+|+|-|+||++|+.+++.+++.++ ++.++.+..                 
T Consensus       233 g--R~-pV~~d~~~i~~~-------~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~  302 (588)
T COG1086         233 G--RP-PVALDTELIGAM-------LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPEL  302 (588)
T ss_pred             C--CC-CCCCCHHHHHhH-------cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCc
Confidence            3  11 123343333333       5899999999999999999999999997 577775541                 


Q ss_pred             ------------CCHhhhcCC--CCEEEeccCC
Q 024306          171 ------------KNPEQITSE--ADIVIAAAGV  189 (269)
Q Consensus       171 ------------~~l~~~~~~--aDiVIsAtg~  189 (269)
                                  ..+...+++  -|+|+.|.-.
T Consensus       303 ~~~~~igdVrD~~~~~~~~~~~kvd~VfHAAA~  335 (588)
T COG1086         303 KLRFYIGDVRDRDRVERAMEGHKVDIVFHAAAL  335 (588)
T ss_pred             ceEEEecccccHHHHHHHHhcCCCceEEEhhhh
Confidence                        123455666  8999988874

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=95.75  E-value=0.011  Score=52.01  Aligned_cols=37  Identities=22%  Similarity=0.280  Sum_probs=34.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++|+++|.|+++-+|+.+++.|+++|++|.++.|+
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~   42 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDIT   42 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCC
Confidence            4789999999999989999999999999999988765

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=95.74  E-value=0.024  Score=50.86  Aligned_cols=52  Identities=29%  Similarity=0.367  Sum_probs=41.1

Q ss_pred             EEEEcCCcccHHHHHHHHHhCC----CEEEEEeCC-------------------------CCCHhhhcCCCCEEEeccCC
Q 024306          139 AVVIGRSNIVGLPTSLLLQRHH----ATVSIVHAL-------------------------TKNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       139 v~ViG~gg~vg~~~a~~L~~~g----a~Vti~~~~-------------------------t~~l~~~~~~aDiVIsAtg~  189 (269)
                      |+|||+||.+|..++..|+..+    .++.+.+..                         +.++.+.+++||+||.+.|.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            5799997778999999999888    468887543                         13446788999999998886


Q ss_pred             C
Q 024306          190 A  190 (269)
Q Consensus       190 p  190 (269)
                      |
T Consensus        81 ~   81 (263)
T cd00650          81 G   81 (263)
T ss_pred             C
Confidence            4

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK06172 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.01  Score=51.91  Aligned_cols=37  Identities=30%  Similarity=0.358  Sum_probs=33.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++|+++|.|+++.+|+.+++.|+++|++|.++.|+
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~   40 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRD   40 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            4689999999999999999999999999999888775

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.74  E-value=0.095  Score=51.37  Aligned_cols=154  Identities=16%  Similarity=0.091  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCC------CCCHHHHHhcCCccc----
Q 024306           24 TYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQ------HLDEGKILDAVSLEK----   93 (269)
Q Consensus        24 ~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~------~~~~~~i~~~i~p~k----   93 (269)
                      +|.+-..+.|+++|+              ++.+.++.++.|+.+ |.....|=+.      ..|...+........    
T Consensus       228 af~NEla~lce~~gi--------------D~~eV~~~~~~d~ri-g~~~l~PG~G~GG~ClpkD~~~L~~~a~~~g~~~~  292 (473)
T PLN02353        228 SSVNAMSALCEATGA--------------DVSQVSHAVGKDSRI-GPKFLNASVGFGGSCFQKDILNLVYICECNGLPEV  292 (473)
T ss_pred             HHHHHHHHHHHHhCC--------------CHHHHHHHhCCCCcC-CCCCCCCCCCCCCcchhhhHHHHHHHHHHcCCchH


Q ss_pred             --cccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEc----------CCcccHHHHHHHHHhCCC
Q 024306           94 --DVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIG----------RSNIVGLPTSLLLQRHHA  161 (269)
Q Consensus        94 --dvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG----------~gg~vg~~~a~~L~~~ga  161 (269)
                        -++.+..+|..+-.             .-+-++.+...-+++|++|+|+|          |.-. +..++..|.++|+
T Consensus       293 ~~l~~~~~~iN~~~~~-------------~vv~~~~~~l~~~~~~~~VavlGlafK~~tdD~R~Sp-a~~li~~L~~~G~  358 (473)
T PLN02353        293 AEYWKQVIKMNDYQKS-------------RFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETP-AIDVCKGLLGDKA  358 (473)
T ss_pred             HHHHHHHHHHHHhhHH-------------HHHHHHHHHhhcccCCCEEEEEeeeecCCCCccccCh-HHHHHHHHHhCCC


Q ss_pred             EEEEEeCC------------------------------------CCCHhhhcCCCCEEEeccCCCCc--cc----CCCcC
Q 024306          162 TVSIVHAL------------------------------------TKNPEQITSEADIVIAAAGVANL--VR----GSWLK  199 (269)
Q Consensus       162 ~Vti~~~~------------------------------------t~~l~~~~~~aDiVIsAtg~p~~--i~----~~~~~  199 (269)
                      +|.+....                                    ..++.+.+++||+||.+|..+.+  ++    .+.++
T Consensus       359 ~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~  438 (473)
T PLN02353        359 KLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQ  438 (473)
T ss_pred             EEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhcc


Q ss_pred             CCcEEEE
Q 024306          200 PGAVVLD  206 (269)
Q Consensus       200 ~g~vViD  206 (269)
                      +..+|+|
T Consensus       439 ~~~~viD  445 (473)
T PLN02353        439 KPAFVFD  445 (473)
T ss_pred             CCCEEEE

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.73  E-value=0.016  Score=52.82  Aligned_cols=32  Identities=19%  Similarity=0.210  Sum_probs=29.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|.|||.|.+ |.++|..|+..|.+|++++++
T Consensus         5 ~~V~vIG~G~m-G~~iA~~l~~~G~~V~~~d~~   36 (295)
T PLN02545          5 KKVGVVGAGQM-GSGIAQLAAAAGMDVWLLDSD   36 (295)
T ss_pred             CEEEEECCCHH-HHHHHHHHHhcCCeEEEEeCC
Confidence            67999999887 999999999999999999764

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.72  E-value=0.013  Score=50.13  Aligned_cols=53  Identities=26%  Similarity=0.309  Sum_probs=35.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC----------------------------------CCCHhhhcCCCCE
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------------------TKNPEQITSEADI  182 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------------------t~~l~~~~~~aDi  182 (269)
                      ++|.|+|.|-. |-++|..|++.|.+|+-+...                                  +.+..+.+++||+
T Consensus         1 M~I~ViGlGyv-Gl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv   79 (185)
T PF03721_consen    1 MKIAVIGLGYV-GLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADV   79 (185)
T ss_dssp             -EEEEE--STT-HHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SE
T ss_pred             CEEEEECCCcc-hHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccce
Confidence            47999999886 999999999999999999543                                  1234566788888


Q ss_pred             EEeccCCC
Q 024306          183 VIAAAGVA  190 (269)
Q Consensus       183 VIsAtg~p  190 (269)
                      +|-++|.|
T Consensus        80 ~~I~VpTP   87 (185)
T PF03721_consen   80 VFICVPTP   87 (185)
T ss_dssp             EEE----E
T ss_pred             EEEecCCC
Confidence            88888754

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK08628 short chain dehydrogenase; Provisional

Probab=95.72  E-value=0.017  Score=50.81  Aligned_cols=39  Identities=23%  Similarity=0.248  Sum_probs=34.5

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++++||+++|.|+++.+|+.+++.|+++|++|.++.+.
T Consensus         2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~   40 (258)
T PRK08628          2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRS   40 (258)
T ss_pred             CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCC
Confidence            367899999999999889999999999999998877654

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.71  E-value=0.029  Score=52.27  Aligned_cols=51  Identities=22%  Similarity=0.149  Sum_probs=43.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC----------------------------------CCCHhhhcCCCCE
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------------------TKNPEQITSEADI  182 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------------------t~~l~~~~~~aDi  182 (269)
                      ++|.|||+|-+ |..+|..++..|.+|++.++.                                  +.++.+.+.+||+
T Consensus         8 ~~VaVIGaG~M-G~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl   86 (321)
T PRK07066          8 KTFAAIGSGVI-GSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF   86 (321)
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence            68999999886 999999999999999998653                                  1245577899999


Q ss_pred             EEeccC
Q 024306          183 VIAAAG  188 (269)
Q Consensus       183 VIsAtg  188 (269)
                      ||.+++
T Consensus        87 ViEavp   92 (321)
T PRK07066         87 IQESAP   92 (321)
T ss_pred             EEECCc
Confidence            999987

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.69  E-value=0.017  Score=54.78  Aligned_cols=34  Identities=21%  Similarity=0.434  Sum_probs=30.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEe
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH  167 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~  167 (269)
                      .+++++|+|+|+||. |.+++..|+..|. ++++++
T Consensus        38 ~l~~~~VliiG~Ggl-G~~v~~~La~~Gvg~i~ivD   72 (370)
T PRK05600         38 RLHNARVLVIGAGGL-GCPAMQSLASAGVGTITLID   72 (370)
T ss_pred             HhcCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEe
Confidence            467899999999997 9999999999996 799984

>PRK08339 short chain dehydrogenase; Provisional

Probab=95.69  E-value=0.014  Score=51.95  Aligned_cols=38  Identities=24%  Similarity=0.322  Sum_probs=33.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||.++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~   41 (263)
T PRK08339          4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRN   41 (263)
T ss_pred             cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999998878999999999999999998765

>PLN02477 glutamate dehydrogenase

Probab=95.68  E-value=0.028  Score=54.10  Aligned_cols=159  Identities=16%  Similarity=0.179  Sum_probs=83.2

Q ss_pred             CeEEEEEeCCCc---chHHHHHHHHHHHHHcCCeE-----EEEEcCCCCCHHHHHHHHHhhhcC-CCcCEEEEeCCCCCC
Q 024306            9 PGLAVILVGERR---DSQTYVRNKIKACEEVGIKS-----IVTEFADGCTEDEVLNALSNYNQD-SSINGILVQLPLPQH   79 (269)
Q Consensus         9 p~L~~i~vg~~~---~s~~y~~~~~~~~~~~Gi~~-----~~~~~~~~~~~~~l~~~i~~ln~d-~~v~Gi~V~~Pl~~~   79 (269)
                      |...-+|.-...   .....+..+.--|.-.|+.+     ....=|.+.++.|++...+.+-.- ..+.|-..-+|=|.-
T Consensus        64 P~kGGiR~~p~v~~~ev~~La~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~e~e~l~r~f~~~l~~~iG~~~DipapDv  143 (410)
T PLN02477         64 PMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERLTRVFTQKIHDLIGIHTDVPAPDM  143 (410)
T ss_pred             CCCCCeeecCCCCHHHHHHHHHHHHHHHHhcCCCCcCceeeeccCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCC
Confidence            555555553322   22344555555555565544     222224444556666555544321 123444433454442


Q ss_pred             CCHHHHHhcCC-cccccccccc-ceecc-cccCCCCCccccCCHHHHHHHH----HHhCCCCccceEEEEcCCcccHHHH
Q 024306           80 LDEGKILDAVS-LEKDVDGFHP-LNIGN-LAMRGREPLFIPCTPKGCIELL----IRSGVEIMGKNAVVIGRSNIVGLPT  152 (269)
Q Consensus        80 ~~~~~i~~~i~-p~kdvdg~~~-~n~g~-l~~g~~~~~~~p~t~~g~~~~l----~~~~~~l~gk~v~ViG~gg~vg~~~  152 (269)
                      -.....+..+- .-+.+.|.++ +-+|+ +..|. ..+-.+.|++|+...+    ++.+.+++|++|+|.|.|.+ |+.+
T Consensus       144 gt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gG-s~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnV-G~~~  221 (410)
T PLN02477        144 GTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGG-SLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNV-GSWA  221 (410)
T ss_pred             CCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCC-CCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCHH-HHHH
Confidence            21122333221 1122122110 01221 11111 1223467988875554    55788999999999999885 9999


Q ss_pred             HHHHHhCCCEEE-EEeCC
Q 024306          153 SLLLQRHHATVS-IVHAL  169 (269)
Q Consensus       153 a~~L~~~ga~Vt-i~~~~  169 (269)
                      ++.|.++|++|+ |++++
T Consensus       222 A~~L~e~GakVVaVsD~~  239 (410)
T PLN02477        222 AQLIHEKGGKIVAVSDIT  239 (410)
T ss_pred             HHHHHHcCCEEEEEECCC
Confidence            999999999976 77654

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.67  E-value=0.018  Score=54.31  Aligned_cols=34  Identities=24%  Similarity=0.485  Sum_probs=30.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEe
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH  167 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~  167 (269)
                      .+++++|+|+|.||. |.+++..|+..|. ++++++
T Consensus        25 ~L~~~~VlivG~GGl-Gs~~a~~La~~Gvg~i~lvD   59 (355)
T PRK05597         25 SLFDAKVAVIGAGGL-GSPALLYLAGAGVGHITIID   59 (355)
T ss_pred             HHhCCeEEEECCCHH-HHHHHHHHHHcCCCeEEEEe
Confidence            367899999999997 9999999999996 688884

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.67  E-value=0.016  Score=50.41  Aligned_cols=51  Identities=14%  Similarity=0.044  Sum_probs=42.4

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------------------CCHhhhcCCCCEEEeccCC
Q 024306          139 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       139 v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      |+|+|+.|.+|++++..|.+.+.+|+++.|..                       +.+.+.++.+|.||..++.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence            68999988899999999999999999998863                       1345678888888888874

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.67  E-value=0.017  Score=52.50  Aligned_cols=32  Identities=25%  Similarity=0.292  Sum_probs=29.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|.|||+|.+ |.+++..|++.|.+|++++++
T Consensus         4 ~~I~ViGaG~m-G~~iA~~la~~G~~V~l~d~~   35 (291)
T PRK06035          4 KVIGVVGSGVM-GQGIAQVFARTGYDVTIVDVS   35 (291)
T ss_pred             cEEEEECccHH-HHHHHHHHHhcCCeEEEEeCC
Confidence            67999999886 999999999999999999764

>PRK06138 short chain dehydrogenase; Provisional

Probab=95.66  E-value=0.015  Score=50.58  Aligned_cols=37  Identities=27%  Similarity=0.389  Sum_probs=33.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus         2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~   38 (252)
T PRK06138          2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRD   38 (252)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCC
Confidence            4689999999999999999999999999998888665

>PRK06841 short chain dehydrogenase; Provisional

Probab=95.65  E-value=0.02  Score=50.11  Aligned_cols=38  Identities=26%  Similarity=0.376  Sum_probs=34.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++.+|+.+++.|+++|++|.++.|.
T Consensus        11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~   48 (255)
T PRK06841         11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRS   48 (255)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999998888999999999999999888765

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.64  E-value=0.044  Score=50.67  Aligned_cols=85  Identities=15%  Similarity=0.196  Sum_probs=57.2

Q ss_pred             HHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHhhhc---CCC
Q 024306          124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPEQIT---SEA  180 (269)
Q Consensus       124 ~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l~~~~---~~a  180 (269)
                      ...+++.+. ..|++|+|+|+|+ +|..+++++..+|+ .|+++.+..                   .++.+..   ...
T Consensus       159 ~~al~~~~~-~~g~~VlV~G~G~-vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~  236 (343)
T PRK09880        159 IHAAHQAGD-LQGKRVFVSGVGP-IGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYF  236 (343)
T ss_pred             HHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCC
Confidence            333444333 4799999999866 59999999999998 576664331                   1222222   137


Q ss_pred             CEEEeccCCCCcc--cCCCcCCCcEEEEeeec
Q 024306          181 DIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       181 DiVIsAtg~p~~i--~~~~~~~g~vViDv~~~  210 (269)
                      |+||.++|.+..+  .-+.++++-.++.+|..
T Consensus       237 D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~  268 (343)
T PRK09880        237 DVSFEVSGHPSSINTCLEVTRAKGVMVQVGMG  268 (343)
T ss_pred             CEEEECCCCHHHHHHHHHHhhcCCEEEEEccC
Confidence            9999999976432  23467888888888864

>PRK07062 short chain dehydrogenase; Provisional

Probab=95.63  E-value=0.014  Score=51.62  Aligned_cols=38  Identities=37%  Similarity=0.433  Sum_probs=34.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||.++|.|+++-+|+.+++.|+++|++|+++.|+
T Consensus         4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~   41 (265)
T PRK07062          4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRD   41 (265)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            46789999999999888999999999999999988765

>PRK05717 oxidoreductase; Validated

Probab=95.61  E-value=0.02  Score=50.32  Aligned_cols=39  Identities=21%  Similarity=0.160  Sum_probs=34.5

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ...++||+++|.|+++.+|+.++..|+++|++|.++.+.
T Consensus         5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~   43 (255)
T PRK05717          5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLD   43 (255)
T ss_pred             CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC
Confidence            456899999999998889999999999999999888543

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=95.61  E-value=0.021  Score=52.59  Aligned_cols=56  Identities=16%  Similarity=0.127  Sum_probs=42.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCCCC-------------------------CHhhhcCCCCEEEec
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALTK-------------------------NPEQITSEADIVIAA  186 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~t~-------------------------~l~~~~~~aDiVIsA  186 (269)
                      ++||+++|.|++|.+|+.++..|+++|  ++|+++.+...                         ++.+.+++.|+||..
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~   81 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA   81 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence            478999999999989999999999886  67887754321                         123445678888877


Q ss_pred             cCC
Q 024306          187 AGV  189 (269)
Q Consensus       187 tg~  189 (269)
                      .|.
T Consensus        82 Ag~   84 (324)
T TIGR03589        82 AAL   84 (324)
T ss_pred             ccc
Confidence            763

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK12829 short chain dehydrogenase; Provisional

Probab=95.61  E-value=0.018  Score=50.57  Aligned_cols=38  Identities=16%  Similarity=0.190  Sum_probs=34.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++++++++|+|+++.+|+.++..|.++|++|+++.|.
T Consensus         7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~   44 (264)
T PRK12829          7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVS   44 (264)
T ss_pred             hccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            34789999999999999999999999999999888764

>PRK14031 glutamate dehydrogenase; Provisional

Probab=95.60  E-value=0.028  Score=54.55  Aligned_cols=52  Identities=23%  Similarity=0.241  Sum_probs=43.2

Q ss_pred             ccccCCHHHHHHHH----HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEE
Q 024306          114 LFIPCTPKGCIELL----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  166 (269)
Q Consensus       114 ~~~p~t~~g~~~~l----~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~  166 (269)
                      +-.+.|++|++..+    ++.+.+++|++|+|.|.|.+ |..+++.|.+.||+|+.+
T Consensus       202 ~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNV-G~~aA~~L~e~GAkVVaV  257 (444)
T PRK14031        202 IRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNV-AQYTAEKVLELGGKVVTM  257 (444)
T ss_pred             CCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEE
Confidence            33477999876554    55688999999999999885 999999999999997764

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=95.59  E-value=0.031  Score=48.84  Aligned_cols=69  Identities=20%  Similarity=0.250  Sum_probs=48.5

Q ss_pred             eEEEEc-CCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------------CHhhhcCCCCEEEeccCCCC
Q 024306          138 NAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALTK-------------------------NPEQITSEADIVIAAAGVAN  191 (269)
Q Consensus       138 ~v~ViG-~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------------~l~~~~~~aDiVIsAtg~p~  191 (269)
                      +|.||| +|. +|.+++..|.+.|.+|++.+|+.+                         +..+.++++|+||.+++...
T Consensus         2 kI~IIGG~G~-mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~   80 (219)
T TIGR01915         2 KIAVLGGTGD-QGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH   80 (219)
T ss_pred             EEEEEcCCCH-HHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence            689998 565 599999999999999998876531                         22345678999999998533


Q ss_pred             c---cc--CCCcCCCcEEEEee
Q 024306          192 L---VR--GSWLKPGAVVLDVG  208 (269)
Q Consensus       192 ~---i~--~~~~~~g~vViDv~  208 (269)
                      +   +.  ...++ +.+|||+.
T Consensus        81 ~~~~l~~l~~~l~-~~vvI~~~  101 (219)
T TIGR01915        81 VLKTLESLRDELS-GKLVISPV  101 (219)
T ss_pred             HHHHHHHHHHhcc-CCEEEEec
Confidence            2   11  11233 47888874

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=95.58  E-value=0.036  Score=50.59  Aligned_cols=36  Identities=25%  Similarity=0.023  Sum_probs=31.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      -.||+|+|.|++|.+|+.++..|.++|.+|+.+.|.
T Consensus         3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   38 (322)
T PLN02986          3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRD   38 (322)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            358999999999999999999999999998876543

>PRK07063 short chain dehydrogenase; Provisional

Probab=95.57  E-value=0.014  Score=51.50  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=33.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++||+++|.|+++-+|+.+++.|+++|++|.++.|+
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~   40 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLD   40 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998888999999999999999888764

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=95.57  E-value=0.018  Score=50.91  Aligned_cols=37  Identities=16%  Similarity=0.203  Sum_probs=33.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++|+++|.|+++-+|+.+++.|+++|++|.++.|.
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~   38 (262)
T TIGR03325         2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS   38 (262)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            3679999999998888999999999999999988765

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK05867 short chain dehydrogenase; Provisional

Probab=95.57  E-value=0.017  Score=50.71  Aligned_cols=37  Identities=27%  Similarity=0.363  Sum_probs=33.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+.+++.|+++|++|.++.|.
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~   42 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARH   42 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            4789999999998878999999999999999988765

>PRK06057 short chain dehydrogenase; Provisional

Probab=95.56  E-value=0.018  Score=50.67  Aligned_cols=36  Identities=31%  Similarity=0.353  Sum_probs=33.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++||+++|+|+++.+|+.+++.|+++|++|.++.++
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~   40 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDID   40 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            689999999998888999999999999999988765

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.56  E-value=0.017  Score=50.56  Aligned_cols=36  Identities=25%  Similarity=0.238  Sum_probs=32.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++|+++|.|+++.+|+.++..|+++|++|.++.|.
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~   38 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAART   38 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence            578999999999999999999999999999888764

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.55  E-value=0.021  Score=53.55  Aligned_cols=35  Identities=26%  Similarity=0.461  Sum_probs=31.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  168 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  168 (269)
                      .++.++|+|+|+|+. |.+++..|+..|. ++++++.
T Consensus        21 ~L~~~~VlVvG~Ggl-Gs~va~~La~aGvg~i~lvD~   56 (339)
T PRK07688         21 KLREKHVLIIGAGAL-GTANAEMLVRAGVGKVTIVDR   56 (339)
T ss_pred             HhcCCcEEEECCCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence            367899999999996 9999999999997 7999854

>PRK08265 short chain dehydrogenase; Provisional

Probab=95.55  E-value=0.017  Score=51.21  Aligned_cols=37  Identities=30%  Similarity=0.390  Sum_probs=33.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDID   39 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999998888999999999999999998765

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.54  E-value=0.029  Score=51.58  Aligned_cols=52  Identities=21%  Similarity=0.245  Sum_probs=42.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------------------------CCHhhhcC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------------KNPEQITS  178 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------------------------~~l~~~~~  178 (269)
                      ++|.|||+|-+ |.+++..|++.|.+|++++++.                                      .++.+.++
T Consensus         3 ~~V~VIG~G~m-G~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~   81 (308)
T PRK06129          3 GSVAIIGAGLI-GRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA   81 (308)
T ss_pred             cEEEEECccHH-HHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence            47999998775 9999999999999999997652                                      13345678


Q ss_pred             CCCEEEeccCC
Q 024306          179 EADIVIAAAGV  189 (269)
Q Consensus       179 ~aDiVIsAtg~  189 (269)
                      ++|+||.+++.
T Consensus        82 ~ad~Vi~avpe   92 (308)
T PRK06129         82 DADYVQESAPE   92 (308)
T ss_pred             CCCEEEECCcC
Confidence            99999999874

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.54  E-value=0.015  Score=54.28  Aligned_cols=76  Identities=22%  Similarity=0.246  Sum_probs=52.1

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCCC---------------CCH-hhhcCCCCEEEeccCCCC--ccc
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT---------------KNP-EQITSEADIVIAAAGVAN--LVR  194 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~t---------------~~l-~~~~~~aDiVIsAtg~p~--~i~  194 (269)
                      +.+|.|+|++|.+|+.++++|.+++.   ++..+.+..               .++ ...+.++|+||.|+|...  -+-
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~   80 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKYA   80 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHHH
Confidence            36899999999999999999998764   445554331               011 123468999999998521  122


Q ss_pred             CCCcCCCcEEEEeeecC
Q 024306          195 GSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       195 ~~~~~~g~vViDv~~~~  211 (269)
                      +..++.|++|||++-.+
T Consensus        81 ~~~~~~G~~VIDlS~~~   97 (334)
T PRK14874         81 PKAAAAGAVVIDNSSAF   97 (334)
T ss_pred             HHHHhCCCEEEECCchh
Confidence            33456788999998654

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.54  E-value=0.026  Score=55.00  Aligned_cols=58  Identities=14%  Similarity=0.194  Sum_probs=44.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-CCH-----------------hhhcCCCCEEEeccCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KNP-----------------EQITSEADIVIAAAGVA  190 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~l-----------------~~~~~~aDiVIsAtg~p  190 (269)
                      ++++||+|+|||+|.+ |.-=+..|.+.||.|+|+...- +++                 .+.++.+++||.||+-+
T Consensus         8 ~~l~~~~vlvvGgG~v-A~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~   83 (457)
T PRK10637          8 CQLRDRDCLLVGGGDV-AERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD   83 (457)
T ss_pred             EEcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH
Confidence            5789999999999886 7666778889999999985431 111                 24577899999999864

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=95.52  E-value=0.032  Score=48.60  Aligned_cols=38  Identities=21%  Similarity=0.257  Sum_probs=33.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++++|+++|.|+++-+|+.++..|.++|++|+++.++
T Consensus         4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~   41 (252)
T PRK08220          4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA   41 (252)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            34789999999998888999999999999998888654

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=95.52  E-value=0.28  Score=46.01  Aligned_cols=146  Identities=16%  Similarity=0.128  Sum_probs=93.2

Q ss_pred             HHHHHHHHcCCeEEEEEcCCC--------------CCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCC-----HHHHHhc
Q 024306           28 NKIKACEEVGIKSIVTEFADG--------------CTEDEVLNALSNYNQDSSINGILVQLPLPQHLD-----EGKILDA   88 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~--------------~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~-----~~~i~~~   88 (269)
                      +-..++.++|-++.++.-...              ...|.+.+.++-|+.-  +|+|.+-.|-.. .+     ....++.
T Consensus        55 SFe~A~~~LGg~~i~l~~~~ss~~~e~~~g~~~~~~kgEsl~Dtarvls~~--~D~iv~R~~~~g-~~~~~~~~~~~~~~  131 (335)
T PRK04523         55 SFELGAFQLGGHAVVLQPGKDAWPIEFELGAVMDGETEEHIREVARVLSRY--VDLIGVRAFPKF-VDWSKDRQDQVLNS  131 (335)
T ss_pred             HHHHHHHHcCCeEEEeCcccccchhhcccccccCCCCCcCHHHHHHHHHHh--CcEEEEeCCccc-cccccchhHHHHHH
Confidence            456688999999888754321              0236677888888773  888988876321 00     0122233


Q ss_pred             CCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCC-ccceEEEEcCC------cccHHHHHHHHHhCCC
Q 024306           89 VSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEI-MGKNAVVIGRS------NIVGLPTSLLLQRHHA  161 (269)
Q Consensus        89 i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l-~gk~v~ViG~g------g~vg~~~a~~L~~~ga  161 (269)
                      +....   .+-.+|.     +  .. +.||=+.+=+--++++-..+ +|++++|++.|      +.|.+.++.++...|+
T Consensus       132 ~a~~s---~vPVINa-----~--~~-~HPtQaLaDl~Ti~e~~g~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~  200 (335)
T PRK04523        132 FAKYS---TVPVINM-----E--TI-THPCQELAHALALQEHFGTTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGM  200 (335)
T ss_pred             HHHhC---CCCEEEC-----C--CC-CChHHHHHHHHHHHHHhCCccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCC
Confidence            32221   2334454     2  23 66998888444444433457 89999887643      2468899999999999


Q ss_pred             EEEEEeC-C-------------------------CCCHhhhcCCCCEEEecc
Q 024306          162 TVSIVHA-L-------------------------TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       162 ~Vti~~~-~-------------------------t~~l~~~~~~aDiVIsAt  187 (269)
                      +|++++. .                         +.++.+.+++||+|.+-.
T Consensus       201 ~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~  252 (335)
T PRK04523        201 DVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGADVVYAKS  252 (335)
T ss_pred             EEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEece
Confidence            9999987 2                         134567899999998644

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.50  E-value=0.018  Score=54.89  Aligned_cols=76  Identities=17%  Similarity=0.212  Sum_probs=54.6

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhC-CCEEEEEeCCC---------------C------CHh-hhcCCCCEEEeccCC--
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALT---------------K------NPE-QITSEADIVIAAAGV--  189 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t---------------~------~l~-~~~~~aDiVIsAtg~--  189 (269)
                      .-++|.|+|+.|.+|+.+.++|.++ +.+++.+.+..               .      ++. +.++++|+||.|+|.  
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~~  116 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGT  116 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHHH
Confidence            5569999999999999999999988 56887775431               0      011 124779999999984  


Q ss_pred             -CCcccCCCcCCCcEEEEeeecCC
Q 024306          190 -ANLVRGSWLKPGAVVLDVGTCPV  212 (269)
Q Consensus       190 -p~~i~~~~~~~g~vViDv~~~~~  212 (269)
                       .++++. + +.|..|||++....
T Consensus       117 s~~i~~~-~-~~g~~VIDlSs~fR  138 (381)
T PLN02968        117 TQEIIKA-L-PKDLKIVDLSADFR  138 (381)
T ss_pred             HHHHHHH-H-hCCCEEEEcCchhc
Confidence             223333 3 57899999996644

>PRK06182 short chain dehydrogenase; Validated

Probab=95.49  E-value=0.024  Score=50.37  Aligned_cols=35  Identities=29%  Similarity=0.139  Sum_probs=31.4

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|+++|.|+++-+|++++..|.++|++|+++.|+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~   36 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARR   36 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999998888999999999999999988765

>PLN02858 fructose-bisphosphate aldolase

Probab=95.48  E-value=0.023  Score=62.37  Aligned_cols=75  Identities=17%  Similarity=0.187  Sum_probs=59.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCCc-----ccC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL-----VRG  195 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~~-----i~~  195 (269)
                      +.++|-+||-|.+ |.++|..|.+.|.+|++.+++.              .+..+..++||+||+.++.+.-     +..
T Consensus         3 ~~~~IGfIGLG~M-G~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~   81 (1378)
T PLN02858          3 SAGVVGFVGLDSL-SFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGD   81 (1378)
T ss_pred             CCCeEEEEchhHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhch
Confidence            4578999999997 9999999999999999998863              3566788899999999885431     111


Q ss_pred             ----CCcCCCcEEEEeeec
Q 024306          196 ----SWLKPGAVVLDVGTC  210 (269)
Q Consensus       196 ----~~~~~g~vViDv~~~  210 (269)
                          ..+++|.++||++..
T Consensus        82 ~g~~~~l~~g~iivd~STi  100 (1378)
T PLN02858         82 EGAAKGLQKGAVILIRSTI  100 (1378)
T ss_pred             hhHHhcCCCcCEEEECCCC
Confidence                135788999998854

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=95.48  E-value=0.016  Score=51.33  Aligned_cols=39  Identities=21%  Similarity=0.217  Sum_probs=34.9

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..++++|+++|.|+++.+|+.++..|+++|++|.++.+.
T Consensus         5 ~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~   43 (265)
T PRK07097          5 LFSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDIN   43 (265)
T ss_pred             ccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            356899999999999999999999999999998888665

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=95.46  E-value=0.036  Score=51.67  Aligned_cols=71  Identities=21%  Similarity=0.271  Sum_probs=53.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC----------------------------CCCHhhhcCCCCEEEeccC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------------TKNPEQITSEADIVIAAAG  188 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------------t~~l~~~~~~aDiVIsAtg  188 (269)
                      ++|.|||+|.- |.++|..|++.|..|++-.|.                            +.|+.+.+++||+|+-++|
T Consensus         2 ~kI~ViGaGsw-GTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP   80 (329)
T COG0240           2 MKIAVIGAGSW-GTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP   80 (329)
T ss_pred             ceEEEEcCChH-HHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence            57999999886 999999999999888887542                            3578899999999999999


Q ss_pred             CCC---ccc--CCCcCCCcEEEEee
Q 024306          189 VAN---LVR--GSWLKPGAVVLDVG  208 (269)
Q Consensus       189 ~p~---~i~--~~~~~~g~vViDv~  208 (269)
                      ...   .++  ...+++++.++-+.
T Consensus        81 s~~~r~v~~~l~~~l~~~~~iv~~s  105 (329)
T COG0240          81 SQALREVLRQLKPLLLKDAIIVSAT  105 (329)
T ss_pred             hHHHHHHHHHHhhhccCCCeEEEEe
Confidence            632   111  13456666666554

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=95.44  E-value=0.034  Score=50.71  Aligned_cols=86  Identities=14%  Similarity=-0.017  Sum_probs=55.1

Q ss_pred             HHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------CCHhhhc-----C
Q 024306          124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------KNPEQIT-----S  178 (269)
Q Consensus       124 ~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------~~l~~~~-----~  178 (269)
                      ...+.+...--+|.+|+|.|++|.+|..+++++..+|++|+.+.+..                    .+..+.+     +
T Consensus       127 ~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~  206 (325)
T TIGR02825       127 YFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPD  206 (325)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCC
Confidence            33343333334789999999877779999999999999877654321                    1121111     2


Q ss_pred             CCCEEEeccCCCCc-ccCCCcCCCcEEEEeee
Q 024306          179 EADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  209 (269)
Q Consensus       179 ~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~  209 (269)
                      ..|++++++|.+.+ -.-++++++..++.++.
T Consensus       207 gvdvv~d~~G~~~~~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       207 GYDCYFDNVGGEFSNTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             CeEEEEECCCHHHHHHHHHHhCcCcEEEEecc
Confidence            46888888886432 12235677777777774

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.43  E-value=0.028  Score=49.38  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=32.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++||+++|.|+++-+|+.+++.|.++|++|.++.++
T Consensus         4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~   40 (255)
T PRK06463          4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNS   40 (255)
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999998889999999999999998877543

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=95.43  E-value=0.04  Score=50.02  Aligned_cols=35  Identities=26%  Similarity=0.116  Sum_probs=30.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +||+|+|.|++|.+|+.++..|.++|.+|+++.+.
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~   37 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRD   37 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcC
Confidence            47899999998889999999999999998876543

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.43  E-value=0.048  Score=51.32  Aligned_cols=113  Identities=19%  Similarity=0.195  Sum_probs=68.0

Q ss_pred             ccceEEEEcCCcccHHHHHHHHH-hCCCE---EEEEeCCC----------CCH------hhhcCCCCEEEeccCCCC--c
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQ-RHHAT---VSIVHALT----------KNP------EQITSEADIVIAAAGVAN--L  192 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~-~~ga~---Vti~~~~t----------~~l------~~~~~~aDiVIsAtg~p~--~  192 (269)
                      ++.+|.|||+.|.||+-+.++|. +....   +..+.+..          .++      .+.+++.|+++.|+|..-  -
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~~~~Divf~a~~~~~s~~   83 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQ   83 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHhcCCCEEEECCChHHHHH
Confidence            34689999999999999999999 46655   55554331          000      133478999999997421  1


Q ss_pred             ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHH
Q 024306          193 VRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAML  254 (269)
Q Consensus       193 i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mL  254 (269)
                      +-+...+.|+.|||.+.....++.-+   -.+-.+..+.+++..+ +...||   -.|++|+
T Consensus        84 ~~~~~~~~G~~VID~Ss~fR~~~~vp---lvvPEvN~e~i~~~~~-iIanPn---C~tt~~~  138 (347)
T PRK06728         84 FVNQAVSSGAIVIDNTSEYRMAHDVP---LVVPEVNAHTLKEHKG-IIAVPN---CSALQMV  138 (347)
T ss_pred             HHHHHHHCCCEEEECchhhcCCCCCC---eEeCCcCHHHHhccCC-EEECCC---CHHHHHH
Confidence            22334467999999996654343221   1344444444444223 444665   3355555

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.42  E-value=0.024  Score=51.54  Aligned_cols=32  Identities=19%  Similarity=0.129  Sum_probs=29.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|.|||+|.+ |.++|..|+..|.+|++.+++
T Consensus         5 ~kI~vIGaG~m-G~~iA~~la~~G~~V~l~d~~   36 (292)
T PRK07530          5 KKVGVIGAGQM-GNGIAHVCALAGYDVLLNDVS   36 (292)
T ss_pred             CEEEEECCcHH-HHHHHHHHHHCCCeEEEEeCC
Confidence            68999999887 999999999999999999764

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.42  E-value=0.025  Score=49.81  Aligned_cols=38  Identities=24%  Similarity=0.265  Sum_probs=34.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++.+|+.+++.|+++|++|.++.+.
T Consensus        11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~   48 (258)
T PRK06935         11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG   48 (258)
T ss_pred             ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999999999999999999998888654

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=95.42  E-value=0.038  Score=49.66  Aligned_cols=85  Identities=18%  Similarity=0.246  Sum_probs=57.4

Q ss_pred             HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCCCC-----------------CH----hhhc--C
Q 024306          123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALTK-----------------NP----EQIT--S  178 (269)
Q Consensus       123 ~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t~-----------------~l----~~~~--~  178 (269)
                      +...+++... ..|++|+|+|+|+ +|..+++.+..+|++ |+++.+...                 +.    .+..  +
T Consensus       109 a~~al~~~~~-~~g~~VlV~G~G~-vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~  186 (280)
T TIGR03366       109 VMAALEAAGD-LKGRRVLVVGAGM-LGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGR  186 (280)
T ss_pred             HHHHHHhccC-CCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCC
Confidence            3444544443 3899999999976 599999999999986 777643310                 11    1111  3


Q ss_pred             CCCEEEeccCCCCcc--cCCCcCCCcEEEEeee
Q 024306          179 EADIVIAAAGVANLV--RGSWLKPGAVVLDVGT  209 (269)
Q Consensus       179 ~aDiVIsAtg~p~~i--~~~~~~~g~vViDv~~  209 (269)
                      .+|++|.++|.+..+  --+.++++..++-++.
T Consensus       187 g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       187 GVDVALEFSGATAAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             CCCEEEECCCChHHHHHHHHHhcCCCEEEEecc
Confidence            589999999876532  2346788888888885

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.42  E-value=0.046  Score=49.88  Aligned_cols=76  Identities=12%  Similarity=0.186  Sum_probs=52.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCCCCCHh-----------h-hcCCCCEEEeccCCCCccc--CCCc
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALTKNPE-----------Q-ITSEADIVIAAAGVANLVR--GSWL  198 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t~~l~-----------~-~~~~aDiVIsAtg~p~~i~--~~~~  198 (269)
                      .+|++++|+|+|+ ||..+++++..+|++ |.++.+....+.           + .-..+|+||.++|.+..+.  -+.+
T Consensus       143 ~~~~~vlV~G~G~-vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~~~~~~~~~~l  221 (308)
T TIGR01202       143 VKVLPDLIVGHGT-LGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDPSLIDTLVRRL  221 (308)
T ss_pred             cCCCcEEEECCCH-HHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCHHHHHHHHHhh
Confidence            4688999999877 499999999999997 545543311110           0 1135799999999865432  3567


Q ss_pred             CCCcEEEEeeec
Q 024306          199 KPGAVVLDVGTC  210 (269)
Q Consensus       199 ~~g~vViDv~~~  210 (269)
                      +++-.++-+|..
T Consensus       222 ~~~G~iv~~G~~  233 (308)
T TIGR01202       222 AKGGEIVLAGFY  233 (308)
T ss_pred             hcCcEEEEEeec
Confidence            887777777754

>PRK08703 short chain dehydrogenase; Provisional

Probab=95.40  E-value=0.026  Score=49.06  Aligned_cols=38  Identities=24%  Similarity=0.203  Sum_probs=34.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +++||+++|.|+++.+|+.+++.|+++|++|.++.|+.
T Consensus         3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~   40 (239)
T PRK08703          3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ   40 (239)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence            47899999999999899999999999999999887764

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=95.39  E-value=0.037  Score=50.48  Aligned_cols=34  Identities=24%  Similarity=0.110  Sum_probs=30.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      .||+++|.|++|.+|+.++..|.++|++|+++.+
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r   37 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVR   37 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEc
Confidence            4799999999888999999999999999877643

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=95.38  E-value=0.057  Score=51.61  Aligned_cols=95  Identities=20%  Similarity=0.296  Sum_probs=63.6

Q ss_pred             cCCHHHHHHHHHHh---CCCCccceEEEEcCC----------------cccHHHHHHHHHhCCCEEEEEeCCC-------
Q 024306          117 PCTPKGCIELLIRS---GVEIMGKNAVVIGRS----------------NIVGLPTSLLLQRHHATVSIVHALT-------  170 (269)
Q Consensus       117 p~t~~g~~~~l~~~---~~~l~gk~v~ViG~g----------------g~vg~~~a~~L~~~ga~Vti~~~~t-------  170 (269)
                      +++++.++..+.+.   +-+++||+++|.|.+                |-+|.++|..|..+||+|+++++..       
T Consensus       163 ~~~~~~i~~~v~~~~~~~~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~~~~  242 (390)
T TIGR00521       163 LAEPETIVKAAEREFSPKEDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLTPPG  242 (390)
T ss_pred             CCCHHHHHHHHHHHHhhccccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCCCCC
Confidence            77788877777643   246899999999873                4349999999999999999987531       


Q ss_pred             ---------CCH-h----hhcCCCCEEEeccCCCCcc----cCCCcCC--CcEEEEeeecC
Q 024306          171 ---------KNP-E----QITSEADIVIAAAGVANLV----RGSWLKP--GAVVLDVGTCP  211 (269)
Q Consensus       171 ---------~~l-~----~~~~~aDiVIsAtg~p~~i----~~~~~~~--g~vViDv~~~~  211 (269)
                               .++ .    +...+.|++|.+.+...+-    ...-+++  ..+.+.+.-+|
T Consensus       243 ~~~~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~p  303 (390)
T TIGR00521       243 VKSIKVSTAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNP  303 (390)
T ss_pred             cEEEEeccHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCc
Confidence                     122 1    2335689999998865442    1223443  23445555554

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PRK06179 short chain dehydrogenase; Provisional

Probab=95.37  E-value=0.036  Score=49.04  Aligned_cols=35  Identities=29%  Similarity=0.131  Sum_probs=31.6

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++++|.|+++.+|+.+++.|+++|++|+++.|+
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~   37 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRN   37 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46789999999999999999999999999988765

>PLN02427 UDP-apiose/xylose synthase

Probab=95.36  E-value=0.035  Score=52.21  Aligned_cols=58  Identities=21%  Similarity=0.221  Sum_probs=45.1

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhC-CCEEEEEeCCCC----------------------------CHhhhcCCCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALTK----------------------------NPEQITSEAD  181 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t~----------------------------~l~~~~~~aD  181 (269)
                      +..++.++|+|.|+.|.+|+.++..|.++ |.+|+.+.+...                            .+.+.++++|
T Consensus         9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d   88 (386)
T PLN02427          9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD   88 (386)
T ss_pred             CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence            45567789999999999999999999998 488887764321                            1335567899


Q ss_pred             EEEeccC
Q 024306          182 IVIAAAG  188 (269)
Q Consensus       182 iVIsAtg  188 (269)
                      +||...+
T Consensus        89 ~ViHlAa   95 (386)
T PLN02427         89 LTINLAA   95 (386)
T ss_pred             EEEEccc
Confidence            9997776

>PRK09186 flagellin modification protein A; Provisional

Probab=95.35  E-value=0.02  Score=50.11  Aligned_cols=36  Identities=14%  Similarity=0.214  Sum_probs=32.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++||+++|.|+++-+|+.++..|.++|++|.++.|+
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~   37 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADID   37 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecC
Confidence            578999999998888999999999999998888664

>PRK05854 short chain dehydrogenase; Provisional

Probab=95.35  E-value=0.016  Score=53.13  Aligned_cols=38  Identities=32%  Similarity=0.295  Sum_probs=34.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+.+++.|+++|++|.++.|+
T Consensus        10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~   47 (313)
T PRK05854         10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRN   47 (313)
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            46789999999998888999999999999999988765

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.34  E-value=0.025  Score=52.44  Aligned_cols=65  Identities=20%  Similarity=0.273  Sum_probs=50.3

Q ss_pred             HHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhhcC--CCCEEEecc
Q 024306          121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITS--EADIVIAAA  187 (269)
Q Consensus       121 ~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~--~aDiVIsAt  187 (269)
                      --+.+.|++++.. .|+++.|+|+|| +|.-..+....+|.+|+++.+..+..+++++  .||..|.++
T Consensus       168 ITvYspLk~~g~~-pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~  234 (360)
T KOG0023|consen  168 ITVYSPLKRSGLG-PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDST  234 (360)
T ss_pred             eEEeehhHHcCCC-CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEec
Confidence            3355678999998 999999999999 5999999999999999999877544445444  355555444

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=95.34  E-value=0.031  Score=51.92  Aligned_cols=59  Identities=20%  Similarity=0.111  Sum_probs=45.5

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------------CHhhhcCCCCEEE
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------------NPEQITSEADIVI  184 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------------~l~~~~~~aDiVI  184 (269)
                      +.+-.+++|+|.|++|.+|+.++..|.++|++|+++.+...                          .+.+.+++.|.||
T Consensus         5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   84 (353)
T PLN02896          5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVF   84 (353)
T ss_pred             ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence            34567899999999999999999999999999887754311                          1234456789999


Q ss_pred             eccCC
Q 024306          185 AAAGV  189 (269)
Q Consensus       185 sAtg~  189 (269)
                      ...+.
T Consensus        85 h~A~~   89 (353)
T PLN02896         85 HVAAS   89 (353)
T ss_pred             ECCcc
Confidence            77764

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.33  E-value=0.04  Score=46.64  Aligned_cols=30  Identities=20%  Similarity=0.369  Sum_probs=26.3

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC-EEEEEeC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  168 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  168 (269)
                      +|+|+|+|+. |..+++.|++.|. ++++++.
T Consensus         1 ~VlViG~Ggl-Gs~ia~~La~~Gvg~i~lvD~   31 (174)
T cd01487           1 KVGIAGAGGL-GSNIAVLLARSGVGNLKLVDF   31 (174)
T ss_pred             CEEEECcCHH-HHHHHHHHHHcCCCeEEEEeC
Confidence            5899999997 9999999999997 5988853

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07060 short chain dehydrogenase; Provisional

Probab=95.32  E-value=0.024  Score=49.13  Aligned_cols=38  Identities=24%  Similarity=0.312  Sum_probs=34.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++++++++|.|+++.+|+.+++.|+++|++|+++.|+
T Consensus         5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~   42 (245)
T PRK07060          5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARN   42 (245)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999998878999999999999999988775

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.31  E-value=0.023  Score=50.72  Aligned_cols=70  Identities=20%  Similarity=0.246  Sum_probs=49.2

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCE---EEEEeCCC----------------CCHhhhcCCCCEEEeccCCCC---cccC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHAT---VSIVHALT----------------KNPEQITSEADIVIAAAGVAN---LVRG  195 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~---Vti~~~~t----------------~~l~~~~~~aDiVIsAtg~p~---~i~~  195 (269)
                      ++.+||.|.+ |.+++..|.+.|..   +.+++|+.                .+..+.++++|+||.+++...   .+..
T Consensus         2 ~IgiIG~G~m-G~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~   80 (258)
T PRK06476          2 KIGFIGTGAI-TEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRA   80 (258)
T ss_pred             eEEEECcCHH-HHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence            5899999887 99999999988743   56776642                234456788999999998321   2222


Q ss_pred             CCcCCCcEEEEee
Q 024306          196 SWLKPGAVVLDVG  208 (269)
Q Consensus       196 ~~~~~g~vViDv~  208 (269)
                      -.++++.+||++.
T Consensus        81 l~~~~~~~vis~~   93 (258)
T PRK06476         81 LRFRPGQTVISVI   93 (258)
T ss_pred             hccCCCCEEEEEC
Confidence            2356777887766

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=95.30  E-value=0.029  Score=49.35  Aligned_cols=38  Identities=29%  Similarity=0.334  Sum_probs=34.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++.+|..+++.|.++|++|+++.|.
T Consensus         8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~   45 (259)
T PRK08213          8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARK   45 (259)
T ss_pred             hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            45789999999998889999999999999999988765

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.30  E-value=0.067  Score=52.00  Aligned_cols=124  Identities=22%  Similarity=0.264  Sum_probs=66.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH--hhhcCCCCEEEeccCCCCcccCCCcCC-CcEEEEeeec
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP--EQITSEADIVIAAAGVANLVRGSWLKP-GAVVLDVGTC  210 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l--~~~~~~aDiVIsAtg~p~~i~~~~~~~-g~vViDv~~~  210 (269)
                      +.+|+|+|+|-|.. |+++++.|.++|+.|++++.+....  ........-|=...|. +..  +++.. ..+|.-=|++
T Consensus         5 ~~~~kv~V~GLG~s-G~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~-~~~--~~~~~~d~vV~SPGi~   80 (448)
T COG0771           5 FQGKKVLVLGLGKS-GLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGS-HDD--EDLAEFDLVVKSPGIP   80 (448)
T ss_pred             ccCCEEEEEecccc-cHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCc-cch--hccccCCEEEECCCCC
Confidence            45899999999999 9999999999999999997553220  0000000000011111 001  12211 2233332333


Q ss_pred             CCCCC----CCCCCceeecccchHHHhh-HcceecccCCcccHHHHHHHHHHHHHHHH
Q 024306          211 PVDDP----SCEYGYRLMGDVCYEEAMR-LASVITPVPGGVGPMTVAMLLSNTLDSAK  263 (269)
Q Consensus       211 ~~~~~----~~~~~~~l~GDvd~~~~~~-~~~~~tpvpgGvGp~T~~mLl~n~v~a~~  263 (269)
                      +. +|    -...|.++.||++.-.-.. .+- +.-|-|==|.=|+.-|+.+++++.-
T Consensus        81 ~~-~p~v~~A~~~gi~i~~dieL~~r~~~~~p-~vaITGTNGKTTTTsli~~~l~~~G  136 (448)
T COG0771          81 PT-HPLVEAAKAAGIEIIGDIELFYRLSGEAP-IVAITGTNGKTTTTSLIAHLLKAAG  136 (448)
T ss_pred             CC-CHHHHHHHHcCCcEEeHHHHHHHhcCCCC-EEEEECCCchHHHHHHHHHHHHhcC
Confidence            22 11    0012236888887432110 111 2224455688899999999988753

>PRK07478 short chain dehydrogenase; Provisional

Probab=95.30  E-value=0.019  Score=50.38  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=33.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++|+++|.|+++-+|+.+++.|+++|++|.++.|+
T Consensus         3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~   39 (254)
T PRK07478          3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARR   39 (254)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            3678999999998888999999999999999888765

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.28  E-value=0.039  Score=48.56  Aligned_cols=54  Identities=11%  Similarity=0.095  Sum_probs=41.2

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC---CE-EEEEeCCC----------------CCHhhhcCCCCEEEeccCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHH---AT-VSIVHALT----------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~g---a~-Vti~~~~t----------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      +..+|.|||+|.+ |++++..|.+.+   .+ +++++++.                .+..+.++++|+||.+++.
T Consensus         3 ~~~kI~iIG~G~m-g~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~   76 (245)
T PRK07634          3 KKHRILFIGAGRM-AEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP   76 (245)
T ss_pred             CCCeEEEECcCHH-HHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH
Confidence            4578999999987 999999998776   23 66676531                2345667889999999984

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=95.28  E-value=0.037  Score=54.13  Aligned_cols=73  Identities=16%  Similarity=0.244  Sum_probs=52.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------CHhhhcC---CCCEEEeccCCCC--
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQITS---EADIVIAAAGVAN--  191 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~~~~~---~aDiVIsAtg~p~--  191 (269)
                      .+|.|||.|.+ |.++|..|+++|.+|++.+|+..                    ++++.+.   ++|+||..+..+.  
T Consensus         2 ~~IgvIGLG~M-G~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v   80 (470)
T PTZ00142          2 SDIGLIGLAVM-GQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV   80 (470)
T ss_pred             CEEEEEeEhHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence            36899999987 99999999999999999988631                    2333343   4787776655332  


Q ss_pred             --ccc--CCCcCCCcEEEEeeec
Q 024306          192 --LVR--GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       192 --~i~--~~~~~~g~vViDv~~~  210 (269)
                        .+.  ...+++|.+|||.+..
T Consensus        81 ~~vi~~l~~~L~~g~iIID~gn~  103 (470)
T PTZ00142         81 DETIDNLLPLLEKGDIIIDGGNE  103 (470)
T ss_pred             HHHHHHHHhhCCCCCEEEECCCC
Confidence              121  1246788999998854

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=95.26  E-value=0.048  Score=50.79  Aligned_cols=55  Identities=25%  Similarity=0.182  Sum_probs=45.2

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------------CHhhhcCCCCEEE-
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------NPEQITSEADIVI-  184 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------------~l~~~~~~aDiVI-  184 (269)
                      .+++|+|.|++|.+|.-+++.|+.+|++|.-.-|...                             .+.+.+..+|.|+ 
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH   84 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH   84 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence            6789999999999999999999999999988866532                             2346788899999 


Q ss_pred             eccCC
Q 024306          185 AAAGV  189 (269)
Q Consensus       185 sAtg~  189 (269)
                      +|.+.
T Consensus        85 ~Asp~   89 (327)
T KOG1502|consen   85 TASPV   89 (327)
T ss_pred             eCccC
Confidence            55443

>PRK07856 short chain dehydrogenase; Provisional

Probab=95.26  E-value=0.033  Score=48.87  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=33.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~   39 (252)
T PRK07856          3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR   39 (252)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999889999999999999998888664

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=95.26  E-value=0.053  Score=50.56  Aligned_cols=87  Identities=17%  Similarity=0.192  Sum_probs=57.5

Q ss_pred             HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC---------------------HhhhcCCCC
Q 024306          123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------------PEQITSEAD  181 (269)
Q Consensus       123 ~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---------------------l~~~~~~aD  181 (269)
                      +...+...+..-.|.+++|.|.|+ +|..+++++..+|+.|+++.+....                     +.+.....|
T Consensus       168 a~~al~~~~~~~~g~~vlV~G~G~-vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D  246 (357)
T PLN02514        168 VYSPLSHFGLKQSGLRGGILGLGG-VGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLD  246 (357)
T ss_pred             HHHHHHHcccCCCCCeEEEEcccH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCc
Confidence            344454444445799999999866 5999999999999987666433211                     112233579


Q ss_pred             EEEeccCCCCcc--cCCCcCCCcEEEEeeec
Q 024306          182 IVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       182 iVIsAtg~p~~i--~~~~~~~g~vViDv~~~  210 (269)
                      ++|.++|.+..+  --+.++++..++.+|..
T Consensus       247 ~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~  277 (357)
T PLN02514        247 YIIDTVPVFHPLEPYLSLLKLDGKLILMGVI  277 (357)
T ss_pred             EEEECCCchHHHHHHHHHhccCCEEEEECCC
Confidence            999998864322  22457787778888854

>PRK05872 short chain dehydrogenase; Provisional

Probab=95.25  E-value=0.019  Score=52.10  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=34.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+.+++.|+++|++|.++.++
T Consensus         5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~   42 (296)
T PRK05872          5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLE   42 (296)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999998888999999999999999888765

>PRK09242 tropinone reductase; Provisional

Probab=95.25  E-value=0.017  Score=50.78  Aligned_cols=38  Identities=26%  Similarity=0.253  Sum_probs=33.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..++||+++|.|+++-+|+.++..|.++|++|+++.|+
T Consensus         5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~   42 (257)
T PRK09242          5 WRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARD   42 (257)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            35789999999998888999999999999999888665

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=95.25  E-value=0.035  Score=54.60  Aligned_cols=72  Identities=18%  Similarity=0.334  Sum_probs=54.3

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcC---CCCEEEeccCCCCc-
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITS---EADIVIAAAGVANL-  192 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~---~aDiVIsAtg~p~~-  192 (269)
                      +|-+||-|.+ |+++|..|++.|.+|+++||+..                     ++.+.+.   ++|+||..++.+.. 
T Consensus         8 ~IG~IGLG~M-G~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV   86 (493)
T PLN02350          8 RIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV   86 (493)
T ss_pred             CEEEEeeHHH-HHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence            5899999887 99999999999999999998631                     1223333   49999988875442 


Q ss_pred             ---cc--CCCcCCCcEEEEeeec
Q 024306          193 ---VR--GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       193 ---i~--~~~~~~g~vViDv~~~  210 (269)
                         +.  ...+++|.++||.+..
T Consensus        87 ~~Vi~gl~~~l~~G~iiID~sT~  109 (493)
T PLN02350         87 DQTIKALSEYMEPGDCIIDGGNE  109 (493)
T ss_pred             HHHHHHHHhhcCCCCEEEECCCC
Confidence               11  1236789999999865

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=95.24  E-value=0.047  Score=43.55  Aligned_cols=50  Identities=22%  Similarity=0.267  Sum_probs=35.5

Q ss_pred             eEEEEcCCcccHHHHHHHHHh-CCCE-EEEEeCCC----------------------CCHhhhcCCCCEEEecc
Q 024306          138 NAVVIGRSNIVGLPTSLLLQR-HHAT-VSIVHALT----------------------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~-~ga~-Vti~~~~t----------------------~~l~~~~~~aDiVIsAt  187 (269)
                      +|.|+|++|-+|+.++..+.+ .+.+ +-.+.+..                      .++.+.+.++|++|..|
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT   75 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT   75 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC
Confidence            689999944459999999988 5666 44555554                      45667777788888777

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.22  E-value=0.019  Score=50.18  Aligned_cols=37  Identities=30%  Similarity=0.366  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++|+++|.|+++-+|+.+++.|.++|++|.++.++
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~   41 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRK   41 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999888765

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=95.21  E-value=0.029  Score=49.54  Aligned_cols=37  Identities=16%  Similarity=0.251  Sum_probs=33.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      .+++||+++|.|+++-+|++++..|+++|++|+++.+
T Consensus         4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~   40 (260)
T PRK08416          4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYN   40 (260)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence            3578999999999888999999999999999988754

>PRK07680 late competence protein ComER; Validated

Probab=95.20  E-value=0.028  Score=50.63  Aligned_cols=71  Identities=18%  Similarity=0.288  Sum_probs=50.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC----EEEEEeCCC----------------CCHhhhcCCCCEEEeccCCCC---ccc
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHA----TVSIVHALT----------------KNPEQITSEADIVIAAAGVAN---LVR  194 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga----~Vti~~~~t----------------~~l~~~~~~aDiVIsAtg~p~---~i~  194 (269)
                      ++.|||+|.+ |.+++..|.+.|.    +|++++|+.                .+..+.+.++|+||.++....   .+.
T Consensus         2 ~I~iIG~G~m-G~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~   80 (273)
T PRK07680          2 NIGFIGTGNM-GTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLLQ   80 (273)
T ss_pred             EEEEECccHH-HHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHHH
Confidence            5899999886 9999999998883    689998752                233455788999999986221   121


Q ss_pred             --CCCcCCCcEEEEeee
Q 024306          195 --GSWLKPGAVVLDVGT  209 (269)
Q Consensus       195 --~~~~~~g~vViDv~~  209 (269)
                        ...++++.+|+++.-
T Consensus        81 ~l~~~l~~~~~iis~~a   97 (273)
T PRK07680         81 KLAPHLTDEHCLVSITS   97 (273)
T ss_pred             HHHhhcCCCCEEEEECC
Confidence              124566788888873

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=95.20  E-value=0.029  Score=50.09  Aligned_cols=52  Identities=15%  Similarity=0.172  Sum_probs=41.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------CHhhhcCCC--CEEEeccCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------NPEQITSEA--DIVIAAAGV  189 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------~l~~~~~~a--DiVIsAtg~  189 (269)
                      +|+|+|++|.+|+.++..|.++|.+|+++.|..-      ++.+.++.+  |+||...+.
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~d~~~~~~~~~~~~~~~~d~vi~~a~~   60 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQLDLTDPEALERLLRAIRPDAVVNTAAY   60 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCcccCCCCHHHHHHHHHhCCCCEEEECCcc
Confidence            5899999888999999999999999998877532      244556655  999988774

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK06196 oxidoreductase; Provisional

Probab=95.20  E-value=0.022  Score=52.11  Aligned_cols=39  Identities=31%  Similarity=0.381  Sum_probs=35.2

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..+++||+++|.|+++-+|+.+++.|+++|++|+++.|+
T Consensus        21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~   59 (315)
T PRK06196         21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARR   59 (315)
T ss_pred             CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            467899999999998888999999999999999988765

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.20  E-value=0.023  Score=49.76  Aligned_cols=37  Identities=35%  Similarity=0.423  Sum_probs=33.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++.+|+.++..|+++|++|.++.|.
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~   40 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLN   40 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCC
Confidence            3679999999998889999999999999998888664

>PRK08264 short chain dehydrogenase; Validated

Probab=95.19  E-value=0.03  Score=48.45  Aligned_cols=38  Identities=24%  Similarity=0.173  Sum_probs=33.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT  170 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t  170 (269)
                      ++.+++++|+|+++.+|+.+++.|.++|+ +|+++.|..
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~   41 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP   41 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence            36789999999988899999999999999 899887753

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.18  E-value=0.049  Score=53.10  Aligned_cols=122  Identities=18%  Similarity=0.248  Sum_probs=68.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-CHhh--hcCCCCEEEeccCCCCcccCCCcC-CCcEEEEeee
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-NPEQ--ITSEADIVIAAAGVANLVRGSWLK-PGAVVLDVGT  209 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-~l~~--~~~~aDiVIsAtg~p~~i~~~~~~-~g~vViDv~~  209 (269)
                      ++||+|+|+|.|.. |+++++.|.++|+.|++...... ...+  .+++ ++..--.+.+    ++.+. ...+|.--|+
T Consensus         6 ~~~~~v~v~G~G~s-G~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~----~~~~~~~d~vV~SpgI   79 (468)
T PRK04690          6 LEGRRVALWGWGRE-GRAAYRALRAHLPAQALTLFCNAVEAREVGALAD-AALLVETEAS----AQRLAAFDVVVKSPGI   79 (468)
T ss_pred             cCCCEEEEEccchh-hHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhh-cCEEEeCCCC----hHHccCCCEEEECCCC
Confidence            46899999999998 99999999999999999875431 1111  2322 2222111111    11121 2334444444


Q ss_pred             cCCCCCC----CCCCceeecccch--HHHhhH---cceecccCCcccHHHHHHHHHHHHHHH
Q 024306          210 CPVDDPS----CEYGYRLMGDVCY--EEAMRL---ASVITPVPGGVGPMTVAMLLSNTLDSA  262 (269)
Q Consensus       210 ~~~~~~~----~~~~~~l~GDvd~--~~~~~~---~~~~tpvpgGvGp~T~~mLl~n~v~a~  262 (269)
                      ++.. |.    ...+-++++++++  ....+.   ...+.-|-|--|.=|+.-|+.++++..
T Consensus        80 ~~~~-p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~  140 (468)
T PRK04690         80 SPYR-PEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAA  140 (468)
T ss_pred             CCCC-HHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhc
Confidence            4321 10    0012257777775  111110   012344668889999999999888654

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.17  E-value=0.031  Score=49.24  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=33.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+++++.|+++|++|.++.+.
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~   41 (251)
T PRK12481          5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVA   41 (251)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCc
Confidence            5789999999999999999999999999999887653

>PRK06125 short chain dehydrogenase; Provisional

Probab=95.15  E-value=0.028  Score=49.50  Aligned_cols=37  Identities=16%  Similarity=0.279  Sum_probs=33.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus         4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~   40 (259)
T PRK06125          4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARD   40 (259)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            4689999999998888999999999999999988765

>cd08293 PTGR2 Prostaglandin reductase

Probab=95.15  E-value=0.055  Score=49.60  Aligned_cols=74  Identities=14%  Similarity=0.081  Sum_probs=49.7

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------CCHhhhc-----CCCCEEEeccCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------KNPEQIT-----SEADIVIAAAGV  189 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------~~l~~~~-----~~aDiVIsAtg~  189 (269)
                      |.+|+|.|++|.+|..+++++..+|+ .|+.+.++.                    .++.+.+     +..|++++++|.
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~  234 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG  234 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence            38999999966679999999999998 677764431                    1121111     247888888886


Q ss_pred             CCc-ccCCCcCCCcEEEEeee
Q 024306          190 ANL-VRGSWLKPGAVVLDVGT  209 (269)
Q Consensus       190 p~~-i~~~~~~~g~vViDv~~  209 (269)
                      +.. -.-+.++++..++.+|.
T Consensus       235 ~~~~~~~~~l~~~G~iv~~G~  255 (345)
T cd08293         235 EISDTVISQMNENSHIILCGQ  255 (345)
T ss_pred             HHHHHHHHHhccCCEEEEEee
Confidence            432 11235677777777773

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK07411 hypothetical protein; Validated

Probab=95.14  E-value=0.032  Score=53.24  Aligned_cols=34  Identities=24%  Similarity=0.420  Sum_probs=30.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEe
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH  167 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~  167 (269)
                      .++.++|+|+|.||. |-+++..|+..|. ++++++
T Consensus        35 ~L~~~~VlivG~GGl-G~~va~~La~~Gvg~l~lvD   69 (390)
T PRK07411         35 RLKAASVLCIGTGGL-GSPLLLYLAAAGIGRIGIVD   69 (390)
T ss_pred             HHhcCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEC
Confidence            357889999999996 9999999999997 688884

>PRK09291 short chain dehydrogenase; Provisional

Probab=95.13  E-value=0.035  Score=48.55  Aligned_cols=34  Identities=21%  Similarity=0.225  Sum_probs=30.6

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +|+++|.|++|-+|+.+++.|+++|++|+++.|.
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~   35 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQI   35 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999989999999999999999887664

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.12  E-value=0.032  Score=53.26  Aligned_cols=33  Identities=33%  Similarity=0.513  Sum_probs=29.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEe
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH  167 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~  167 (269)
                      ++.++|+|+|.||. |..++..|+..|. ++++++
T Consensus        40 L~~~~VlviG~GGl-Gs~va~~La~~Gvg~i~lvD   73 (392)
T PRK07878         40 LKNARVLVIGAGGL-GSPTLLYLAAAGVGTLGIVE   73 (392)
T ss_pred             HhcCCEEEECCCHH-HHHHHHHHHHcCCCeEEEEC
Confidence            57889999999996 9999999999996 688884

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=95.11  E-value=0.039  Score=51.91  Aligned_cols=54  Identities=11%  Similarity=0.055  Sum_probs=42.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------C------HhhhcCCCCEEEeccC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------N------PEQITSEADIVIAAAG  188 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~------l~~~~~~aDiVIsAtg  188 (269)
                      ++++|+|.|+.|.+|+.++..|.++|.+|+.+.|...               +      +...++++|+||...+
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa   94 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAA   94 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence            6799999999999999999999999999988865311               1      1234567899997775

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=95.11  E-value=0.036  Score=48.89  Aligned_cols=37  Identities=24%  Similarity=0.308  Sum_probs=33.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++|+++|+|+++.+|+.+++.|.++|+.|.++.+.
T Consensus         4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~   40 (261)
T PRK08936          4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRS   40 (261)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999998887653

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.10  E-value=0.043  Score=50.79  Aligned_cols=71  Identities=23%  Similarity=0.280  Sum_probs=51.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------------CHhhhcCCCCEEEecc
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------NPEQITSEADIVIAAA  187 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------------~l~~~~~~aDiVIsAt  187 (269)
                      .+|.|||+|.+ |.+++..|++.|.+|+++.|...                             ...+.++.+|+||.++
T Consensus         3 mkI~IiG~G~m-G~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~v   81 (341)
T PRK08229          3 ARICVLGAGSI-GCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTV   81 (341)
T ss_pred             ceEEEECCCHH-HHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEe
Confidence            46999999886 99999999999999999876410                             0113457899999998


Q ss_pred             CCCCc---cc--CCCcCCCcEEEEee
Q 024306          188 GVANL---VR--GSWLKPGAVVLDVG  208 (269)
Q Consensus       188 g~p~~---i~--~~~~~~g~vViDv~  208 (269)
                      ..+..   +.  ...++++++|+++.
T Consensus        82 k~~~~~~~~~~l~~~~~~~~iii~~~  107 (341)
T PRK08229         82 KSAATADAAAALAGHARPGAVVVSFQ  107 (341)
T ss_pred             cCcchHHHHHHHHhhCCCCCEEEEeC
Confidence            86442   11  11356778888873

>PRK05876 short chain dehydrogenase; Provisional

Probab=95.09  E-value=0.022  Score=51.20  Aligned_cols=37  Identities=27%  Similarity=0.344  Sum_probs=33.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|++++..|+++|++|.++.+.
T Consensus         3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~   39 (275)
T PRK05876          3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVD   39 (275)
T ss_pred             CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            3689999999999889999999999999999888654

>PRK07774 short chain dehydrogenase; Provisional

Probab=95.09  E-value=0.037  Score=48.19  Aligned_cols=37  Identities=24%  Similarity=0.254  Sum_probs=33.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++|+++|.|+++-+|+.+++.|+++|++|.+..|.
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~   39 (250)
T PRK07774          3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADIN   39 (250)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4688999999998888999999999999999988775

>PRK07814 short chain dehydrogenase; Provisional

Probab=95.09  E-value=0.03  Score=49.57  Aligned_cols=37  Identities=24%  Similarity=0.239  Sum_probs=33.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++++++|.|+++.+|+.++..|.++|++|.++.|+
T Consensus         7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~   43 (263)
T PRK07814          7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAART   43 (263)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999989999999999999999888765

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=95.09  E-value=0.067  Score=48.46  Aligned_cols=93  Identities=15%  Similarity=0.003  Sum_probs=57.3

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhhc
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQIT  177 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~  177 (269)
                      |+....++..|.+...--+|.+++|.|++|.+|..+++++...|++|+.+.+..                   .+..+.+
T Consensus       125 ~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v  204 (329)
T cd08294         125 GMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEAL  204 (329)
T ss_pred             ccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHH
Confidence            333344444454433334789999999877789999999999999877654321                   1221111


Q ss_pred             -----CCCCEEEeccCCCCc-ccCCCcCCCcEEEEeee
Q 024306          178 -----SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  209 (269)
Q Consensus       178 -----~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~  209 (269)
                           +..|+|++++|.+.+ -.-+.++++..++.++.
T Consensus       205 ~~~~~~gvd~vld~~g~~~~~~~~~~l~~~G~iv~~g~  242 (329)
T cd08294         205 KEAAPDGIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGS  242 (329)
T ss_pred             HHHCCCCcEEEEECCCHHHHHHHHHhhccCCEEEEEcc
Confidence                 246888888875322 12234666666666663

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.09  E-value=0.03  Score=48.36  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=33.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      ++||+++|.|+++.+|..+++.|.++|++|++..|+.
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~   39 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE   39 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            6789999999999999999999999999998887753

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.08  E-value=0.036  Score=48.03  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=32.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++|+++|.|+++.+|+.++..|.++|++|+++.|+
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~   39 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDIC   39 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            578999999999999999999999999999888765

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=95.08  E-value=0.051  Score=53.42  Aligned_cols=52  Identities=15%  Similarity=0.091  Sum_probs=43.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------------CCHhhhcCCCCE
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------------KNPEQITSEADI  182 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------------~~l~~~~~~aDi  182 (269)
                      ++|.|||+|.+ |.++|..|+..|..|++++++.                                  .++.+.+++||+
T Consensus         5 ~kIavIG~G~M-G~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~   83 (495)
T PRK07531          5 MKAACIGGGVI-GGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW   83 (495)
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence            47999999887 9999999999999999997542                                  234467889999


Q ss_pred             EEeccCC
Q 024306          183 VIAAAGV  189 (269)
Q Consensus       183 VIsAtg~  189 (269)
                      ||.+++-
T Consensus        84 Vieavpe   90 (495)
T PRK07531         84 IQESVPE   90 (495)
T ss_pred             EEEcCcC
Confidence            9998874

>PRK06114 short chain dehydrogenase; Provisional

Probab=95.08  E-value=0.039  Score=48.53  Aligned_cols=38  Identities=21%  Similarity=0.288  Sum_probs=34.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||.++|.|+++-+|+.+++.|+++|++|.++.++
T Consensus         4 ~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~   41 (254)
T PRK06114          4 FDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLR   41 (254)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999999889999999999999999988765

>PRK06194 hypothetical protein; Provisional

Probab=95.08  E-value=0.034  Score=49.66  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=32.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++|+++|.|+++-+|+.++..|+++|++|+++.+.
T Consensus         3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~   39 (287)
T PRK06194          3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQ   39 (287)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3578999999998888999999999999999888764

>PRK08589 short chain dehydrogenase; Validated

Probab=95.07  E-value=0.026  Score=50.38  Aligned_cols=37  Identities=27%  Similarity=0.315  Sum_probs=33.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~   39 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA   39 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            3689999999998888999999999999999988765

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=95.07  E-value=0.024  Score=50.11  Aligned_cols=36  Identities=17%  Similarity=0.234  Sum_probs=32.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++||+++|.|+++-+|+.+++.|+++|++|.++.|+
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERS   39 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            679999999998888999999999999999988765

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=95.06  E-value=0.023  Score=50.61  Aligned_cols=38  Identities=29%  Similarity=0.378  Sum_probs=34.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++++|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~   43 (278)
T PRK08277          6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRN   43 (278)
T ss_pred             eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999998888999999999999999988765

>PRK06500 short chain dehydrogenase; Provisional

Probab=95.06  E-value=0.024  Score=49.25  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=32.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++||+++|.|+++.+|+.++..|+++|++|.+..|+
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~   39 (249)
T PRK06500          4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRD   39 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence            578999999999999999999999999998877654

>cd08230 glucose_DH Glucose dehydrogenase

Probab=95.06  E-value=0.046  Score=50.68  Aligned_cols=76  Identities=28%  Similarity=0.368  Sum_probs=52.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC---CC------------------CHh--hhcCCCCEEEeccCCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---TK------------------NPE--QITSEADIVIAAAGVA  190 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~---t~------------------~l~--~~~~~aDiVIsAtg~p  190 (269)
                      ..|++|+|+|+|+ +|..+++++...|++|+++.++   ..                  +..  .....+|+||.++|.+
T Consensus       171 ~~g~~vlI~G~G~-vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  249 (355)
T cd08230         171 WNPRRALVLGAGP-IGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVP  249 (355)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCH
Confidence            4789999999866 5999999999999998887652   10                  110  1123579999999976


Q ss_pred             Cccc--CCCcCCCcEEEEeeec
Q 024306          191 NLVR--GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       191 ~~i~--~~~~~~g~vViDv~~~  210 (269)
                      ..+.  -+.++++-.++-+|..
T Consensus       250 ~~~~~~~~~l~~~G~~v~~G~~  271 (355)
T cd08230         250 PLAFEALPALAPNGVVILFGVP  271 (355)
T ss_pred             HHHHHHHHHccCCcEEEEEecC
Confidence            4332  2346777666666654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.06  E-value=0.061  Score=51.85  Aligned_cols=35  Identities=23%  Similarity=0.303  Sum_probs=32.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +.+|+++|+|.|++ |+++++.|+++|+.|++.+..
T Consensus         3 ~~~~~~~v~G~g~~-G~~~a~~l~~~g~~v~~~d~~   37 (445)
T PRK04308          3 FQNKKILVAGLGGT-GISMIAYLRKNGAEVAAYDAE   37 (445)
T ss_pred             CCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999998 999999999999999998754

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=95.06  E-value=0.059  Score=50.16  Aligned_cols=94  Identities=21%  Similarity=0.235  Sum_probs=56.4

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHh---
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE---  174 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~---  174 (269)
                      |+++.-+..+|....---.|.+|+|.|++|.||..+.+++...|+++.+..+++                   .++.   
T Consensus       124 ~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v  203 (326)
T COG0604         124 PLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQV  203 (326)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHH
Confidence            444444455555432222399999999888899999999999996533332221                   1122   


Q ss_pred             -hhc--CCCCEEEeccCCCCcc-cCCCcCCCcEEEEeeec
Q 024306          175 -QIT--SEADIVIAAAGVANLV-RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       175 -~~~--~~aDiVIsAtg~p~~i-~~~~~~~g~vViDv~~~  210 (269)
                       +.+  +..|+|++.+|.+.+- .-..++++-.++.++..
T Consensus       204 ~~~t~g~gvDvv~D~vG~~~~~~~l~~l~~~G~lv~ig~~  243 (326)
T COG0604         204 RELTGGKGVDVVLDTVGGDTFAASLAALAPGGRLVSIGAL  243 (326)
T ss_pred             HHHcCCCCceEEEECCCHHHHHHHHHHhccCCEEEEEecC
Confidence             233  2478888888865431 23345555555566643

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=95.05  E-value=0.083  Score=49.84  Aligned_cols=93  Identities=15%  Similarity=0.163  Sum_probs=60.2

Q ss_pred             cCCHHHHHHHHHHhCCC-CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC---------------------Hh
Q 024306          117 PCTPKGCIELLIRSGVE-IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------------PE  174 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~-l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---------------------l~  174 (269)
                      +|....+...+...... -.|.+++|.|+|+ +|..+++++..+|++|+++.+..+.                     +.
T Consensus       159 ~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~-vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~  237 (375)
T PLN02178        159 LCAGITVYSPMKYYGMTKESGKRLGVNGLGG-LGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMK  237 (375)
T ss_pred             hccchHHHHHHHHhCCCCCCCCEEEEEcccH-HHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHH
Confidence            34434444555544433 3689999999876 5999999999999987766433211                     11


Q ss_pred             hhcCCCCEEEeccCCCCcc--cCCCcCCCcEEEEeeec
Q 024306          175 QITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       175 ~~~~~aDiVIsAtg~p~~i--~~~~~~~g~vViDv~~~  210 (269)
                      +.+..+|+||.++|.+..+  .-+.++++-.++.++..
T Consensus       238 ~~~~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~  275 (375)
T PLN02178        238 EAVGTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLP  275 (375)
T ss_pred             HhhCCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccC
Confidence            1223479999998876432  23457787777788864

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.05  E-value=0.03  Score=49.73  Aligned_cols=37  Identities=27%  Similarity=0.302  Sum_probs=33.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++|++++|.|+++-+|+.+++.|+++|++|.++.|+
T Consensus         2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~   38 (273)
T PRK07825          2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLD   38 (273)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECC
Confidence            4678999999998889999999999999999888665

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=95.05  E-value=0.042  Score=47.17  Aligned_cols=78  Identities=23%  Similarity=0.385  Sum_probs=46.7

Q ss_pred             CccceEEEEc----------------CCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------CHhhhc
Q 024306          134 IMGKNAVVIG----------------RSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQIT  177 (269)
Q Consensus       134 l~gk~v~ViG----------------~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~~~~  177 (269)
                      ++||+|+|-+                ++|-.|.++|..+..+||+|++++....                    .+.+.+
T Consensus         1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~~   80 (185)
T PF04127_consen    1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKELL   80 (185)
T ss_dssp             -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHHG
T ss_pred             CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccccccceEEEecchhhhhhhhcccc
Confidence            4678888775                3444599999999999999999986631                    123567


Q ss_pred             CCCCEEEeccCCCCcc----cCCCcCC---CcEEEEeeecC
Q 024306          178 SEADIVIAAAGVANLV----RGSWLKP---GAVVLDVGTCP  211 (269)
Q Consensus       178 ~~aDiVIsAtg~p~~i----~~~~~~~---g~vViDv~~~~  211 (269)
                      +++|++|.|.-...|-    ...-+++   ....+.+.-+|
T Consensus        81 ~~~Di~I~aAAVsDf~p~~~~~~KIkK~~~~~l~l~L~~~p  121 (185)
T PF04127_consen   81 PSADIIIMAAAVSDFRPEEPAEGKIKKSSGDELTLELKPTP  121 (185)
T ss_dssp             GGGSEEEE-SB--SEEESCHHSS-G---TT-CEEEEEEE-G
T ss_pred             CcceeEEEecchhheeehhccccccccccCcceEEEEEeCh
Confidence            8899999877755542    2234552   35777877776

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=95.04  E-value=0.06  Score=51.40  Aligned_cols=71  Identities=25%  Similarity=0.357  Sum_probs=49.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------------------CCHhhhcCCCCEEEe
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------KNPEQITSEADIVIA  185 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------------------~~l~~~~~~aDiVIs  185 (269)
                      +|.|||.|-+ |.++|..|+. |.+|+.+++..                                .+..+..++||+||.
T Consensus         2 kI~VIGlGyv-Gl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          2 KITISGTGYV-GLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             EEEEECCCHH-HHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            5899999886 9999987774 88999997541                                112344688999999


Q ss_pred             ccCCCC----------ccc------CCCcCCCcEEEEeeecC
Q 024306          186 AAGVAN----------LVR------GSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       186 Atg~p~----------~i~------~~~~~~g~vViDv~~~~  211 (269)
                      +++.|-          .+.      .. +++|.+||+...-|
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~  120 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP  120 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence            998651          110      11 36788888766544

>PRK12743 oxidoreductase; Provisional

Probab=95.04  E-value=0.058  Score=47.48  Aligned_cols=33  Identities=21%  Similarity=0.310  Sum_probs=30.1

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      +|+++|.|+++.+|+.+++.|+++|++|.++.+
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~   34 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWH   34 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence            689999999999999999999999999988754

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.03  E-value=0.035  Score=48.43  Aligned_cols=36  Identities=33%  Similarity=0.433  Sum_probs=32.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++|+++|.|+++.+|+.+++.|.++|++|.++.|+
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~   37 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLN   37 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            578999999998889999999999999999888765

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=95.03  E-value=0.057  Score=50.18  Aligned_cols=37  Identities=16%  Similarity=0.079  Sum_probs=33.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      .-+++|+|+|.|+.|.+|+.++..|.++|.+|+.+.+
T Consensus        11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~   47 (348)
T PRK15181         11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN   47 (348)
T ss_pred             ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence            4578899999999999999999999999999887754

>PLN02778 3,5-epimerase/4-reductase

Probab=95.03  E-value=0.061  Score=49.12  Aligned_cols=55  Identities=20%  Similarity=0.159  Sum_probs=41.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC---HhhhcC--CCCEEEeccCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---PEQITS--EADIVIAAAGV  189 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---l~~~~~--~aDiVIsAtg~  189 (269)
                      ..++|+|.|++|.+|+.++..|.++|.+|+.....-.+   +...++  +.|+||.+++.
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~Aa~   67 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLENRASLEADIDAVKPTHVFNAAGV   67 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCccCCHHHHHHHHHhcCCCEEEECCcc
Confidence            34789999999999999999999999998765433222   223333  68999977763

>PLN02858 fructose-bisphosphate aldolase

Probab=95.01  E-value=0.037  Score=60.77  Aligned_cols=74  Identities=18%  Similarity=0.251  Sum_probs=57.8

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCC----cc-cC-
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LV-RG-  195 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~----~i-~~-  195 (269)
                      .++|.+||-|.+ |.+++..|.+.|.+|++.+++.              .+..+.++++|+||.+++.|.    .+ .. 
T Consensus       324 ~~~IGfIGlG~M-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~  402 (1378)
T PLN02858        324 VKRIGFIGLGAM-GFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL  402 (1378)
T ss_pred             CCeEEEECchHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence            378999999987 9999999999999999998762              245567889999999998544    11 11 


Q ss_pred             ---CCcCCCcEEEEeeec
Q 024306          196 ---SWLKPGAVVLDVGTC  210 (269)
Q Consensus       196 ---~~~~~g~vViDv~~~  210 (269)
                         +.+++|.++||+...
T Consensus       403 g~~~~l~~g~ivVd~STv  420 (1378)
T PLN02858        403 GAVSALPAGASIVLSSTV  420 (1378)
T ss_pred             hHHhcCCCCCEEEECCCC
Confidence               235778899998763

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=95.01  E-value=0.033  Score=48.96  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=32.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++|+++|.|+++.+|+.+++.|+++|++|.++.+.
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~   39 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIK   39 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCC
Confidence            678999999998889999999999999999888665

>PLN02214 cinnamoyl-CoA reductase

Probab=95.01  E-value=0.053  Score=50.36  Aligned_cols=35  Identities=20%  Similarity=0.100  Sum_probs=31.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      +++++|+|.|++|.+|+.++..|.++|.+|+.+.|
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r   42 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVR   42 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            57899999999988999999999999999887755

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.00  E-value=0.064  Score=52.59  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=32.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +.+++|+|+|.|++ |+++|++|.++|++|+.++..
T Consensus         5 ~~~~~i~v~G~G~s-G~s~a~~L~~~G~~v~~~D~~   39 (498)
T PRK02006          5 LQGPMVLVLGLGES-GLAMARWCARHGARLRVADTR   39 (498)
T ss_pred             cCCCEEEEEeecHh-HHHHHHHHHHCCCEEEEEcCC
Confidence            56899999999998 999999999999999999864

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=94.95  E-value=0.025  Score=54.96  Aligned_cols=55  Identities=24%  Similarity=0.326  Sum_probs=45.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhhcCCCCEEEeccCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      ++||+|+|||.|.. |++-|..|...|.+|++--|..                   .++.+.++.||+|+..++-
T Consensus        34 LkgKtIaIIGyGSq-G~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPD  107 (487)
T PRK05225         34 LKGKKIVIVGCGAQ-GLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPD  107 (487)
T ss_pred             hCCCEEEEEccCHH-HHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCCh
Confidence            68999999999886 9998888999999888654431                   2467889999999999983

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.94  E-value=0.042  Score=54.89  Aligned_cols=36  Identities=22%  Similarity=-0.000  Sum_probs=32.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+||.++|.|++|-+|+.++..|+++|++|+++.|+
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn  113 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRS  113 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            478999999998888999999999999999988664

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=94.93  E-value=0.038  Score=46.65  Aligned_cols=37  Identities=24%  Similarity=0.406  Sum_probs=31.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +++||+|+|||+|.+ |.-++..|++.|.+|+++.|+.
T Consensus       164 ~~~~k~V~VVG~G~S-A~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  164 DFKGKRVVVVGGGNS-AVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             GCTTSEEEEE--SHH-HHHHHHHHTTTCSEEEEEESS-
T ss_pred             hcCCCcEEEEcChHH-HHHHHHHHHhhCCEEEEEecCC
Confidence            578999999999998 9999999999999999999864

...

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.92  E-value=0.037  Score=54.59  Aligned_cols=32  Identities=16%  Similarity=0.161  Sum_probs=29.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|.|||+|-+ |.++|..|+..|..|++.+++
T Consensus         6 ~kV~VIGaG~M-G~gIA~~la~aG~~V~l~d~~   37 (503)
T TIGR02279         6 VTVAVIGAGAM-GAGIAQVAASAGHQVLLYDIR   37 (503)
T ss_pred             cEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCC
Confidence            67999999886 999999999999999999765

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=94.92  E-value=0.91  Score=42.02  Aligned_cols=140  Identities=17%  Similarity=0.278  Sum_probs=90.9

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC--CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccc-cceec
Q 024306           28 NKIKACEEVGIKSIVTEFADGC--TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH-PLNIG  104 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~--~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~-~~n~g  104 (269)
                      +-..+++++|.++.-..-..+.  .-|-|.+.++-|++ -++|.|.+-.|.-.   ..+++...+      +++ .+|.|
T Consensus        63 SFE~A~krLG~~Vv~~~~~~sSs~KGEtL~DT~~tl~a-yg~D~iViRH~~eg---aa~~~a~~~------~~~pvINaG  132 (316)
T COG0540          63 SFETAMKRLGADVVNFSDSESSSKKGETLADTIRTLSA-YGVDAIVIRHPEEG---AARLLAEFS------GVNPVINAG  132 (316)
T ss_pred             hHHHHHHHcCCcEEeecCCcccccccccHHHHHHHHHh-hCCCEEEEeCcccc---HHHHHHHhc------CCCceEECC
Confidence            4567889999987544333222  25679999999999 57899999998653   123333322      222 45653


Q ss_pred             ccccCCCCCccccC-CHHHHHHHHHHhCCCCccceEEEEc---CCcccHHHHHHHHHhCCCEEEEEeCCC----------
Q 024306          105 NLAMRGREPLFIPC-TPKGCIELLIRSGVEIMGKNAVVIG---RSNIVGLPTSLLLQRHHATVSIVHALT----------  170 (269)
Q Consensus       105 ~l~~g~~~~~~~p~-t~~g~~~~l~~~~~~l~gk~v~ViG---~gg~vg~~~a~~L~~~ga~Vti~~~~t----------  170 (269)
                      -   |  .. -.|+ +-.-...+.+++|. ++|++|+++|   .|.+ .+..+.+|...|++|.++...+          
T Consensus       133 D---G--~~-qHPTQ~LLDl~TI~~~~G~-~~gl~iaivGDlkhsRv-a~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~  204 (316)
T COG0540         133 D---G--SH-QHPTQALLDLYTIREEFGR-LDGLKIAIVGDLKHSRV-AHSNIQALKRFGAEVYLVSPETLLPPEYILEE  204 (316)
T ss_pred             C---C--CC-CCccHHHHHHHHHHHHhCC-cCCcEEEEEccccchHH-HHHHHHHHHHcCCEEEEECchHhCCchhHHHH
Confidence            2   2  11 1233 22223344445544 9999999999   5665 8999999999999999995431          


Q ss_pred             -----------CCHhhhcCCCCEEEe
Q 024306          171 -----------KNPEQITSEADIVIA  185 (269)
Q Consensus       171 -----------~~l~~~~~~aDiVIs  185 (269)
                                 ...++.+.++|++..
T Consensus       205 l~~~~~~~~~~~~~e~~i~~~DVl~~  230 (316)
T COG0540         205 LEEKGGVVVEHDSDEEVIEEADVLYM  230 (316)
T ss_pred             HhhcCceEEEecchhhhhccCCEEEe
Confidence                       233458889999873

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.89  E-value=0.08  Score=48.85  Aligned_cols=53  Identities=28%  Similarity=0.434  Sum_probs=40.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC--------------------------CCCHhhhcCCCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL--------------------------TKNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~--------------------------t~~l~~~~~~aDiVIsAtg~  189 (269)
                      ++|.|||+|.+ |..+|..|+.+|. +|++++..                          +.++. .+++||+||.+.|.
T Consensus         2 ~KV~VIGaG~v-G~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~-~~~~aDiVIitag~   79 (305)
T TIGR01763         2 KKISVIGAGFV-GATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYA-DTANSDIVVITAGL   79 (305)
T ss_pred             CEEEEECcCHH-HHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHH-HhCCCCEEEEcCCC
Confidence            47999999774 9999999999875 78888643                          12333 37899999999996


Q ss_pred             CC
Q 024306          190 AN  191 (269)
Q Consensus       190 p~  191 (269)
                      |.
T Consensus        80 p~   81 (305)
T TIGR01763        80 PR   81 (305)
T ss_pred             CC
Confidence            53

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.89  E-value=0.15  Score=44.32  Aligned_cols=93  Identities=27%  Similarity=0.339  Sum_probs=61.0

Q ss_pred             CCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhh--
Q 024306          118 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQI--  176 (269)
Q Consensus       118 ~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~--  176 (269)
                      +....+...+++...-.+|.+++|.|+|+ +|..+++++...|++|+.+.+..                   .+..+.  
T Consensus       117 ~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  195 (271)
T cd05188         117 EPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELR  195 (271)
T ss_pred             CHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHH
Confidence            33333445555544445799999999999 79999999999999888775531                   011111  


Q ss_pred             ---cCCCCEEEeccCCCCcc--cCCCcCCCcEEEEeeecC
Q 024306          177 ---TSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       177 ---~~~aDiVIsAtg~p~~i--~~~~~~~g~vViDv~~~~  211 (269)
                         -+..|++|++++.+..+  ..+.++++..+++++...
T Consensus       196 ~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         196 LTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             HhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCC
Confidence               24579999888763221  234566777777887544

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.88  E-value=0.042  Score=48.50  Aligned_cols=36  Identities=22%  Similarity=0.261  Sum_probs=31.1

Q ss_pred             CccceEEEEcCC--cccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~g--g~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++||.++|.|++  +-+|+++++.|+++|++|.++.|+
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~   42 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN   42 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence            689999999997  235999999999999999988654

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=94.88  E-value=0.043  Score=51.56  Aligned_cols=78  Identities=19%  Similarity=0.224  Sum_probs=52.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCCC---------------CCH-hhhcCCCCEEEeccCCCC--cc
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT---------------KNP-EQITSEADIVIAAAGVAN--LV  193 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~t---------------~~l-~~~~~~aDiVIsAtg~p~--~i  193 (269)
                      ...+|.|+|++|.+|+.+.++|.+++.   ++..+.+..               .++ .+.+.++|+||.|+|...  -+
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~~   85 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKKF   85 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHHH
Confidence            457899999999999999999998664   444332221               011 134578999999998421  12


Q ss_pred             cCCCcCCCcEEEEeeecCC
Q 024306          194 RGSWLKPGAVVLDVGTCPV  212 (269)
Q Consensus       194 ~~~~~~~g~vViDv~~~~~  212 (269)
                      -+...+.|+.|||.+-...
T Consensus        86 ~~~~~~~g~~VIDlS~~fR  104 (344)
T PLN02383         86 GPIAVDKGAVVVDNSSAFR  104 (344)
T ss_pred             HHHHHhCCCEEEECCchhh
Confidence            2233457999999985543

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.87  E-value=0.058  Score=52.23  Aligned_cols=35  Identities=29%  Similarity=0.253  Sum_probs=32.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|++|.|+|.|+. |+++|..|.++|++|+++++.
T Consensus         7 ~~~~~i~viG~G~~-G~~~a~~l~~~G~~v~~~D~~   41 (460)
T PRK01390          7 FAGKTVAVFGLGGS-GLATARALVAGGAEVIAWDDN   41 (460)
T ss_pred             cCCCEEEEEeecHh-HHHHHHHHHHCCCEEEEECCC
Confidence            67899999999998 999999999999999999865

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=94.86  E-value=0.046  Score=48.03  Aligned_cols=37  Identities=27%  Similarity=0.292  Sum_probs=33.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++|+++|.|+++-+|+++++.|+++|++|.++.|.
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~   41 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRS   41 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            3689999999998889999999999999999988764

>PRK07576 short chain dehydrogenase; Provisional

Probab=94.85  E-value=0.046  Score=48.55  Aligned_cols=37  Identities=27%  Similarity=0.413  Sum_probs=33.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++|+++|.|+++-+|+.++..|+.+|++|+++.|+
T Consensus         6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~   42 (264)
T PRK07576          6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRS   42 (264)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998888999999999999999998765

>PRK12742 oxidoreductase; Provisional

Probab=94.85  E-value=0.048  Score=47.07  Aligned_cols=36  Identities=25%  Similarity=0.299  Sum_probs=31.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      .++||+++|.|+++-+|+.+++.|+++|++|.+..+
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~   38 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA   38 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence            367999999999888899999999999999877643

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=94.84  E-value=0.032  Score=54.55  Aligned_cols=71  Identities=20%  Similarity=0.292  Sum_probs=51.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------CHhh---hcCCCCEEEeccCCCC----
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPEQ---ITSEADIVIAAAGVAN----  191 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------~l~~---~~~~aDiVIsAtg~p~----  191 (269)
                      +|.+||.|.+ |.++|..|++.|.+|++.+|+..                   ++.+   .++++|+||..++...    
T Consensus         1 ~IG~IGLG~M-G~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~   79 (467)
T TIGR00873         1 DIGVIGLAVM-GSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDA   79 (467)
T ss_pred             CEEEEeeHHH-HHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHH
Confidence            3789999987 99999999999999999988631                   1222   2346798888876532    


Q ss_pred             ccc--CCCcCCCcEEEEeee
Q 024306          192 LVR--GSWLKPGAVVLDVGT  209 (269)
Q Consensus       192 ~i~--~~~~~~g~vViDv~~  209 (269)
                      .+.  ...+++|.+|||.+.
T Consensus        80 Vi~~l~~~L~~g~iIID~gn   99 (467)
T TIGR00873        80 VINQLLPLLEKGDIIIDGGN   99 (467)
T ss_pred             HHHHHHhhCCCCCEEEECCC
Confidence            121  124678999999985

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>cd00704 MDH Malate dehydrogenase

Probab=94.83  E-value=0.075  Score=49.52  Aligned_cols=54  Identities=13%  Similarity=0.331  Sum_probs=40.6

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC-------EEEEEeCCC--------------------------CCHhhhcCCCCEEE
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHA-------TVSIVHALT--------------------------KNPEQITSEADIVI  184 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga-------~Vti~~~~t--------------------------~~l~~~~~~aDiVI  184 (269)
                      +|+|+|++|.||..++..|..++.       ++.+++...                          .+..+.+++||+||
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV   81 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI   81 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence            799999966679999999987662       266665432                          23457789999999


Q ss_pred             eccCCCC
Q 024306          185 AAAGVAN  191 (269)
Q Consensus       185 sAtg~p~  191 (269)
                      .+.|.|.
T Consensus        82 itAG~~~   88 (323)
T cd00704          82 LVGAFPR   88 (323)
T ss_pred             EeCCCCC
Confidence            9988653

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=94.83  E-value=0.074  Score=51.68  Aligned_cols=53  Identities=21%  Similarity=0.162  Sum_probs=43.7

Q ss_pred             ccCCHHHHHHHH----HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE-EEeCC
Q 024306          116 IPCTPKGCIELL----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHAL  169 (269)
Q Consensus       116 ~p~t~~g~~~~l----~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt-i~~~~  169 (269)
                      -++|++|++..+    ++.+.+++||+|+|=|.|.+ |..+++.|.+.|++|. +++++
T Consensus       213 ~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnV-g~~aa~~L~e~GakVVavSD~~  270 (454)
T PTZ00079        213 PEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNV-AQYAVEKLLQLGAKVLTMSDSD  270 (454)
T ss_pred             CcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEEcCC
Confidence            357988876554    55678899999999999885 9999999999999966 77655

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.83  E-value=0.043  Score=49.22  Aligned_cols=35  Identities=17%  Similarity=0.264  Sum_probs=31.1

Q ss_pred             CccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++||.++|.|++   |+ |+++|+.|+++|++|.++.|+
T Consensus         5 l~~k~~lVTGas~~~GI-G~aiA~~la~~Ga~V~~~~r~   42 (271)
T PRK06505          5 MQGKRGLIMGVANDHSI-AWGIAKQLAAQGAELAFTYQG   42 (271)
T ss_pred             cCCCEEEEeCCCCCCcH-HHHHHHHHHhCCCEEEEecCc
Confidence            689999999998   55 999999999999999888654

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.82  E-value=0.037  Score=50.08  Aligned_cols=32  Identities=19%  Similarity=0.162  Sum_probs=28.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|.|||+|-+ |.+++..|+..|.+|++++++
T Consensus         4 ~kI~VIG~G~m-G~~ia~~la~~g~~V~~~d~~   35 (282)
T PRK05808          4 QKIGVIGAGTM-GNGIAQVCAVAGYDVVMVDIS   35 (282)
T ss_pred             cEEEEEccCHH-HHHHHHHHHHCCCceEEEeCC
Confidence            57999999886 999999999999999998743

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.82  E-value=0.049  Score=48.23  Aligned_cols=37  Identities=16%  Similarity=0.266  Sum_probs=32.0

Q ss_pred             CCCccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||.++|.|++   |+ |+++++.|+++|++|.++.++
T Consensus         6 ~~~~~k~~lItGas~g~GI-G~a~a~~la~~G~~v~l~~r~   45 (258)
T PRK07533          6 LPLAGKRGLVVGIANEQSI-AWGCARAFRALGAELAVTYLN   45 (258)
T ss_pred             cccCCCEEEEECCCCCCcH-HHHHHHHHHHcCCEEEEEeCC
Confidence            45789999999986   55 999999999999999888664

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=94.81  E-value=0.045  Score=56.16  Aligned_cols=73  Identities=27%  Similarity=0.322  Sum_probs=54.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCCC----------------CCHhhhcCCCCEEEeccCCCC---ccc-
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALT----------------KNPEQITSEADIVIAAAGVAN---LVR-  194 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~t----------------~~l~~~~~~aDiVIsAtg~p~---~i~-  194 (269)
                      ++|.|||.|.+ |.+++..|.+.|  .+|++++++.                .++.+.+.++|+||.+++...   .+. 
T Consensus         4 ~~I~IIG~G~m-G~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~   82 (735)
T PRK14806          4 GRVVVIGLGLI-GGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVLAD   82 (735)
T ss_pred             cEEEEEeeCHH-HHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHHHH
Confidence            67999999986 999999999988  4788887652                234455789999999998422   111 


Q ss_pred             -CCCcCCCcEEEEeeec
Q 024306          195 -GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       195 -~~~~~~g~vViDv~~~  210 (269)
                       ...++++++|+|++..
T Consensus        83 l~~~~~~~~ii~d~~sv   99 (735)
T PRK14806         83 LKPLLSEHAIVTDVGST   99 (735)
T ss_pred             HHHhcCCCcEEEEcCCC
Confidence             1245678899999854

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.81  E-value=0.074  Score=49.08  Aligned_cols=52  Identities=21%  Similarity=0.277  Sum_probs=40.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCCCC-----------------------CHhhhcCCCCEEEeccCCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALTK-----------------------NPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~t~-----------------------~l~~~~~~aDiVIsAtg~p  190 (269)
                      +|.|||+|. ||.+++..|+.+|  .+|.++++...                       .-.+.+++||+||.++|.|
T Consensus         2 kI~IIGaG~-VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~   78 (308)
T cd05292           2 KVAIVGAGF-VGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN   78 (308)
T ss_pred             EEEEECCCH-HHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence            699999977 5999999999999  46888876531                       0124578999999999964

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=94.81  E-value=0.058  Score=51.30  Aligned_cols=39  Identities=21%  Similarity=0.140  Sum_probs=34.3

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ....++++++|+|++|.+|+.++..|.++|.+|+++.|.
T Consensus        55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~   93 (390)
T PLN02657         55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVARE   93 (390)
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEec
Confidence            355678999999999999999999999999999888764

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.80  E-value=0.041  Score=47.69  Aligned_cols=36  Identities=22%  Similarity=0.433  Sum_probs=33.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++++++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus         5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~   40 (239)
T PRK07666          5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLART   40 (239)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            578999999999989999999999999999998875

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.79  E-value=0.044  Score=54.14  Aligned_cols=32  Identities=22%  Similarity=0.252  Sum_probs=29.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|.|||+|-+ |.++|..|+..|..|++.+++
T Consensus         8 ~~V~VIGaG~M-G~gIA~~la~aG~~V~l~D~~   39 (507)
T PRK08268          8 ATVAVIGAGAM-GAGIAQVAAQAGHTVLLYDAR   39 (507)
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCeEEEEeCC
Confidence            67999999876 999999999999999999765

>PRK06139 short chain dehydrogenase; Provisional

Probab=94.78  E-value=0.025  Score=52.52  Aligned_cols=37  Identities=22%  Similarity=0.270  Sum_probs=33.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++|+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~   40 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARD   40 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4688999999998888999999999999999998765

>PRK06223 malate dehydrogenase; Reviewed

Probab=94.76  E-value=0.091  Score=48.11  Aligned_cols=53  Identities=26%  Similarity=0.404  Sum_probs=40.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHhhhcCCCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      ++|.|||+|. ||..++..++..|. +|.+.+...                          .+. +.+++||+||.++|.
T Consensus         3 ~KI~VIGaG~-vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~   80 (307)
T PRK06223          3 KKISIIGAGN-VGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGV   80 (307)
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCC
Confidence            5899999966 59999999998874 888886431                          123 457899999999886


Q ss_pred             CC
Q 024306          190 AN  191 (269)
Q Consensus       190 p~  191 (269)
                      |.
T Consensus        81 p~   82 (307)
T PRK06223         81 PR   82 (307)
T ss_pred             CC
Confidence            53

>PRK12939 short chain dehydrogenase; Provisional

Probab=94.76  E-value=0.044  Score=47.52  Aligned_cols=37  Identities=30%  Similarity=0.366  Sum_probs=32.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++|+++|.|+++.+|+.+++.|.++|++|.++.+.
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~   40 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGL   40 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCC
Confidence            4678999999998888999999999999998887654

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=94.75  E-value=0.055  Score=50.83  Aligned_cols=76  Identities=24%  Similarity=0.302  Sum_probs=51.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhC-CCEEE-EEeCCC---C--------------------CHhhhcCCCCEEEeccCCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRH-HATVS-IVHALT---K--------------------NPEQITSEADIVIAAAGVAN  191 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~-ga~Vt-i~~~~t---~--------------------~l~~~~~~aDiVIsAtg~p~  191 (269)
                      .+|.|+|++|.+|+-+++.|.++ +.++. ++.++.   +                    +..+...++|+||.|+|...
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~   80 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV   80 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence            37999999888899999999877 46766 544321   1                    11233357999999998421


Q ss_pred             --cccCCCcCCCcEEEEeeecCC
Q 024306          192 --LVRGSWLKPGAVVLDVGTCPV  212 (269)
Q Consensus       192 --~i~~~~~~~g~vViDv~~~~~  212 (269)
                        -+-+...+.|..|||++....
T Consensus        81 s~~~~~~~~~~G~~VIDlS~~fR  103 (346)
T TIGR01850        81 SAELAPELLAAGVKVIDLSADFR  103 (346)
T ss_pred             HHHHHHHHHhCCCEEEeCChhhh
Confidence              133334567899999986543

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.73  E-value=0.072  Score=48.89  Aligned_cols=58  Identities=17%  Similarity=0.257  Sum_probs=45.8

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------------------CCHhhhc
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------------KNPEQIT  177 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------------------~~l~~~~  177 (269)
                      ..+++|+.|+|-|+|.-+||.+|..++++|+++.+.+.+.                                 +.+++..
T Consensus        33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~  112 (300)
T KOG1201|consen   33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEV  112 (300)
T ss_pred             hhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            4578999999999999999999999999999765553221                                 1234556


Q ss_pred             CCCCEEEeccC
Q 024306          178 SEADIVIAAAG  188 (269)
Q Consensus       178 ~~aDiVIsAtg  188 (269)
                      ..-||+||.+|
T Consensus       113 G~V~ILVNNAG  123 (300)
T KOG1201|consen  113 GDVDILVNNAG  123 (300)
T ss_pred             CCceEEEeccc
Confidence            77899999998

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.72  E-value=0.056  Score=46.56  Aligned_cols=37  Identities=32%  Similarity=0.282  Sum_probs=32.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++|+++|.|+++.+|+.+++.|.++|++|+++.++
T Consensus         2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~   38 (248)
T PRK05557          2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYAS   38 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4678999999999999999999999999998777554

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=94.72  E-value=0.059  Score=48.75  Aligned_cols=52  Identities=17%  Similarity=0.224  Sum_probs=41.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcCCCCEEEeccC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAG  188 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~aDiVIsAtg  188 (269)
                      ++++|.|++|.+|+.++..|.++|.+|+++.|...                     ++.+.++.+|+||...+
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            36999999888999999999999999988876421                     23456677899997765

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=94.72  E-value=0.05  Score=47.24  Aligned_cols=36  Identities=22%  Similarity=0.250  Sum_probs=32.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++|+++|.|+++.+|+.+++.|+++|++|.+..++
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~   36 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLN   36 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            478999999999989999999999999998887654

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.71  E-value=0.054  Score=46.62  Aligned_cols=37  Identities=32%  Similarity=0.379  Sum_probs=33.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++.+++++|.|+++.+|+.+++.|.++|++|+++.|.
T Consensus         2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~   38 (246)
T PRK05653          2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSN   38 (246)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3567899999999989999999999999999888775

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.70  E-value=0.047  Score=51.19  Aligned_cols=84  Identities=20%  Similarity=0.222  Sum_probs=57.4

Q ss_pred             HHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------CHhhhcC-CCCEEE
Q 024306          125 ELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPEQITS-EADIVI  184 (269)
Q Consensus       125 ~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------~l~~~~~-~aDiVI  184 (269)
                      +.|++.+. -.|++|+|+|.||. |..+++++..+||+|+.+.+..+                   +..+.++ .+|++|
T Consensus       157 ~alk~~~~-~pG~~V~I~G~GGl-Gh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii  234 (339)
T COG1064         157 RALKKANV-KPGKWVAVVGAGGL-GHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAII  234 (339)
T ss_pred             eehhhcCC-CCCCEEEEECCcHH-HHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEE
Confidence            34554322 36999999999986 99999988889999999976532                   1112222 288888


Q ss_pred             eccCCCCcc--cCCCcCCCcEEEEeeecC
Q 024306          185 AAAGVANLV--RGSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       185 sAtg~p~~i--~~~~~~~g~vViDv~~~~  211 (269)
                      ++++ +..+  .-+.++++-.++=+|..+
T Consensus       235 ~tv~-~~~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         235 DTVG-PATLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             ECCC-hhhHHHHHHHHhcCCEEEEECCCC
Confidence            8888 5543  334577776666778764

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=94.68  E-value=0.065  Score=50.34  Aligned_cols=69  Identities=16%  Similarity=0.216  Sum_probs=50.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC--------CEEEEEeC-----C----------------------------CCCHhhh
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHH--------ATVSIVHA-----L----------------------------TKNPEQI  176 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~g--------a~Vti~~~-----~----------------------------t~~l~~~  176 (269)
                      +|.|||+|.. |.++|..|++.|        .+|++..+     .                            +.++.+.
T Consensus         1 kI~VIGaG~w-GtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea   79 (342)
T TIGR03376         1 RVAVVGSGNW-GTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA   79 (342)
T ss_pred             CEEEECcCHH-HHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence            5899999886 999999999888        78888755     1                            1356788


Q ss_pred             cCCCCEEEeccCCCC---c---ccCCCcCCCcEEEEee
Q 024306          177 TSEADIVIAAAGVAN---L---VRGSWLKPGAVVLDVG  208 (269)
Q Consensus       177 ~~~aDiVIsAtg~p~---~---i~~~~~~~g~vViDv~  208 (269)
                      +++||+||-|++...   .   +. .++++++.++-+.
T Consensus        80 l~~ADiIIlAVPs~~i~~vl~~l~-~~l~~~~~iVs~t  116 (342)
T TIGR03376        80 AKGADILVFVIPHQFLEGICKQLK-GHVKPNARAISCI  116 (342)
T ss_pred             HhcCCEEEEECChHHHHHHHHHHH-hhcCCCCEEEEEe
Confidence            899999999998532   1   22 2456666666554

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK06153 hypothetical protein; Provisional

Probab=94.65  E-value=0.042  Score=52.35  Aligned_cols=34  Identities=15%  Similarity=0.288  Sum_probs=30.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEe
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH  167 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~  167 (269)
                      .|++++|+|||.||. |..++..|++.|. ++++++
T Consensus       173 kL~~~~VaIVG~GG~-GS~Va~~LAR~GVgeI~LVD  207 (393)
T PRK06153        173 KLEGQRIAIIGLGGT-GSYILDLVAKTPVREIHLFD  207 (393)
T ss_pred             HHhhCcEEEEcCCcc-HHHHHHHHHHcCCCEEEEEC
Confidence            378999999999997 9999999999996 688883

>PRK07326 short chain dehydrogenase; Provisional

Probab=94.65  E-value=0.057  Score=46.58  Aligned_cols=36  Identities=25%  Similarity=0.280  Sum_probs=32.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +.+++++|+|++|.+|+.+++.|+++|++|.++.|.
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~   39 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARD   39 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCC
Confidence            468999999998889999999999999999998765

>PRK08226 short chain dehydrogenase; Provisional

Probab=94.65  E-value=0.054  Score=47.68  Aligned_cols=36  Identities=22%  Similarity=0.379  Sum_probs=32.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++|+++|.|+++.+|+.++..|.++|++|+++.|.
T Consensus         4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~   39 (263)
T PRK08226          4 LTGKTALITGALQGIGEGIARVFARHGANLILLDIS   39 (263)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            678999999999999999999999999999888765

>PRK07806 short chain dehydrogenase; Provisional

Probab=94.65  E-value=0.059  Score=46.88  Aligned_cols=36  Identities=31%  Similarity=0.333  Sum_probs=32.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++|+++|.|+++-+|+.++..|.++|++|+++.|+
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~   39 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQ   39 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            678999999998778999999999999999887664

>PRK08278 short chain dehydrogenase; Provisional

Probab=94.64  E-value=0.055  Score=48.36  Aligned_cols=37  Identities=27%  Similarity=0.384  Sum_probs=33.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++.+|+.+++.|+++|++|.++.|+
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (273)
T PRK08278          3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKT   39 (273)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            3678999999999999999999999999999888764

>PRK05875 short chain dehydrogenase; Provisional

Probab=94.62  E-value=0.056  Score=48.00  Aligned_cols=37  Identities=22%  Similarity=0.154  Sum_probs=33.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++|+++|.|+++.+|+.+++.|.++|++|.++.|+
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~   40 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRN   40 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4688999999998888999999999999999988764

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.61  E-value=0.036  Score=48.14  Aligned_cols=36  Identities=17%  Similarity=0.249  Sum_probs=32.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|++++|+|+++.+|+.+++.|.++|++|+++.+.
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~   38 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLN   38 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            679999999997778999999999999998888765

>PLN00106 malate dehydrogenase

Probab=94.59  E-value=0.13  Score=47.99  Aligned_cols=57  Identities=26%  Similarity=0.380  Sum_probs=42.6

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCC-----------------------CCCHhhhcCCCCEEEeccCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHAL-----------------------TKNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~-----------------------t~~l~~~~~~aDiVIsAtg~  189 (269)
                      ..++|+|+|+.|.||..+++.|+.++.  ++.+++..                       +.++.+.+++||+||.+.|.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            346899999944469999999987663  57766431                       23456789999999999986


Q ss_pred             CC
Q 024306          190 AN  191 (269)
Q Consensus       190 p~  191 (269)
                      |.
T Consensus        97 ~~   98 (323)
T PLN00106         97 PR   98 (323)
T ss_pred             CC
Confidence            43

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=94.58  E-value=0.52  Score=46.77  Aligned_cols=146  Identities=13%  Similarity=0.064  Sum_probs=91.7

Q ss_pred             HHHHHHHHc-CCeEEEEEcCCC--CCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-cccccccc---c
Q 024306           28 NKIKACEEV-GIKSIVTEFADG--CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EKDVDGFH---P  100 (269)
Q Consensus        28 ~~~~~~~~~-Gi~~~~~~~~~~--~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~kdvdg~~---~  100 (269)
                      +-..++.++ |..+.+..-...  ...|-+.+.++-|+.--+.++|.+-.|.....  ..+.+.+.. .+.. ++.   .
T Consensus        67 SFE~A~~~LgGg~~i~l~~~~ssl~kGESl~DTarvLs~y~D~d~IviR~~~~g~~--~~~~~~l~~~a~~s-~vpVp~V  143 (525)
T PRK13376         67 SFINAAKFHKNVKVNIFDSEHSSFNKQESYTDTFNMLTGYSDYSIFIVRTRLEGVC--RLLEEKVSEFASRN-GIEVPAF  143 (525)
T ss_pred             HHHHHHHHcCCCcEEEcCCccccCCCCcCHHHHHHHHHHcCCCcEEEEeCCccchh--HHHHHHHHHHHHhc-CCCcceE
Confidence            345677778 888877643211  01356778888787742224898887754322  222222222 1111 111   2


Q ss_pred             ceecccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC--cccHHHHHHHHHhCC-CEEEEEeCC-------
Q 024306          101 LNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRHH-ATVSIVHAL-------  169 (269)
Q Consensus       101 ~n~g~l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~g--g~vg~~~a~~L~~~g-a~Vti~~~~-------  169 (269)
                      +|.|      +.+.+.||=+.+ ++.+.++.+.+++|++|+++|.+  +-+.+.++..|+..| ++|+++...       
T Consensus       144 INAg------dg~~~HPTQaLaDl~TI~E~~G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~  217 (525)
T PRK13376        144 INAG------DGKHEHPTQELLDEFTFLEQNNFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEH  217 (525)
T ss_pred             EECC------CCCCCCchHHHHHHHHHHHHcCCCcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHH
Confidence            4642      234466887777 55666666657999999999995  345888899999998 899999643       


Q ss_pred             --------------CCCHhhhcCCCCE
Q 024306          170 --------------TKNPEQITSEADI  182 (269)
Q Consensus       170 --------------t~~l~~~~~~aDi  182 (269)
                                    +.++.+++++||+
T Consensus       218 ~~~~a~~~G~~v~i~~d~~eav~~AD~  244 (525)
T PRK13376        218 YVEKMKKNGFEVRIFSSIEEYLSQKDV  244 (525)
T ss_pred             HHHHHHHcCCeEEEEcCHHHHhccCCc
Confidence                          1456788899994

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.57  E-value=0.05  Score=47.00  Aligned_cols=37  Identities=35%  Similarity=0.442  Sum_probs=32.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEE-eCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV-HAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~-~~~  169 (269)
                      ++.+|+++|+|+++.+|+.++..|+++|++|.++ .|.
T Consensus         2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~   39 (247)
T PRK05565          2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDIN   39 (247)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            3678999999998888999999999999998887 654

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.55  E-value=0.058  Score=49.22  Aligned_cols=39  Identities=33%  Similarity=0.354  Sum_probs=34.7

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..+++||+++|.|+++-+|+.++..|+++|++|.++.+.
T Consensus         7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~   45 (306)
T PRK07792          7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVA   45 (306)
T ss_pred             CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCC
Confidence            367899999999999989999999999999998887653

>PRK09414 glutamate dehydrogenase; Provisional

Probab=94.54  E-value=0.085  Score=51.26  Aligned_cols=51  Identities=24%  Similarity=0.187  Sum_probs=42.3

Q ss_pred             cccCCHHHHHHHH----HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEE
Q 024306          115 FIPCTPKGCIELL----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  166 (269)
Q Consensus       115 ~~p~t~~g~~~~l----~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~  166 (269)
                      -.+.|++|+...+    ++.+.+++|++|+|.|.|.+ |+.+|+.|.+.|++|+.+
T Consensus       207 r~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnV-G~~~A~~L~~~GakVVav  261 (445)
T PRK09414        207 RTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNV-AIYAIEKAQQLGAKVVTC  261 (445)
T ss_pred             CCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEE
Confidence            3467888875555    45678999999999999885 999999999999997655

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=94.53  E-value=0.057  Score=50.05  Aligned_cols=76  Identities=13%  Similarity=0.125  Sum_probs=51.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC----CCHhhhcCCCCEEEeccCCCC--cccCCCcCCCcEEEEeee
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT----KNPEQITSEADIVIAAAGVAN--LVRGSWLKPGAVVLDVGT  209 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t----~~l~~~~~~aDiVIsAtg~p~--~i~~~~~~~g~vViDv~~  209 (269)
                      .+|.|+|++|..|.-+.++|.++- .++.-+.+..    .+..+.+.++|++|-|++...  -+-+.....|+.|||++.
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~~~~~~~~~~~~~D~vFlalp~~~s~~~~~~~~~~g~~VIDlSa   81 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRKDAAERAKLLNAADVAILCLPDDAAREAVSLVDNPNTCIIDAST   81 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccccCcCCHhHhhcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECCh
Confidence            379999999999999999998775 3544333221    133455678999999997421  122223456899999996


Q ss_pred             cCC
Q 024306          210 CPV  212 (269)
Q Consensus       210 ~~~  212 (269)
                      ...
T Consensus        82 dfR   84 (310)
T TIGR01851        82 AYR   84 (310)
T ss_pred             HHh
Confidence            644

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK06197 short chain dehydrogenase; Provisional

Probab=94.53  E-value=0.055  Score=49.10  Aligned_cols=37  Identities=27%  Similarity=0.284  Sum_probs=33.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+.+++.|+++|++|.++.|+
T Consensus        13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~   49 (306)
T PRK06197         13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRN   49 (306)
T ss_pred             cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999998888999999999999998887664

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=94.51  E-value=0.055  Score=42.56  Aligned_cols=75  Identities=21%  Similarity=0.220  Sum_probs=47.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhC-CCEEEEE-eCCC---CC-------H--------h-hhc--CCCCEEEeccCCCC---
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRH-HATVSIV-HALT---KN-------P--------E-QIT--SEADIVIAAAGVAN---  191 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~-~~~t---~~-------l--------~-~~~--~~aDiVIsAtg~p~---  191 (269)
                      ++.|+|++|.+|+.++..|.+. +.+++.+ .+..   +.       +        . ..+  .++|+||.+++...   
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            4789998777799888888874 6775544 3221   00       0        0 112  37899999998432   


Q ss_pred             ccc--CCCcCCCcEEEEeeecCC
Q 024306          192 LVR--GSWLKPGAVVLDVGTCPV  212 (269)
Q Consensus       192 ~i~--~~~~~~g~vViDv~~~~~  212 (269)
                      .+.  ...+++|.+|||++....
T Consensus        81 ~~~~~~~~~~~g~~viD~s~~~~  103 (122)
T smart00859       81 IAPLLPKAAEAGVKVIDLSSAFR  103 (122)
T ss_pred             HHHHHHhhhcCCCEEEECCcccc
Confidence            111  223578999999996643

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=94.50  E-value=0.088  Score=46.74  Aligned_cols=51  Identities=22%  Similarity=0.302  Sum_probs=41.4

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------------CHhhhcCCCCEEEeccCC
Q 024306          139 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       139 v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------~l~~~~~~aDiVIsAtg~  189 (269)
                      |+|.|+.|.+|+.+++.|.++|.+|+.+.|...                ...+.+.+.|+||..++.
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~~   67 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAGE   67 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCCC
Confidence            589999999999999999999999999887532                122456779999988874

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=94.49  E-value=0.048  Score=49.79  Aligned_cols=57  Identities=33%  Similarity=0.447  Sum_probs=42.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEE----------------eCC----------CCCHhhhcCCCCEEEecc
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV----------------HAL----------TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~----------------~~~----------t~~l~~~~~~aDiVIsAt  187 (269)
                      -.+.+|.|+|++|-+|.|+..+|. ++..|+-+                |-.          .++|++.+++||+||-+.
T Consensus        26 ~~~~KVAvlGAaGGIGQPLSLLlK-~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPA  104 (345)
T KOG1494|consen   26 QRGLKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPA  104 (345)
T ss_pred             cCcceEEEEecCCccCccHHHHHh-cCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecC
Confidence            457789999998888999998665 54444433                111          146889999999999999


Q ss_pred             CCCC
Q 024306          188 GVAN  191 (269)
Q Consensus       188 g~p~  191 (269)
                      |.|.
T Consensus       105 GVPR  108 (345)
T KOG1494|consen  105 GVPR  108 (345)
T ss_pred             CCCC
Confidence            9765

>PRK06914 short chain dehydrogenase; Provisional

Probab=94.47  E-value=0.059  Score=47.95  Aligned_cols=35  Identities=31%  Similarity=0.208  Sum_probs=31.4

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|.++|.|+++.+|+.++..|+++|++|.++.|+
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~   36 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRN   36 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCC
Confidence            57889999999889999999999999998888664

>PRK06701 short chain dehydrogenase; Provisional

Probab=94.47  E-value=0.061  Score=48.69  Aligned_cols=38  Identities=24%  Similarity=0.360  Sum_probs=34.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++.+|+.++..|+++|++|.++.+.
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~   79 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLD   79 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46789999999999989999999999999999888654

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=94.44  E-value=0.052  Score=49.25  Aligned_cols=39  Identities=33%  Similarity=0.372  Sum_probs=35.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      ..++||.++|-|++.-+|+++|..|++.||+|+++.|+.
T Consensus         4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~   42 (270)
T KOG0725|consen    4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSE   42 (270)
T ss_pred             ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357999999999988889999999999999999998763

>PLN02253 xanthoxin dehydrogenase

Probab=94.42  E-value=0.067  Score=47.67  Aligned_cols=37  Identities=32%  Similarity=0.472  Sum_probs=33.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++||+++|.|+++-+|+++++.|+++|++|.++.+.
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~   51 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQ   51 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence            4689999999999889999999999999999888654

>PRK05693 short chain dehydrogenase; Provisional

Probab=94.42  E-value=0.082  Score=46.98  Aligned_cols=33  Identities=12%  Similarity=0.015  Sum_probs=29.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      |+++|.|+++-+|+.+++.|+++|++|+++.|+
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~   34 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARK   34 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            679999998888999999999999999988765

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=94.42  E-value=0.07  Score=49.13  Aligned_cols=36  Identities=17%  Similarity=0.045  Sum_probs=32.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      ++++|+|+|.|++|.+|+.++..|.++|++|+++.+
T Consensus         3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r   38 (340)
T PLN02653          3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIR   38 (340)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEec
Confidence            678999999999988999999999999999887644

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.41  E-value=0.097  Score=47.95  Aligned_cols=92  Identities=26%  Similarity=0.291  Sum_probs=59.2

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCCCC-------------------C---H
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALTK-------------------N---P  173 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t~-------------------~---l  173 (269)
                      +|....++..++..++ ..|.+|+|+|+|+ +|..+++++..+|++ |+++.+...                   +   +
T Consensus       146 ~~~~~ta~~~l~~~~~-~~g~~vlV~G~G~-vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~  223 (339)
T cd08239         146 LCGIGTAYHALRRVGV-SGRDTVLVVGAGP-VGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEI  223 (339)
T ss_pred             cchHHHHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHH
Confidence            3333334455554443 3599999999865 599999999999998 887754310                   1   1


Q ss_pred             hhhcC--CCCEEEeccCCCCccc--CCCcCCCcEEEEeeec
Q 024306          174 EQITS--EADIVIAAAGVANLVR--GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       174 ~~~~~--~aDiVIsAtg~p~~i~--~~~~~~g~vViDv~~~  210 (269)
                      .+...  .+|+||.++|.+..+.  -+.++++..++-++..
T Consensus       224 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~  264 (339)
T cd08239         224 RELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEG  264 (339)
T ss_pred             HHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCC
Confidence            12222  5899999998754322  2456777677777754

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK12827 short chain dehydrogenase; Provisional

Probab=94.41  E-value=0.066  Score=46.29  Aligned_cols=36  Identities=17%  Similarity=0.268  Sum_probs=31.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      ++++++++|.|+++.+|+.+++.|+++|++|+++.+
T Consensus         3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~   38 (249)
T PRK12827          3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDI   38 (249)
T ss_pred             CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcC
Confidence            367899999999999999999999999999887543

>PRK08643 acetoin reductase; Validated

Probab=94.40  E-value=0.062  Score=47.08  Aligned_cols=34  Identities=26%  Similarity=0.257  Sum_probs=31.1

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +|+++|+|+++.+|+.+++.|+++|++|.++.|.
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~   35 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYN   35 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            6899999999999999999999999999888764

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=94.39  E-value=0.086  Score=48.60  Aligned_cols=54  Identities=24%  Similarity=0.271  Sum_probs=47.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAG  188 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg  188 (269)
                      |+||+|+|||.|.- |++=+..|...|.+|++-.|..              .+..+++++||+|..-+|
T Consensus        16 LkgK~iaIIGYGsQ-G~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~P   83 (338)
T COG0059          16 LKGKKVAIIGYGSQ-GHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLP   83 (338)
T ss_pred             hcCCeEEEEecChH-HHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCc
Confidence            68999999999887 9999999999999999887652              256789999999999998

>PRK12937 short chain dehydrogenase; Provisional

Probab=94.38  E-value=0.069  Score=46.20  Aligned_cols=36  Identities=25%  Similarity=0.242  Sum_probs=31.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      ++++|+++|.|+++.+|+.++..|.++|++|.++.+
T Consensus         2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~   37 (245)
T PRK12937          2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYA   37 (245)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence            467899999999888999999999999999877654

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.37  E-value=0.069  Score=47.38  Aligned_cols=36  Identities=25%  Similarity=0.307  Sum_probs=31.2

Q ss_pred             CCCccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeC
Q 024306          132 VEIMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       132 ~~l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      .+++||.++|.|++   |+ |+++++.|+++|++|.++.|
T Consensus         3 ~~~~~k~~lItGa~~s~GI-G~aia~~la~~G~~v~~~~r   41 (257)
T PRK08594          3 LSLEGKTYVVMGVANKRSI-AWGIARSLHNAGAKLVFTYA   41 (257)
T ss_pred             cccCCCEEEEECCCCCCCH-HHHHHHHHHHCCCEEEEecC
Confidence            35789999999985   65 99999999999999988754

>PRK05086 malate dehydrogenase; Provisional

Probab=94.37  E-value=0.12  Score=47.81  Aligned_cols=55  Identities=27%  Similarity=0.432  Sum_probs=39.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHh-CC--CEEEEEeCC-----------------------CCCHhhhcCCCCEEEeccCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQR-HH--ATVSIVHAL-----------------------TKNPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~-~g--a~Vti~~~~-----------------------t~~l~~~~~~aDiVIsAtg~p  190 (269)
                      ++++|||++|.+|.++++.|.. .+  ..++++.+.                       ..++.+.++++|+||.+.|.+
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            4799999955579999998854 33  356666431                       123456788999999999975


Q ss_pred             C
Q 024306          191 N  191 (269)
Q Consensus       191 ~  191 (269)
                      +
T Consensus        81 ~   81 (312)
T PRK05086         81 R   81 (312)
T ss_pred             C
Confidence            4

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=94.36  E-value=0.063  Score=46.40  Aligned_cols=37  Identities=27%  Similarity=0.378  Sum_probs=32.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++++++|.|+++.+|+.++..|.++|+.|++..++
T Consensus         3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~   39 (245)
T PRK12936          3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTR   39 (245)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence            4689999999998889999999999999988776544

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=94.35  E-value=0.13  Score=47.60  Aligned_cols=52  Identities=21%  Similarity=0.436  Sum_probs=39.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-------------------------CCHhhhcCCCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-------------------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-------------------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      .+|.|||+|. ||..+++.|+.++.  ++.+++.+.                         .+ .+.+++|||||.+.|.
T Consensus         4 ~Ki~IiGaG~-VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~d-y~~~~~adivvitaG~   81 (312)
T cd05293           4 NKVTVVGVGQ-VGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKD-YSVTANSKVVIVTAGA   81 (312)
T ss_pred             CEEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCC-HHHhCCCCEEEECCCC
Confidence            4899999966 59999999988884  577775431                         12 2458999999998886


Q ss_pred             C
Q 024306          190 A  190 (269)
Q Consensus       190 p  190 (269)
                      |
T Consensus        82 ~   82 (312)
T cd05293          82 R   82 (312)
T ss_pred             C
Confidence            4

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=94.34  E-value=0.067  Score=46.98  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=33.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++|+++|+|+++.+|+.+++.|.++|++|.++.++
T Consensus         8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~   44 (255)
T PRK06113          8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN   44 (255)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            3679999999999999999999999999998877654

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.34  E-value=0.083  Score=38.40  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=29.3

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +++|||+|-. |--+|..|.+.|.+|+++++..
T Consensus         1 ~vvViGgG~i-g~E~A~~l~~~g~~vtli~~~~   32 (80)
T PF00070_consen    1 RVVVIGGGFI-GIELAEALAELGKEVTLIERSD   32 (80)
T ss_dssp             EEEEESSSHH-HHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHhCcEEEEEeccc
Confidence            5899999886 9999999999999999998874

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=94.34  E-value=0.095  Score=47.77  Aligned_cols=52  Identities=19%  Similarity=0.284  Sum_probs=42.0

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------CHhhhcC-CCCEEEeccCCC
Q 024306          139 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------NPEQITS-EADIVIAAAGVA  190 (269)
Q Consensus       139 v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------~l~~~~~-~aDiVIsAtg~p  190 (269)
                      |+|-|+.|.+|++++..|.+.|.+|+++.|+.+              .+.+... .+|+|||-.|.|
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~~   67 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGEP   67 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECCCCc
Confidence            478899999999999999999999999988742              2333344 599999999964

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.32  E-value=0.11  Score=52.86  Aligned_cols=34  Identities=24%  Similarity=0.367  Sum_probs=31.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .|++|+|||+|-+ |..+|..|+++|++|+|+.+.
T Consensus       326 ~~~~VaIIGaGpA-GLsaA~~L~~~G~~V~V~E~~  359 (654)
T PRK12769        326 SDKRVAIIGAGPA-GLACADVLARNGVAVTVYDRH  359 (654)
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHHCCCeEEEEecC
Confidence            5899999999998 999999999999999999653

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=94.31  E-value=0.061  Score=52.20  Aligned_cols=37  Identities=22%  Similarity=0.294  Sum_probs=34.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+|+|||+|.+ |.-++-.|...|++|+++.|+
T Consensus       171 ~~~~GKrV~VIG~GaS-A~di~~~l~~~ga~vt~~qRs  207 (443)
T COG2072         171 EDLRGKRVLVIGAGAS-AVDIAPELAEVGASVTLSQRS  207 (443)
T ss_pred             cccCCCeEEEECCCcc-HHHHHHHHHhcCCeeEEEecC
Confidence            5789999999999999 999999999999999999876

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=94.28  E-value=0.057  Score=50.13  Aligned_cols=78  Identities=15%  Similarity=0.159  Sum_probs=51.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC-CCC---HhhhcCCCCEEEeccCCC--CcccCCCcCCCcEEEEeee
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL-TKN---PEQITSEADIVIAAAGVA--NLVRGSWLKPGAVVLDVGT  209 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~-t~~---l~~~~~~aDiVIsAtg~p--~~i~~~~~~~g~vViDv~~  209 (269)
                      -+|.|+|++|.+|.-+.++|.++.- ++.-..+. ..+   ..+...++|+||.|++..  .-+-+...+.|+.|||.+.
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~~~~~~~~~~~~DvvFlalp~~~s~~~~~~~~~~g~~VIDlSa   82 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDAAARRELLNAADVAILCLPDDAAREAVALIDNPATRVIDAST   82 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCcccCchhhhcCCCEEEECCCHHHHHHHHHHHHhCCCEEEECCh
Confidence            4799999999999999999987762 43333222 112   233446799999999731  1122333467899999997


Q ss_pred             cCCCC
Q 024306          210 CPVDD  214 (269)
Q Consensus       210 ~~~~~  214 (269)
                      ...-+
T Consensus        83 dfRl~   87 (313)
T PRK11863         83 AHRTA   87 (313)
T ss_pred             hhhcC
Confidence            65433

>PRK07985 oxidoreductase; Provisional

Probab=94.26  E-value=0.072  Score=48.33  Aligned_cols=36  Identities=22%  Similarity=0.335  Sum_probs=32.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      .++||+++|.|+++-+|+++++.|+++|++|.++.+
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~   81 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYL   81 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecC
Confidence            478999999999888999999999999999888754

>PRK07677 short chain dehydrogenase; Provisional

Probab=94.26  E-value=0.065  Score=46.97  Aligned_cols=34  Identities=21%  Similarity=0.197  Sum_probs=31.0

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ||+++|.|+++-+|+.+++.|+++|++|.++.|+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~   34 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRT   34 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            6899999999989999999999999999888765

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=94.25  E-value=0.11  Score=50.11  Aligned_cols=76  Identities=18%  Similarity=0.195  Sum_probs=54.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------------CHhhhcCCCCEEEe
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------NPEQITSEADIVIA  185 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------------~l~~~~~~aDiVIs  185 (269)
                      +..+|.|||-|-+ |.|+|..|++ +.+|+.+++...                             ...+.+++||++|.
T Consensus         5 ~~mkI~vIGlGyv-GlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii   82 (425)
T PRK15182          5 DEVKIAIIGLGYV-GLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYII   82 (425)
T ss_pred             CCCeEEEECcCcc-hHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEE
Confidence            4468999999886 9999999877 688999876521                             11235789999999


Q ss_pred             ccCCCC---------ccc------CCCcCCCcEEEEeeecCC
Q 024306          186 AAGVAN---------LVR------GSWLKPGAVVLDVGTCPV  212 (269)
Q Consensus       186 Atg~p~---------~i~------~~~~~~g~vViDv~~~~~  212 (269)
                      ++|.|.         .+.      ...+++|.+|||...-+.
T Consensus        83 ~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~p  124 (425)
T PRK15182         83 TVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYP  124 (425)
T ss_pred             EcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence            999762         111      123577899999876653

>PRK07109 short chain dehydrogenase; Provisional

Probab=94.24  E-value=0.044  Score=50.89  Aligned_cols=37  Identities=27%  Similarity=0.231  Sum_probs=33.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++|+++|.|+++-+|+.+++.|+++|++|+++.|+
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~   41 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARG   41 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4678999999998888999999999999999988775

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=94.23  E-value=0.054  Score=47.11  Aligned_cols=34  Identities=32%  Similarity=0.394  Sum_probs=31.0

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +|+++|.|+++.+|+.++..|.++|++|+++.|.
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~   34 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLG   34 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999998765

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK05993 short chain dehydrogenase; Provisional

Probab=94.22  E-value=0.063  Score=48.03  Aligned_cols=35  Identities=20%  Similarity=0.130  Sum_probs=31.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+|+++|.|+++-+|+.+++.|+++|++|.++.|+
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~   37 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRK   37 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            36889999998878999999999999999998775

>PLN02206 UDP-glucuronate decarboxylase

Probab=94.22  E-value=0.11  Score=50.50  Aligned_cols=36  Identities=25%  Similarity=0.242  Sum_probs=32.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      .-++++|+|.|+.|.||+.++..|.++|.+|.++.+
T Consensus       116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~  151 (442)
T PLN02206        116 KRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDN  151 (442)
T ss_pred             ccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeC
Confidence            347899999999999999999999999999888754

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.20  E-value=0.081  Score=46.02  Aligned_cols=35  Identities=23%  Similarity=0.237  Sum_probs=31.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      +++|+++|.|+++.+|+.++..|+++|++|.++.+
T Consensus         3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~   37 (253)
T PRK08642          3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH   37 (253)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence            57899999999988999999999999999877643

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=94.20  E-value=0.084  Score=55.97  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=32.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      -.||+|+|||+|-+ |.++|..|+++|.+|+|+.+.
T Consensus       304 ~~gkkVaVIGsGPA-GLsaA~~Lar~G~~VtVfE~~  338 (944)
T PRK12779        304 AVKPPIAVVGSGPS-GLINAYLLAVEGFPVTVFEAF  338 (944)
T ss_pred             CCCCeEEEECCCHH-HHHHHHHHHHCCCeEEEEeeC
Confidence            36999999999999 999999999999999999654

>PRK09135 pteridine reductase; Provisional

Probab=94.18  E-value=0.079  Score=45.81  Aligned_cols=36  Identities=19%  Similarity=0.138  Sum_probs=32.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++++++|.|+++.+|+.+++.|+++|++|.++.|+
T Consensus         4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~   39 (249)
T PRK09135          4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHR   39 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            467899999999999999999999999999888764

>PRK14030 glutamate dehydrogenase; Provisional

Probab=94.18  E-value=0.14  Score=49.82  Aligned_cols=51  Identities=22%  Similarity=0.260  Sum_probs=42.1

Q ss_pred             cccCCHHHHHHH----HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEE
Q 024306          115 FIPCTPKGCIEL----LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  166 (269)
Q Consensus       115 ~~p~t~~g~~~~----l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~  166 (269)
                      -.+.|++|++..    +++.+.+++|++|+|=|.|.+ |..+|+.|.+.||+|..+
T Consensus       203 r~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnV-G~~aA~~L~e~GakvVav  257 (445)
T PRK14030        203 RPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNV-AWGAATKATELGAKVVTI  257 (445)
T ss_pred             CCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEE
Confidence            346799887544    456788999999999999885 999999999999996663

>PRK08303 short chain dehydrogenase; Provisional

Probab=94.18  E-value=0.081  Score=48.50  Aligned_cols=38  Identities=26%  Similarity=0.218  Sum_probs=33.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||.++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~   41 (305)
T PRK08303          4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRS   41 (305)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            34789999999998777999999999999999988764

>PRK06198 short chain dehydrogenase; Provisional

Probab=94.17  E-value=0.069  Score=46.81  Aligned_cols=37  Identities=22%  Similarity=0.244  Sum_probs=33.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~  169 (269)
                      .+++|+++|.|+++.+|+.+++.|.++|++ |.++.|.
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~   40 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN   40 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence            468999999999988999999999999998 8888765

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=94.17  E-value=0.088  Score=48.54  Aligned_cols=35  Identities=20%  Similarity=0.315  Sum_probs=31.0

Q ss_pred             CCCCccceEEEEcC---CcccHHHHHHHHHhCCCEEEEE
Q 024306          131 GVEIMGKNAVVIGR---SNIVGLPTSLLLQRHHATVSIV  166 (269)
Q Consensus       131 ~~~l~gk~v~ViG~---gg~vg~~~a~~L~~~ga~Vti~  166 (269)
                      ..+++||.++|-|+   +|+ |+++|+.|+++||+|.+.
T Consensus         4 ~~~l~gk~alITGa~~s~GI-G~a~A~~la~~Ga~Vv~~   41 (303)
T PLN02730          4 PIDLRGKRAFIAGVADDNGY-GWAIAKALAAAGAEILVG   41 (303)
T ss_pred             CcCCCCCEEEEeCCCCCCcH-HHHHHHHHHHCCCEEEEE
Confidence            35689999999999   665 999999999999998883

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.15  E-value=0.12  Score=50.32  Aligned_cols=120  Identities=17%  Similarity=0.131  Sum_probs=63.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCc-CCCcEEEEeeecCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWL-KPGAVVLDVGTCPVD  213 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~-~~g~vViDv~~~~~~  213 (269)
                      .||+|+|+|.|.. |+++++.|. +|++|++.+.........-+..+..+  .+. +  +.+.+ ....+|+-=|+++..
T Consensus         5 ~~~~v~v~G~G~s-G~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~~~~--~~~-~--~~~~~~~~d~vV~SPgI~~~~   77 (454)
T PRK01368          5 TKQKIGVFGLGKT-GISVYEELQ-NKYDVIVYDDLKANRDIFEELYSKNA--IAA-L--SDSRWQNLDKIVLSPGIPLTH   77 (454)
T ss_pred             CCCEEEEEeecHH-HHHHHHHHh-CCCEEEEECCCCCchHHHHhhhcCce--ecc-C--ChhHhhCCCEEEECCCCCCCC
Confidence            5899999999998 999999998 59999999854322211000001111  110 0  00111 112333333333210


Q ss_pred             CCC----CCCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHH
Q 024306          214 DPS----CEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA  262 (269)
Q Consensus       214 ~~~----~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~  262 (269)
                       |.    ...+-++++++++-........+.-|-|=-|.=|+.-|+.++++..
T Consensus        78 -p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~  129 (454)
T PRK01368         78 -EIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSN  129 (454)
T ss_pred             -HHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence             00    0012257777776321111112334567889999999999888753

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.14  E-value=0.077  Score=49.15  Aligned_cols=36  Identities=28%  Similarity=0.159  Sum_probs=32.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++||+++|.|++|.+|+.++..|.++|++|+++.|.
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~   37 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLD   37 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCC
Confidence            478999999998888999999999999999887654

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.12  E-value=0.17  Score=47.28  Aligned_cols=76  Identities=22%  Similarity=0.237  Sum_probs=50.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHh----hhcC-CCCEEEeccC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPE----QITS-EADIVIAAAG  188 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l~----~~~~-~aDiVIsAtg  188 (269)
                      -.|.+|+|.|+|+ +|..+++++..+|+ .|+++.++.                   .++.    +... .+|+||.++|
T Consensus       190 ~~g~~VlV~G~G~-vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G  268 (371)
T cd08281         190 RPGQSVAVVGLGG-VGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAG  268 (371)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCC
Confidence            3689999999865 59999999999999 577664331                   1111    1111 4799999998


Q ss_pred             CCCccc--CCCcCCCcEEEEeeec
Q 024306          189 VANLVR--GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       189 ~p~~i~--~~~~~~g~vViDv~~~  210 (269)
                      .+..+.  -+.++++-.++-++..
T Consensus       269 ~~~~~~~~~~~l~~~G~iv~~G~~  292 (371)
T cd08281         269 SVPALETAYEITRRGGTTVTAGLP  292 (371)
T ss_pred             ChHHHHHHHHHHhcCCEEEEEccC
Confidence            754332  2346676666667653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK07577 short chain dehydrogenase; Provisional

Probab=94.11  E-value=0.09  Score=45.24  Aligned_cols=35  Identities=23%  Similarity=0.231  Sum_probs=31.9

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+|+++|.|+++.+|+.+++.|+++|++|.++.|+
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~   36 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARS   36 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            57899999999999999999999999999888775

>PRK08267 short chain dehydrogenase; Provisional

Probab=94.10  E-value=0.064  Score=47.15  Aligned_cols=33  Identities=21%  Similarity=0.241  Sum_probs=30.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      |+++|+|+++.+|+.++..|+++|++|.++.|+
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~   34 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDIN   34 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            689999999999999999999999999988764

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=94.09  E-value=0.22  Score=44.90  Aligned_cols=91  Identities=14%  Similarity=0.082  Sum_probs=57.9

Q ss_pred             CCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCH----h
Q 024306          118 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNP----E  174 (269)
Q Consensus       118 ~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l----~  174 (269)
                      +.+..++..++.. .--.|.+++|.|+++.+|.++++++..+|++|+++.+..                   .++    .
T Consensus       123 ~~~~ta~~~~~~~-~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~  201 (324)
T cd08292         123 AMPLSALMLLDFL-GVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVR  201 (324)
T ss_pred             ccHHHHHHHHHhh-CCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHH
Confidence            3334444444332 223689999999988889999999999999876664321                   111    1


Q ss_pred             hhc--CCCCEEEeccCCCCc-ccCCCcCCCcEEEEeee
Q 024306          175 QIT--SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  209 (269)
Q Consensus       175 ~~~--~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~  209 (269)
                      +..  +..|+|++++|.+.. -.-..++++..+++++.
T Consensus       202 ~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~v~~g~  239 (324)
T cd08292         202 EAAGGAPISVALDSVGGKLAGELLSLLGEGGTLVSFGS  239 (324)
T ss_pred             HHhCCCCCcEEEECCCChhHHHHHHhhcCCcEEEEEec
Confidence            222  248999988886432 11234667777888874

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=94.09  E-value=0.056  Score=50.67  Aligned_cols=78  Identities=18%  Similarity=0.217  Sum_probs=53.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC---CEEEEEeCCC---------------CCHhhh-cCCCCEEEeccCCCC--cc
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHH---ATVSIVHALT---------------KNPEQI-TSEADIVIAAAGVAN--LV  193 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~g---a~Vti~~~~t---------------~~l~~~-~~~aDiVIsAtg~p~--~i  193 (269)
                      ++.+|.|+|++|.+|+-+.++|.++.   .++..+.+..               .++.+. ..++|+++.|+|..-  -+
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~s~~~   82 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREASAAY   82 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHHHHHH
Confidence            45689999999999999999999852   4666554431               012222 267899999997421  23


Q ss_pred             cCCCcCCCcEEEEeeecCC
Q 024306          194 RGSWLKPGAVVLDVGTCPV  212 (269)
Q Consensus       194 ~~~~~~~g~vViDv~~~~~  212 (269)
                      -++..+.|+.|||.+-...
T Consensus        83 ~~~~~~~g~~VIDlS~~fR  101 (336)
T PRK08040         83 AEEATNAGCLVIDSSGLFA  101 (336)
T ss_pred             HHHHHHCCCEEEECChHhc
Confidence            3344567999999986543

>PRK08328 hypothetical protein; Provisional

Probab=94.05  E-value=0.081  Score=46.81  Aligned_cols=36  Identities=14%  Similarity=0.340  Sum_probs=31.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  169 (269)
                      .+++++|+|+|+||. |.+++..|+..|. ++++++..
T Consensus        24 ~L~~~~VlIiG~GGl-Gs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         24 KLKKAKVAVVGVGGL-GSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             HHhCCcEEEECCCHH-HHHHHHHHHHcCCCEEEEEcCC
Confidence            367899999999997 9999999999997 69998643

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=94.02  E-value=0.17  Score=47.03  Aligned_cols=52  Identities=15%  Similarity=-0.001  Sum_probs=36.5

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      ||....++..+.+...--.|.+|+|.|++|.||..+++++..+|++|+.+.+
T Consensus       140 ~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~  191 (348)
T PLN03154        140 GMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG  191 (348)
T ss_pred             ccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcC
Confidence            3333344444544333347999999999777799999999999998766543

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.01  E-value=0.13  Score=52.06  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=31.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .||+|+|||+|-+ |..+|..|+++|++|+++.+.
T Consensus       309 ~~kkVaIIG~Gpa-Gl~aA~~L~~~G~~Vtv~e~~  342 (639)
T PRK12809        309 RSEKVAVIGAGPA-GLGCADILARAGVQVDVFDRH  342 (639)
T ss_pred             CCCEEEEECcCHH-HHHHHHHHHHcCCcEEEEeCC
Confidence            5999999999998 999999999999999999644

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=94.01  E-value=0.12  Score=47.38  Aligned_cols=51  Identities=25%  Similarity=0.390  Sum_probs=40.1

Q ss_pred             EEEEcCCcccHHHHHHHHHhCC--CEEEEEeCCC-------------------------CCHhhhcCCCCEEEeccCCCC
Q 024306          139 AVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALT-------------------------KNPEQITSEADIVIAAAGVAN  191 (269)
Q Consensus       139 v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~t-------------------------~~l~~~~~~aDiVIsAtg~p~  191 (269)
                      +.|||+|. ||.+++..|+.+|  .++++++...                         .+ .+.+++||+||.+.|.|.
T Consensus         1 i~iiGaG~-VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~   78 (300)
T cd00300           1 ITIIGAGN-VGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPR   78 (300)
T ss_pred             CEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCC
Confidence            47999988 5999999999988  4688886531                         12 457889999999999653

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=93.99  E-value=0.16  Score=47.37  Aligned_cols=56  Identities=11%  Similarity=0.194  Sum_probs=41.8

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC-------EEEEEeCCC--------------------------CCHhhhcCCCCE
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHA-------TVSIVHALT--------------------------KNPEQITSEADI  182 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga-------~Vti~~~~t--------------------------~~l~~~~~~aDi  182 (269)
                      -.+|.|||++|.||..++..|..++.       ++.+.+...                          .+..+.+++||+
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi   81 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW   81 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence            46899999955579999999988773       577765421                          123467899999


Q ss_pred             EEeccCCCC
Q 024306          183 VIAAAGVAN  191 (269)
Q Consensus       183 VIsAtg~p~  191 (269)
                      ||.+.|.|.
T Consensus        82 vvitaG~~~   90 (322)
T cd01338          82 ALLVGAKPR   90 (322)
T ss_pred             EEEeCCCCC
Confidence            999998643

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=93.98  E-value=0.091  Score=46.20  Aligned_cols=36  Identities=25%  Similarity=0.252  Sum_probs=32.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      +++||+++|.|+++-+|+++++.|+++|++|..+++
T Consensus         7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~   42 (253)
T PRK08993          7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINI   42 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecC
Confidence            578999999999988899999999999999887654

>PRK06483 dihydromonapterin reductase; Provisional

Probab=93.96  E-value=0.08  Score=45.84  Aligned_cols=35  Identities=14%  Similarity=0.167  Sum_probs=31.4

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +|+++|.|+++-+|+++++.|+++|++|.++.|+.
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~   36 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTH   36 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCc
Confidence            57899999988889999999999999999887754

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=93.95  E-value=0.11  Score=48.37  Aligned_cols=63  Identities=11%  Similarity=0.129  Sum_probs=46.5

Q ss_pred             HHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhhcCCCCEEEeccCCCCc---c-c--CCCcCCCcE
Q 024306          149 GLPTSLLLQRHHATVSIVHALT-------------------KNPEQITSEADIVIAAAGVANL---V-R--GSWLKPGAV  203 (269)
Q Consensus       149 g~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~~~aDiVIsAtg~p~~---i-~--~~~~~~g~v  203 (269)
                      |+++|..|++.|.+|++.+++.                   .+..+..+++|+||+.++.+.-   + .  .+.+++|++
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaI  111 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAV  111 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCE
Confidence            7788888888888888886541                   2456788999999999986441   2 1  234688999


Q ss_pred             EEEeeecC
Q 024306          204 VLDVGTCP  211 (269)
Q Consensus       204 ViDv~~~~  211 (269)
                      |||.+...
T Consensus       112 VID~STIs  119 (341)
T TIGR01724       112 ICNTCTVS  119 (341)
T ss_pred             EEECCCCC
Confidence            99998653

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=93.93  E-value=0.33  Score=43.08  Aligned_cols=89  Identities=21%  Similarity=0.223  Sum_probs=57.3

Q ss_pred             HHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CC----Hhhhc-
Q 024306          122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KN----PEQIT-  177 (269)
Q Consensus       122 g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~----l~~~~-  177 (269)
                      .+...+.+...--+|++++|.|+++.+|..++.++..+|++|+++.++.                   .+    +.+.. 
T Consensus       131 ~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  210 (325)
T cd08253         131 TAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQAGADAVFNYRAEDLADRILAATA  210 (325)
T ss_pred             HHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHHcC
Confidence            3344444433334789999999877779999999999999987775421                   11    11222 


Q ss_pred             -CCCCEEEeccCCCCc-ccCCCcCCCcEEEEeeec
Q 024306          178 -SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       178 -~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~~  210 (269)
                       +..|++++++|.... ...++++++..+++++..
T Consensus       211 ~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~~~~  245 (325)
T cd08253         211 GQGVDVIIEVLANVNLAKDLDVLAPGGRIVVYGSG  245 (325)
T ss_pred             CCceEEEEECCchHHHHHHHHhhCCCCEEEEEeec
Confidence             347888888775432 223456666677788764

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=93.93  E-value=0.089  Score=45.86  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=33.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++|+++|.|+++.+|..+++.|+++|++|.++.|+
T Consensus        10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~   45 (247)
T PRK08945         10 LKDRIILVTGAGDGIGREAALTYARHGATVILLGRT   45 (247)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence            589999999999999999999999999999888765

>PRK06128 oxidoreductase; Provisional

Probab=93.93  E-value=0.093  Score=47.60  Aligned_cols=36  Identities=19%  Similarity=0.410  Sum_probs=32.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      .++||+++|.|+++-+|+.++..|+++|++|.++.+
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~   87 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYL   87 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence            378999999999888999999999999999887643

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.93  E-value=0.09  Score=46.96  Aligned_cols=36  Identities=17%  Similarity=0.264  Sum_probs=30.6

Q ss_pred             CccceEEEEcCCc--ccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSN--IVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg--~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++||.++|.|+|+  -+|+++++.|+++|++|.++.+.
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence            6799999999872  34999999999999999887654

>PRK06444 prephenate dehydrogenase; Provisional

Probab=93.91  E-value=0.12  Score=44.85  Aligned_cols=56  Identities=13%  Similarity=0.254  Sum_probs=41.2

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhhcCCCCEEEeccCCCC---cccCCCcCCCcEEEEeee
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVAN---LVRGSWLKPGAVVLDVGT  209 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~aDiVIsAtg~p~---~i~~~~~~~g~vViDv~~  209 (269)
                      +++|||+.|-+|+.++..|.+.|..|+            +++||+||-|++...   .+..  +  ..+|+|++.
T Consensus         2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~------------~~~~DlVilavPv~~~~~~i~~--~--~~~v~Dv~S   60 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSILDDNGLGVY------------IKKADHAFLSVPIDAALNYIES--Y--DNNFVEISS   60 (197)
T ss_pred             EEEEEecCCcHHHHHHHHHHhCCCEEE------------ECCCCEEEEeCCHHHHHHHHHH--h--CCeEEeccc
Confidence            689999944459999999999998886            468999999998422   2221  1  136778885

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.90  E-value=0.23  Score=47.54  Aligned_cols=75  Identities=23%  Similarity=0.300  Sum_probs=54.4

Q ss_pred             CCccceEEEEcCC---------cccHHHHHHHHHhCCCEEEEEeCCC-----------CCHhhhcCCCCEEEeccCCCCc
Q 024306          133 EIMGKNAVVIGRS---------NIVGLPTSLLLQRHHATVSIVHALT-----------KNPEQITSEADIVIAAAGVANL  192 (269)
Q Consensus       133 ~l~gk~v~ViG~g---------g~vg~~~a~~L~~~ga~Vti~~~~t-----------~~l~~~~~~aDiVIsAtg~p~~  192 (269)
                      +++|++|+|+|-+         .+-+..++..|.++|++|.+....-           .++.+.+++||+||-.|..+.+
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~~~~  389 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDHDEF  389 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCCHHH
Confidence            5789999999932         1226889999999999999986541           3566788999999999998766


Q ss_pred             ccCC--CcC---CCcEEEEe
Q 024306          193 VRGS--WLK---PGAVVLDV  207 (269)
Q Consensus       193 i~~~--~~~---~g~vViDv  207 (269)
                      -..+  .++   ...+|+|.
T Consensus       390 ~~~~~~~~~~~~~~~~v~D~  409 (411)
T TIGR03026       390 KDLDLEKIKDLMKGKVVVDT  409 (411)
T ss_pred             hccCHHHHHHhcCCCEEEeC
Confidence            3222  222   13478884

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK06180 short chain dehydrogenase; Provisional

Probab=93.89  E-value=0.078  Score=47.35  Aligned_cols=35  Identities=14%  Similarity=-0.082  Sum_probs=31.6

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+|+++|.|+++-+|+.+++.|+++|++|.++.|+
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~   37 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRS   37 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCC
Confidence            46889999998889999999999999999988764

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=93.86  E-value=0.1  Score=46.24  Aligned_cols=34  Identities=26%  Similarity=0.363  Sum_probs=29.6

Q ss_pred             CCccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEe
Q 024306          133 EIMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVH  167 (269)
Q Consensus       133 ~l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~  167 (269)
                      +++||.++|.|+|   |. |+++++.|+++|++|.++.
T Consensus         3 ~l~~k~~lItGas~~~GI-G~aia~~la~~G~~v~~~~   39 (258)
T PRK07370          3 DLTGKKALVTGIANNRSI-AWGIAQQLHAAGAELGITY   39 (258)
T ss_pred             ccCCcEEEEeCCCCCCch-HHHHHHHHHHCCCEEEEEe
Confidence            4689999999974   65 9999999999999988764

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.85  E-value=0.1  Score=46.34  Aligned_cols=36  Identities=19%  Similarity=0.329  Sum_probs=30.7

Q ss_pred             CccceEEEEcCCc--ccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSN--IVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg--~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++||.++|.|+++  -+|+++++.|+++|++|.++.+.
T Consensus         6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~   43 (260)
T PRK06603          6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS   43 (260)
T ss_pred             cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc
Confidence            6789999999973  24999999999999999887654

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=93.85  E-value=0.17  Score=46.99  Aligned_cols=76  Identities=25%  Similarity=0.204  Sum_probs=51.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCCC-------------------CCH----hhhc--CCCCEEEecc
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT-------------------KNP----EQIT--SEADIVIAAA  187 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t-------------------~~l----~~~~--~~aDiVIsAt  187 (269)
                      -.|++|+|.|+|+ +|..+++++...|++ |+.+.+..                   .+.    .+..  +..|+||.++
T Consensus       175 ~~g~~VlV~G~g~-vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~  253 (358)
T TIGR03451       175 KRGDSVAVIGCGG-VGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAV  253 (358)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence            4689999999865 599999999999985 76664321                   121    1222  2489999999


Q ss_pred             CCCCccc--CCCcCCCcEEEEeeec
Q 024306          188 GVANLVR--GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       188 g~p~~i~--~~~~~~g~vViDv~~~  210 (269)
                      |.+..+.  -+.++++-.++-+|..
T Consensus       254 g~~~~~~~~~~~~~~~G~iv~~G~~  278 (358)
T TIGR03451       254 GRPETYKQAFYARDLAGTVVLVGVP  278 (358)
T ss_pred             CCHHHHHHHHHHhccCCEEEEECCC
Confidence            9754332  2356777777777754

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=93.85  E-value=0.24  Score=44.56  Aligned_cols=91  Identities=16%  Similarity=0.108  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------------C--C----Hhhh
Q 024306          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------K--N----PEQI  176 (269)
Q Consensus       120 ~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------------~--~----l~~~  176 (269)
                      +..+...+.+....-.|.+++|.|+++.+|.++++.+..+|+.|++..+..                 .  +    +...
T Consensus       123 ~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  202 (323)
T cd05282         123 PLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKALGADEVIDSSPEDLAQRVKEA  202 (323)
T ss_pred             HHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHhcCCCEEecccchhHHHHHHHH
Confidence            333344444444445788999999988889999999999999877654321                 0  1    1112


Q ss_pred             c--CCCCEEEeccCCCCcc-cCCCcCCCcEEEEeeec
Q 024306          177 T--SEADIVIAAAGVANLV-RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       177 ~--~~aDiVIsAtg~p~~i-~~~~~~~g~vViDv~~~  210 (269)
                      .  +..|++++.+|.+... ..++++++..+++++..
T Consensus       203 ~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~  239 (323)
T cd05282         203 TGGAGARLALDAVGGESATRLARSLRPGGTLVNYGLL  239 (323)
T ss_pred             hcCCCceEEEECCCCHHHHHHHHhhCCCCEEEEEccC
Confidence            2  3579999988864321 12457777778888754

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=93.84  E-value=0.089  Score=46.14  Aligned_cols=34  Identities=24%  Similarity=0.198  Sum_probs=30.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +|+++|.|+++.+|+.++..|+++|++|.++.++
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~   35 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADIN   35 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            6889999999999999999999999999888764

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.82  E-value=0.14  Score=45.72  Aligned_cols=52  Identities=19%  Similarity=0.189  Sum_probs=40.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC---CEEEEEeCCC---------------CCHhhhcCCCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHH---ATVSIVHALT---------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~g---a~Vti~~~~t---------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      .++.|||.|.+ |..++..|.+.|   ..|++++|+.               .+..+.+.++|+||-+++.
T Consensus         3 m~I~iIG~G~m-G~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~   72 (267)
T PRK11880          3 KKIGFIGGGNM-ASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP   72 (267)
T ss_pred             CEEEEEechHH-HHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH
Confidence            46999999886 999999999888   5788887752               2334557789999988863

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=93.81  E-value=0.18  Score=46.84  Aligned_cols=53  Identities=28%  Similarity=0.365  Sum_probs=40.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC--------------------------CCHhhhcCCCCEEEeccC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT--------------------------KNPEQITSEADIVIAAAG  188 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t--------------------------~~l~~~~~~aDiVIsAtg  188 (269)
                      ++|.|||+|+ ||.++++.|..++.  ++.+++...                          .+ .+.+++||+||-+.|
T Consensus         1 ~KVaviGaG~-VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~-y~~~~~aDiVvitAG   78 (313)
T COG0039           1 MKVAVIGAGN-VGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGD-YEDLKGADIVVITAG   78 (313)
T ss_pred             CeEEEECCCh-HHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCC-hhhhcCCCEEEEeCC
Confidence            4799999966 59999999988873  677775431                          11 567899999998878


Q ss_pred             CCC
Q 024306          189 VAN  191 (269)
Q Consensus       189 ~p~  191 (269)
                      .|.
T Consensus        79 ~pr   81 (313)
T COG0039          79 VPR   81 (313)
T ss_pred             CCC
Confidence            543

>PRK07831 short chain dehydrogenase; Provisional

Probab=93.81  E-value=0.099  Score=46.06  Aligned_cols=36  Identities=22%  Similarity=0.190  Sum_probs=30.6

Q ss_pred             CccceEEEEcCCc-ccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSN-IVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg-~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++|+++|.|++| -+|+.+++.|+++|++|+++.++
T Consensus        15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~   51 (262)
T PRK07831         15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIH   51 (262)
T ss_pred             cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCC
Confidence            5789999999853 35999999999999999988654

>PLN02583 cinnamoyl-CoA reductase

Probab=93.81  E-value=0.1  Score=47.37  Aligned_cols=36  Identities=22%  Similarity=0.122  Sum_probs=32.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      +-++|+|+|.|++|.+|+.++..|.++|++|+.+.|
T Consensus         3 ~~~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R   38 (297)
T PLN02583          3 DESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQ   38 (297)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEc
Confidence            456889999999999999999999999999988765

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.80  E-value=0.1  Score=46.98  Aligned_cols=35  Identities=14%  Similarity=0.219  Sum_probs=30.6

Q ss_pred             CccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++||.++|.|++   |+ |+++|+.|+++|++|.++.|+
T Consensus         3 l~~k~~lItGas~~~GI-G~aiA~~la~~G~~Vil~~r~   40 (274)
T PRK08415          3 MKGKKGLIVGVANNKSI-AYGIAKACFEQGAELAFTYLN   40 (274)
T ss_pred             cCCcEEEEECCCCCCCH-HHHHHHHHHHCCCEEEEEecC
Confidence            579999999984   65 999999999999999888654

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=93.74  E-value=0.17  Score=42.20  Aligned_cols=74  Identities=22%  Similarity=0.236  Sum_probs=48.9

Q ss_pred             ccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC---------------------------CCCHhhhcCCCCEEEec
Q 024306          135 MGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL---------------------------TKNPEQITSEADIVIAA  186 (269)
Q Consensus       135 ~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~---------------------------t~~l~~~~~~aDiVIsA  186 (269)
                      +|++++++|-+ +-|.+.++..|...|.+++++...                           +.++.+.+++||+|++.
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            57888888853 345888888888888888877432                           23667899999999855


Q ss_pred             cCC----C----------Cc-ccCCCc---CCCcEEEEee
Q 024306          187 AGV----A----------NL-VRGSWL---KPGAVVLDVG  208 (269)
Q Consensus       187 tg~----p----------~~-i~~~~~---~~g~vViDv~  208 (269)
                      .=.    .          .+ ++.+.+   +++++++-..
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L  120 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL  120 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence            422    0          13 565554   4677776555

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=93.69  E-value=0.15  Score=47.27  Aligned_cols=33  Identities=18%  Similarity=0.153  Sum_probs=28.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      -++|.|||+|-+ |+.+|..++.-|..|++...+
T Consensus         3 i~kv~ViGaG~M-G~gIA~~~A~~G~~V~l~D~~   35 (307)
T COG1250           3 IKKVAVIGAGVM-GAGIAAVFALAGYDVVLKDIS   35 (307)
T ss_pred             ccEEEEEcccch-hHHHHHHHhhcCCceEEEeCC
Confidence            378999999887 999999999966899999655

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=93.67  E-value=0.21  Score=46.20  Aligned_cols=54  Identities=30%  Similarity=0.445  Sum_probs=41.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC----------------------------CCHhhhcCCCCEEEec
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT----------------------------KNPEQITSEADIVIAA  186 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t----------------------------~~l~~~~~~aDiVIsA  186 (269)
                      .+|.|+|++|.||..++..|+..|.  +|+++.+..                            .+ .+.+++||+||.+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEe
Confidence            4799999966679999999999885  488776521                            12 2458999999999


Q ss_pred             cCCCC
Q 024306          187 AGVAN  191 (269)
Q Consensus       187 tg~p~  191 (269)
                      .|.|.
T Consensus        80 ag~p~   84 (309)
T cd05294          80 AGVPR   84 (309)
T ss_pred             cCCCC
Confidence            99654

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.66  E-value=0.15  Score=48.28  Aligned_cols=72  Identities=18%  Similarity=0.196  Sum_probs=50.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCC-------CEEEEEeCC---------------------------------CCCHhh
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHH-------ATVSIVHAL---------------------------------TKNPEQ  175 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~g-------a~Vti~~~~---------------------------------t~~l~~  175 (269)
                      -.+|.|||+|.- |.++|..|.+.|       .+|++..++                                 +.++.+
T Consensus        11 ~~ki~ViGaG~w-GtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e   89 (365)
T PTZ00345         11 PLKVSVIGSGNW-GSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE   89 (365)
T ss_pred             CCeEEEECCCHH-HHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence            358999999886 999999999886       577775332                                 235667


Q ss_pred             hcCCCCEEEeccCCCC---c---ccCC-CcCCCcEEEEee
Q 024306          176 ITSEADIVIAAAGVAN---L---VRGS-WLKPGAVVLDVG  208 (269)
Q Consensus       176 ~~~~aDiVIsAtg~p~---~---i~~~-~~~~g~vViDv~  208 (269)
                      .+++||+||-|++...   .   +.+. .++++.++|-+.
T Consensus        90 av~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~a  129 (365)
T PTZ00345         90 AVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLT  129 (365)
T ss_pred             HHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEe
Confidence            8899999999998532   1   3321 355565666554

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.66  E-value=0.18  Score=48.26  Aligned_cols=108  Identities=15%  Similarity=0.171  Sum_probs=64.2

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHh--------------hhcCCCCEEEeccCCCC--cccCCCc
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPE--------------QITSEADIVIAAAGVAN--LVRGSWL  198 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~--------------~~~~~aDiVIsAtg~p~--~i~~~~~  198 (269)
                      +.++|+|+|-|++ |+++|+.|.++|++|+.+++....+.              ...+++|++|-+.|.+.  .+=.+-.
T Consensus         2 ~~~~i~iiGlG~~-G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~   80 (418)
T PRK00683          2 GLQRVVVLGLGVT-GKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAI   80 (418)
T ss_pred             CCCeEEEEEECHH-HHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHH
Confidence            3578999999998 99999999999999999886532111              11356788887766431  1111112


Q ss_pred             CCCcEEEEeeecCCCCCCCCCCceeecccchHHHh-hH-cceecccCCcccHHHHHHHHHHHHHHH
Q 024306          199 KPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAM-RL-ASVITPVPGGVGPMTVAMLLSNTLDSA  262 (269)
Q Consensus       199 ~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~-~~-~~~~tpvpgGvGp~T~~mLl~n~v~a~  262 (269)
                      +.|..                   ++.|.++.... .. .....-|-|=.|.=|+.-|+.++++..
T Consensus        81 ~~g~~-------------------vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~  127 (418)
T PRK00683         81 ASHIP-------------------VVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRL  127 (418)
T ss_pred             HCCCc-------------------EEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHc
Confidence            33432                   22222211100 00 011223457788889999988887653

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=93.65  E-value=0.092  Score=49.24  Aligned_cols=75  Identities=20%  Similarity=0.212  Sum_probs=50.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhC-CCEEEE-EeCCCC--CH------------------h-hhcCCCCEEEeccCCC-C-
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRH-HATVSI-VHALTK--NP------------------E-QITSEADIVIAAAGVA-N-  191 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~-ga~Vti-~~~~t~--~l------------------~-~~~~~aDiVIsAtg~p-~-  191 (269)
                      .+|.|+|++|.+|+.++..|.++ +.+++. +.+...  .+                  . ....++|+|+.|++.. + 
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~~   82 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVSM   82 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHHH
Confidence            58999999888899999998876 567544 432210  01                  0 1345789999999842 1 


Q ss_pred             cccCCCcCCCcEEEEeeecC
Q 024306          192 LVRGSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       192 ~i~~~~~~~g~vViDv~~~~  211 (269)
                      -+-....+.|..|||.+-..
T Consensus        83 ~~v~~a~~aG~~VID~S~~f  102 (343)
T PRK00436         83 DLAPQLLEAGVKVIDLSADF  102 (343)
T ss_pred             HHHHHHHhCCCEEEECCccc
Confidence            13334456799999998554

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=93.65  E-value=0.16  Score=46.49  Aligned_cols=51  Identities=24%  Similarity=0.407  Sum_probs=38.8

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHhhhcCCCCEEEeccCCCC
Q 024306          139 AVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAGVAN  191 (269)
Q Consensus       139 v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~aDiVIsAtg~p~  191 (269)
                      |.|||+|. ||..++..|+.++. +|++++...                          .+ .+.+++||+||.++|.|.
T Consensus         1 I~IIGaG~-vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit~g~p~   78 (300)
T cd01339           1 ISIIGAGN-VGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVITAGIPR   78 (300)
T ss_pred             CEEECCCH-HHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEecCCCC
Confidence            57999966 49999999988775 888886431                          23 355899999999888653

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=93.64  E-value=0.15  Score=47.25  Aligned_cols=53  Identities=21%  Similarity=0.249  Sum_probs=40.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC--------------------C-----CHhhhcCCCCEEEeccCCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT--------------------K-----NPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t--------------------~-----~l~~~~~~aDiVIsAtg~p  190 (269)
                      ||.|||+|. ||.++|+.|..++.  ++.+++...                    .     .-.+.+++|||||-+.|.|
T Consensus         1 Ki~IIGaG~-VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~   79 (307)
T cd05290           1 KLVVIGAGH-VGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPS   79 (307)
T ss_pred             CEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCC
Confidence            589999977 59999999988884  577775431                    0     1146789999999999964


Q ss_pred             C
Q 024306          191 N  191 (269)
Q Consensus       191 ~  191 (269)
                      .
T Consensus        80 ~   80 (307)
T cd05290          80 I   80 (307)
T ss_pred             C
Confidence            3

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=93.62  E-value=0.14  Score=52.68  Aligned_cols=32  Identities=19%  Similarity=0.149  Sum_probs=28.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|.|||+|-+ |..+|..++..|..|++....
T Consensus       314 ~~v~ViGaG~m-G~gIA~~~a~~G~~V~l~d~~  345 (715)
T PRK11730        314 KQAAVLGAGIM-GGGIAYQSASKGVPVIMKDIN  345 (715)
T ss_pred             ceEEEECCchh-HHHHHHHHHhCCCeEEEEeCC
Confidence            67999999887 999999999999999999654

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=93.62  E-value=0.22  Score=45.66  Aligned_cols=89  Identities=13%  Similarity=0.017  Sum_probs=55.0

Q ss_pred             HHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhc--
Q 024306          121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQIT--  177 (269)
Q Consensus       121 ~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~--  177 (269)
                      ..++..+.+...--.|.+++|.|++|.+|..+++++..+|++|+.+.+...                     +..+.+  
T Consensus       137 ~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~  216 (338)
T cd08295         137 LTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKR  216 (338)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHH
Confidence            334445544333347999999999777899999999999998766543211                     111111  


Q ss_pred             ---CCCCEEEeccCCCCc-ccCCCcCCCcEEEEeee
Q 024306          178 ---SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  209 (269)
Q Consensus       178 ---~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~  209 (269)
                         ...|++++++|...+ -.-+.++++..++.+|.
T Consensus       217 ~~~~gvd~v~d~~g~~~~~~~~~~l~~~G~iv~~G~  252 (338)
T cd08295         217 YFPNGIDIYFDNVGGKMLDAVLLNMNLHGRIAACGM  252 (338)
T ss_pred             hCCCCcEEEEECCCHHHHHHHHHHhccCcEEEEecc
Confidence               246788877775222 12235667666667664

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
4a26_A	300	The Crystal Structure Of Leishmania Major N5,N10- M		1e-72
1dia_A	306	Human Methylenetetrahydrofolate Dehydrogenase Cyclo		4e-63
1a4i_A	301	Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE		5e-63
4a5o_A	286	Crystal Structure Of Pseudomonas Aeruginosa N5, N10		6e-62
3p2o_A	285	Crystal Structure Of Fold Bifunctional Protein From		1e-60
1b0a_A	288	5,10, Methylene-Tetrahydropholate DehydrogenaseCYCL		5e-59
3l07_A	285	Methylenetetrahydrofolate DehydrogenaseMETHENYLTETR		3e-53
4b4u_A	303	Crystal Structure Of Acinetobacter Baumannii N5, N1		7e-52
2c2x_A	281	Three Dimensional Structure Of Bifunctional Methyle		2e-49
3ngl_A	276	Crystal Structure Of Bifunctional 5,10-Methylenetet		2e-34
1edz_A	320	Structure Of The Nad-Dependent 5,10- Methylenetetra		4e-11

>pdb|4A26|A Chain A, The Crystal Structure Of Leishmania Major N5,N10- Methylenetetrahydrofolate DehydrogenaseCYCLOHYDROLASE Length = 300

Iteration: 1
 Score =  269 bits (688), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 138/266 (51%), Positives = 183/266 (68%), Gaps = 2/266 (0%)
Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           G+VPGLA I+VG+R DS+ YV+ K KA  EVG+ S   E  +  +++ +   +   N D 
Sbjct: 35  GRVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNNDP 94
Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
           + +GI+VQLPLP+HL+E + ++ +   KD D   P+N+G L  +GREP F PCT KG I 
Sbjct: 95  NCHGIIVQLPLPKHLNENRAIEKIHPHKDADALLPVNVGLLHYKGREPPFTPCTAKGVIV 154
Query: 126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQIT--SEADIV 183
           LL R G+E+ GK AVV+GRSNIVG P + LL + +ATV+IVH+ T   + I     ADIV
Sbjct: 155 LLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYLRTADIV 214
Query: 184 IAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP 243
           IAA G    V+G W+K GA V+DVGT PV DPS + GYRL+GDVC+EEA   A+ I+PVP
Sbjct: 215 IAAMGQPGYVKGEWIKEGAAVVDVGTTPVPDPSRKDGYRLVGDVCFEEAAARAAWISPVP 274
Query: 244 GGVGPMTVAMLLSNTLDSAKRAYGFT 269
           GGVGPMT+AMLL NTL++ K A G +
Sbjct: 275 GGVGPMTIAMLLENTLEAFKAALGVS 300

>pdb|1DIA|A Chain A, Human Methylenetetrahydrofolate Dehydrogenase Cyclohydrolase Complexed With Nadp And Inhibitor Ly249543 Length = 306

Iteration: 1
 Score =  237 bits (605), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 121/261 (46%), Positives = 175/261 (67%), Gaps = 2/261 (0%)
Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           G  P LA++ VG R DS  Y+  K+KA EE+GIK+   +     TE EV+  +++ N+DS
Sbjct: 33  GFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDS 92
Query: 66  SINGILVQLPLPQH--LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGC 123
           +++G LVQLPL     ++  ++++A++ EKDVDG   +N G LA       FIPCTPKGC
Sbjct: 93  TVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGC 152
Query: 124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIV 183
           +EL+  +GV I G++AVV+GRS IVG P   LL  ++ATV+  H+ T + ++  ++ DI+
Sbjct: 153 LELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDIL 212
Query: 184 IAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP 243
           + A G   +V+G W+KPGA+V+D G   V D     G +++GDV Y+EA   AS ITPVP
Sbjct: 213 VVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVP 272
Query: 244 GGVGPMTVAMLLSNTLDSAKR 264
           GGVGPMTVAML+ +T++SAKR
Sbjct: 273 GGVGPMTVAMLMQSTVESAKR 293

>pdb|1A4I|A Chain A, Human Tetrahydrofolate Dehydrogenase CYCLOHYDROLASE Length = 301

Iteration: 1
 Score =  237 bits (604), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 121/261 (46%), Positives = 175/261 (67%), Gaps = 2/261 (0%)
Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           G  P LA++ VG R DS  Y+  K+KA EE+GIK+   +     TE EV+  +++ N+DS
Sbjct: 33  GFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDS 92
Query: 66  SINGILVQLPLPQH--LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGC 123
           +++G LVQLPL     ++  ++++A++ EKDVDG   +N G LA       FIPCTPKGC
Sbjct: 93  TVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGC 152
Query: 124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIV 183
           +EL+  +GV I G++AVV+GRS IVG P   LL  ++ATV+  H+ T + ++  ++ DI+
Sbjct: 153 LELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNKGDIL 212
Query: 184 IAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP 243
           + A G   +V+G W+KPGA+V+D G   V D     G +++GDV Y+EA   AS ITPVP
Sbjct: 213 VVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVP 272
Query: 244 GGVGPMTVAMLLSNTLDSAKR 264
           GGVGPMTVAML+ +T++SAKR
Sbjct: 273 GGVGPMTVAMLMQSTVESAKR 293

>pdb|4A5O|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa N5, N10- Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase (Fold) Length = 286

Iteration: 1
 Score =  233 bits (595), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 129/260 (49%), Positives = 167/260 (64%), Gaps = 8/260 (3%)
Query: 7   KVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSS 66
           +VPGLAVILVG    SQ YV +K K CEEVG  S   +     ++D++L  +   N D +
Sbjct: 34  RVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPA 93
Query: 67  INGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIEL 126
           I+GILVQLPLP HLD   +L+ +  +KDVDGFHP NIG LA   R PL  PCTPKG + L
Sbjct: 94  IDGILVQLPLPAHLDASLLLERIHPDKDVDGFHPYNIGRLAQ--RMPLLRPCTPKGIMTL 151
Query: 127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAA 186
           L  +G ++ G +AVV+G SNIVG P +L L     TV++ H  T++     S AD+V+ A
Sbjct: 152 LASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRADLVVVA 211
Query: 187 AGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 246
           AG   LV+G W+K GA+V+DVG       + +   RL+GDV YE A + AS ITPVPGGV
Sbjct: 212 AGKPGLVKGEWIKEGAIVIDVGI------NRQADGRLVGDVEYEVAAQRASWITPVPGGV 265
Query: 247 GPMTVAMLLSNTLDSAKRAY 266
           GPMT A LL NTL +A+  +
Sbjct: 266 GPMTRACLLENTLHAAEHLH 285

>pdb|3P2O|A Chain A, Crystal Structure Of Fold Bifunctional Protein From Campylobacter Jejuni Length = 285

Iteration: 1
 Score =  229 bits (585), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 126/262 (48%), Positives = 173/262 (66%), Gaps = 7/262 (2%)
Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
           KS G    LAVILVG+   SQTYV++K KACEE GIKS+V    +  T++E+L  ++  N
Sbjct: 28  KSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELLALINTLN 87
Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
            D S++GILVQLPLP H+ +  IL+++   KDVDGFHP+N+G L + G E  F+PCTP G
Sbjct: 88  HDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNL-GLESGFLPCTPLG 146
Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
             +LL    +++ GK+AV+IG SNIVG P +  L    ATVS+ H  TK+    T +AD+
Sbjct: 147 VXKLLKAYEIDLEGKDAVIIGASNIVGRPXATXLLNAGATVSVCHIKTKDLSLYTRQADL 206
Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPV 242
           +I AAG  NL+R   +K G +V+DVG   ++        +++GDV +EE  + +S ITPV
Sbjct: 207 IIVAAGCVNLLRSDXVKEGVIVVDVGINRLESG------KIVGDVDFEEVSKKSSYITPV 260
Query: 243 PGGVGPMTVAMLLSNTLDSAKR 264
           PGGVGP T+A LL NT+ SAK 
Sbjct: 261 PGGVGPXTIAXLLENTVKSAKN 282

>pdb|1B0A|A Chain A, 5,10, Methylene-Tetrahydropholate DehydrogenaseCYCLOHYDROLASE FROM E COLI Length = 288

Iteration: 1
 Score =  224 bits (570), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 119/255 (46%), Positives = 160/255 (62%), Gaps = 8/255 (3%)
Query: 7   KVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSS 66
           + PGLAV+LVG    SQ YV +K KACEEVG  S   +  +  +E E+L  +   N D++
Sbjct: 32  RAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNT 91
Query: 67  INGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIEL 126
           I+GILVQLPLP  +D  K+L+ +  +KDVDGFHP N+G L  R   P   PCTP+G + L
Sbjct: 92  IDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRA--PRLRPCTPRGIVTL 149
Query: 127 LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAA 186
           L R  ++  G NAVVIG SNIVG P S+ L     T ++ H  TKN       AD++I A
Sbjct: 150 LERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVA 209
Query: 187 AGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV 246
            G    + G W+K GA+V+DVG   +++       +++GDV +E+A + AS ITPVPGGV
Sbjct: 210 VGKPGFIPGDWIKEGAIVIDVGINRLENG------KVVGDVVFEDAAKRASYITPVPGGV 263
Query: 247 GPMTVAMLLSNTLDS 261
           GPMTVA L+ NTL +
Sbjct: 264 GPMTVATLIENTLQA 278

>pdb|3L07|A Chain A, Methylenetetrahydrofolate DehydrogenaseMETHENYLTETRAHYDROFOLATE Cyclohydrolase, Putative Bifunctional Protein Fold From Francisella Tularensis. Length = 285

Iteration: 1
 Score =  204 bits (520), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 112/256 (43%), Positives = 154/256 (60%), Gaps = 8/256 (3%)
Query: 9   PGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSIN 68
           P L  I+VG    S+TYV +K KAC +VGI S V    +  TE E+L  +   N DSS++
Sbjct: 35  PKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVH 94
Query: 69  GILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLI 128
            ILVQLPLP H+++  ++ ++  EKDVDGFHP N+G L +R ++ L   CTPKG + +L 
Sbjct: 95  AILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLE-SCTPKGIMTMLR 153
Query: 129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAG 188
             G++  G  AVV+G SN+VG P S LL    ATV+  H  T + +  T++ADI+I A G
Sbjct: 154 EYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVG 213
Query: 189 VANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGP 248
             N +    +K GAVV+DVG   VD        +++GDV +       + ITPVPGGVGP
Sbjct: 214 KPNFITADMVKEGAVVIDVGINHVDG-------KIVGDVDFAAVKDKVAAITPVPGGVGP 266
Query: 249 MTVAMLLSNTLDSAKR 264
           MT+  LL NT   A+ 
Sbjct: 267 MTITELLYNTFQCAQE 282

>pdb|4B4U|A Chain A, Crystal Structure Of Acinetobacter Baumannii N5, N10-Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase (Fold) Complexed With Nadp Cofactor Length = 303

Iteration: 1
 Score =  200 bits (508), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 108/267 (40%), Positives = 161/267 (60%), Gaps = 9/267 (3%)
Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
           +K   G+ P LA ILVG+   S TYVR K  AC  VG+ S+  E     T +++L  +  
Sbjct: 46  LKAKTGRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQLLAEIEK 105
Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N +  ++GIL+Q P+P  +DE    DA+SL KDVDG   L  G +AM   E  +   TP
Sbjct: 106 LNANPDVHGILLQHPVPAQIDERACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATP 163
Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
            G + +L  + +EI GK+AVV+GRS I+G P +++L + +ATV+I H+ T+N  ++  +A
Sbjct: 164 AGIMTILKENNIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRTQNLPELVKQA 223
Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DI++ A G A L++  W+K GAVV+D G  P D          +GD+  +    +AS  T
Sbjct: 224 DIIVGAVGKAELIQKDWIKQGAVVVDAGFHPRDGGG-------VGDIQLQGIEEIASAYT 276
Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRAYG 267
           PVPGGVGPMT+  L+  T+++A++A G
Sbjct: 277 PVPGGVGPMTITTLIRQTVEAAEKALG 303

>pdb|2C2X|A Chain A, Three Dimensional Structure Of Bifunctional Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase From Mycobacterium Tuberculosis Length = 281

Iteration: 1
 Score =  192 bits (488), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 112/263 (42%), Positives = 153/263 (58%), Gaps = 12/263 (4%)
Query: 4   SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQ 63
           + G+ PGL  ILVG+   SQ YVR K   C +VGI SI  +     +   +   +   N 
Sbjct: 28  AAGRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPADISTATLNETIDELNA 87
Query: 64  DSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGC 123
           +    G +VQLPLP+HLDE   L+ V   KD DG HP N+G L +    PL  PCTP+G 
Sbjct: 88  NPDCTGYIVQLPLPKHLDENAALERVDPAKDADGLHPTNLGRLVLGTPAPL--PCTPRGI 145
Query: 124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALTKNPEQITSEAD 181
           + LL R  + I G + VVIGR   VG P  LLL R   +ATV++ H  T++   +T +AD
Sbjct: 146 VHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPALTRQAD 205
Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITP 241
           IV+AA GVA+L+    ++PGA V+DVG    DD        L+GDV + +   LA  ++P
Sbjct: 206 IVVAAVGVAHLLTADMVRPGAAVIDVGVSRTDD-------GLVGDV-HPDVWELAGHVSP 257
Query: 242 VPGGVGPMTVAMLLSNTLDSAKR 264
            PGGVGP+T A LL+N ++ A+R
Sbjct: 258 NPGGVGPLTRAFLLTNVVELAER 280

>pdb|3NGL|A Chain A, Crystal Structure Of Bifunctional 5,10-Methylenetetrahydrofolate Dehydrogenase CYCLOHYDROLASE FROM THERMOPLASMA ACIDOPHILUM Length = 276

Iteration: 1
 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 143/259 (55%), Gaps = 14/259 (5%)
Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           G  P L +I +G+   +  Y R KI+  +++GI   + ++ D   +D +L  + +  +D 
Sbjct: 25  GLEPSLKLIQIGDNEAASIYARAKIRRGKKIGIAVDLEKYDDISMKD-LLKRIDDLAKDP 83
Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIE 125
            INGI+++ PLP+  D  +I+  +   KDVD   P N G +A+  RE   +P TP+  I+
Sbjct: 84  QINGIMIENPLPKGFDYYEIVRNIPYYKDVDALSPYNQGLIAL-NRE-FLVPATPRAVID 141
Query: 126 LLIRSGVEIMGKNAV-VIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVI 184
           ++   G     +N V ++ RS +VG P S++L   + TVS+ H+ TK+   +T  + IV+
Sbjct: 142 IMDYYGYH---ENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTRSSKIVV 198
Query: 185 AAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPG 244
            A G    +    + PG+VV+DVG   V+D       +++GD  +E+       ITPVPG
Sbjct: 199 VAVGRPGFLNREMVTPGSVVIDVGINYVND-------KVVGDANFEDLSEYVEAITPVPG 251
Query: 245 GVGPMTVAMLLSNTLDSAK 263
           GVGP+T   +L N + +A+
Sbjct: 252 GVGPITATNILENVVKAAE 270

>pdb|1EDZ|A Chain A, Structure Of The Nad-Dependent 5,10- Methylenetetrahydrofolate Dehydrogenase From Saccharomyces Cerevisiae Length = 320

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 118/285 (41%), Gaps = 41/285 (14%)
Query: 6   GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDS 65
           G+ P L   L      ++ Y     K  E +G +  +    D   +D +  A+   N D 
Sbjct: 34  GQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVIED---KDFLEEAIIQANGDD 90
Query: 66  SINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPL-------NIGNLAMRGREPLFIPC 118
           S+NGI+V  P+  +  +  +   V  EKDV+G + +       N+  L    R    +PC
Sbjct: 91  SVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQNLYHNVRYLDKENRLKSILPC 150
Query: 119 TPKGCIEL---------LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL 169
           TP   +++         L+  G  + GK  +VI RS IVG P + LL    ATV  V   
Sbjct: 151 TPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDV- 209
Query: 170 TKNPEQITSEADIVIAAAGVANLVRGS--WLKPGAVVLDVGTCPVDDPSCEYG----YRL 223
             N ++ T    + +    V +L   S   LK  ++  DV    V  PS  Y     Y  
Sbjct: 210 -NNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGV--PSENYKFPTEYIK 266
Query: 224 MGDVCY---------EEAMRLASVITPVPGGVGPMTVAMLLSNTL 259
            G VC          ++    AS+  P+ G V   T+AMLL N L
Sbjct: 267 EGAVCINFACTKNFSDDVKEKASLYVPMTGKV---TIAMLLRNML 308

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	1e-161
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	1e-159
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	1e-146
3l07_A	285	Bifunctional protein fold; structural genomics, ID	1e-146
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	1e-146
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	1e-145
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	1e-139
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	1e-136
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	1e-113
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	8e-09

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} Length = 300

 Score =  448 bits (1155), Expect = e-161
 Identities = 137/268 (51%), Positives = 183/268 (68%), Gaps = 2/268 (0%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
           +   G+VPGLA I+VG+R DS+ YV+ K KA  EVG+ S   E  +  +++ +   +   
Sbjct: 31  ELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKL 90

Query: 62  NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPK 121
           N D + +GI+VQLPLP+HL+E + ++ +   KD D   P+N+G L  +GREP F PCT K
Sbjct: 91  NNDPNCHGIIVQLPLPKHLNENRAIEKIHPHKDADALLPVNVGLLHYKGREPPFTPCTAK 150

Query: 122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL--TKNPEQITSE 179
           G I LL R G+E+ GK AVV+GRSNIVG P + LL + +ATV+IVH+   T++       
Sbjct: 151 GVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTEDMIDYLRT 210

Query: 180 ADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVI 239
           ADIVIAA G    V+G W+K GA V+DVGT PV DPS + GYRL+GDVC+EEA   A+ I
Sbjct: 211 ADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPVPDPSRKDGYRLVGDVCFEEAAARAAWI 270

Query: 240 TPVPGGVGPMTVAMLLSNTLDSAKRAYG 267
           +PVPGGVGPMT+AMLL NTL++ K A G
Sbjct: 271 SPVPGGVGPMTIAMLLENTLEAFKAALG 298

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* Length = 301

 Score =  443 bits (1142), Expect = e-159
 Identities = 121/268 (45%), Positives = 177/268 (66%), Gaps = 2/268 (0%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
           ++  G  P LA++ VG R DS  Y+  K+KA EE+GIK+   +     TE EV+  +++ 
Sbjct: 29  EQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSL 88

Query: 62  NQDSSINGILVQLPLPQH--LDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCT 119
           N+DS+++G LVQLPL     ++  ++++A++ EKDVDG   +N G LA       FIPCT
Sbjct: 89  NEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCT 148

Query: 120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSE 179
           PKGC+EL+  +GV I G++AVV+GRS IVG P   LL  ++ATV+  H+ T + ++  ++
Sbjct: 149 PKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEVNK 208

Query: 180 ADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVI 239
            DI++ A G   +V+G W+KPGA+V+D G   V D     G +++GDV Y+EA   AS I
Sbjct: 209 GDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFI 268

Query: 240 TPVPGGVGPMTVAMLLSNTLDSAKRAYG 267
           TPVPGGVGPMTVAML+ +T++SAKR   
Sbjct: 269 TPVPGGVGPMTVAMLMQSTVESAKRFLE 296

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 Length = 288

 Score =  409 bits (1054), Expect = e-146
 Identities = 119/268 (44%), Positives = 162/268 (60%), Gaps = 8/268 (2%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
              +  + PGLAV+LVG    SQ YV +K KACEEVG  S   +  +  +E E+L  +  
Sbjct: 26  RIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDT 85

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N D++I+GILVQLPLP  +D  K+L+ +  +KDVDGFHP N+G L    R P   PCTP
Sbjct: 86  LNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQ--RAPRLRPCTP 143

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           +G + LL R  ++  G NAVVIG SNIVG P S+ L     T ++ H  TKN       A
Sbjct: 144 RGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENA 203

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           D++I A G    + G W+K GA+V+DVG   +++       +++GDV +E+A + AS IT
Sbjct: 204 DLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENG------KVVGDVVFEDAAKRASYIT 257

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRAYGF 268
           PVPGGVGPMTVA L+ NTL +    +  
Sbjct: 258 PVPGGVGPMTVATLIENTLQACVEYHDP 285

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} Length = 285

 Score =  408 bits (1052), Expect = e-146
 Identities = 112/265 (42%), Positives = 153/265 (57%), Gaps = 8/265 (3%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
            K      P L  I+VG    S+TYV +K KAC +VGI S V    +  TE E+L  +  
Sbjct: 27  YKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQ 86

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N DSS++ ILVQLPLP H+++  ++ ++  EKDVDGFHP N+G L +R  +     CTP
Sbjct: 87  LNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRD-KKCLESCTP 145

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KG + +L   G++  G  AVV+G SN+VG P S LL    ATV+  H  T + +  T++A
Sbjct: 146 KGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKA 205

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DI+I A G  N +    +K GAVV+DVG   VD        +++GDV +       + IT
Sbjct: 206 DILIVAVGKPNFITADMVKEGAVVIDVGINHVDG-------KIVGDVDFAAVKDKVAAIT 258

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRA 265
           PVPGGVGPMT+  LL NT   A+  
Sbjct: 259 PVPGGVGPMTITELLYNTFQCAQEL 283

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} Length = 285

 Score =  408 bits (1052), Expect = e-146
 Identities = 128/262 (48%), Positives = 177/262 (67%), Gaps = 7/262 (2%)

Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
           KS G    LAVILVG+   SQTYV++K KACEE GIKS+V    +  T++E+L  ++  N
Sbjct: 28  KSKGIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELLALINTLN 87

Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
            D S++GILVQLPLP H+ +  IL+++   KDVDGFHP+N+G L + G E  F+PCTP G
Sbjct: 88  HDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNL-GLESGFLPCTPLG 146

Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADI 182
            ++LL    +++ GK+AV+IG SNIVG P + +L    ATVS+ H  TK+    T +AD+
Sbjct: 147 VMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADL 206

Query: 183 VIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPV 242
           +I AAG  NL+R   +K G +V+DVG   ++        +++GDV +EE  + +S ITPV
Sbjct: 207 IIVAAGCVNLLRSDMVKEGVIVVDVGINRLESG------KIVGDVDFEEVSKKSSYITPV 260

Query: 243 PGGVGPMTVAMLLSNTLDSAKR 264
           PGGVGPMT+AMLL NT+ SAK 
Sbjct: 261 PGGVGPMTIAMLLENTVKSAKN 282

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} Length = 286

 Score =  408 bits (1051), Expect = e-145
 Identities = 130/266 (48%), Positives = 168/266 (63%), Gaps = 8/266 (3%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
            ++   +VPGLAVILVG    SQ YV +K K CEEVG  S   +     ++D++L  +  
Sbjct: 28  RRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDR 87

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTP 120
            N D +I+GILVQLPLP HLD   +L+ +  +KDVDGFHP NIG LA   R PL  PCTP
Sbjct: 88  LNDDPAIDGILVQLPLPAHLDASLLLERIHPDKDVDGFHPYNIGRLAQ--RMPLLRPCTP 145

Query: 121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEA 180
           KG + LL  +G ++ G +AVV+G SNIVG P +L L     TV++ H  T++     S A
Sbjct: 146 KGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVSRA 205

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           D+V+ AAG   LV+G W+K GA+V+DVG     D       RL+GDV YE A + AS IT
Sbjct: 206 DLVVVAAGKPGLVKGEWIKEGAIVIDVGINRQADG------RLVGDVEYEVAAQRASWIT 259

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKRAY 266
           PVPGGVGPMT A LL NTL +A+  +
Sbjct: 260 PVPGGVGPMTRACLLENTLHAAEHLH 285

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A Length = 276

 Score =  391 bits (1006), Expect = e-139
 Identities = 80/263 (30%), Positives = 139/263 (52%), Gaps = 12/263 (4%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
            +  G  P L +I +G+   +  Y R KI+  +++GI   + ++ D  +  ++L  + + 
Sbjct: 21  IERSGLEPSLKLIQIGDNEAASIYARAKIRRGKKIGIAVDLEKYDD-ISMKDLLKRIDDL 79

Query: 62  NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPK 121
            +D  INGI+++ PLP+  D  +I+  +   KDVD   P N G +A+       +P TP+
Sbjct: 80  AKDPQINGIMIENPLPKGFDYYEIVRNIPYYKDVDALSPYNQGLIALN--REFLVPATPR 137

Query: 122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEAD 181
             I+++   G         ++ RS +VG P S++L   + TVS+ H+ TK+   +T  + 
Sbjct: 138 AVIDIMDYYGYH--ENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIGSMTRSSK 195

Query: 182 IVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITP 241
           IV+ A G    +    + PG+VV+DVG   V+D       +++GD  +E+       ITP
Sbjct: 196 IVVVAVGRPGFLNREMVTPGSVVIDVGINYVND-------KVVGDANFEDLSEYVEAITP 248

Query: 242 VPGGVGPMTVAMLLSNTLDSAKR 264
           VPGGVGP+T   +L N + +A+ 
Sbjct: 249 VPGGVGPITATNILENVVKAAEF 271

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A Length = 281

 Score =  383 bits (986), Expect = e-136
 Identities = 111/264 (42%), Positives = 153/264 (57%), Gaps = 12/264 (4%)

Query: 3   KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYN 62
            + G+ PGL  ILVG+   SQ YVR K   C +VGI SI  +     +   +   +   N
Sbjct: 27  DAAGRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPADISTATLNETIDELN 86

Query: 63  QDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKG 122
            +    G +VQLPLP+HLDE   L+ V   KD DG HP N+G L +    P  +PCTP+G
Sbjct: 87  ANPDCTGYIVQLPLPKHLDENAALERVDPAKDADGLHPTNLGRLVL--GTPAPLPCTPRG 144

Query: 123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR--HHATVSIVHALTKNPEQITSEA 180
            + LL R  + I G + VVIGR   VG P  LLL R   +ATV++ H  T++   +T +A
Sbjct: 145 IVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRDLPALTRQA 204

Query: 181 DIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT 240
           DIV+AA GVA+L+    ++PGA V+DVG    DD        L+GDV + +   LA  ++
Sbjct: 205 DIVVAAVGVAHLLTADMVRPGAAVIDVGVSRTDD-------GLVGDV-HPDVWELAGHVS 256

Query: 241 PVPGGVGPMTVAMLLSNTLDSAKR 264
           P PGGVGP+T A LL+N ++ A+R
Sbjct: 257 PNPGGVGPLTRAFLLTNVVELAER 280

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* Length = 320

 Score =  328 bits (844), Expect = e-113
 Identities = 70/305 (22%), Positives = 112/305 (36%), Gaps = 63/305 (20%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
           K   G+ P L   L      ++ Y     K  E +G +  +        +D +  A+   
Sbjct: 30  KTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVIE---DKDFLEEAIIQA 86

Query: 62  NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNL-------AMRGREPL 114
           N D S+NGI+V  P+  +  +  +   V  EKDV+G + +   NL           R   
Sbjct: 87  NGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQNLYHNVRYLDKENRLKS 146

Query: 115 FIPCTPKGCIELL---------IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSI 165
            +PCTP   +++L         +  G  + GK  +VI RS IVG P + LL    ATV  
Sbjct: 147 ILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYS 206

Query: 166 VHALTKN-------------------------PEQITSEADIVIAAAGVAN-LVRGSWLK 199
           V                                ++ + ++D+VI      N      ++K
Sbjct: 207 VDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIK 266

Query: 200 PGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 259
            GAV ++                       ++    AS+  P+ G V   T+AMLL N L
Sbjct: 267 EGAVCINFACTKNFS---------------DDVKEKASLYVPMTGKV---TIAMLLRNML 308

Query: 260 DSAKR 264
              + 
Sbjct: 309 RLVRN 313

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 54.2 bits (130), Expect = 8e-09
 Identities = 29/160 (18%), Positives = 54/160 (33%), Gaps = 30/160 (18%)

Query: 119 TPKGCIELLIR-SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQIT 177
           T +G I + I+ +   I G N  V+G   + G+  +       A V +    +    +I 
Sbjct: 137 TAEGTIMMAIQHTDFTIHGANVAVLGLGRV-GMSVARKFAALGAKVKVGARESDLLARIA 195

Query: 178 S----------------EADIVIAA--AGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEY 219
                            + D+ I    A V      + +     V+D+ + P        
Sbjct: 196 EMGMEPFHISKAAQELRDVDVCINTIPALVVTANVLAEMPSHTFVIDLASKP-------- 247

Query: 220 GYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTL 259
                     E+    A ++  +PG V P T   +L++ L
Sbjct: 248 --GGTDFRYAEKRGIKALLVPGLPGIVAPKTAGRILADVL 285

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	100.0
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	100.0
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	100.0
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	100.0
3l07_A	285	Bifunctional protein fold; structural genomics, ID	100.0
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	100.0
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	100.0
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	100.0
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	100.0
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	100.0
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	100.0
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	100.0
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	100.0
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	100.0
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	100.0
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	100.0
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	100.0
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	100.0
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	100.0
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	100.0
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	100.0
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	100.0
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.98
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.97
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	99.97
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	99.97
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	99.97
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	99.89
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	99.78
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.71
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.16
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	99.09
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.0
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.96
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.95
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.79
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	98.77
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.73
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.64
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.64
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.64
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	98.45
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.42
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	98.41
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	98.4
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	98.38
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.36
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.35
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.33
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.3
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	98.28
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.27
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	98.27
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	98.26
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.25
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.23
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.21
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	98.19
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.16
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.16
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.13
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.12
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.12
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.12
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.1
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.1
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	98.1
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.09
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	98.09
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.09
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	98.07
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	98.07
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	98.06
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.05
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	98.05
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.05
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	98.04
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.04
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	98.02
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	98.02
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.01
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.99
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	97.99
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	97.98
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	97.97
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	97.96
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	97.95
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.94
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.92
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.88
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.86
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	97.83
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.78
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	97.78
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.73
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.68
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.65
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.64
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.64
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.58
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.58
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.56
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.55
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.51
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.5
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.48
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.46
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.45
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.44
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.42
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.38
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.37
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.37
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.36
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.36
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.35
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.31
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.3
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.27
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.25
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.2
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.18
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.18
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.13
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.12
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	96.17
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	97.09
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	97.08
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.05
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.05
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.02
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	97.02
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.02
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	97.02
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.0
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.99
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	96.98
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	96.97
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.94
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.92
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.91
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.9
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	96.9
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	96.9
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.88
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	96.88
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.87
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.86
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.84
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.84
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	96.84
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.84
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.83
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	96.82
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	96.82
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.81
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.81
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	96.8
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.8
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.8
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.79
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.79
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	96.78
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.77
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.77
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.76
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.76
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.75
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	96.75
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.75
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.75
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.74
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.74
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.74
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.74
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.74
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.74
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.72
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	96.71
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.71
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.7
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.7
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.69
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	96.69
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.69
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.69
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.68
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.68
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.68
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.68
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	96.67
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.65
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.65
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.64
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.63
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.62
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	96.62
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	96.61
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.61
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.6
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.6
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	96.59
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.59
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	96.58
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.58
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.58
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.58
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	96.56
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.56
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.56
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	96.55
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	96.55
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.55
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.55
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.54
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	96.53
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	96.52
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.52
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.52
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	96.51
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	96.51
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	96.51
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.51
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.5
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	96.5
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.5
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.49
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.48
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.48
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.48
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.48
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	96.48
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.48
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	96.48
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.48
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	96.47
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.47
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.47
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.47
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.47
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	96.46
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	96.45
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	96.45
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.45
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.45
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.44
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.44
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.42
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	96.41
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	96.41
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	96.41
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	96.41
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.4
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.4
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.4
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	96.4
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	96.39
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	96.39
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.39
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.39
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	96.38
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	96.38
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.38
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.38
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	96.38
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.37
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	96.37
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.37
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.36
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.36
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	96.36
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.36
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.36
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.36
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.35
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.35
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	96.35
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.35
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	96.34
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.33
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	96.33
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.33
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	96.33
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.32
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.32
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.32
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	96.31
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.31
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.31
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.31
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.3
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	96.29
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.29
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.29
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.29
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.29
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.28
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.28
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	96.26
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.26
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.26
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.25
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.25
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.24
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.23
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.22
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.2
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	96.2
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.19
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	96.19
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	96.19
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.18
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	96.18
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.18
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.17
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.16
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.16
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.16
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	96.15
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	96.15
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.14
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.14
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.14
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.13
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.13
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	96.13
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.12
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	96.11
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	96.11
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.11
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	96.11
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	96.1
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.1
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.09
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.09
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	96.09
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.08
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.08
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.07
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	96.06
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.05
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	96.04
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.04
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	96.04
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.03
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	96.02
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	96.02
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.02
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	96.01
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	96.01
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.01
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.01
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.01
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.0
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	95.99
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	95.99
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.98
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	95.98
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.98
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.97
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	95.96
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	95.94
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	95.93
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	95.93
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	95.93
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	95.93
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	95.92
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	95.92
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	95.91
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	95.91
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	95.9
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.9
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	95.89
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	95.89
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	95.89
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.88
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	95.88
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.87
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.86
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	95.86
3rih_A	293	Short chain dehydrogenase or reductase; structural	95.84
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	95.84
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	95.82
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	95.82
4f6c_A	427	AUSA reductase domain protein; thioester reductase	95.82
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.82
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	95.82
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	95.81
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.81
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	95.81
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.81
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.79
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	95.79
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.78
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.76
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.76
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.75
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.75
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.75
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	95.74
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.74
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	95.74
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	95.74
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	95.73
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	95.73
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	95.73
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	95.73
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	95.72
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	95.71
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.7
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	95.7
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	95.7
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	95.7
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	95.69
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.69
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.69
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	95.69
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	95.68
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	95.68
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	95.68
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	95.67
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.67
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	95.67
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.67
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	95.66
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	95.65
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	95.65
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	95.65
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	95.65
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	95.64
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	95.64
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.64
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	95.64
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	95.63
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	95.63
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	95.63
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	95.61
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.61
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	95.61
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.6
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	95.6
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	95.6
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	95.6
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	95.6
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	95.59
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.59
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	95.58
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.58
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.58
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	95.57
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	95.57
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	95.56
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.56
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	95.56
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	95.54
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	95.53
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	95.53
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	95.53
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.53
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	95.52
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	95.51
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	95.51
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	95.51
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	95.51
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	95.51
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.5
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	95.5
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	95.49
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.49
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	95.48
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	95.48
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	95.47
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	95.47
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	95.47
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	95.46
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	95.44
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	95.44
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.44
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	95.43
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.42
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.41
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	95.41
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.4
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.4
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.4
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	95.4
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	95.39
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	95.38
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.37
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	95.37
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	95.37
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	95.37
1xq1_A	266	Putative tropinone reducatse; structural genomics,	95.37
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	95.36
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	95.36
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	95.35
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.34
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	95.34
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	95.33

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=100.00  E-value=1.5e-82  Score=574.78  Aligned_cols=256  Identities=42%  Similarity=0.718  Sum_probs=249.2

Q ss_pred             CCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCH
Q 024306            3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (269)
Q Consensus         3 ~~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~   82 (269)
                      ++.|++|+||+|+||+||+|.+|+++|.|+|+++||+++.+.||++++|+||++.|++||+|++||||+||+|||+|+++
T Consensus        48 ~~~g~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~~~se~ell~~I~~LN~D~~V~GIlVQlPLP~hid~  127 (303)
T 4b4u_A           48 AKTGRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDE  127 (303)
T ss_dssp             HHHSCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCH
T ss_pred             HcCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCccCCHHHHHHHHHHhcCCCCccEEEEeCCCccccCh
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE
Q 024306           83 GKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT  162 (269)
Q Consensus        83 ~~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~  162 (269)
                      .+++++|+|+|||||||+.|.|+|+.|  .+.|+||||.|++++|++|+++++||+++|||||..||||++.+|.++||+
T Consensus       128 ~~i~~~I~p~KDVDG~hp~N~G~L~~g--~~~~~PcTp~gv~~lL~~~~i~l~Gk~vvViGRS~iVGkPla~LL~~~~AT  205 (303)
T 4b4u_A          128 RACFDAISLAKDVDGVTCLGFGRMAMG--EAAYGSATPAGIMTILKENNIEIAGKHAVVVGRSAILGKPMAMMLLQANAT  205 (303)
T ss_dssp             HHHHHHSCGGGCTTCCCHHHHHHHHTT--CCCCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCE
T ss_pred             HHHHhccCcccccCccCcchHHHhcCC--CCcccCccHHHHHHHHHHHCCCCCCCEEEEEeccccccchHHHHHHhcCCE
Confidence            999999999999999999999999976  678999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceeccc
Q 024306          163 VSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPV  242 (269)
Q Consensus       163 Vti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpv  242 (269)
                      ||+||++|+++.+++++|||||+|+|+|++++++|+|+|++|||+|+|+.++       +++|||||++++++++++|||
T Consensus       206 VTi~Hs~T~dl~~~~~~ADIvV~A~G~p~~i~~d~vk~GavVIDVGin~~~~-------~~vGDVdf~~v~~~a~~iTPV  278 (303)
T 4b4u_A          206 VTICHSRTQNLPELVKQADIIVGAVGKAELIQKDWIKQGAVVVDAGFHPRDG-------GGVGDIQLQGIEEIASAYTPV  278 (303)
T ss_dssp             EEEECTTCSSHHHHHHTCSEEEECSCSTTCBCGGGSCTTCEEEECCCBCCTT-------SCBCSBCCTTGGGTCSEECCS
T ss_pred             EEEecCCCCCHHHHhhcCCeEEeccCCCCccccccccCCCEEEEeceecCCC-------CeECCcCHHHHhhhCcEECCC
Confidence            9999999999999999999999999999999999999999999999998654       799999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhC
Q 024306          243 PGGVGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       243 pgGvGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      ||||||||++|||+|+++|+|+.+|
T Consensus       279 PGGVGPmTiamLl~Ntv~aa~r~~G  303 (303)
T 4b4u_A          279 PGGVGPMTITTLIRQTVEAAEKALG  303 (303)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCchHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999876

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=100.00  E-value=4.5e-81  Score=566.57  Aligned_cols=266  Identities=52%  Similarity=0.856  Sum_probs=254.4

Q ss_pred             CCC-CCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCH
Q 024306            4 SIG-KVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (269)
Q Consensus         4 ~~~-~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~   82 (269)
                      +.| ++|+||+|+||+||+|++|+++|.|+|+++||+++++.||++++++||++.|++||+|++||||+||+|||+|+++
T Consensus        32 ~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~  111 (300)
T 4a26_A           32 LYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNE  111 (300)
T ss_dssp             HTTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCH
T ss_pred             hCCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCH
Confidence            446 8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE
Q 024306           83 GKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT  162 (269)
Q Consensus        83 ~~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~  162 (269)
                      .+++++|+|+|||||+|++|.|+|+.|...++|+||||+|++++|++|+++++||+|+|||+|+.||+|++++|.++||+
T Consensus       112 ~~v~~~I~p~KDVDG~~~~N~G~l~~g~~~~~~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAt  191 (300)
T 4a26_A          112 NRAIEKIHPHKDADALLPVNVGLLHYKGREPPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENAT  191 (300)
T ss_dssp             HHHHHTSCGGGCTTCCSHHHHHHHHCTTCCCSCCCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCE
T ss_pred             HHHHhhCCcccccccCCcceEEEeecCCCcCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCe
Confidence            99999999999999999999999997744678999999999999999999999999999999998899999999999999


Q ss_pred             EEEEeCCCCCHh--hhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceec
Q 024306          163 VSIVHALTKNPE--QITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT  240 (269)
Q Consensus       163 Vti~~~~t~~l~--~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~t  240 (269)
                      ||+|||+|.++.  +++++|||||+|+|.|++++.+|+++|++|||++++|.++++.+.|++++|||||+++.++++++|
T Consensus       192 Vtv~~~~T~~l~l~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~~~~~~~~~g~kl~GDVdf~~v~~~a~~iT  271 (300)
T 4a26_A          192 VTIVHSGTSTEDMIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVVDVGTTPVPDPSRKDGYRLVGDVCFEEAAARAAWIS  271 (300)
T ss_dssp             EEEECTTSCHHHHHHHHHTCSEEEECSCCTTCBCGGGSCTTCEEEECCCEEESCSCSTTSCEEECSBCHHHHTTTCSEEE
T ss_pred             EEEEeCCCCCchhhhhhccCCEEEECCCCCCCCcHHhcCCCcEEEEEeccCCcCCcccCCceeecCccHHHHHhhceEeC
Confidence            999999999999  999999999999999999999999999999999999987654444568999999999999999999


Q ss_pred             ccCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024306          241 PVPGGVGPMTVAMLLSNTLDSAKRAYGFT  269 (269)
Q Consensus       241 pvpgGvGp~T~~mLl~n~v~a~~~~~~~~  269 (269)
                      ||||||||||++|||+|+++++++|.+.+
T Consensus       272 PVPGGVGpmT~a~Ll~Ntv~aa~~~~~~~  300 (300)
T 4a26_A          272 PVPGGVGPMTIAMLLENTLEAFKAALGVS  300 (300)
T ss_dssp             CTTTSSSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCcChHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999998864

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=100.00  E-value=3.2e-80  Score=557.19  Aligned_cols=257  Identities=51%  Similarity=0.799  Sum_probs=248.1

Q ss_pred             CCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCH
Q 024306            3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (269)
Q Consensus         3 ~~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~   82 (269)
                      ++.+++|+||+|+||+||+|++|+++|.|+|+++||+++++.||++++++||++.|++||+|++||||+||+|||+|+++
T Consensus        30 ~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~  109 (286)
T 4a5o_A           30 QQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDA  109 (286)
T ss_dssp             HTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCH
T ss_pred             hcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE
Q 024306           83 GKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT  162 (269)
Q Consensus        83 ~~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~  162 (269)
                      .+++++|+|+|||||+|++|.|+|+.|  .++|+||||.|++++|++|+++++||+|+|||+|+.||+|++++|.++||+
T Consensus       110 ~~v~~~I~p~KDVDG~~~~N~g~l~~g--~~~~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAt  187 (286)
T 4a5o_A          110 SLLLERIHPDKDVDGFHPYNIGRLAQR--MPLLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCT  187 (286)
T ss_dssp             HHHHHTSCGGGCTTCCSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCE
T ss_pred             HHHHhhCCcccccccCChhhhHHHhcC--CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCe
Confidence            999999999999999999999999976  578999999999999999999999999999999998999999999999999


Q ss_pred             EEEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceeccc
Q 024306          163 VSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPV  242 (269)
Q Consensus       163 Vti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpv  242 (269)
                      ||+||++|+++++++++|||||+|+|.|++++++|+++|++|||++++|.++      ++++|||||+++.++++++|||
T Consensus       188 Vtv~hs~T~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~~~~------gkl~GDVdf~~v~~~a~~iTPV  261 (286)
T 4a5o_A          188 VTVTHRFTRDLADHVSRADLVVVAAGKPGLVKGEWIKEGAIVIDVGINRQAD------GRLVGDVEYEVAAQRASWITPV  261 (286)
T ss_dssp             EEEECTTCSCHHHHHHTCSEEEECCCCTTCBCGGGSCTTCEEEECCSCSSCC------CCSSCSBCHHHHHHHCSEECCS
T ss_pred             EEEEeCCCcCHHHHhccCCEEEECCCCCCCCCHHHcCCCeEEEEeccccccc------CCcccCccHHHHHhhceEeCCC
Confidence            9999999999999999999999999999999999999999999999999765      2899999999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHHHHHhC
Q 024306          243 PGGVGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       243 pgGvGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      ||||||||++|||+|+++++++|.+
T Consensus       262 PGGVGpmT~a~Ll~ntv~aa~~~~~  286 (286)
T 4a5o_A          262 PGGVGPMTRACLLENTLHAAEHLHD  286 (286)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999998754

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=100.00  E-value=8.9e-80  Score=554.51  Aligned_cols=254  Identities=49%  Similarity=0.790  Sum_probs=245.3

Q ss_pred             CCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHH
Q 024306            6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKI   85 (269)
Q Consensus         6 ~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i   85 (269)
                      +.+|+||+|+||+||+|++|+++|.|+|+++||+++++.||++++++||++.|++||+|++||||+||+|||+|+++.++
T Consensus        31 ~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v  110 (285)
T 3p2o_A           31 GIESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLI  110 (285)
T ss_dssp             TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHH
T ss_pred             CCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHH
Confidence            55999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCccccccccccceecccccCCCCCc-cccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE
Q 024306           86 LDAVSLEKDVDGFHPLNIGNLAMRGREPL-FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS  164 (269)
Q Consensus        86 ~~~i~p~kdvdg~~~~n~g~l~~g~~~~~-~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt  164 (269)
                      +++|+|+|||||+|++|.|+|+.|  .+. |+||||.|++++|++++++++||+|+|||+|+.||+|++++|.++||+||
T Consensus       111 ~~~I~p~KDVDg~~~~N~g~l~~g--~~~g~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVt  188 (285)
T 3p2o_A          111 LESIISSKDVDGFHPINVGYLNLG--LESGFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS  188 (285)
T ss_dssp             HHHSCGGGCTTCCSHHHHHHHHTT--CCSSCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred             HhhCCcccccccCCHhhhhhhhcC--CCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEE
Confidence            999999999999999999999976  455 99999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCC
Q 024306          165 IVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPG  244 (269)
Q Consensus       165 i~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpg  244 (269)
                      +||++++++.+++++|||||+|+|.|++++++|+++|++|||++++|.++      ++++|||||+++.++++++|||||
T Consensus       189 v~h~~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~~~~~------gkl~GDVdf~~v~~~a~~iTPVPG  262 (285)
T 3p2o_A          189 VCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVVDVGINRLES------GKIVGDVDFEEVSKKSSYITPVPG  262 (285)
T ss_dssp             EECTTCSCHHHHHTTCSEEEECSSCTTCBCGGGSCTTEEEEECCCEECTT------SCEECSBCHHHHTTTEEEECCSSS
T ss_pred             EEeCCchhHHHHhhcCCEEEECCCCCCcCCHHHcCCCeEEEEeccCcccC------CCEeccccHHHHHhhheEeCCCCC
Confidence            99999999999999999999999999999999999999999999999765      289999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHHHHHHhC
Q 024306          245 GVGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       245 GvGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      ||||||++|||+|+++++++|.+
T Consensus       263 GVGpmT~a~Ll~ntv~a~~~~~~  285 (285)
T 3p2o_A          263 GVGPMTIAMLLENTVKSAKNRLN  285 (285)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             cCcHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999998864

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=100.00  E-value=1.3e-79  Score=553.52  Aligned_cols=255  Identities=44%  Similarity=0.714  Sum_probs=246.3

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHH
Q 024306            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (269)
Q Consensus         4 ~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~   83 (269)
                      +.+++|+||+|+||+||+|++|+++|.|+|+++||+++++.||++++++||++.|++||+|++||||+||+|||+|+++.
T Consensus        30 ~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~  109 (285)
T 3l07_A           30 HTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKN  109 (285)
T ss_dssp             HHCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHH
T ss_pred             cCCCCceEEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHH
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024306           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (269)
Q Consensus        84 ~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~V  163 (269)
                      +++++|+|+|||||+|++|.|+++.|. .++|+||||.|++++|++++++++||+++|||+|+.||+|++++|.++||+|
T Consensus       110 ~v~~~I~p~KDVDG~~~~N~G~l~~g~-~~~~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtV  188 (285)
T 3l07_A          110 NVIYSIKPEKDVDGFHPTNVGRLQLRD-KKCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATV  188 (285)
T ss_dssp             HHHHHSCGGGBTTCCSHHHHHHHHHTC-TTCCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEE
T ss_pred             HHHhhCCcccccccCChhheeehhcCC-CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeE
Confidence            999999999999999999999999772 2789999999999999999999999999999999989999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccC
Q 024306          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP  243 (269)
Q Consensus       164 ti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp  243 (269)
                      |+|||+++++.+++++|||||+|+|.|++++++|+++|++|||++++|.+.       +++|||||+++.++++++||||
T Consensus       189 tv~hs~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~~~g-------~l~GDVdf~~v~~~a~~iTPVP  261 (285)
T 3l07_A          189 TTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDG-------KIVGDVDFAAVKDKVAAITPVP  261 (285)
T ss_dssp             EEECTTCSSHHHHHTTCSEEEECCCCTTCBCGGGSCTTCEEEECCCEEETT-------EEECSBCHHHHTTTCSEECCSS
T ss_pred             EEEeCCchhHHHhcccCCEEEECCCCCCCCCHHHcCCCcEEEEecccCcCC-------ceecCccHHHHHhhheEeCCCC
Confidence            999999999999999999999999999999999999999999999999752       8999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHHHHHh
Q 024306          244 GGVGPMTVAMLLSNTLDSAKRAY  266 (269)
Q Consensus       244 gGvGp~T~~mLl~n~v~a~~~~~  266 (269)
                      |||||||++|||+|+++++++|.
T Consensus       262 GGVGpmT~a~Ll~ntv~a~~~~~  284 (285)
T 3l07_A          262 GGVGPMTITELLYNTFQCAQELN  284 (285)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHTC
T ss_pred             CcChHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999874

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=100.00  E-value=3.7e-79  Score=553.75  Aligned_cols=262  Identities=46%  Similarity=0.786  Sum_probs=245.4

Q ss_pred             CCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCC--CCHH
Q 024306            6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQH--LDEG   83 (269)
Q Consensus         6 ~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~--~~~~   83 (269)
                      +++|+||+|+||+||+|.+|+++|.|+|+++||+++.+.||++++++||++.|++||+|++||||+||+|||+|  +|+.
T Consensus        33 ~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~  112 (301)
T 1a4i_A           33 GFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTE  112 (301)
T ss_dssp             TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHH
T ss_pred             CCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHH
Confidence            47799999999999999999999999999999999999999999999999999999999999999999999999  9999


Q ss_pred             HHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024306           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (269)
Q Consensus        84 ~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~V  163 (269)
                      +++++|+|+|||||||++|.|+|+.|...++|+||||+|++++|++++++++||+|+|||+|+.||+|++++|.++||+|
T Consensus       113 ~i~~~I~p~KDVDG~hp~N~G~l~~g~~~~~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtV  192 (301)
T 1a4i_A          113 EVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATV  192 (301)
T ss_dssp             HHHHTSCGGGBTTCCSHHHHHHHHTTCCSSCCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEE
T ss_pred             HHHhccCCCCCccCCChhhHHHHhcCCCCCCccCchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeE
Confidence            99999999999999999999999987434789999999999999999999999999999999989999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccC
Q 024306          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP  243 (269)
Q Consensus       164 ti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp  243 (269)
                      |+||++++++.+++++|||||+|+|.|++++++|+++|++|||+++++.+++++.+|++++|||||+++.++++++||||
T Consensus       193 tv~hs~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~~~~d~~~~~g~klvGDVdf~~v~~~a~~iTPVP  272 (301)
T 1a4i_A          193 TTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVP  272 (301)
T ss_dssp             EEECTTCSSHHHHHTTCSEEEECCCCTTCBCGGGSCTTCEEEECCCBC----------CCBCSBCHHHHTTTCSEECCSS
T ss_pred             EEEECCcccHHHHhccCCEEEECCCCcccCCHHHcCCCcEEEEccCCCcccccccCCCeeeccccHHHhhhhceEeCCCC
Confidence            99999999999999999999999999999999999999999999999976543333458999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhC
Q 024306          244 GGVGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       244 gGvGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      |||||||++|||+|+++++++|+.
T Consensus       273 GGVGpmTiamLl~Ntv~aa~~~~~  296 (301)
T 1a4i_A          273 GGVGPMTVAMLMQSTVESAKRFLE  296 (301)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999998875

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=100.00  E-value=6.5e-79  Score=549.15  Aligned_cols=256  Identities=46%  Similarity=0.774  Sum_probs=247.2

Q ss_pred             CCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHH
Q 024306            4 SIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEG   83 (269)
Q Consensus         4 ~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~   83 (269)
                      +.+++|+||+|+||+||+|++|+++|.|+|+++||+++.+.||++++++||++.|++||+|++||||+||+|||+|+|+.
T Consensus        29 ~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~  108 (288)
T 1b0a_A           29 AGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNV  108 (288)
T ss_dssp             TTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHH
T ss_pred             cCCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHH
Confidence            33477999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024306           84 KILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (269)
Q Consensus        84 ~i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~V  163 (269)
                      +++++|+|+|||||||++|.|+|+.|  .++|+||||+|++++|++|+++++||+|+|||+|++||+|++++|.++||+|
T Consensus       109 ~i~~~I~p~KDVDG~~p~n~g~l~~g--~~~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtV  186 (288)
T 1b0a_A          109 KVLERIHPDKDVDGFHPYNVGRLCQR--APRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTT  186 (288)
T ss_dssp             HHHTTSCTTTCTTCCSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEE
T ss_pred             HHHhccCCccCcccCCccchhHHhCC--CCCCCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeE
Confidence            99999999999999999999999976  5689999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccC
Q 024306          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP  243 (269)
Q Consensus       164 ti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp  243 (269)
                      |+||++++++.+++++|||||+|+|.|++++++|+|+|++|||+++++.++      ++++|||||+++.++++++||||
T Consensus       187 tv~hs~t~~L~~~~~~ADIVI~Avg~p~lI~~~~vk~GavVIDVgi~r~~~------g~l~GDVdf~~v~~~a~~iTPVP  260 (288)
T 1b0a_A          187 TVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLEN------GKVVGDVVFEDAAKRASYITPVP  260 (288)
T ss_dssp             EEECSSCSCHHHHHHHCSEEEECSCCTTCBCTTTSCTTCEEEECCCEECTT------SCEECSBCHHHHHHHCSEECCSS
T ss_pred             EEEeCCchhHHHHhccCCEEEECCCCcCcCCHHHcCCCcEEEEccCCccCC------CCccCCcCHHHHhhhccEecCCC
Confidence            999999999999999999999999999999999999999999999998754      28999999999999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHHHHHhC
Q 024306          244 GGVGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       244 gGvGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      |||||||++|||+|+++++++|+.
T Consensus       261 GGVGpmT~a~Ll~Ntv~aa~~~~~  284 (288)
T 1b0a_A          261 GGVGPMTVATLIENTLQACVEYHD  284 (288)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCccHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999998865

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=100.00  E-value=9.6e-78  Score=538.67  Aligned_cols=250  Identities=32%  Similarity=0.579  Sum_probs=241.9

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHH
Q 024306            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (269)
Q Consensus         5 ~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~   84 (269)
                      .|++|+||+|+||+||+|++|+++|.|+|+++|| ++.+.||++++++||++.|++||+|++||||+||+|||+|+++.+
T Consensus        24 l~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi-~~~~~lp~~~s~~ell~~I~~lN~D~~v~GIlvqlPLP~~id~~~  102 (276)
T 3ngx_A           24 SGLEPSLKLIQIGDNEAASIYARAKIRRGKKIGI-AVDLEKYDDISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYE  102 (276)
T ss_dssp             TTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTC-EEEEEEESSCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTCCHHH
T ss_pred             hCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHCCe-EEEEECCCCCCHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCHHH
Confidence            4789999999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE
Q 024306           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS  164 (269)
Q Consensus        85 i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt  164 (269)
                      ++++|+|+|||||+|++|.|+|+.|  .++|+||||.|++++|++++  ++||+|+|||+|+.||+|++++|.++||+||
T Consensus       103 v~~~I~p~KDVDG~~p~n~G~l~~g--~~~~~PcTp~gv~~lL~~~~--l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVt  178 (276)
T 3ngx_A          103 IVRNIPYYKDVDALSPYNQGLIALN--REFLVPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLNRNYTVS  178 (276)
T ss_dssp             HHTTSCGGGBTTCCSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHHT--CCSCEEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred             HHhhCCCCCcccCCCccchhhhhcC--CCCCCCCcHHHHHHHHHHhC--cCCCEEEEEcCChHHHHHHHHHHHHCCCeEE
Confidence            9999999999999999999999977  67899999999999999998  9999999999999899999999999999999


Q ss_pred             EEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCC
Q 024306          165 IVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPG  244 (269)
Q Consensus       165 i~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpg  244 (269)
                      +||++++++++++++|||||+|+|.|++++++|+++|++|||++++| ++      ++++|||||+++.++++++|||||
T Consensus       179 v~~~~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDvgi~~-~~------gkl~GDVdf~~v~~~a~~iTPVPG  251 (276)
T 3ngx_A          179 VCHSKTKDIGSMTRSSKIVVVAVGRPGFLNREMVTPGSVVIDVGINY-VN------DKVVGDANFEDLSEYVEAITPVPG  251 (276)
T ss_dssp             EECTTCSCHHHHHHHSSEEEECSSCTTCBCGGGCCTTCEEEECCCEE-ET------TEEECSBCHHHHHTTSSEECCTTT
T ss_pred             EEeCCcccHHHhhccCCEEEECCCCCccccHhhccCCcEEEEeccCc-cC------CceeccccHHHHhhhceEeCCCCC
Confidence            99999999999999999999999999999999999999999999998 33      289999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHHHHHHh
Q 024306          245 GVGPMTVAMLLSNTLDSAKRAY  266 (269)
Q Consensus       245 GvGp~T~~mLl~n~v~a~~~~~  266 (269)
                      ||||||++|||+|++++++++.
T Consensus       252 GVGpmT~a~Ll~n~v~a~~~~~  273 (276)
T 3ngx_A          252 GVGPITATNILENVVKAAEFQK  273 (276)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999998653

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=100.00  E-value=2.1e-76  Score=531.21  Aligned_cols=249  Identities=45%  Similarity=0.773  Sum_probs=241.9

Q ss_pred             CCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHH
Q 024306            6 GKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKI   85 (269)
Q Consensus         6 ~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i   85 (269)
                      |++|+||+|+||+||+|++|+++|.|+|+++||+++.+.||++++++||++.|++||+|++||||+||+|||+|+|+.++
T Consensus        30 g~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~i~~lN~D~~v~GIlvqlPlP~~id~~~i  109 (281)
T 2c2x_A           30 GRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAA  109 (281)
T ss_dssp             TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHH
T ss_pred             CCCceEEEEEeCCChhhHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCCHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC--CCEE
Q 024306           86 LDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH--HATV  163 (269)
Q Consensus        86 ~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~--ga~V  163 (269)
                      +++|+|+|||||||++|.|+|+.|  .++|+||||+|++++|++++++++||+|+|||+|++||+|++++|.++  ||+|
T Consensus       110 ~~~I~p~KDVDG~~p~n~g~l~~g--~~~~~PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atV  187 (281)
T 2c2x_A          110 LERVDPAKDADGLHPTNLGRLVLG--TPAPLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATV  187 (281)
T ss_dssp             HHHSCGGGBTTSCCHHHHHHHHHT--CCCCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEE
T ss_pred             HhhcCccCCccCCChhhHHHHhCC--CCCCCCChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEE
Confidence            999999999999999999999977  568999999999999999999999999999999999999999999999  8999


Q ss_pred             EEEeCCCCCHhhhcCCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccC
Q 024306          164 SIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP  243 (269)
Q Consensus       164 ti~~~~t~~l~~~~~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp  243 (269)
                      |+|||+++++.+.+++|||||+|+|+|++++++|+++|++|||+++++.++       .++|||| +++.++++++||||
T Consensus       188 tv~h~~t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVIDVgi~r~~~-------glvGDVd-~~v~~~a~~iTPVP  259 (281)
T 2c2x_A          188 TLCHTGTRDLPALTRQADIVVAAVGVAHLLTADMVRPGAAVIDVGVSRTDD-------GLVGDVH-PDVWELAGHVSPNP  259 (281)
T ss_dssp             EEECTTCSCHHHHHTTCSEEEECSCCTTCBCGGGSCTTCEEEECCEEEETT-------EEEESBC-GGGGGTCSEEECSS
T ss_pred             EEEECchhHHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEEEccCCCCCC-------CccCccc-cchhhheeeecCCC
Confidence            999999999999999999999999999999999999999999999998654       3999999 89999999999999


Q ss_pred             CcccHHHHHHHHHHHHHHHHH
Q 024306          244 GGVGPMTVAMLLSNTLDSAKR  264 (269)
Q Consensus       244 gGvGp~T~~mLl~n~v~a~~~  264 (269)
                      |||||||++|||+|+++++++
T Consensus       260 GGVGpmT~a~Ll~ntv~aa~~  280 (281)
T 2c2x_A          260 GGVGPLTRAFLLTNVVELAER  280 (281)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHh
Confidence            999999999999999999985

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=100.00  E-value=2.2e-62  Score=449.28  Aligned_cols=238  Identities=29%  Similarity=0.421  Sum_probs=220.3

Q ss_pred             CCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHH
Q 024306            7 KVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKIL   86 (269)
Q Consensus         7 ~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~   86 (269)
                      ++|+|++|+||+||+|.+|+++|.|+|+++||+++.+.||++   +||++.|++||+|++||||+||+|||+|+++.+++
T Consensus        35 ~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~l~~~---~~l~~~i~~lN~d~~v~GIlvqlPlp~~~~~~~i~  111 (320)
T 1edz_A           35 QGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVIEDK---DFLEEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQ  111 (320)
T ss_dssp             CCCEEEEEECCCCHHHHHHHHHHHHHHHHHTCEEEEEECSSG---GGHHHHHHHHHHCTTCCEEEECSCSSSSHHHHHHT
T ss_pred             CCCeEEEEEECCchhHHHHHHHHHHHHHHcCCEEEEEECCCh---HHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHH
Confidence            679999999999999999999999999999999999999974   67999999999999999999999999999999999


Q ss_pred             hcCCccccccccccceecccccCCC-------CCccccCCHHHHHHHHHH---------hCCCCccceEEEEcCCcccHH
Q 024306           87 DAVSLEKDVDGFHPLNIGNLAMRGR-------EPLFIPCTPKGCIELLIR---------SGVEIMGKNAVVIGRSNIVGL  150 (269)
Q Consensus        87 ~~i~p~kdvdg~~~~n~g~l~~g~~-------~~~~~p~t~~g~~~~l~~---------~~~~l~gk~v~ViG~gg~vg~  150 (269)
                      ++|+|+|||||||+.|.|+|+.|..       .++|+||||+|++++|++         ++++++|++|+|||+|++||+
T Consensus       112 ~~I~p~KDVDG~~~~n~g~l~~~~~~l~~~~~~~~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~  191 (320)
T 1edz_A          112 QVVCKEKDVEGLNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGR  191 (320)
T ss_dssp             TTSCTTTBTTCCSHHHHHHHHTTCCBSSSSSCSBCCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHH
T ss_pred             hccCcccccCcCChhhhHHHhcCCccccccccCCCcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHH
Confidence            9999999999999999999987621       258999999999999999         788999999999999999999


Q ss_pred             HHHHHHHhCCCEEEEEeCC-----------------------C--CCHhhhcCCCCEEEeccCCCCc-ccCCCcCCCcEE
Q 024306          151 PTSLLLQRHHATVSIVHAL-----------------------T--KNPEQITSEADIVIAAAGVANL-VRGSWLKPGAVV  204 (269)
Q Consensus       151 ~~a~~L~~~ga~Vti~~~~-----------------------t--~~l~~~~~~aDiVIsAtg~p~~-i~~~~~~~g~vV  204 (269)
                      ++|++|.++||+|++|+|+                       +  .++.+++++|||||+|||+|++ ++.+|+++|++|
T Consensus       192 ~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p~~vI~~e~vk~GavV  271 (320)
T 1edz_A          192 PLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVC  271 (320)
T ss_dssp             HHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCTTCCBCTTTSCTTEEE
T ss_pred             HHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECCCCCcceeCHHHcCCCeEE
Confidence            9999999999999999664                       2  5688999999999999999998 999999999999


Q ss_pred             EEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHH
Q 024306          205 LDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRA  265 (269)
Q Consensus       205 iDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~  265 (269)
                      ||+++++              |+| +++.++++++|||   |||||++|||+|+++++++.
T Consensus       272 IDVgi~r--------------D~d-~~v~~~a~~itPv---VGpmT~a~Ll~n~~~a~~~~  314 (320)
T 1edz_A          272 INFACTK--------------NFS-DDVKEKASLYVPM---TGKVTIAMLLRNMLRLVRNV  314 (320)
T ss_dssp             EECSSSC--------------CBC-GGGGTTEEEEESC---CHHHHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCc--------------ccc-hhHHhhCCeeCCC---ccHHHHHHHHHHHHHHHHHh
Confidence            9999875              333 3567889999987   99999999999999999853

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=5.5e-37  Score=277.36  Aligned_cols=218  Identities=18%  Similarity=0.219  Sum_probs=184.2

Q ss_pred             eCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-cc
Q 024306           16 VGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EK   93 (269)
Q Consensus        16 vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~k   93 (269)
                      +| +|.+||+++.+++ +|+++|+++.|..|+.  ++++|.+.++.+++ +++.|+|||+|||+.+  .++++.++| .+
T Consensus        11 iG-~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v--~~~~l~~~v~~l~~-~~~~G~nVTiP~K~~v--~~~ld~ls~~A~   84 (282)
T 3fbt_A           11 IG-EKLGHSHSSYIHKLIFEKVGIKGIYNLFEV--PKEKLKESVDTFKI-IKCGGLNVTIPYKVEV--MKELYEISEKAR   84 (282)
T ss_dssp             EE-SSCCCCHHHHHHHHHHHHHTCCEEEEEEEC--CGGGHHHHHHHHHH-TTCCEEEECTTCTTGG--GGGCSEECHHHH
T ss_pred             EC-CCccccchHHHHHHHHHHcCCCcEEEEEEC--CHHHHHHHHHHHhc-CCCCEEEEcCCCHHHH--HHHHHhcCHHHH
Confidence            35 8999999999886 9999999999999965  57899999999998 6899999999999854  889999999 68


Q ss_pred             cccccccc-e-ecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC
Q 024306           94 DVDGFHPL-N-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT  170 (269)
Q Consensus        94 dvdg~~~~-n-~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t  170 (269)
                      .+++++-+ + .|++. |+||      |..|+++.|++++++++||+++|+|+||+ |++++..|.+.|+ +|++++|+.
T Consensus        85 ~iGAVNTv~~~~g~l~-G~NT------D~~G~~~~L~~~~~~~~~k~vlvlGaGGa-araia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A           85 KIGAVNTLKFSREGIS-GFNT------DYIGFGKMLSKFRVEIKNNICVVLGSGGA-ARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             HHTCCCEEEECSSCEE-EECC------HHHHHHHHHHHTTCCCTTSEEEEECSSTT-HHHHHHHHHHTTCSEEEEEESCH
T ss_pred             HcCCcceEEeeCCEEE-eeCC------cHHHHHHHHHHcCCCccCCEEEEECCcHH-HHHHHHHHHHcCCCEEEEEeCCH
Confidence            88876433 2 35665 6655      55999999999999999999999999998 9999999999998 899999874


Q ss_pred             CC---------------HhhhcCCCCEEEeccCC---CC----cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccc
Q 024306          171 KN---------------PEQITSEADIVIAAAGV---AN----LVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVC  228 (269)
Q Consensus       171 ~~---------------l~~~~~~aDiVIsAtg~---p~----~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd  228 (269)
                      ..               +.+ + ++|+|||||+.   |+    +++.++++++.+|+|+.|+|.+|       +|+    
T Consensus       157 ~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~~pi~~~~l~~~~~v~DlvY~P~~T-------~ll----  223 (282)
T 3fbt_A          157 EKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVET-------LFL----  223 (282)
T ss_dssp             HHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTCCSSCHHHHTTCSEEEESCCSSSSC-------HHH----
T ss_pred             HHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCccCCCCHHHcCCCCEEEEEeeCCCCC-------HHH----
Confidence            21               112 3 89999999973   43    36778899999999999999988       688    


Q ss_pred             hHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024306          229 YEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  269 (269)
Q Consensus       229 ~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~~  269 (269)
                        ..++..|+.  +.+|.+     ||++|++++||+|+|.+
T Consensus       224 --~~A~~~G~~--~~~Gl~-----MLv~Qa~~~f~lwtg~~  255 (282)
T 3fbt_A          224 --KYARESGVK--AVNGLY-----MLVSQAAASEEIWNDIS  255 (282)
T ss_dssp             --HHHHHTTCE--EECSHH-----HHHHHHHHHHHHHHTCC
T ss_pred             --HHHHHCcCe--EeCcHH-----HHHHHHHHHHHHHcCCC
Confidence              447888984  467785     99999999999999963

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=100.00  E-value=3.9e-36  Score=275.69  Aligned_cols=221  Identities=20%  Similarity=0.270  Sum_probs=186.0

Q ss_pred             EeCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-c
Q 024306           15 LVGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (269)
Q Consensus        15 ~vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~   92 (269)
                      .+| +|.+||+++.+++ +|+++|+++.|..|+.  ++++|.+.++.++. +++.|+|||+|||+.+  .++++.++| +
T Consensus        42 viG-~Pi~hS~SP~ihn~~f~~~Gl~~~Y~~~~v--~~~~l~~~~~~l~~-~~~~G~nVTiP~K~~v--~~~lD~ls~~A  115 (315)
T 3tnl_A           42 LIA-TPIRHSLSPTMHNEAFAKLGLDYVYLAFEV--GDKELKDVVQGFRA-MNLRGWNVSMPNKTNI--HKYLDKLSPAA  115 (315)
T ss_dssp             EEE-SSCTTCSHHHHHHHHHHHHTCCEEEEEEEC--CHHHHHHHHHHHHH-TTCCEEEECTTSTTTG--GGGCSEECHHH
T ss_pred             EEC-CCccccccHHHHHHHHHHcCCCcEEEEEec--CHHHHHHHHHHHhc-CCCCEEEEcCCChHHH--HHHHHhcCHHH
Confidence            446 8999999999998 9999999999999965  68999999999998 6999999999999855  889999999 6


Q ss_pred             cccccccc-ce-ecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024306           93 KDVDGFHP-LN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (269)
Q Consensus        93 kdvdg~~~-~n-~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  169 (269)
                      +.+.+++- ++ .|++. |+||      |+.|+++.|++.+++++||+++|+|+||+ |++++..|+++|+ +|++++|+
T Consensus       116 ~~iGAVNTi~~~~g~l~-G~NT------D~~Gf~~~L~~~~~~l~gk~~lVlGaGG~-g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          116 ELVGAVNTVVNDDGVLT-GHIT------DGTGYMRALKEAGHDIIGKKMTICGAGGA-ATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             HHHTCCSEEEEETTEEE-EECC------HHHHHHHHHHHTTCCCTTSEEEEECCSHH-HHHHHHHHHHTTCSEEEEEECS
T ss_pred             HHhCccceEEecCCEEE-EeCC------CHHHHHHHHHHcCCCccCCEEEEECCChH-HHHHHHHHHHCCCCEEEEEECC
Confidence            88777632 33 35565 6655      56999999999999999999999999998 9999999999998 89999998


Q ss_pred             CC-----------------------------CHhhhcCCCCEEEeccCC---CC----cc-cCCCcCCCcEEEEeeecCC
Q 024306          170 TK-----------------------------NPEQITSEADIVIAAAGV---AN----LV-RGSWLKPGAVVLDVGTCPV  212 (269)
Q Consensus       170 t~-----------------------------~l~~~~~~aDiVIsAtg~---p~----~i-~~~~~~~g~vViDv~~~~~  212 (269)
                      .+                             ++.+.+.++|+|||+|+.   |+    ++ +.++++++.+|+|+.|+|.
T Consensus       188 ~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~~~~V~DlvY~P~  267 (315)
T 3tnl_A          188 DDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPT  267 (315)
T ss_dssp             STTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECSSTTSTTSTTCCSCCCGGGCCTTCEEEESCCSSS
T ss_pred             CchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECccCCCCCCCCCCCCCcHHHcCCCCEEEEeccCCC
Confidence            21                             022345689999999973   33    35 6778999999999999999


Q ss_pred             CCCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024306          213 DDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  269 (269)
Q Consensus       213 ~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~~  269 (269)
                      +|       +|+      ..++++|+.  +.+|.+     ||++|++++||+|+|..
T Consensus       268 ~T-------~ll------~~A~~~G~~--~~~Gl~-----MLv~Qa~~af~lwtG~~  304 (315)
T 3tnl_A          268 KT-------RLL------EIAEEQGCQ--TLNGLG-----MMLWQGAKAFEIWTHKE  304 (315)
T ss_dssp             SC-------HHH------HHHHHTTCE--EECSHH-----HHHHHHHHHHHHHHSSC
T ss_pred             CC-------HHH------HHHHHCCCe--EeCcHH-----HHHHHHHHHHHHHhCCC
Confidence            88       688      447888984  477785     99999999999999963

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=1.1e-36  Score=273.46  Aligned_cols=220  Identities=15%  Similarity=0.141  Sum_probs=183.4

Q ss_pred             eCCCcchHHHHHH-HHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-cc
Q 024306           16 VGERRDSQTYVRN-KIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EK   93 (269)
Q Consensus        16 vg~~~~s~~y~~~-~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~k   93 (269)
                      +| +|.+|||++. |+++|+++|+++.|..|+.  ++++|.+.|+.++. ++++|+|||+|||+++  .++++.++| .+
T Consensus         7 iG-~pi~hS~Sp~~h~~~~~~~g~~~~y~~~~~--~~~~l~~~i~~l~~-~~~~G~nVT~P~K~~~--~~~ld~~~~~A~   80 (271)
T 1nyt_A            7 FG-NPIAHSKSPFIHQQFAQQLNIEHPYGRVLA--PINDFINTLNAFFS-AGGKGANVTVPFKEEA--FARADELTERAA   80 (271)
T ss_dssp             EE-SSCTTCSHHHHHHHHHHHHTCCCCEEEEEC--CTTCHHHHHHHHHH-TTCCEEEECTTCHHHH--HHHCSEECHHHH
T ss_pred             EC-CCcccccCHHHHHHHHHHCCCCcEEEEEEc--CHHHHHHHHHHHHh-CCCCeEEEccCCHHHH--HHHHhhcCHHHH
Confidence            45 8999999995 5559999999999999965  57899999999995 7999999999999866  888999999 59


Q ss_pred             cccccccc---eecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306           94 DVDGFHPL---NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus        94 dvdg~~~~---n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      ++++++.+   +.|++. |+|      ||+.|+++.|++++.+++||+++|+|+|++ |++++..|.+.|++|++++|+.
T Consensus        81 ~igavNti~~~~~g~l~-G~n------tD~~G~~~~L~~~~~~l~~k~vlViGaGg~-g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A           81 LAGAVNTLMRLEDGRLL-GDN------TDGVGLLSDLERLSFIRPGLRILLIGAGGA-SRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             HHTCCSEEEECTTSCEE-EEC------CHHHHHHHHHHHHTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSH
T ss_pred             HhCCceEEEEcCCCeEE-EeC------CCHHHHHHHHHhcCcCcCCCEEEEECCcHH-HHHHHHHHHHcCCEEEEEECCH
Confidence            99998654   467775 654      467999999999999999999999999986 9999999999999999999874


Q ss_pred             CC---Hhh--------------hc--CCCCEEEeccCCCCc-----ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecc
Q 024306          171 KN---PEQ--------------IT--SEADIVIAAAGVANL-----VRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGD  226 (269)
Q Consensus       171 ~~---l~~--------------~~--~~aDiVIsAtg~p~~-----i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GD  226 (269)
                      ..   +.+              .+  .++|+||++||.+..     ++.++++++.+|+|+.|+|.+|       ++.  
T Consensus       153 ~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y~p~~t-------~~~--  223 (271)
T 1nyt_A          153 SRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKT-------PFL--  223 (271)
T ss_dssp             HHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSCC-------HHH--
T ss_pred             HHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeccCCcCC-------HHH--
Confidence            21   111              12  379999999996432     6777889999999999999776       555  


Q ss_pred             cchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          227 VCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       227 vd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                          ..++++++ +|+.+|+     .||++|.+++|++|+|.
T Consensus       224 ----~~a~~~G~-~~~~~G~-----~mLv~Q~~~af~~w~g~  255 (271)
T 1nyt_A          224 ----AWCEQRGS-KRNADGL-----GMLVAQAAHAFLLWHGV  255 (271)
T ss_dssp             ----HHHHHTTC-CEEECTH-----HHHHHHHHHHHHHHHSS
T ss_pred             ----HHHHHcCC-CeecCCH-----HHHHHHHHHHHHHHhCC
Confidence                44777887 3357777     59999999999999985

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=100.00  E-value=3.8e-35  Score=265.54  Aligned_cols=223  Identities=17%  Similarity=0.188  Sum_probs=184.1

Q ss_pred             EeCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCC---CCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCC
Q 024306           15 LVGERRDSQTYVRNKIK-ACEEVGIKSIVTEFAD---GCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVS   90 (269)
Q Consensus        15 ~vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~---~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~   90 (269)
                      .+| +|.+||.++.+++ +|+++|+++.|..|+.   .+++++|.+.++.++. +++.|+|||+|||+.+  .++++.++
T Consensus         9 viG-~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~~~~v~~~~l~~~~~~~~~-~~~~G~nVTiP~K~~v--~~~lD~l~   84 (283)
T 3jyo_A            9 LIG-QGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALY-LGFNGLNITHPYKQAV--LPLLDEVS   84 (283)
T ss_dssp             EEE-SSCTTCSHHHHHHHHHHHTTCCEEEEEEETTSTTTTTCCHHHHHHHHHH-TTCCEEEECTTCTTTT--GGGSSEEC
T ss_pred             EEC-CCccccccHHHHHHHHHHcCCCeEEEEEEccccCCCHHHHHHHHHHHhh-CCCCEEEECcccHHHH--HHHhhhCC
Confidence            345 8999999999888 8999999999999954   2456789999999987 6899999999999966  88999999


Q ss_pred             c-cccccccc-cce--ecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEE
Q 024306           91 L-EKDVDGFH-PLN--IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSI  165 (269)
Q Consensus        91 p-~kdvdg~~-~~n--~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti  165 (269)
                      | .+.+.+++ .++  .|++. |+||      |..|+++.|++.+.+++||+++|+|+||+ |++++..|.+.|+ +|++
T Consensus        85 ~~A~~iGAVNTv~~~~~g~l~-G~NT------D~~G~~~~l~~~~~~l~~k~vlVlGaGG~-g~aia~~L~~~G~~~v~i  156 (283)
T 3jyo_A           85 EQATQLGAVNTVVIDATGHTT-GHNT------DVSGFGRGMEEGLPNAKLDSVVQVGAGGV-GNAVAYALVTHGVQKLQV  156 (283)
T ss_dssp             HHHHHHTCCCEEEECTTSCEE-EECH------HHHHHHHHHHHHCTTCCCSEEEEECCSHH-HHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHhCcceEEEECCCCeEE-EecC------CHHHHHHHHHHhCcCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEE
Confidence            9 66655542 222  24454 6555      66999999999999999999999999998 9999999999998 7999


Q ss_pred             EeCCCC------------------------CHhhhcCCCCEEEeccCC---CC---cccCCCcCCCcEEEEeeecCCCCC
Q 024306          166 VHALTK------------------------NPEQITSEADIVIAAAGV---AN---LVRGSWLKPGAVVLDVGTCPVDDP  215 (269)
Q Consensus       166 ~~~~t~------------------------~l~~~~~~aDiVIsAtg~---p~---~i~~~~~~~g~vViDv~~~~~~~~  215 (269)
                      ++|+..                        ++.+.++++|+|||+|+.   |+   .++.++++++.+|+|+.|+|.+| 
T Consensus       157 ~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~Gm~~~~~~pi~~~~l~~~~~v~DlvY~P~~T-  235 (283)
T 3jyo_A          157 ADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHPGTAFDVSCLTKDHWVGDVVYMPIET-  235 (283)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSSTTSTTSCSCSSCGGGCCTTCEEEECCCSSSSC-
T ss_pred             EECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCCCCCCCCCCCCCHHHhCCCCEEEEecCCCCCC-
Confidence            998721                        344556789999999973   32   36788899999999999999988 


Q ss_pred             CCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024306          216 SCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  269 (269)
Q Consensus       216 ~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~~  269 (269)
                            +|+      ..+++.|+  ++.+|.+     ||++|++++||+|+|..
T Consensus       236 ------~ll------~~A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lwtg~~  270 (283)
T 3jyo_A          236 ------ELL------KAARALGC--ETLDGTR-----MAIHQAVDAFRLFTGLE  270 (283)
T ss_dssp             ------HHH------HHHHHHTC--CEECTHH-----HHHHHHHHHHHHHHSCC
T ss_pred             ------HHH------HHHHHCcC--eEeCcHH-----HHHHHHHHHHHHHcCCC
Confidence                  687      44778888  4477785     99999999999999963

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=100.00  E-value=8.4e-36  Score=267.87  Aligned_cols=220  Identities=15%  Similarity=0.111  Sum_probs=183.6

Q ss_pred             eCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-cc
Q 024306           16 VGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EK   93 (269)
Q Consensus        16 vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~k   93 (269)
                      +| +|.+||.++.+++ +|+++|+++.|..|+.  ++++|.+.++.++. ++++|+|||+|||+++  .++++.++| .|
T Consensus         7 iG-~pi~hS~SP~~hn~~~~~~gl~~~y~~~~~--~~~~l~~~i~~~~~-~~~~G~nVT~P~K~~v--~~~ld~~~~~A~   80 (272)
T 1p77_A            7 WG-NPIAQSKSPLIQNKLAAQTHQTMEYIAKLG--DLDAFEQQLLAFFE-EGAKGCNITSPFKERA--YQLADEYSQRAK   80 (272)
T ss_dssp             EE-SSCTTCCHHHHHHHHHHHTTCCEEEEEEEC--CTTTHHHHHHHHHH-TTCCEEEECTTCHHHH--HHHCSEECHHHH
T ss_pred             EC-CCcccccCHHHHHHHHHHCCcCeEEEEEEc--CHHHHHHHHHHHHh-CCCCEEEECcCCHHHH--HHHHhhcCHHHH
Confidence            45 8999999998887 9999999999999965  57899999999995 7999999999999866  889999999 59


Q ss_pred             cccccccc---eecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306           94 DVDGFHPL---NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus        94 dvdg~~~~---n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      ++++++.+   +.|++. |+|+      |+.|+++.|++++.++++|+++|+|+|++ |++++..|.+.|++|++++|+.
T Consensus        81 ~igavNti~~~~~g~l~-g~NT------D~~G~~~~L~~~~~~~~~~~vlvlGaGg~-g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A           81 LAEACNTLKKLDDGKLY-ADNT------DGIGLVTDLQRLNWLRPNQHVLILGAGGA-TKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             HHTCCSEEEECTTSCEE-EECC------HHHHHHHHHHHTTCCCTTCEEEEECCSHH-HHTTHHHHHHTTCEEEEEESSH
T ss_pred             HhCCceEEEEccCCEEE-EecC------CHHHHHHHHHHhCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEECCH
Confidence            99998655   567776 7665      56999999999999999999999999997 9999999999999999999974


Q ss_pred             C---CHh--------------hhc-C-CCCEEEeccCCCCc-----ccCCCcCCCcEEEEeeecCCC-CCCCCCCceeec
Q 024306          171 K---NPE--------------QIT-S-EADIVIAAAGVANL-----VRGSWLKPGAVVLDVGTCPVD-DPSCEYGYRLMG  225 (269)
Q Consensus       171 ~---~l~--------------~~~-~-~aDiVIsAtg~p~~-----i~~~~~~~g~vViDv~~~~~~-~~~~~~~~~l~G  225 (269)
                      .   .+.              +.+ + ++|+||++||.+..     ++.++++++.+|+|+.|+|.+ |       ++. 
T Consensus       153 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y~p~~~t-------~ll-  224 (272)
T 1p77_A          153 SKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDT-------PFI-  224 (272)
T ss_dssp             HHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-------CCCHHHHHHCSCEEESCCCTTSCC-------HHH-
T ss_pred             HHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeeCCCCcCC-------HHH-
Confidence            2   111              123 3 79999999995432     555678889999999999976 6       555 


Q ss_pred             ccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          226 DVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       226 Dvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                           ..++++|+.|+++ |.     .||++|++.+|++|+|.
T Consensus       225 -----~~a~~~G~~~~v~-G~-----~mLv~Qa~~af~~w~g~  256 (272)
T 1p77_A          225 -----ALCKSLGLTNVSD-GF-----GMLVAQAAHSFHLWRGV  256 (272)
T ss_dssp             -----HHHHHTTCCCEEC-SH-----HHHHHHHHHHHHHHHSC
T ss_pred             -----HHHHHcCCCEeeC-CH-----HHHHHHHHHHHHHHhCC
Confidence                 4477788864566 45     59999999999999985

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=100.00  E-value=3.3e-35  Score=265.20  Aligned_cols=220  Identities=15%  Similarity=0.172  Sum_probs=181.4

Q ss_pred             eCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-cc
Q 024306           16 VGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EK   93 (269)
Q Consensus        16 vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~k   93 (269)
                      +| +|.+||.++.+++ +|+++|+++.|..|+.  ++++|.+.++.++. +++.|+|||+|||+.+  .++++.++| .+
T Consensus         6 iG-~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v--~~~~l~~~~~~~~~-~~~~G~nVTiP~K~~v--~~~~d~l~~~A~   79 (277)
T 3don_A            6 IG-NPISHSLSPLMHHANFQSLNLENTYEAINV--PVNQFQDIKKIISE-KSIDGFNVTIPHKERI--IPYLDDINEQAK   79 (277)
T ss_dssp             EE-SSCTTCCHHHHHHHHHHHTTCCCEEEEEEC--CGGGGGGHHHHHHH-TTCSEEEECTTCTTTT--GGGCSEECHHHH
T ss_pred             EC-CCccccccHHHHHHHHHHcCcCcEEEEEEc--CHHHHHHHHHHHhh-CCCCEEEECcCCHHHH--HHHhhhCCHHHH
Confidence            35 8999999999888 8999999999999965  57789999999987 5899999999999966  888999988 55


Q ss_pred             cccccc-cce-ecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC
Q 024306           94 DVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT  170 (269)
Q Consensus        94 dvdg~~-~~n-~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t  170 (269)
                      .+.+++ .++ .|++. |+||      |..|+++.|++.+.+++||+++|+|+||+ |++++..|.+.|+ +|++++|+.
T Consensus        80 ~iGAVNTv~~~~g~l~-G~NT------D~~G~~~~L~~~~~~l~~k~vlvlGaGg~-g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A           80 SVGAVNTVLVKDGKWI-GYNT------DGIGYVNGLKQIYEGIEDAYILILGAGGA-SKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             HHTCCCEEEEETTEEE-EECC------HHHHHHHHHHHHSTTGGGCCEEEECCSHH-HHHHHHHHHTTCCSCCEEECSCG
T ss_pred             HhCceeEEEecCCEEE-EECC------hHHHHHHHHHHhCCCcCCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCCH
Confidence            555442 222 34554 6555      66999999999999999999999999998 9999999999998 899999874


Q ss_pred             C---------------CHhhhcCCCCEEEeccCC---CC---cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccch
Q 024306          171 K---------------NPEQITSEADIVIAAAGV---AN---LVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCY  229 (269)
Q Consensus       171 ~---------------~l~~~~~~aDiVIsAtg~---p~---~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~  229 (269)
                      .               ++.+.++++|+|||+|+.   |+   .++.++++++.+|+|+.|+|.+|       +|+     
T Consensus       152 ~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l~~~~l~~~~~V~D~vY~P~~T-------~ll-----  219 (277)
T 3don_A          152 SRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDSVISLNRLASHTLVSDIVYNPYKT-------PIL-----  219 (277)
T ss_dssp             GGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CCSSCCTTCCSSCEEEESCCSSSSC-------HHH-----
T ss_pred             HHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcCCCCHHHcCCCCEEEEecCCCCCC-------HHH-----
Confidence            2               233457889999999984   32   35778899999999999999877       676     


Q ss_pred             HHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024306          230 EEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  269 (269)
Q Consensus       230 ~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~~  269 (269)
                       ..+++.|+  ++.+|.+     ||++|++.+||+|+|.+
T Consensus       220 -~~A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lwtg~~  251 (277)
T 3don_A          220 -IEAEQRGN--PIYNGLD-----MFVHQGAESFKIWTNLE  251 (277)
T ss_dssp             -HHHHHTTC--CEECTHH-----HHHHHHHHHHHHHHSSC
T ss_pred             -HHHHHCcC--EEeCCHH-----HHHHHHHHHHHHHcCCC
Confidence             44778887  4467785     99999999999999963

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=100.00  E-value=8.1e-35  Score=264.88  Aligned_cols=219  Identities=20%  Similarity=0.242  Sum_probs=185.4

Q ss_pred             eCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-cc
Q 024306           16 VGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EK   93 (269)
Q Consensus        16 vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~k   93 (269)
                      +| +|.+|||++.+++ +|+++|+++.|..|+.  ++++|.++++.++. +++.|+|||+|+|+++  ..+++.++| .+
T Consensus        29 iG-~pi~hS~Sp~~hn~~~~~~Gl~~~Y~~~~~--~~~~l~~~v~~l~~-~~~~G~nVTiP~K~~i--~~~ld~~~~~A~  102 (297)
T 2egg_A           29 IG-FPVEHSLSPLMHNDAFARLGIPARYHLFSV--EPGQVGAAIAGVRA-LGIAGVNVTIPHKLAV--IPFLDEVDEHAR  102 (297)
T ss_dssp             EE-SSCTTCSHHHHHHHHHHHTTCCEEEEEEEC--CTTCHHHHHHHHHH-HTCCEEEECTTCTTTT--GGGCSEECHHHH
T ss_pred             EC-CCcccccCHHHHHHHHHHcCcCcEEEEEEc--CHHHHHHHHHHHhh-CCCCeEEECCcCHHHH--HHHHHHHhHHHH
Confidence            45 8999999999995 9999999999999965  57889999999996 6899999999999987  889999999 69


Q ss_pred             cccccccc--eecccccCCCCCccccCCHHHHHHHHHHhC-CCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024306           94 DVDGFHPL--NIGNLAMRGREPLFIPCTPKGCIELLIRSG-VEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (269)
Q Consensus        94 dvdg~~~~--n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~-~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  169 (269)
                      ++++++.+  +.|++. |+||      |..|+++.|++++ +++++++++|+|+|++ |++++..|.+.|+ +|++++|+
T Consensus       103 ~iGavNti~~~~g~l~-g~nT------d~~G~~~~l~~~~~~~l~~~~vlVlGaGg~-g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          103 RIGAVNTIINNDGRLV-GYNT------DGLGYVQALEEEMNITLDGKRILVIGAGGG-ARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             HHTCCCEEEEETTEEE-EECC------HHHHHHHHHHHHTTCCCTTCEEEEECCSHH-HHHHHHHHHTTTCSEEEEECSS
T ss_pred             HhCCCCeEECcCCeEe-eccC------CHHHHHHHHHHhCCCCCCCCEEEEECcHHH-HHHHHHHHHHCCCCEEEEEeCC
Confidence            99998655  577776 6666      5599999999988 8999999999999997 9999999999998 89999987


Q ss_pred             CC--------------------CHhhhcCCCCEEEeccCCCC-------cccCCCcCCCcEEEEeeecCCCCCCCCCCce
Q 024306          170 TK--------------------NPEQITSEADIVIAAAGVAN-------LVRGSWLKPGAVVLDVGTCPVDDPSCEYGYR  222 (269)
Q Consensus       170 t~--------------------~l~~~~~~aDiVIsAtg~p~-------~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~  222 (269)
                      ..                    ++.+.+.++|+||++||.+.       +++.++++++.+|+|+.|+|.+|       +
T Consensus       175 ~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y~P~~T-------~  247 (297)
T 2egg_A          175 VEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPLET-------K  247 (297)
T ss_dssp             HHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCCSSSSC-------H
T ss_pred             HHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCCCCCCC-------H
Confidence            31                    23345678999999998532       35677899999999999999877       6


Q ss_pred             eecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          223 LMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       223 l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                      |+      ..++++|+. .++ |+     .||++|++++|++|+|.
T Consensus       248 ll------~~A~~~G~~-~v~-Gl-----~MLv~Qa~~af~~w~g~  280 (297)
T 2egg_A          248 WL------KEAKARGAR-VQN-GV-----GMLVYQGALAFEKWTGQ  280 (297)
T ss_dssp             HH------HHHHHTTCE-EEC-SH-----HHHHHHHHHHHHHHHSC
T ss_pred             HH------HHHHHCcCE-EEC-CH-----HHHHHHHHHHHHHHhCC
Confidence            66      446777873 354 55     59999999999999986

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=5.6e-35  Score=264.15  Aligned_cols=219  Identities=16%  Similarity=0.216  Sum_probs=183.0

Q ss_pred             EeCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-c
Q 024306           15 LVGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (269)
Q Consensus        15 ~vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~   92 (269)
                      .+| +|.+|||++.+++ +|+++|+++.|..|+.  ++++|.+.|+.++++ +++|+|||+|||+++  ..+++.+++ .
T Consensus        16 viG-~pi~hS~Sp~~h~~~~~~~gi~~~y~~~~~--~~~~l~~~i~~l~~~-~~~G~nVtiP~k~~i--~~~~d~~~~~a   89 (287)
T 1nvt_A           16 LIG-HPVEHSFSPIMHNAAFKDKGLNYVYVAFDV--LPENLKYVIDGAKAL-GIVGFNVTIPHKIEI--MKYLDEIDKDA   89 (287)
T ss_dssp             EEE-SSCTTCSHHHHHHHHHHHTTCCEEEEEEEC--CGGGGGGHHHHHHHH-TCCEEEECTTSTTGG--GGGCSEECHHH
T ss_pred             EEC-CCcccccCHHHHHHHHHHcCCCcEEEEEEc--CHHHHHHHHHHHHhC-CCCEEEEccCCHHHH--HHHHHhcCHHH
Confidence            446 9999999999955 9999999999999954  689999999999974 899999999999977  778888889 6


Q ss_pred             ccccccccc--eecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306           93 KDVDGFHPL--NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus        93 kdvdg~~~~--n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +++++++.+  +.|++. |+|+      |+.|+++.|++++++++||+++|+|+||+ |++++..|+++| +|++++|+.
T Consensus        90 ~~igavnt~~~~~g~l~-g~nT------d~~G~~~~L~~~~~~l~~k~vlV~GaGgi-G~aia~~L~~~G-~V~v~~r~~  160 (287)
T 1nvt_A           90 QLIGAVNTIKIEDGKAI-GYNT------DGIGARMALEEEIGRVKDKNIVIYGAGGA-ARAVAFELAKDN-NIIIANRTV  160 (287)
T ss_dssp             HHHTCCCEEEEETTEEE-EECC------HHHHHHHHHHHHHCCCCSCEEEEECCSHH-HHHHHHHHTSSS-EEEEECSSH
T ss_pred             HHhCceeeEEeeCCEEE-EecC------CHHHHHHHHHHhCCCcCCCEEEEECchHH-HHHHHHHHHHCC-CEEEEECCH
Confidence            888887544  366666 6544      78999999999999999999999999976 999999999999 999999874


Q ss_pred             CC---H---------------------hhhcCCCCEEEeccCCCC-------cc-cCCCcCCCcEEEEeeecCCCCCCCC
Q 024306          171 KN---P---------------------EQITSEADIVIAAAGVAN-------LV-RGSWLKPGAVVLDVGTCPVDDPSCE  218 (269)
Q Consensus       171 ~~---l---------------------~~~~~~aDiVIsAtg~p~-------~i-~~~~~~~g~vViDv~~~~~~~~~~~  218 (269)
                      ..   +                     .+.+.++|+||+++|...       ++ +.++++++.+|+|++|+|.+|    
T Consensus       161 ~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~~~~~~~~~~~~~~~~~l~~~~~v~Dv~y~p~~t----  236 (287)
T 1nvt_A          161 EKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLET----  236 (287)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSC----
T ss_pred             HHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCCCCCCCCCCCCCCCHHHcCCCCEEEEeeeCCccC----
Confidence            21   1                     234567999999998532       25 678899999999999998766    


Q ss_pred             CCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          219 YGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       219 ~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                         +++      ..++++++.  +.+|+     .||++|++++|++|+|.
T Consensus       237 ---~ll------~~a~~~G~~--~~~Gl-----~mL~~Qa~~af~~w~g~  270 (287)
T 1nvt_A          237 ---VLL------KEAKKVNAK--TINGL-----GMLIYQGAVAFKIWTGV  270 (287)
T ss_dssp             ---HHH------HHHHTTTCE--EECTH-----HHHHHHHHHHHHHHHSS
T ss_pred             ---HHH------HHHHHCCCE--EeCcH-----HHHHHHHHHHHHHHhCC
Confidence               666      346677874  46677     49999999999999985

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=100.00  E-value=8.7e-35  Score=261.80  Aligned_cols=221  Identities=13%  Similarity=0.102  Sum_probs=178.1

Q ss_pred             eCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-cc
Q 024306           16 VGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EK   93 (269)
Q Consensus        16 vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~k   93 (269)
                      +| +|.+||.++.+++ +|+++|+++.|..|+.  ++++|.+.++.+.+ +++.|+|||+|||+.+  .++++.++| .+
T Consensus         8 iG-~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v--~~~~l~~~~~~~~~-~~~~G~nVTiP~K~~v--~~~~d~l~~~A~   81 (272)
T 3pwz_A            8 IG-RPINHTKSPLIHGLFAQASNQQLEYGAIEG--SLDDFEAQVLQFRS-EGGKGMNITAPFKLRA--FELADRRSERAQ   81 (272)
T ss_dssp             EE-SSCTTCSHHHHHHHHHHHTTCCEEEEEEEC--CTTTHHHHHHHHHH-TTCCEEEECTTCHHHH--HHHCSEECHHHH
T ss_pred             EC-CCcCCcccHHHHHHHHHHcCCCcEEEEEEc--CHHHHHHHHHHHhh-CCCCEEEECchhHHHH--HHHHhhCCHHHH
Confidence            35 8999999999888 8999999999999966  46789999999987 6899999999999844  778888888 55


Q ss_pred             cccccc-cce-ecccccCCCCCccccCCHHHHHHH-HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024306           94 DVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIEL-LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (269)
Q Consensus        94 dvdg~~-~~n-~g~l~~g~~~~~~~p~t~~g~~~~-l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  169 (269)
                      .+.+++ .++ .|++. |+||      |..|+++. |++.+.+++||+++|+|+||+ |++++..|.+.|+ +|++++|+
T Consensus        82 ~iGAvNTv~~~~g~l~-G~NT------D~~G~~~~lL~~~~~~l~~k~~lvlGaGg~-~~aia~~L~~~G~~~v~i~~R~  153 (272)
T 3pwz_A           82 LARAANALKFEDGRIV-AENF------DGIGLLRDIEENLGEPLRNRRVLLLGAGGA-VRGALLPFLQAGPSELVIANRD  153 (272)
T ss_dssp             HHTCCSEEEEETTEEE-EECC------HHHHHHHHHHTTSCCCCTTSEEEEECCSHH-HHHHHHHHHHTCCSEEEEECSC
T ss_pred             HhCccceEEccCCeEE-EecC------CHHHHHHHHHHHcCCCccCCEEEEECccHH-HHHHHHHHHHcCCCEEEEEeCC
Confidence            554432 222 34454 5555      66999997 988889999999999999998 9999999999996 89999987


Q ss_pred             CCC---H--------------hhhc-CCCCEEEeccCCC---C--cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecc
Q 024306          170 TKN---P--------------EQIT-SEADIVIAAAGVA---N--LVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGD  226 (269)
Q Consensus       170 t~~---l--------------~~~~-~~aDiVIsAtg~p---~--~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GD  226 (269)
                      ...   +              .+.- .++|+|||+|+..   +  .++.++++++.+|+|+.|+|.+|       +|+  
T Consensus       154 ~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~~~~~i~~~~l~~~~~V~DlvY~P~~T-------~ll--  224 (272)
T 3pwz_A          154 MAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTADLPPLPADVLGEAALAYELAYGKGLT-------PFL--  224 (272)
T ss_dssp             HHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGTCCCCCCGGGGTTCSEEEESSCSCCSC-------HHH--
T ss_pred             HHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeecCCCCC-------HHH--
Confidence            421   1              1111 6799999999842   2  46788999999999999999888       677  


Q ss_pred             cchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024306          227 VCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  269 (269)
Q Consensus       227 vd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~~  269 (269)
                          ..+++.|+.. +.+|.+     ||++|++++||+|+|..
T Consensus       225 ----~~A~~~G~~~-~~~Gl~-----ML~~Qa~~~f~lwtg~~  257 (272)
T 3pwz_A          225 ----RLAREQGQAR-LADGVG-----MLVEQAAEAFAWWRGVR  257 (272)
T ss_dssp             ----HHHHHHSCCE-EECTHH-----HHHHHHHHHHHHHHSCC
T ss_pred             ----HHHHHCCCCE-EECCHH-----HHHHHHHHHHHHHhCCC
Confidence                4477788741 467775     99999999999999963

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=100.00  E-value=1.5e-34  Score=264.87  Aligned_cols=220  Identities=18%  Similarity=0.209  Sum_probs=179.2

Q ss_pred             eCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-cc
Q 024306           16 VGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EK   93 (269)
Q Consensus        16 vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~k   93 (269)
                      +| +|.+||.++.+++ +|+++|+++.|..|+.  ++++|.+.++.+.. .++.|+|||+|||+.+  .++++.++| ++
T Consensus        37 iG-~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v--~~~~l~~~~~~~~~-~~~~G~nVTiP~K~~v--~~~lD~ls~~A~  110 (312)
T 3t4e_A           37 MA-YPIRHSLSPEMQNKALEKAGLPYTYMAFEV--DNTTFASAIEGLKA-LKMRGTGVSMPNKQLA--CEYVDELTPAAK  110 (312)
T ss_dssp             EE-SCCTTCSHHHHHHHHHHHHTCSEEEEEEEC--CTTTHHHHHHHHHH-TTCCEEEECTTSHHHH--GGGCSEECHHHH
T ss_pred             EC-CCccccccHHHHHHHHHHcCCCcEEEeEec--CHHHHHHHHHHHhh-CCCCEEEECchhHHHH--HHHhhhcCHHHH
Confidence            45 8999999999888 9999999999999965  46789999999987 5899999999999743  677777777 55


Q ss_pred             cccccc-cce-ecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC
Q 024306           94 DVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT  170 (269)
Q Consensus        94 dvdg~~-~~n-~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t  170 (269)
                      .+.+++ .++ .|++. |+||      |..|+++.|++.+++++||+++|+|+||+ |++++..|.+.|+ +|+|++|+.
T Consensus       111 ~iGAVNTi~~~~g~l~-G~NT------D~~Gf~~~L~~~~~~l~gk~~lVlGAGGa-araia~~L~~~G~~~v~v~nRt~  182 (312)
T 3t4e_A          111 LVGAINTIVNDDGYLR-GYNT------DGTGHIRAIKESGFDMRGKTMVLLGAGGA-ATAIGAQAAIEGIKEIKLFNRKD  182 (312)
T ss_dssp             HHTCCSEEEEETTEEE-EECH------HHHHHHHHHHHTTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEEECSS
T ss_pred             HhCceeEEEecCCEEE-EeCC------cHHHHHHHHHhcCCCcCCCEEEEECcCHH-HHHHHHHHHHcCCCEEEEEECCC
Confidence            555442 222 34554 6655      56999999999999999999999999998 9999999999998 799999982


Q ss_pred             C--------------------------CH---hhhcCCCCEEEeccCC---CC---cc--cCCCcCCCcEEEEeeecCCC
Q 024306          171 K--------------------------NP---EQITSEADIVIAAAGV---AN---LV--RGSWLKPGAVVLDVGTCPVD  213 (269)
Q Consensus       171 ~--------------------------~l---~~~~~~aDiVIsAtg~---p~---~i--~~~~~~~g~vViDv~~~~~~  213 (269)
                      +                          ++   .+.+.++|+|||+|+.   |.   .+  +.++++++.+|+|+.|+|.+
T Consensus       183 ~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~  262 (312)
T 3t4e_A          183 DFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSLLRPELLVTECVYNPHM  262 (312)
T ss_dssp             THHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEEECSSTTSTTSTTCCSCCCGGGSCTTCEEEECCCSSSS
T ss_pred             chHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEEEECCcCCCCCCCCCcccCCHHHcCCCCEEEEeccCCCC
Confidence            1                          11   2345679999999983   22   22  55789999999999999998


Q ss_pred             CCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024306          214 DPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  269 (269)
Q Consensus       214 ~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~~  269 (269)
                      |       +|+      ..+++.|+.  +.+|.+     ||++|++++||+|+|..
T Consensus       263 T-------~ll------~~A~~~G~~--~~~Gl~-----MLv~Qa~~af~lwtg~~  298 (312)
T 3t4e_A          263 T-------KLL------QQAQQAGCK--TIDGYG-----MLLWQGAEQFELWTGKA  298 (312)
T ss_dssp             C-------HHH------HHHHHTTCE--EECHHH-----HHHHHHHHHHHHHHSSC
T ss_pred             C-------HHH------HHHHHCCCe--EECcHH-----HHHHHHHHHHHHHhCCC
Confidence            8       788      447888984  477885     99999999999999963

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=100.00  E-value=1.8e-34  Score=260.95  Aligned_cols=222  Identities=14%  Similarity=0.140  Sum_probs=179.4

Q ss_pred             EeCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-c
Q 024306           15 LVGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (269)
Q Consensus        15 ~vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~   92 (269)
                      .+| +|.+||.++.+++ +|+++|+++.|..|+.  ++++|.+.++.+.. +++.|+|||+|||+.+  .++++.++| .
T Consensus        13 viG-~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v--~~~~l~~~~~~~~~-~~~~G~nVTiP~K~~v--~~~ld~l~~~A   86 (281)
T 3o8q_A           13 VFG-NPINHSKSPFIHTLFARQTQQSMIYTAQCV--PVDGFTEAAKHFFA-QGGRGCNVTVPFKEEA--YRFADRLTERA   86 (281)
T ss_dssp             EEC-CSSSCCCHHHHHHHHHHHTTCCEEEEEECC--CTTCHHHHHHHHHH-TTCCEEEECTTSHHHH--HHHCSEECHHH
T ss_pred             EEC-CCCCccCcHHHHHHHHHHcCCCcEEEEeec--CHHHHHHHHHHHHh-CCCCEEEECCccHHHH--HHHHhhcCHHH
Confidence            346 8999999999998 8999999999999965  46789999999986 6899999999999844  778888888 5


Q ss_pred             ccccccc-cce--ecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeC
Q 024306           93 KDVDGFH-PLN--IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  168 (269)
Q Consensus        93 kdvdg~~-~~n--~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  168 (269)
                      +.+.+++ .++  .|++. |+||      |..|+++.|++.+.+++||+++|+|+||+ |++++..|.+.|+ +|++++|
T Consensus        87 ~~iGAVNTv~~~~~g~l~-G~NT------D~~G~~~~L~~~~~~l~~k~vlvlGaGg~-g~aia~~L~~~G~~~v~v~~R  158 (281)
T 3o8q_A           87 RLAGAVNTLKKLDDGEIL-GDNT------DGEGLVQDLLAQQVLLKGATILLIGAGGA-ARGVLKPLLDQQPASITVTNR  158 (281)
T ss_dssp             HHHTCCSEEEECTTSCEE-EECC------HHHHHHHHHHHTTCCCTTCEEEEECCSHH-HHHHHHHHHTTCCSEEEEEES
T ss_pred             HhhCeeeEEEEcCCCcEE-EEec------HHHHHHHHHHHhCCCccCCEEEEECchHH-HHHHHHHHHhcCCCeEEEEEC
Confidence            5555542 221  24454 5555      66999999999999999999999999997 9999999999996 8999999


Q ss_pred             CCCC---H---------------hhhcCCCCEEEeccCCC-----CcccCCCcCCCcEEEEeeecCCCCCCCCCCceeec
Q 024306          169 LTKN---P---------------EQITSEADIVIAAAGVA-----NLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMG  225 (269)
Q Consensus       169 ~t~~---l---------------~~~~~~aDiVIsAtg~p-----~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~G  225 (269)
                      +...   +               .+...++|+|||+|+..     ..++.++++++.+|+|+.|+|.+|       +|+ 
T Consensus       159 ~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~~~~l~~~~l~~~~~V~DlvY~P~~T-------~ll-  230 (281)
T 3o8q_A          159 TFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELPAIDPVIFSSRSVCYDMMYGKGYT-------VFN-  230 (281)
T ss_dssp             SHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC----CSCCGGGEEEEEEEEESCCCSSCC-------HHH-
T ss_pred             CHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCCCCCCCHHHhCcCCEEEEecCCCccC-------HHH-
Confidence            7421   1               11226799999999853     146778899999999999999888       677 


Q ss_pred             ccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024306          226 DVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  269 (269)
Q Consensus       226 Dvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~~  269 (269)
                           ..+++.|+.. +.+|.+     ||++|++++||+|+|..
T Consensus       231 -----~~A~~~G~~~-~~~Gl~-----Mlv~Qa~~~f~lwtg~~  263 (281)
T 3o8q_A          231 -----QWARQHGCAQ-AIDGLG-----MLVGQAAESFMLWRGLR  263 (281)
T ss_dssp             -----HHHHHTTCSE-EECTHH-----HHHHHHHHHHHHHHSCC
T ss_pred             -----HHHHHCCCCE-EECcHH-----HHHHHHHHHHHHHhCCC
Confidence                 3477788741 467775     99999999999999963

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.98  E-value=1.4e-32  Score=247.04  Aligned_cols=218  Identities=17%  Similarity=0.261  Sum_probs=182.4

Q ss_pred             EeCCCcchHHHHHHHH-HHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-c
Q 024306           15 LVGERRDSQTYVRNKI-KACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (269)
Q Consensus        15 ~vg~~~~s~~y~~~~~-~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~   92 (269)
                      ++| +|.+|||++.++ ++|+++|+++.|..|+.  ++++|.+.++.++. ++++|+|||+|+|+++  ..+++.+++ .
T Consensus        17 liG-~pi~hs~sp~~h~~~~~~~g~~~~y~~~~~--~~~~l~~~i~~l~~-~~~~G~nvtiP~k~~i--~~~ld~l~~~A   90 (275)
T 2hk9_A           17 VIG-FPVKHSLSPVFQNALIRYAGLNAVYLAFEI--NPEELKKAFEGFKA-LKVKGINVTVPFKEEI--IPLLDYVEDTA   90 (275)
T ss_dssp             EEE-SSCTTCSHHHHHHHHHHHHTCSEEEEEEEC--CGGGHHHHHHHHHH-HTCCEEEECTTSTTTT--GGGCSEECHHH
T ss_pred             EEC-CCcccccCHHHHHHHHHHcCCCcEEEEEEC--CHHHHHHHHHHHHh-CCCCEEEECccCHHHH--HHHHHHhhHHH
Confidence            668 999999999777 59999999999999964  68899999999997 6899999999999977  888999999 5


Q ss_pred             ccccccccc--eecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306           93 KDVDGFHPL--NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus        93 kdvdg~~~~--n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +++++++.+  +.|++. |+|      +|+.|++..|++++++++|++++|||+|++ |++++..|.+.|++|++++|+.
T Consensus        91 ~~~gavnti~~~~g~~~-g~n------Td~~G~~~~l~~~~~~~~~~~v~iiGaG~~-g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A           91 KEIGAVNTVKFENGKAY-GYN------TDWIGFLKSLKSLIPEVKEKSILVLGAGGA-SRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             HHHTCCCEEEEETTEEE-EEC------CHHHHHHHHHHHHCTTGGGSEEEEECCSHH-HHHHHHHHHHHTCEEEEECSSH
T ss_pred             HHhCCcceEEeeCCEEE-eec------CCHHHHHHHHHHhCCCcCCCEEEEECchHH-HHHHHHHHHHcCCEEEEEECCH
Confidence            999888655  466665 544      577999999999999999999999999997 9999999999999999999873


Q ss_pred             C---------------CHhhhcCCCCEEEeccCCC------CcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccch
Q 024306          171 K---------------NPEQITSEADIVIAAAGVA------NLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCY  229 (269)
Q Consensus       171 ~---------------~l~~~~~~aDiVIsAtg~p------~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~  229 (269)
                      .               ++.+.++++|+||++|+..      ..++.++++++.+|+|++|  ..+       +++     
T Consensus       163 ~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i~~~~l~~g~~viDv~~--~~t-------~ll-----  228 (275)
T 2hk9_A          163 EKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFNYDLIKKDHVVVDIIY--KET-------KLL-----  228 (275)
T ss_dssp             HHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSSCGGGCCTTSEEEESSS--SCC-------HHH-----
T ss_pred             HHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCCCHHHcCCCCEEEEcCC--ChH-------HHH-----
Confidence            1               4566778999999999853      2355677899999999999  444       565     


Q ss_pred             HHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          230 EEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       230 ~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                      +. +++.++ +.++|      ..||+.|++.+|++|+|.
T Consensus       229 ~~-a~~~g~-~~v~g------~~mlv~q~~~a~~~w~g~  259 (275)
T 2hk9_A          229 KK-AKEKGA-KLLDG------LPMLLWQGIEAFKIWNGC  259 (275)
T ss_dssp             HH-HHHTTC-EEECS------HHHHHHHHHHHHHHHHCC
T ss_pred             HH-HHHCcC-EEECC------HHHHHHHHHHHHHHHHCC
Confidence            33 555665 34565      579999999999999986

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.97  E-value=7.7e-32  Score=240.25  Aligned_cols=217  Identities=18%  Similarity=0.244  Sum_probs=181.4

Q ss_pred             EeCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-c
Q 024306           15 LVGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (269)
Q Consensus        15 ~vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~   92 (269)
                      .+| +|.+|||++.+++ +|+++|+++.|..++  ++++++.+.++.++.+  ++|++||+|+|+++  ..+++.+++ .
T Consensus         6 ~~G-~pi~hs~sp~~h~~~~~~~g~~~~y~~~~--~~~~~l~~~i~~l~~~--~~G~~vt~P~k~~i--~~~~~~l~~~a   78 (263)
T 2d5c_A            6 VLG-HPVAHSLSPAMHAFALESLGLEGSYEAWD--TPLEALPGRLKEVRRA--FRGVNLTLPLKEAA--LAHLDWVSPEA   78 (263)
T ss_dssp             EEE-SSCTTCSHHHHHHHHHHHTTCCEEEEEEE--CCGGGHHHHHHHHHHH--CSEEEECTTCTTGG--GGGCSEECHHH
T ss_pred             EEC-CCcccccCHHHHHHHHHHcCCCCEEEEEe--CCHHHHHHHHHhcccc--CceEEEcccCHHHH--HHHHHHHhHHH
Confidence            346 8999999965555 999999999999994  4688999999999995  99999999999977  788899999 9


Q ss_pred             ccccccccc--eecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306           93 KDVDGFHPL--NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus        93 kdvdg~~~~--n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +++++++.+  +.|++. |+++      +..|++..|++++++++| +++|||+|++ |++++..|.+.|++|++++|+.
T Consensus        79 ~~~gavn~i~~~~g~~~-g~nt------d~~g~~~~l~~~~~~l~~-~v~iiG~G~~-g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A           79 QRIGAVNTVLQVEGRLF-GFNT------DAPGFLEALKAGGIPLKG-PALVLGAGGA-GRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             HHHTCCCEEEEETTEEE-EECC------HHHHHHHHHHHTTCCCCS-CEEEECCSHH-HHHHHHHHHHTTCCEEEECSSH
T ss_pred             HHhCCCCcEEccCCeEE-EeCC------CHHHHHHHHHHhCCCCCC-eEEEECCcHH-HHHHHHHHHHCCCEEEEEECCH
Confidence            999999777  677776 6555      458999999999999999 9999999996 9999999999999999999874


Q ss_pred             C--------------CHhhhcCCCCEEEeccCCC------CcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchH
Q 024306          171 K--------------NPEQITSEADIVIAAAGVA------NLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYE  230 (269)
Q Consensus       171 ~--------------~l~~~~~~aDiVIsAtg~p------~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~  230 (269)
                      .              ++.+. +++|+||++|+.+      ..++.++++++.+|+|++|+|.++       ++.      
T Consensus       150 ~~~~~l~~~~~~~~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~~~~l~~g~~viD~~~~p~~t-------~l~------  215 (263)
T 2d5c_A          150 QRALALAEEFGLRAVPLEKA-REARLLVNATRVGLEDPSASPLPAELFPEEGAAVDLVYRPLWT-------RFL------  215 (263)
T ss_dssp             HHHHHHHHHHTCEECCGGGG-GGCSEEEECSSTTTTCTTCCSSCGGGSCSSSEEEESCCSSSSC-------HHH------
T ss_pred             HHHHHHHHHhccchhhHhhc-cCCCEEEEccCCCCCCCCCCCCCHHHcCCCCEEEEeecCCccc-------HHH------
Confidence            2              23455 7899999999954      235567889999999999987655       455      


Q ss_pred             HHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          231 EAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       231 ~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                      +.+++.++ +.++|      ..||+.|++.+|++|+|.
T Consensus       216 ~~a~~~g~-~~v~g------~~mlv~q~~~a~~~w~g~  246 (263)
T 2d5c_A          216 REAKAKGL-KVQTG------LPMLAWQGALAFRLWTGL  246 (263)
T ss_dssp             HHHHHTTC-EEECS------HHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHCcC-EEECc------HHHHHHHHHHHHHHHhCC
Confidence            33566676 45655      469999999999999985

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=99.97  E-value=1.2e-32  Score=247.40  Aligned_cols=213  Identities=14%  Similarity=0.136  Sum_probs=168.1

Q ss_pred             eCCCcchHHHHHHHHH-HH----HHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCC
Q 024306           16 VGERRDSQTYVRNKIK-AC----EEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVS   90 (269)
Q Consensus        16 vg~~~~s~~y~~~~~~-~~----~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~   90 (269)
                      +| +|.+||.++.+++ +|    +++|+++.|..|+.    +++.+.++.+.. +++.|+|||+|||+.+  .++++.++
T Consensus         9 iG-~Pi~hS~SP~~hn~~f~~~~~~~gl~~~Y~~~~v----~~l~~~~~~~~~-~~~~G~nVTiP~K~~v--~~~~d~l~   80 (269)
T 3phh_A            9 FG-NPIKHSKSPLIHNACFLTFQKELRFLGHYHPILL----PLESHIKSEFLH-LGLSGANVTLPFKERA--FQVCDKIK   80 (269)
T ss_dssp             EE-SSCTTCCHHHHHHHHHHHHHHHHSSEEEEEEEEC----CSSSCHHHHHHH-TTEEEEEECTTCHHHH--HHHSSEEC
T ss_pred             EC-CCccccccHHHHHHHHHHHHHHcCCCCEEeeEEh----hhHHHHHHHHhh-CCCCEEEEccccHHHH--HHHHhhcC
Confidence            35 8999999999888 88    99999999999976    457777777776 6899999999999844  77888888


Q ss_pred             c-cccccccc-cce-ecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEe
Q 024306           91 L-EKDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH  167 (269)
Q Consensus        91 p-~kdvdg~~-~~n-~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~  167 (269)
                      | .+.+.+++ .++ .|++. |+||      |..|+++.|++.+    +|+++|+|+||+ |++++..|.+.|++|++++
T Consensus        81 ~~A~~iGAVNTi~~~~g~l~-G~NT------D~~Gf~~~L~~~~----~k~vlvlGaGGa-araia~~L~~~G~~v~V~n  148 (269)
T 3phh_A           81 GIALECGAVNTLVLENDELV-GYNT------DALGFYLSLKQKN----YQNALILGAGGS-AKALACELKKQGLQVSVLN  148 (269)
T ss_dssp             GGGGGTTCCCEEEEETTEEE-EECC------HHHHHHHHCC-------CCEEEEECCSHH-HHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHhCceeEEEeeCCEEE-EecC------hHHHHHHHHHHcC----CCEEEEECCCHH-HHHHHHHHHHCCCEEEEEe
Confidence            8 55544432 222 34554 6555      6699999998754    999999999998 9999999999999999999


Q ss_pred             CCCCCHhhh------------cCCCCEEEeccCC---CC-cccCC----CcCCCcEEEEeeecCCCCCCCCCCceeeccc
Q 024306          168 ALTKNPEQI------------TSEADIVIAAAGV---AN-LVRGS----WLKPGAVVLDVGTCPVDDPSCEYGYRLMGDV  227 (269)
Q Consensus       168 ~~t~~l~~~------------~~~aDiVIsAtg~---p~-~i~~~----~~~~g~vViDv~~~~~~~~~~~~~~~l~GDv  227 (269)
                      |+....++.            +.++|+|||+|+.   ++ .++.+    .++++.+|+|+.|+| +|       +|+   
T Consensus       149 Rt~~ka~~la~~~~~~~~~~~l~~~DiVInaTp~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P-~T-------~ll---  217 (269)
T 3phh_A          149 RSSRGLDFFQRLGCDCFMEPPKSAFDLIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGF-LT-------PFL---  217 (269)
T ss_dssp             SSCTTHHHHHHHTCEEESSCCSSCCSEEEECCTTCCCCSCSSCHHHHHHHHHHCSEEEESCCSS-CC-------HHH---
T ss_pred             CCHHHHHHHHHCCCeEecHHHhccCCEEEEcccCCCCCCCCCChHHHHhhCCCCCEEEEeCCCC-ch-------HHH---
Confidence            986543221            2479999999984   22 36666    678899999999999 88       677   


Q ss_pred             chHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024306          228 CYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  269 (269)
Q Consensus       228 d~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~~  269 (269)
                         ..+++.|+  ++.+|.+     ||++|++++||+|+|..
T Consensus       218 ---~~A~~~G~--~~~~Gl~-----MLv~Qa~~~f~lw~g~~  249 (269)
T 3phh_A          218 ---SLAKELKT--PFQDGKD-----MLIYQAALSFEKFSASQ  249 (269)
T ss_dssp             ---HHHHHTTC--CEECSHH-----HHHHHHHHHHHHHTTTS
T ss_pred             ---HHHHHCcC--EEECCHH-----HHHHHHHHHHHHHhCCC
Confidence               44778888  4577785     99999999999999963

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=99.97  E-value=1.7e-31  Score=240.29  Aligned_cols=215  Identities=14%  Similarity=0.242  Sum_probs=171.0

Q ss_pred             EeCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-c
Q 024306           15 LVGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (269)
Q Consensus        15 ~vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~   92 (269)
                      .+| +|  ||.++.+++ +|+++|+++.|..|+    +++|.+.++.+.. .++.|+|||+|||+.+  ..+++.+++ .
T Consensus        12 viG-~P--hS~SP~~hn~~~~~~gl~~~Y~~~~----~~~l~~~~~~~~~-~~~~G~nVTiP~K~~i--~~~~d~~~~~A   81 (271)
T 1npy_A           12 LSG-RP--SNFGTTFHNYLYDKLGLNFIYKAFT----TQDIEHAIKGVRA-LGIRGCAVSMPFKETC--MPFLDEIHPSA   81 (271)
T ss_dssp             ECS-SC--CSHHHHHHHHHHHHHTCCEEEEEEC----CSCHHHHHHHHHH-HTCCEEEECTTCTTTT--GGGCSEECHHH
T ss_pred             EEC-CC--CcccHHHHHHHHHHcCCCcEEEeec----hhhHHHHHHHhcc-CCCCeEEECcCCHHHH--HHHHHHhhHHH
Confidence            567 55  999998888 999999999999997    2568888888877 4799999999999966  888888888 6


Q ss_pred             ccccccc-cce-ecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024306           93 KDVDGFH-PLN-IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (269)
Q Consensus        93 kdvdg~~-~~n-~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  169 (269)
                      +.+.+++ .+| .|++. |+||      |..|+++.|++.+.+ .+++++|||+||+ |++++..|...|+ +|+|++|+
T Consensus        82 ~~iGAvNTi~~~~g~l~-g~NT------D~~G~~~~l~~~~~~-~~~~vlvlGaGga-arav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A           82 QAIESVNTIVNDNGFLR-AYNT------DYIAIVKLIEKYHLN-KNAKVIVHGSGGM-AKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             HTTTCCCEEEEETTEEE-EECH------HHHHHHHHHHHTTCC-TTSCEEEECSSTT-HHHHHHHHHHTTCCCEEEECSC
T ss_pred             HHhCCCCceECcCCEEE-eecC------CHHHHHHHHHHhCCC-CCCEEEEECCcHH-HHHHHHHHHHCCCCEEEEEeCC
Confidence            6665542 223 34554 6555      669999999987775 7899999999998 9999999999997 69999997


Q ss_pred             CCC---Hh---------h-hcCCCCEEEeccCCC---C-----c-ccCCCcCCCcEEEEeeecCCCCCCCCCCceeeccc
Q 024306          170 TKN---PE---------Q-ITSEADIVIAAAGVA---N-----L-VRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDV  227 (269)
Q Consensus       170 t~~---l~---------~-~~~~aDiVIsAtg~p---~-----~-i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDv  227 (269)
                      ...   +.         + .+.++|+|||+|+..   +     . ++.++++++.+|+|+.|+|.+|       +|+   
T Consensus       153 ~~ka~~la~~~~~~~~~~~~~~~~DivInaTp~gm~~~~~~~~~~~~~~~l~~~~~v~DlvY~P~~T-------~ll---  222 (271)
T 1npy_A          153 VKTGQYLAALYGYAYINSLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVET-------PFI---  222 (271)
T ss_dssp             HHHHHHHHHHHTCEEESCCTTCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSC-------HHH---
T ss_pred             HHHHHHHHHHcCCccchhhhcccCCEEEECCCCCccCccccCCCCCCHHHcCCCCEEEEeecCCCCC-------HHH---
Confidence            321   11         0 136799999999842   2     1 3445677899999999999887       677   


Q ss_pred             chHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          228 CYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       228 d~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                         ..+++.|+.  +.+|.+     ||++|++++|++|+|.
T Consensus       223 ---~~A~~~G~~--~i~Gl~-----MLv~Qa~~~f~lw~g~  253 (271)
T 1npy_A          223 ---RYAQARGKQ--TISGAA-----VIVLQAVEQFELYTHQ  253 (271)
T ss_dssp             ---HHHHHTTCE--EECHHH-----HHHHHHHHHHHHHHSC
T ss_pred             ---HHHHHCCCE--EECCHH-----HHHHHHHHHHHHHhCC
Confidence               447788884  467775     9999999999999996

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=99.97  E-value=3.6e-31  Score=235.86  Aligned_cols=212  Identities=14%  Similarity=0.125  Sum_probs=170.1

Q ss_pred             eCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-cc
Q 024306           16 VGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EK   93 (269)
Q Consensus        16 vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~k   93 (269)
                      +| +|.+||.++.+++ +|+++|+++.|..|+.  ++++|.+.++.++  +++.|+|||+|||+.+  .++++. +| .+
T Consensus         6 iG-~pi~hS~SP~~hn~~~~~~gl~~~Y~~~~v--~~~~l~~~~~~~~--~~~~G~nVT~P~K~~v--~~~~d~-~~~A~   77 (253)
T 3u62_A            6 IG-YPVRHSISPRLYNEYFKRAGMNHSYGMEEI--PPESFDTEIRRIL--EEYDGFNATIPHKERV--MRYVEP-SEDAQ   77 (253)
T ss_dssp             EE-SSCTTCSHHHHHHHHHHHHTCCCEEEEEEC--CGGGHHHHHHHHH--HHCSEEEECTTCTTGG--GGGSEE-CHHHH
T ss_pred             EC-CCccccccHHHHHHHHHHcCCCCEEEeEec--CHHHHHHHHHHHh--hCCCceeecCChHHHH--HHHhCC-CHHHH
Confidence            45 8999999999888 9999999999999965  5788999999998  5899999999999855  778888 88 44


Q ss_pred             cccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--
Q 024306           94 DVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--  170 (269)
Q Consensus        94 dvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--  170 (269)
                      .+.   ++|+-....|+||      |..|+++.|++.  +++| +++|||+|++ |++++..|.+.|+ +|++++|+.  
T Consensus        78 ~iG---AvNTi~~~~G~NT------D~~G~~~~l~~~--~~~~-~vliiGaGg~-a~ai~~~L~~~G~~~I~v~nR~~~k  144 (253)
T 3u62_A           78 RIK---AVNCVFRGKGYNT------DWVGVVKSLEGV--EVKE-PVVVVGAGGA-ARAVIYALLQMGVKDIWVVNRTIER  144 (253)
T ss_dssp             HHT---CCCEEETTEEECC------HHHHHHHHTTTC--CCCS-SEEEECCSHH-HHHHHHHHHHTTCCCEEEEESCHHH
T ss_pred             HcC---cceEeecCEEEcc------hHHHHHHHHHhc--CCCC-eEEEECcHHH-HHHHHHHHHHcCCCEEEEEeCCHHH
Confidence            443   5665321136555      669999999865  5789 9999999998 9999999999998 799999873  


Q ss_pred             -------------CCHhhhcCCCCEEEeccCC---CC--cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHH
Q 024306          171 -------------KNPEQITSEADIVIAAAGV---AN--LVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEA  232 (269)
Q Consensus       171 -------------~~l~~~~~~aDiVIsAtg~---p~--~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~  232 (269)
                                   .++.+.++++|+||++|+.   |+  .++.++++++.+|+|+.|+  +|       +++     +. 
T Consensus       145 a~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~i~~~~l~~~~~V~Divy~--~T-------~ll-----~~-  209 (253)
T 3u62_A          145 AKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELPVSDDSLKNLSLVYDVIYF--DT-------PLV-----VK-  209 (253)
T ss_dssp             HHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCSCCHHHHTTCSEEEECSSS--CC-------HHH-----HH-
T ss_pred             HHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCCCCHHHhCcCCEEEEeeCC--Cc-------HHH-----HH-
Confidence                         1234567889999999973   43  3666788999999999999  56       677     34 


Q ss_pred             hhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024306          233 MRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGFT  269 (269)
Q Consensus       233 ~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~~  269 (269)
                      ++..++.. +.+|.     .||+.|++.+|++|+|.+
T Consensus       210 A~~~G~~~-~~~Gl-----~MLv~Qa~~af~~wtg~~  240 (253)
T 3u62_A          210 ARKLGVKH-IIKGN-----LMFYYQAMENLKIWGIYD  240 (253)
T ss_dssp             HHHHTCSE-EECTH-----HHHHHHHHHHHHHTTCCC
T ss_pred             HHHCCCcE-EECCH-----HHHHHHHHHHHHHHhCCC
Confidence            56677630 34455     599999999999999974

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=99.89  E-value=5.6e-24  Score=206.99  Aligned_cols=218  Identities=18%  Similarity=0.222  Sum_probs=160.8

Q ss_pred             EeCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-c
Q 024306           15 LVGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-E   92 (269)
Q Consensus        15 ~vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~   92 (269)
                      .+| +|.+||.++.+++ +|+++|+++.|..|+.+    ++.+.++.+.. +++.|+|||+|+|+.+  .++++.+++ +
T Consensus       239 viG-~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~----~l~~~~~~~~~-~~~~G~nVTiP~K~~i--~~~ld~~~~~A  310 (523)
T 2o7s_A          239 IIG-KPVSHSKSPIVHNQAFKSVDFNGVYVHLLVD----NLVSFLQAYSS-SDFAGFSCTIPHKEAA--LQCCDEVDPLA  310 (523)
T ss_dssp             EEE-SSCTTCCHHHHHHHHHHHTTCSEEEEEEECS----CHHHHHHHTCS-TTEEEEEECTTCHHHH--HHHCSEECHHH
T ss_pred             EEC-CCccCCccHHHHHHHHHHcCCCcEEEeEEcc----hHHHHHHHHhc-CCCCEEEECCCCHHHH--HHHhcccCHHH
Confidence            346 8999999998887 99999999999999763    68888888876 6899999999999743  677788887 6


Q ss_pred             ccccccc-cce---ecccccCCCCCccccCCHHHHHHHHHHhC-------------CCCccceEEEEcCCcccHHHHHHH
Q 024306           93 KDVDGFH-PLN---IGNLAMRGREPLFIPCTPKGCIELLIRSG-------------VEIMGKNAVVIGRSNIVGLPTSLL  155 (269)
Q Consensus        93 kdvdg~~-~~n---~g~l~~g~~~~~~~p~t~~g~~~~l~~~~-------------~~l~gk~v~ViG~gg~vg~~~a~~  155 (269)
                      +.+.+++ .+|   .|++. |+||      |..|++..++...             .+++||+++|+|+||+ |++++..
T Consensus       311 ~~iGAvNti~~~~~~gk~~-g~nT------D~~G~~~~l~~~~~~~~~~~~~~~~~~~l~~k~vlV~GaGGi-g~aia~~  382 (523)
T 2o7s_A          311 KSIGAVNTILRRKSDGKLL-GYNT------DCIGSISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGA-GKALAYG  382 (523)
T ss_dssp             HHHTCCSEEEECTTTCCEE-EECC------HHHHHHHHHHHHC-------------------CEEEECCSHH-HHHHHHH
T ss_pred             HHhCCCeEEEEecCCCeEE-EEcC------CHHHHHHHHHHhhhhccccccccccccccCCCEEEEECCcHH-HHHHHHH
Confidence            6666652 233   24554 5544      6689999998641             3678999999999997 9999999


Q ss_pred             HHhCCCEEEEEeCCCCC-----------------Hhh-hcCCCCEEEeccCC---C----CcccCCCcCCCcEEEEeeec
Q 024306          156 LQRHHATVSIVHALTKN-----------------PEQ-ITSEADIVIAAAGV---A----NLVRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       156 L~~~ga~Vti~~~~t~~-----------------l~~-~~~~aDiVIsAtg~---p----~~i~~~~~~~g~vViDv~~~  210 (269)
                      |+++|++|++++|+...                 +.+ .....|++|+++|.   |    ..+....+.+...++|+.|+
T Consensus       383 L~~~G~~V~i~~R~~~~a~~la~~~~~~~~~~~dl~~~~~~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~  462 (523)
T 2o7s_A          383 AKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYT  462 (523)
T ss_dssp             HHHHCC-CEEEESSHHHHHHHHHHTTC-CEETTTTTTC--CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCS
T ss_pred             HHHCCCEEEEEECCHHHHHHHHHHcCCceeeHHHhhhccccCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeC
Confidence            99999999999987321                 111 12347999999984   2    12444556667899999999


Q ss_pred             CCCCCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          211 PVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       211 ~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                      |..|       +++     +. ++..|+.+  .+|.+     ||++|++.+|+.|+|.
T Consensus       463 p~~T-------~ll-----~~-a~~~G~~~--i~Gl~-----mlv~Qa~~~f~lwtg~  500 (523)
T 2o7s_A          463 PRIT-------RLL-----RE-AEESGAIT--VSGSE-----MFVRQAYEQFEIFTGL  500 (523)
T ss_dssp             SSSC-------HHH-----HH-HHTTTCEE--ECHHH-----HHHHHHHHHHHHHHSS
T ss_pred             CccC-------HHH-----HH-HHHCCCEE--ECcHH-----HHHHHHHHHHHHHhCC
Confidence            8876       566     33 45567744  66774     9999999999999985

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=99.78  E-value=7.2e-20  Score=174.10  Aligned_cols=200  Identities=17%  Similarity=0.237  Sum_probs=151.5

Q ss_pred             chHHHHHHHHH-H--HHHc-CCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEE---eCCCCCCCCHHHHHhcCCccc
Q 024306           21 DSQTYVRNKIK-A--CEEV-GIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILV---QLPLPQHLDEGKILDAVSLEK   93 (269)
Q Consensus        21 ~s~~y~~~~~~-~--~~~~-Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V---~~Pl~~~~~~~~i~~~i~p~k   93 (269)
                      +.|+.++.+++ +  |+++ ||++.|+.|+.+ +.++|.++++.+.  +++.|+||   ++|+|.     ++++.+++  
T Consensus        82 G~hS~sPvmh~ka~lf~~~gGid~~yi~ldv~-d~de~~~~v~~l~--~~f~GinvED~T~P~k~-----~il~~l~~--  151 (439)
T 2dvm_A           82 GPLAGLPVMEGKALLFKRFGGVDAFPIMIKEQ-EPNKFIDIVKAIA--PTFGGINLEDIASPKCF-----YILERLRE--  151 (439)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCEEEEEECSCC-SHHHHHHHHHHTG--GGCSEEEECSCCTTHHH-----HHHHHHHH--
T ss_pred             eccccCHHHHHHHHHHHHhCCCCCeeeeeecC-CHHHHHHHHHHhC--ccCcEEEEEeCCCchHH-----HHHHHHHH--
Confidence            34888887766 6  9999 899999999762 5899999999997  68999999   999994     55665543  


Q ss_pred             ccccc-ccce--ecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC---EEEEEe
Q 024306           94 DVDGF-HPLN--IGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVH  167 (269)
Q Consensus        94 dvdg~-~~~n--~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~  167 (269)
                         .+ ++++  .+++. |       +++..|++..|+..+.++++++|+|+|+|++ |++++.+|...|+   +|++++
T Consensus       152 ---avNt~vf~dD~~gt-g-------ntd~aG~~~AL~~~g~~l~~~rvlvlGAGgA-g~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          152 ---ELDIPVFHDDQQGT-A-------AVVLAGLLNALKVVGKKISEITLALFGAGAA-GFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             ---HCSSCEEEHHHHHH-H-------HHHHHHHHHHHHHHTCCTTTCCEEEECCSHH-HHHHHHHHHHTTCCGGGEEEEE
T ss_pred             ---hcCEEEEeCCCcEE-e-------ehHHHHHHHHHHHhCCCccCCEEEEECccHH-HHHHHHHHHHcCCCcCeEEEEE
Confidence               22 2332  22222 2       4466999999999999999999999999998 9999999999998   699999


Q ss_pred             ----CC----C-CC-----------------------HhhhcCCCCEEEeccCCC-CcccCCC---cCCCcEEEEeeecC
Q 024306          168 ----AL----T-KN-----------------------PEQITSEADIVIAAAGVA-NLVRGSW---LKPGAVVLDVGTCP  211 (269)
Q Consensus       168 ----~~----t-~~-----------------------l~~~~~~aDiVIsAtg~p-~~i~~~~---~~~g~vViDv~~~~  211 (269)
                          |+    . .+                       +.+.++++|++|++|+.| +.+++++   +.++.+|+|+ |||
T Consensus       220 ~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~aDVlInaT~~~~G~~~~e~v~~m~~~~iVfDL-ynP  298 (439)
T 2dvm_A          220 LVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDADVLISFTRPGPGVIKPQWIEKMNEDAIVFPL-ANP  298 (439)
T ss_dssp             EETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTTCSEEEECSCCCSSSSCHHHHTTSCTTCEEEEC-CSS
T ss_pred             ccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhccCCEEEEcCCCccCCCChHHHHhcCCCCEEEEC-CCC
Confidence                65    1 12                       334567899999999984 6665544   5678899999 999


Q ss_pred             CCCCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHHHHHHH
Q 024306          212 VDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA  262 (269)
Q Consensus       212 ~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~  262 (269)
                      .+|       .+.     +. +++.|+.+ +..|.+     ||..|+..++
T Consensus       299 ~~t-------~~~-----~~-A~~~G~~i-vatG~~-----ml~~Q~nn~~  330 (439)
T 2dvm_A          299 VPE-------ILP-----EE-AKKAGARI-VATGRS-----DYPNQINNLL  330 (439)
T ss_dssp             SCS-------SCH-----HH-HHHHTCSE-ECBSCS-----SSSSBCCGGG
T ss_pred             CCc-------chH-----HH-HHHcCCeE-EcCCCc-----hhHHHHHHHh
Confidence            876       455     34 55667633 336775     8888765443

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.71  E-value=5.1e-19  Score=159.16  Aligned_cols=221  Identities=15%  Similarity=0.072  Sum_probs=159.7

Q ss_pred             CcchHHHHHHHHH-HHH-----HcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCcc
Q 024306           19 RRDSQTYVRNKIK-ACE-----EVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLE   92 (269)
Q Consensus        19 ~~~s~~y~~~~~~-~~~-----~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~   92 (269)
                      .|-+||.++.+++ .|+     +.|+++.|..++.  ++++|.+.++.+.-..+..|+|++.|++...+...+.+.++..
T Consensus         2 ~~i~hs~sp~~h~~~~~~~~~~~~g~~~~y~~~~v--~~~~~~~~~~~~~~~~~~~g~~~t~~~~~G~~~~~~~~~~~~~   79 (287)
T 1lu9_A            2 KKLLFQFDTDATPSVFDVVVGYDGGADHITGYGNV--TPDNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEAV   79 (287)
T ss_dssp             CCEEEEEESSSSCCHHHHHHHHHTTCSEEEEESSC--CTTTHHHHHHHHHSSCCGGGGGGEEEEEECSCHHHHHHHHHHH
T ss_pred             CceEEEccCCCCCCchhhheeeccCcceEeccCCc--CHHHHHhhhcceEEecCccccccceEEEccchHHHHHHHHHHH
Confidence            3456666777666 777     5999999999955  6789999999974445789999999998766766555555443


Q ss_pred             ccccccccceecccccCCCCCccccCCHHHHHHHHHHh-CCCCccceEEEEc-CCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306           93 KDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRS-GVEIMGKNAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus        93 kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~-~~~l~gk~v~ViG-~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      + ..-+.++|+..+..   .. -.++|+.|+++.|++. +.+++||+++|+| +||+ |++++..|+++|++|++++|+.
T Consensus        80 ~-~~~~gavnt~~~~~---~~-G~nTd~~g~~~~l~~~~~~~l~gk~vlVtGaaGGi-G~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A           80 K-KRFFGPFRVSCMLD---SN-GSNTTAAAGVALVVKAAGGSVKGKKAVVLAGTGPV-GMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             H-HHCBTTBCCEEEEC---ST-THHHHHHHHHHHHHHHTTSCCTTCEEEEETCSSHH-HHHHHHHHHHTTCEEEEEESSH
T ss_pred             H-HhcCCCeEEEEecC---CC-cCCchHHHHHHHHHHhhccCCCCCEEEEECCCcHH-HHHHHHHHHHCcCEEEEEECCH
Confidence            3 22235677543321   11 2366889999999988 8889999999999 6775 9999999999999999998862


Q ss_pred             C--------------------------CHhhhcCCCCEEEeccCCC---Ccc-cCCCcCCCcEEEEeeecCCC----CCC
Q 024306          171 K--------------------------NPEQITSEADIVIAAAGVA---NLV-RGSWLKPGAVVLDVGTCPVD----DPS  216 (269)
Q Consensus       171 ~--------------------------~l~~~~~~aDiVIsAtg~p---~~i-~~~~~~~g~vViDv~~~~~~----~~~  216 (269)
                      .                          ++.+.++++|+||+++|..   ..+ +.+.+++...++|+.|.+..    |  
T Consensus       154 ~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~~~i~~t--  231 (287)
T 1lu9_A          154 DKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGI--  231 (287)
T ss_dssp             HHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECCCTTCCSBCHHHHTTCTTCCEEEECCCSSSCSBTTS--
T ss_pred             HHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEECCCccccCCChhHcCchHHHHHHHHhhhhhhHHhhcc--
Confidence            1                          1234567789999999742   122 33345777899999998876    5  


Q ss_pred             CCCCceeecccchHHHh------hHcceecccCCcccHHHHHHHHHHHHHHHHHHhCC
Q 024306          217 CEYGYRLMGDVCYEEAM------RLASVITPVPGGVGPMTVAMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       217 ~~~~~~l~GDvd~~~~~------~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~~~  268 (269)
                           +++     +. +      +..++.  +.+|++     ||++|++.+ ++|++.
T Consensus       232 -----~ll-----~~-a~~~~~~~~~G~~--~v~gl~-----ml~~qa~~a-~~~~~~  270 (287)
T 1lu9_A          232 -----DAT-----DK-GKEYGGKRAFGAL--GIGGLK-----LKLHRACIA-KLFESS  270 (287)
T ss_dssp             -----CTT-----CE-EEEETTEEEECHH--HHHHHH-----HHHHHHHHH-HHTSCS
T ss_pred             -----hHH-----hh-ccccCCCccccce--eECchH-----HHHHHHHHH-HHhhCC
Confidence                 344     12 3      445553  456664     999999988 888874

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.16  E-value=1.8e-10  Score=103.92  Aligned_cols=120  Identities=20%  Similarity=0.319  Sum_probs=93.1

Q ss_pred             HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------CCHhhhcCCCCEEEeccCCCC
Q 024306          128 IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------KNPEQITSEADIVIAAAGVAN  191 (269)
Q Consensus       128 ~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------~~l~~~~~~aDiVIsAtg~p~  191 (269)
                      +..+.++.|+++.|||.|++ |+++++.|...|++|++++++.                .++.+.+++||+||++++. +
T Consensus       149 ~~~~~~l~g~~v~IiG~G~i-G~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-~  226 (300)
T 2rir_A          149 QHTDYTIHGSQVAVLGLGRT-GMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-M  226 (300)
T ss_dssp             HTCSSCSTTSEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-C
T ss_pred             HhcCCCCCCCEEEEEcccHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-h
Confidence            33567899999999999986 9999999999999999998763                2355678899999999996 4


Q ss_pred             cccC---CCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHccee---cc-cCCcccHHHHHHHHHHHHHHHH
Q 024306          192 LVRG---SWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVI---TP-VPGGVGPMTVAMLLSNTLDSAK  263 (269)
Q Consensus       192 ~i~~---~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~---tp-vpgGvGp~T~~mLl~n~v~a~~  263 (269)
                      .++.   +.+++++++||+++.+.             +++++. ++..+..   .| +||+++|.+...|+.+.+..+-
T Consensus       227 ~i~~~~~~~mk~g~~lin~a~g~~-------------~~~~~~-a~~~G~~~i~~pg~~g~v~~a~a~~l~~~~~~~~l  291 (300)
T 2rir_A          227 ILNQTVLSSMTPKTLILDLASRPG-------------GTDFKY-AEKQGIKALLAPGLPGIVAPKTAGQILANVLSKLL  291 (300)
T ss_dssp             CBCHHHHTTSCTTCEEEECSSTTC-------------SBCHHH-HHHHTCEEEECCCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             hhCHHHHHhCCCCCEEEEEeCCCC-------------CcCHHH-HHHCCCEEEECCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            5544   34689999999998753             233323 3444443   25 7899999999999999887664

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=99.09  E-value=2.3e-10  Score=91.95  Aligned_cols=92  Identities=16%  Similarity=0.336  Sum_probs=76.0

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------------CCHhhhcCCCC
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------KNPEQITSEAD  181 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------------~~l~~~~~~aD  181 (269)
                      .+...++.++...    +++++|||+|++ |+.++..|...|++|++++++.                 .++.+.++++|
T Consensus         8 v~~~a~~~~~~~~----~~~v~iiG~G~i-G~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~D   82 (144)
T 3oj0_A            8 IPSIVYDIVRKNG----GNKILLVGNGML-ASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNND   82 (144)
T ss_dssp             HHHHHHHHHHHHC----CCEEEEECCSHH-HHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCS
T ss_pred             HHHHHHHHHHhcc----CCEEEEECCCHH-HHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCC
Confidence            4566777777653    899999999886 9999999999999999998762                 34567778999


Q ss_pred             EEEeccCCCCc-ccCCCcCCCcEEEEeeecCCCCC
Q 024306          182 IVIAAAGVANL-VRGSWLKPGAVVLDVGTCPVDDP  215 (269)
Q Consensus       182 iVIsAtg~p~~-i~~~~~~~g~vViDv~~~~~~~~  215 (269)
                      +||++||.++. ++.++++++.+++|++.++..+|
T Consensus        83 ivi~at~~~~~~~~~~~l~~g~~vid~~~p~~~~~  117 (144)
T 3oj0_A           83 VIITATSSKTPIVEERSLMPGKLFIDLGNPPNIER  117 (144)
T ss_dssp             EEEECSCCSSCSBCGGGCCTTCEEEECCSSCSBCC
T ss_pred             EEEEeCCCCCcEeeHHHcCCCCEEEEccCCccCCC
Confidence            99999998765 67899999999999998765443

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.00  E-value=1.7e-09  Score=97.31  Aligned_cols=128  Identities=20%  Similarity=0.294  Sum_probs=95.4

Q ss_pred             CHHHHHHH-HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------CCHhhhcCCCC
Q 024306          119 TPKGCIEL-LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------KNPEQITSEAD  181 (269)
Q Consensus       119 t~~g~~~~-l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------~~l~~~~~~aD  181 (269)
                      +++.++.+ |...+.++.|+++.|||.|++ |+.+++.|...|++|++++++.                .++.+.++++|
T Consensus       137 vae~a~~~~l~~~~~~l~g~~v~IiG~G~i-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aD  215 (293)
T 3d4o_A          137 TAEGTIMMAIQHTDFTIHGANVAVLGLGRV-GMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVD  215 (293)
T ss_dssp             HHHHHHHHHHHHCSSCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCS
T ss_pred             HHHHHHHHHHHhcCCCCCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCC
Confidence            45555554 445678899999999999987 9999999999999999998763                13456688999


Q ss_pred             EEEeccCCCCcccCC---CcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHccee----cccCCcccHHHHHHH
Q 024306          182 IVIAAAGVANLVRGS---WLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVI----TPVPGGVGPMTVAML  254 (269)
Q Consensus       182 iVIsAtg~p~~i~~~---~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~----tpvpgGvGp~T~~mL  254 (269)
                      +||.+++. +.+..+   .++++.++||+++.|.             ++|++. ++..+..    .-.|+.++|.|...+
T Consensus       216 vVi~~~p~-~~i~~~~l~~mk~~~~lin~ar~~~-------------~~~~~~-a~~~Gv~~~~~~~l~~~v~p~~a~~~  280 (293)
T 3d4o_A          216 VCINTIPA-LVVTANVLAEMPSHTFVIDLASKPG-------------GTDFRY-AEKRGIKALLVPGLPGIVAPKTAGRI  280 (293)
T ss_dssp             EEEECCSS-CCBCHHHHHHSCTTCEEEECSSTTC-------------SBCHHH-HHHHTCEEEECCCHHHHHCHHHHHHH
T ss_pred             EEEECCCh-HHhCHHHHHhcCCCCEEEEecCCCC-------------CCCHHH-HHHCCCEEEECCCCCcccCHHHHHHH
Confidence            99999975 455443   4689999999998653             334433 3444432    335677889999999


Q ss_pred             HHHHHHHH
Q 024306          255 LSNTLDSA  262 (269)
Q Consensus       255 l~n~v~a~  262 (269)
                      +.+.+..+
T Consensus       281 ~~~~~~~~  288 (293)
T 3d4o_A          281 LADVLVKL  288 (293)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888665

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.96  E-value=3.9e-09  Score=98.49  Aligned_cols=166  Identities=20%  Similarity=0.296  Sum_probs=118.2

Q ss_pred             HHHHHHHHHH-cCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHH---HHhcCCccccccccccc
Q 024306           26 VRNKIKACEE-VGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK---ILDAVSLEKDVDGFHPL  101 (269)
Q Consensus        26 ~~~~~~~~~~-~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~---i~~~i~p~kdvdg~~~~  101 (269)
                      ...|...|+. -||++.-+++... +.+|+.+.++.+-  |.+.+|++     +.+...+   +++.+...-++-.+|.-
T Consensus        96 ~egK~~Lf~~~agid~~pi~ldv~-~~dE~v~~vk~~~--p~f~~i~l-----ED~~~p~af~il~r~r~~~~Ipvf~DD  167 (388)
T 1vl6_A           96 MEGKAFLFKAFADIDAFPICLSES-EEEKIISIVKSLE--PSFGGINL-----EDIGAPKCFRILQRLSEEMNIPVFHDD  167 (388)
T ss_dssp             HHHHHHHHHHHHCCEEEEEECSCC-CHHHHHHHHHHTG--GGCSEEEE-----CSCCTTHHHHHHHHHHHHCSSCEEEHH
T ss_pred             hhCHHHHHHhccCCceEeEEeCCC-CHHHHHHHHHHcC--CcceEeCH-----hhcCCHHHHHHHHHhhhhcCcceeccc
Confidence            3456666664 5799998988776 5889999998876  56888876     3332223   22222222122222211


Q ss_pred             eecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC----C------
Q 024306          102 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL----T------  170 (269)
Q Consensus       102 n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~----t------  170 (269)
                      -.|..          -.+..|++..++-.+.++++.+|+|+|+|.+ |..++++|...|+ +|++|+|+    .      
T Consensus       168 iqGTa----------sV~lAal~~A~~i~g~~l~~~kVVv~GAGaA-G~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~  236 (388)
T 1vl6_A          168 QQGTA----------VVVSAAFLNALKLTEKKIEEVKVVVNGIGAA-GYNIVKFLLDLGVKNVVAVDRKGILNENDPETC  236 (388)
T ss_dssp             HHHHH----------HHHHHHHHHHHHHHTCCTTTCEEEEECCSHH-HHHHHHHHHHHTCCEEEEEETTEECCTTSGGGC
T ss_pred             cccHH----------HHHHHHHHHHHHHhCCCCCCcEEEEECCCHH-HHHHHHHHHhCCCCeEEEEECCCcccCCCcccc
Confidence            12211          1133566667777788999999999999997 9999999999998 79999886    1      


Q ss_pred             ------------------CCHhhhcCCCCEEEeccCCCCcccCCCcC---CCcEEEEeeecCC
Q 024306          171 ------------------KNPEQITSEADIVIAAAGVANLVRGSWLK---PGAVVLDVGTCPV  212 (269)
Q Consensus       171 ------------------~~l~~~~~~aDiVIsAtg~p~~i~~~~~~---~g~vViDv~~~~~  212 (269)
                                        .+|.+.+++||++|.+++ |+.++++|++   ++.+|+|++ ||.
T Consensus       237 L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~Sa-p~l~t~emVk~Ma~~pIIfalS-NPt  297 (388)
T 1vl6_A          237 LNEYHLEIARITNPERLSGDLETALEGADFFIGVSR-GNILKPEWIKKMSRKPVIFALA-NPV  297 (388)
T ss_dssp             SSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSC-SSCSCHHHHTTSCSSCEEEECC-SSS
T ss_pred             cCHHHHHHHHhhhccCchhhHHHHHccCCEEEEeCC-CCccCHHHHHhcCCCCEEEEcC-CCC
Confidence                              247889999999999988 8889999875   467999999 553

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.95  E-value=2.8e-10  Score=105.46  Aligned_cols=156  Identities=19%  Similarity=0.179  Sum_probs=104.5

Q ss_pred             HHHHcCC-eEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEE-eCCCCCCCCHHHHHhcCCccccccc--cccceecccc
Q 024306           32 ACEEVGI-KSIVTEFADGCTEDEVLNALSNYNQDSSINGILV-QLPLPQHLDEGKILDAVSLEKDVDG--FHPLNIGNLA  107 (269)
Q Consensus        32 ~~~~~Gi-~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V-~~Pl~~~~~~~~i~~~i~p~kdvdg--~~~~n~g~l~  107 (269)
                      .+.+.|. .+.|..+..+  + ++.+.+.+.    ++.|+++ ++|+|.+.  ..+++.+++..-.-+  +..+|+.+..
T Consensus        82 ~~~~~g~~~~~y~~~~~~--~-~l~~~l~~~----gi~~~~~etvp~k~~~--~~~l~~~s~~Ag~~a~~~gA~nt~~~~  152 (361)
T 1pjc_A           82 DLMQKDQLLFTYLHLAAA--R-ELTEQLMRV----GLTAIAYETVELPNRS--LPLLTPMSIIAGRLSVQFGARFLERQQ  152 (361)
T ss_dssp             GGCCTTCEEEECCCGGGC--H-HHHHHHHHH----TCEEEEGGGCCCTTSC--CTTTHHHHHHHHHHHHHHHHHHTSGGG
T ss_pred             HhhcCCCEEEEEeccccC--H-HHHHHHHHc----CCeEEEEeeeEcccCC--ccccCcchHHHHHHHHHHHHHHHhhcc
Confidence            5567885 8888888763  3 565555544    6889998 99998643  445555554222110  1356655544


Q ss_pred             cCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------------
Q 024306          108 MRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------  171 (269)
Q Consensus       108 ~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------  171 (269)
                      .|  + +|.          +... ..+++++|+|+|+|++ |+.+++.|...|++|++++++..                
T Consensus       153 ~g--~-G~~----------l~~l-~~l~~~~VlViGaGgv-G~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~  217 (361)
T 1pjc_A          153 GG--R-GVL----------LGGV-PGVKPGKVVILGGGVV-GTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELL  217 (361)
T ss_dssp             TS--C-CCC----------TTCB-TTBCCCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEE
T ss_pred             CC--C-cee----------ccCC-CCCCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEee
Confidence            22  1 231          0000 2367899999999886 99999999999999999987621                


Q ss_pred             -----CHhhhcCCCCEEEeccCCCC-----ccc---CCCcCCCcEEEEeeecC
Q 024306          172 -----NPEQITSEADIVIAAAGVAN-----LVR---GSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       172 -----~l~~~~~~aDiVIsAtg~p~-----~i~---~~~~~~g~vViDv~~~~  211 (269)
                           ++.+.++.+|+||+++|.|.     ++.   .+.++++.+++|+++++
T Consensus       218 ~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~~  270 (361)
T 1pjc_A          218 YSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQ  270 (361)
T ss_dssp             ECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTT
T ss_pred             eCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEecCC
Confidence                 12345568999999998643     233   24578999999999976

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.79  E-value=4.4e-09  Score=98.84  Aligned_cols=139  Identities=12%  Similarity=0.118  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC-----------------CHhhhcCCCC
Q 024306          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK-----------------NPEQITSEAD  181 (269)
Q Consensus       120 ~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~-----------------~l~~~~~~aD  181 (269)
                      +...++..+....++.|++|+|+|+|++ |+.+++.|...|+ +|++++|+..                 ++.+.+.++|
T Consensus       151 a~~av~~a~~~~~~l~g~~VlIiGaG~i-G~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aD  229 (404)
T 1gpj_A          151 GSAAVELAERELGSLHDKTVLVVGAGEM-GKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSD  229 (404)
T ss_dssp             HHHHHHHHHHHHSCCTTCEEEEESCCHH-HHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCS
T ss_pred             HHHHHHHHHHHhccccCCEEEEEChHHH-HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCC
Confidence            3444454442223579999999999887 9999999999998 8999988631                 2345567899


Q ss_pred             EEEeccCCCCc-ccCCC-----c----CCCcEEEEeeecCCCCCCC--CCCceeecccch-HHHhh---HcceecccCCc
Q 024306          182 IVIAAAGVANL-VRGSW-----L----KPGAVVLDVGTCPVDDPSC--EYGYRLMGDVCY-EEAMR---LASVITPVPGG  245 (269)
Q Consensus       182 iVIsAtg~p~~-i~~~~-----~----~~g~vViDv~~~~~~~~~~--~~~~~l~GDvd~-~~~~~---~~~~~tpvpgG  245 (269)
                      +||++||.+.. ++.+.     +    .++.+++|+++++..++.-  ..+..++ |+|. ..+.+   ..+.  ....|
T Consensus       230 vVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~P~~i~~~l~~l~~v~l~-d~d~l~~~~~~~~~~r~--~~~~~  306 (404)
T 1gpj_A          230 VVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPRDVEEGVENIEDVEVR-TIDDLRVIARENLERRR--KEIPK  306 (404)
T ss_dssp             EEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCSBCTTGGGSTTEEEE-EHHHHHHHHHHHHHHHH--TTHHH
T ss_pred             EEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccCCCCCCccccccCCeEEE-eHhhHHHHHHHHHHHHH--HHHHH
Confidence            99999997665 43332     2    2468999999865434210  0011111 1221 11111   1122  12233


Q ss_pred             ccHHHHHHHHHHHHHHHHHHhC
Q 024306          246 VGPMTVAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       246 vGp~T~~mLl~n~v~a~~~~~~  267 (269)
                      .     .||+.|.+.+|+.|++
T Consensus       307 ~-----~~li~q~~~~f~~w~~  323 (404)
T 1gpj_A          307 V-----EKLIEEELSTVEEELE  323 (404)
T ss_dssp             H-----HHHHHHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHHHHHHHHH
Confidence            3     5999999999999985

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=98.77  E-value=2.5e-08  Score=93.25  Aligned_cols=166  Identities=16%  Similarity=0.270  Sum_probs=119.4

Q ss_pred             HHHHHHHHHH-cCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCcccc---ccccccc
Q 024306           26 VRNKIKACEE-VGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKD---VDGFHPL  101 (269)
Q Consensus        26 ~~~~~~~~~~-~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kd---vdg~~~~  101 (269)
                      ...|...|+. -||++.-+++... +.+|+.+.++.+-  |.+.||++     +.+...+.++.+.-.++   +-.+|.-
T Consensus        92 ~eGK~~Lf~~~agid~~pi~Ldv~-~~dEfv~~v~~~~--p~F~~I~l-----ED~~~p~~f~il~~~r~~~~ipvf~DD  163 (398)
T 2a9f_A           92 MEGKAALFKAFAGVDAIPIVLDTK-DTEEIISIVKALA--PTFGGINL-----EDISAPRCFEIEQRLIKECHIPVFHDD  163 (398)
T ss_dssp             HHHHHHHHHHHSSCEEEEEECCCC-CHHHHHHHHHHHG--GGCSEEEE-----CSCCTTHHHHHHHHHHHHCSSCEEEHH
T ss_pred             hhCHHHHHHhccCCceeeeEeCCC-CHHHHHHHHHHcC--CceeEecc-----ccCCChHHHHHHHHhhhcCCcceecch
Confidence            3457776665 5699998999776 5889999998876  67899888     33333333333322222   2222211


Q ss_pred             eecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC--------C--
Q 024306          102 NIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL--------T--  170 (269)
Q Consensus       102 n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~--------t--  170 (269)
                      -.|..          -.+..|.+..++-.+..++..+|+|+|+|-+ |..++++|...|+ +|++|+++        .  
T Consensus       164 iqGTa----------~V~lAall~al~l~g~~l~d~kVVi~GAGaA-G~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L  232 (398)
T 2a9f_A          164 QHGTA----------IVVLAAIFNSLKLLKKSLDEVSIVVNGGGSA-GLSITRKLLAAGATKVTVVDKFGIINEQEAAQL  232 (398)
T ss_dssp             HHHHH----------HHHHHHHHHHHHTTTCCTTSCEEEEECCSHH-HHHHHHHHHHHTCCEEEEEETTEECCTTCCCSC
T ss_pred             hhhHH----------HHHHHHHHHHHHHhCCCCCccEEEEECCCHH-HHHHHHHHHHcCCCeEEEEECCCcccCCccccc
Confidence            12211          1134567777787888999999999999887 9999999999999 89999764        1  


Q ss_pred             -----------------CCHhhhcCCCCEEEeccCCCCcccCCCc---CCCcEEEEeeecCC
Q 024306          171 -----------------KNPEQITSEADIVIAAAGVANLVRGSWL---KPGAVVLDVGTCPV  212 (269)
Q Consensus       171 -----------------~~l~~~~~~aDiVIsAtg~p~~i~~~~~---~~g~vViDv~~~~~  212 (269)
                                       .+|.+.++.||++|.+.+ |+.+++||+   +++.+|++++ ||.
T Consensus       233 ~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~Sa-pgl~T~EmVk~Ma~~pIIfals-NPt  292 (398)
T 2a9f_A          233 APHHLDIAKVTNREFKSGTLEDALEGADIFIGVSA-PGVLKAEWISKMAARPVIFAMA-NPI  292 (398)
T ss_dssp             CC---CHHHHHSCTTCCCSCSHHHHTTCSEEECCS-TTCCCHHHHHTSCSSCEEEECC-SSS
T ss_pred             hHHHHHHhhccCcccchhhHHHHhccCCEEEecCC-CCCCCHHHHHhhCCCCEEEECC-CCC
Confidence                             136788899999998866 899999987   4699999999 664

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.73  E-value=3e-08  Score=93.90  Aligned_cols=92  Identities=22%  Similarity=0.325  Sum_probs=75.7

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEE
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIV  183 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiV  183 (269)
                      .|+...+-.+++..+..+.||+|+|+|.|.+ |+++|+.|...|++|+++++..             .++.+.+++||+|
T Consensus       192 Gt~~slldgi~ratg~~L~GktVgIiG~G~I-G~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVV  270 (436)
T 3h9u_A          192 GCRESLVDGIKRATDVMIAGKTACVCGYGDV-GKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIF  270 (436)
T ss_dssp             HHHHHHHHHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEE
T ss_pred             cchHHHHHHHHHhcCCcccCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEE
Confidence            3433333333445788999999999999986 9999999999999999998752             3678899999999


Q ss_pred             EeccCCCCcccCCCc---CCCcEEEEeee
Q 024306          184 IAAAGVANLVRGSWL---KPGAVVLDVGT  209 (269)
Q Consensus       184 IsAtg~p~~i~~~~~---~~g~vViDv~~  209 (269)
                      |.+++..++++.+++   ++|++||+++.
T Consensus       271 ilt~gt~~iI~~e~l~~MK~gAIVINvgR  299 (436)
T 3h9u_A          271 VTTTGNDDIITSEHFPRMRDDAIVCNIGH  299 (436)
T ss_dssp             EECSSCSCSBCTTTGGGCCTTEEEEECSS
T ss_pred             EECCCCcCccCHHHHhhcCCCcEEEEeCC
Confidence            999988888887765   88999999994

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.64  E-value=6.2e-08  Score=92.00  Aligned_cols=90  Identities=22%  Similarity=0.304  Sum_probs=74.9

Q ss_pred             HHHHHHH-HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEec
Q 024306          121 KGCIELL-IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAA  186 (269)
Q Consensus       121 ~g~~~~l-~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIsA  186 (269)
                      +.++..+ +..+..+.||+++|+|.|.+ |+.+|+.|...|++|+++++..             .++.+.+++||+||++
T Consensus       231 eslvdgI~Ratg~~L~GKTVgVIG~G~I-Gr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv~LeElL~~ADIVv~a  309 (464)
T 3n58_A          231 ESLVDGIRRGTDVMMAGKVAVVCGYGDV-GKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVTT  309 (464)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECCHHHHGGGCSEEEEC
T ss_pred             HHHHHHHHHhcCCcccCCEEEEECcCHH-HHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceeccHHHHHhhCCEEEEC
Confidence            3444433 35788999999999999986 9999999999999999997641             3577889999999999


Q ss_pred             cCCCCcccCCCc---CCCcEEEEeeecC
Q 024306          187 AGVANLVRGSWL---KPGAVVLDVGTCP  211 (269)
Q Consensus       187 tg~p~~i~~~~~---~~g~vViDv~~~~  211 (269)
                      +|.+++++.+.|   |+|+++|+++...
T Consensus       310 tgt~~lI~~e~l~~MK~GAILINvGRgd  337 (464)
T 3n58_A          310 TGNKDVITIDHMRKMKDMCIVGNIGHFD  337 (464)
T ss_dssp             CSSSSSBCHHHHHHSCTTEEEEECSSST
T ss_pred             CCCccccCHHHHhcCCCCeEEEEcCCCC
Confidence            998889887765   8999999999654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.64  E-value=8.1e-08  Score=90.85  Aligned_cols=92  Identities=21%  Similarity=0.300  Sum_probs=76.0

Q ss_pred             HHHHHHHHH-HhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEe
Q 024306          120 PKGCIELLI-RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIA  185 (269)
Q Consensus       120 ~~g~~~~l~-~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIs  185 (269)
                      ...++..+. ..+..+.||+|+|+|.|.+ |+.+++.|...|++|+++++..             .++.+.+++||+||+
T Consensus       203 ~~s~~~gi~rat~~~L~GktV~ViG~G~I-Gk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi~  281 (435)
T 3gvp_A          203 RESILDGLKRTTDMMFGGKQVVVCGYGEV-GKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVIT  281 (435)
T ss_dssp             HHHHHHHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEE
T ss_pred             HHHHHHHHHHhhCceecCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEEE
Confidence            344444443 4578899999999999986 9999999999999999998642             357788999999999


Q ss_pred             ccCCCCcccCCC---cCCCcEEEEeeecCC
Q 024306          186 AAGVANLVRGSW---LKPGAVVLDVGTCPV  212 (269)
Q Consensus       186 Atg~p~~i~~~~---~~~g~vViDv~~~~~  212 (269)
                      ++|.+++++.+.   +++|++|++++....
T Consensus       282 atgt~~lI~~e~l~~MK~gailINvgrg~~  311 (435)
T 3gvp_A          282 CTGNKNVVTREHLDRMKNSCIVCNMGHSNT  311 (435)
T ss_dssp             CSSCSCSBCHHHHHHSCTTEEEEECSSTTT
T ss_pred             CCCCcccCCHHHHHhcCCCcEEEEecCCCc
Confidence            999888898775   489999999997654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.64  E-value=6.1e-08  Score=90.51  Aligned_cols=122  Identities=22%  Similarity=0.264  Sum_probs=83.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------------------------CHh
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------------------------NPE  174 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------------------------~l~  174 (269)
                      +.+++|+|+|+|.+ |..+++.|...|++|++++++..                                       ++.
T Consensus       182 v~~~kV~ViG~G~i-G~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          182 VKPASALVLGVGVA-GLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             ECCCEEEEESCSHH-HHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             cCCCEEEEECchHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            58999999999886 99999999999999999977631                                       244


Q ss_pred             hhcCCCCEEEeccCC-----CCcccCCCc---CCCcEEEEeeecCCCCCCCCCCceeecccchHHHhh-HcceecccCCc
Q 024306          175 QITSEADIVIAAAGV-----ANLVRGSWL---KPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMR-LASVITPVPGG  245 (269)
Q Consensus       175 ~~~~~aDiVIsAtg~-----p~~i~~~~~---~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~-~~~~~tpvpgG  245 (269)
                      +.+++||+||+++..     |++++++++   ++|++|||++..+-  .+.++. + -+.+ +.. .. ..-+++=.||-
T Consensus       261 e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~G--G~~e~t-~-~~~~-~~~-~gV~~~~v~nlP~~  334 (381)
T 3p2y_A          261 DAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETG--GNCELT-E-PGRT-IVH-HGVTITSPLNLPAT  334 (381)
T ss_dssp             HHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGT--CSBTTC-C-TTCE-EEE-TTEEEECCSCTGGG
T ss_pred             HHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCC--Cccccc-c-CCCe-EEE-CCEEEEeeCCCchh
Confidence            678999999998743     456888875   78999999998752  111000 0 0000 000 01 11123345777


Q ss_pred             ccHHHHHHHHHHHHHHHH
Q 024306          246 VGPMTVAMLLSNTLDSAK  263 (269)
Q Consensus       246 vGp~T~~mLl~n~v~a~~  263 (269)
                      + |.|...++.|.+..+-
T Consensus       335 v-p~tAS~~~s~~l~~~l  351 (381)
T 3p2y_A          335 M-PEHASELYAKNVTALL  351 (381)
T ss_dssp             S-HHHHHHHHHHHHHHHH
T ss_pred             h-HHHHHHHHHHHHHHHH
Confidence            7 8988888887776554

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=98.45  E-value=3.7e-07  Score=87.88  Aligned_cols=83  Identities=27%  Similarity=0.332  Sum_probs=71.6

Q ss_pred             HhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEeccCCCCcccC
Q 024306          129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLVRG  195 (269)
Q Consensus       129 ~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIsAtg~p~~i~~  195 (269)
                      ..+..+.||+|.|||.|.+ |+.+|+.|...|++|+++++..             .++.+.+++||+||++++.+++++.
T Consensus       270 ~~g~~L~GktVgIIG~G~I-G~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~~t~~lI~~  348 (494)
T 3d64_A          270 ATDVMIAGKIAVVAGYGDV-GKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTATGNYHVINH  348 (494)
T ss_dssp             HHCCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECSSSSCSBCH
T ss_pred             ccccccCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECCCcccccCH
Confidence            3577899999999999886 9999999999999999998763             2567889999999999988888877


Q ss_pred             CC---cCCCcEEEEeeecCC
Q 024306          196 SW---LKPGAVVLDVGTCPV  212 (269)
Q Consensus       196 ~~---~~~g~vViDv~~~~~  212 (269)
                      +.   +|+|++++|++....
T Consensus       349 ~~l~~MK~gAilINvgrg~v  368 (494)
T 3d64_A          349 DHMKAMRHNAIVCNIGHFDS  368 (494)
T ss_dssp             HHHHHCCTTEEEEECSSSSC
T ss_pred             HHHhhCCCCcEEEEcCCCcc
Confidence            65   589999999997655

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.42  E-value=3.5e-07  Score=86.03  Aligned_cols=123  Identities=24%  Similarity=0.247  Sum_probs=81.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------------------------
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------------------  171 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------------------------  171 (269)
                      .+.+.+|+|+|+|.+ |..+++.|...|++|++++++..                                         
T Consensus       187 ~v~~~kV~ViG~G~i-G~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~  265 (405)
T 4dio_A          187 TVPAAKIFVMGAGVA-GLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQ  265 (405)
T ss_dssp             EECCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHH
T ss_pred             CcCCCEEEEECCcHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhh
Confidence            357899999999876 99999999999999999976531                                         


Q ss_pred             --CHhhhcCCCCEEEeccC-----CCCcccCCCc---CCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhH-cceec
Q 024306          172 --NPEQITSEADIVIAAAG-----VANLVRGSWL---KPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRL-ASVIT  240 (269)
Q Consensus       172 --~l~~~~~~aDiVIsAtg-----~p~~i~~~~~---~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~-~~~~t  240 (269)
                        ++.+.+++|||||+++.     .|.+++++++   ++|++|||++..+-  .+.++. + .++. +.. ... .-+++
T Consensus       266 ~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~G--G~~e~t-~-~~~~-~~~-~GV~~~gv~  339 (405)
T 4dio_A          266 AALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERG--GNIEGA-E-AGKV-TEV-GGVRIVGHL  339 (405)
T ss_dssp             HHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGT--CSBTTC-C-TTEE-EEE-TTEEEEECS
T ss_pred             HhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCC--CCcccc-C-CCCe-EEE-CCEEEEEeC
Confidence              23456789999999864     3556888875   78999999998652  010000 0 0000 000 111 11223


Q ss_pred             ccCCcccHHHHHHHHHHHHHHHH
Q 024306          241 PVPGGVGPMTVAMLLSNTLDSAK  263 (269)
Q Consensus       241 pvpgGvGp~T~~mLl~n~v~a~~  263 (269)
                      =.||-+ |.|...++.|.+..+-
T Consensus       340 nlP~~v-p~tAS~~ls~~~~~~l  361 (405)
T 4dio_A          340 NVAGRI-AASASLLYAKNLVTFL  361 (405)
T ss_dssp             SGGGGG-HHHHHHHHHHHHHHHH
T ss_pred             CCCccC-HHHHHHHHHHHHHHHH
Confidence            346666 8888888877765553

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=98.41  E-value=4e-06  Score=77.50  Aligned_cols=173  Identities=12%  Similarity=0.133  Sum_probs=107.9

Q ss_pred             HHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccc--cce----
Q 024306           29 KIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH--PLN----  102 (269)
Q Consensus        29 ~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~--~~n----  102 (269)
                      ..+..++.|.++.+...+.. +++++.+.+      .++++++++.-.|..++ .++++..+..|-+-..+  .-|    
T Consensus        32 ~~~~L~~~g~ev~~~~~~~~-~~~~~~~~~------~~ad~li~~~~~~~~~~-~~~l~~~p~Lk~i~~~g~G~d~id~~  103 (351)
T 3jtm_A           32 IRDWLESQGHQYIVTDDKEG-PDCELEKHI------PDLHVLISTPFHPAYVT-AERIKKAKNLKLLLTAGIGSDHIDLQ  103 (351)
T ss_dssp             CHHHHHHTTCEEEEESCCSS-TTSHHHHHT------TTCSEEEECTTSCCCBC-HHHHHHCSSCCEEEESSSCCTTBCHH
T ss_pred             HHHHHHHCCCEEEEeCCCCC-CHHHHHHHh------CCCEEEEEccCCCCCCC-HHHHhhCCCCeEEEEeCeeecccCHH
Confidence            34567888999887766442 345565554      35677766421233444 35666654444443211  111    


Q ss_pred             ----ecccccCCCCCcc-ccCCHHHHHHHH----HH--------------------hCCCCccceEEEEcCCcccHHHHH
Q 024306          103 ----IGNLAMRGREPLF-IPCTPKGCIELL----IR--------------------SGVEIMGKNAVVIGRSNIVGLPTS  153 (269)
Q Consensus       103 ----~g~l~~g~~~~~~-~p~t~~g~~~~l----~~--------------------~~~~l~gk~v~ViG~gg~vg~~~a  153 (269)
                          .|-...  +.+++ -.++++-++-++    ++                    .+.++.||++.|||.|.+ |+++|
T Consensus       104 ~a~~~gI~V~--n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~I-G~~vA  180 (351)
T 3jtm_A          104 AAAAAGLTVA--EVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRI-GKLLL  180 (351)
T ss_dssp             HHHHTTCEEE--ECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHH-HHHHH
T ss_pred             HHHhcCeeEE--ECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHH-HHHHH
Confidence                111110  12221 223344333222    11                    146799999999999997 99999


Q ss_pred             HHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCC-C---CcccCCC---cCCCcEEEEeeecCC
Q 024306          154 LLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV-A---NLVRGSW---LKPGAVVLDVGTCPV  212 (269)
Q Consensus       154 ~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~-p---~~i~~~~---~~~g~vViDv~~~~~  212 (269)
                      +.|...|++|+.++++.              .++.+.+++||+|+.+++. |   +++..+.   +++|+++||++....
T Consensus       181 ~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~  260 (351)
T 3jtm_A          181 QRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAI  260 (351)
T ss_dssp             HHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGG
T ss_pred             HHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchh
Confidence            99999999999998752              3678889999999999983 2   3565553   689999999996543

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=98.40  E-value=2.7e-06  Score=79.42  Aligned_cols=143  Identities=17%  Similarity=0.207  Sum_probs=99.7

Q ss_pred             HHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC---------CCCHhhhcCCCCEEEeccCC-C----
Q 024306          125 ELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---------TKNPEQITSEADIVIAAAGV-A----  190 (269)
Q Consensus       125 ~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~---------t~~l~~~~~~aDiVIsAtg~-p----  190 (269)
                      .+.++.+.++.||++.|||.|.+ |+++|+.|...|++|..+++.         ..++.+.+++||+|+.+++. +    
T Consensus       108 ~l~r~~g~~l~gktvGIIGlG~I-G~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~  186 (381)
T 3oet_A          108 MLAERDGFSLRDRTIGIVGVGNV-GSRLQTRLEALGIRTLLCDPPRAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPY  186 (381)
T ss_dssp             HHHHHTTCCGGGCEEEEECCSHH-HHHHHHHHHHTTCEEEEECHHHHHTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTT
T ss_pred             HHHHhcCCccCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEECCChHHhccCcccCCHHHHHhhCCEEEEcCcCCccccc
Confidence            34456788999999999999997 999999999999999999652         23678889999999999872 2    


Q ss_pred             ---CcccCCC---cCCCcEEEEeeecCCCCCCC----CCCceeec---ccch------HHHhhHcceecccCCcccHHHH
Q 024306          191 ---NLVRGSW---LKPGAVVLDVGTCPVDDPSC----EYGYRLMG---DVCY------EEAMRLASVITPVPGGVGPMTV  251 (269)
Q Consensus       191 ---~~i~~~~---~~~g~vViDv~~~~~~~~~~----~~~~~l~G---Dvd~------~~~~~~~~~~tpvpgGvGp~T~  251 (269)
                         ++++.+.   +++|+++||++.....+...    ...+++.|   ||-.      ....+..-.+||-.+|.-.=+.
T Consensus       187 ~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~~i~TPHiag~t~e~~  266 (381)
T 3oet_A          187 KTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIGTSHIAGYTLEGK  266 (381)
T ss_dssp             CCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHSSEECSSCTTCCHHHH
T ss_pred             cchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCCcchhhhCCEEECCccCcCcHHHH
Confidence               2455543   58999999999765432100    00012322   5521      1223333468999999876666


Q ss_pred             HHHHHHHHHHHHHHhCC
Q 024306          252 AMLLSNTLDSAKRAYGF  268 (269)
Q Consensus       252 ~mLl~n~v~a~~~~~~~  268 (269)
                      .-+....++.+..|++.
T Consensus       267 ~~~~~~~~~~l~~~l~~  283 (381)
T 3oet_A          267 ARGTTQVFEAYSAFIGR  283 (381)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            66666677777777653

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=98.38  E-value=5.5e-07  Score=86.41  Aligned_cols=82  Identities=22%  Similarity=0.297  Sum_probs=70.4

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEeccCCCCcccCC
Q 024306          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLVRGS  196 (269)
Q Consensus       130 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIsAtg~p~~i~~~  196 (269)
                      .+..+.||+|+|||.|.+ |+.+|+.|...|++|+++++..             .++.+.+++||+||++++.+++++.+
T Consensus       251 ~~~~l~GktVgIIG~G~I-G~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~~t~~lI~~~  329 (479)
T 1v8b_A          251 TDFLISGKIVVICGYGDV-GKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLE  329 (479)
T ss_dssp             HCCCCTTSEEEEECCSHH-HHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCSSSSSBCHH
T ss_pred             cccccCCCEEEEEeeCHH-HHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECCChhhhcCHH
Confidence            567899999999999886 9999999999999999998763             25678899999999999888888765


Q ss_pred             C---cCCCcEEEEeeecCC
Q 024306          197 W---LKPGAVVLDVGTCPV  212 (269)
Q Consensus       197 ~---~~~g~vViDv~~~~~  212 (269)
                      +   +|+|++++|++....
T Consensus       330 ~l~~MK~gailiNvgrg~~  348 (479)
T 1v8b_A          330 HLLKMKNNAVVGNIGHFDD  348 (479)
T ss_dssp             HHTTCCTTCEEEECSSTTT
T ss_pred             HHhhcCCCcEEEEeCCCCc
Confidence            4   588999999997544

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.36  E-value=8.9e-07  Score=82.49  Aligned_cols=78  Identities=23%  Similarity=0.296  Sum_probs=63.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC----------------------------------------
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN----------------------------------------  172 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~----------------------------------------  172 (269)
                      .+.|++|+|+|+|.+ |+.+++.+...|++|++++++...                                        
T Consensus       169 ~l~g~~V~ViGaG~i-G~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~  247 (384)
T 1l7d_A          169 TVPPARVLVFGVGVA-GLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  247 (384)
T ss_dssp             EECCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCH
T ss_pred             CCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhh
Confidence            678999999999886 999999999999999999865311                                        


Q ss_pred             ---HhhhcCCCCEEEecc---CC--CCcccCC---CcCCCcEEEEeeecC
Q 024306          173 ---PEQITSEADIVIAAA---GV--ANLVRGS---WLKPGAVVLDVGTCP  211 (269)
Q Consensus       173 ---l~~~~~~aDiVIsAt---g~--p~~i~~~---~~~~g~vViDv~~~~  211 (269)
                         +.+.++.+|+||+++   |.  |++++.+   .++++.+|+|+++++
T Consensus       248 ~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~  297 (384)
T 1l7d_A          248 AEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEA  297 (384)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGG
T ss_pred             HHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCC
Confidence               455678899999999   53  3456554   358899999999865

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.35  E-value=9e-09  Score=98.67  Aligned_cols=78  Identities=18%  Similarity=0.230  Sum_probs=56.7

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhC-CCEEEEEeCCCC----------------------CHhhhcCCCCEEEecc
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALTK----------------------NPEQITSEADIVIAAA  187 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t~----------------------~l~~~~~~aDiVIsAt  187 (269)
                      +.++++++|+|+|+|++ |++++..|++. +++|++++|+..                      ++.+.++++|+||+++
T Consensus        18 ~~~l~~k~VlIiGAGgi-G~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~t   96 (467)
T 2axq_A           18 EGRHMGKNVLLLGSGFV-AQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLI   96 (467)
T ss_dssp             -----CEEEEEECCSTT-HHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECS
T ss_pred             ccCCCCCEEEEECChHH-HHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECC
Confidence            45678999999999886 99999999998 678999988621                      1234567899999999


Q ss_pred             CCC-C-cccCCCcCCCcEEEEeee
Q 024306          188 GVA-N-LVRGSWLKPGAVVLDVGT  209 (269)
Q Consensus       188 g~p-~-~i~~~~~~~g~vViDv~~  209 (269)
                      |.. + .+....++.+..++|+.|
T Consensus        97 p~~~~~~v~~a~l~~g~~vvd~~~  120 (467)
T 2axq_A           97 PYTFHPNVVKSAIRTKTDVVTSSY  120 (467)
T ss_dssp             CGGGHHHHHHHHHHHTCEEEECSC
T ss_pred             chhhhHHHHHHHHhcCCEEEEeec
Confidence            853 1 134445677889999887

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.33  E-value=1.3e-06  Score=83.88  Aligned_cols=82  Identities=28%  Similarity=0.370  Sum_probs=69.1

Q ss_pred             HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEeccCCCCccc
Q 024306          128 IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLVR  194 (269)
Q Consensus       128 ~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIsAtg~p~~i~  194 (269)
                      +..+..+.||+++|+|+|++ |+++|+.|+..|++|.++.+..             .++.+.++.+|+++.++|.++.+.
T Consensus       257 r~tg~~L~GKtVvVtGaGgI-G~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~atG~~~vl~  335 (488)
T 3ond_A          257 RATDVMIAGKVAVVAGYGDV-GKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTTGNKDIIM  335 (488)
T ss_dssp             HHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECSSCSCSBC
T ss_pred             HHcCCcccCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCCCChhhhh
Confidence            45678899999999999975 9999999999999999997752             245667889999999999888776


Q ss_pred             CC---CcCCCcEEEEeeec
Q 024306          195 GS---WLKPGAVVLDVGTC  210 (269)
Q Consensus       195 ~~---~~~~g~vViDv~~~  210 (269)
                      .+   .++++.+|++++..
T Consensus       336 ~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          336 LDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             HHHHTTSCTTEEEEESSST
T ss_pred             HHHHHhcCCCeEEEEcCCC
Confidence            53   46889999999964

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.30  E-value=7e-06  Score=75.34  Aligned_cols=134  Identities=15%  Similarity=0.086  Sum_probs=92.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCCEEEeccCC-C---CcccC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV-A---NLVRG  195 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~aDiVIsAtg~-p---~~i~~  195 (269)
                      .++.|+++.|||.|.+ |+++|+.|...|++|+.++++.            .++.+.+++||+|+.+++. +   +++..
T Consensus       161 ~~l~g~tvgIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  239 (335)
T 2g76_A          161 TELNGKTLGILGLGRI-GREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLND  239 (335)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBCH
T ss_pred             cCCCcCEEEEEeECHH-HHHHHHHHHHCCCEEEEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhCH
Confidence            5789999999999997 9999999999999999998753            1467788999999999984 2   34543


Q ss_pred             C---CcCCCcEEEEeeecCCCCCCC----CCCceeec---cc-------chHHHhhHcceecccCCcccHHHHHHHHHHH
Q 024306          196 S---WLKPGAVVLDVGTCPVDDPSC----EYGYRLMG---DV-------CYEEAMRLASVITPVPGGVGPMTVAMLLSNT  258 (269)
Q Consensus       196 ~---~~~~g~vViDv~~~~~~~~~~----~~~~~l~G---Dv-------d~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~  258 (269)
                      +   .+++++++||++.....+...    ...+++-|   ||       +.+-+....-.+||-.+|.-.-+..-+....
T Consensus       240 ~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~~~~~~~~~  319 (335)
T 2g76_A          240 NTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEI  319 (335)
T ss_dssp             HHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHHHHHHHHHH
T ss_pred             HHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHHHHHHHHHH
Confidence            3   578999999999765433110    00012222   33       2122223356689988988766665556666


Q ss_pred             HHHHHHHh
Q 024306          259 LDSAKRAY  266 (269)
Q Consensus       259 v~a~~~~~  266 (269)
                      ++..++|+
T Consensus       320 ~~nl~~~~  327 (335)
T 2g76_A          320 AVQFVDMV  327 (335)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            66555553

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=98.28  E-value=1.9e-05  Score=74.53  Aligned_cols=222  Identities=18%  Similarity=0.158  Sum_probs=129.2

Q ss_pred             HHHHHcCC-eEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccc-cce------
Q 024306           31 KACEEVGI-KSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH-PLN------  102 (269)
Q Consensus        31 ~~~~~~Gi-~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~-~~n------  102 (269)
                      ..+++.|. ++++.  +...+++++.+.+      .+++++.+...  ..++ .++++..+..|-|-..+ -+|      
T Consensus        30 ~~l~~~g~~~v~~~--~~~~~~~~l~~~~------~~~d~l~v~~~--~~i~-~~~l~~~p~Lk~I~~~~~G~d~IDl~~   98 (416)
T 3k5p_A           30 EYFKSSGYTNVTHL--PKALDKADLIKAI------SSAHIIGIRSR--TQLT-EEIFAAANRLIAVGCFSVGTNQVELKA   98 (416)
T ss_dssp             HHHHHTTCCCEEEC--SSCCCHHHHHHHH------TTCSEEEECSS--CCBC-HHHHHHCTTCCEEEECSSCCTTBCHHH
T ss_pred             HHHHHCCCcEEEEC--CCCCCHHHHHHHc------cCCEEEEEcCC--CCCC-HHHHHhCCCcEEEEECccccCccCHHH
Confidence            45667787 66553  3445678877766      34677776542  2233 46777665555553321 111      


Q ss_pred             ---ecccccCCCCCcc-ccCCHHHHHHHHH----H------------------hCCCCccceEEEEcCCcccHHHHHHHH
Q 024306          103 ---IGNLAMRGREPLF-IPCTPKGCIELLI----R------------------SGVEIMGKNAVVIGRSNIVGLPTSLLL  156 (269)
Q Consensus       103 ---~g~l~~g~~~~~~-~p~t~~g~~~~l~----~------------------~~~~l~gk~v~ViG~gg~vg~~~a~~L  156 (269)
                         .|-.. - +.+++ -.++++-++.++-    +                  .+.++.||++.|||.|.+ |+++|+.|
T Consensus        99 a~~~GI~V-~-n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~gktvGIIGlG~I-G~~vA~~l  175 (416)
T 3k5p_A           99 ARKRGIPV-F-NAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNI-GSQVGNLA  175 (416)
T ss_dssp             HHHTTCCE-E-CCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEECCSHH-HHHHHHHH
T ss_pred             HHhcCcEE-E-eCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCCCCEEEEEeeCHH-HHHHHHHH
Confidence               11111 0 12221 1123333322221    0                  146789999999999997 99999999


Q ss_pred             HhCCCEEEEEeCCC----------CCHhhhcCCCCEEEeccCC----CCcccCCC---cCCCcEEEEeeecCCCCCCC--
Q 024306          157 QRHHATVSIVHALT----------KNPEQITSEADIVIAAAGV----ANLVRGSW---LKPGAVVLDVGTCPVDDPSC--  217 (269)
Q Consensus       157 ~~~ga~Vti~~~~t----------~~l~~~~~~aDiVIsAtg~----p~~i~~~~---~~~g~vViDv~~~~~~~~~~--  217 (269)
                      ...|++|+.+++..          .++.+.+++||+|+..++.    .+++..+.   +|+|+++||++.....+...  
T Consensus       176 ~~~G~~V~~yd~~~~~~~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~  255 (416)
T 3k5p_A          176 ESLGMTVRYYDTSDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALA  255 (416)
T ss_dssp             HHTTCEEEEECTTCCCCBTTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHH
T ss_pred             HHCCCEEEEECCcchhcccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHH
Confidence            99999999998642          3578889999999999984    24566553   68999999999765433100  


Q ss_pred             --CCCceee---cccchHH------------HhhHcceecccCCcccHHHHHHHHHHHHHHHHHHh
Q 024306          218 --EYGYRLM---GDVCYEE------------AMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY  266 (269)
Q Consensus       218 --~~~~~l~---GDvd~~~------------~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~~~~~  266 (269)
                        ...+++.   =||-..+            ..-..-.+||-.||.-.-+..-+....++....|+
T Consensus       256 ~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~nl~~~l  321 (416)
T 3k5p_A          256 KVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEYS  321 (416)
T ss_dssp             HHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence              0001222   1331110            11123467888888866555555555555555443

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.27  E-value=8.5e-06  Score=75.64  Aligned_cols=134  Identities=13%  Similarity=0.143  Sum_probs=89.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCCEEEeccCC----CCcccC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV----ANLVRG  195 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~aDiVIsAtg~----p~~i~~  195 (269)
                      .++.||++.|||.|.+ |+++|+.|...|++|+.+++..            .++.+.+++||+|+.+++.    .+++..
T Consensus       172 ~~l~gktvGIIGlG~I-G~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~  250 (365)
T 4hy3_A          172 RLIAGSEIGIVGFGDL-GKALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGA  250 (365)
T ss_dssp             CCSSSSEEEEECCSHH-HHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCH
T ss_pred             cccCCCEEEEecCCcc-cHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCH
Confidence            4688999999999997 9999999999999999998752            2567889999999999883    235655


Q ss_pred             C---CcCCCcEEEEeeecCCCCCCC----CCCcee--eccc--------chHHHhhHcceecccCCcccHHHHHHHHHHH
Q 024306          196 S---WLKPGAVVLDVGTCPVDDPSC----EYGYRL--MGDV--------CYEEAMRLASVITPVPGGVGPMTVAMLLSNT  258 (269)
Q Consensus       196 ~---~~~~g~vViDv~~~~~~~~~~----~~~~~l--~GDv--------d~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~  258 (269)
                      +   .+++|+++||++.....+...    ...+++  .=||        |..-..-..-.+||-.||.-.-+...+....
T Consensus       251 ~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~  330 (365)
T 4hy3_A          251 EAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIVAASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKKMGDMV  330 (365)
T ss_dssp             HHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSEEEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHHHHHHHHHH
T ss_pred             HHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCceEEeeCCCCCCCCCCChhhcCCCEEECCccccCHHHHHHHHHHHH
Confidence            5   368999999999332211000    000000  0011        0001111245689999998777777777777


Q ss_pred             HHHHHHHh
Q 024306          259 LDSAKRAY  266 (269)
Q Consensus       259 v~a~~~~~  266 (269)
                      ++..+.|+
T Consensus       331 ~~ni~~~~  338 (365)
T 4hy3_A          331 LEDMDLMD  338 (365)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77666664

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=98.27  E-value=5.4e-06  Score=76.63  Aligned_cols=135  Identities=13%  Similarity=0.117  Sum_probs=92.7

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEeccCC----CCcc
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV----ANLV  193 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIsAtg~----p~~i  193 (269)
                      +.++.||++.|||.|.+ |+++|+.|...|++|+.++++.             .++.+.+++||+|+.+++.    .+++
T Consensus       155 ~~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li  233 (352)
T 3gg9_A          155 GRVLKGQTLGIFGYGKI-GQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSII  233 (352)
T ss_dssp             BCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred             CccCCCCEEEEEeECHH-HHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhh
Confidence            35689999999999997 9999999999999999997641             3678889999999999883    2355


Q ss_pred             cCC---CcCCCcEEEEeeecCCCCCCCC----CCceeec---cc--------chHHHhhHcceecccCCcccHHHHHHHH
Q 024306          194 RGS---WLKPGAVVLDVGTCPVDDPSCE----YGYRLMG---DV--------CYEEAMRLASVITPVPGGVGPMTVAMLL  255 (269)
Q Consensus       194 ~~~---~~~~g~vViDv~~~~~~~~~~~----~~~~l~G---Dv--------d~~~~~~~~~~~tpvpgGvGp~T~~mLl  255 (269)
                      ..+   .+++|+++||++.....+....    ..+++.|   ||        |..-+.-..-.+||-.||.-.-+...+.
T Consensus       234 ~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~  313 (352)
T 3gg9_A          234 TVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYF  313 (352)
T ss_dssp             CHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHHHHH
T ss_pred             CHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHHHHH
Confidence            544   4689999999995443221100    0001111   21        1111122345689999998877777777


Q ss_pred             HHHHHHHHHHh
Q 024306          256 SNTLDSAKRAY  266 (269)
Q Consensus       256 ~n~v~a~~~~~  266 (269)
                      ...++..+.|+
T Consensus       314 ~~~~~ni~~~~  324 (352)
T 3gg9_A          314 GIAFQNILDIL  324 (352)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777776664

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=98.26  E-value=4.4e-06  Score=77.02  Aligned_cols=135  Identities=15%  Similarity=0.154  Sum_probs=92.3

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCCEEEeccCC----CCccc
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV----ANLVR  194 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~aDiVIsAtg~----p~~i~  194 (269)
                      +.++.||++.|||.|.+ |+++|+.|...|++|..++++.            .++.+.+++||+|+.+++.    .+++.
T Consensus       168 g~~l~gktvGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~  246 (345)
T 4g2n_A          168 GMGLTGRRLGIFGMGRI-GRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLD  246 (345)
T ss_dssp             BCCCTTCEEEEESCSHH-HHHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBC
T ss_pred             ccccCCCEEEEEEeChh-HHHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhC
Confidence            35789999999999997 9999999999999999998763            3677889999999999984    24566


Q ss_pred             CCC---cCCCcEEEEeeecCCCCCCCC----CCceeec---ccc-------hHHHhhHcceecccCCcccHHHHHHHHHH
Q 024306          195 GSW---LKPGAVVLDVGTCPVDDPSCE----YGYRLMG---DVC-------YEEAMRLASVITPVPGGVGPMTVAMLLSN  257 (269)
Q Consensus       195 ~~~---~~~g~vViDv~~~~~~~~~~~----~~~~l~G---Dvd-------~~~~~~~~~~~tpvpgGvGp~T~~mLl~n  257 (269)
                      .+.   +++|+++||++.....+....    ..+++.|   ||-       ..-..-..-.+||-.||.-.-+..-+...
T Consensus       247 ~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~  326 (345)
T 4g2n_A          247 HDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAMGWL  326 (345)
T ss_dssp             HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHHHHHHHHH
T ss_pred             HHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHHHHHHHHH
Confidence            553   689999999996543221000    0012332   331       11111124568888888876666666666


Q ss_pred             HHHHHHHHh
Q 024306          258 TLDSAKRAY  266 (269)
Q Consensus       258 ~v~a~~~~~  266 (269)
                      .++..++|+
T Consensus       327 ~~~ni~~~l  335 (345)
T 4g2n_A          327 LIQGIEALN  335 (345)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666665554

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.25  E-value=6.5e-07  Score=84.10  Aligned_cols=77  Identities=21%  Similarity=0.270  Sum_probs=61.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------------------------C
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------------------N  172 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------------------------~  172 (269)
                      +.|++|+|+|+|.+ |+.+++.+...|++|++++++..                                         .
T Consensus       170 l~g~~V~ViGaG~i-G~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          170 VPPAKVMVIGAGVA-GLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             ECCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence            67999999999886 99999999999999999987521                                         1


Q ss_pred             HhhhcCCCCEEEeccCC-----CCcccCCC---cCCCcEEEEeeecC
Q 024306          173 PEQITSEADIVIAAAGV-----ANLVRGSW---LKPGAVVLDVGTCP  211 (269)
Q Consensus       173 l~~~~~~aDiVIsAtg~-----p~~i~~~~---~~~g~vViDv~~~~  211 (269)
                      +.+.++.+|+||++++.     |.+++.++   +++|.+|+|+++++
T Consensus       249 l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~  295 (401)
T 1x13_A          249 FAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQN  295 (401)
T ss_dssp             HHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGG
T ss_pred             HHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCC
Confidence            44566789999999643     35566554   57899999999764

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.23  E-value=9.4e-06  Score=74.67  Aligned_cols=134  Identities=21%  Similarity=0.240  Sum_probs=86.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCCEEEeccCC----CCcccCC--
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV----ANLVRGS--  196 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~aDiVIsAtg~----p~~i~~~--  196 (269)
                      .++.||++.|||.|.+ |+++|+.|...|++|+.++++.         .++.+.+++||+|+.+++.    .+++..+  
T Consensus       167 ~~l~gktiGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l  245 (340)
T 4dgs_A          167 HSPKGKRIGVLGLGQI-GRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLL  245 (340)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHHH
T ss_pred             ccccCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHH
Confidence            5789999999999997 9999999999999999998763         3678889999999999883    2345544  


Q ss_pred             -CcCCCcEEEEeeecCCCCCCC----CCCceeec---ccch-------HHHhhHcceecccCCcccHHHHHHHHHHHHHH
Q 024306          197 -WLKPGAVVLDVGTCPVDDPSC----EYGYRLMG---DVCY-------EEAMRLASVITPVPGGVGPMTVAMLLSNTLDS  261 (269)
Q Consensus       197 -~~~~g~vViDv~~~~~~~~~~----~~~~~l~G---Dvd~-------~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a  261 (269)
                       .+++++++||++.....+...    ...+++.|   ||-.       +-+.-..-.+||-.||.-.-+..-+....++.
T Consensus       246 ~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n  325 (340)
T 4dgs_A          246 QALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLVLAN  325 (340)
T ss_dssp             HHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSSCSSCCHHHHHHHHHHHHHH
T ss_pred             hcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCccchhhCCCEEEcCcCCcCCHHHHHHHHHHHHHH
Confidence             368999999998665433110    00112322   4421       11111234789888988766555555555555


Q ss_pred             HHHHh
Q 024306          262 AKRAY  266 (269)
Q Consensus       262 ~~~~~  266 (269)
                      .++|+
T Consensus       326 l~~~~  330 (340)
T 4dgs_A          326 LAAHF  330 (340)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.21  E-value=1e-05  Score=73.34  Aligned_cols=133  Identities=21%  Similarity=0.226  Sum_probs=90.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------CHhhhcCCCCEEEeccCC----CCcccC---CC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------NPEQITSEADIVIAAAGV----ANLVRG---SW  197 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------~l~~~~~~aDiVIsAtg~----p~~i~~---~~  197 (269)
                      .++.|+++.|||.|.+ |+++++.|...|++|++++++..       ++.+.+++||+|+.+++.    .+++..   ..
T Consensus       140 ~~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~  218 (311)
T 2cuk_A          140 LDLQGLTLGLVGMGRI-GQAVAKRALAFGMRVVYHARTPKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFA  218 (311)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSSSSCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTT
T ss_pred             cCCCCCEEEEEEECHH-HHHHHHHHHHCCCEEEEECCCCcccccccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhh
Confidence            4689999999999997 99999999999999999987642       577889999999999874    234543   25


Q ss_pred             cCCCcEEEEeeecCCCCCC----CCCCceeec---ccc--------hHHHhhHcceecccCCcccHHHHHHHHHHHHHHH
Q 024306          198 LKPGAVVLDVGTCPVDDPS----CEYGYRLMG---DVC--------YEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSA  262 (269)
Q Consensus       198 ~~~g~vViDv~~~~~~~~~----~~~~~~l~G---Dvd--------~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~  262 (269)
                      +++++++||++.....+..    ... +++-|   ||-        .+-+....-.+||-.+|.-.-+..-+....++..
T Consensus       219 mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl  297 (311)
T 2cuk_A          219 MKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENL  297 (311)
T ss_dssp             SCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHHHHHHHH
Confidence            7899999999976543210    000 12211   221        1112223567888888886665555566666555


Q ss_pred             HHHh
Q 024306          263 KRAY  266 (269)
Q Consensus       263 ~~~~  266 (269)
                      ++|+
T Consensus       298 ~~~~  301 (311)
T 2cuk_A          298 LAVL  301 (311)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5553

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=98.19  E-value=9.2e-06  Score=75.81  Aligned_cols=143  Identities=17%  Similarity=0.145  Sum_probs=96.2

Q ss_pred             HHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC---------CCCHhhhcCCCCEEEeccCC-C---
Q 024306          124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---------TKNPEQITSEADIVIAAAGV-A---  190 (269)
Q Consensus       124 ~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~---------t~~l~~~~~~aDiVIsAtg~-p---  190 (269)
                      +.+.++.+.++.|+++.|||.|.+ |+++|+.|...|++|+.+++.         ..++.+.+++||+|+.+++. +   
T Consensus       104 L~l~r~~~~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~  182 (380)
T 2o4c_A          104 LAMAEVRGADLAERTYGVVGAGQV-GGRLVEVLRGLGWKVLVCDPPRQAREPDGEFVSLERLLAEADVISLHTPLNRDGE  182 (380)
T ss_dssp             HHHHHHHTCCGGGCEEEEECCSHH-HHHHHHHHHHTTCEEEEECHHHHHHSTTSCCCCHHHHHHHCSEEEECCCCCSSSS
T ss_pred             HHHHhhhhcccCCCEEEEEeCCHH-HHHHHHHHHHCCCEEEEEcCChhhhccCcccCCHHHHHHhCCEEEEeccCccccc
Confidence            334455688999999999999996 999999999999999998642         23577888999999998872 2   


Q ss_pred             ----CcccCC---CcCCCcEEEEeeecCCCCCCC----CCCce---eecccch------HHHhhHcceecccCCcccHHH
Q 024306          191 ----NLVRGS---WLKPGAVVLDVGTCPVDDPSC----EYGYR---LMGDVCY------EEAMRLASVITPVPGGVGPMT  250 (269)
Q Consensus       191 ----~~i~~~---~~~~g~vViDv~~~~~~~~~~----~~~~~---l~GDvd~------~~~~~~~~~~tpvpgGvGp~T  250 (269)
                          ++++.+   .+++|+++||++.....+...    ...++   ..=||-.      ....+..-.+||-.+|.-.-+
T Consensus       183 ~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~~nvi~TPHiag~t~e~  262 (380)
T 2o4c_A          183 HPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPELAARCLIATPHIAGYSLEG  262 (380)
T ss_dssp             SCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHTTCSEECSSCTTCCHHH
T ss_pred             cchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCCchhhccCCEEEccccCcCCHHH
Confidence                345543   468999999999765433100    00001   1223310      112223446899999987766


Q ss_pred             HHHHHHHHHHHHHHHhC
Q 024306          251 VAMLLSNTLDSAKRAYG  267 (269)
Q Consensus       251 ~~mLl~n~v~a~~~~~~  267 (269)
                      ..-...+.++...+|++
T Consensus       263 ~~~~~~~~~~nl~~~l~  279 (380)
T 2o4c_A          263 KLRGTAQIYQAYCAWRG  279 (380)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence            66666666666666553

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.16  E-value=5.2e-06  Score=75.90  Aligned_cols=81  Identities=20%  Similarity=0.306  Sum_probs=66.6

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCCEEEeccCC----CCccc
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV----ANLVR  194 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~aDiVIsAtg~----p~~i~  194 (269)
                      +.++.||++.|||.|.+ |+++|+.|...|++|+.++++.            .++.+.+++||+|+.+++.    .+++.
T Consensus       135 ~~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~  213 (324)
T 3hg7_A          135 YQGLKGRTLLILGTGSI-GQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFT  213 (324)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBC
T ss_pred             CcccccceEEEEEECHH-HHHHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhH
Confidence            45789999999999997 9999999999999999998753            2467789999999999883    23565


Q ss_pred             CCC---cCCCcEEEEeeecCC
Q 024306          195 GSW---LKPGAVVLDVGTCPV  212 (269)
Q Consensus       195 ~~~---~~~g~vViDv~~~~~  212 (269)
                      .+.   +++|+++||++....
T Consensus       214 ~~~l~~mk~gailIN~aRG~~  234 (324)
T 3hg7_A          214 ASRFEHCKPGAILFNVGRGNA  234 (324)
T ss_dssp             TTTTTCSCTTCEEEECSCGGG
T ss_pred             HHHHhcCCCCcEEEECCCchh
Confidence            554   588999999996654

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.13  E-value=3.7e-06  Score=76.59  Aligned_cols=81  Identities=14%  Similarity=0.107  Sum_probs=66.1

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------CHhhhcCCCCEEEeccCC----CCccc
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGV----ANLVR  194 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------~l~~~~~~aDiVIsAtg~----p~~i~  194 (269)
                      +.++.||++.|||.|.+ |+++|+.|...|++|+.++++..            ++.+.+++||+|+.+++.    .+++.
T Consensus       134 ~~~l~g~tvGIiG~G~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~  212 (315)
T 3pp8_A          134 EYTREEFSVGIMGAGVL-GAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIIN  212 (315)
T ss_dssp             CCCSTTCCEEEECCSHH-HHHHHHHHHTTTCCEEEEESSCCCCTTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBS
T ss_pred             CCCcCCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEEcCCchhhhhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhcc
Confidence            35789999999999997 99999999999999999987632            467788999999999883    33565


Q ss_pred             CC---CcCCCcEEEEeeecCC
Q 024306          195 GS---WLKPGAVVLDVGTCPV  212 (269)
Q Consensus       195 ~~---~~~~g~vViDv~~~~~  212 (269)
                      .+   .+++|+++||++....
T Consensus       213 ~~~l~~mk~gailIN~aRG~~  233 (315)
T 3pp8_A          213 SELLDQLPDGAYVLNLARGVH  233 (315)
T ss_dssp             HHHHTTSCTTEEEEECSCGGG
T ss_pred             HHHHhhCCCCCEEEECCCChh
Confidence            44   4689999999996543

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.12  E-value=5.6e-06  Score=75.24  Aligned_cols=75  Identities=21%  Similarity=0.305  Sum_probs=61.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHh-CC-CEEEEEeCCCC-------------------CHhhhcCCCCEEEeccCCCCc
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQR-HH-ATVSIVHALTK-------------------NPEQITSEADIVIAAAGVANL  192 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~-~g-a~Vti~~~~t~-------------------~l~~~~~~aDiVIsAtg~p~~  192 (269)
                      -..++++|||+|.. |+..+..|.. ++ .+|++++|+ +                   ++++.+++|||||++|+...+
T Consensus       119 ~~~~~v~iIGaG~~-a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~~~~eav~~aDIVi~aT~s~~p  196 (313)
T 3hdj_A          119 PRSSVLGLFGAGTQ-GAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMAAPADIAAQADIVVTATRSTTP  196 (313)
T ss_dssp             TTCCEEEEECCSHH-HHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEECCHHHHHHHCSEEEECCCCSSC
T ss_pred             CCCcEEEEECccHH-HHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEeCHHHHHhhCCEEEEccCCCCc
Confidence            35789999999997 9999998876 34 479999987 2                   234556789999999997654


Q ss_pred             -ccCCCcCCCcEEEEeeec
Q 024306          193 -VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       193 -i~~~~~~~g~vViDv~~~  210 (269)
                       ++.+|+++|++|+|+|..
T Consensus       197 vl~~~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          197 LFAGQALRAGAFVGAIGSS  215 (313)
T ss_dssp             SSCGGGCCTTCEEEECCCS
T ss_pred             ccCHHHcCCCcEEEECCCC
Confidence             788999999999999975

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.12  E-value=4e-06  Score=76.63  Aligned_cols=134  Identities=16%  Similarity=0.133  Sum_probs=88.4

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCCEEEeccCC----CCccc
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV----ANLVR  194 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~aDiVIsAtg~----p~~i~  194 (269)
                      +.++.||++.|||.|.+ |+++|+.|...|++|+.++++.            .++.+.+++||+|+.+++.    .+++.
T Consensus       132 ~~~l~gktvGIiGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~  210 (324)
T 3evt_A          132 TSTLTGQQLLIYGTGQI-GQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFS  210 (324)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBS
T ss_pred             CccccCCeEEEECcCHH-HHHHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcC
Confidence            56789999999999997 9999999999999999998753            1456788999999999883    33565


Q ss_pred             CC---CcCCCcEEEEeeecCCCCCCC----CCCceeec---ccchH--------HHhhHcceecccCCcccHHHHHHHHH
Q 024306          195 GS---WLKPGAVVLDVGTCPVDDPSC----EYGYRLMG---DVCYE--------EAMRLASVITPVPGGVGPMTVAMLLS  256 (269)
Q Consensus       195 ~~---~~~~g~vViDv~~~~~~~~~~----~~~~~l~G---Dvd~~--------~~~~~~~~~tpvpgGvGp~T~~mLl~  256 (269)
                      .+   .+++|+++||++.....+...    ...+++.|   ||-..        -+.-..-.+||-.+|.-.-+..-+..
T Consensus       211 ~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~  290 (324)
T 3evt_A          211 TELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFP  290 (324)
T ss_dssp             HHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHHHHH
T ss_pred             HHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHHHHH
Confidence            54   368999999999654322100    00012222   33211        11112346788888886544455555


Q ss_pred             HHHHHHHHH
Q 024306          257 NTLDSAKRA  265 (269)
Q Consensus       257 n~v~a~~~~  265 (269)
                      ..++..++|
T Consensus       291 ~~~~nl~~~  299 (324)
T 3evt_A          291 IFAANFAQF  299 (324)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555544

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.10  E-value=6.1e-06  Score=76.70  Aligned_cols=78  Identities=31%  Similarity=0.413  Sum_probs=61.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcCCCCEEEeccCCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGVAN  191 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~aDiVIsAtg~p~  191 (269)
                      .+.|++|+|+|+|++ |+.+++.+...|++|++++++..                     ++.+.++++|+||++++.|.
T Consensus       165 ~l~g~~V~ViG~G~i-G~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~  243 (377)
T 2vhw_A          165 GVEPADVVVIGAGTA-GYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPG  243 (377)
T ss_dssp             TBCCCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTT
T ss_pred             CCCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCC
Confidence            478999999999886 99999999999999999986521                     13345678999999997553


Q ss_pred             -----cccCC---CcCCCcEEEEeeecC
Q 024306          192 -----LVRGS---WLKPGAVVLDVGTCP  211 (269)
Q Consensus       192 -----~i~~~---~~~~g~vViDv~~~~  211 (269)
                           ++..+   .++++.+++|++..+
T Consensus       244 ~~t~~li~~~~l~~mk~g~~iV~va~~~  271 (377)
T 2vhw_A          244 AKAPKLVSNSLVAHMKPGAVLVDIAIDQ  271 (377)
T ss_dssp             SCCCCCBCHHHHTTSCTTCEEEEGGGGT
T ss_pred             CCCcceecHHHHhcCCCCcEEEEEecCC
Confidence                 34433   468899999999754

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.10  E-value=5.6e-06  Score=79.79  Aligned_cols=81  Identities=22%  Similarity=0.323  Sum_probs=67.3

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEeccCCCCcccC-
Q 024306          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGVANLVRG-  195 (269)
Q Consensus       130 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIsAtg~p~~i~~-  195 (269)
                      .+..+.|++|+|+|.|.+ |+.+++.|...|++|+++++..             .++.+.++++|+||.++|.++.+.. 
T Consensus       268 ~~~~l~GktV~IiG~G~I-G~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~~l~e~l~~aDvVi~atgt~~~i~~~  346 (494)
T 3ce6_A          268 TDALIGGKKVLICGYGDV-GKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATGNKDIIMLE  346 (494)
T ss_dssp             HCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHGGGCSEEEECSSSSCSBCHH
T ss_pred             cCCCCCcCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEecHHHHHhCCCEEEECCCCHHHHHHH
Confidence            345789999999999886 9999999999999999998653             2355678899999999998887764 


Q ss_pred             --CCcCCCcEEEEeeecC
Q 024306          196 --SWLKPGAVVLDVGTCP  211 (269)
Q Consensus       196 --~~~~~g~vViDv~~~~  211 (269)
                        +.++++.++++++...
T Consensus       347 ~l~~mk~ggilvnvG~~~  364 (494)
T 3ce6_A          347 HIKAMKDHAILGNIGHFD  364 (494)
T ss_dssp             HHHHSCTTCEEEECSSSG
T ss_pred             HHHhcCCCcEEEEeCCCC
Confidence              3478999999999754

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=98.10  E-value=4.4e-06  Score=75.25  Aligned_cols=79  Identities=16%  Similarity=0.268  Sum_probs=65.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCCEEEeccCC-C---CcccCC--
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV-A---NLVRGS--  196 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~aDiVIsAtg~-p---~~i~~~--  196 (269)
                      .++.||++.|||.|.+ |+++|+.|...|++|+.++++.         .++.+.+++||+|+.+++. +   +++..+  
T Consensus       118 ~~l~g~tvGIIGlG~I-G~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l  196 (290)
T 3gvx_A          118 TLLYGKALGILGYGGI-GRRVAHLAKAFGMRVIAYTRSSVDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLL  196 (290)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHHHTCEEEEECSSCCCTTCSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHH
T ss_pred             eeeecchheeeccCch-hHHHHHHHHhhCcEEEEEeccccccccccccCChHHHhhccCeEEEEeeccccchhhhhHHHH
Confidence            3589999999999997 9999999999999999998763         3678889999999999983 3   345443  


Q ss_pred             -CcCCCcEEEEeeecC
Q 024306          197 -WLKPGAVVLDVGTCP  211 (269)
Q Consensus       197 -~~~~g~vViDv~~~~  211 (269)
                       .+++|+++||++...
T Consensus       197 ~~mk~gailIN~aRG~  212 (290)
T 3gvx_A          197 ANARKNLTIVNVARAD  212 (290)
T ss_dssp             TTCCTTCEEEECSCGG
T ss_pred             hhhhcCceEEEeehhc
Confidence             478999999999654

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.09  E-value=1.9e-05  Score=71.48  Aligned_cols=134  Identities=18%  Similarity=0.217  Sum_probs=92.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------CHhhhcCCCCEEEeccCC-C---CcccC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGV-A---NLVRG  195 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------~l~~~~~~aDiVIsAtg~-p---~~i~~  195 (269)
                      .++.|+++.|||.|.+ |+++|+.|...|++|+.++++..            ++.+.+++||+|+.+++. +   +++..
T Consensus       138 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~  216 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRI-GYQVAKIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINE  216 (307)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCH
T ss_pred             cccCCceEEEEccCHH-HHHHHHHHHHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCH
Confidence            4789999999999997 99999999999999999987642            466778899999999983 2   34654


Q ss_pred             C---CcCCCcEEEEeeecCCCCCCC----CCCceeec---cc--------chHHHhhHcceecccCCcccHHHHHHHHHH
Q 024306          196 S---WLKPGAVVLDVGTCPVDDPSC----EYGYRLMG---DV--------CYEEAMRLASVITPVPGGVGPMTVAMLLSN  257 (269)
Q Consensus       196 ~---~~~~g~vViDv~~~~~~~~~~----~~~~~l~G---Dv--------d~~~~~~~~~~~tpvpgGvGp~T~~mLl~n  257 (269)
                      +   .+++|+++||++.....+...    ...+++-|   ||        |.+-+....-.+||-.+|.-.-+..-+...
T Consensus       217 ~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~  296 (307)
T 1wwk_A          217 ERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVE  296 (307)
T ss_dssp             HHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHHHHH
T ss_pred             HHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHHHHH
Confidence            3   468999999999765432100    00001211   22        111122235678999998877666666666


Q ss_pred             HHHHHHHHh
Q 024306          258 TLDSAKRAY  266 (269)
Q Consensus       258 ~v~a~~~~~  266 (269)
                      .++..++|+
T Consensus       297 ~~~nl~~~~  305 (307)
T 1wwk_A          297 VAEKVVKIL  305 (307)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666654

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=98.09  E-value=1.8e-05  Score=72.30  Aligned_cols=134  Identities=19%  Similarity=0.177  Sum_probs=89.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------CHhhhcCCCCEEEeccCCC----CcccC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGVA----NLVRG  195 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------~l~~~~~~aDiVIsAtg~p----~~i~~  195 (269)
                      .++.|+++.|||.|.+ |+++|..|...|++|++++++..            ++.+.+++||+||.+++..    +++..
T Consensus       146 ~~l~g~~vgIIG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~  224 (334)
T 2dbq_A          146 YDVYGKTIGIIGLGRI-GQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINE  224 (334)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTCBCH
T ss_pred             cCCCCCEEEEEccCHH-HHHHHHHHHhCCCEEEEECCCcchhhHhhcCcccCCHHHHHhhCCEEEECCCCChHHHHhhCH
Confidence            4789999999999886 99999999999999999987632            4567788999999999843    34543


Q ss_pred             ---CCcCCCcEEEEeeecCCCCCCC----CCCceeec---ccc-------hHHHhhHcceecccCCcccHHHHHHHHHHH
Q 024306          196 ---SWLKPGAVVLDVGTCPVDDPSC----EYGYRLMG---DVC-------YEEAMRLASVITPVPGGVGPMTVAMLLSNT  258 (269)
Q Consensus       196 ---~~~~~g~vViDv~~~~~~~~~~----~~~~~l~G---Dvd-------~~~~~~~~~~~tpvpgGvGp~T~~mLl~n~  258 (269)
                         ..+++++++||++.....+...    ...+++.|   ||-       ..-+.-..-.+||-.||.-.-+..-+....
T Consensus       225 ~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~~~~~~~~~~~  304 (334)
T 2dbq_A          225 ERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMAELV  304 (334)
T ss_dssp             HHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSHHHHHHHHHHH
T ss_pred             HHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcHHHHHHHHHHH
Confidence               3468999999998654322000    00012222   331       111222345678888887666655666666


Q ss_pred             HHHHHHHh
Q 024306          259 LDSAKRAY  266 (269)
Q Consensus       259 v~a~~~~~  266 (269)
                      ++..++|+
T Consensus       305 ~~n~~~~~  312 (334)
T 2dbq_A          305 AKNLIAFK  312 (334)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655553

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.09  E-value=8.1e-06  Score=73.84  Aligned_cols=79  Identities=25%  Similarity=0.307  Sum_probs=65.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------CCHhhhcCCCCEEEeccCC----CCcccCC---C
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------KNPEQITSEADIVIAAAGV----ANLVRGS---W  197 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------~~l~~~~~~aDiVIsAtg~----p~~i~~~---~  197 (269)
                      ++.|+++.|||.|.+ |+++|+.|...|++|+.++++.        .++.+.+++||+|+.+++.    .+++..+   .
T Consensus       121 ~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~  199 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEI-GTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLAL  199 (303)
T ss_dssp             CCTTCEEEEESCSTH-HHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTT
T ss_pred             CCCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEECCCccccCcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhh
Confidence            689999999999997 9999999999999999998653        2567889999999999984    2345533   4


Q ss_pred             cCCCcEEEEeeecCC
Q 024306          198 LKPGAVVLDVGTCPV  212 (269)
Q Consensus       198 ~~~g~vViDv~~~~~  212 (269)
                      +++|+++||++....
T Consensus       200 mk~gailin~srg~~  214 (303)
T 1qp8_A          200 MAEDAVFVNVGRAEV  214 (303)
T ss_dssp             SCTTCEEEECSCGGG
T ss_pred             CCCCCEEEECCCCcc
Confidence            689999999997654

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=98.07  E-value=4.7e-06  Score=76.79  Aligned_cols=134  Identities=19%  Similarity=0.147  Sum_probs=91.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------CHhhhcCCCCEEEeccCC----CCcccCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------NPEQITSEADIVIAAAGV----ANLVRGSW  197 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------~l~~~~~~aDiVIsAtg~----p~~i~~~~  197 (269)
                      .++.||++.|||.|.+ |+++|+.|...|++|+.++++..          ++.+.+++||+|+.+++.    .+++..+.
T Consensus       144 ~~l~gktvgIiGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~  222 (343)
T 2yq5_A          144 NEIYNLTVGLIGVGHI-GSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQ  222 (343)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCGGGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHH
T ss_pred             cccCCCeEEEEecCHH-HHHHHHHHhhCCCEEEEECCChhhhhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHH
Confidence            3678999999999997 99999999999999999987632          467888999999999983    33565553


Q ss_pred             ---cCCCcEEEEeeecCCCCCCCC----CCcee---ecccchHH---------------------HhhHcceecccCCcc
Q 024306          198 ---LKPGAVVLDVGTCPVDDPSCE----YGYRL---MGDVCYEE---------------------AMRLASVITPVPGGV  246 (269)
Q Consensus       198 ---~~~g~vViDv~~~~~~~~~~~----~~~~l---~GDvd~~~---------------------~~~~~~~~tpvpgGv  246 (269)
                         +++|+++||++.....+....    ..+++   .=||-..+                     ..-..-.+||-.||.
T Consensus       223 l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia~~  302 (343)
T 2yq5_A          223 LKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFY  302 (343)
T ss_dssp             HHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEECSSCTTC
T ss_pred             HhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEECCccccc
Confidence               689999999996543221000    00011   11332111                     111244588888888


Q ss_pred             cHHHHHHHHHHHHHHHHHHh
Q 024306          247 GPMTVAMLLSNTLDSAKRAY  266 (269)
Q Consensus       247 Gp~T~~mLl~n~v~a~~~~~  266 (269)
                      -.-+..-+....++..+.|+
T Consensus       303 t~ea~~~~~~~~~~ni~~~l  322 (343)
T 2yq5_A          303 TETSIRNMVQICLTDQLTIA  322 (343)
T ss_dssp             BHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            77776666666666666554

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=98.07  E-value=6.8e-06  Score=75.17  Aligned_cols=80  Identities=19%  Similarity=0.252  Sum_probs=65.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------CHhhhcCCCCEEEeccCC----CCcccCC-
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------NPEQITSEADIVIAAAGV----ANLVRGS-  196 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------~l~~~~~~aDiVIsAtg~----p~~i~~~-  196 (269)
                      .++.|+++.|||.|.+ |+.+|+.|...|++|++++++..          ++.+.+++||+|+.+++.    .+++..+ 
T Consensus       142 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~  220 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGRI-GRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDF  220 (331)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCSCTTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHH
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCccHHHHhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHH
Confidence            4689999999999997 99999999999999999987532          466788999999999884    2356443 


Q ss_pred             --CcCCCcEEEEeeecCC
Q 024306          197 --WLKPGAVVLDVGTCPV  212 (269)
Q Consensus       197 --~~~~g~vViDv~~~~~  212 (269)
                        .+++|+++||++....
T Consensus       221 l~~mk~ga~lin~srg~~  238 (331)
T 1xdw_A          221 LKKMKDGAILVNCARGQL  238 (331)
T ss_dssp             HHTSCTTEEEEECSCGGG
T ss_pred             HhhCCCCcEEEECCCccc
Confidence              4689999999996543

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=98.06  E-value=6.1e-06  Score=75.56  Aligned_cols=135  Identities=19%  Similarity=0.193  Sum_probs=90.9

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEeccCC----CCcc
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV----ANLV  193 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIsAtg~----p~~i  193 (269)
                      +.++.||++.|||.|.+ |+++|+.|...|++|+.++++.             .++.+.+++||+|+.+++.    .+++
T Consensus       140 ~~~l~g~tvGIIG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li  218 (330)
T 4e5n_A          140 GTGLDNATVGFLGMGAI-GLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLV  218 (330)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred             CCccCCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHHHh
Confidence            34689999999999997 9999999999999999998764             2466788999999999983    2356


Q ss_pred             cCC---CcCCCcEEEEeeecCCCCCCC----CCCcee---ecccch---------------HHHhhHcceecccCCcccH
Q 024306          194 RGS---WLKPGAVVLDVGTCPVDDPSC----EYGYRL---MGDVCY---------------EEAMRLASVITPVPGGVGP  248 (269)
Q Consensus       194 ~~~---~~~~g~vViDv~~~~~~~~~~----~~~~~l---~GDvd~---------------~~~~~~~~~~tpvpgGvGp  248 (269)
                      ..+   .+++|+++||++.....+...    ...+++   .=||-.               .-+.-..-.+||-.+|.-.
T Consensus       219 ~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t~  298 (330)
T 4e5n_A          219 NAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVR  298 (330)
T ss_dssp             CHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCCH
T ss_pred             CHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCChH
Confidence            544   468999999999654322100    000011   113321               1111124568998898876


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 024306          249 MTVAMLLSNTLDSAKRAY  266 (269)
Q Consensus       249 ~T~~mLl~n~v~a~~~~~  266 (269)
                      -+...+....++..++|+
T Consensus       299 e~~~~~~~~~~~ni~~~~  316 (330)
T 4e5n_A          299 AVRLEIERCAAQNILQAL  316 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666666666666665554

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.05  E-value=1.7e-05  Score=71.70  Aligned_cols=78  Identities=19%  Similarity=0.353  Sum_probs=62.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhC-CC-EEEEEeCCC-----------------CCHhhhcCCCCEEEeccCCCC-c
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRH-HA-TVSIVHALT-----------------KNPEQITSEADIVIAAAGVAN-L  192 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga-~Vti~~~~t-----------------~~l~~~~~~aDiVIsAtg~p~-~  192 (269)
                      ....+++.|||.|.+ |++++..|.+. |. +|++++|+.                 .++.+.++++|+||++|+... .
T Consensus       132 ~~~~~~igiIG~G~~-g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~~~v  210 (312)
T 2i99_A          132 PPSSEVLCILGAGVQ-AYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLATEPI  210 (312)
T ss_dssp             CTTCCEEEEECCSHH-HHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCSSCC
T ss_pred             CCCCcEEEEECCcHH-HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCCCcc
Confidence            457889999999997 99999998765 76 799998752                 245677889999999998544 3


Q ss_pred             ccCCCcCCCcEEEEee-ecC
Q 024306          193 VRGSWLKPGAVVLDVG-TCP  211 (269)
Q Consensus       193 i~~~~~~~g~vViDv~-~~~  211 (269)
                      +..+++++|.+|+|++ +.|
T Consensus       211 ~~~~~l~~g~~vi~~g~~~p  230 (312)
T 2i99_A          211 LFGEWVKPGAHINAVGASRP  230 (312)
T ss_dssp             BCGGGSCTTCEEEECCCCST
T ss_pred             cCHHHcCCCcEEEeCCCCCC
Confidence            6668999999999996 444

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=98.05  E-value=9.2e-06  Score=73.96  Aligned_cols=79  Identities=14%  Similarity=0.145  Sum_probs=65.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC-CC-------------CCHhhhcCCCCEEEeccCC-C---Ccc
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA-LT-------------KNPEQITSEADIVIAAAGV-A---NLV  193 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~-~t-------------~~l~~~~~~aDiVIsAtg~-p---~~i  193 (269)
                      .++.|+++.|||.|.+ |+++|+.|...|++|+++++ +.             .++.+.+++||+|+.+++. +   +++
T Consensus       142 ~~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i  220 (320)
T 1gdh_A          142 EKLDNKTLGIYGFGSI-GQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF  220 (320)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCB
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhc
Confidence            4689999999999997 99999999999999999988 43             1566778899999999983 2   345


Q ss_pred             cC---CCcCCCcEEEEeeecC
Q 024306          194 RG---SWLKPGAVVLDVGTCP  211 (269)
Q Consensus       194 ~~---~~~~~g~vViDv~~~~  211 (269)
                      ..   +.+++++++||++...
T Consensus       221 ~~~~l~~mk~gailIn~arg~  241 (320)
T 1gdh_A          221 NKATIKSLPQGAIVVNTARGD  241 (320)
T ss_dssp             SHHHHTTSCTTEEEEECSCGG
T ss_pred             CHHHHhhCCCCcEEEECCCCc
Confidence            44   4578999999999764

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.05  E-value=1.5e-05  Score=72.53  Aligned_cols=78  Identities=15%  Similarity=0.240  Sum_probs=62.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHh-CC-CEEEEEeCCC-------------------CCHhhhcCCCCEEEeccCCCCc
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQR-HH-ATVSIVHALT-------------------KNPEQITSEADIVIAAAGVANL  192 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~-~g-a~Vti~~~~t-------------------~~l~~~~~~aDiVIsAtg~p~~  192 (269)
                      ...+++.|||+|+. |+..+..|.. .+ .+|++++|+.                   .++++.+ ++|+||++|+....
T Consensus       123 ~~~~~v~iIGaG~~-a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~aTp~~~p  200 (322)
T 1omo_A          123 KNSSVFGFIGCGTQ-AYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTTTPSRKP  200 (322)
T ss_dssp             TTCCEEEEECCSHH-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEECCCCSSC
T ss_pred             CCCCEEEEEcCcHH-HHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEeeCCCCc
Confidence            46789999999997 9999998876 34 4699998762                   2345667 89999999996554


Q ss_pred             -ccCCCcCCCcEEEEee-ecCCC
Q 024306          193 -VRGSWLKPGAVVLDVG-TCPVD  213 (269)
Q Consensus       193 -i~~~~~~~g~vViDv~-~~~~~  213 (269)
                       ++.+|+++|+.|+|++ |.|..
T Consensus       201 v~~~~~l~~G~~V~~ig~~~p~~  223 (322)
T 1omo_A          201 VVKAEWVEEGTHINAIGADGPGK  223 (322)
T ss_dssp             CBCGGGCCTTCEEEECSCCSTTC
T ss_pred             eecHHHcCCCeEEEECCCCCCCc
Confidence             6778999999999995 65543

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=98.04  E-value=3e-05  Score=71.36  Aligned_cols=134  Identities=17%  Similarity=0.165  Sum_probs=89.5

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHH-hCCCEEEEEeCCCC--------------CHhhhcCCCCEEEeccCC-C---C
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQ-RHHATVSIVHALTK--------------NPEQITSEADIVIAAAGV-A---N  191 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~-~~ga~Vti~~~~t~--------------~l~~~~~~aDiVIsAtg~-p---~  191 (269)
                      +.++.|+++.|||.|.+ |+++++.|. ..|++|++++++..              ++.+.+++||+|+.+++. +   +
T Consensus       158 ~~~l~g~~vgIIG~G~I-G~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~  236 (348)
T 2w2k_A          158 AHNPRGHVLGAVGLGAI-QKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHH  236 (348)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTT
T ss_pred             CcCCCCCEEEEEEECHH-HHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHH
Confidence            46799999999999997 999999999 99999999987532              456678899999999984 2   3


Q ss_pred             cccCC---CcCCCcEEEEeeecCCCCCCC----CCCceeec---ccch------HHHhh-HcceecccCCcccHHHHHHH
Q 024306          192 LVRGS---WLKPGAVVLDVGTCPVDDPSC----EYGYRLMG---DVCY------EEAMR-LASVITPVPGGVGPMTVAML  254 (269)
Q Consensus       192 ~i~~~---~~~~g~vViDv~~~~~~~~~~----~~~~~l~G---Dvd~------~~~~~-~~~~~tpvpgGvGp~T~~mL  254 (269)
                      ++..+   .+++++++||++.....+...    ...+++.|   ||-.      ..+.+ ..-.+||-.+|.-.-+..-+
T Consensus       237 li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~  316 (348)
T 2w2k_A          237 LIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEF  316 (348)
T ss_dssp             CBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTSSSEEECCSCTTCSHHHHHHH
T ss_pred             HhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCCchhhcCCCEEEcCcCCCCCHHHHHHH
Confidence            45432   468999999998764322000    00013322   3321      11122 24567888888866665555


Q ss_pred             HHHHHHHHHHH
Q 024306          255 LSNTLDSAKRA  265 (269)
Q Consensus       255 l~n~v~a~~~~  265 (269)
                      ....++..++|
T Consensus       317 ~~~~~~ni~~~  327 (348)
T 2w2k_A          317 ERLTMTNIDRF  327 (348)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555555

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.04  E-value=1.6e-06  Score=81.19  Aligned_cols=77  Identities=19%  Similarity=0.145  Sum_probs=62.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCCC---CCHhhhcCCCCEEEeccC----CCCcccCCCc----CC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT---KNPEQITSEADIVIAAAG----VANLVRGSWL----KP  200 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~t---~~l~~~~~~aDiVIsAtg----~p~~i~~~~~----~~  200 (269)
                      ...+|+|||+.|.||+.++.++...|+   .|++++++.   ....+.++++||||+++-    .|.+++.+++    ++
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~~~~i~~aDivIn~vlig~~aP~Lvt~e~v~~m~k~  292 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGPFDEIPQADIFINCIYLSKPIAPFTNMEKLNNPNRR  292 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSCCTHHHHSSEEEECCCCCSSCCCSCCHHHHCCTTCC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCchhhHhhCCEEEECcCcCCCCCcccCHHHHhcCcCC
Confidence            567899999955569999999999998   899997542   111255779999999996    4778998875    77


Q ss_pred             CcEEEEeeecC
Q 024306          201 GAVVLDVGTCP  211 (269)
Q Consensus       201 g~vViDv~~~~  211 (269)
                      |++|+|++..+
T Consensus       293 gsVIVDVA~D~  303 (394)
T 2qrj_A          293 LRTVVDVSADT  303 (394)
T ss_dssp             CCEEEETTCCT
T ss_pred             CeEEEEEecCC
Confidence            89999998875

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=98.02  E-value=4.4e-05  Score=71.50  Aligned_cols=134  Identities=16%  Similarity=0.164  Sum_probs=88.4

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCC----CCc
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV----ANL  192 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~----p~~  192 (269)
                      +.++.||++.|||.|.+ |+++|+.|...|++|+.++++.              .++.+.+++||+|+.+++.    .++
T Consensus       186 ~~~l~gktvGIIGlG~I-G~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~l  264 (393)
T 2nac_A          186 AYDLEAMHVGTVAAGRI-GLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHM  264 (393)
T ss_dssp             CCCCTTCEEEEECCSHH-HHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTC
T ss_pred             CccCCCCEEEEEeECHH-HHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHH
Confidence            45789999999999997 9999999999999999987652              2467888999999999983    235


Q ss_pred             ccCC---CcCCCcEEEEeeecCCCCCCC----CCCceee---cccch--------HHHhhHcceecccCCcccHHHHHHH
Q 024306          193 VRGS---WLKPGAVVLDVGTCPVDDPSC----EYGYRLM---GDVCY--------EEAMRLASVITPVPGGVGPMTVAML  254 (269)
Q Consensus       193 i~~~---~~~~g~vViDv~~~~~~~~~~----~~~~~l~---GDvd~--------~~~~~~~~~~tpvpgGvGp~T~~mL  254 (269)
                      +..+   .+++++++||++.....+...    ...+++-   -||-.        .-+.-..-.+||-.+|.-.-+..-+
T Consensus       265 i~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e~~~~~  344 (393)
T 2nac_A          265 INDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARY  344 (393)
T ss_dssp             BSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHHHHHHH
T ss_pred             hhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHHHHHHH
Confidence            6533   578999999999764332100    0001222   23321        1111123467888888765555444


Q ss_pred             HHHHHHHHHHH
Q 024306          255 LSNTLDSAKRA  265 (269)
Q Consensus       255 l~n~v~a~~~~  265 (269)
                      ....++..+.|
T Consensus       345 ~~~~~~nl~~~  355 (393)
T 2nac_A          345 AAGTREILECF  355 (393)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555544

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=98.02  E-value=8.8e-06  Score=74.51  Aligned_cols=133  Identities=17%  Similarity=0.174  Sum_probs=90.8

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------CHhhhcCCCCEEEeccCC----CCcccCC-
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------NPEQITSEADIVIAAAGV----ANLVRGS-  196 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------~l~~~~~~aDiVIsAtg~----p~~i~~~-  196 (269)
                      .++.|+++.|||.|.+ |+.+|+.|...|++|+.++++..          ++.+.+++||+|+.+++.    .+++..+ 
T Consensus       141 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~  219 (333)
T 1dxy_A          141 KELGQQTVGVMGTGHI-GQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAA  219 (333)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHH
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCcchhhHhccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHH
Confidence            5789999999999997 99999999999999999986532          467788999999999984    2356543 


Q ss_pred             --CcCCCcEEEEeeecCCCCCCC----CCCceee---cccchHH--------------------Hh-hHcceecccCCcc
Q 024306          197 --WLKPGAVVLDVGTCPVDDPSC----EYGYRLM---GDVCYEE--------------------AM-RLASVITPVPGGV  246 (269)
Q Consensus       197 --~~~~g~vViDv~~~~~~~~~~----~~~~~l~---GDvd~~~--------------------~~-~~~~~~tpvpgGv  246 (269)
                        .+++|+++||++.....+...    ...+++-   =||-..+                    +. -..-.+||-.+|.
T Consensus       220 l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~TPHia~~  299 (333)
T 1dxy_A          220 FNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  299 (333)
T ss_dssp             HHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             HhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEECCccccC
Confidence              468999999999876433100    0001232   2443211                    11 1245688888888


Q ss_pred             cHHHHHHHHHHHHHHHHHH
Q 024306          247 GPMTVAMLLSNTLDSAKRA  265 (269)
Q Consensus       247 Gp~T~~mLl~n~v~a~~~~  265 (269)
                      -.-+..-+....++..++|
T Consensus       300 t~e~~~~~~~~~~~nl~~~  318 (333)
T 1dxy_A          300 TETAVHNMVYFSLQHLVDF  318 (333)
T ss_dssp             SHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            7666555555555555544

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.01  E-value=9.2e-06  Score=73.76  Aligned_cols=134  Identities=15%  Similarity=0.167  Sum_probs=90.4

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------CHhhhcCCCCEEEeccCC----CCccc
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGV----ANLVR  194 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------~l~~~~~~aDiVIsAtg~----p~~i~  194 (269)
                      +.++.|+++.|||.|.+ |+++++.|...|++|++++++..            ++.+.+++||+|+.+++.    .+++.
T Consensus       137 ~~~l~g~~vgIIG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~  215 (313)
T 2ekl_A          137 GLELAGKTIGIVGFGRI-GTKVGIIANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIID  215 (313)
T ss_dssp             CCCCTTCEEEEESCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBC
T ss_pred             CCCCCCCEEEEEeeCHH-HHHHHHHHHHCCCEEEEECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhC
Confidence            45789999999999997 99999999999999999987642            456778899999999983    23454


Q ss_pred             CC---CcCCCcEEEEeeecCCCCCCC----CCCceee---ccc-------ch---HHHhhHcceecccCCcccHHHHHHH
Q 024306          195 GS---WLKPGAVVLDVGTCPVDDPSC----EYGYRLM---GDV-------CY---EEAMRLASVITPVPGGVGPMTVAML  254 (269)
Q Consensus       195 ~~---~~~~g~vViDv~~~~~~~~~~----~~~~~l~---GDv-------d~---~~~~~~~~~~tpvpgGvGp~T~~mL  254 (269)
                      .+   .+++++++||++.....+...    ...+++-   -||       |.   +-+....-.+||-.+|.-.-+..-+
T Consensus       216 ~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH~~~~t~~~~~~~  295 (313)
T 2ekl_A          216 YPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRV  295 (313)
T ss_dssp             HHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCSCTTCSHHHHHHH
T ss_pred             HHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEEECCccCcCcHHHHHHH
Confidence            43   468999999999765433100    0001221   133       21   1222345678988888766555555


Q ss_pred             HHHHHHHHHHH
Q 024306          255 LSNTLDSAKRA  265 (269)
Q Consensus       255 l~n~v~a~~~~  265 (269)
                      ....++..++|
T Consensus       296 ~~~~~~n~~~~  306 (313)
T 2ekl_A          296 AEMTTQNLLNA  306 (313)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555544

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.99  E-value=1.5e-05  Score=73.42  Aligned_cols=90  Identities=11%  Similarity=0.132  Sum_probs=67.7

Q ss_pred             CCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHH-hCC-CEEEEEeCCC---------------------CCHh
Q 024306          118 CTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ-RHH-ATVSIVHALT---------------------KNPE  174 (269)
Q Consensus       118 ~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~-~~g-a~Vti~~~~t---------------------~~l~  174 (269)
                      +.+.+++.... . .....+++.|||+|+. |+..+..|. .++ .+|++++|+.                     .++.
T Consensus       113 Taa~s~laa~~-l-a~~~~~~v~iIGaG~~-a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~  189 (350)
T 1x7d_A          113 TAATSLMAAQA-L-ARPNARKMALIGNGAQ-SEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVA  189 (350)
T ss_dssp             HHHHHHHHHHH-H-SCTTCCEEEEECCSTT-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHH
T ss_pred             hhHHHHHHHHH-h-ccccCCeEEEECCcHH-HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHH
Confidence            44455665552 2 2357889999999997 999888764 344 4799998761                     2455


Q ss_pred             hhcCCCCEEEeccCCC--C-cccCCCcCCCcEEEEeeec
Q 024306          175 QITSEADIVIAAAGVA--N-LVRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       175 ~~~~~aDiVIsAtg~p--~-~i~~~~~~~g~vViDv~~~  210 (269)
                      +.+++||+||++|+.+  . ++..+|+++|+.|++++..
T Consensus       190 eav~~aDiVi~aTps~~~~pvl~~~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          190 EAVKGVDIITTVTADKAYATIITPDMLEPGMHLNAVGGD  228 (350)
T ss_dssp             HHHTTCSEEEECCCCSSEEEEECGGGCCTTCEEEECSCC
T ss_pred             HHHhcCCEEEEeccCCCCCceecHHHcCCCCEEEECCCC
Confidence            7788999999999965  2 4788999999999999954

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=97.99  E-value=1.4e-05  Score=73.58  Aligned_cols=134  Identities=16%  Similarity=0.184  Sum_probs=89.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEeccCC-C---Cccc
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV-A---NLVR  194 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIsAtg~-p---~~i~  194 (269)
                      .++.|+++.|||.|.+ |+++|+.|...|++|++++++.             .++.+.+++||+|+.+++. +   +++.
T Consensus       164 ~~l~g~tvGIIG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~  242 (347)
T 1mx3_A          164 ARIRGETLGIIGLGRV-GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN  242 (347)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBS
T ss_pred             cCCCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhH
Confidence            4789999999999997 9999999999999999998653             2566788899999999884 2   3454


Q ss_pred             CC---CcCCCcEEEEeeecCCCCCCCC----CCceeec---ccchH--------HH-hhHcceecccCCcccHHHHHHHH
Q 024306          195 GS---WLKPGAVVLDVGTCPVDDPSCE----YGYRLMG---DVCYE--------EA-MRLASVITPVPGGVGPMTVAMLL  255 (269)
Q Consensus       195 ~~---~~~~g~vViDv~~~~~~~~~~~----~~~~l~G---Dvd~~--------~~-~~~~~~~tpvpgGvGp~T~~mLl  255 (269)
                      .+   .+++++++||++.....+....    ..+++.|   ||-..        .+ .-..-.+||-.+|...-+..-+.
T Consensus       243 ~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~~~  322 (347)
T 1mx3_A          243 DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMR  322 (347)
T ss_dssp             HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHHHH
T ss_pred             HHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHHHH
Confidence            43   4689999999997765331100    0001111   22100        01 11244677888888766666666


Q ss_pred             HHHHHHHHHHh
Q 024306          256 SNTLDSAKRAY  266 (269)
Q Consensus       256 ~n~v~a~~~~~  266 (269)
                      ...++..++|+
T Consensus       323 ~~~~~ni~~~~  333 (347)
T 1mx3_A          323 EEAAREIRRAI  333 (347)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666666553

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=97.98  E-value=1.4e-05  Score=74.09  Aligned_cols=81  Identities=25%  Similarity=0.322  Sum_probs=66.7

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCCC--------------CCHhhhcCCCCEEEeccCCC----C
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT--------------KNPEQITSEADIVIAAAGVA----N  191 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p----~  191 (269)
                      +.++.|+++.|||.|.+ |+++|+.|...|++ |+.++++.              .++.+.+++||+|+.+++..    +
T Consensus       159 ~~~l~g~tvgIIG~G~I-G~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~  237 (364)
T 2j6i_A          159 AYDIEGKTIATIGAGRI-GYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKG  237 (364)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTT
T ss_pred             cccCCCCEEEEECcCHH-HHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHH
Confidence            46799999999999997 99999999999997 99998652              25678889999999999842    4


Q ss_pred             cccC---CCcCCCcEEEEeeecCC
Q 024306          192 LVRG---SWLKPGAVVLDVGTCPV  212 (269)
Q Consensus       192 ~i~~---~~~~~g~vViDv~~~~~  212 (269)
                      ++..   ..+++++++||++....
T Consensus       238 li~~~~l~~mk~ga~lIn~arG~~  261 (364)
T 2j6i_A          238 LINKELLSKFKKGAWLVNTARGAI  261 (364)
T ss_dssp             CBCHHHHTTSCTTEEEEECSCGGG
T ss_pred             HhCHHHHhhCCCCCEEEECCCCch
Confidence            5654   35789999999997654

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=97.97  E-value=5.2e-05  Score=71.96  Aligned_cols=172  Identities=15%  Similarity=0.210  Sum_probs=121.0

Q ss_pred             hHHHHHHHHHHHHHc-CCeEEEEEcCCCC-----CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccc--
Q 024306           22 SQTYVRNKIKACEEV-GIKSIVTEFADGC-----TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEK--   93 (269)
Q Consensus        22 s~~y~~~~~~~~~~~-Gi~~~~~~~~~~~-----~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~k--   93 (269)
                      +.--...|.-.|..+ ||++.-++++...     +.+++.+.++.+.  |++.||+.     +.+...+-+..++-.+  
T Consensus       113 gmpImeGKl~Lyk~~aGId~lPI~LD~gt~~~~~d~defve~v~~~~--P~fG~Inl-----EDf~ap~af~il~ryr~~  185 (487)
T 3nv9_A          113 GLGVMEGKALLMKYLGGIDAVPICIDSKNKEGKNDPDAVIEFVQRIQ--HTFGAINL-----EDISQPNCYKILDVLRES  185 (487)
T ss_dssp             GHHHHHHHHHHHHHHHCCEEEEEECCCBCTTSCBCHHHHHHHHHHHG--GGCSEEEE-----CSCCTTHHHHHHHHHHHH
T ss_pred             CCchhhhHHHHHHhcCCCceeeeEEeCCCccccCCHHHHHHHHHHhC--CCCCeecH-----hhcCCchHHHHHHHHHhh
Confidence            444455677777665 7998888886531     3799999999886  67889877     5444333333222211  


Q ss_pred             -cccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCC
Q 024306           94 -DVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHAL  169 (269)
Q Consensus        94 -dvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~  169 (269)
                       ++-.+|.-          ..+---.+..|++..++-.+.++++.++++.|+|-+ |..++.+|...|.   ++++|+++
T Consensus       186 ~~ipvFnDD----------~qGTA~V~lAgllnAlki~gk~l~d~riV~~GAGaA-Gigia~ll~~~G~~~~~i~l~D~~  254 (487)
T 3nv9_A          186 CDIPVWHDD----------QQGTASVTLAGLLNALKLVKKDIHECRMVFIGAGSS-NTTCLRLIVTAGADPKKIVMFDSK  254 (487)
T ss_dssp             CSSCEEETT----------THHHHHHHHHHHHHHHHHHTCCGGGCCEEEECCSHH-HHHHHHHHHHTTCCGGGEEEEETT
T ss_pred             ccCCccccc----------cchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHcCCCcccEEEEecc
Confidence             22222211          112112245778899999999999999999999998 9999999999998   59999654


Q ss_pred             ------------------------------CCCHhhhcCCCCEEEeccCC-CCcccCCCcC---CCcEEEEeeecCC
Q 024306          170 ------------------------------TKNPEQITSEADIVIAAAGV-ANLVRGSWLK---PGAVVLDVGTCPV  212 (269)
Q Consensus       170 ------------------------------t~~l~~~~~~aDiVIsAtg~-p~~i~~~~~~---~g~vViDv~~~~~  212 (269)
                                                    ..+|.+.++.+|++|-.... |+.+++++++   +.-+|+-++ ||.
T Consensus       255 Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S~~~pg~ft~e~V~~Ma~~PIIFaLS-NPt  330 (487)
T 3nv9_A          255 GSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLSTPGPGVVKAEWIKSMGEKPIVFCCA-NPV  330 (487)
T ss_dssp             EECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECCCSSCCCCCHHHHHTSCSSCEEEECC-SSS
T ss_pred             ccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEecccCCCCCCHHHHHhhcCCCEEEECC-CCC
Confidence                                          12466788999999976643 8899999876   467888887 664

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=97.96  E-value=7.5e-05  Score=72.40  Aligned_cols=136  Identities=20%  Similarity=0.206  Sum_probs=91.1

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCCEEEeccCCC----Cccc
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGVA----NLVR  194 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~aDiVIsAtg~p----~~i~  194 (269)
                      +.++.|+++.|||.|.+ |+++|..|...|++|+.+++..            .++.+.+++||+|+.+++..    +++.
T Consensus       137 ~~~l~g~~vgIIG~G~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~  215 (529)
T 1ygy_A          137 GTEIFGKTVGVVGLGRI-GQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLID  215 (529)
T ss_dssp             BCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBC
T ss_pred             ccccCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEECCCCChhHHHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhC
Confidence            35789999999999997 9999999999999999998753            14567788999999999843    3454


Q ss_pred             C---CCcCCCcEEEEeeecCCCCCCC----CCCceee---ccc-------chHHHhhHcceecccCCcccHHHHHHHHHH
Q 024306          195 G---SWLKPGAVVLDVGTCPVDDPSC----EYGYRLM---GDV-------CYEEAMRLASVITPVPGGVGPMTVAMLLSN  257 (269)
Q Consensus       195 ~---~~~~~g~vViDv~~~~~~~~~~----~~~~~l~---GDv-------d~~~~~~~~~~~tpvpgGvGp~T~~mLl~n  257 (269)
                      .   ..++++++++|++.....+...    ...+++.   -||       |..-+.-..-.+||..+|.-+-+...+..+
T Consensus       216 ~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~~~  295 (529)
T 1ygy_A          216 KEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGTD  295 (529)
T ss_dssp             HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHHHH
Confidence            4   3578999999999544322100    0000111   122       111112233458999998877776666666


Q ss_pred             HHHHHHHHhC
Q 024306          258 TLDSAKRAYG  267 (269)
Q Consensus       258 ~v~a~~~~~~  267 (269)
                      .++.+..|++
T Consensus       296 ~~~~l~~~l~  305 (529)
T 1ygy_A          296 VAESVRLALA  305 (529)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHc
Confidence            6666666654

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=97.95  E-value=1.2e-05  Score=73.70  Aligned_cols=134  Identities=16%  Similarity=0.203  Sum_probs=89.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------CHhhhcCCCCEEEeccCC----CCcccCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------NPEQITSEADIVIAAAGV----ANLVRGS  196 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------~l~~~~~~aDiVIsAtg~----p~~i~~~  196 (269)
                      .++.|+++.|||.|.+ |+++|+.|...|++|++++++..           ++.+.+++||+|+.+++.    .+++..+
T Consensus       142 ~~l~g~~vgIiG~G~I-G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~  220 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHI-GQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDE  220 (333)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHH
T ss_pred             ccCCCCEEEEEccCHH-HHHHHHHHHHCCCEEEEECCCcchhHHhhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHH
Confidence            4689999999999997 99999999999999999987532           567788899999999983    2345443


Q ss_pred             ---CcCCCcEEEEeeecCCCCCCCC----CCceee---cccchH---------------------HHhhHcceecccCCc
Q 024306          197 ---WLKPGAVVLDVGTCPVDDPSCE----YGYRLM---GDVCYE---------------------EAMRLASVITPVPGG  245 (269)
Q Consensus       197 ---~~~~g~vViDv~~~~~~~~~~~----~~~~l~---GDvd~~---------------------~~~~~~~~~tpvpgG  245 (269)
                         .+++++++||++.....+....    ..+++-   =||-..                     -..-..-.+||-.+|
T Consensus       221 ~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilTPHia~  300 (333)
T 1j4a_A          221 SIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  300 (333)
T ss_dssp             HHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             HHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEECCcccc
Confidence               4689999999987643221000    000111   122110                     111124578998898


Q ss_pred             ccHHHHHHHHHHHHHHHHHHh
Q 024306          246 VGPMTVAMLLSNTLDSAKRAY  266 (269)
Q Consensus       246 vGp~T~~mLl~n~v~a~~~~~  266 (269)
                      .-.-+..-+....++..++|+
T Consensus       301 ~t~~~~~~~~~~~~~nl~~~~  321 (333)
T 1j4a_A          301 YTTHAVRNMVVKAFDNNLELV  321 (333)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHH
Confidence            876666666666666666554

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.94  E-value=1.3e-05  Score=73.45  Aligned_cols=133  Identities=20%  Similarity=0.247  Sum_probs=87.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCCEEEeccCC----CCcccCC--
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV----ANLVRGS--  196 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~aDiVIsAtg~----p~~i~~~--  196 (269)
                      .++.|+++.|||.|.+ |+++|+.|...|++|++++++.         .++.+.+++||+|+.+++.    .+++..+  
T Consensus       160 ~~l~g~~vgIIG~G~i-G~~vA~~l~~~G~~V~~~dr~~~~~~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l  238 (333)
T 3ba1_A          160 TKFSGKRVGIIGLGRI-GLAVAERAEAFDCPISYFSRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVI  238 (333)
T ss_dssp             CCCTTCCEEEECCSHH-HHHHHHHHHTTTCCEEEECSSCCTTCCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHH
T ss_pred             cccCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCCchhccCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHH
Confidence            5789999999999997 9999999999999999998753         2567788999999999984    2345443  


Q ss_pred             -CcCCCcEEEEeeecCCCCCCCC----CCcee---ecccch------HHHhh-HcceecccCCcccHHHHHHHHHHHHHH
Q 024306          197 -WLKPGAVVLDVGTCPVDDPSCE----YGYRL---MGDVCY------EEAMR-LASVITPVPGGVGPMTVAMLLSNTLDS  261 (269)
Q Consensus       197 -~~~~g~vViDv~~~~~~~~~~~----~~~~l---~GDvd~------~~~~~-~~~~~tpvpgGvGp~T~~mLl~n~v~a  261 (269)
                       .+++++++||++.....+....    ..+++   .=||-.      ..+.+ ..-.+||-.+|.-.-+..-+....++.
T Consensus       239 ~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~~~~~~~n  318 (333)
T 3ba1_A          239 DALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGN  318 (333)
T ss_dssp             HHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEEECSSCTTCSHHHHHHHHHHHHHH
T ss_pred             hcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCcchhhcCCCEEECCcCCCCCHHHHHHHHHHHHHH
Confidence             3688999999986643220000    00011   113311      11111 233678877887655555555555555


Q ss_pred             HHHH
Q 024306          262 AKRA  265 (269)
Q Consensus       262 ~~~~  265 (269)
                      .++|
T Consensus       319 l~~~  322 (333)
T 3ba1_A          319 LEAH  322 (333)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=97.92  E-value=7.2e-05  Score=68.53  Aligned_cols=133  Identities=17%  Similarity=0.186  Sum_probs=91.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------CCHhhhcCCCCEEEeccCC----CCcccCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------KNPEQITSEADIVIAAAGV----ANLVRGS  196 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------~~l~~~~~~aDiVIsAtg~----p~~i~~~  196 (269)
                      .++.||++.|||.|.+ |+.+++.+...|++|...++..           .++.+.+++||+|+..++.    .++|+.+
T Consensus       137 ~~l~g~tvGIiG~G~I-G~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~  215 (334)
T 3kb6_A          137 RELNRLTLGVIGTGRI-GSRVAMYGLAFGMKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEE  215 (334)
T ss_dssp             CCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHH
T ss_pred             ceecCcEEEEECcchH-HHHHHHhhcccCceeeecCCccchhhhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHH
Confidence            5688999999999997 9999999999999999887653           2577889999999988883    3467766


Q ss_pred             C---cCCCcEEEEeeecCCCCCCC----CCCceeec---ccchHH-H----------------------hhHcceecccC
Q 024306          197 W---LKPGAVVLDVGTCPVDDPSC----EYGYRLMG---DVCYEE-A----------------------MRLASVITPVP  243 (269)
Q Consensus       197 ~---~~~g~vViDv~~~~~~~~~~----~~~~~l~G---Dvd~~~-~----------------------~~~~~~~tpvp  243 (269)
                      .   +|+|+++|.++.-...+...    ...+++.|   ||-..+ .                      .-..-.+||-.
T Consensus       216 ~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHi  295 (334)
T 3kb6_A          216 RISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHI  295 (334)
T ss_dssp             HHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEECCSC
T ss_pred             HHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEEECCch
Confidence            4   68999999999776543210    00124444   653211 0                      00133689998


Q ss_pred             CcccHHHHHHHHHHHHHHHHHH
Q 024306          244 GGVGPMTVAMLLSNTLDSAKRA  265 (269)
Q Consensus       244 gGvGp~T~~mLl~n~v~a~~~~  265 (269)
                      ||.-.-+..-+.++.++..++|
T Consensus       296 a~~T~ea~~~~~~~~~~ni~~~  317 (334)
T 3kb6_A          296 AYYTDKSLERIREETVKVVKAF  317 (334)
T ss_dssp             TTCBHHHHHHHHHHHHHHHHHH
T ss_pred             hhChHHHHHHHHHHHHHHHHHH
Confidence            9886555555555555555544

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.88  E-value=1.7e-05  Score=72.39  Aligned_cols=80  Identities=15%  Similarity=0.246  Sum_probs=64.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------CHhhhcCCCCEEEeccCCC----Cccc
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVIAAAGVA----NLVR  194 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~~~aDiVIsAtg~p----~~i~  194 (269)
                      .++.|+++.|||.|.+ |++++..|...|.+|++++++..             ++.+.+++||+||.+++..    +++.
T Consensus       151 ~~l~g~~vgIIG~G~i-G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~~t~~~i~  229 (330)
T 2gcg_A          151 YGLTQSTVGIIGLGRI-GQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCN  229 (330)
T ss_dssp             CCCTTCEEEEECCSHH-HHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBS
T ss_pred             cCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHhhCCEEEEeCCCChHHHHhhC
Confidence            4688999999999886 99999999999999999986532             4566788999999999842    3454


Q ss_pred             C---CCcCCCcEEEEeeecCC
Q 024306          195 G---SWLKPGAVVLDVGTCPV  212 (269)
Q Consensus       195 ~---~~~~~g~vViDv~~~~~  212 (269)
                      .   ..+++++++||++....
T Consensus       230 ~~~~~~mk~gailIn~srg~~  250 (330)
T 2gcg_A          230 KDFFQKMKETAVFINISRGDV  250 (330)
T ss_dssp             HHHHHHSCTTCEEEECSCGGG
T ss_pred             HHHHhcCCCCcEEEECCCCcc
Confidence            2   24688999999987543

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.86  E-value=1.1e-05  Score=74.61  Aligned_cols=78  Identities=27%  Similarity=0.379  Sum_probs=57.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcCCCCEEEeccCCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGVAN  191 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~aDiVIsAtg~p~  191 (269)
                      .+++++|+|+|+|++ |+.+++.|...|++|++++++..                     ++.+.++++|+||+++|.+.
T Consensus       163 ~l~~~~V~ViGaG~i-G~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~  241 (369)
T 2eez_A          163 GVAPASVVILGGGTV-GTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPG  241 (369)
T ss_dssp             BBCCCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC---
T ss_pred             CCCCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCc
Confidence            378999999999775 99999999999999999987521                     12345678999999998542


Q ss_pred             -----cccCC---CcCCCcEEEEeeecC
Q 024306          192 -----LVRGS---WLKPGAVVLDVGTCP  211 (269)
Q Consensus       192 -----~i~~~---~~~~g~vViDv~~~~  211 (269)
                           ++..+   .++++.+++|++...
T Consensus       242 ~~~~~li~~~~l~~mk~gg~iV~v~~~~  269 (369)
T 2eez_A          242 AKAPKLVTRDMLSLMKEGAVIVDVAVDQ  269 (369)
T ss_dssp             ----CCSCHHHHTTSCTTCEEEECC---
T ss_pred             cccchhHHHHHHHhhcCCCEEEEEecCC
Confidence                 34433   457899999999754

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=97.83  E-value=2.7e-05  Score=71.24  Aligned_cols=133  Identities=17%  Similarity=0.187  Sum_probs=87.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------CHhhhcCCCCEEEeccCCC----CcccC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGVA----NLVRG  195 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------~l~~~~~~aDiVIsAtg~p----~~i~~  195 (269)
                      .++.|+++.|||.|.+ |+++|+.|...|++|++++++..            ++.+.+++||+|+.+++..    +++..
T Consensus       142 ~~l~g~~vgIIG~G~i-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i~~  220 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAI-GKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINE  220 (333)
T ss_dssp             CCSTTCEEEEECCSHH-HHHHHHHHGGGTCEEEEECSSCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCCTTTTTSBCH
T ss_pred             CCCCcCEEEEEccCHH-HHHHHHHHHHCCCEEEEECCCcchhhhhhcCceecCHHHHHhhCCEEEEcCCCChHHHHHhCH
Confidence            5799999999999997 99999999999999999987642            4556788999999999853    34553


Q ss_pred             ---CCcCCCcEEEEeeecCCCCCCC----CCCceee---cccc-------hHHHhhH-cceecccCCcccHHHHHHHHHH
Q 024306          196 ---SWLKPGAVVLDVGTCPVDDPSC----EYGYRLM---GDVC-------YEEAMRL-ASVITPVPGGVGPMTVAMLLSN  257 (269)
Q Consensus       196 ---~~~~~g~vViDv~~~~~~~~~~----~~~~~l~---GDvd-------~~~~~~~-~~~~tpvpgGvGp~T~~mLl~n  257 (269)
                         ..++++ ++||++.....+...    ...+++-   -||-       ..-+.-. .-.+||-.+|.-.-+..-+...
T Consensus       221 ~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~~~~~~~~~  299 (333)
T 2d0i_A          221 ERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFR  299 (333)
T ss_dssp             HHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHHHHHHHHHH
T ss_pred             HHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHHHHHHHHHH
Confidence               346889 999998654432100    0000111   1221       1111112 3567888888766666555555


Q ss_pred             HHHHHHHHh
Q 024306          258 TLDSAKRAY  266 (269)
Q Consensus       258 ~v~a~~~~~  266 (269)
                      .++..++++
T Consensus       300 ~~~n~~~~~  308 (333)
T 2d0i_A          300 AVENLLKVL  308 (333)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555543

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.78  E-value=1.6e-05  Score=73.15  Aligned_cols=115  Identities=20%  Similarity=0.251  Sum_probs=74.1

Q ss_pred             CCccc--eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------CCHhhhcCCCCEEEeccCCC
Q 024306          133 EIMGK--NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------KNPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       133 ~l~gk--~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------~~l~~~~~~aDiVIsAtg~p  190 (269)
                      +++|+  ||+|+|+|.+ |++++..|++ ..+|+++.+..                    ..+.+.++++|+|||++|..
T Consensus        11 ~~~g~~mkilvlGaG~v-G~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~   88 (365)
T 3abi_A           11 HIEGRHMKVLILGAGNI-GRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF   88 (365)
T ss_dssp             -----CCEEEEECCSHH-HHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred             cccCCccEEEEECCCHH-HHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence            34444  6999999775 9999999875 46898886541                    23567789999999999842


Q ss_pred             -Cc-ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccC-CcccHHHHHHHHHHHHHHH
Q 024306          191 -NL-VRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVP-GGVGPMTVAMLLSNTLDSA  262 (269)
Q Consensus       191 -~~-i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvp-gGvGp~T~~mLl~n~v~a~  262 (269)
                       +. +-...++.|.-++|+.+.+.+.       +-+     .+.+++++... ++ =|+-|=-..||...+++.+
T Consensus        89 ~~~~v~~~~~~~g~~yvD~s~~~~~~-------~~l-----~~~a~~~g~~~-i~~~G~~PG~~~~~a~~~~~~~  150 (365)
T 3abi_A           89 LGFKSIKAAIKSKVDMVDVSFMPENP-------LEL-----RDEAEKAQVTI-VFDAGFAPGLSNILMGRIFQEL  150 (365)
T ss_dssp             GHHHHHHHHHHHTCEEEECCCCSSCG-------GGG-----HHHHHHTTCEE-ECCCBTTTBHHHHHHHHHHHHS
T ss_pred             ccchHHHHHHhcCcceEeeeccchhh-------hhh-----hhhhccCCcee-eecCCCCCchHHHHHHHHHHhc
Confidence             22 4445677799999999765322       111     24455555422 22 3566666778877666543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=97.78  E-value=4e-05  Score=71.98  Aligned_cols=82  Identities=20%  Similarity=0.296  Sum_probs=67.5

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------CCHhhhcCCCCEEEeccCC-C---CcccCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------KNPEQITSEADIVIAAAGV-A---NLVRGS  196 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------~~l~~~~~~aDiVIsAtg~-p---~~i~~~  196 (269)
                      +.++.||++.|||.|.+ |+.+|+.|...|++|+.+++..          .++.+.+++||+|+..++. +   +++..+
T Consensus       140 ~~el~gktlGiIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  218 (404)
T 1sc6_A          140 SFEARGKKLGIIGYGHI-GTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAK  218 (404)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHH
T ss_pred             ccccCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEEcCCchhccCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHH
Confidence            46799999999999997 9999999999999999998642          2577889999999999984 2   356544


Q ss_pred             ---CcCCCcEEEEeeecCCC
Q 024306          197 ---WLKPGAVVLDVGTCPVD  213 (269)
Q Consensus       197 ---~~~~g~vViDv~~~~~~  213 (269)
                         .+|+|+++||++.....
T Consensus       219 ~l~~mk~ga~lIN~aRg~~v  238 (404)
T 1sc6_A          219 EISLMKPGSLLINASRGTVV  238 (404)
T ss_dssp             HHHHSCTTEEEEECSCSSSB
T ss_pred             HHhhcCCCeEEEECCCChHH
Confidence               46899999999976543

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.73  E-value=1.3e-05  Score=69.73  Aligned_cols=79  Identities=19%  Similarity=0.263  Sum_probs=56.1

Q ss_pred             HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC-----------------------------HhhhcC
Q 024306          128 IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-----------------------------PEQITS  178 (269)
Q Consensus       128 ~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~-----------------------------l~~~~~  178 (269)
                      ++...++.+++|.|||.|.+ |.+++..|.+.|.+|++++|+...                             ..+.++
T Consensus        11 ~~~~~~~~~~kIgiIG~G~m-G~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~   89 (245)
T 3dtt_A           11 HHENLYFQGMKIAVLGTGTV-GRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAA   89 (245)
T ss_dssp             --------CCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHH
T ss_pred             cccccccCCCeEEEECCCHH-HHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHh
Confidence            34556789999999999987 999999999999999999876322                             234567


Q ss_pred             CCCEEEeccCCCCc---cc---CCCcCCCcEEEEee
Q 024306          179 EADIVIAAAGVANL---VR---GSWLKPGAVVLDVG  208 (269)
Q Consensus       179 ~aDiVIsAtg~p~~---i~---~~~~~~g~vViDv~  208 (269)
                      +||+||.+++.+..   +.   ...+ ++.+|||+.
T Consensus        90 ~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           90 GAELVVNATEGASSIAALTAAGAENL-AGKILVDIA  124 (245)
T ss_dssp             HCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECC
T ss_pred             cCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECC
Confidence            89999999986432   21   2234 789999998

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.68  E-value=4.9e-05  Score=68.71  Aligned_cols=76  Identities=18%  Similarity=0.347  Sum_probs=60.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCCc----ccC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----VRG  195 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~~----i~~  195 (269)
                      .+.++|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+..    +..
T Consensus        29 ~~~~~I~iIG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~  107 (320)
T 4dll_A           29 PYARKITFLGTGSM-GLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA  107 (320)
T ss_dssp             CCCSEEEEECCTTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTT
T ss_pred             cCCCEEEEECccHH-HHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcc
Confidence            35679999999887 9999999999999999998762              3567788999999999986431    221


Q ss_pred             -C---CcCCCcEEEEeeec
Q 024306          196 -S---WLKPGAVVLDVGTC  210 (269)
Q Consensus       196 -~---~~~~g~vViDv~~~  210 (269)
                       +   .++++.+|||++..
T Consensus       108 ~~~~~~l~~~~~vi~~st~  126 (320)
T 4dll_A          108 QGVAAAMKPGSLFLDMASI  126 (320)
T ss_dssp             TCHHHHCCTTCEEEECSCC
T ss_pred             hhHHhhCCCCCEEEecCCC
Confidence             2   36789999999864

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.65  E-value=3.9e-05  Score=68.01  Aligned_cols=73  Identities=15%  Similarity=0.170  Sum_probs=57.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCC----cc-c-C-
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LV-R-G-  195 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~----~i-~-~-  195 (269)
                      ++|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+.    .+ . . 
T Consensus         2 ~~i~iIG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~   80 (287)
T 3pef_A            2 QKFGFIGLGIM-GSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHG   80 (287)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CEEEEEeecHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcch
Confidence            58999999886 9999999999999999998763              355677888999999998542    12 1 2 


Q ss_pred             --CCcCCCcEEEEeeec
Q 024306          196 --SWLKPGAVVLDVGTC  210 (269)
Q Consensus       196 --~~~~~g~vViDv~~~  210 (269)
                        ..++++.+|+|+...
T Consensus        81 l~~~l~~~~~vi~~st~   97 (287)
T 3pef_A           81 VLEGIGEGRGYVDMSTV   97 (287)
T ss_dssp             HHHHCCTTCEEEECSCC
T ss_pred             HhhcCCCCCEEEeCCCC
Confidence              236789999998753

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.64  E-value=2.6e-05  Score=58.81  Aligned_cols=73  Identities=22%  Similarity=0.229  Sum_probs=51.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCC---------------------CHhhhcCCCCEEEeccCCCC-
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK---------------------NPEQITSEADIVIAAAGVAN-  191 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~---------------------~l~~~~~~aDiVIsAtg~p~-  191 (269)
                      .+++++|+|+|+ +|+.++..|.++| .+|+++.++..                     ++.+.++++|+||+++|... 
T Consensus         4 ~~~~v~I~G~G~-iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~~   82 (118)
T 3ic5_A            4 MRWNICVVGAGK-IGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFLT   82 (118)
T ss_dssp             TCEEEEEECCSH-HHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGGH
T ss_pred             CcCeEEEECCCH-HHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchhh
Confidence            468999999966 5999999999999 78999987631                     23355678899998886321 


Q ss_pred             -cccCCCcCCCcEEEEee
Q 024306          192 -LVRGSWLKPGAVVLDVG  208 (269)
Q Consensus       192 -~i~~~~~~~g~vViDv~  208 (269)
                       .+-....+.|...+|+.
T Consensus        83 ~~~~~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           83 PIIAKAAKAAGAHYFDLT  100 (118)
T ss_dssp             HHHHHHHHHTTCEEECCC
T ss_pred             HHHHHHHHHhCCCEEEec
Confidence             12222345566666655

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.58  E-value=8.8e-05  Score=64.28  Aligned_cols=123  Identities=15%  Similarity=0.219  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhC--CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------CHhhhcCCC
Q 024306          121 KGCIELLIRSG--VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------NPEQITSEA  180 (269)
Q Consensus       121 ~g~~~~l~~~~--~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------~l~~~~~~a  180 (269)
                      .|-++.+..+.  ++++|++|+|||+|.+ |...+..|.+.||.|+++.....                  -..+.+..+
T Consensus        14 ~~~~~~~~~~Pifl~L~gk~VLVVGgG~v-a~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~a   92 (223)
T 3dfz_A           14 SGHIEGRHMYTVMLDLKGRSVLVVGGGTI-ATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNV   92 (223)
T ss_dssp             --------CCEEEECCTTCCEEEECCSHH-HHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSC
T ss_pred             cCcccccCccccEEEcCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCC
Confidence            44455555443  4789999999999986 99999999999999999865421                  012457889


Q ss_pred             CEEEeccCCCCc---ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHH---hhHcceecccCCcccHHHHHHH
Q 024306          181 DIVIAAAGVANL---VRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEA---MRLASVITPVPGGVGPMTVAML  254 (269)
Q Consensus       181 DiVIsAtg~p~~---i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~---~~~~~~~tpvpgGvGp~T~~mL  254 (269)
                      |+||.||+.+..   +... -+.+ +.+.++-+|...       .|.    +.++   .+..-+++  -||-+|..+..|
T Consensus        93 dLVIaAT~d~~~N~~I~~~-ak~g-i~VNvvD~p~~~-------~f~----~Paiv~rg~l~iaIS--T~G~sP~la~~i  157 (223)
T 3dfz_A           93 FFIVVATNDQAVNKFVKQH-IKND-QLVNMASSFSDG-------NIQ----IPAQFSRGRLSLAIS--TDGASPLLTKRI  157 (223)
T ss_dssp             SEEEECCCCTHHHHHHHHH-SCTT-CEEEC-----CC-------SEE----CCEEEEETTEEEEEE--CTTSCHHHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHH-HhCC-CEEEEeCCcccC-------eEE----EeeEEEeCCEEEEEE--CCCCCcHHHHHH
Confidence            999999997652   2221 1333 334555444211       111    1111   12233444  578888887776


Q ss_pred             HHHHH
Q 024306          255 LSNTL  259 (269)
Q Consensus       255 l~n~v  259 (269)
                      -+.+.
T Consensus       158 R~~ie  162 (223)
T 3dfz_A          158 KEDLS  162 (223)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.58  E-value=5.3e-05  Score=68.13  Aligned_cols=75  Identities=17%  Similarity=0.222  Sum_probs=59.6

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCC----cc-c-
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LV-R-  194 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~----~i-~-  194 (269)
                      +-++|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+.    .+ . 
T Consensus        20 ~m~~I~iIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~   98 (310)
T 3doj_A           20 HMMEVGFLGLGIM-GKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDK   98 (310)
T ss_dssp             CSCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHST
T ss_pred             cCCEEEEECccHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCc
Confidence            4478999999886 9999999999999999998863              356677888999999998653    12 1 


Q ss_pred             C---CCcCCCcEEEEeeec
Q 024306          195 G---SWLKPGAVVLDVGTC  210 (269)
Q Consensus       195 ~---~~~~~g~vViDv~~~  210 (269)
                      .   ..++++.+|+|+...
T Consensus        99 ~~l~~~l~~g~~vv~~st~  117 (310)
T 3doj_A           99 GGVLEQICEGKGYIDMSTV  117 (310)
T ss_dssp             TCGGGGCCTTCEEEECSCC
T ss_pred             hhhhhccCCCCEEEECCCC
Confidence            1   246789999998854

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.56  E-value=0.0001  Score=65.84  Aligned_cols=72  Identities=19%  Similarity=0.232  Sum_probs=57.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCCc----cc--CC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----VR--GS  196 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~~----i~--~~  196 (269)
                      ++|.|||.|.+ |.+++..|++.|.+|++++++.              .++.+.++ +|+||.+++.+..    +.  ..
T Consensus        16 ~~I~vIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~~l~~   93 (296)
T 3qha_A           16 LKLGYIGLGNM-GAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVVGELAG   93 (296)
T ss_dssp             CCEEEECCSTT-HHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHHHHHT
T ss_pred             CeEEEECcCHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHHHHHH
Confidence            68999999886 9999999999999999998764              25567777 9999999986431    11  23


Q ss_pred             CcCCCcEEEEeeec
Q 024306          197 WLKPGAVVLDVGTC  210 (269)
Q Consensus       197 ~~~~g~vViDv~~~  210 (269)
                      .++++.+|+|....
T Consensus        94 ~l~~g~ivv~~st~  107 (296)
T 3qha_A           94 HAKPGTVIAIHSTI  107 (296)
T ss_dssp             TCCTTCEEEECSCC
T ss_pred             hcCCCCEEEEeCCC
Confidence            56789999998754

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.55  E-value=4.1e-05  Score=72.79  Aligned_cols=74  Identities=16%  Similarity=0.176  Sum_probs=55.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------CHhhhcCCCCEEEeccCCC-
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------NPEQITSEADIVIAAAGVA-  190 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------~l~~~~~~aDiVIsAtg~p-  190 (269)
                      ++++|+|+|+|++ |++++..|++.|++|++++|+..                       ++.+.++++|+||+++|.. 
T Consensus         2 ~~k~VlViGaG~i-G~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~   80 (450)
T 1ff9_A            2 ATKSVLMLGSGFV-TRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTF   80 (450)
T ss_dssp             CCCEEEEECCSTT-HHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--C
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCcccc
Confidence            4789999998886 99999999999999999987520                       1235567899999999852 


Q ss_pred             Cc-ccCCCcCCCcEEEEeee
Q 024306          191 NL-VRGSWLKPGAVVLDVGT  209 (269)
Q Consensus       191 ~~-i~~~~~~~g~vViDv~~  209 (269)
                      +. +..+.++.|..++|..+
T Consensus        81 ~~~i~~a~l~~g~~vvd~~~  100 (450)
T 1ff9_A           81 HATVIKSAIRQKKHVVTTSY  100 (450)
T ss_dssp             HHHHHHHHHHHTCEEEESSC
T ss_pred             chHHHHHHHhCCCeEEEeec
Confidence            22 44456677788888764

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.51  E-value=5.6e-05  Score=66.97  Aligned_cols=73  Identities=19%  Similarity=0.234  Sum_probs=58.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCC----cc-c-C-
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LV-R-G-  195 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~----~i-~-~-  195 (269)
                      ++|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+.    .+ . . 
T Consensus         2 ~~I~iiG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~   80 (287)
T 3pdu_A            2 TTYGFLGLGIM-GGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANG   80 (287)
T ss_dssp             CCEEEECCSTT-HHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CeEEEEccCHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchh
Confidence            47999999886 9999999999999999998863              356677889999999998652    12 1 1 


Q ss_pred             --CCcCCCcEEEEeeec
Q 024306          196 --SWLKPGAVVLDVGTC  210 (269)
Q Consensus       196 --~~~~~g~vViDv~~~  210 (269)
                        +.++++.+|+|+...
T Consensus        81 l~~~l~~g~~vv~~st~   97 (287)
T 3pdu_A           81 VLEGIGGGRGYIDMSTV   97 (287)
T ss_dssp             GGGTCCTTCEEEECSCC
T ss_pred             hhhcccCCCEEEECCCC
Confidence              246789999998864

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.50  E-value=0.00022  Score=64.24  Aligned_cols=73  Identities=22%  Similarity=0.408  Sum_probs=59.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCC----c-ccC--
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----L-VRG--  195 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~----~-i~~--  195 (269)
                      |+|-+||-|.+ |.++|..|.+.|.+|++.+|+.              .++.+.++++|+||+..+.+.    . ...  
T Consensus         4 ~kIgfIGlG~M-G~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g   82 (300)
T 3obb_A            4 KQIAFIGLGHM-GAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG   82 (300)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSS
T ss_pred             CEEEEeeehHH-HHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhh
Confidence            58999999997 9999999999999999999873              467788999999999998533    1 122  


Q ss_pred             --CCcCCCcEEEEeeec
Q 024306          196 --SWLKPGAVVLDVGTC  210 (269)
Q Consensus       196 --~~~~~g~vViDv~~~  210 (269)
                        +.+++|.++||++..
T Consensus        83 ~~~~~~~g~iiId~sT~   99 (300)
T 3obb_A           83 LLAHIAPGTLVLECSTI   99 (300)
T ss_dssp             STTSCCC-CEEEECSCC
T ss_pred             hhhcCCCCCEEEECCCC
Confidence              245789999999865

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.48  E-value=9e-05  Score=66.28  Aligned_cols=74  Identities=14%  Similarity=0.167  Sum_probs=58.1

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------CCHhhhcCCCCEEEeccCCCC----cc-c-
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------KNPEQITSEADIVIAAAGVAN----LV-R-  194 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------~~l~~~~~~aDiVIsAtg~p~----~i-~-  194 (269)
                      .++|.|||.|.+ |.+++..|.+.|.+|++++++.               .++.+.++++|+||.+++.+.    .+ . 
T Consensus         7 ~~~I~iIG~G~m-G~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~   85 (303)
T 3g0o_A            7 DFHVGIVGLGSM-GMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGE   85 (303)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--
T ss_pred             CCeEEEECCCHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhCh
Confidence            467999999886 9999999999999999998762               245567789999999998642    12 1 


Q ss_pred             C---CCcCCCcEEEEeeec
Q 024306          195 G---SWLKPGAVVLDVGTC  210 (269)
Q Consensus       195 ~---~~~~~g~vViDv~~~  210 (269)
                      .   ..++++.+|+|++..
T Consensus        86 ~~l~~~l~~g~ivv~~st~  104 (303)
T 3g0o_A           86 DGVAHLMKPGSAVMVSSTI  104 (303)
T ss_dssp             CCCGGGSCTTCEEEECSCC
T ss_pred             hhHHhhCCCCCEEEecCCC
Confidence            1   246789999998754

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.46  E-value=8.7e-05  Score=66.64  Aligned_cols=78  Identities=15%  Similarity=0.104  Sum_probs=61.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCC----ccc
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVR  194 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~----~i~  194 (269)
                      ....++|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+.    .+.
T Consensus         6 ~~~~~~IgiIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~   84 (306)
T 3l6d_A            6 ESFEFDVSVIGLGAM-GTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG   84 (306)
T ss_dssp             CCCSCSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT
T ss_pred             ccCCCeEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc
Confidence            345688999999887 9999999999999999998762              356777889999999998643    232


Q ss_pred             CC---CcCCCcEEEEeeecC
Q 024306          195 GS---WLKPGAVVLDVGTCP  211 (269)
Q Consensus       195 ~~---~~~~g~vViDv~~~~  211 (269)
                      .+   .++++.+|||++...
T Consensus        85 ~~~l~~~~~g~ivid~st~~  104 (306)
T 3l6d_A           85 MPGVARALAHRTIVDYTTNA  104 (306)
T ss_dssp             STTHHHHTTTCEEEECCCCC
T ss_pred             ccchhhccCCCEEEECCCCC
Confidence            11   246789999987543

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.45  E-value=0.00021  Score=60.71  Aligned_cols=58  Identities=17%  Similarity=0.119  Sum_probs=43.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC--------------------HhhhcCCCCEEEeccCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN--------------------PEQITSEADIVIAAAGV  189 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~--------------------l~~~~~~aDiVIsAtg~  189 (269)
                      ..++|++|+|.|++|.+|+.++..|+++|++|+++.|+...                    +.+.+...|+||+..|.
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~   94 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGS   94 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCC
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCC
Confidence            45789999999998888999999999999999999876432                    23445667777777663

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.44  E-value=8.8e-05  Score=67.73  Aligned_cols=74  Identities=22%  Similarity=0.243  Sum_probs=57.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------CHhhhcCCCCEEEeccCCC---Cccc--
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------NPEQITSEADIVIAAAGVA---NLVR--  194 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------~l~~~~~~aDiVIsAtg~p---~~i~--  194 (269)
                      +++++|.|||.|.+ |.+++..|.+.|.+|++++++..              ++.+.+++||+||.+++..   ..+.  
T Consensus        14 l~~~~I~IIG~G~m-G~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~~e~~~~aDvVilavp~~~~~~v~~~~   92 (338)
T 1np3_A           14 IQGKKVAIIGYGSQ-GHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEFQGRLYKEE   92 (338)
T ss_dssp             HHTSCEEEECCSHH-HHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHHHHHHHHHH
T ss_pred             hcCCEEEEECchHH-HHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccHHHHHhcCCEEEEeCCcHHHHHHHHHH
Confidence            46789999999886 99999999999999999887642              3446678999999999842   2333  


Q ss_pred             -CCCcCCCcEEEEee
Q 024306          195 -GSWLKPGAVVLDVG  208 (269)
Q Consensus       195 -~~~~~~g~vViDv~  208 (269)
                       ...++++++|+|++
T Consensus        93 i~~~l~~~~ivi~~~  107 (338)
T 1np3_A           93 IEPNLKKGATLAFAH  107 (338)
T ss_dssp             TGGGCCTTCEEEESC
T ss_pred             HHhhCCCCCEEEEcC
Confidence             23578899999874

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.42  E-value=0.00021  Score=65.92  Aligned_cols=77  Identities=14%  Similarity=0.188  Sum_probs=59.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCC---CEEEeccCCCCc---c
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEA---DIVIAAAGVANL---V  193 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~a---DiVIsAtg~p~~---i  193 (269)
                      ++.++|.|||.|.+ |.+++..|++.|.+|++++++.              .++.+.++++   |+||.+++.+..   +
T Consensus        20 m~~mkIgiIGlG~m-G~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRM-GADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGGGHHHHH
T ss_pred             hcCCEEEEECchHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHHHHHHHH
Confidence            46789999999886 9999999999999999998862              3566777777   999999986531   1


Q ss_pred             c--CCCcCCCcEEEEeeecC
Q 024306          194 R--GSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       194 ~--~~~~~~g~vViDv~~~~  211 (269)
                      .  ...++++.+|||++...
T Consensus        99 ~~l~~~l~~g~iiId~st~~  118 (358)
T 4e21_A           99 QRMTPLLAANDIVIDGGNSH  118 (358)
T ss_dssp             HHHGGGCCTTCEEEECSSCC
T ss_pred             HHHHhhCCCCCEEEeCCCCC
Confidence            1  23467899999988543

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.38  E-value=0.00025  Score=65.76  Aligned_cols=93  Identities=16%  Similarity=0.168  Sum_probs=62.0

Q ss_pred             cCCHHHHH----HHHHH-hCC-CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH--------------hhh
Q 024306          117 PCTPKGCI----ELLIR-SGV-EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP--------------EQI  176 (269)
Q Consensus       117 p~t~~g~~----~~l~~-~~~-~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l--------------~~~  176 (269)
                      +.|+.|+.    +++++ .+. +++||+|+|+|.|.+ |..+|+.|.+.|++|++++++...+              .+.
T Consensus       148 ~aTg~GV~~~~~~~~~~~~G~~~L~GktV~V~G~G~V-G~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~l  226 (364)
T 1leh_A          148 PVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNV-AKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAI  226 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGT
T ss_pred             cchhhHHHHHHHHHHHhhccccCCCcCEEEEECchHH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHH
Confidence            45777754    44454 365 899999999999886 9999999999999999887653211              122


Q ss_pred             c-CCCCEEEeccCCCCcccCCCcC--CCcEEEEeeecC
Q 024306          177 T-SEADIVIAAAGVANLVRGSWLK--PGAVVLDVGTCP  211 (269)
Q Consensus       177 ~-~~aDiVIsAtg~p~~i~~~~~~--~g~vViDv~~~~  211 (269)
                      + .++||+|.+. ..+.++.+.++  ...+|+..+-.|
T Consensus       227 l~~~~DIvip~a-~~~~I~~~~~~~lg~~iV~e~An~p  263 (364)
T 1leh_A          227 YGVTCDIFAPCA-LGAVLNDFTIPQLKAKVIAGSADNQ  263 (364)
T ss_dssp             TTCCCSEEEECS-CSCCBSTTHHHHCCCSEECCSCSCC
T ss_pred             hccCCcEeeccc-hHHHhCHHHHHhCCCcEEEeCCCCC
Confidence            2 3789999764 33456555432  234454544333

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.37  E-value=0.00018  Score=64.58  Aligned_cols=73  Identities=15%  Similarity=0.182  Sum_probs=55.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCCc----ccC---
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL----VRG---  195 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~~----i~~---  195 (269)
                      +||-+||-|.+ |.++|..|.+.|.+|++++|+.              .++.+.++++|+||+.++.+.-    +..   
T Consensus         6 ~kIgfIGLG~M-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~   84 (297)
T 4gbj_A            6 EKIAFLGLGNL-GTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELV   84 (297)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHH
T ss_pred             CcEEEEecHHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHH
Confidence            57999999997 9999999999999999998763              3567888999999999886431    211   


Q ss_pred             CCcCCCcEEEEeeec
Q 024306          196 SWLKPGAVVLDVGTC  210 (269)
Q Consensus       196 ~~~~~g~vViDv~~~  210 (269)
                      ..++++.++||.+..
T Consensus        85 ~~~~~~~iiid~sT~   99 (297)
T 4gbj_A           85 EKLGKDGVHVSMSTI   99 (297)
T ss_dssp             HHHCTTCEEEECSCC
T ss_pred             hhcCCCeEEEECCCC
Confidence            135678888888754

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.37  E-value=0.00016  Score=64.67  Aligned_cols=73  Identities=19%  Similarity=0.270  Sum_probs=57.7

Q ss_pred             cceEEEEc-CCcccHHHHHHHHHhCCCEEEEEeCCCC-CHhhhcCCCCEEEeccCCCC---ccc--CCCcCCCcEEEEee
Q 024306          136 GKNAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALTK-NPEQITSEADIVIAAAGVAN---LVR--GSWLKPGAVVLDVG  208 (269)
Q Consensus       136 gk~v~ViG-~gg~vg~~~a~~L~~~ga~Vti~~~~t~-~l~~~~~~aDiVIsAtg~p~---~i~--~~~~~~g~vViDv~  208 (269)
                      .++|.||| .|.+ |.+++..|.+.|.+|+++++... +..+.+++||+||.+++...   .+.  ...++++++|+|++
T Consensus        21 ~~~I~iIGg~G~m-G~~la~~l~~~G~~V~~~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~~~l~~~~iv~~~~   99 (298)
T 2pv7_A           21 IHKIVIVGGYGKL-GGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTENMLLADLT   99 (298)
T ss_dssp             CCCEEEETTTSHH-HHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEECC
T ss_pred             CCEEEEEcCCCHH-HHHHHHHHHhCCCeEEEEECCcccCHHHHhcCCCEEEEeCCHHHHHHHHHHHHhhcCCCcEEEECC
Confidence            46899999 8776 99999999999999999987643 46678899999999998543   121  23467889999986


Q ss_pred             e
Q 024306          209 T  209 (269)
Q Consensus       209 ~  209 (269)
                      .
T Consensus       100 s  100 (298)
T 2pv7_A          100 S  100 (298)
T ss_dssp             S
T ss_pred             C
Confidence            4

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.36  E-value=0.00018  Score=64.99  Aligned_cols=72  Identities=17%  Similarity=0.106  Sum_probs=57.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC-------------------C-CHhhhcCCCCEEEeccCCCCc---
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT-------------------K-NPEQITSEADIVIAAAGVANL---  192 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t-------------------~-~l~~~~~~aDiVIsAtg~p~~---  192 (269)
                      ++|.|||.|.+ |.+++..|++.| .+|++++++.                   . ++.+.+++||+||.+++.+..   
T Consensus        25 m~IgvIG~G~m-G~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~~~~s~~e~~~~aDvVi~avp~~~~~~~  103 (317)
T 4ezb_A           25 TTIAFIGFGEA-AQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAGIACADVVLSLVVGAATKAV  103 (317)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTCEEESSGGGGGGCSEEEECCCGGGHHHH
T ss_pred             CeEEEECccHH-HHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCCCCCCHHHHHhcCCEEEEecCCHHHHHH
Confidence            68999999886 999999999999 8999998763                   1 456677889999999986432   


Q ss_pred             cc--CCCcCCCcEEEEeee
Q 024306          193 VR--GSWLKPGAVVLDVGT  209 (269)
Q Consensus       193 i~--~~~~~~g~vViDv~~  209 (269)
                      +.  ...++++.+|||+..
T Consensus       104 ~~~i~~~l~~~~ivv~~st  122 (317)
T 4ezb_A          104 AASAAPHLSDEAVFIDLNS  122 (317)
T ss_dssp             HHHHGGGCCTTCEEEECCS
T ss_pred             HHHHHhhcCCCCEEEECCC
Confidence            11  124678889999874

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.36  E-value=0.00019  Score=64.90  Aligned_cols=75  Identities=17%  Similarity=0.179  Sum_probs=58.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC----------------CCHhh-hcCCCCEEEeccCCCC---c
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT----------------KNPEQ-ITSEADIVIAAAGVAN---L  192 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t----------------~~l~~-~~~~aDiVIsAtg~p~---~  192 (269)
                      .-++|.|||.|.+ |.+++..|.+.|.  +|++++++.                .++.+ .+++||+||.+++...   .
T Consensus        32 ~~~kI~IIG~G~m-G~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~~~~v  110 (314)
T 3ggo_A           32 SMQNVLIVGVGFM-GGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREI  110 (314)
T ss_dssp             SCSEEEEESCSHH-HHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGGHHHH
T ss_pred             CCCEEEEEeeCHH-HHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHHHHHH
Confidence            3478999999886 9999999999998  899998752                24556 7889999999998532   1


Q ss_pred             cc--CCCcCCCcEEEEeeec
Q 024306          193 VR--GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       193 i~--~~~~~~g~vViDv~~~  210 (269)
                      +.  ...++++++|+|++..
T Consensus       111 l~~l~~~l~~~~iv~d~~Sv  130 (314)
T 3ggo_A          111 AKKLSYILSEDATVTDQGSV  130 (314)
T ss_dssp             HHHHHHHSCTTCEEEECCSC
T ss_pred             HHHHhhccCCCcEEEECCCC
Confidence            21  1246889999998753

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.35  E-value=0.0003  Score=59.62  Aligned_cols=74  Identities=22%  Similarity=0.338  Sum_probs=52.8

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhhcCCCCEEEeccCCCC---ccc--CCCcCCCcEE
Q 024306          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIAAAGVAN---LVR--GSWLKPGAVV  204 (269)
Q Consensus       130 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~aDiVIsAtg~p~---~i~--~~~~~~g~vV  204 (269)
                      .+..+..++|.|||+|.+ |.+++..|.+.|.+|++++++..    .+++||+||.+++.+.   .+.  ...++ ++++
T Consensus        13 ~~~~~~~~~I~iiG~G~m-G~~la~~l~~~g~~V~~~~~~~~----~~~~aD~vi~av~~~~~~~v~~~l~~~~~-~~~v   86 (209)
T 2raf_A           13 ENLYFQGMEITIFGKGNM-GQAIGHNFEIAGHEVTYYGSKDQ----ATTLGEIVIMAVPYPALAALAKQYATQLK-GKIV   86 (209)
T ss_dssp             -------CEEEEECCSHH-HHHHHHHHHHTTCEEEEECTTCC----CSSCCSEEEECSCHHHHHHHHHHTHHHHT-TSEE
T ss_pred             cccccCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEcCCHH----HhccCCEEEEcCCcHHHHHHHHHHHHhcC-CCEE
Confidence            356678899999999886 99999999999999999987643    6789999999998321   121  11345 8899


Q ss_pred             EEeee
Q 024306          205 LDVGT  209 (269)
Q Consensus       205 iDv~~  209 (269)
                      +|+..
T Consensus        87 i~~~~   91 (209)
T 2raf_A           87 VDITN   91 (209)
T ss_dssp             EECCC
T ss_pred             EEECC
Confidence            99864

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.31  E-value=0.0003  Score=63.33  Aligned_cols=74  Identities=18%  Similarity=0.266  Sum_probs=57.2

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC----------------CCHhhhcCCCCEEEeccCCCCc---cc-
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT----------------KNPEQITSEADIVIAAAGVANL---VR-  194 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t----------------~~l~~~~~~aDiVIsAtg~p~~---i~-  194 (269)
                      -++|.|||.|.+ |.+++..|.+.|. +|++++++.                .++.+.+++||+||.+++.+..   +. 
T Consensus        24 ~~~I~iIG~G~m-G~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~~~~  102 (312)
T 3qsg_A           24 AMKLGFIGFGEA-ASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALEVAQQ  102 (312)
T ss_dssp             -CEEEEECCSHH-HHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHHHHHH
T ss_pred             CCEEEEECccHH-HHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHHHHHh
Confidence            468999999887 9999999999999 999999851                3566778899999999986442   11 


Q ss_pred             -CCCcCCCcEEEEeeec
Q 024306          195 -GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       195 -~~~~~~g~vViDv~~~  210 (269)
                       ...++++.+|||+...
T Consensus       103 l~~~l~~~~ivvd~st~  119 (312)
T 3qsg_A          103 AGPHLCEGALYADFTSC  119 (312)
T ss_dssp             HGGGCCTTCEEEECCCC
T ss_pred             hHhhcCCCCEEEEcCCC
Confidence             1346678888887643

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.30  E-value=0.00017  Score=63.30  Aligned_cols=71  Identities=17%  Similarity=0.297  Sum_probs=54.6

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC-------------HhhhcCCCCEEEeccCCCC-c---cc--CCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-------------PEQITSEADIVIAAAGVAN-L---VR--GSW  197 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~-------------l~~~~~~aDiVIsAtg~p~-~---i~--~~~  197 (269)
                      ++|.|||.|.+ |.+++..|.+ |.+|++++++...             +.+.++++|+||.+++.+. .   +.  ...
T Consensus         2 ~~i~iiG~G~~-G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~D~vi~~v~~~~~~~~v~~~l~~~   79 (289)
T 2cvz_A            2 EKVAFIGLGAM-GYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPY   79 (289)
T ss_dssp             CCEEEECCSTT-HHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEcccHH-HHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccCHHHHHhCCCEEEEeCCChHHHHHHHHHHHhh
Confidence            36999999886 9999999999 9999999876321             3355778999999999653 1   21  245


Q ss_pred             cCCCcEEEEeee
Q 024306          198 LKPGAVVLDVGT  209 (269)
Q Consensus       198 ~~~g~vViDv~~  209 (269)
                      ++++.+|+|+..
T Consensus        80 l~~~~~vv~~s~   91 (289)
T 2cvz_A           80 LREGTYWVDATS   91 (289)
T ss_dssp             CCTTEEEEECSC
T ss_pred             CCCCCEEEECCC
Confidence            778999999864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.27  E-value=0.00024  Score=60.52  Aligned_cols=73  Identities=16%  Similarity=0.200  Sum_probs=54.8

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------CHhhhcCCCCEEEeccCCCC---ccc-CCCc
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVIAAAGVAN---LVR-GSWL  198 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~~~aDiVIsAtg~p~---~i~-~~~~  198 (269)
                      .+++.|||+|.+ |++++..|.+.|.+|++++|+..             ++.+.++++|+||.+++...   .+. ...+
T Consensus        28 ~~~I~iiG~G~~-G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~av~~~~~~~v~~l~~~~  106 (215)
T 2vns_A           28 APKVGILGSGDF-ARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVFREHYSSLCSLSDQL  106 (215)
T ss_dssp             -CCEEEECCSHH-HHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEECSCGGGSGGGGGGHHHH
T ss_pred             CCEEEEEccCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEECCChHHHHHHHHHHHhc
Confidence            468999998876 99999999999999999987632             34466789999999998422   221 1122


Q ss_pred             CCCcEEEEeeec
Q 024306          199 KPGAVVLDVGTC  210 (269)
Q Consensus       199 ~~g~vViDv~~~  210 (269)
                       ++++|+|+...
T Consensus       107 -~~~~vv~~s~g  117 (215)
T 2vns_A          107 -AGKILVDVSNP  117 (215)
T ss_dssp             -TTCEEEECCCC
T ss_pred             -CCCEEEEeCCC
Confidence             78999999854

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.25  E-value=0.00023  Score=63.75  Aligned_cols=71  Identities=24%  Similarity=0.362  Sum_probs=55.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCC----cccC---
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVRG---  195 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~----~i~~---  195 (269)
                      ++|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+.    .+..   
T Consensus        31 ~~I~iIG~G~m-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~  109 (316)
T 2uyy_A           31 KKIGFLGLGLM-GSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSG  109 (316)
T ss_dssp             SCEEEECCSHH-HHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CeEEEEcccHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchh
Confidence            67999999886 9999999999999999998753              244566778999999999533    2221   


Q ss_pred             --CCcCCCcEEEEee
Q 024306          196 --SWLKPGAVVLDVG  208 (269)
Q Consensus       196 --~~~~~g~vViDv~  208 (269)
                        +.++++.+|+|+.
T Consensus       110 ~~~~l~~~~~vv~~s  124 (316)
T 2uyy_A          110 VLQGIRPGKCYVDMS  124 (316)
T ss_dssp             GGGGCCTTCEEEECS
T ss_pred             HhhcCCCCCEEEECC
Confidence              4577899999986

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.20  E-value=0.00034  Score=61.77  Aligned_cols=70  Identities=23%  Similarity=0.366  Sum_probs=54.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCC----cccC----
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVRG----  195 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~----~i~~----  195 (269)
                      +|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+.    .+..    
T Consensus         2 ~i~iiG~G~m-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            2 PVGFIGLGNM-GNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CEEEECCSTT-HHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             eEEEEeccHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            6899999886 9999999999999999998763              245566788999999997643    2221    


Q ss_pred             -CCcCCCcEEEEee
Q 024306          196 -SWLKPGAVVLDVG  208 (269)
Q Consensus       196 -~~~~~g~vViDv~  208 (269)
                       ..++++.+|+|..
T Consensus        81 ~~~l~~~~~vv~~s   94 (296)
T 2gf2_A           81 LKKVKKGSLLIDSS   94 (296)
T ss_dssp             GGTCCTTCEEEECS
T ss_pred             HhcCCCCCEEEECC
Confidence             2467889999954

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.18  E-value=0.00033  Score=62.01  Aligned_cols=72  Identities=24%  Similarity=0.407  Sum_probs=56.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCC----ccc--C-
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVR--G-  195 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~----~i~--~-  195 (269)
                      .+|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+.    .+.  . 
T Consensus         5 ~~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~   83 (301)
T 3cky_A            5 IKIGFIGLGAM-GKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGG   83 (301)
T ss_dssp             CEEEEECCCTT-HHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             CEEEEECccHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcch
Confidence            57999999886 9999999999999999997752              245566788999999998643    232  1 


Q ss_pred             --CCcCCCcEEEEeee
Q 024306          196 --SWLKPGAVVLDVGT  209 (269)
Q Consensus       196 --~~~~~g~vViDv~~  209 (269)
                        ..++++.+|+|+..
T Consensus        84 l~~~l~~~~~vv~~~~   99 (301)
T 3cky_A           84 VLSACKAGTVIVDMSS   99 (301)
T ss_dssp             HHHHSCTTCEEEECCC
T ss_pred             HhhcCCCCCEEEECCC
Confidence              24678999999864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.18  E-value=0.00033  Score=61.97  Aligned_cols=72  Identities=19%  Similarity=0.296  Sum_probs=56.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCC----ccc--C-
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVR--G-  195 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~----~i~--~-  195 (269)
                      .+|.|||.|.+ |.+++..|.+.|.+|++++++.              .++.+.++++|+||.+++.+.    .+.  . 
T Consensus         6 m~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~   84 (299)
T 1vpd_A            6 MKVGFIGLGIM-GKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENG   84 (299)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTC
T ss_pred             ceEEEECchHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcch
Confidence            37999999886 9999999999999999997752              345566788999999998543    231  1 


Q ss_pred             --CCcCCCcEEEEeee
Q 024306          196 --SWLKPGAVVLDVGT  209 (269)
Q Consensus       196 --~~~~~g~vViDv~~  209 (269)
                        ..++++.+|+|+..
T Consensus        85 l~~~l~~~~~vv~~s~  100 (299)
T 1vpd_A           85 IIEGAKPGTVLIDMSS  100 (299)
T ss_dssp             HHHHCCTTCEEEECSC
T ss_pred             HhhcCCCCCEEEECCC
Confidence              24678999999864

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.13  E-value=0.00061  Score=57.81  Aligned_cols=56  Identities=13%  Similarity=0.145  Sum_probs=46.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCCC---------------------CHhhhcCCCCEEEeccCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALTK---------------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t~---------------------~l~~~~~~aDiVIsAtg~  189 (269)
                      +++|+++|.|++|-+|+.++..|+++|+  +|+++.|...                     ++.+.++..|+||+..|.
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~   94 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   94 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCc
Confidence            5689999999988889999999999999  9999877531                     234556788999998884

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.12  E-value=0.00033  Score=61.02  Aligned_cols=75  Identities=16%  Similarity=0.179  Sum_probs=56.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCCC---------------CCHhhhcCCCCEEEeccCCCC---ccc
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT---------------KNPEQITSEADIVIAAAGVAN---LVR  194 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t---------------~~l~~~~~~aDiVIsAtg~p~---~i~  194 (269)
                      +.+.+|.|||.|.+ |..++..|.+.|.+ |++++++.               .++.+.++++|+||.+++...   .+.
T Consensus         8 ~~~m~i~iiG~G~m-G~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~~~~~v~~   86 (266)
T 3d1l_A            8 IEDTPIVLIGAGNL-ATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSAFAELLQ   86 (266)
T ss_dssp             GGGCCEEEECCSHH-HHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHHHHHHHHH
T ss_pred             CCCCeEEEEcCCHH-HHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHHHHHHHHH
Confidence            45678999999886 99999999999988 88887752               245566789999999998432   121


Q ss_pred             --CCCcCCCcEEEEeee
Q 024306          195 --GSWLKPGAVVLDVGT  209 (269)
Q Consensus       195 --~~~~~~g~vViDv~~  209 (269)
                        ...++++++|+|+..
T Consensus        87 ~l~~~~~~~~ivv~~s~  103 (266)
T 3d1l_A           87 GIVEGKREEALMVHTAG  103 (266)
T ss_dssp             HHHTTCCTTCEEEECCT
T ss_pred             HHHhhcCCCcEEEECCC
Confidence              124668889999863

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=96.17  E-value=7.7e-05  Score=63.26  Aligned_cols=76  Identities=16%  Similarity=0.155  Sum_probs=55.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------CHhhhcCCCCEEEeccCCCC---cccCCCc
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------NPEQITSEADIVIAAAGVAN---LVRGSWL  198 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------~l~~~~~~aDiVIsAtg~p~---~i~~~~~  198 (269)
                      +.++++.|||.|.+ |.+++..|.+.|.+|++++|+..            ++.+.++++|+||.+++...   .+.-...
T Consensus        17 ~~~~~I~iIG~G~m-G~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~aDvVilav~~~~~~~v~~l~~~   95 (201)
T 2yjz_A           17 EKQGVVCIFGTGDF-GKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVLAVHREHYDFLAELADS   95 (201)
Confidence            46678999999886 99999999999988998876532            23355778999999998532   2211113


Q ss_pred             CCCcEEEEeeec
Q 024306          199 KPGAVVLDVGTC  210 (269)
Q Consensus       199 ~~g~vViDv~~~  210 (269)
                      .++.+|||+...
T Consensus        96 ~~~~ivI~~~~G  107 (201)
T 2yjz_A           96 LKGRVLIDVSNN  107 (201)
Confidence            468899998743

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=97.09  E-value=0.0054  Score=55.03  Aligned_cols=144  Identities=15%  Similarity=0.168  Sum_probs=101.6

Q ss_pred             HHHHHHHHHcCCeEEEEEcCCCC--CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHH-HHhcCCcccccccccccee
Q 024306           27 RNKIKACEEVGIKSIVTEFADGC--TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK-ILDAVSLEKDVDGFHPLNI  103 (269)
Q Consensus        27 ~~~~~~~~~~Gi~~~~~~~~~~~--~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~-i~~~i~p~kdvdg~~~~n~  103 (269)
                      -+-..+++++|.++.++.-....  .-|-+.+.++-|+. -.+|+|.+--|-...+  .. +.+..       .+-.+|.
T Consensus        50 ~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~-~~~D~iviR~~~~~~~--~~~la~~~-------~vPVINA  119 (291)
T 3d6n_B           50 LSFEKAARELGIETYLVSGSESSTVKGESFFDTLKTFEG-LGFDYVVFRVPFVFFP--YKEIVKSL-------NLRLVNA  119 (291)
T ss_dssp             HHHHHHHHHTTCEEEEEETTTTSCCTTCCHHHHHHHHHH-TTCSEEEEEESSCCCS--CHHHHHTC-------SSEEEEE
T ss_pred             HHHHHHHHHhCCeEEEECCccCcccCCCcHHHHHHHHHH-hcCCEEEEEcCChHHH--HHHHHHhC-------CCCEEeC
Confidence            34567899999999988643211  13457778887777 3468999998866544  33 33322       1234453


Q ss_pred             cccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcC--CcccHHHHHHHHHhCCCEEEEEeCC-----------
Q 024306          104 GNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGR--SNIVGLPTSLLLQRHHATVSIVHAL-----------  169 (269)
Q Consensus       104 g~l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~--gg~vg~~~a~~L~~~ga~Vti~~~~-----------  169 (269)
                      |      ..+.+.||=+.+ ++.+.++. ..++|.+|+++|-  ++.|++.++..+...|++|+++...           
T Consensus       120 G------~g~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g  192 (291)
T 3d6n_B          120 G------DGTHQHPSQGLIDFFTIKEHF-GEVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFK  192 (291)
T ss_dssp             E------ETTTBCHHHHHHHHHHHHHHH-SCCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGC
T ss_pred             c------cCCCcCcHHHHHHHHHHHHHh-CCcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCC
Confidence            2      234566888877 44444544 4799999999998  7778999999999999999999643           


Q ss_pred             ---CCCHhhhcCCCCEEEeccC
Q 024306          170 ---TKNPEQITSEADIVIAAAG  188 (269)
Q Consensus       170 ---t~~l~~~~~~aDiVIsAtg  188 (269)
                         +.++.+.+++||+|.+ +-
T Consensus       193 ~~~~~d~~eav~~aDvvy~-~~  213 (291)
T 3d6n_B          193 VDVFDDVDKGIDWADVVIW-LR  213 (291)
T ss_dssp             EEEESSHHHHHHHCSEEEE-CC
T ss_pred             CEEEcCHHHHhCCCCEEEE-eC
Confidence               2457788999999998 54

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=97.08  E-value=0.0017  Score=56.33  Aligned_cols=79  Identities=18%  Similarity=0.264  Sum_probs=54.6

Q ss_pred             CCccceEEEEcCC----------------cccHHHHHHHHHhCCCEEEEEeCCCC-------------C-------Hhhh
Q 024306          133 EIMGKNAVVIGRS----------------NIVGLPTSLLLQRHHATVSIVHALTK-------------N-------PEQI  176 (269)
Q Consensus       133 ~l~gk~v~ViG~g----------------g~vg~~~a~~L~~~ga~Vti~~~~t~-------------~-------l~~~  176 (269)
                      +++||+|+|-|+|                |-+|+++|..|+.+||+|+++++...             +       ..+.
T Consensus         5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l~~~~g~~~~dv~~~~~~~~~v~~~   84 (226)
T 1u7z_A            5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNAS   84 (226)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcccccCCCCeEEccCcHHHHHHHHHHh
Confidence            4789999999992                43499999999999999999865421             1       1133


Q ss_pred             cCCCCEEEeccCCCCc----ccCCCcCC---C--cEEEEeeecC
Q 024306          177 TSEADIVIAAAGVANL----VRGSWLKP---G--AVVLDVGTCP  211 (269)
Q Consensus       177 ~~~aDiVIsAtg~p~~----i~~~~~~~---g--~vViDv~~~~  211 (269)
                      ....|++|++.+...+    ....-+++   +  ...+.+.-+|
T Consensus        85 ~~~~Dili~~Aav~d~~p~~~~~~KIkk~~~~~~~l~l~L~~~p  128 (226)
T 1u7z_A           85 VQQQNIFIGCAAVADYRAATVAPEKIKKQATQGDELTIKMVKNP  128 (226)
T ss_dssp             GGGCSEEEECCBCCSEEESSCCSSCC-------CEEEEEEEECC
T ss_pred             cCCCCEEEECCcccCCCCccCChHHhccccccCCceEEEEeecH
Confidence            4678999999885432    33445665   2  4667777766

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.05  E-value=0.00071  Score=59.56  Aligned_cols=71  Identities=18%  Similarity=0.264  Sum_probs=55.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCC----ccc----
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LVR----  194 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~----~i~----  194 (269)
                      .+|.|||.|.+ |.+++..|.+.|.+|++++ +.              .++.+.++++|+||.+++.+.    .+.    
T Consensus         4 m~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~   81 (295)
T 1yb4_A            4 MKLGFIGLGIM-GSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHG   81 (295)
T ss_dssp             CEEEECCCSTT-HHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTS
T ss_pred             CEEEEEccCHH-HHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchh
Confidence            47999999886 9999999999999999887 42              234566788999999998653    222    


Q ss_pred             -CCCcCCCcEEEEeee
Q 024306          195 -GSWLKPGAVVLDVGT  209 (269)
Q Consensus       195 -~~~~~~g~vViDv~~  209 (269)
                       ...++++.+|+|+..
T Consensus        82 l~~~l~~~~~vv~~s~   97 (295)
T 1yb4_A           82 CAKTSLQGKTIVDMSS   97 (295)
T ss_dssp             STTSCCTTEEEEECSC
T ss_pred             HhhcCCCCCEEEECCC
Confidence             134678999999864

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.05  E-value=0.00079  Score=55.24  Aligned_cols=54  Identities=19%  Similarity=0.231  Sum_probs=43.7

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcCCCCEEEeccCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~aDiVIsAtg~  189 (269)
                      +++|+|+|++|.+|+.++..|.++|++|+++.|+..                     ++.+.++.+|+||+++|.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~   77 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccC
Confidence            478999999888899999999999999999876521                     234566778999988774

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.02  E-value=0.00053  Score=60.17  Aligned_cols=72  Identities=18%  Similarity=0.251  Sum_probs=55.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC----------------CCHhhhcC-CCCEEEeccCCCC---ccc
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT----------------KNPEQITS-EADIVIAAAGVAN---LVR  194 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t----------------~~l~~~~~-~aDiVIsAtg~p~---~i~  194 (269)
                      ++|.|||.|.+ |.+++..|.+.|.  +|++++++.                .++.+.++ ++|+||.+++...   .+.
T Consensus         2 ~~I~iIG~G~m-G~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~   80 (281)
T 2g5c_A            2 QNVLIVGVGFM-GGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAK   80 (281)
T ss_dssp             CEEEEESCSHH-HHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHH
T ss_pred             cEEEEEecCHH-HHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHHHHHHHHH
Confidence            47999999886 9999999999997  899987642                24556778 9999999998432   221


Q ss_pred             --CCCcCCCcEEEEeee
Q 024306          195 --GSWLKPGAVVLDVGT  209 (269)
Q Consensus       195 --~~~~~~g~vViDv~~  209 (269)
                        ...++++.+|+|++.
T Consensus        81 ~l~~~l~~~~iv~~~~~   97 (281)
T 2g5c_A           81 KLSYILSEDATVTDQGS   97 (281)
T ss_dssp             HHHHHSCTTCEEEECCS
T ss_pred             HHHhhCCCCcEEEECCC
Confidence              124678899999864

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=97.02  E-value=0.0015  Score=58.43  Aligned_cols=69  Identities=17%  Similarity=0.162  Sum_probs=53.2

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------------
Q 024306          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------------  171 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------------  171 (269)
                      +|.+++-+...+.     +++++|+|.|++|.+|+.++..|.++|.+|+++.|...                        
T Consensus        10 ~~~~~~~~~~~~~-----~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (351)
T 3ruf_A           10 YMSRYEEITQQLI-----FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFI   84 (351)
T ss_dssp             CCHHHHHHHHHHH-----HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEE
T ss_pred             HHHHHhhHHhhCC-----CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEE
Confidence            3555566555443     46899999999999999999999999999999877421                        


Q ss_pred             --------CHhhhcCCCCEEEeccCC
Q 024306          172 --------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       172 --------~l~~~~~~aDiVIsAtg~  189 (269)
                              ++.+.++++|+||...+.
T Consensus        85 ~~Dl~d~~~~~~~~~~~d~Vih~A~~  110 (351)
T 3ruf_A           85 EGDIRDLTTCEQVMKGVDHVLHQAAL  110 (351)
T ss_dssp             ECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             EccCCCHHHHHHHhcCCCEEEECCcc
Confidence                    134567789999988874

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.02  E-value=0.0011  Score=60.62  Aligned_cols=94  Identities=15%  Similarity=0.190  Sum_probs=64.9

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC---------------------Hh
Q 024306          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------------PE  174 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---------------------l~  174 (269)
                      +||....++..++..+....|++|+|+|+|+ +|..+++++...|++|+++.++...                     +.
T Consensus       168 l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~-vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~  246 (366)
T 1yqd_A          168 LLCAGITVYSPLKYFGLDEPGKHIGIVGLGG-LGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQ  246 (366)
T ss_dssp             GGTHHHHHHHHHHHTTCCCTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHH
T ss_pred             hhhhHHHHHHHHHhcCcCCCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHH
Confidence            4555555566777666554899999999876 5999999999999998877654321                     11


Q ss_pred             hhcCCCCEEEeccCCCCccc--CCCcCCCcEEEEeeec
Q 024306          175 QITSEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       175 ~~~~~aDiVIsAtg~p~~i~--~~~~~~g~vViDv~~~  210 (269)
                      +....+|+||+++|.+..+.  -+.++++-.++.++..
T Consensus       247 ~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          247 AAAGTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             HTTTCEEEEEECCSSCCCSHHHHHHEEEEEEEEECCCC
T ss_pred             HhhCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEccC
Confidence            22345799999998754322  2356777777777754

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=97.02  E-value=0.00087  Score=59.04  Aligned_cols=57  Identities=19%  Similarity=0.242  Sum_probs=46.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------------CHhhhcCCCCEEEecc
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------------NPEQITSEADIVIAAA  187 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------------~l~~~~~~aDiVIsAt  187 (269)
                      .+|+||.++|.|++.-+|+++++.|+++|++|.++.|...                        ...+....-|++|+..
T Consensus         7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnnA   86 (261)
T 4h15_A            7 LNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEGLPEELFVEADLTTKEGCAIVAEATRQRLGGVDVIVHML   86 (261)
T ss_dssp             CCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTTSCTTTEEECCTTSHHHHHHHHHHHHHHTSSCSEEEECC
T ss_pred             cCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhCCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            4789999999998887899999999999999999987531                        1123345679999887


Q ss_pred             C
Q 024306          188 G  188 (269)
Q Consensus       188 g  188 (269)
                      |
T Consensus        87 G   87 (261)
T 4h15_A           87 G   87 (261)
T ss_dssp             C
T ss_pred             C
Confidence            7

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.00  E-value=0.0009  Score=55.64  Aligned_cols=53  Identities=15%  Similarity=0.160  Sum_probs=43.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHh------------------hhcCCCCEEEeccCCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPE------------------QITSEADIVIAAAGVA  190 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~------------------~~~~~aDiVIsAtg~p  190 (269)
                      +|+|+|++|.+|+.++..|+++|++|+++.|....+.                  +.+..+|+||+..|.+
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~   72 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGIS   72 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCSS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcCC
Confidence            6999999888899999999999999999988632111                  4677899999998853

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.99  E-value=0.00045  Score=53.57  Aligned_cols=56  Identities=25%  Similarity=0.218  Sum_probs=41.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------C---Hhhh-cCCCCEEEeccCCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------N---PEQI-TSEADIVIAAAGVA  190 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------~---l~~~-~~~aDiVIsAtg~p  190 (269)
                      +++++++|+|+|.. |+.++..|.+.|++|+++.+...                  +   +.+. +.++|+||.+++.+
T Consensus         4 ~~~~~v~I~G~G~i-G~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            4 IKNKQFAVIGLGRF-GGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             --CCSEEEECCSHH-HHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             CcCCcEEEECCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence            46789999999665 99999999999999988876420                  1   1121 56789999888864

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=96.98  E-value=0.001  Score=63.62  Aligned_cols=78  Identities=15%  Similarity=0.242  Sum_probs=57.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------------CCHhhhcCC---CCEEEeccCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------------KNPEQITSE---ADIVIAAAGVA  190 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------------~~l~~~~~~---aDiVIsAtg~p  190 (269)
                      -..+.++|.|||.|.+ |.+++..|++.|.+|++.+|+.                  .++.+.+++   +|+||.+++.+
T Consensus        11 ~~~~~~~IgvIGlG~M-G~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~   89 (480)
T 2zyd_A           11 HHMSKQQIGVVGMAVM-GRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAG   89 (480)
T ss_dssp             ----CBSEEEECCSHH-HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSS
T ss_pred             cccCCCeEEEEccHHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCH
Confidence            3456788999999887 9999999999999999998762                  234455555   99999999874


Q ss_pred             Cc----cc--CCCcCCCcEEEEeeec
Q 024306          191 NL----VR--GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       191 ~~----i~--~~~~~~g~vViDv~~~  210 (269)
                      ..    +.  ...++++.+|||++..
T Consensus        90 ~~v~~vl~~l~~~l~~g~iIId~s~g  115 (480)
T 2zyd_A           90 AGTDAAIDSLKPYLDKGDIIIDGGNT  115 (480)
T ss_dssp             SHHHHHHHHHGGGCCTTCEEEECSCC
T ss_pred             HHHHHHHHHHHhhcCCCCEEEECCCC
Confidence            31    21  1346789999998743

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=96.97  E-value=0.0008  Score=58.90  Aligned_cols=69  Identities=22%  Similarity=0.216  Sum_probs=52.9

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------CCHhhhcCCCCEEEeccCCCC---ccc--CC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------KNPEQITSEADIVIAAAGVAN---LVR--GS  196 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------~~l~~~~~~aDiVIsAtg~p~---~i~--~~  196 (269)
                      +|.|||.|.+ |.+++..|.+.|.+|++++++.                .++.+. +++|+||.+++...   .+.  ..
T Consensus         2 ~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~~~~~~~~~l~~   79 (279)
T 2f1k_A            2 KIGVVGLGLI-GASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQLILPTLEKLIP   79 (279)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHHHHHHHHHHHGG
T ss_pred             EEEEEcCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHHHHHHHHHHHHh
Confidence            6899999886 9999999999999999997652                234455 78999999998422   221  23


Q ss_pred             CcCCCcEEEEee
Q 024306          197 WLKPGAVVLDVG  208 (269)
Q Consensus       197 ~~~~g~vViDv~  208 (269)
                      .++++++|+|++
T Consensus        80 ~~~~~~~vv~~~   91 (279)
T 2f1k_A           80 HLSPTAIVTDVA   91 (279)
T ss_dssp             GSCTTCEEEECC
T ss_pred             hCCCCCEEEECC
Confidence            467889999984

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.94  E-value=0.0012  Score=59.12  Aligned_cols=58  Identities=16%  Similarity=0.076  Sum_probs=44.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------CHhhhcCCCCEEEeccCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~l~~~~~~aDiVIsAtg~  189 (269)
                      .+.++|+|+|.|++|.+|+.++..|+++|++|+++.|...               .+.+.+++.|+||...+.
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSGTGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCCCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence            4568899999999998999999999999999999877531               245677899999988774

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.92  E-value=0.00089  Score=56.19  Aligned_cols=53  Identities=26%  Similarity=0.208  Sum_probs=44.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------CHhhhcCCCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~~~~~~aDiVIsAtg~  189 (269)
                      ++|+|.|++|.+|+.++..|.++|.+|+++.|...                    ++.+.+++.|+||+++|.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   77 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNP   77 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence            68999999999999999999999999999977621                    234667889999988874

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.91  E-value=0.0014  Score=58.26  Aligned_cols=70  Identities=17%  Similarity=0.235  Sum_probs=51.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------------------------------CCH
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------------------------------KNP  173 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------------------------------~~l  173 (269)
                      ++|.|||+|.+ |.++|..|++.|.+|++++++.                                           .++
T Consensus        16 ~~I~VIG~G~m-G~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~   94 (302)
T 1f0y_A           16 KHVTVIGGGLM-GAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA   94 (302)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCH
Confidence            68999999886 9999999999999999997652                                           123


Q ss_pred             hhhcCCCCEEEeccCCCC-----ccc--CCCcCCCcEEEEe
Q 024306          174 EQITSEADIVIAAAGVAN-----LVR--GSWLKPGAVVLDV  207 (269)
Q Consensus       174 ~~~~~~aDiVIsAtg~p~-----~i~--~~~~~~g~vViDv  207 (269)
                      .+.+++||+||.+++...     ++.  ...++++++|+..
T Consensus        95 ~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~  135 (302)
T 1f0y_A           95 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASN  135 (302)
T ss_dssp             HHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEEC
T ss_pred             HHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEC
Confidence            346789999999997431     111  2245667777653

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.90  E-value=0.0018  Score=58.61  Aligned_cols=94  Identities=19%  Similarity=0.121  Sum_probs=65.2

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhh---------------hcCCC
Q 024306          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQ---------------ITSEA  180 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~---------------~~~~a  180 (269)
                      +||....+...+++.++ -.|.+|+|+|+|+ +|..+++++...|++|+.+.++...++.               ..+.+
T Consensus       158 l~~~~~ta~~~l~~~~~-~~g~~VlV~GaG~-vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~  235 (348)
T 3two_A          158 LLCAGITTYSPLKFSKV-TKGTKVGVAGFGG-LGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEEL  235 (348)
T ss_dssp             GGTHHHHHHHHHHHTTC-CTTCEEEEESCSH-HHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCE
T ss_pred             hhhhHHHHHHHHHhcCC-CCCCEEEEECCcH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCC
Confidence            45554555666765533 3799999999966 5999999999999998887665433221               11257


Q ss_pred             CEEEeccCCCCcc--cCCCcCCCcEEEEeeecC
Q 024306          181 DIVIAAAGVANLV--RGSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       181 DiVIsAtg~p~~i--~~~~~~~g~vViDv~~~~  211 (269)
                      |+||+++|.+..+  .-+.++++-.++.+|...
T Consensus       236 D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          236 DFIISTIPTHYDLKDYLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             EEEEECCCSCCCHHHHHTTEEEEEEEEECCCCC
T ss_pred             CEEEECCCcHHHHHHHHHHHhcCCEEEEECCCC
Confidence            8999999977432  335678877788887643

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=96.90  E-value=0.0023  Score=59.07  Aligned_cols=94  Identities=17%  Similarity=0.218  Sum_probs=65.7

Q ss_pred             ccCCHHHHHHHH----HHhCC-CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------CHhhhc
Q 024306          116 IPCTPKGCIELL----IRSGV-EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQIT  177 (269)
Q Consensus       116 ~p~t~~g~~~~l----~~~~~-~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~  177 (269)
                      .+.|++|++..+    ++.+. +++||+|+|+|.|.+ |+.+++.|...|++|.++++...             +..+.+
T Consensus       150 ~~aTg~Gv~~~~~~~~~~~G~~~L~GktV~I~G~GnV-G~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell  228 (355)
T 1c1d_A          150 AFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAV-GGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVL  228 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGG
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCCCCCCEEEEECcCHH-HHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhh
Confidence            367888876554    55687 899999999999886 99999999999999987764421             122334


Q ss_pred             C-CCCEEEeccCCCCcccCCCcC--CCcEEEEeeecC
Q 024306          178 S-EADIVIAAAGVANLVRGSWLK--PGAVVLDVGTCP  211 (269)
Q Consensus       178 ~-~aDiVIsAtg~p~~i~~~~~~--~g~vViDv~~~~  211 (269)
                      . .+||++.+ ...+.|+.+.++  +..+|+..+-.|
T Consensus       229 ~~~~DIliP~-A~~~~I~~~~~~~lk~~iVie~AN~p  264 (355)
T 1c1d_A          229 STPCDVFAPC-AMGGVITTEVARTLDCSVVAGAANNV  264 (355)
T ss_dssp             GCCCSEEEEC-SCSCCBCHHHHHHCCCSEECCSCTTC
T ss_pred             cCccceecHh-HHHhhcCHHHHhhCCCCEEEECCCCC
Confidence            4 78998854 345566654322  256777766433

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=96.90  E-value=0.012  Score=53.19  Aligned_cols=149  Identities=10%  Similarity=0.067  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCC----CCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccc
Q 024306           22 SQTYVRNKIKACEEVGIKSIVTEFADG----CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG   97 (269)
Q Consensus        22 s~~y~~~~~~~~~~~Gi~~~~~~~~~~----~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg   97 (269)
                      |-.=--+-..++.++|.++.++.-...    ..-|-+.+..+-|+.-  +|+|.+-.|-..  ....+.+..      ..
T Consensus        52 STRTR~SFe~A~~~LGg~~i~l~~~~~~S~~~kgEsl~DTarvls~~--~D~iviR~~~~~--~~~~la~~~------~~  121 (310)
T 3csu_A           52 STRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTY--VDAIVMRHPQEG--AARLATEFS------GN  121 (310)
T ss_dssp             CHHHHHHHHHHHHTTTCEEEEESCC-----CCSHHHHHHHHHHHTTT--CSEEEEEESSTT--HHHHHHHHC------TT
T ss_pred             CccHHHHHHHHHHHhCCeEEEeCCCccchhhccCCcHHHHHHHHHHh--CCEEEEECCChh--HHHHHHHhc------CC
Confidence            443344466799999999988854332    1357899999999884  799999988443  223333322      12


Q ss_pred             cccceecccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC--cccHHHHHHHHHhC-CCEEEEEeCC----
Q 024306           98 FHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRH-HATVSIVHAL----  169 (269)
Q Consensus        98 ~~~~n~g~l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~g--g~vg~~~a~~L~~~-ga~Vti~~~~----  169 (269)
                      +-.+|.|.   |   +.+.||=+.+ ++.+.++. ..++|.+|+++|-+  +-|++.++..+... |++|+++...    
T Consensus       122 vPVINag~---G---~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~  194 (310)
T 3csu_A          122 VPVLNAGD---G---SNQHPTQTLLDLFTIQETQ-GRLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAM  194 (310)
T ss_dssp             CCEEEEEE---T---TSCCHHHHHHHHHHHHHHH-SCSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCC
T ss_pred             CCEEcCcc---C---CCCCchHHHHHHHHHHHHh-CCcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCccccc
Confidence            33456422   1   3456888887 44555554 47999999999986  45799999999999 9999999543    


Q ss_pred             -----------------CCCHhhhcCCCCEEEecc
Q 024306          170 -----------------TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       170 -----------------t~~l~~~~~~aDiVIsAt  187 (269)
                                       +.++.+.+++||+|.+-.
T Consensus       195 ~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~  229 (310)
T 3csu_A          195 PQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTR  229 (310)
T ss_dssp             CHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC
T ss_pred             CHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECC
Confidence                             245678899999999764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.88  E-value=0.0013  Score=52.60  Aligned_cols=37  Identities=19%  Similarity=0.187  Sum_probs=31.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ....+++|+|+|+|.. |+.++..|...|++|+++.++
T Consensus        15 ~~~~~~~v~IiG~G~i-G~~la~~L~~~g~~V~vid~~   51 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRL-GSLIANLASSSGHSVVVVDKN   51 (155)
T ss_dssp             --CCCCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESC
T ss_pred             cccCCCcEEEECCCHH-HHHHHHHHHhCCCeEEEEECC
Confidence            4567899999999775 999999999999999999764

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=96.88  E-value=0.0011  Score=57.22  Aligned_cols=69  Identities=17%  Similarity=0.249  Sum_probs=51.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC----EEEEEeCCC---------------CCHhhhcCCCCEEEeccCCCC---ccc
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA----TVSIVHALT---------------KNPEQITSEADIVIAAAGVAN---LVR  194 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga----~Vti~~~~t---------------~~l~~~~~~aDiVIsAtg~p~---~i~  194 (269)
                      ++|.|||.|.+ |.+++..|.+.|.    +|++++|+.               .+..+.++++|+||.++....   .+.
T Consensus         3 ~~i~iIG~G~m-G~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~~~~~~v~~   81 (247)
T 3gt0_A            3 KQIGFIGCGNM-GMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKPDLYASIIN   81 (247)
T ss_dssp             CCEEEECCSHH-HHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCTTTHHHHC-
T ss_pred             CeEEEECccHH-HHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCHHHHHHHHH
Confidence            57999999887 9999999999997    899998762               345667788999999995321   121


Q ss_pred             --CCCcCCCcEEEE
Q 024306          195 --GSWLKPGAVVLD  206 (269)
Q Consensus       195 --~~~~~~g~vViD  206 (269)
                        ...++++++|+.
T Consensus        82 ~l~~~l~~~~~vvs   95 (247)
T 3gt0_A           82 EIKEIIKNDAIIVT   95 (247)
T ss_dssp             --CCSSCTTCEEEE
T ss_pred             HHHhhcCCCCEEEE
Confidence              124567777764

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.87  E-value=0.0025  Score=56.07  Aligned_cols=40  Identities=18%  Similarity=0.229  Sum_probs=36.1

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      ..+|+||.++|-|++.-+|++++..|+++||+|.++.++.
T Consensus         2 ~~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~   41 (258)
T 4gkb_A            2 DLNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHA   41 (258)
T ss_dssp             CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCc
Confidence            3679999999999988889999999999999999998764

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.86  E-value=0.0011  Score=55.71  Aligned_cols=54  Identities=15%  Similarity=0.189  Sum_probs=43.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHH-hCCCEEEEEeCCCC------------------------CHhhhcCCCCEEEeccCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQ-RHHATVSIVHALTK------------------------NPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~-~~ga~Vti~~~~t~------------------------~l~~~~~~aDiVIsAtg~p  190 (269)
                      |+++|.|++|-+|++++..|+ ++|++|+++.|+..                        ++.+.++++|+||++.|..
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~   84 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMES   84 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCC
Confidence            679999988888999999999 89999999877532                        1235677889999888854

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.84  E-value=0.001  Score=60.00  Aligned_cols=72  Identities=8%  Similarity=0.134  Sum_probs=53.6

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCC----CEEEEEeCCCC----------------CHhhhcCCCCEEEeccCCCC---c
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHH----ATVSIVHALTK----------------NPEQITSEADIVIAAAGVAN---L  192 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~g----a~Vti~~~~t~----------------~l~~~~~~aDiVIsAtg~p~---~  192 (269)
                      ..+|.|||.|.+ |.+++..|.+.|    .+|++++|+..                +..+.++++|+||.+++...   .
T Consensus        22 ~mkI~iIG~G~m-G~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~~~~~~~v  100 (322)
T 2izz_A           22 SMSVGFIGAGQL-AFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFI  100 (322)
T ss_dssp             CCCEEEESCSHH-HHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSCGGGHHHH
T ss_pred             CCEEEEECCCHH-HHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeCHHHHHHH
Confidence            357999999886 999999999999    67999988642                23455678999999998321   1


Q ss_pred             cc--CCCcCCCcEEEEee
Q 024306          193 VR--GSWLKPGAVVLDVG  208 (269)
Q Consensus       193 i~--~~~~~~g~vViDv~  208 (269)
                      +.  ...++++.+|+|+.
T Consensus       101 l~~l~~~l~~~~ivvs~s  118 (322)
T 2izz_A          101 LDEIGADIEDRHIVVSCA  118 (322)
T ss_dssp             HHHHGGGCCTTCEEEECC
T ss_pred             HHHHHhhcCCCCEEEEeC
Confidence            11  12456788999974

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.84  E-value=0.00054  Score=61.97  Aligned_cols=95  Identities=17%  Similarity=0.040  Sum_probs=64.5

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------CHhh--
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------NPEQ--  175 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------~l~~--  175 (269)
                      |+.+..+...+.+..---.|++|+|+|+|+.+|..+++++...|++|+++.++..                   ++.+  
T Consensus       126 ~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~  205 (340)
T 3gms_A          126 YINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETV  205 (340)
T ss_dssp             SHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHH
T ss_pred             cchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHH
Confidence            4444555555543333347999999999977799999999999999888865432                   2211  


Q ss_pred             --hc--CCCCEEEeccCCCCcc-cCCCcCCCcEEEEeeecC
Q 024306          176 --IT--SEADIVIAAAGVANLV-RGSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       176 --~~--~~aDiVIsAtg~p~~i-~~~~~~~g~vViDv~~~~  211 (269)
                        .+  +..|+||+++|.+... ..+.++++-.++.+|...
T Consensus       206 ~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~~  246 (340)
T 3gms_A          206 MELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTIGLLS  246 (340)
T ss_dssp             HHHTTTSCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTT
T ss_pred             HHHhCCCCCcEEEECCCChhHHHHHHHhcCCCEEEEEeecC
Confidence              12  2589999999965431 225678888888888643

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=96.84  E-value=0.0023  Score=55.91  Aligned_cols=56  Identities=18%  Similarity=0.261  Sum_probs=45.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC------------------------HhhhcCCCCEEEeccCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN------------------------PEQITSEADIVIAAAGV  189 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~------------------------l~~~~~~aDiVIsAtg~  189 (269)
                      ++||.++|-|++.-+|+++++.|+++||+|.++.++.+.                        +.+...+-|++||..|.
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAGi   88 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAGI   88 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence            589999999998888999999999999999999876321                        22445667899988774

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.84  E-value=0.0018  Score=57.29  Aligned_cols=71  Identities=20%  Similarity=0.253  Sum_probs=52.6

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------------------------CCHhhhc
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------------------KNPEQIT  177 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------------------------~~l~~~~  177 (269)
                      ++|.|||+|.+ |.++|..|++.|.+|++++++.                                       .++.+.+
T Consensus         5 ~kV~VIGaG~m-G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~   83 (283)
T 4e12_A            5 TNVTVLGTGVL-GSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAV   83 (283)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHT
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHh
Confidence            68999999886 9999999999999999997652                                       1234567


Q ss_pred             CCCCEEEeccCCC-C----ccc--CCCcCCCcEEEEee
Q 024306          178 SEADIVIAAAGVA-N----LVR--GSWLKPGAVVLDVG  208 (269)
Q Consensus       178 ~~aDiVIsAtg~p-~----~i~--~~~~~~g~vViDv~  208 (269)
                      ++||+||.+++.. .    ++.  ...+++++++++..
T Consensus        84 ~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~t  121 (283)
T 4e12_A           84 KDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNS  121 (283)
T ss_dssp             TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred             ccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECC
Confidence            8999999999842 1    111  12356777777644

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.83  E-value=0.0022  Score=58.43  Aligned_cols=94  Identities=18%  Similarity=0.228  Sum_probs=64.5

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH---------------------h
Q 024306          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP---------------------E  174 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l---------------------~  174 (269)
                      +||....+...+++.+....|.+|+|+|+|+ +|..+++++...|++|+++.+....+                     .
T Consensus       161 l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~-vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~  239 (357)
T 2cf5_A          161 LLCAGVTVYSPLSHFGLKQPGLRGGILGLGG-VGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMS  239 (357)
T ss_dssp             GGTHHHHHHHHHHHTSTTSTTCEEEEECCSH-HHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHH
T ss_pred             hhhhHHHHHHHHHhcCCCCCCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHH
Confidence            3454444566676655544799999999876 59999999999999988776543211                     1


Q ss_pred             hhcCCCCEEEeccCCCCcc--cCCCcCCCcEEEEeeec
Q 024306          175 QITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       175 ~~~~~aDiVIsAtg~p~~i--~~~~~~~g~vViDv~~~  210 (269)
                      +....+|+||.++|.+..+  .-+.++++-.++.++..
T Consensus       240 ~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~  277 (357)
T 2cf5_A          240 ELADSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVI  277 (357)
T ss_dssp             HSTTTEEEEEECCCSCCCSHHHHTTEEEEEEEEECSCC
T ss_pred             HhcCCCCEEEECCCChHHHHHHHHHhccCCEEEEeCCC
Confidence            1223579999999876432  23467777777778754

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=96.82  E-value=0.0013  Score=57.19  Aligned_cols=37  Identities=16%  Similarity=0.261  Sum_probs=33.2

Q ss_pred             CCCccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+|+||.++|.|++   |+ |+++|+.|+++||+|.++.|+
T Consensus         2 ~~l~gK~alVTGaa~~~GI-G~aiA~~la~~Ga~Vvi~~r~   41 (256)
T 4fs3_A            2 LNLENKTYVIMGIANKRSI-AFGVAKVLDQLGAKLVFTYRK   41 (256)
T ss_dssp             CCCTTCEEEEECCCSTTCH-HHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCCchH-HHHHHHHHHHCCCEEEEEECC
Confidence            46899999999975   65 999999999999999999776

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=96.82  E-value=0.0053  Score=55.41  Aligned_cols=143  Identities=11%  Similarity=0.104  Sum_probs=98.8

Q ss_pred             HHHHHHHHcCCeEEEEEcCCC-C-CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceecc
Q 024306           28 NKIKACEEVGIKSIVTEFADG-C-TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGN  105 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~-~-~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~  105 (269)
                      +-..++.++|.++.++.-... . .-|-+.+.++-|.. -++|+|.+--|-..  ....+.+..       .+-.+|.| 
T Consensus        53 SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~-~~~D~iviR~~~~~--~~~~la~~~-------~vPVINag-  121 (304)
T 3r7f_A           53 SFEVAEKKLGMNVLNLDGTSTSVQKGETLYDTIRTLES-IGVDVCVIRHSEDE--YYEELVSQV-------NIPILNAG-  121 (304)
T ss_dssp             HHHHHHHHTTCEEEEEETTSTTSCSSSCHHHHHHHHHH-HTCCEEEEECSSTT--CHHHHHHHC-------SSCEEESC-
T ss_pred             hHHHHHHHCCCeEEEECcccccCCCCCCHHHHHHHHHH-hcCCEEEEecCChh--HHHHHHHhC-------CCCEEeCC-
Confidence            456789999999998853211 1 13457777777766 35789999988443  334443322       12234542 


Q ss_pred             cccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC--cccHHHHHHHHHhCCCEEEEEeCC-----------CC
Q 024306          106 LAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVHAL-----------TK  171 (269)
Q Consensus       106 l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~g--g~vg~~~a~~L~~~ga~Vti~~~~-----------t~  171 (269)
                           +.+.+.||=+.+ ++.+.|+.+ .++|.+|+++|-+  +-|++.++..+...|++|+++...           +.
T Consensus       122 -----dg~~~HPtQaLaDl~Ti~e~~g-~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~g~~~  195 (304)
T 3r7f_A          122 -----DGCGQHPTQSLLDLMTIYEEFN-TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYV  195 (304)
T ss_dssp             -----CTTSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTCSSCEEC
T ss_pred             -----CCCCcCcHHHHHHHHHHHHHhC-CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcchhhcCccC
Confidence                 234566988877 445555554 7999999999987  347999999999999999999643           23


Q ss_pred             CHhhhcCCCCEEEecc
Q 024306          172 NPEQITSEADIVIAAA  187 (269)
Q Consensus       172 ~l~~~~~~aDiVIsAt  187 (269)
                      ++.+.+++||+|++-.
T Consensus       196 d~~eav~~aDvvyt~~  211 (304)
T 3r7f_A          196 SMDEAVESSDVVMLLR  211 (304)
T ss_dssp             CHHHHHHHCSEEEECC
T ss_pred             CHHHHhCCCCEEEecc
Confidence            6778899999999854

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.81  E-value=0.00074  Score=59.63  Aligned_cols=72  Identities=17%  Similarity=0.309  Sum_probs=53.9

Q ss_pred             ceEEEEcC-CcccHHHHHHHHHhCCCEEEEEeCCCC-------------CHhhhcCCCCEEEeccCCCC---ccc--CCC
Q 024306          137 KNAVVIGR-SNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVIAAAGVAN---LVR--GSW  197 (269)
Q Consensus       137 k~v~ViG~-gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~~~aDiVIsAtg~p~---~i~--~~~  197 (269)
                      ++|.|||. |.+ |.+++..|.+.|.+|++++++..             +..+.++++|+||.+++...   .+.  ...
T Consensus        12 m~I~iIG~tG~m-G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~av~~~~~~~v~~~l~~~   90 (286)
T 3c24_A           12 KTVAILGAGGKM-GARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLALPDNIIEKVAEDIVPR   90 (286)
T ss_dssp             CEEEEETTTSHH-HHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEECSCHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEcCCchHHHHHHHHHHHh
Confidence            48999999 665 99999999999999999987531             33456788999999998422   121  123


Q ss_pred             cCCCcEEEEeee
Q 024306          198 LKPGAVVLDVGT  209 (269)
Q Consensus       198 ~~~g~vViDv~~  209 (269)
                      ++++++|+|+..
T Consensus        91 l~~~~ivv~~s~  102 (286)
T 3c24_A           91 VRPGTIVLILDA  102 (286)
T ss_dssp             SCTTCEEEESCS
T ss_pred             CCCCCEEEECCC
Confidence            577889988653

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.81  E-value=0.0011  Score=55.53  Aligned_cols=52  Identities=13%  Similarity=0.144  Sum_probs=43.1

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------CHhhhcCCCCEEEeccCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~~~~~~aDiVIsAtg~  189 (269)
                      +|+|.|++|.+|+.++..|.++|++|+++.|...                    ++.+.+++.|+||+.+|.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~   73 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGS   73 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCCTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhcCCceEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence            6999999999999999999999999999987621                    234567788999988874

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=96.80  E-value=0.0016  Score=62.91  Aligned_cols=166  Identities=14%  Similarity=0.181  Sum_probs=111.4

Q ss_pred             HHHHHHHHc-CCe---EEEEEcCCCCC--------------------------HHHHHHHHHhhhcCCCcCEEEEeCCCC
Q 024306           28 NKIKACEEV-GIK---SIVTEFADGCT--------------------------EDEVLNALSNYNQDSSINGILVQLPLP   77 (269)
Q Consensus        28 ~~~~~~~~~-Gi~---~~~~~~~~~~~--------------------------~~~l~~~i~~ln~d~~v~Gi~V~~Pl~   77 (269)
                      .|.-.|..+ ||+   +.-++++..+.                          .+|+.++++..--  ..-||+.     
T Consensus       160 GKl~Ly~~~aGIdP~~~lPI~LD~GTnn~~LL~DplYlG~r~~Rv~g~eyd~fvdefv~av~~~fG--p~~~I~~-----  232 (555)
T 1gq2_A          160 GKLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYG--MNCLIQF-----  232 (555)
T ss_dssp             HHHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCTHHHHHHHHHHHHHHHHHHC--TTCEEEE-----
T ss_pred             hHHHHhHhccCCChhheeeeEeecCCCchhhcCCCccCCcCCCCCchHHHHHHHHHHHHHHHHhhC--CCcEEee-----
Confidence            677777776 599   88888876322                          3455555544321  2346766     


Q ss_pred             CCCCHHHHHhcCCccc-cccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHH
Q 024306           78 QHLDEGKILDAVSLEK-DVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLL  156 (269)
Q Consensus        78 ~~~~~~~i~~~i~p~k-dvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L  156 (269)
                      |.+...+.+..++-.+ ++-.   .|       ++..+---.+..|++..++-.+.++++.++++.|+|.+ |.+++.+|
T Consensus       233 EDf~~~~af~il~ryr~~ipv---Fn-------DDiqGTa~V~lAgllnAlki~gk~l~d~riv~~GAGaA-g~gia~ll  301 (555)
T 1gq2_A          233 EDFANANAFRLLHKYRNKYCT---FN-------DDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEA-ALGIANLI  301 (555)
T ss_dssp             CSCCHHHHHHHHHHHTTTSEE---EE-------TTTHHHHHHHHHHHHHHHHHHTSCGGGCCEEEECCSHH-HHHHHHHH
T ss_pred             cccCCccHHHHHHHHhccCCE---ec-------CccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHH
Confidence            5555544444333322 2222   12       11222112245778899999999999999999999998 99999998


Q ss_pred             Hh----CCC-------EEEEEeCC-----------------------CCCHhhhcCC--CCEEEeccCCCCcccCCCcC-
Q 024306          157 QR----HHA-------TVSIVHAL-----------------------TKNPEQITSE--ADIVIAAAGVANLVRGSWLK-  199 (269)
Q Consensus       157 ~~----~ga-------~Vti~~~~-----------------------t~~l~~~~~~--aDiVIsAtg~p~~i~~~~~~-  199 (269)
                      ..    +|.       ++++|+++                       ..+|.+.++.  +|++|-..+.|+.+++++++ 
T Consensus       302 ~~~~~~~G~~~eeA~~~i~~~D~~Gli~~~r~~l~~~k~~~A~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~  381 (555)
T 1gq2_A          302 VMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFAHEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQD  381 (555)
T ss_dssp             HHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGCBSCCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHH
T ss_pred             HHHHHHcCCChHHHhCcEEEEECCCeeeCCCCCchHHHHHHHhhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHH
Confidence            87    673       59999654                       1257788884  99999888888899999875 


Q ss_pred             -----CCcEEEEeeecCC
Q 024306          200 -----PGAVVLDVGTCPV  212 (269)
Q Consensus       200 -----~g~vViDv~~~~~  212 (269)
                           +.-+|+=++ ||.
T Consensus       382 Ma~~~~~PIIFaLS-NPt  398 (555)
T 1gq2_A          382 MAAFNKRPIIFALS-NPT  398 (555)
T ss_dssp             HHHHCSSCEEEECC-SSG
T ss_pred             HHhcCCCCEEEECC-CCC
Confidence                 566787777 553

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.80  E-value=0.0021  Score=57.37  Aligned_cols=58  Identities=9%  Similarity=0.056  Sum_probs=46.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------CHhhhcC--CCCEEEec
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------NPEQITS--EADIVIAA  186 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------~l~~~~~--~aDiVIsA  186 (269)
                      .++++++|+|.|++|.+|+.++..|+++|++|+++.|...                       ++.+.++  ..|+||+.
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~   95 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHS   95 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEEC
Confidence            4578999999999888999999999999999999877421                       1234555  78999988


Q ss_pred             cCC
Q 024306          187 AGV  189 (269)
Q Consensus       187 tg~  189 (269)
                      .|.
T Consensus        96 A~~   98 (330)
T 2pzm_A           96 AAA   98 (330)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            874

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.80  E-value=0.0024  Score=55.12  Aligned_cols=38  Identities=21%  Similarity=0.237  Sum_probs=34.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +++||+++|.|+++-+|++++..|+++|++|.++.|+.
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~   41 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKP   41 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            57899999999988889999999999999999987763

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.79  E-value=0.0026  Score=54.85  Aligned_cols=60  Identities=25%  Similarity=0.294  Sum_probs=45.3

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------CCHhh---hcCCCCEEEeccCC
Q 024306          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------KNPEQ---ITSEADIVIAAAGV  189 (269)
Q Consensus       130 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------~~l~~---~~~~aDiVIsAtg~  189 (269)
                      ...+++||+++|.|+++-+|++++..|+++|++|.++.|+.                .++.+   .+...|+||+..|.
T Consensus        13 ~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~iD~lv~~Ag~   91 (249)
T 1o5i_A           13 MELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGG   91 (249)
T ss_dssp             ---CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCC
T ss_pred             HHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCeEEEeeHHHHHHHHHHHhcCCCEEEECCCC
Confidence            34568999999999988889999999999999999987752                12222   23367899988774

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.79  E-value=0.0026  Score=54.69  Aligned_cols=39  Identities=23%  Similarity=0.268  Sum_probs=35.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .+++||+++|.|+++-+|+.+++.|+++|++|+++.|+.
T Consensus         8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~   46 (265)
T 2o23_A            8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPN   46 (265)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCc
Confidence            357899999999999999999999999999999987764

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=96.78  E-value=0.0018  Score=63.11  Aligned_cols=92  Identities=8%  Similarity=0.116  Sum_probs=75.6

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh----CCC-------EEEEEeCC------------------
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR----HHA-------TVSIVHAL------------------  169 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~----~ga-------~Vti~~~~------------------  169 (269)
                      +..|++..++-.+.++++.++++.|+|.+ |.+++.+|..    .|.       .+++|+++                  
T Consensus       303 ~lAgllnAlki~gk~l~d~riv~~GAGaA-gigia~ll~~~m~~~Gl~~eeA~~~i~~vD~~Gli~~~r~~l~~~k~~~A  381 (605)
T 1o0s_A          303 IVAGLLTCTRVTKKLVSQEKYLFFGAGAA-STGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFA  381 (605)
T ss_dssp             HHHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTC
T ss_pred             HHHHHHHHHHHhCCChhhcEEEEECCCHH-HHHHHHHHHHHHHHcCCChhhhhCeEEEEECCCceeCCCCCchHHHHHHH
Confidence            45788999999999999999999999998 9999999887    784       49999654                  


Q ss_pred             -----CCCHhhhcCC--CCEEEeccCCCCcccCCCcC------CCcEEEEeeecCC
Q 024306          170 -----TKNPEQITSE--ADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  212 (269)
Q Consensus       170 -----t~~l~~~~~~--aDiVIsAtg~p~~i~~~~~~------~g~vViDv~~~~~  212 (269)
                           ..+|.+.++.  +|++|-..+.|+.+++++++      +.-+|+=++ ||.
T Consensus       382 ~~~~~~~~L~eav~~vkpdVlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  436 (605)
T 1o0s_A          382 KDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALS-NPT  436 (605)
T ss_dssp             BSSCCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             hhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC-CCC
Confidence                 1257788884  99999988888899999875      466787777 553

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.77  E-value=0.0013  Score=51.51  Aligned_cols=54  Identities=15%  Similarity=0.060  Sum_probs=41.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------C---Hhh-hcCCCCEEEeccCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------N---PEQ-ITSEADIVIAAAGV  189 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------~---l~~-~~~~aDiVIsAtg~  189 (269)
                      +.++++|+|+|.. |+.++..|.++|.+|+++.+...                  +   +.+ .+.++|+||.+++.
T Consensus         5 ~~~~v~I~G~G~i-G~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~   80 (141)
T 3llv_A            5 GRYEYIVIGSEAA-GVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSD   80 (141)
T ss_dssp             -CCSEEEECCSHH-HHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCC
Confidence            4578999999885 99999999999999999976521                  1   111 24678999998884

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.76  E-value=0.001  Score=58.53  Aligned_cols=38  Identities=24%  Similarity=0.274  Sum_probs=35.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|+||.++|-|+++-+|+++++.|+++||+|.++.++
T Consensus         5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~   42 (255)
T 4g81_D            5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIR   42 (255)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            58999999999998888999999999999999999765

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.76  E-value=0.00074  Score=59.01  Aligned_cols=35  Identities=11%  Similarity=0.274  Sum_probs=31.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  169 (269)
                      +++++|+|+|+||. |.++++.|+..|. +++++++.
T Consensus        29 l~~~~VlVvG~Gg~-G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           29 LKDSRVLIVGLGGL-GCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             HHHCEEEEECCSHH-HHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCeEEEEeeCHH-HHHHHHHHHHcCCCeEEEEcCC
Confidence            56899999999997 9999999999997 79998654

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.75  E-value=0.0017  Score=54.90  Aligned_cols=56  Identities=11%  Similarity=-0.004  Sum_probs=45.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCC--------------------CCHhhhcCCCCEEEeccCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALT--------------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~t--------------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      .++++|+|.|++|.+|+.++..|.++  |++|+++.|+.                    .++.+.+++.|+||+.+|.
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   79 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence            46789999999888999999999999  78999987742                    1234567789999988874

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=96.75  E-value=0.0093  Score=53.73  Aligned_cols=147  Identities=12%  Similarity=0.048  Sum_probs=100.7

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCC--CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccc
Q 024306           22 SQTYVRNKIKACEEVGIKSIVTEFADGC--TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH   99 (269)
Q Consensus        22 s~~y~~~~~~~~~~~Gi~~~~~~~~~~~--~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~   99 (269)
                      |-.=--+-..+++++|.++.++.-....  .-|-+.+.++-|+.-  +|+|.+-.|-.      ..++.+....   .+-
T Consensus        56 STRTR~SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~--~D~iviR~~~~------~~~~~la~~~---~vP  124 (301)
T 2ef0_A           56 SLRTRTTLEVAMVHLGGHAVYLDQKQVGIGEREPVRDVAKNLERF--VEGIAARVFRH------ETVEALARHA---KVP  124 (301)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEEGGGSCTTTCCCHHHHHHHHTTT--CSEEEEECSSH------HHHHHHHHHC---SSC
T ss_pred             CcchHHHHHHHHHHcCCeEEEECCcccccCCCCchHHHHHHHHHh--CCEEEEecCCh------HHHHHHHHHC---CCC
Confidence            3333334667999999999988743211  134578888888774  78999987732      2222221111   233


Q ss_pred             cceecccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------
Q 024306          100 PLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------  170 (269)
Q Consensus       100 ~~n~g~l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------  170 (269)
                      .+|.|       .+.+.||=+.+ ++.+.++. ..++|.+|+++|-++-|++.++..|...|++|+++....        
T Consensus       125 VINa~-------~~~~HPtQaLaDl~Ti~e~~-g~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~  196 (301)
T 2ef0_A          125 VVNAL-------SDRAHPLQALADLLTLKEVF-GGLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLL  196 (301)
T ss_dssp             EEEEE-------CSSCCHHHHHHHHHHHHHHH-SCCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHH
T ss_pred             EEeCC-------CCccCchHHHHHHHHHHHHh-CCcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHH
Confidence            45643       23456888777 44555554 479999999999988889999999999999999996542        


Q ss_pred             --------CCHhhhcCCCCEEEecc
Q 024306          171 --------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       171 --------~~l~~~~~~aDiVIsAt  187 (269)
                              .++.+.+++||+|.+-.
T Consensus       197 ~~~~~~~~~d~~eav~~aDvvy~~~  221 (301)
T 2ef0_A          197 KRANAFFTHDPKEAALGAHALYTDV  221 (301)
T ss_dssp             HHHTCEEESCHHHHHTTCSEEEECC
T ss_pred             hhceeEEECCHHHHhcCCCEEEecC
Confidence                    45678899999999743

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.75  E-value=0.00091  Score=58.16  Aligned_cols=55  Identities=13%  Similarity=0.143  Sum_probs=45.9

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------CHhhhcCCCCEEEeccCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------~l~~~~~~aDiVIsAtg~  189 (269)
                      ++|+|+|.|++|-+|+.++..|+++|++|+++.|...                  ++.+.+++.|+||+..|.
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~   74 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECVQCDLADANAVNAMVAGCDGIVHLGGI   74 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCCCTTEEEEECCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccccCCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCC
Confidence            5789999999888899999999999999999877531                  234667889999988874

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.75  E-value=0.0018  Score=56.03  Aligned_cols=69  Identities=14%  Similarity=0.140  Sum_probs=51.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------CCHhhhcCCCCEEEeccCCCCc---ccCCCc
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------KNPEQITSEADIVIAAAGVANL---VRGSWL  198 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------~~l~~~~~~aDiVIsAtg~p~~---i~~~~~  198 (269)
                      .+|.|||.|.+ |++++..|.+.|..|++++++.               .++.+.++++|+||.+++ |..   +-. .+
T Consensus         4 m~i~iiG~G~m-G~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~v~~-~l   80 (259)
T 2ahr_A            4 MKIGIIGVGKM-ASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVLK-PL   80 (259)
T ss_dssp             CEEEEECCSHH-HHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHHT-TS
T ss_pred             cEEEEECCCHH-HHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHHHHH-Hh
Confidence            47999999886 9999999999998899998752               245566789999999998 331   111 13


Q ss_pred             CCCcEEEEee
Q 024306          199 KPGAVVLDVG  208 (269)
Q Consensus       199 ~~g~vViDv~  208 (269)
                      +++.+++|+.
T Consensus        81 ~~~~~vv~~~   90 (259)
T 2ahr_A           81 HFKQPIISMA   90 (259)
T ss_dssp             CCCSCEEECC
T ss_pred             ccCCEEEEeC
Confidence            4666777763

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.74  E-value=0.0015  Score=57.42  Aligned_cols=38  Identities=18%  Similarity=0.215  Sum_probs=34.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+|+||.++|-|++.-+|+++|+.|+++|++|.++.++
T Consensus         3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~   40 (254)
T 4fn4_A            3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELL   40 (254)
T ss_dssp             GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            36899999999998888999999999999999999876

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.74  E-value=0.0083  Score=54.83  Aligned_cols=142  Identities=12%  Similarity=0.049  Sum_probs=97.7

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC--CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceecc
Q 024306           28 NKIKACEEVGIKSIVTEFADGC--TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGN  105 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~--~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~  105 (269)
                      +-..++.++|.++.++.-....  .-|-+.+.++-|+.-  +|+|.+--|-.      ..+..+..  -. ++-.+|.| 
T Consensus        61 SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~--~D~IviR~~~~------~~~~~lA~--~~-~vPVINa~-  128 (333)
T 1duv_G           61 SFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRM--YDGIQYRGYGQ------EIVETLAE--YA-SVPVWNGL-  128 (333)
T ss_dssp             HHHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHTTT--CSEEEEECSCH------HHHHHHHH--HH-SSCEEESC-
T ss_pred             HHHHHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHHh--CCEEEEEcCCc------hHHHHHHH--hC-CCCeEcCC-
Confidence            3567899999999988532210  134588888888774  78999987732      22222211  11 23345632 


Q ss_pred             cccCCCCCccccCCHHH-HHHHHHH-hCCCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC-------------
Q 024306          106 LAMRGREPLFIPCTPKG-CIELLIR-SGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL-------------  169 (269)
Q Consensus       106 l~~g~~~~~~~p~t~~g-~~~~l~~-~~~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~-------------  169 (269)
                            ++.+.||=+.+ ++.+.++ .+..++|.+++++|-+ ..|++.++..++..|++|+++...             
T Consensus       129 ------~~~~HPtQ~LaDl~Ti~e~~~g~~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~  202 (333)
T 1duv_G          129 ------TNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECR  202 (333)
T ss_dssp             ------CSSCCHHHHHHHHHHHHHHSTTCCGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHH
T ss_pred             ------CCCCCchHHHHHHHHHHHHhcCCCCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHH
Confidence                  34567998888 4555555 4547999999999997 567999999999999999999543             


Q ss_pred             ------------CCCHhhhcCCCCEEEecc
Q 024306          170 ------------TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       170 ------------t~~l~~~~~~aDiVIsAt  187 (269)
                                  +.++.+.+++||+|.+-+
T Consensus       203 ~~a~~~G~~v~~~~d~~eav~~aDvvytd~  232 (333)
T 1duv_G          203 ALAQQNGGNITLTEDVAKGVEGADFIYTDV  232 (333)
T ss_dssp             HHHHHTTCEEEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHHcCCeEEEEECHHHHhCCCCEEEeCC
Confidence                        235667899999999733

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.74  E-value=0.00099  Score=54.64  Aligned_cols=58  Identities=16%  Similarity=0.130  Sum_probs=45.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhC-CCEEEEEeCCCC------------------C---Hhhh--cCCCCEEEecc
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALTK------------------N---PEQI--TSEADIVIAAA  187 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t~------------------~---l~~~--~~~aDiVIsAt  187 (269)
                      .++.+++++|+|.|.+ |+.++..|.+. |.+|+++.++..                  +   +.+.  +.++|+||.++
T Consensus        35 ~~~~~~~v~IiG~G~~-G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~  113 (183)
T 3c85_A           35 INPGHAQVLILGMGRI-GTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAM  113 (183)
T ss_dssp             BCCTTCSEEEECCSHH-HHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECC
T ss_pred             cCCCCCcEEEECCCHH-HHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeC
Confidence            4567889999999876 99999999999 999999976520                  1   2333  67889999988


Q ss_pred             CCC
Q 024306          188 GVA  190 (269)
Q Consensus       188 g~p  190 (269)
                      +.+
T Consensus       114 ~~~  116 (183)
T 3c85_A          114 PHH  116 (183)
T ss_dssp             SSH
T ss_pred             CCh
Confidence            853

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.74  E-value=0.014  Score=52.84  Aligned_cols=141  Identities=13%  Similarity=0.154  Sum_probs=97.9

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC--CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceecc
Q 024306           28 NKIKACEEVGIKSIVTEFADGC--TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGN  105 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~--~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~  105 (269)
                      +-..++.++|.++.++.-....  .-|-+.+.++-|+.-  +|+|.+-.|-.      ..++.+....   .+-.+|.| 
T Consensus        63 SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~--~D~iviR~~~~------~~~~~lA~~~---~vPVINa~-  130 (315)
T 1pvv_A           63 SFEVAMAHLGGHALYLNAQDLQLRRGETIADTARVLSRY--VDAIMARVYDH------KDVEDLAKYA---TVPVINGL-  130 (315)
T ss_dssp             HHHHHHHHTTSEEEEEEGGGSTTTTTCCHHHHHHHHTTT--CSEEEEECSSH------HHHHHHHHHC---SSCEEEEE-
T ss_pred             HHHHHHHHcCCeEEEECCccccCCCCcCHHHHHHHHHHh--CcEEEEecCch------HHHHHHHHhC---CCCEEcCC-
Confidence            3567899999999988743210  134677888888774  78999987732      2222221111   23345642 


Q ss_pred             cccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC---------------
Q 024306          106 LAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---------------  169 (269)
Q Consensus       106 l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~---------------  169 (269)
                            ++.+.||=+.+ ++.+.++. ..++|.+|+++|-++-|++.++..+...|++|+++...               
T Consensus       131 ------~~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~  203 (315)
T 1pvv_A          131 ------SDFSHPCQALADYMTIWEKK-GTIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQN  203 (315)
T ss_dssp             ------CSSCCHHHHHHHHHHHHHHH-SCCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             ------CCCCCcHHHHHHHHHHHHHh-CCcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHH
Confidence                  23456888887 45555555 47999999999998888999999999999999999643               


Q ss_pred             ----------CCCHhhhcCCCCEEEecc
Q 024306          170 ----------TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       170 ----------t~~l~~~~~~aDiVIsAt  187 (269)
                                +.++.+.+++||+|.+-+
T Consensus       204 a~~~g~~~~~~~d~~eav~~aDvvy~~~  231 (315)
T 1pvv_A          204 AAESGGSFELLHDPVKAVKDADVIYTDV  231 (315)
T ss_dssp             HHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             HHHcCCeEEEEeCHHHHhCCCCEEEEcc
Confidence                      234567899999999743

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.74  E-value=0.0012  Score=56.19  Aligned_cols=57  Identities=16%  Similarity=0.132  Sum_probs=45.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCC---------------------CHhhhcCCCCEEEeccCCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK---------------------NPEQITSEADIVIAAAGVAN  191 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~---------------------~l~~~~~~aDiVIsAtg~p~  191 (269)
                      ..|+|+|.|++|-+|+.++..|+++| ++|+++.|...                     ++.+.++.+|+||++.|.+.
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~  100 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED  100 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence            45889999988888999999999999 89999877521                     23456788999998777543

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.74  E-value=0.0018  Score=57.87  Aligned_cols=68  Identities=15%  Similarity=0.171  Sum_probs=53.2

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeC--CC-------------------------C--CHhhhcCCCCEEEeccC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHA--LT-------------------------K--NPEQITSEADIVIAAAG  188 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~--~t-------------------------~--~l~~~~~~aDiVIsAtg  188 (269)
                      +|.|||+|.+ |.+++..|.+.|.+|+++++  +.                         .  ++.+.++++|+||.+++
T Consensus         2 ~I~iiG~G~m-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            2 IVSILGAGAM-GSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             EEEEESCCHH-HHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             EEEEECcCHH-HHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            6899999886 99999999999999999988  41                         0  23345778999999998


Q ss_pred             CCCc------ccCCCcCCCcEEEEee
Q 024306          189 VANL------VRGSWLKPGAVVLDVG  208 (269)
Q Consensus       189 ~p~~------i~~~~~~~g~vViDv~  208 (269)
                      .+..      +.+  ++++++|+|+.
T Consensus        81 ~~~~~~v~~~i~~--l~~~~~vv~~~  104 (335)
T 1txg_A           81 TDGVLPVMSRILP--YLKDQYIVLIS  104 (335)
T ss_dssp             GGGHHHHHHHHTT--TCCSCEEEECC
T ss_pred             hHHHHHHHHHHhc--CCCCCEEEEEc
Confidence            6431      233  77889999984

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.72  E-value=0.0012  Score=59.86  Aligned_cols=94  Identities=19%  Similarity=0.143  Sum_probs=59.1

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------CHh----
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------NPE----  174 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------~l~----  174 (269)
                      |+....+...+.+...--.|++|+|+|++|.+|..+++++...|++|+++.++..                  ++.    
T Consensus       141 ~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~  220 (342)
T 4eye_A          141 IANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVR  220 (342)
T ss_dssp             TTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHH
T ss_pred             hhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHH
Confidence            3333334455533333347999999999555699999999999999888766421                  111    


Q ss_pred             hhc--CCCCEEEeccCCCCc-ccCCCcCCCcEEEEeeec
Q 024306          175 QIT--SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       175 ~~~--~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~~  210 (269)
                      +..  +..|+||+++|.+.+ -.-+.++++-.++.+|..
T Consensus       221 ~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~~  259 (342)
T 4eye_A          221 EATGGAGVDMVVDPIGGPAFDDAVRTLASEGRLLVVGFA  259 (342)
T ss_dssp             HHTTTSCEEEEEESCC--CHHHHHHTEEEEEEEEEC---
T ss_pred             HHhCCCCceEEEECCchhHHHHHHHhhcCCCEEEEEEcc
Confidence            112  258999999997643 223467777777788754

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=96.71  E-value=0.0028  Score=57.17  Aligned_cols=36  Identities=19%  Similarity=0.369  Sum_probs=33.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHh--CCCEEEEEeC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQR--HHATVSIVHA  168 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~--~ga~Vti~~~  168 (269)
                      ++++++|+|.|++|.+|+.++..|++  +|++|+++.|
T Consensus         7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r   44 (362)
T 3sxp_A            7 ELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDK   44 (362)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred             hcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEEC
Confidence            57899999999999999999999999  8999999876

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.71  E-value=0.0031  Score=55.04  Aligned_cols=39  Identities=31%  Similarity=0.377  Sum_probs=35.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .+++||+++|.|+++-+|+++++.|+++|++|.++.|+.
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   45 (271)
T 3tzq_B            7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPE   45 (271)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            468899999999988889999999999999999998764

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.70  E-value=0.0019  Score=61.10  Aligned_cols=80  Identities=23%  Similarity=0.306  Sum_probs=56.4

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------------------CCHhhhc
Q 024306          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------KNPEQIT  177 (269)
Q Consensus       130 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------------------~~l~~~~  177 (269)
                      .+...+-.+|.|||.|.+ |.++|..|++ |.+|+++++..                                .++.+.+
T Consensus        30 ~~r~~~~mkIaVIGlG~m-G~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~  107 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYV-GLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAY  107 (432)
T ss_dssp             -----CCCEEEEECCSHH-HHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred             cccccCCCEEEEECcCHH-HHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHH
Confidence            334445568999999886 9999999987 99999997541                                2345678


Q ss_pred             CCCCEEEeccCCCC----------ccc------CCCcCCCcEEEEeeecCC
Q 024306          178 SEADIVIAAAGVAN----------LVR------GSWLKPGAVVLDVGTCPV  212 (269)
Q Consensus       178 ~~aDiVIsAtg~p~----------~i~------~~~~~~g~vViDv~~~~~  212 (269)
                      ++||+||.+++.|.          .+.      .. ++++++|||...-+.
T Consensus       108 ~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~p  157 (432)
T 3pid_A          108 RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPV  157 (432)
T ss_dssp             TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCT
T ss_pred             hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCCh
Confidence            89999999998651          010      12 688999999876543

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.70  E-value=0.011  Score=53.32  Aligned_cols=149  Identities=14%  Similarity=0.084  Sum_probs=99.9

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCcccccccc
Q 024306           22 SQTYVRNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF   98 (269)
Q Consensus        22 s~~y~~~~~~~~~~~Gi~~~~~~~~~~~---~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~   98 (269)
                      |-.=--+-..++.++|.++.++.-....   .-|-+.+.++-|+.-  +|+|.+-.|-..  ....+.+..       .+
T Consensus        49 STRTR~SFe~A~~~LGg~~i~l~~~~~s~~~kgEsl~DTarvls~~--~D~iviR~~~~~--~~~~la~~~-------~v  117 (299)
T 1pg5_A           49 STRTYLSFQKAIINLGGDVIGFSGEESTSVAKGENLADTIRMLNNY--SDGIVMRHKYDG--ASRFASEIS-------DI  117 (299)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEECC-------CCCHHHHHHHHHHH--CSEEEEEESSBT--HHHHHHHHC-------SS
T ss_pred             CcchHHhHHHHHHHhCCEEEEeCCCCcccccCCCCHHHHHHHHHHh--CCEEEEeCCChh--HHHHHHHhC-------CC
Confidence            4433445667999999999888643211   124567777777763  689999887443  223333221       13


Q ss_pred             ccceecccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC--cccHHHHHHHHHhC-CCEEEEEeCC-----
Q 024306           99 HPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRH-HATVSIVHAL-----  169 (269)
Q Consensus        99 ~~~n~g~l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~g--g~vg~~~a~~L~~~-ga~Vti~~~~-----  169 (269)
                      -.+|.|.      .+.+.||=+.+ ++.+.++. ..++|.+|+++|-+  +-|++.++..+... |++|+++...     
T Consensus       118 PVINaG~------g~~~HPtQ~LaDl~Ti~e~~-g~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~  190 (299)
T 1pg5_A          118 PVINAGD------GKHEHPTQAVIDIYTINKHF-NTIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRAR  190 (299)
T ss_dssp             CEEEEEE------TTTBCHHHHHHHHHHHHHHH-SCSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCC
T ss_pred             CEEeCCC------CCCcCcHHHHHHHHHHHHHh-CCcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCC
Confidence            3455422      34566998888 45555554 47999999999986  45799999999999 9999999543     


Q ss_pred             -------------CCCHhhhcCCCCEEEeccC
Q 024306          170 -------------TKNPEQITSEADIVIAAAG  188 (269)
Q Consensus       170 -------------t~~l~~~~~~aDiVIsAtg  188 (269)
                                   +.++.+.+++||+|.+-.-
T Consensus       191 ~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~  222 (299)
T 1pg5_A          191 KEILDELNYPVKEVENPFEVINEVDVLYVTRI  222 (299)
T ss_dssp             HHHHTTCCSCEEEESCGGGTGGGCSEEEEECC
T ss_pred             HHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCc
Confidence                         1356788999999996653

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.69  E-value=0.0021  Score=56.26  Aligned_cols=60  Identities=30%  Similarity=0.289  Sum_probs=46.0

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------C------Hh-------hhcCCCCEEEe
Q 024306          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------N------PE-------QITSEADIVIA  185 (269)
Q Consensus       130 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------~------l~-------~~~~~aDiVIs  185 (269)
                      ...+++||+++|.|+++-+|+++++.|+++|++|.++.+...           |      +.       +....-|++|+
T Consensus         8 ~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~   87 (269)
T 3vtz_A            8 HMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILVN   87 (269)
T ss_dssp             --CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CTTSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhccCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            345789999999999888899999999999999999876531           1      11       12236799998


Q ss_pred             ccCC
Q 024306          186 AAGV  189 (269)
Q Consensus       186 Atg~  189 (269)
                      ..|.
T Consensus        88 nAg~   91 (269)
T 3vtz_A           88 NAGI   91 (269)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            8884

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=96.69  E-value=0.01  Score=53.55  Aligned_cols=141  Identities=13%  Similarity=0.037  Sum_probs=97.9

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceec
Q 024306           28 NKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG  104 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~---~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g  104 (269)
                      +-..++.++|.++.++.-. +.   .-|-+.+.++-|+.-  +|+|.+-.|-.      ..+..+....   .+-.+|.|
T Consensus        53 SFe~A~~~LGg~~i~l~~~-~ss~~kgEsl~DTarvls~~--~D~iviR~~~~------~~~~~lA~~~---~vPVINag  120 (307)
T 3tpf_A           53 AFELAITELGGKALFLSSN-DLQLSRGEPVKDTARVIGAM--VDFVMMRVNKH------ETLLEFARYS---KAPVINAL  120 (307)
T ss_dssp             HHHHHHHHTTCEEEEECTT-TCCTTTSSCHHHHHHHHHHH--SSEEEEECSCH------HHHHHHHHHC---SSCEEEEE
T ss_pred             hHHHHHHHcCCeEEEcCcc-cccCCCCCCHHHHHHHHHHh--CCEEEEecCCh------HHHHHHHHhC---CCCEEeCC
Confidence            4567899999999887532 11   134577777777773  78999987732      2222221111   23345653


Q ss_pred             ccccCCCCCccccCCHHHHHHHHHHhCCCCc-cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------
Q 024306          105 NLAMRGREPLFIPCTPKGCIELLIRSGVEIM-GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------  170 (269)
Q Consensus       105 ~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~-gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------  170 (269)
                      .       +.+.||=+.+=+--++++...++ |++|+++|-++.|++.++..+...|++|+++....             
T Consensus       121 ~-------~~~HPtQaLaDl~Ti~e~~g~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~  193 (307)
T 3tpf_A          121 S-------ELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMK  193 (307)
T ss_dssp             C-------SSCCHHHHHHHHHHHHHTTCCGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHH
T ss_pred             C-------CCcCcHHHHHHHHHHHHHhCCCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHH
Confidence            2       24568877774444455555799 99999999999899999999999999999996532             


Q ss_pred             ------------CCHhhhcCCCCEEEecc
Q 024306          171 ------------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       171 ------------~~l~~~~~~aDiVIsAt  187 (269)
                                  .++.+.+++||+|.+-+
T Consensus       194 ~a~~~g~~~~~~~d~~eav~~aDvvyt~~  222 (307)
T 3tpf_A          194 QALISGAKISLGYDKFEALKDKDVVITDT  222 (307)
T ss_dssp             HHHHHTCEEEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHcCCeEEEEcCHHHHhcCCCEEEecC
Confidence                        35567889999999766

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.69  E-value=0.0015  Score=57.96  Aligned_cols=88  Identities=13%  Similarity=0.114  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC--------------------HhhhcCCC
Q 024306          121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN--------------------PEQITSEA  180 (269)
Q Consensus       121 ~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~--------------------l~~~~~~a  180 (269)
                      ..++..+.+.. --.|++|+|+|++|.+|..+++.+...|++|+.+.++...                    +.+.++.+
T Consensus       112 ~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~  190 (302)
T 1iz0_A          112 LTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGL  190 (302)
T ss_dssp             HHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSE
T ss_pred             HHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCc
Confidence            33455565555 4479999999996667999999999999998888764211                    11223568


Q ss_pred             CEEEeccCCCCc-ccCCCcCCCcEEEEeeec
Q 024306          181 DIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       181 DiVIsAtg~p~~-i~~~~~~~g~vViDv~~~  210 (269)
                      |+||+ +|.+.+ -.-+.++++-.++.++..
T Consensus       191 d~vid-~g~~~~~~~~~~l~~~G~~v~~g~~  220 (302)
T 1iz0_A          191 DLVLE-VRGKEVEESLGLLAHGGRLVYIGAA  220 (302)
T ss_dssp             EEEEE-CSCTTHHHHHTTEEEEEEEEEC---
T ss_pred             eEEEE-CCHHHHHHHHHhhccCCEEEEEeCC
Confidence            99999 887432 123456776677777754

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.69  E-value=0.0024  Score=54.43  Aligned_cols=37  Identities=30%  Similarity=0.452  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+.+++.|+++|++|.++.|.
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~   40 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRK   40 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCC
Confidence            4689999999998889999999999999999999876

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.68  E-value=0.0018  Score=54.11  Aligned_cols=52  Identities=21%  Similarity=0.192  Sum_probs=42.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------CHh----hhcCCCCEEEeccCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPE----QITSEADIVIAAAGV  189 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~l~----~~~~~aDiVIsAtg~  189 (269)
                      +|+|.|++|.+|+.++..|+++|++|+++.|...               |+.    +.+...|+||++.|.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   72 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV   72 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence            6999999888899999999999999999987621               111    457789999998885

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.68  E-value=0.0018  Score=57.11  Aligned_cols=54  Identities=15%  Similarity=0.129  Sum_probs=45.1

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------CHhhhcCCCCEEEeccCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------~l~~~~~~aDiVIsAtg~  189 (269)
                      +++|+|.|++|.+|+.++..|.++|.+|+++.|...                 ++.+.++++|+||...+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~   72 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYTLEDLINQLNDVDAVVHLAAT   72 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----CCEEEECCCCHHHHHHHTTTCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcccCCceEEEEccccHHHHHHhhcCCCEEEEcccc
Confidence            478999999999999999999999999999987622                 134567889999988774

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.68  E-value=0.003  Score=59.76  Aligned_cols=77  Identities=26%  Similarity=0.341  Sum_probs=54.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------CCHhh---------------hcCCCCEE
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------KNPEQ---------------ITSEADIV  183 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------~~l~~---------------~~~~aDiV  183 (269)
                      -.|.+..|||.|.+ |.|+|..|++.|.+|++++++.               +.+.+               -+++||+|
T Consensus         9 ~~~~~~~ViGlGyv-Glp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvv   87 (431)
T 3ojo_A            9 HHGSKLTVVGLGYI-GLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVF   87 (431)
T ss_dssp             ---CEEEEECCSTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEE
T ss_pred             ccCCccEEEeeCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEE
Confidence            36889999999886 9999999999999999997762               11211               14579999


Q ss_pred             EeccCCCCccc-----------------CCCcCCCcEEEEeeecC
Q 024306          184 IAAAGVANLVR-----------------GSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       184 IsAtg~p~~i~-----------------~~~~~~g~vViDv~~~~  211 (269)
                      |.++|.|.-.+                 ...+++|++|||...-+
T Consensus        88 ii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~  132 (431)
T 3ojo_A           88 IIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIA  132 (431)
T ss_dssp             EECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCC
T ss_pred             EEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCC
Confidence            99999764111                 12367888888877544

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.68  E-value=0.0016  Score=58.34  Aligned_cols=92  Identities=18%  Similarity=0.144  Sum_probs=61.3

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC------------------CCC-Hhhhc
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL------------------TKN-PEQIT  177 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~------------------t~~-l~~~~  177 (269)
                      |+....++..++..+ --.|.+|+|+|++|.+|..+++++...|++|+.+.+.                  ..+ +.+.+
T Consensus       135 ~~~~~ta~~al~~~~-~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~  213 (321)
T 3tqh_A          135 PTAGLTALQALNQAE-VKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAIS  213 (321)
T ss_dssp             HHHHHHHHHHHHHTT-CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHTCSEEEETTTSCHHHHCC
T ss_pred             hhHHHHHHHHHHhcC-CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHHcCCCEEEeCCCcchhhhhc
Confidence            333333455554333 3479999999855556999999999999987765332                  234 55666


Q ss_pred             CCCCEEEeccCCCCc-ccCCCcCCCcEEEEeee
Q 024306          178 SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  209 (269)
Q Consensus       178 ~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~  209 (269)
                      +.+|+||.++|.+.. -.-+.++++-.++.++.
T Consensus       214 ~g~D~v~d~~g~~~~~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          214 TPVDAVIDLVGGDVGIQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             SCEEEEEESSCHHHHHHHGGGEEEEEEEEECCS
T ss_pred             cCCCEEEECCCcHHHHHHHHhccCCCEEEEeCC
Confidence            788999999996543 22345677766766664

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=96.67  E-value=0.0021  Score=61.66  Aligned_cols=75  Identities=16%  Similarity=0.266  Sum_probs=56.6

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhhcC---CCCEEEeccCCCCc-
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQITS---EADIVIAAAGVANL-  192 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~~---~aDiVIsAtg~p~~-  192 (269)
                      -++|.|||.|.+ |.+++..|++.|.+|++.+++.                   .++.+.++   ++|+||.+++.+.. 
T Consensus         4 ~~kIgiIGlG~M-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   82 (484)
T 4gwg_A            4 QADIALIGLAVM-GQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAV   82 (484)
T ss_dssp             CBSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHH
T ss_pred             CCEEEEEChhHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHH
Confidence            357999999887 9999999999999999998763                   23344443   59999999987521 


Q ss_pred             ---cc--CCCcCCCcEEEEeeecC
Q 024306          193 ---VR--GSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       193 ---i~--~~~~~~g~vViDv~~~~  211 (269)
                         +.  ...+++|.+|||++...
T Consensus        83 ~~vl~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           83 DDFIEKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             HHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             HHHHHHHHHhcCCCCEEEEcCCCC
Confidence               21  23567899999988543

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.65  E-value=0.0015  Score=58.57  Aligned_cols=91  Identities=13%  Similarity=0.083  Sum_probs=60.9

Q ss_pred             HHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhh----hc
Q 024306          121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQ----IT  177 (269)
Q Consensus       121 ~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~----~~  177 (269)
                      ..+...+.+..---.|++|+|+|++|.+|..+++++...|++|+++.++.                   .++.+    .+
T Consensus       126 ~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~  205 (325)
T 3jyn_A          126 LTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELT  205 (325)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence            33444444333334699999999656679999999999999988876541                   12222    22


Q ss_pred             --CCCCEEEeccCCCCc-ccCCCcCCCcEEEEeeecC
Q 024306          178 --SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       178 --~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~~~  211 (269)
                        +..|+||+++|.+.+ -.-+.++++-.++.++...
T Consensus       206 ~~~g~Dvvid~~g~~~~~~~~~~l~~~G~iv~~g~~~  242 (325)
T 3jyn_A          206 DGKKCPVVYDGVGQDTWLTSLDSVAPRGLVVSFGNAS  242 (325)
T ss_dssp             TTCCEEEEEESSCGGGHHHHHTTEEEEEEEEECCCTT
T ss_pred             CCCCceEEEECCChHHHHHHHHHhcCCCEEEEEecCC
Confidence              258999999997433 2335678888888888653

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.65  E-value=0.0026  Score=60.38  Aligned_cols=73  Identities=21%  Similarity=0.234  Sum_probs=55.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------------CCHhhhcCCCCE
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------------KNPEQITSEADI  182 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------------~~l~~~~~~aDi  182 (269)
                      -++.|||.|-+ |.++|..|++.|.+|++++++.                                  .++.+.+++||+
T Consensus         9 ~~~~vIGlG~v-G~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDv   87 (446)
T 4a7p_A            9 VRIAMIGTGYV-GLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADA   87 (446)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSE
T ss_pred             eEEEEEcCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCE
Confidence            47999999886 9999999999999999997652                                  234467789999


Q ss_pred             EEeccCCCC----------ccc------CCCcCCCcEEEEeeec
Q 024306          183 VIAAAGVAN----------LVR------GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       183 VIsAtg~p~----------~i~------~~~~~~g~vViDv~~~  210 (269)
                      ||.++|.|.          ++.      ...++++++||+...-
T Consensus        88 vii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv  131 (446)
T 4a7p_A           88 VFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTV  131 (446)
T ss_dssp             EEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCC
T ss_pred             EEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence            999988662          111      1246788888887643

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.64  E-value=0.0038  Score=57.27  Aligned_cols=92  Identities=16%  Similarity=0.096  Sum_probs=62.4

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC--------------------Hhhh
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN--------------------PEQI  176 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~--------------------l~~~  176 (269)
                      ||....++..+++.++ -.|.+|+|+|+|+ +|..+++++..+|++|+.+.++...                    ..+.
T Consensus       177 ~~~~~tA~~al~~~~~-~~g~~VlV~GaG~-vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~  254 (369)
T 1uuf_A          177 LCAGITTYSPLRHWQA-GPGKKVGVVGIGG-LGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAH  254 (369)
T ss_dssp             GTHHHHHHHHHHHTTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTT
T ss_pred             hhhHHHHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHh
Confidence            3433334566665433 3689999999976 5999999999999998877654211                    1122


Q ss_pred             cCCCCEEEeccCCCCcc--cCCCcCCCcEEEEeeec
Q 024306          177 TSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       177 ~~~aDiVIsAtg~p~~i--~~~~~~~g~vViDv~~~  210 (269)
                      ...+|+||+++|.+..+  .-+.++++-.++.++..
T Consensus       255 ~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~  290 (369)
T 1uuf_A          255 LKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAP  290 (369)
T ss_dssp             TTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC
T ss_pred             hcCCCEEEECCCCHHHHHHHHHHhccCCEEEEeccC
Confidence            24689999999976533  23567777777777754

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.63  E-value=0.0024  Score=49.21  Aligned_cols=54  Identities=19%  Similarity=0.286  Sum_probs=40.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------C---Hh-hhcCCCCEEEeccCCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------N---PE-QITSEADIVIAAAGVA  190 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------~---l~-~~~~~aDiVIsAtg~p  190 (269)
                      +++++|+|+|.. |+.++..|.+.|.+|+++.++..                   +   +. ..+.++|+||.+++.+
T Consensus         4 ~m~i~IiG~G~i-G~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   80 (140)
T 1lss_A            4 GMYIIIAGIGRV-GYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE   80 (140)
T ss_dssp             -CEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred             CCEEEEECCCHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCc
Confidence            468999999775 99999999999999999976421                   1   11 1256789999998853

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.62  E-value=0.0023  Score=60.66  Aligned_cols=72  Identities=24%  Similarity=0.310  Sum_probs=53.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------------CCHhhhcCCCCE
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------------KNPEQITSEADI  182 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------------~~l~~~~~~aDi  182 (269)
                      .+|.|||.|.+ |.++|..|++.|.+|++++++.                                  .++.+.+++||+
T Consensus         3 mkI~VIG~G~v-G~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDv   81 (450)
T 3gg2_A            3 LDIAVVGIGYV-GLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADI   81 (450)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSE
T ss_pred             CEEEEECcCHH-HHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCE
Confidence            47999999886 9999999999999999997641                                  134456788999


Q ss_pred             EEeccCCCC---------cc---c---CCCcCCCcEEEEeee
Q 024306          183 VIAAAGVAN---------LV---R---GSWLKPGAVVLDVGT  209 (269)
Q Consensus       183 VIsAtg~p~---------~i---~---~~~~~~g~vViDv~~  209 (269)
                      ||.+++.|.         .+   -   ...++++++|++...
T Consensus        82 ViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ST  123 (450)
T 3gg2_A           82 IFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKST  123 (450)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             EEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeee
Confidence            999998762         11   0   113567888887764

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=96.62  E-value=0.022  Score=51.44  Aligned_cols=141  Identities=13%  Similarity=0.118  Sum_probs=94.8

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC--CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceecc
Q 024306           28 NKIKACEEVGIKSIVTEFADGC--TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGN  105 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~--~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~  105 (269)
                      +-..+++++|.++.++.-....  .-|-+.+.++-|+.-  +|+|.+-.|-.      ..+..+....   .+-.+|.| 
T Consensus        56 SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~--~D~iviR~~~~------~~~~~lA~~~---~vPVINa~-  123 (307)
T 2i6u_A           56 SFELGIAQLGGHAVVVDSGSTQLGRDETLQDTAKVLSRY--VDAIVWRTFGQ------ERLDAMASVA---TVPVINAL-  123 (307)
T ss_dssp             HHHHHHHHTTCEEEEEEGGGSGGGGTCCHHHHHHHHHHH--EEEEEEECSSH------HHHHHHHHHC---SSCEEESC-
T ss_pred             HHHHHHHHcCCeEEEECCccccCCCCCCHHHHHHHHHHh--CCEEEEecCCh------hHHHHHHhhC---CCCEEcCC-
Confidence            3567899999999988642210  123466666666663  67888887732      2222221111   23345632 


Q ss_pred             cccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCCC-------------
Q 024306          106 LAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHALT-------------  170 (269)
Q Consensus       106 l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~t-------------  170 (269)
                            .+.+.||=+.+ ++.+.++. ..++|.+|+++|-+ .-|++.++..+...|++|+++....             
T Consensus       124 ------~~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~  196 (307)
T 2i6u_A          124 ------SDEFHPCQVLADLQTIAERK-GALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAER  196 (307)
T ss_dssp             ------CSSCCHHHHHHHHHHHHHHH-SCCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHH
T ss_pred             ------CCCcCccHHHHHHHHHHHHh-CCcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHH
Confidence                  24566998887 44555544 47999999999997 6679999999999999999996432             


Q ss_pred             ------------CCHhhhcCCCCEEEecc
Q 024306          171 ------------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       171 ------------~~l~~~~~~aDiVIsAt  187 (269)
                                  .++.+.+++||+|.+-+
T Consensus       197 ~a~~~G~~~~~~~d~~eav~~aDvvy~~~  225 (307)
T 2i6u_A          197 RAQDTGASVTVTADAHAAAAGADVLVTDT  225 (307)
T ss_dssp             HHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHcCCeEEEEECHHHHhcCCCEEEecc
Confidence                        34567899999999743

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=96.61  E-value=0.023  Score=51.26  Aligned_cols=148  Identities=11%  Similarity=0.084  Sum_probs=97.9

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCcccccccc
Q 024306           22 SQTYVRNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF   98 (269)
Q Consensus        22 s~~y~~~~~~~~~~~Gi~~~~~~~~~~~---~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~   98 (269)
                      |-.=--+-..++.++|.++.++.-+.+.   .-|-+.+.++-|..-  +|+|.+--|-..  ....+.+..       .+
T Consensus        51 STRTR~SFe~A~~~LGg~~i~l~~~~~ss~~kgEsl~DTarvls~~--~D~iviR~~~~~--~~~~lA~~~-------~v  119 (306)
T 4ekn_B           51 STRTRLSFETAMKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGY--ADIIVLRHPSEG--AARLASEYS-------QV  119 (306)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECCCTTTTSSSSCCHHHHHHHHHHH--CSEEEEECSSTT--HHHHHHHHC-------SS
T ss_pred             ChhHHhhHHHHHHHcCCEEEEcCCcccccCCCCCCHHHHHHHHHHh--CcEEEEEcCChH--HHHHHHHhC-------CC
Confidence            3333334667899999999887431221   124466666666663  589999888543  223332222       12


Q ss_pred             ccceecccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC--cccHHHHHHHHHhC-CCEEEEEeCC-----
Q 024306           99 HPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRH-HATVSIVHAL-----  169 (269)
Q Consensus        99 ~~~n~g~l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~g--g~vg~~~a~~L~~~-ga~Vti~~~~-----  169 (269)
                      -.+|.|      ..+.+.||=+.+ ++.+.++.+ .++|.+|+++|-+  +-|++.++..+... |++|+++...     
T Consensus       120 PVINag------~g~~~HPtQ~LaDl~Ti~e~~g-~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~  192 (306)
T 4ekn_B          120 PIINAG------DGSNQHPTQTLLDLYTIMREIG-RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLP  192 (306)
T ss_dssp             CEEESC------SSSSCCHHHHHHHHHHHHHHHS-CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCC
T ss_pred             CEEeCC------CCCCcCcHHHHHHHHHHHHHhC-CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccC
Confidence            334532      234566998887 445555554 7999999999986  45699999999999 9999998543     


Q ss_pred             ----------------CCCHhhhcCCCCEEEecc
Q 024306          170 ----------------TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       170 ----------------t~~l~~~~~~aDiVIsAt  187 (269)
                                      +.++.+.+++||+|++..
T Consensus       193 ~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~  226 (306)
T 4ekn_B          193 KDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTR  226 (306)
T ss_dssp             HHHHHHHHHTTCCEEEESCGGGCCTTCSEEEECC
T ss_pred             HHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeCC
Confidence                            246678899999999764

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.61  E-value=0.002  Score=55.77  Aligned_cols=37  Identities=27%  Similarity=0.325  Sum_probs=34.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+++++.|+++|++|.++.|.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   41 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADID   41 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999998888999999999999999998765

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.60  E-value=0.0019  Score=56.53  Aligned_cols=54  Identities=19%  Similarity=0.218  Sum_probs=43.3

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------C------------------------CHhhhcCCCCEEE
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------K------------------------NPEQITSEADIVI  184 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------~------------------------~l~~~~~~aDiVI  184 (269)
                      +++|+|.|++|.+|+.++..|.++|++|+++.|..       .                        ++.+.++.+|+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            57899999988889999999999999999887753       0                        1235567789999


Q ss_pred             eccCC
Q 024306          185 AAAGV  189 (269)
Q Consensus       185 sAtg~  189 (269)
                      ++++.
T Consensus        82 ~~a~~   86 (307)
T 2gas_A           82 CAAGR   86 (307)
T ss_dssp             ECSSS
T ss_pred             ECCcc
Confidence            88774

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.60  E-value=0.0018  Score=56.55  Aligned_cols=58  Identities=26%  Similarity=0.276  Sum_probs=45.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------CH-------------hhhcCCCCEEEeccC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------NP-------------EQITSEADIVIAAAG  188 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------~l-------------~~~~~~aDiVIsAtg  188 (269)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|...          ++             .+....-|++|+..|
T Consensus        24 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD~lvnnAg  103 (266)
T 3uxy_A           24 QGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADLHLPGDLREAAYADGLPGAVAAGLGRLDIVVNNAG  103 (266)
T ss_dssp             --CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCSEECCCCTTSHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             hCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhhhccCcCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            3578999999999888899999999999999999877531          11             112246799999888


Q ss_pred             C
Q 024306          189 V  189 (269)
Q Consensus       189 ~  189 (269)
                      .
T Consensus       104 ~  104 (266)
T 3uxy_A          104 V  104 (266)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=96.59  E-value=0.017  Score=52.77  Aligned_cols=147  Identities=12%  Similarity=0.064  Sum_probs=98.7

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCcccccccc
Q 024306           22 SQTYVRNKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGF   98 (269)
Q Consensus        22 s~~y~~~~~~~~~~~Gi~~~~~~~~~~~---~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~   98 (269)
                      |-.=--+-..++.++|.++.++.-. +.   .-|-+.+.++-|+.-  +|+|.+--|-.      ..+..+....   ++
T Consensus        56 STRTR~SFE~A~~~LGg~~i~l~~~-~ss~~kgEsl~DTarvLs~~--~D~IviR~~~~------~~~~~lA~~s---~v  123 (335)
T 1dxh_A           56 STRTRCAFEVAAYDQGANVTYIDPN-SSQIGHKESMKDTARVLGRM--YDAIEYRGFKQ------EIVEELAKFA---GV  123 (335)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECTT-TCCBTTTBCHHHHHHHHHHH--CSEEEEECSCH------HHHHHHHHHS---SS
T ss_pred             CcchHHHHHHHHHHcCCeEEEECCc-cccCcCCCcHHHHHHHHHhh--CCEEEEecCCh------hHHHHHHHhC---CC
Confidence            3333334567899999999988632 21   134577777777763  68999887732      2222221111   23


Q ss_pred             ccceecccccCCCCCccccCCHHHHHHHHHHhCC-CCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC-------
Q 024306           99 HPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGV-EIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL-------  169 (269)
Q Consensus        99 ~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~-~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~-------  169 (269)
                      -.+|.|       ++.+.||=+.+=+--++++.. .++|.+++++|-+ ..|++.++..+...|++|+++...       
T Consensus       124 PVINa~-------~~~~HPtQ~LaDl~Ti~e~~g~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~~  196 (335)
T 1dxh_A          124 PVFNGL-------TDEYHPTQMLADVLTMREHSDKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDE  196 (335)
T ss_dssp             CEEEEE-------CSSCCHHHHHHHHHHHHHTCSSCGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHH
T ss_pred             CEEcCC-------CCCCCcHHHHHHHHHHHHHcCCCcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCHH
Confidence            345642       245669888884444444444 8999999999997 567999999999999999999543       


Q ss_pred             ------------------CCCHhhhcCCCCEEEecc
Q 024306          170 ------------------TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       170 ------------------t~~l~~~~~~aDiVIsAt  187 (269)
                                        +.++.+.+++||+|.+-+
T Consensus       197 ~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~  232 (335)
T 1dxh_A          197 FVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDV  232 (335)
T ss_dssp             HHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             HHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeCC
Confidence                              235667899999999733

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.59  E-value=0.0026  Score=61.19  Aligned_cols=73  Identities=21%  Similarity=0.247  Sum_probs=55.6

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhhcCC---CCEEEeccCCCC--
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQITSE---ADIVIAAAGVAN--  191 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~~~---aDiVIsAtg~p~--  191 (269)
                      .++|.|||.|.+ |.+++..|++.|.+|++.+|+.                   .++.+.+++   +|+||.+++.+.  
T Consensus        10 ~~~IgvIGlG~M-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   88 (497)
T 2p4q_A           10 SADFGLIGLAVM-GQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPV   88 (497)
T ss_dssp             CCSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHH
T ss_pred             CCCEEEEeeHHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHH
Confidence            357999999887 9999999999999999998753                   134444554   999999998742  


Q ss_pred             --ccc--CCCcCCCcEEEEeee
Q 024306          192 --LVR--GSWLKPGAVVLDVGT  209 (269)
Q Consensus       192 --~i~--~~~~~~g~vViDv~~  209 (269)
                        .+.  ...+++|.+|||++.
T Consensus        89 ~~vl~~l~~~l~~g~iIId~s~  110 (497)
T 2p4q_A           89 DALINQIVPLLEKGDIIIDGGN  110 (497)
T ss_dssp             HHHHHHHGGGCCTTCEEEECSC
T ss_pred             HHHHHHHHHhCCCCCEEEECCC
Confidence              121  134678999999874

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=96.58  E-value=0.044  Score=50.10  Aligned_cols=140  Identities=9%  Similarity=0.053  Sum_probs=94.0

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceec
Q 024306           28 NKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG  104 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~---~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g  104 (269)
                      +-..++.++|.++.++.-. +.   .-|-+.+.++-|+.-  +|+|.+--|-.      ..+..+....   ++-.+|.|
T Consensus        80 SFE~A~~~LGg~~i~l~~~-~ssl~kgEsl~DTarvLs~~--~D~IviR~~~~------~~~~~lA~~~---~vPVINag  147 (339)
T 4a8t_A           80 SFETAMEQLGGHGEYLAPG-QIQLGGHETIEDTSRVLSRL--VDILMARVERH------HSIVDLANCA---TIPVINGM  147 (339)
T ss_dssp             HHHHHHHHTTCEEEEECCC--CCSSSSSCHHHHHHHHHHH--CSEEEEECSSH------HHHHHHHHHC---SSCEEECC
T ss_pred             HHHHHHHHcCCeEEEeCcc-cccCCCCcCHHHHHHHHHHh--CCEEEEecCcH------HHHHHHHHhC---CCCEEECC
Confidence            3567899999999987421 11   134466777777663  78998887632      2222221111   23345643


Q ss_pred             ccccCCCCCccccCCHHHH-HHHHHHh--CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------
Q 024306          105 NLAMRGREPLFIPCTPKGC-IELLIRS--GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------  170 (269)
Q Consensus       105 ~l~~g~~~~~~~p~t~~g~-~~~l~~~--~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------  170 (269)
                             ++.+.||=+.+= +.+.++.  +.+++|++|+++|-++.|++.++..+...|++|+++....           
T Consensus       148 -------~~~~HPtQaLaDl~Ti~e~~~~G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~  220 (339)
T 4a8t_A          148 -------SDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKL  220 (339)
T ss_dssp             -------CSSCCHHHHHHHHHHHHHTCCTTCCGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHH
T ss_pred             -------CCCcCcHHHHHHHHHHHHHhhcCCCCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHH
Confidence                   244668877774 4444444  3379999999999998899999999999999999996542           


Q ss_pred             --------------CCHhhhcCCCCEEEecc
Q 024306          171 --------------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       171 --------------~~l~~~~~~aDiVIsAt  187 (269)
                                    .++. .+++||+|++-+
T Consensus       221 ~~~a~~~g~~v~~~~d~~-av~~aDvvytd~  250 (339)
T 4a8t_A          221 AKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  250 (339)
T ss_dssp             HHHHHHHCCEEEEECCGG-GGTTCSEEEECC
T ss_pred             HHHHHHcCCEEEEECChh-HHcCCCEEEecC
Confidence                          2455 789999999743

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.58  E-value=0.0015  Score=58.72  Aligned_cols=94  Identities=15%  Similarity=0.087  Sum_probs=61.9

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------CHhhh
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQI  176 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~~~  176 (269)
                      |+...-++..|.+..---.|++|+|+|++|.+|..+++++...|++|+.+.++..                    ++.+.
T Consensus       131 ~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  210 (336)
T 4b7c_A          131 GMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAG  210 (336)
T ss_dssp             SHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHH
T ss_pred             ccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHH
Confidence            3333445566644433457999999999555699999999999999888865421                    11111


Q ss_pred             c-----CCCCEEEeccCCCCc-ccCCCcCCCcEEEEeeec
Q 024306          177 T-----SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       177 ~-----~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~~  210 (269)
                      +     ...|++|+++|.+.+ -.-+.++++-.++.+|..
T Consensus       211 ~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~iv~~G~~  250 (336)
T 4b7c_A          211 LKRECPKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAI  250 (336)
T ss_dssp             HHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCG
T ss_pred             HHHhcCCCceEEEECCCcchHHHHHHHHhhCCEEEEEeec
Confidence            1     247888888885322 223467777777777754

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.58  E-value=0.0088  Score=57.23  Aligned_cols=75  Identities=25%  Similarity=0.241  Sum_probs=56.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhC-CC-EEEEEeCCCC----C---H--------------------------------hh
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRH-HA-TVSIVHALTK----N---P--------------------------------EQ  175 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~-ga-~Vti~~~~t~----~---l--------------------------------~~  175 (269)
                      ++|.|||.|-+ |.++|..|++. |. +|+++++...    .   +                                .+
T Consensus        19 mkIaVIGlG~m-G~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd~e   97 (478)
T 3g79_A           19 KKIGVLGMGYV-GIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDFS   97 (478)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESCGG
T ss_pred             CEEEEECcCHH-HHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCcHH
Confidence            68999999886 99999999999 99 9999976643    0   0                                23


Q ss_pred             hcCCCCEEEeccCCCCccc----C-------------CCcCCCcEEEEeeecCC
Q 024306          176 ITSEADIVIAAAGVANLVR----G-------------SWLKPGAVVLDVGTCPV  212 (269)
Q Consensus       176 ~~~~aDiVIsAtg~p~~i~----~-------------~~~~~g~vViDv~~~~~  212 (269)
                      .+++||+||.++|.|.-.+    +             ..+++|++|||...-+.
T Consensus        98 a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~p  151 (478)
T 3g79_A           98 RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITP  151 (478)
T ss_dssp             GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCT
T ss_pred             HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCCh
Confidence            4678999999998763111    1             13578999999875554

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.58  E-value=0.0024  Score=54.36  Aligned_cols=70  Identities=20%  Similarity=0.197  Sum_probs=51.6

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEE-EeCCCC---------------CHhhhcCCCCEEEeccCCCC---c---c
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSI-VHALTK---------------NPEQITSEADIVIAAAGVAN---L---V  193 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti-~~~~t~---------------~l~~~~~~aDiVIsAtg~p~---~---i  193 (269)
                      -.+|.|||+|.+ |.+++..|.+.|.+|++ ++|+..               +..+.++++|+||.+++...   .   +
T Consensus        23 mmkI~IIG~G~m-G~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l  101 (220)
T 4huj_A           23 MTTYAIIGAGAI-GSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYDSIADIVTQV  101 (220)
T ss_dssp             SCCEEEEECHHH-HHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGGGHHHHHTTC
T ss_pred             CCEEEEECCCHH-HHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChHHHHHHHHHh
Confidence            368999999886 99999999999999998 665532               12344688999999997322   1   2


Q ss_pred             cCCCcCCCcEEEEeee
Q 024306          194 RGSWLKPGAVVLDVGT  209 (269)
Q Consensus       194 ~~~~~~~g~vViDv~~  209 (269)
                      .+  + ++.+|+|+.-
T Consensus       102 ~~--~-~~~ivi~~~~  114 (220)
T 4huj_A          102 SD--W-GGQIVVDASN  114 (220)
T ss_dssp             SC--C-TTCEEEECCC
T ss_pred             hc--c-CCCEEEEcCC
Confidence            22  3 5789999883

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=96.56  E-value=0.0038  Score=56.28  Aligned_cols=70  Identities=19%  Similarity=0.220  Sum_probs=52.2

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------------CCHhhhcCCCCEEEeccCCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------------KNPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------------~~l~~~~~~aDiVIsAtg~p  190 (269)
                      .-+|.|||+|.+ |.+++..|++.|.+|++++|+.                         .+..+ +.++|+||.+++.+
T Consensus        14 ~~kI~iIG~G~m-G~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~~   91 (335)
T 1z82_A           14 EMRFFVLGAGSW-GTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPVQ   91 (335)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCGG
T ss_pred             CCcEEEECcCHH-HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCHH
Confidence            357999999886 9999999999999999998752                         12334 67899999999853


Q ss_pred             Cc--ccCCCcC-CCcEEEEee
Q 024306          191 NL--VRGSWLK-PGAVVLDVG  208 (269)
Q Consensus       191 ~~--i~~~~~~-~g~vViDv~  208 (269)
                      ..  +-.+ ++ ++.+||++.
T Consensus        92 ~~~~v~~~-l~~~~~~vv~~~  111 (335)
T 1z82_A           92 YIREHLLR-LPVKPSMVLNLS  111 (335)
T ss_dssp             GHHHHHTT-CSSCCSEEEECC
T ss_pred             HHHHHHHH-hCcCCCEEEEEe
Confidence            31  1111 22 688999986

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.56  E-value=0.01  Score=53.94  Aligned_cols=140  Identities=14%  Similarity=0.146  Sum_probs=96.0

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceec
Q 024306           28 NKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG  104 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~---~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g  104 (269)
                      +-..++.++|.++.++.-. +.   .-|-+.+.++-|+.-  +|+|.+--|-.      ..+..+...   -.+-.+|.|
T Consensus        65 SFE~A~~~LGg~~i~l~~~-~ss~~kgEsl~DTarvLs~~--~D~iviR~~~~------~~~~~lA~~---~~vPVINag  132 (323)
T 3gd5_A           65 SFTVAMYQLGGQVIDLSPS-NTQVGRGEPVRDTARVLGRY--VDGLAIRTFAQ------TELEEYAHY---AGIPVINAL  132 (323)
T ss_dssp             HHHHHHHHTTCEEEEC-----------CCHHHHHHHHTTT--CSEEEEECSSH------HHHHHHHHH---HCSCEEEEE
T ss_pred             hHHHHHHHcCCeEEEeCcc-cccCCCCCCHHHHHHHHHHh--CCEEEEecCCh------hHHHHHHHh---CCCCEEeCC
Confidence            4567899999999876421 11   135588888888873  89999987732      222222111   123345653


Q ss_pred             ccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------
Q 024306          105 NLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------  170 (269)
Q Consensus       105 ~l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------  170 (269)
                      .       +.+.||=+.+ ++.+.++.+ .++|.+|+++|-++.|++.++..+...|++|+++....             
T Consensus       133 ~-------~~~HPtQaLaDl~Ti~e~~g-~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~  204 (323)
T 3gd5_A          133 T-------DHEHPCQVVADLLTIRENFG-RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASE  204 (323)
T ss_dssp             C-------SSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHH
T ss_pred             C-------CCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHH
Confidence            2       3456887777 455555554 79999999999998899999999999999999996432             


Q ss_pred             ------------CCHhhhcCCCCEEEecc
Q 024306          171 ------------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       171 ------------~~l~~~~~~aDiVIsAt  187 (269)
                                  .++.+.+++||+|++-+
T Consensus       205 ~a~~~g~~v~~~~d~~eav~~aDvvyt~~  233 (323)
T 3gd5_A          205 IAGRTGAEVQILRDPFEAARGAHILYTDV  233 (323)
T ss_dssp             HHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHcCCeEEEECCHHHHhcCCCEEEEec
Confidence                        35667899999999654

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.56  E-value=0.014  Score=53.14  Aligned_cols=146  Identities=15%  Similarity=0.094  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCC--CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccc
Q 024306           22 SQTYVRNKIKACEEVGIKSIVTEFADGC--TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH   99 (269)
Q Consensus        22 s~~y~~~~~~~~~~~Gi~~~~~~~~~~~--~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~   99 (269)
                      |-.=--+-..++.++|.++.++.-....  .-|-+.+.++-|+.-  +|+|.+--|-.      ..+..+....   ++-
T Consensus        69 STRTR~SFE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~--~D~iviR~~~~------~~~~~lA~~~---~vP  137 (325)
T 1vlv_A           69 STRTRLAFETAFAEEGGHPIFLSPNDIHLGAKESLEDTARVLGRM--VDAIMFRGYKQ------ETVEKLAEYS---GVP  137 (325)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHTT--CSEEEEESSCH------HHHHHHHHHH---CSC
T ss_pred             CcchHHHHHHHHHHcCCeEEEECCccccCCCCcCHHHHHHHHHHh--CCEEEEECCCh------HHHHHHHHhC---CCC
Confidence            3333334667899999999988632210  134577888888774  78999987732      2222221111   233


Q ss_pred             cceecccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC--------
Q 024306          100 PLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL--------  169 (269)
Q Consensus       100 ~~n~g~l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~--------  169 (269)
                      .+|.     +  ++.+.||=+.+ ++.+.++. ..++|.+|+++|-+ .-|++.++..|...|++|+++...        
T Consensus       138 VINa-----~--~~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~  209 (325)
T 1vlv_A          138 VYNG-----L--TDEFHPTQALADLMTIEENF-GRLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDV  209 (325)
T ss_dssp             EEES-----C--CSSCCHHHHHHHHHHHHHHH-SCSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHH
T ss_pred             EEeC-----C--CCCCCcHHHHHHHHHHHHHh-CCcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHH
Confidence            4553     1  23566998887 45555555 47999999999997 567999999999999999999543        


Q ss_pred             -----------------CCCHhhhcCCCCEEEec
Q 024306          170 -----------------TKNPEQITSEADIVIAA  186 (269)
Q Consensus       170 -----------------t~~l~~~~~~aDiVIsA  186 (269)
                                       +.++.+.+++||+|.+-
T Consensus       210 ~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~  243 (325)
T 1vlv_A          210 FKRCQEIVKETDGSVSFTSNLEEALAGADVVYTD  243 (325)
T ss_dssp             HHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEec
Confidence                             23566789999999964

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=96.55  E-value=0.0061  Score=55.76  Aligned_cols=76  Identities=20%  Similarity=0.167  Sum_probs=51.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------------CCHhhhc---CCCCEEEeccCCCCc
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------------KNPEQIT---SEADIVIAAAGVANL  192 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------------~~l~~~~---~~aDiVIsAtg~p~~  192 (269)
                      -.|++|+|.|++|.+|..+++++...|++|+.+.+..                  .++.+.+   ..+|+||+++|.+..
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~  261 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTE  261 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeChHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhh
Confidence            4799999999755679999999999999977664321                  1222222   357888988887621


Q ss_pred             -c--cCCCcCCCcEEEEeee
Q 024306          193 -V--RGSWLKPGAVVLDVGT  209 (269)
Q Consensus       193 -i--~~~~~~~g~vViDv~~  209 (269)
                       +  .-+.++++-.++.++.
T Consensus       262 ~~~~~~~~l~~~G~iv~~g~  281 (375)
T 2vn8_A          262 TWAPDFLKKWSGATYVTLVT  281 (375)
T ss_dssp             HHGGGGBCSSSCCEEEESCC
T ss_pred             hhHHHHHhhcCCcEEEEeCC
Confidence             2  2235677777777774

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=96.55  E-value=0.0026  Score=54.77  Aligned_cols=37  Identities=27%  Similarity=0.321  Sum_probs=33.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+++++.|+++|++|.++.++
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~   39 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDIN   39 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998888999999999999999998765

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.55  E-value=0.0071  Score=55.01  Aligned_cols=93  Identities=15%  Similarity=0.224  Sum_probs=63.1

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------CHhh
Q 024306          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQ  175 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~~  175 (269)
                      +||....++..+++.++ -.|++|+|+|+|+ +|..+++++..+|++|+.+.+...                    ++.+
T Consensus       161 l~~~~~ta~~~l~~~~~-~~g~~VlV~GaG~-vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~  238 (360)
T 1piw_A          161 LLCGGLTVYSPLVRNGC-GPGKKVGIVGLGG-IGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGE  238 (360)
T ss_dssp             GGTHHHHHHHHHHHTTC-STTCEEEEECCSH-HHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHH
T ss_pred             hhhhHHHHHHHHHHcCC-CCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHH
Confidence            34544445666665333 3689999999955 599999999999999888765432                    2222


Q ss_pred             hc-CCCCEEEeccCC--CCccc--CCCcCCCcEEEEeeec
Q 024306          176 IT-SEADIVIAAAGV--ANLVR--GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       176 ~~-~~aDiVIsAtg~--p~~i~--~~~~~~g~vViDv~~~  210 (269)
                      .+ ..+|+||.++|.  +..+.  -+.++++-.++.++..
T Consensus       239 ~~~~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~  278 (360)
T 1piw_A          239 KYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIP  278 (360)
T ss_dssp             HSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCC
T ss_pred             HhhcCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecCC
Confidence            22 358999999987  54432  3457777777777754

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.55  E-value=0.0012  Score=59.37  Aligned_cols=78  Identities=19%  Similarity=0.224  Sum_probs=55.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhh----hc--CCCCEEEeccC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQ----IT--SEADIVIAAAG  188 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~----~~--~~aDiVIsAtg  188 (269)
                      -.|++|+|+|++|.+|..+++++..+|++|+++.++.                   .++.+    ..  +..|+||+++|
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g  226 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVG  226 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCC
Confidence            4799999999656679999999999999988876641                   12222    22  24899999998


Q ss_pred             CCCc-ccCCCcCCCcEEEEeeecC
Q 024306          189 VANL-VRGSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       189 ~p~~-i~~~~~~~g~vViDv~~~~  211 (269)
                      .+.+ -.-+.++++-.++.+|...
T Consensus       227 ~~~~~~~~~~l~~~G~iv~~G~~~  250 (334)
T 3qwb_A          227 KDTFEISLAALKRKGVFVSFGNAS  250 (334)
T ss_dssp             GGGHHHHHHHEEEEEEEEECCCTT
T ss_pred             hHHHHHHHHHhccCCEEEEEcCCC
Confidence            6432 2234677877888888643

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.54  E-value=0.0032  Score=54.77  Aligned_cols=57  Identities=14%  Similarity=0.183  Sum_probs=45.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------C------Hhhhc-------CCCCEEEeccCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------N------PEQIT-------SEADIVIAAAGV  189 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------~------l~~~~-------~~aDiVIsAtg~  189 (269)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|...          |      +.+.+       ...|+||+..|.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~   84 (264)
T 2dtx_A            5 DLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGI   84 (264)
T ss_dssp             GGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCCSCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCcccCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            478999999999988999999999999999999877521          1      12222       368999988884

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=96.53  E-value=0.0037  Score=59.41  Aligned_cols=74  Identities=22%  Similarity=0.269  Sum_probs=53.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCC---------------------------------CCHhhhcCCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALT---------------------------------KNPEQITSEAD  181 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~t---------------------------------~~l~~~~~~aD  181 (269)
                      .+|.|||.|.+ |.+++..|++.  |.+|++++++.                                 .++.+.+++||
T Consensus         6 mkI~VIG~G~m-G~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aD   84 (467)
T 2q3e_A            6 KKICCIGAGYV-GGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEAD   84 (467)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred             cEEEEECCCHH-HHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCC
Confidence            47999999886 99999999998  78999997642                                 12234567799


Q ss_pred             EEEeccCCCCccc--------------------CCCcCCCcEEEEeeecC
Q 024306          182 IVIAAAGVANLVR--------------------GSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       182 iVIsAtg~p~~i~--------------------~~~~~~g~vViDv~~~~  211 (269)
                      +||.+++.|.-.+                    ...++++++|+|....+
T Consensus        85 vViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~  134 (467)
T 2q3e_A           85 LVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVP  134 (467)
T ss_dssp             EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCC
T ss_pred             EEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCC
Confidence            9999988654211                    12357788999875443

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=96.52  E-value=0.0037  Score=59.80  Aligned_cols=54  Identities=19%  Similarity=0.219  Sum_probs=45.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------CHhhhcCCCCEEEeccCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------~l~~~~~~aDiVIsAtg~  189 (269)
                      +++|+|.|++|.+|+.++..|.++|.+|+++.|...           .+.+.+.++|+||+..+.
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~~~~~~~~l~~~D~Vih~A~~  211 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPLNPASDLLDGADVLVHLAGE  211 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCTTSCCTTTTTTCSEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeecccchhHHhcCCCCEEEECCCC
Confidence            789999999999999999999999999999987632           234667889999988774

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.52  E-value=0.0044  Score=58.49  Aligned_cols=37  Identities=22%  Similarity=0.296  Sum_probs=34.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +++||+|.|||.|++ |+++|+.|.++|++|++++.+.
T Consensus         6 ~~~~k~v~viG~G~s-G~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            6 TFENKKVLVLGLARS-GEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTTTCEEEEECCTTT-HHHHHHHHHHTTCEEEEEESSC
T ss_pred             hcCCCEEEEEeeCHH-HHHHHHHHHhCCCEEEEEeCCc
Confidence            578999999999998 9999999999999999998753

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.52  E-value=0.0027  Score=60.54  Aligned_cols=72  Identities=21%  Similarity=0.280  Sum_probs=55.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------------CCHhhhcCC---CCEEEeccCCCC----
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------------KNPEQITSE---ADIVIAAAGVAN----  191 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------------~~l~~~~~~---aDiVIsAtg~p~----  191 (269)
                      ++|.|||.|.+ |.+++..|++.|.+|++++|+.                  .++.+.+++   +|+||.+++.+.    
T Consensus         6 ~~IgvIG~G~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~   84 (474)
T 2iz1_A            6 ANFGVVGMAVM-GKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDA   84 (474)
T ss_dssp             BSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHH
T ss_pred             CcEEEEeeHHH-HHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHH
Confidence            57999999886 9999999999999999998752                  234455554   999999998742    


Q ss_pred             ccc--CCCcCCCcEEEEeee
Q 024306          192 LVR--GSWLKPGAVVLDVGT  209 (269)
Q Consensus       192 ~i~--~~~~~~g~vViDv~~  209 (269)
                      .+.  ...+++|.+|||++.
T Consensus        85 vl~~l~~~l~~g~iiId~s~  104 (474)
T 2iz1_A           85 TIKSLLPLLDIGDILIDGGN  104 (474)
T ss_dssp             HHHHHGGGCCTTCEEEECSC
T ss_pred             HHHHHHhhCCCCCEEEECCC
Confidence            121  235678899999874

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.51  E-value=0.013  Score=53.01  Aligned_cols=140  Identities=12%  Similarity=0.120  Sum_probs=97.1

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceec
Q 024306           28 NKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG  104 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~---~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g  104 (269)
                      +-..++.++|.++.++.-. +.   .-|-+.+.++-|+.-  +|+|.+--|-.      ..+..+....   .+-.+|.|
T Consensus        62 SFE~A~~~LGg~~i~l~~~-~ss~~kgEsl~DTarvls~~--~D~iviR~~~~------~~~~~lA~~~---~vPVINag  129 (309)
T 4f2g_A           62 SFEAGIFQLGGHAVFMSTR-DTQLGRGEPVEDSAQVISRM--VDIIMIRTFEQ------DIIQRFAENS---RVPVINGL  129 (309)
T ss_dssp             HHHHHHHHTTCEEEEECCS-SCEETBEECHHHHHHHHHHH--CSEEEEECSCH------HHHHHHHHTC---SSCEEEEE
T ss_pred             hHHHHHHHcCCeEEEcCcc-cccCCCCCCHHHHHHHHHHh--CCEEEEecCCH------HHHHHHHHhC---CCCEEECC
Confidence            4567899999999877532 11   134577777777763  78999987732      2222221111   23355653


Q ss_pred             ccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC--------------
Q 024306          105 NLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL--------------  169 (269)
Q Consensus       105 ~l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~--------------  169 (269)
                             .+.+.||=+.+ ++.+.|+.+ +++|++|+++|-++.|++.++..+...|++|+++...              
T Consensus       130 -------~~~~HPtQaLaDl~Ti~e~~g-~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~g  201 (309)
T 4f2g_A          130 -------TNEYHPCQVLADIFTYYEHRG-PIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESA  201 (309)
T ss_dssp             -------CSSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGGGG
T ss_pred             -------CCccCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHcC
Confidence                   23456887777 445555554 7999999999999999999999999999999998542              


Q ss_pred             -----CCCHhhhcCCCCEEEecc
Q 024306          170 -----TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       170 -----t~~l~~~~~~aDiVIsAt  187 (269)
                           +.++.+.+++||+|++-+
T Consensus       202 ~~v~~~~d~~eav~~aDvvyt~~  224 (309)
T 4f2g_A          202 PFYQVFDDPNEACKGADLVTTDV  224 (309)
T ss_dssp             GGEEECSSHHHHTTTCSEEEECC
T ss_pred             CeEEEEcCHHHHhcCCCEEEecc
Confidence                 236678899999999755

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=96.51  E-value=0.0039  Score=54.21  Aligned_cols=57  Identities=11%  Similarity=0.134  Sum_probs=44.2

Q ss_pred             ccceEEEEcC----------------CcccHHHHHHHHHhCCCEEEEEeCCCC----------------------CHhhh
Q 024306          135 MGKNAVVIGR----------------SNIVGLPTSLLLQRHHATVSIVHALTK----------------------NPEQI  176 (269)
Q Consensus       135 ~gk~v~ViG~----------------gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------------~l~~~  176 (269)
                      +||+|+|-|+                +|-+|.++|..|..+||+|+++++...                      .+.+.
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~~~~~~~~~~v~s~~em~~~v~~~   81 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPEPHPNLSIREITNTKDLLIEMQER   81 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCCCCTTEEEEECCSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccccCCCCeEEEEHhHHHHHHHHHHHh
Confidence            5899999998                565599999999999999999987531                      01234


Q ss_pred             cCCCCEEEeccCCCC
Q 024306          177 TSEADIVIAAAGVAN  191 (269)
Q Consensus       177 ~~~aDiVIsAtg~p~  191 (269)
                      ...+|++|.+.+...
T Consensus        82 ~~~~Dili~aAAvsD   96 (232)
T 2gk4_A           82 VQDYQVLIHSMAVSD   96 (232)
T ss_dssp             GGGCSEEEECSBCCS
T ss_pred             cCCCCEEEEcCcccc
Confidence            567999999888544

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=96.51  E-value=0.0048  Score=56.10  Aligned_cols=57  Identities=23%  Similarity=0.249  Sum_probs=46.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCC-----------------------CHhhhcCCCCEEEeccC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK-----------------------NPEQITSEADIVIAAAG  188 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~-----------------------~l~~~~~~aDiVIsAtg  188 (269)
                      .+++++|+|.|++|.+|+.++..|.++| ++|+++.|...                       .+.+.++.+|+||...+
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~  108 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLAT  108 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCC
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCC
Confidence            4678999999999999999999999999 99999876421                       12345678899998877


Q ss_pred             C
Q 024306          189 V  189 (269)
Q Consensus       189 ~  189 (269)
                      .
T Consensus       109 ~  109 (377)
T 2q1s_A          109 Y  109 (377)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.51  E-value=0.0023  Score=55.73  Aligned_cols=39  Identities=26%  Similarity=0.293  Sum_probs=32.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+.
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   61 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTE   61 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            357899999999988889999999999999999998764

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.50  E-value=0.0034  Score=59.63  Aligned_cols=58  Identities=14%  Similarity=0.224  Sum_probs=47.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-CC-----------------HhhhcCCCCEEEeccCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KN-----------------PEQITSEADIVIAAAGVA  190 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~-----------------l~~~~~~aDiVIsAtg~p  190 (269)
                      .+++|++|+|+|.|.+ |...+..|.+.||.|+++.... +.                 -.+.+.++|+||.+|+.+
T Consensus         8 ~~l~~~~vlVvGgG~v-a~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at~~~   83 (457)
T 1pjq_A            8 CQLRDRDCLIVGGGDV-AERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDD   83 (457)
T ss_dssp             ECCBTCEEEEECCSHH-HHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCH
T ss_pred             EECCCCEEEEECCCHH-HHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcCCCH
Confidence            4689999999999986 9999999999999999987542 00                 123467899999999975

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=96.50  E-value=0.0016  Score=57.34  Aligned_cols=71  Identities=21%  Similarity=0.343  Sum_probs=52.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCC----------------CCHhhhcCCCCEEEeccCCCC---ccc-
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALT----------------KNPEQITSEADIVIAAAGVAN---LVR-  194 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~t----------------~~l~~~~~~aDiVIsAtg~p~---~i~-  194 (269)
                      ++|.|||.|.+ |.+++..|.+.  +.+|++++++.                .++.+.++++|+||.+++...   .+. 
T Consensus         7 ~~I~iIG~G~m-G~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~   85 (290)
T 3b1f_A            7 KTIYIAGLGLI-GASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKKTIDFIKI   85 (290)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHHHHHHHHH
T ss_pred             ceEEEEeeCHH-HHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHHHHHHHHH
Confidence            68999999886 99999999887  56899987652                234456788999999998422   221 


Q ss_pred             -CCC-cCCCcEEEEee
Q 024306          195 -GSW-LKPGAVVLDVG  208 (269)
Q Consensus       195 -~~~-~~~g~vViDv~  208 (269)
                       ... ++++.+|+|++
T Consensus        86 l~~~~l~~~~ivi~~~  101 (290)
T 3b1f_A           86 LADLDLKEDVIITDAG  101 (290)
T ss_dssp             HHTSCCCTTCEEECCC
T ss_pred             HHhcCCCCCCEEEECC
Confidence             234 67888888875

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.50  E-value=0.0022  Score=57.67  Aligned_cols=56  Identities=20%  Similarity=0.246  Sum_probs=44.6

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHhhhcC--CCCEEE
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITS--EADIVI  184 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------~~l~~~~~--~aDiVI  184 (269)
                      +.++|+|+|++|.+|+.++..|.++|.+|+++.|..                            .++.+.++  ++|+||
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi   88 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVV   88 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEE
Confidence            467899999988899999999999999999998754                            11345567  899999


Q ss_pred             eccCCC
Q 024306          185 AAAGVA  190 (269)
Q Consensus       185 sAtg~p  190 (269)
                      ++++..
T Consensus        89 ~~a~~~   94 (346)
T 3i6i_A           89 STVGGE   94 (346)
T ss_dssp             ECCCGG
T ss_pred             ECCchh
Confidence            888753

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.49  E-value=0.0016  Score=60.90  Aligned_cols=71  Identities=15%  Similarity=0.231  Sum_probs=51.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC---CEEEEEeCCCC----------------------------CHhhhcCC--CCEE
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHH---ATVSIVHALTK----------------------------NPEQITSE--ADIV  183 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~g---a~Vti~~~~t~----------------------------~l~~~~~~--aDiV  183 (269)
                      ++|+|+|+|++ |+.++..|++.+   ..|+++.|+..                            ++.+.+++  +|+|
T Consensus         2 ~kVlIiGaGgi-G~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvV   80 (405)
T 4ina_A            2 AKVLQIGAGGV-GGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIV   80 (405)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEE
Confidence            58999999875 999999999998   38999977521                            12334444  8999


Q ss_pred             EeccCCC-C-cccCCCcCCCcEEEEee
Q 024306          184 IAAAGVA-N-LVRGSWLKPGAVVLDVG  208 (269)
Q Consensus       184 IsAtg~p-~-~i~~~~~~~g~vViDv~  208 (269)
                      |+++|.. + .+-...++.|..++|+.
T Consensus        81 in~ag~~~~~~v~~a~l~~g~~vvD~a  107 (405)
T 4ina_A           81 LNIALPYQDLTIMEACLRTGVPYLDTA  107 (405)
T ss_dssp             EECSCGGGHHHHHHHHHHHTCCEEESS
T ss_pred             EECCCcccChHHHHHHHHhCCCEEEec
Confidence            9999842 1 13334566788899974

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.48  E-value=0.0031  Score=54.25  Aligned_cols=38  Identities=24%  Similarity=0.247  Sum_probs=34.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~   42 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRD   42 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            46789999999998888999999999999999999876

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.48  E-value=0.0032  Score=55.69  Aligned_cols=54  Identities=15%  Similarity=0.099  Sum_probs=43.7

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-C-----------------------------CHhhhcCCCCEEEe
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-K-----------------------------NPEQITSEADIVIA  185 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~-----------------------------~l~~~~~~aDiVIs  185 (269)
                      .++|+|+|++|.+|+.++..|.++|++|+++.|.. .                             ++.+.++.+|+||+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            46899999988889999999999999999987763 0                             13456778899998


Q ss_pred             ccCC
Q 024306          186 AAGV  189 (269)
Q Consensus       186 Atg~  189 (269)
                      +++.
T Consensus        84 ~a~~   87 (321)
T 3c1o_A           84 ALPF   87 (321)
T ss_dssp             CCCG
T ss_pred             CCCc
Confidence            8774

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.48  E-value=0.004  Score=56.19  Aligned_cols=93  Identities=14%  Similarity=0.134  Sum_probs=62.9

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhh
Q 024306          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQI  176 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~  176 (269)
                      +||....++..+++.++ -.|++|+|+|+|+ +|..+++++...|++|+.+.++.                   .++.+.
T Consensus       146 l~~~~~ta~~~l~~~~~-~~g~~VlV~GaG~-vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~  223 (339)
T 1rjw_A          146 IFCAGVTTYKALKVTGA-KPGEWVAIYGIGG-LGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKF  223 (339)
T ss_dssp             GGTHHHHHHHHHHHHTC-CTTCEEEEECCST-THHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHH
T ss_pred             hhhhHHHHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHH
Confidence            45544445666665543 3689999999977 69999999999999988886531                   122222


Q ss_pred             ----cCCCCEEEeccCCCCccc--CCCcCCCcEEEEeeec
Q 024306          177 ----TSEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       177 ----~~~aDiVIsAtg~p~~i~--~~~~~~g~vViDv~~~  210 (269)
                          ...+|+||+++|.+..+.  -+.++++-.++.++..
T Consensus       224 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          224 MKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             HHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             HHHHhCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEeccc
Confidence                246899999999743322  2346776677777754

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.48  E-value=0.0026  Score=55.14  Aligned_cols=37  Identities=24%  Similarity=0.246  Sum_probs=33.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+++++.|+++|++|.++.|.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDIL   40 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998888999999999999999998775

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=96.48  E-value=0.016  Score=52.35  Aligned_cols=164  Identities=12%  Similarity=0.044  Sum_probs=109.8

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceec
Q 024306           28 NKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG  104 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~---~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g  104 (269)
                      +-..++.++|.++.++.-....   .-|-+.+..+-|+.-  +|+|.+-.|-..  ....+.+..       .+-.+|.|
T Consensus        61 SFe~A~~~LGg~~i~l~~~~~s~~~kgEsl~DTarvls~~--~D~iviR~~~~~--~~~~la~~~-------~vPVINag  129 (308)
T 1ml4_A           61 SFESAMHRLGGAVIGFAEASTSSVKKGESLRDTIKTVEQY--CDVIVIRHPKEG--AARLAAEVA-------EVPVINAG  129 (308)
T ss_dssp             HHHHHHHHTTCEEEEESCGGGSGGGGTCCHHHHHHHHTTT--CSEEEEEESSTT--HHHHHHHTC-------SSCEEEEE
T ss_pred             HHHHHHHHhCCeEEEeCCCccccccCCCCHHHHHHHHHHh--CcEEEEecCChh--HHHHHHHhC-------CCCEEeCc
Confidence            4567899999999888533211   125678888888774  789999887443  223333321       13345642


Q ss_pred             ccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCC--cccHHHHHHHHHhCCCEEEEEeCC-------------
Q 024306          105 NLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVHAL-------------  169 (269)
Q Consensus       105 ~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~g--g~vg~~~a~~L~~~ga~Vti~~~~-------------  169 (269)
                      .      .+.+.||=+.+=+--++++...++|.+|+++|-+  +-|++.++..+...|++|+++...             
T Consensus       130 ~------g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~  203 (308)
T 1ml4_A          130 D------GSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELR  203 (308)
T ss_dssp             E------TTSCCHHHHHHHHHHHHHHSSCSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHH
T ss_pred             c------CCccCcHHHHHHHHHHHHHhCCCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHH
Confidence            2      1345688888844444445557999999999986  357999999999999999999543             


Q ss_pred             --------CCCHhhhcCCCCEEEeccCC----C----------Cc-ccCCCc---CCCcEEEEee
Q 024306          170 --------TKNPEQITSEADIVIAAAGV----A----------NL-VRGSWL---KPGAVVLDVG  208 (269)
Q Consensus       170 --------t~~l~~~~~~aDiVIsAtg~----p----------~~-i~~~~~---~~g~vViDv~  208 (269)
                              +.++.+.+++||+|.+-.=.    +          .+ ++.+.+   +++++|+=..
T Consensus       204 ~~g~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l  268 (308)
T 1ml4_A          204 EKGMKVVETTTLEDVIGKLDVLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  268 (308)
T ss_dssp             HTTCCEEEESCTHHHHTTCSEEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             HcCCeEEEEcCHHHHhcCCCEEEECCccccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence                    13567889999999975521    1          23 666665   4677776544

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.48  E-value=0.0027  Score=54.41  Aligned_cols=38  Identities=21%  Similarity=0.246  Sum_probs=34.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+.+++.|+++|++|.++.|+
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~   42 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADIN   42 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence            45789999999998888999999999999999998775

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=96.48  E-value=0.0023  Score=56.41  Aligned_cols=71  Identities=17%  Similarity=0.345  Sum_probs=51.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------------CHhhhcC---CCCEEEecc
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------------NPEQITS---EADIVIAAA  187 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------------~l~~~~~---~aDiVIsAt  187 (269)
                      .+|.|||+|.+ |.+++..|.+.|.+|++++++..                          +..+...   ++|+||.++
T Consensus         4 m~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v   82 (316)
T 2ew2_A            4 MKIAIAGAGAM-GSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALT   82 (316)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECS
T ss_pred             CeEEEECcCHH-HHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEe
Confidence            47999999886 99999999999999999987521                          1112233   899999999


Q ss_pred             CCCC---ccc--CCCcCCCcEEEEee
Q 024306          188 GVAN---LVR--GSWLKPGAVVLDVG  208 (269)
Q Consensus       188 g~p~---~i~--~~~~~~g~vViDv~  208 (269)
                      +.+.   .+.  ...++++++|+++.
T Consensus        83 ~~~~~~~v~~~l~~~l~~~~~iv~~~  108 (316)
T 2ew2_A           83 KAQQLDAMFKAIQPMITEKTYVLCLL  108 (316)
T ss_dssp             CHHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred             ccccHHHHHHHHHHhcCCCCEEEEec
Confidence            8432   111  22467788888875

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.48  E-value=0.0028  Score=56.44  Aligned_cols=36  Identities=19%  Similarity=0.357  Sum_probs=32.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      .+++|++|+|+|.|.+ |...+..|.+.||.|+++..
T Consensus         9 ~~l~~k~VLVVGgG~v-a~rka~~Ll~~Ga~VtViap   44 (274)
T 1kyq_A            9 HQLKDKRILLIGGGEV-GLTRLYKLMPTGCKLTLVSP   44 (274)
T ss_dssp             ECCTTCEEEEEEESHH-HHHHHHHHGGGTCEEEEEEE
T ss_pred             EEcCCCEEEEECCcHH-HHHHHHHHHhCCCEEEEEcC
Confidence            4689999999999986 99999999999999998853

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=96.47  E-value=0.031  Score=51.47  Aligned_cols=140  Identities=9%  Similarity=0.053  Sum_probs=96.2

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceec
Q 024306           28 NKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG  104 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~---~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g  104 (269)
                      +-..++.++|.++.++.-. +.   .-|-+.+.++-|+.-  +|+|.+--|-.      ..+..+....   ++-.+|.|
T Consensus        58 SFE~A~~~LGg~vi~l~~~-~ssl~kgEsl~DTarvLs~y--~D~IviR~~~~------~~~~~lA~~~---~vPVINag  125 (355)
T 4a8p_A           58 SFETAMEQLGGHGEYLAPG-QIQLGGHETIEDTSRVLSRL--VDILMARVERH------HSIVDLANCA---TIPVINGM  125 (355)
T ss_dssp             HHHHHHHHTTCEEEEECBT-TBCBTTTBCHHHHHHHHTTT--CSEEEEECSSH------HHHHHHHHHC---SSCEEECC
T ss_pred             hHHHHHHHcCCeEEEeCcc-cccCCCCcCHHHHHHHHHHh--CCEEEEecCcH------HHHHHHHHhC---CCCEEeCC
Confidence            3567899999999987532 11   135688888888874  89999987732      2222221111   23345643


Q ss_pred             ccccCCCCCccccCCHHHH-HHHHHHh--CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------
Q 024306          105 NLAMRGREPLFIPCTPKGC-IELLIRS--GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------  170 (269)
Q Consensus       105 ~l~~g~~~~~~~p~t~~g~-~~~l~~~--~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------  170 (269)
                             ++.+.||=+.+= +.+.++.  +.+++|.+|+++|-++.|++.++..+...|++|+++....           
T Consensus       126 -------~~~~HPtQaLaDl~TI~E~~~~G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~  198 (355)
T 4a8p_A          126 -------SDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKL  198 (355)
T ss_dssp             -------CSSCCHHHHHHHHHHHHHTCCTTCCGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHH
T ss_pred             -------CCCCCcHHHHHHHHHHHHHhhcCCCCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHH
Confidence                   244668877774 4444444  3379999999999998899999999999999999996542           


Q ss_pred             --------------CCHhhhcCCCCEEEecc
Q 024306          171 --------------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       171 --------------~~l~~~~~~aDiVIsAt  187 (269)
                                    .++. .+++||+|.+-+
T Consensus       199 ~~~a~~~G~~v~~~~d~~-av~~aDVVytd~  228 (355)
T 4a8p_A          199 AKNCEVSGGSFLVTDDAS-SVEGADFLYTDV  228 (355)
T ss_dssp             HHHHHHHSCEEEEECCGG-GGTTCSEEEECC
T ss_pred             HHHHHHcCCeEEEECCHH-HHcCCCEEEecc
Confidence                          2455 789999999743

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.47  E-value=0.0035  Score=57.21  Aligned_cols=95  Identities=22%  Similarity=0.253  Sum_probs=62.2

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhh-
Q 024306          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQ-  175 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~-  175 (269)
                      +||....+...+.+..---.|++|+|+|+|+ +|..+++++...|++|+++.+..                   .++.+ 
T Consensus       170 l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~-vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~  248 (363)
T 3uog_A          170 LPCAGLTAWFALVEKGHLRAGDRVVVQGTGG-VALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVER  248 (363)
T ss_dssp             TTTHHHHHHHHHTTTTCCCTTCEEEEESSBH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHH
T ss_pred             cccHHHHHHHHHHHhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHH
Confidence            3444444555553333334799999999665 59999999999999988876541                   12222 


Q ss_pred             ---hc--CCCCEEEeccCCCCc-ccCCCcCCCcEEEEeeecC
Q 024306          176 ---IT--SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       176 ---~~--~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~~~  211 (269)
                         ..  +.+|+||+++|.+.+ -.-+.++++-.++.+|...
T Consensus       249 v~~~~~g~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~  290 (363)
T 3uog_A          249 VYALTGDRGADHILEIAGGAGLGQSLKAVAPDGRISVIGVLE  290 (363)
T ss_dssp             HHHHHTTCCEEEEEEETTSSCHHHHHHHEEEEEEEEEECCCS
T ss_pred             HHHHhCCCCceEEEECCChHHHHHHHHHhhcCCEEEEEecCC
Confidence               22  258999999984322 2234577877888888653

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.47  E-value=0.0027  Score=55.31  Aligned_cols=37  Identities=24%  Similarity=0.321  Sum_probs=33.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~   39 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDRE   39 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3689999999998888999999999999999998775

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.47  E-value=0.0019  Score=53.22  Aligned_cols=53  Identities=19%  Similarity=0.297  Sum_probs=41.9

Q ss_pred             cc-eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------CHhhhcC---CCCEEEeccCC
Q 024306          136 GK-NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------NPEQITS---EADIVIAAAGV  189 (269)
Q Consensus       136 gk-~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------~l~~~~~---~aDiVIsAtg~  189 (269)
                      +| +++|.|+++-+|+.++..|+ +|++|+++.|...          ++.+.++   ..|+||+..|.
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag~   68 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSATGS   68 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSSSEECCTTCHHHHHHHHHHHCCEEEEEECCCC
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCccceeeecCCHHHHHHHHHHhCCCCEEEECCCC
Confidence            56 89999999999999999999 9999999987631          1233333   47999988884

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.0045  Score=56.00  Aligned_cols=93  Identities=13%  Similarity=0.090  Sum_probs=61.5

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------CCHhhh
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------KNPEQI  176 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------~~l~~~  176 (269)
                      ||....++..+++.++ -.|++|+|+|++|.+|..+++.+..+|++|+++.++.                    .++.+.
T Consensus       152 ~~~~~ta~~~l~~~~~-~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~  230 (347)
T 2hcy_A          152 LCAGITVYKALKSANL-MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGA  230 (347)
T ss_dssp             GTHHHHHHHHHHTTTC-CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHH
T ss_pred             hhhHHHHHHHHHhcCC-CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHH
Confidence            4433334555654432 3689999999966679999999999999988876542                    122222


Q ss_pred             cC-----CCCEEEeccCCCCcc--cCCCcCCCcEEEEeeec
Q 024306          177 TS-----EADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       177 ~~-----~aDiVIsAtg~p~~i--~~~~~~~g~vViDv~~~  210 (269)
                      ++     ..|+||+++|.+..+  --+.++++-.++.++..
T Consensus       231 ~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~  271 (347)
T 2hcy_A          231 VLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMP  271 (347)
T ss_dssp             HHHHHTSCEEEEEECSSCHHHHHHHTTSEEEEEEEEECCCC
T ss_pred             HHHHhCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCC
Confidence            22     479999998864332  23456776677777754

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=96.46  E-value=0.034  Score=51.17  Aligned_cols=142  Identities=12%  Similarity=0.140  Sum_probs=96.4

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC--CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceecc
Q 024306           28 NKIKACEEVGIKSIVTEFADGC--TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGN  105 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~--~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~  105 (269)
                      +-..++.++|.++.++......  .-|-+.+.++-|..-  +|+|.+-.|-..  ....+.+.       -.+-.+|.| 
T Consensus        83 SFE~A~~~LGg~~i~l~~~~s~l~kgEsl~DTarvLs~~--~D~IviR~~~~~--~~~~lA~~-------s~vPVINag-  150 (353)
T 3sds_A           83 STEGAVVKMGGHPMFLGKDDIQLGVNESLYDTSVVISSM--VSCIVARVGPHS--DIANLAKH-------SSVPVINAL-  150 (353)
T ss_dssp             HHHHHHHHTTCEEEEECTTTC--CCSSCHHHHHHHHHTS--CSEEEEECSSHH--HHHHHHHH-------CSSCEEEEE-
T ss_pred             HHHHHHHHcCCeEEecCCccccccCCccHHHHHHHHHHh--cCEEEEEeCChH--HHHHHHhh-------CCCCEEECC-
Confidence            4567899999999877532210  125677888888774  789988766221  11222221       123345653 


Q ss_pred             cccCCCCCccccCCHHH-HHHHHHHhCCC------------CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--
Q 024306          106 LAMRGREPLFIPCTPKG-CIELLIRSGVE------------IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--  170 (269)
Q Consensus       106 l~~g~~~~~~~p~t~~g-~~~~l~~~~~~------------l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--  170 (269)
                            .+.+.||=+.+ ++.+.|+.+.-            ++|.+|+++|-+..|++.++..|...|++|+++....  
T Consensus       151 ------~d~~HPtQaLaDl~TI~E~~G~~~~~~~~~~~~~~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~  224 (353)
T 3sds_A          151 ------CDTFHPLQAIADFLTIHESFASQSATHGTHPSSLGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYE  224 (353)
T ss_dssp             ------CSSCCHHHHHHHHHHHHHHTC--------CTTCCSCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCC
T ss_pred             ------CCCCCcHHHHHHHHHHHHHhCCCcccccccccccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccC
Confidence                  12456887777 55555665532            5999999999999999999999999999999985431  


Q ss_pred             -------------------------CCHhhhcCCCCEEEecc
Q 024306          171 -------------------------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       171 -------------------------~~l~~~~~~aDiVIsAt  187 (269)
                                               .++.+.+++||+|++-+
T Consensus       225 ~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvytd~  266 (353)
T 3sds_A          225 IPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIVTDT  266 (353)
T ss_dssp             CCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEEECC
T ss_pred             CCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEEeCC
Confidence                                     35667899999999754

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=96.45  E-value=0.0032  Score=56.50  Aligned_cols=52  Identities=21%  Similarity=0.252  Sum_probs=42.9

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcCCCCEEEeccCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~aDiVIsAtg~  189 (269)
                      .-|+|.|||.|-+ |.++|..|+ .|.+|++.+++..                     ++.+ +++||+||.+++-
T Consensus        11 ~~~~V~vIG~G~M-G~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe   83 (293)
T 1zej_A           11 HHMKVFVIGAGLM-GRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFE   83 (293)
T ss_dssp             -CCEEEEECCSHH-HHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCS
T ss_pred             CCCeEEEEeeCHH-HHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcC
Confidence            4589999999887 999999999 9999999987631                     2333 7889999999984

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=96.45  E-value=0.0041  Score=55.47  Aligned_cols=57  Identities=18%  Similarity=0.191  Sum_probs=43.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------CHhhhcCC--CCEEEecc
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------NPEQITSE--ADIVIAAA  187 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------~l~~~~~~--aDiVIsAt  187 (269)
                      .+++++|+|.|++|.+|+.++..|+++|++|+++.|...                       .+.+.++.  .|+||+..
T Consensus        18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A   97 (333)
T 2q1w_A           18 GSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTA   97 (333)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECc
Confidence            357899999999998999999999999999999876521                       12234555  89999887


Q ss_pred             CC
Q 024306          188 GV  189 (269)
Q Consensus       188 g~  189 (269)
                      +.
T Consensus        98 ~~   99 (333)
T 2q1w_A           98 AS   99 (333)
T ss_dssp             CC
T ss_pred             ee
Confidence            74

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.45  E-value=0.0043  Score=53.74  Aligned_cols=39  Identities=18%  Similarity=0.207  Sum_probs=33.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .++++|+++|.|+++-+|++++..|+++|++|.++.|+.
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   55 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSG   55 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            357899999999998899999999999999999987753

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.45  E-value=0.0038  Score=56.03  Aligned_cols=57  Identities=14%  Similarity=0.141  Sum_probs=46.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------------------CHhhhcCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------------------NPEQITSEA  180 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------------------~l~~~~~~a  180 (269)
                      ++++++|+|.|++|.+|+.++..|.++|++|+++.|...                                ++.+.++..
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            367899999999888999999999999999999876421                                123456788


Q ss_pred             CEEEeccCC
Q 024306          181 DIVIAAAGV  189 (269)
Q Consensus       181 DiVIsAtg~  189 (269)
                      |+||...+.
T Consensus       104 d~vih~A~~  112 (352)
T 1sb8_A          104 DYVLHQAAL  112 (352)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECCcc
Confidence            999988874

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.44  E-value=0.0039  Score=54.29  Aligned_cols=40  Identities=23%  Similarity=0.247  Sum_probs=35.4

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       130 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ...+++||+++|.|+++-+|+.+++.|+++|++|.++.|.
T Consensus        23 ~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~   62 (271)
T 4iin_A           23 NAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRS   62 (271)
T ss_dssp             -CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             hhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3467899999999998888999999999999999998774

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.44  E-value=0.0035  Score=54.73  Aligned_cols=38  Identities=24%  Similarity=0.168  Sum_probs=34.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   54 (273)
T 1ae1_A           17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRN   54 (273)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence            46889999999998888999999999999999998775

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.42  E-value=0.0044  Score=54.73  Aligned_cols=38  Identities=21%  Similarity=0.353  Sum_probs=34.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+++++.|+++|++|.++.++
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~   80 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLD   80 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999998888999999999999999988765

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=96.41  E-value=0.0033  Score=54.34  Aligned_cols=49  Identities=16%  Similarity=0.215  Sum_probs=40.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCC---------------CHhhhcCCCCEEEeccC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK---------------NPEQITSEADIVIAAAG  188 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~---------------~l~~~~~~aDiVIsAtg  188 (269)
                      +|.|||.|.+ |.+++..|.+.| .+|++++++..               +..+.+ ++|+||.+++
T Consensus         2 ~i~iiG~G~m-G~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~   66 (263)
T 1yqg_A            2 NVYFLGGGNM-AAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK   66 (263)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC
T ss_pred             EEEEECchHH-HHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC
Confidence            6899999886 999999999999 89999987631               233445 8999999998

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=96.41  E-value=0.011  Score=54.17  Aligned_cols=140  Identities=14%  Similarity=0.170  Sum_probs=95.0

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceec
Q 024306           28 NKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG  104 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~---~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g  104 (269)
                      +-..++.++|.++.++.-. +.   .-|-+.+.++-|+.-  +|+|.+--|-..  ....+.+..       .+-.+|.|
T Consensus        87 SFE~A~~~LGg~vi~l~~~-~ss~~kgEsl~DTarvLs~y--~D~IviR~~~~~--~~~~lA~~~-------~vPVINag  154 (340)
T 4ep1_A           87 SFEAGMVQLGGHGMFLNGK-EMQMGRGETVSDTAKVLSHY--IDGIMIRTFSHA--DVEELAKES-------SIPVINGL  154 (340)
T ss_dssp             HHHHHHHHTTCEEEEEESC-C------CCTTHHHHHHHHH--CSEEEEECSCHH--HHHHHHHHC-------SSCEEEEE
T ss_pred             HHHHHHHHcCCeEEEcCcc-cccCCCCCCHHHHHHHHHHh--CCEEEEecCChh--HHHHHHHhC-------CCCEEeCC
Confidence            4567899999999887532 21   123466666666663  788998877322  112222211       23345653


Q ss_pred             ccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------
Q 024306          105 NLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------  170 (269)
Q Consensus       105 ~l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------  170 (269)
                      .       +.+.||=+.+ ++.+.++.+ .++|.+|+++|-++.|++.++..+...|++|+++....             
T Consensus       155 ~-------~~~HPtQaLaDl~TI~E~~G-~l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~  226 (340)
T 4ep1_A          155 T-------DDHHPCQALADLMTIYEETN-TFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALA  226 (340)
T ss_dssp             C-------SSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHH
T ss_pred             C-------CCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHH
Confidence            2       2456887777 455555554 69999999999998899999999999999999996432             


Q ss_pred             ------------CCHhhhcCCCCEEEecc
Q 024306          171 ------------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       171 ------------~~l~~~~~~aDiVIsAt  187 (269)
                                  .++.+.+++||+|++-.
T Consensus       227 ~a~~~G~~v~~~~d~~eav~~aDVvyt~~  255 (340)
T 4ep1_A          227 IAKETGAEIEILHNPELAVNEADFIYTDV  255 (340)
T ss_dssp             HHHHHCCCEEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHcCCeEEEECCHHHHhCCCCEEEecC
Confidence                        35667899999999654

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*

Probab=96.41  E-value=0.0033  Score=60.90  Aligned_cols=166  Identities=13%  Similarity=0.173  Sum_probs=110.2

Q ss_pred             HHHHHHHHc-CCe---EEEEEcCCCC-------C-------------------HHHHHHHHHhhhcCCCcCEEEEeCCCC
Q 024306           28 NKIKACEEV-GIK---SIVTEFADGC-------T-------------------EDEVLNALSNYNQDSSINGILVQLPLP   77 (269)
Q Consensus        28 ~~~~~~~~~-Gi~---~~~~~~~~~~-------~-------------------~~~l~~~i~~ln~d~~v~Gi~V~~Pl~   77 (269)
                      .|.-.|..+ ||+   +.-++|+..+       +                   .+|+.++++..--  ..-+|+.     
T Consensus       162 GKl~Ly~~~aGIdP~~~lPI~lDvgTnn~~LL~DPlYlG~r~~Rv~g~eYd~fvdefv~av~~~fG--~~~~I~~-----  234 (564)
T 1pj3_A          162 GKLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYG--RNTLIQF-----  234 (564)
T ss_dssp             HHHHHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHHHC--TTCEEEE-----
T ss_pred             hHHHHHHhccCCChhheeeeEeecCcCchhhccCCcccCcCCCCCchhhHHHHHHHHHHHHHHHcC--CCcEEee-----
Confidence            566656655 799   8888887632       2                   4566666665321  2334665     


Q ss_pred             CCCCHHHHHhcCCccc-cccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHH
Q 024306           78 QHLDEGKILDAVSLEK-DVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLL  156 (269)
Q Consensus        78 ~~~~~~~i~~~i~p~k-dvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L  156 (269)
                      |.+...+.+..++-.+ ++-.+|.--.|       |   --.+..|++..++-.+.++++.++++.|+|.+ |.+++.+|
T Consensus       235 EDf~~~~af~il~ryr~~ipvFnDDiqG-------T---a~V~lAgllnAlki~gk~l~d~riv~~GAGaA-gigia~ll  303 (564)
T 1pj3_A          235 EDFGNHNAFRFLRKYREKYCTFNDDIQG-------T---AAVALAGLLAAQKVISKPISEHKILFLGAGEA-ALGIANLI  303 (564)
T ss_dssp             CSCCHHHHHHHHHHHTTTSSEEEHHHHH-------H---HHHHHHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHH
T ss_pred             hhcCCccHHHHHHHhccCCCEeCCCCch-------H---HHHHHHHHHHHHHHhCCcHhHcEEEEeCCCHH-HHHHHHHH
Confidence            5555544444333322 32222111111       1   11245788999999999999999999999998 99999998


Q ss_pred             Hh----CCC-------EEEEEeCC--------C------------------CCHhhhcC--CCCEEEeccCCCCcccCCC
Q 024306          157 QR----HHA-------TVSIVHAL--------T------------------KNPEQITS--EADIVIAAAGVANLVRGSW  197 (269)
Q Consensus       157 ~~----~ga-------~Vti~~~~--------t------------------~~l~~~~~--~aDiVIsAtg~p~~i~~~~  197 (269)
                      ..    .|.       ++++|+++        .                  .+|.+.++  .+|++|-..+.|+.+++++
T Consensus       304 ~~~m~~~Gl~~eeA~~~i~~~D~~Gli~~~r~~~l~~~k~~~A~~~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~ev  383 (564)
T 1pj3_A          304 VMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDV  383 (564)
T ss_dssp             HHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHHHCCSEEEECCCSSCCSCHHH
T ss_pred             HHHHHHcCCChHHhhCcEEEEeCCCeEECCCcccchHHHHHHHHhcCccccCCHHHHHhhcCCCEEEEeCCCCCCCCHHH
Confidence            85    783       58999653        0                  24777777  5999998888888999998


Q ss_pred             cC------CCcEEEEeeecCC
Q 024306          198 LK------PGAVVLDVGTCPV  212 (269)
Q Consensus       198 ~~------~g~vViDv~~~~~  212 (269)
                      ++      +.-+|+=++ ||.
T Consensus       384 v~~Ma~~~~~PIIFaLS-NPt  403 (564)
T 1pj3_A          384 IRAMASINERPVIFALS-NPT  403 (564)
T ss_dssp             HHHHHHHCSSCEEEECC-SSG
T ss_pred             HHHHHhcCCCCEEEECC-CCC
Confidence            75      466777777 553

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=96.41  E-value=0.0032  Score=55.24  Aligned_cols=56  Identities=14%  Similarity=0.182  Sum_probs=42.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----C---Hh------------hhcCCCCEEEeccCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----N---PE------------QITSEADIVIAAAGV  189 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----~---l~------------~~~~~aDiVIsAtg~  189 (269)
                      +.+++|+|.|++|.+|+.++..|.++|++|+++.|...    .   +.            .-+.+.|+||.+.+.
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~d~vi~~a~~   79 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLSDVRLVYHLASH   79 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHTTEEEEEECCCC
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccccCCEEEECCcc
Confidence            46799999999998999999999999999999987543    1   11            112268999988874

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.40  E-value=0.0012  Score=54.66  Aligned_cols=78  Identities=14%  Similarity=0.199  Sum_probs=51.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHh----hhc--CCCCEEEeccC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE----QIT--SEADIVIAAAG  188 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~----~~~--~~aDiVIsAtg  188 (269)
                      -.|++|+|+|+++.+|+.+++.+...|++|+++.++.                   .+..    +..  ...|++|+++|
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g  116 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA  116 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCc
Confidence            3789999999655569999999999999988876542                   1111    112  24788888887


Q ss_pred             CCCc-ccCCCcCCCcEEEEeeecC
Q 024306          189 VANL-VRGSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       189 ~p~~-i~~~~~~~g~vViDv~~~~  211 (269)
                      .+.+ -..+.++++-.++.++...
T Consensus       117 ~~~~~~~~~~l~~~G~~v~~g~~~  140 (198)
T 1pqw_A          117 GEAIQRGVQILAPGGRFIELGKKD  140 (198)
T ss_dssp             THHHHHHHHTEEEEEEEEECSCGG
T ss_pred             hHHHHHHHHHhccCCEEEEEcCCC
Confidence            4221 1223566766777777543

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.40  E-value=0.0044  Score=56.34  Aligned_cols=55  Identities=24%  Similarity=0.297  Sum_probs=44.0

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC--------------------------CCCHhhhcCCCCEEEeccC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL--------------------------TKNPEQITSEADIVIAAAG  188 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~--------------------------t~~l~~~~~~aDiVIsAtg  188 (269)
                      ..+|+|||+|. +|.+++..|+..|. +|++..+.                          +.++.+.+++||+||.++|
T Consensus         9 ~~kI~VIGaG~-vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g   87 (331)
T 1pzg_A            9 RKKVAMIGSGM-IGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   87 (331)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccC
Confidence            35899999966 59999999999886 88888543                          1355567899999999998


Q ss_pred             CCC
Q 024306          189 VAN  191 (269)
Q Consensus       189 ~p~  191 (269)
                      .|.
T Consensus        88 ~p~   90 (331)
T 1pzg_A           88 LTK   90 (331)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            653

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.40  E-value=0.0031  Score=54.31  Aligned_cols=38  Identities=29%  Similarity=0.284  Sum_probs=34.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+++++.|+++|++|.++.|.
T Consensus         5 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~   42 (248)
T 3op4_A            5 MNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATS   42 (248)
T ss_dssp             TCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999998888999999999999999998775

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=96.40  E-value=0.0047  Score=54.81  Aligned_cols=38  Identities=24%  Similarity=0.225  Sum_probs=34.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..|+||.++|-|++.-+|+++|+.|+++||+|.++.|+
T Consensus        25 ~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~   62 (273)
T 4fgs_A           25 QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRR   62 (273)
T ss_dssp             CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             chhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            35899999999998878999999999999999999876

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=96.39  E-value=0.0049  Score=56.64  Aligned_cols=34  Identities=18%  Similarity=0.379  Sum_probs=30.3

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  168 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  168 (269)
                      +++++|+|+|+||. |.+++..|+..|. ++++++.
T Consensus       116 L~~~~VlvvG~Ggl-Gs~va~~La~aGvg~i~lvD~  150 (353)
T 3h5n_A          116 LKNAKVVILGCGGI-GNHVSVILATSGIGEIILIDN  150 (353)
T ss_dssp             HHTCEEEEECCSHH-HHHHHHHHHHHTCSEEEEEEC
T ss_pred             HhCCeEEEECCCHH-HHHHHHHHHhCCCCeEEEECC
Confidence            46899999999997 9999999999996 7999864

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=96.39  E-value=0.0026  Score=56.10  Aligned_cols=55  Identities=15%  Similarity=0.192  Sum_probs=44.6

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------CCHhhhcC--CCCEEEeccCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------KNPEQITS--EADIVIAAAGV  189 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------~~l~~~~~--~aDiVIsAtg~  189 (269)
                      ++++|+|.|++|.+|+.++..|.++|++|+++.+..       .++.+.++  ..|+||...+.
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~~D~~d~~~~~~~~~~~~~d~vih~a~~   65 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAK   65 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCccCCccCHHHHHHHHHhcCCCEEEEcCee
Confidence            468999999999999999999999999988876542       12445666  89999988874

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.39  E-value=0.0039  Score=54.19  Aligned_cols=36  Identities=17%  Similarity=0.068  Sum_probs=33.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++|+++|.|+++-+|++++..|+++|++|.++.|.
T Consensus        26 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   61 (260)
T 3un1_A           26 NQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRS   61 (260)
T ss_dssp             TTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            689999999998888999999999999999999775

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.39  E-value=0.003  Score=54.63  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=33.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   39 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRT   39 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998888999999999999999998775

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.38  E-value=0.004  Score=52.94  Aligned_cols=36  Identities=14%  Similarity=0.174  Sum_probs=32.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +||+++|.|+++-+|+.+++.|+++|++|+++.|+.
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~   37 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSA   37 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCc
Confidence            689999999998899999999999999999987763

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=96.38  E-value=0.0033  Score=53.75  Aligned_cols=39  Identities=23%  Similarity=0.361  Sum_probs=35.5

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..++++|+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~   47 (249)
T 3f9i_A            9 MIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSN   47 (249)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCC
Confidence            456899999999998889999999999999999999775

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.38  E-value=0.007  Score=55.09  Aligned_cols=56  Identities=14%  Similarity=0.050  Sum_probs=45.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcCCCCEEEeccCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~aDiVIsAtg~  189 (269)
                      .++++|+|.|++|.+|+.++..|.++|++|+++.|...                     ++.+.++..|+||...+.
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~  103 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD  103 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECcee
Confidence            46789999999998999999999999999999877531                     134567789999988774

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.38  E-value=0.0032  Score=55.27  Aligned_cols=37  Identities=27%  Similarity=0.196  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~   62 (276)
T 2b4q_A           26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARD   62 (276)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999998888999999999999999998765

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=96.38  E-value=0.0043  Score=54.04  Aligned_cols=70  Identities=14%  Similarity=0.136  Sum_probs=51.3

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC---------------------HhhhcCCCCEEEeccCCCCc---c
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN---------------------PEQITSEADIVIAAAGVANL---V  193 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~---------------------l~~~~~~aDiVIsAtg~p~~---i  193 (269)
                      +|.|||+|.+ |.+++..|.+.|.+|++++|+...                     ..+.++++|+||.+++.+..   +
T Consensus         2 ~i~iiG~G~~-G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~~~~v~   80 (291)
T 1ks9_A            2 KITVLGCGAL-GQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAV   80 (291)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHHH
T ss_pred             eEEEECcCHH-HHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHHhHHHHH
Confidence            6999999876 999999999999999999775321                     12345679999999986432   1


Q ss_pred             c--CCCcCCCcEEEEee
Q 024306          194 R--GSWLKPGAVVLDVG  208 (269)
Q Consensus       194 ~--~~~~~~g~vViDv~  208 (269)
                      .  ...++++++|+|+.
T Consensus        81 ~~l~~~l~~~~~vv~~~   97 (291)
T 1ks9_A           81 KSLASTLPVTTPILLIH   97 (291)
T ss_dssp             HHHHTTSCTTSCEEEEC
T ss_pred             HHHHhhCCCCCEEEEec
Confidence            1  12456778888874

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.37  E-value=0.002  Score=58.60  Aligned_cols=77  Identities=16%  Similarity=0.168  Sum_probs=54.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhhc-----CCCCEEEeccCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQIT-----SEADIVIAAAGV  189 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~-----~~aDiVIsAtg~  189 (269)
                      -.|++|+|+|++|.+|..+++++...|++|+++.++.                   .++.+.+     ...|++|+++|.
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  245 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGA  245 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCG
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCH
Confidence            3799999997656679999999999999988886542                   2222222     258999999997


Q ss_pred             CCc-ccCCCcCCCcEEEEeeec
Q 024306          190 ANL-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       190 p~~-i~~~~~~~g~vViDv~~~  210 (269)
                      +.+ -..+.++++-.++.++..
T Consensus       246 ~~~~~~~~~l~~~G~iv~~g~~  267 (353)
T 4dup_A          246 AYFERNIASLAKDGCLSIIAFL  267 (353)
T ss_dssp             GGHHHHHHTEEEEEEEEECCCT
T ss_pred             HHHHHHHHHhccCCEEEEEEec
Confidence            533 223456777777777754

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=96.37  E-value=0.0025  Score=55.46  Aligned_cols=55  Identities=13%  Similarity=0.166  Sum_probs=45.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC------HhhhcC--CCCEEEeccCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN------PEQITS--EADIVIAAAGV  189 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~------l~~~~~--~aDiVIsAtg~  189 (269)
                      .-++|+|.|++|.+|+.++..|.++|++|+++.|..-+      +.+.++  ..|+||...+.
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   73 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAH   73 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCccCCCCCHHHHHHHHHhcCCCEEEECCcc
Confidence            45889999999999999999999999999999876422      345566  68999988874

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.37  E-value=0.0038  Score=54.80  Aligned_cols=39  Identities=18%  Similarity=0.293  Sum_probs=35.1

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..+++||+++|.|+++-+|++++..|+++|++|.++.++
T Consensus        22 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~   60 (277)
T 4dqx_A           22 SMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVN   60 (277)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            356899999999998888999999999999999998765

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.36  E-value=0.0055  Score=53.90  Aligned_cols=39  Identities=23%  Similarity=0.331  Sum_probs=34.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .+++||+++|.|+++-+|+++++.|+++|++|.++.|+.
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   43 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSA   43 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            357899999999988889999999999999999987764

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.36  E-value=0.0043  Score=53.99  Aligned_cols=37  Identities=16%  Similarity=0.214  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   53 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRD   53 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999998888999999999999999998765

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=96.36  E-value=0.0043  Score=54.37  Aligned_cols=52  Identities=19%  Similarity=0.246  Sum_probs=43.9

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC--------HhhhcCCCCEEEeccCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN--------PEQITSEADIVIAAAGV  189 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~--------l~~~~~~aDiVIsAtg~  189 (269)
                      ||+|.|++|.+|+.++..|.++|.+|+++.|+...        ..+.+.++|.||+..+.
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~l~~~d~vihla~~   61 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGRITWDELAASGLPSCDAAVNLAGE   61 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTEEEHHHHHHHCCCSCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCeeecchhhHhhccCCCEEEEeccC
Confidence            69999999999999999999999999999886421        23567899999987763

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.36  E-value=0.0025  Score=57.17  Aligned_cols=88  Identities=15%  Similarity=0.010  Sum_probs=58.1

Q ss_pred             HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------CCHhhhc-----
Q 024306          123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------KNPEQIT-----  177 (269)
Q Consensus       123 ~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------~~l~~~~-----  177 (269)
                      ++..+.+..---.|++|+|.|+++.+|..+++.+..+|++|+++.++.                    .++.+.+     
T Consensus       133 a~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~  212 (333)
T 1v3u_A          133 AYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASP  212 (333)
T ss_dssp             HHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCT
T ss_pred             HHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhC
Confidence            344453332334799999999955569999999999999988886541                    1222222     


Q ss_pred             CCCCEEEeccCCCCc-ccCCCcCCCcEEEEeeec
Q 024306          178 SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       178 ~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~~  210 (269)
                      ...|++|+++|.+.+ -.-+.++++-.++-++..
T Consensus       213 ~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~  246 (333)
T 1v3u_A          213 DGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAI  246 (333)
T ss_dssp             TCEEEEEESSCHHHHHHHHTTEEEEEEEEECCCC
T ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCEEEEEecc
Confidence            247999999986432 122456777777777753

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.36  E-value=0.0042  Score=55.97  Aligned_cols=70  Identities=16%  Similarity=0.189  Sum_probs=51.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------------------------CCHhhhcCCCCEEEecc
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------------------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------------------------~~l~~~~~~aDiVIsAt  187 (269)
                      .+|.|||+|.+ |..++..|.+.|.+|+++.++.                             .++.+.++++|+||.++
T Consensus         5 mki~iiG~G~~-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v   83 (359)
T 1bg6_A            5 KTYAVLGLGNG-GHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   83 (359)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CeEEEECCCHH-HHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeC
Confidence            58999999876 9999999999999999997641                             12334567899999999


Q ss_pred             CCCCc---cc--CCCcCCCcEEEEe
Q 024306          188 GVANL---VR--GSWLKPGAVVLDV  207 (269)
Q Consensus       188 g~p~~---i~--~~~~~~g~vViDv  207 (269)
                      +....   +.  ...++++++|+++
T Consensus        84 ~~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           84 PAIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             CGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             CchHHHHHHHHHHHhCCCCCEEEEc
Confidence            85431   11  1245677777776

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.36  E-value=0.0037  Score=54.91  Aligned_cols=37  Identities=16%  Similarity=0.229  Sum_probs=34.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+++++.|+++|++|.++.|.
T Consensus         2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   38 (281)
T 3zv4_A            2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKS   38 (281)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            4789999999998888999999999999999999775

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.35  E-value=0.0052  Score=48.86  Aligned_cols=54  Identities=17%  Similarity=0.236  Sum_probs=42.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------------CHhh-hcCCCCEEEeccC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------------NPEQ-ITSEADIVIAAAG  188 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------------~l~~-~~~~aDiVIsAtg  188 (269)
                      ..++++|+|+|.. |+.++..|.+.|.+|+++.+..+                         .+.+ .+.+||.||.+++
T Consensus         2 ~~~~vlI~G~G~v-G~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~   80 (153)
T 1id1_A            2 RKDHFIVCGHSIL-AINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSD   80 (153)
T ss_dssp             CCSCEEEECCSHH-HHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred             CCCcEEEECCCHH-HHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecC
Confidence            3578999999775 99999999999999999977520                         0122 2778999999988


Q ss_pred             C
Q 024306          189 V  189 (269)
Q Consensus       189 ~  189 (269)
                      .
T Consensus        81 ~   81 (153)
T 1id1_A           81 N   81 (153)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.35  E-value=0.0034  Score=54.85  Aligned_cols=38  Identities=18%  Similarity=0.298  Sum_probs=34.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+++++.|+++|++|.++.+.
T Consensus        23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~   60 (266)
T 3grp_A           23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTR   60 (266)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999998888999999999999999998765

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=96.35  E-value=0.0056  Score=53.82  Aligned_cols=33  Identities=15%  Similarity=0.073  Sum_probs=30.3

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      ||+|+|.|++|.+|+.++..|+++|++|+++.|
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r   33 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIR   33 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEe
Confidence            689999999998999999999999999988765

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.35  E-value=0.0055  Score=53.59  Aligned_cols=39  Identities=26%  Similarity=0.307  Sum_probs=34.4

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..+++||+++|.|+++-+|+++++.|+++|++|.++.++
T Consensus        26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~   64 (271)
T 3v2g_A           26 SISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVN   64 (271)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            357899999999998888999999999999999888443

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=96.34  E-value=0.0033  Score=55.33  Aligned_cols=38  Identities=24%  Similarity=0.263  Sum_probs=33.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|.
T Consensus        25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~   62 (277)
T 3gvc_A           25 PDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADID   62 (277)
T ss_dssp             --CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35899999999998888999999999999999999765

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.33  E-value=0.0071  Score=53.46  Aligned_cols=37  Identities=19%  Similarity=0.048  Sum_probs=32.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++++|+|.|++|.+|+.++..|+++|++|+++.|.
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   44 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3578999999998889999999999999999987653

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=96.33  E-value=0.043  Score=50.57  Aligned_cols=147  Identities=12%  Similarity=0.050  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCC--CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccc
Q 024306           22 SQTYVRNKIKACEEVGIKSIVTEFADGC--TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFH   99 (269)
Q Consensus        22 s~~y~~~~~~~~~~~Gi~~~~~~~~~~~--~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~   99 (269)
                      |-.=--+-..++.++|.++.++.-....  .-|-+.+.++-|+.-  +|+|.+--|-.      ..+..+....   ++-
T Consensus        78 STRTR~SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~--~D~IviR~~~~------~~~~~lA~~s---~vP  146 (359)
T 2w37_A           78 STRTRSAFTTASIDLGAHPEYLGQNDIQLGKKESTSDTAKVLGSM--FDGIEFRGFKQ------SDAEILARDS---GVP  146 (359)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECTTTCCTTTSSCHHHHHHHHHHH--CSEEEEESSCH------HHHHHHHHHS---SSC
T ss_pred             CccHHHHHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHh--cCEEEEecCCh------HHHHHHHHhC---CCC
Confidence            3333334667999999999988532210  124566777767663  68898887732      2222221111   234


Q ss_pred             cceecccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC--------
Q 024306          100 PLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL--------  169 (269)
Q Consensus       100 ~~n~g~l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~--------  169 (269)
                      .+|.|       ++.+.||=+.+ ++.+.++.+ .++|.+++++|-+ ..|++.++..++..|++|+++...        
T Consensus       147 VINa~-------~~~~HPtQaLaDl~Ti~E~~g-~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~~~~  218 (359)
T 2w37_A          147 VWNGL-------TDEWHPTQMLADFMTVKENFG-KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPTEET  218 (359)
T ss_dssp             EEEEE-------CSSCCHHHHHHHHHHHHHHHS-CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHH
T ss_pred             EEcCC-------CCCCCccHHHHHHHHHHHHhC-CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCCHHH
Confidence            55642       24466888887 455555554 7999999999997 567999999999999999999543        


Q ss_pred             -----------------CCCHhhhcCCCCEEEecc
Q 024306          170 -----------------TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       170 -----------------t~~l~~~~~~aDiVIsAt  187 (269)
                                       +.++.+.+++||+|.+-+
T Consensus       219 ~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~  253 (359)
T 2w37_A          219 QNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTDV  253 (359)
T ss_dssp             HHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEcc
Confidence                             235667899999999743

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.33  E-value=0.0019  Score=54.55  Aligned_cols=57  Identities=21%  Similarity=0.209  Sum_probs=44.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------CHh---hhcCCCCEEEeccCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------NPE---QITSEADIVIAAAGV  189 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------~l~---~~~~~aDiVIsAtg~  189 (269)
                      ++++|+++|.|+++-+|+++++.|+++|++|.++.|...       ++.   +.+..-|++|+..|.
T Consensus         3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~D~~~~~~v~~~~~~~g~id~lv~nAg~   69 (223)
T 3uce_A            3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTGLDISDEKSVYHYFETIGAFDHLIVTAGS   69 (223)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGTCCTTCHHHHHHHHHHHCSEEEEEECCCC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcccCCCCHHHHHHHHHHhCCCCEEEECCCC
Confidence            368999999999888899999999999999999876531       122   223467999988884

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=96.33  E-value=0.0052  Score=54.29  Aligned_cols=53  Identities=11%  Similarity=0.153  Sum_probs=42.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------------CHhhhcCCCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------------~l~~~~~~aDiVIsAtg~  189 (269)
                      ++|+|+|++|.+|+.++..|.++|++|+++.|...                         ++.+.++.+|+||++++.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~   89 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAF   89 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence            68999999888899999999999999999877642                         123556778999988774

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.32  E-value=0.0031  Score=54.59  Aligned_cols=39  Identities=15%  Similarity=0.164  Sum_probs=35.2

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..+++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         7 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   45 (256)
T 3gaf_A            7 PFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLK   45 (256)
T ss_dssp             TTCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            356899999999998888999999999999999998765

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.32  E-value=0.0037  Score=56.16  Aligned_cols=77  Identities=18%  Similarity=0.163  Sum_probs=54.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHh----hhc--CCCCEEEeccC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE----QIT--SEADIVIAAAG  188 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~----~~~--~~aDiVIsAtg  188 (269)
                      -.|++|+|.|++|.+|..+++.+..+|++|+++.++.                   .+..    +..  ...|++|+++|
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~g  223 (333)
T 1wly_A          144 KPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIG  223 (333)
T ss_dssp             CTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECSC
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEECCc
Confidence            3789999999755569999999999999988886542                   1111    112  25799999998


Q ss_pred             CCCc-ccCCCcCCCcEEEEeeec
Q 024306          189 VANL-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       189 ~p~~-i~~~~~~~g~vViDv~~~  210 (269)
                      .+.+ -.-+.++++-.++.++..
T Consensus       224 ~~~~~~~~~~l~~~G~iv~~g~~  246 (333)
T 1wly_A          224 KDTLQKSLDCLRPRGMCAAYGHA  246 (333)
T ss_dssp             TTTHHHHHHTEEEEEEEEECCCT
T ss_pred             HHHHHHHHHhhccCCEEEEEecC
Confidence            7322 123456777778888754

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.32  E-value=0.0035  Score=55.16  Aligned_cols=54  Identities=11%  Similarity=0.183  Sum_probs=40.0

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcC--CCCEEEeccCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITS--EADIVIAAAGV  189 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~--~aDiVIsAtg~  189 (269)
                      +++|+|.|++|.+|+.++..|.++|++|+++.|..             .++.+.++  +.|+||...+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   70 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAE   70 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------CHHHHHHHCCSEEEECC--
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCCCCeEEecCCCHHHHHHHHHhhCCCEEEECCcc
Confidence            68999999988899999999999999999887542             12334454  37999988874

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=96.31  E-value=0.014  Score=53.13  Aligned_cols=163  Identities=11%  Similarity=0.083  Sum_probs=107.9

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC--CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceecc
Q 024306           28 NKIKACEEVGIKSIVTEFADGC--TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGN  105 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~--~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~  105 (269)
                      +-..++.++|.++.++.-....  .-|-+.+.++-|+.-  +|+|.+-.|-.      ..+..+..  -. .+-.+|.| 
T Consensus        63 SFe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~--~D~iviR~~~~------~~~~~lA~--~~-~vPVINa~-  130 (321)
T 1oth_A           63 STETGFALLGGHPCFLTTQDIHLGVNESLTDTARVLSSM--ADAVLARVYKQ------SDLDTLAK--EA-SIPIINGL-  130 (321)
T ss_dssp             HHHHHHHHTTCEEEEEETTTSCBTTTBCHHHHHHHHHHH--CSEEEEECSCH------HHHHHHHH--HC-SSCEEESC-
T ss_pred             HHHHHHHHcCCeEEEECCCcCcCCCCCCHHHHHHHHHHh--CCEEEEeCCCh------hHHHHHHH--hC-CCCEEcCC-
Confidence            3567899999999988643210  134566777777663  68899887732      22222211  11 23345632 


Q ss_pred             cccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------
Q 024306          106 LAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------  170 (269)
Q Consensus       106 l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------  170 (269)
                            .+.+.||=+.+ ++.+.++. ..++|.+|+++|-+..|++.++..+...|++|+++....              
T Consensus       131 ------~~~~HPtQaLaDl~Ti~e~~-g~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~  203 (321)
T 1oth_A          131 ------SDLYHPIQILADYLTLQEHY-SSLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQY  203 (321)
T ss_dssp             ------CSSCCHHHHHHHHHHHHHHH-SCCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             ------CCCCCcHHHHHHHHHHHHHh-CCcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHHHHHHHHHH
Confidence                  24566998877 45555554 479999999999988889999999999999999996432              


Q ss_pred             -----------CCHhhhcCCCCEEEecc----CCC-----------Cc-ccCCCc---CCCcEEEEeee
Q 024306          171 -----------KNPEQITSEADIVIAAA----GVA-----------NL-VRGSWL---KPGAVVLDVGT  209 (269)
Q Consensus       171 -----------~~l~~~~~~aDiVIsAt----g~p-----------~~-i~~~~~---~~g~vViDv~~  209 (269)
                                 .++.+.+++||+|.+-+    |..           .+ ++.+.+   +++++|+=..-
T Consensus       204 a~~~G~~~~~~~d~~eav~~aDvvy~d~w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~lP  272 (321)
T 1oth_A          204 AKENGTKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLP  272 (321)
T ss_dssp             HHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSC
T ss_pred             HHHcCCeEEEEECHHHHhccCCEEEEeccccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCCC
Confidence                       34567899999999844    311           12 455543   56777776654

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.31  E-value=0.0038  Score=57.00  Aligned_cols=90  Identities=16%  Similarity=0.087  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhhc----
Q 024306          121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQIT----  177 (269)
Q Consensus       121 ~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~----  177 (269)
                      ..+...+.+..---.|++|+|+|++|.+|..+++++...|++|+.+.+..                   .++.+.+    
T Consensus       149 ~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~  228 (362)
T 2c0c_A          149 TTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEY  228 (362)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhc
Confidence            33445554443334799999999755579999999999999988876541                   1222222    


Q ss_pred             -CCCCEEEeccCCCCc-ccCCCcCCCcEEEEeeec
Q 024306          178 -SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       178 -~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~~  210 (269)
                       ..+|+||+++|.+.+ -.-+.++++-.++.++..
T Consensus       229 ~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~g~~  263 (362)
T 2c0c_A          229 PEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFI  263 (362)
T ss_dssp             TTCEEEEEECSCTHHHHHHHHHEEEEEEEEECCCG
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhcCCEEEEEeCC
Confidence             247999988886321 122346666667777754

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.31  E-value=0.007  Score=54.94  Aligned_cols=54  Identities=28%  Similarity=0.456  Sum_probs=43.2

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHhhhcCCCCEEEeccC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAG  188 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~aDiVIsAtg  188 (269)
                      .++|.|||+|. +|.+++..|+..|. +|++..+..                          .++ +.+++||+||.++|
T Consensus        14 ~~kI~ViGaG~-vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg   91 (328)
T 2hjr_A           14 RKKISIIGAGQ-IGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAG   91 (328)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCC
Confidence            36899999966 59999999999997 888886542                          234 67899999999998


Q ss_pred             CCC
Q 024306          189 VAN  191 (269)
Q Consensus       189 ~p~  191 (269)
                      .|.
T Consensus        92 ~p~   94 (328)
T 2hjr_A           92 VPR   94 (328)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            653

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.31  E-value=0.0043  Score=54.94  Aligned_cols=36  Identities=22%  Similarity=0.140  Sum_probs=31.9

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      ++++|+|.|++|.+|+.++..|+++|++|+++.|..
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~   37 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRS   37 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCC
Confidence            578999999988899999999999999999987653

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.30  E-value=0.0063  Score=53.46  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=33.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      .++++|+++|.|+++-+|++++..|+++|++|.++.+
T Consensus        21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r   57 (281)
T 3v2h_A           21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGF   57 (281)
T ss_dssp             -CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            3678999999999888899999999999999999877

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=96.29  E-value=0.0043  Score=56.05  Aligned_cols=72  Identities=18%  Similarity=0.207  Sum_probs=53.7

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCC-------CEEEEEeCCCC---------------------------------CHhh
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHH-------ATVSIVHALTK---------------------------------NPEQ  175 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~g-------a~Vti~~~~t~---------------------------------~l~~  175 (269)
                      .++|.|||+|.+ |.+++..|++.|       .+|++++++..                                 ++.+
T Consensus         8 ~mkI~iIG~G~m-G~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (354)
T 1x0v_A            8 SKKVCIVGSGNW-GSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQ   86 (354)
T ss_dssp             CEEEEEECCSHH-HHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHH
T ss_pred             CCeEEEECCCHH-HHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHH
Confidence            358999999886 999999999988       78999977543                                 1234


Q ss_pred             hcCCCCEEEeccCCCC---ccc--CCCcCCCcEEEEee
Q 024306          176 ITSEADIVIAAAGVAN---LVR--GSWLKPGAVVLDVG  208 (269)
Q Consensus       176 ~~~~aDiVIsAtg~p~---~i~--~~~~~~g~vViDv~  208 (269)
                      .+++||+||.+++...   .+.  ...++++++|+++.
T Consensus        87 ~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~  124 (354)
T 1x0v_A           87 AAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLI  124 (354)
T ss_dssp             HHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECC
T ss_pred             HHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEEC
Confidence            4678999999998532   111  23467889999985

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.29  E-value=0.0033  Score=54.20  Aligned_cols=37  Identities=32%  Similarity=0.312  Sum_probs=30.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||.++|.|+++-+|+++++.|+++|++|.++.+.
T Consensus         6 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   42 (257)
T 3tl3_A            6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIR   42 (257)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred             eecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCc
Confidence            5789999999998888999999999999999998765

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.29  E-value=0.0036  Score=56.64  Aligned_cols=58  Identities=14%  Similarity=0.114  Sum_probs=47.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhC-CC-EEEEEeCCC-------------------------CCHhhhcCCCCEEEe
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRH-HA-TVSIVHALT-------------------------KNPEQITSEADIVIA  185 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga-~Vti~~~~t-------------------------~~l~~~~~~aDiVIs  185 (269)
                      .+++|+|+|.|++|.+|+.++..|+++ |+ +|+++.|..                         ..+.+.++..|+||.
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih   97 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIH   97 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence            368999999999998999999999999 97 899987651                         123456778999998


Q ss_pred             ccCCC
Q 024306          186 AAGVA  190 (269)
Q Consensus       186 Atg~p  190 (269)
                      +++..
T Consensus        98 ~Aa~~  102 (344)
T 2gn4_A           98 AAALK  102 (344)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            88743

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.29  E-value=0.0094  Score=50.36  Aligned_cols=35  Identities=23%  Similarity=0.163  Sum_probs=31.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~   35 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGYALALGARS   35 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            47899999998888999999999999999998775

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.29  E-value=0.0041  Score=54.42  Aligned_cols=54  Identities=13%  Similarity=0.180  Sum_probs=43.2

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------------------CHhhhcCCCCEEEe
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------------------NPEQITSEADIVIA  185 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------------------~l~~~~~~aDiVIs  185 (269)
                      .++|+|+|++|.+|+.++..|.++|.+|+++.|...                              ++.+.++.+|+||+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            478999999888899999999999999998877521                              12345677899998


Q ss_pred             ccCC
Q 024306          186 AAGV  189 (269)
Q Consensus       186 Atg~  189 (269)
                      +++.
T Consensus        84 ~a~~   87 (308)
T 1qyc_A           84 TVGS   87 (308)
T ss_dssp             CCCG
T ss_pred             CCcc
Confidence            8774

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.28  E-value=0.0039  Score=53.95  Aligned_cols=38  Identities=26%  Similarity=0.226  Sum_probs=34.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+.+++.|+++|++|.++.|+
T Consensus        25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~   62 (262)
T 3rkr_A           25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARD   62 (262)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            45789999999998888999999999999999998775

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.28  E-value=0.005  Score=53.76  Aligned_cols=38  Identities=26%  Similarity=0.273  Sum_probs=34.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+++++.|+++|++|.++.+.
T Consensus        24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~   61 (269)
T 4dmm_A           24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYAS   61 (269)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            56899999999998888999999999999999888663

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=96.26  E-value=0.03  Score=51.60  Aligned_cols=142  Identities=13%  Similarity=0.069  Sum_probs=94.9

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC--CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceecc
Q 024306           28 NKIKACEEVGIKSIVTEFADGC--TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGN  105 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~--~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~  105 (269)
                      +-..+++++|.++.+..-....  .-|-+.+.++-|..-  +|+|.+--|-.      ..++.+.....   + |++.  
T Consensus        87 SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~--~D~IviR~~~~------~~~~~la~~s~---v-PVIN--  152 (358)
T 4h31_A           87 AFEVAAFDQGAQVTYIGPSGSQIGDKESMKDTARVLGRM--YDGIQYRGFGQ------AIVEELGAFAG---V-PVWN--  152 (358)
T ss_dssp             HHHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHHHH--CSEEEEECSCH------HHHHHHHHHSS---S-CEEE--
T ss_pred             HHHHHHHHcCCeEEECCcccccccCccchhHHHHHhhcc--CceeEecccch------hHHHHhhhhcc---C-ceEC--
Confidence            3566899999999876543211  235577777777774  78998876622      22333222111   1 3332  


Q ss_pred             cccCCCCCccccCCHHH-HHHHHHHhC-CCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC-------------
Q 024306          106 LAMRGREPLFIPCTPKG-CIELLIRSG-VEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL-------------  169 (269)
Q Consensus       106 l~~g~~~~~~~p~t~~g-~~~~l~~~~-~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~-------------  169 (269)
                         |. .+...||=+.+ ++.+.++.+ ..++|.+|+++|-+ ..|++..+.++...|++|+++...             
T Consensus       153 ---G~-g~~~HPtQaL~Dl~Ti~e~~~~~~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~  228 (358)
T 4h31_A          153 ---GL-TDEFHPTQILADFLTMLEHSQGKALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDEELVAACQ  228 (358)
T ss_dssp             ---SC-CSSCCHHHHHHHHHHHHHTTTTCCGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEESCGGGSCCHHHHHHHH
T ss_pred             ---CC-CcCCCchHHHHHHHHHHHHhcCCCcCceEEEecCCCCcccchHHHHHHHhcCceEEEeCCcccCCCHHHHHHHH
Confidence               21 34556887777 444455444 37999999999965 457999999999999999999643             


Q ss_pred             ------------CCCHhhhcCCCCEEEecc
Q 024306          170 ------------TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       170 ------------t~~l~~~~~~aDiVIsAt  187 (269)
                                  +.++.+.+++||+|.+-+
T Consensus       229 ~~~~~~g~~v~~~~d~~eav~~aDvvyt~~  258 (358)
T 4h31_A          229 AIAKQTGGKITLTENVAEGVQGCDFLYTDV  258 (358)
T ss_dssp             HHHHHHTCEEEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHHcCCcceeccCHHHHhccCcEEEEEE
Confidence                        246778999999999543

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.26  E-value=0.0047  Score=53.19  Aligned_cols=37  Identities=19%  Similarity=0.232  Sum_probs=32.3

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .-+|+++|.|+++-+|+.+++.|+++|++|.++.|+.
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~   56 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRE   56 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3479999999988889999999999999999998764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.26  E-value=0.0062  Score=52.79  Aligned_cols=53  Identities=9%  Similarity=-0.007  Sum_probs=41.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhh----------------cCCCCEEEeccCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQI----------------TSEADIVIAAAGV  189 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~----------------~~~aDiVIsAtg~  189 (269)
                      .++|+|.|+ |.+|+.++..|.++|.+|+++.|........                +.++|+||.+++.
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCCC
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCCc
Confidence            378999998 6679999999999999999998874322110                6778999988773

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.25  E-value=0.005  Score=54.64  Aligned_cols=38  Identities=26%  Similarity=0.330  Sum_probs=34.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        27 ~~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~   64 (301)
T 3tjr_A           27 SGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVD   64 (301)
T ss_dssp             CCSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            45899999999998888999999999999999998775

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.25  E-value=0.0051  Score=56.40  Aligned_cols=57  Identities=9%  Similarity=0.293  Sum_probs=43.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCC-----------------------CCCHhhhcCCCCEEEeccC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHAL-----------------------TKNPEQITSEADIVIAAAG  188 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~-----------------------t~~l~~~~~~aDiVIsAtg  188 (269)
                      +.+++|+|||++|.||.++++.|+.+|.  +|.+++..                       +.++.+.+++||+||.+.|
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            3578999999855569999999998883  68888543                       1356678999999999988


Q ss_pred             CC
Q 024306          189 VA  190 (269)
Q Consensus       189 ~p  190 (269)
                      .|
T Consensus        86 ~p   87 (343)
T 3fi9_A           86 AP   87 (343)
T ss_dssp             --
T ss_pred             CC
Confidence            65

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.24  E-value=0.0059  Score=52.95  Aligned_cols=38  Identities=13%  Similarity=0.088  Sum_probs=34.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   44 (264)
T 3ucx_A            7 GLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAART   44 (264)
T ss_dssp             CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC
Confidence            34789999999998888999999999999999998775

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.23  E-value=0.009  Score=53.97  Aligned_cols=94  Identities=17%  Similarity=0.158  Sum_probs=63.6

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC-CCEEEEEeCCC-------------------CC---
Q 024306          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALT-------------------KN---  172 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t-------------------~~---  172 (269)
                      +||....++..+++.++ -.|++|+|+|+|+.+|..+++++... |++|+++.++.                   .+   
T Consensus       152 l~~~~~ta~~~l~~~~~-~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  230 (347)
T 1jvb_A          152 LTCSGITTYRAVRKASL-DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLA  230 (347)
T ss_dssp             GGTHHHHHHHHHHHTTC-CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHH
T ss_pred             chhhHHHHHHHHHhcCC-CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHH
Confidence            34544445566655333 37899999999966799999999999 99988876541                   12   


Q ss_pred             -Hhhhc--CCCCEEEeccCCCCcc--cCCCcCCCcEEEEeeec
Q 024306          173 -PEQIT--SEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       173 -l~~~~--~~aDiVIsAtg~p~~i--~~~~~~~g~vViDv~~~  210 (269)
                       +.+..  ...|++|+++|.+..+  .-+.++++-.++.++..
T Consensus       231 ~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~  273 (347)
T 1jvb_A          231 EIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLF  273 (347)
T ss_dssp             HHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSS
T ss_pred             HHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEECCC
Confidence             12233  3589999999975332  23457777777777754

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.22  E-value=0.0035  Score=54.91  Aligned_cols=38  Identities=24%  Similarity=0.203  Sum_probs=34.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|.
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~   59 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTD   59 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999998888999999999999999988664

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.20  E-value=0.0066  Score=57.01  Aligned_cols=73  Identities=14%  Similarity=0.152  Sum_probs=53.6

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------------CCHhhhcCCCCEE
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------------KNPEQITSEADIV  183 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------------~~l~~~~~~aDiV  183 (269)
                      +|.|||.|.+ |.+++..|++.|.+|++++++.                                  .++.+.+++||+|
T Consensus         2 kI~VIG~G~v-G~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            2 RISIFGLGYV-GAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             EEEEECCSTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             EEEEECCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            6899999886 9999999999999999997641                                  1233456789999


Q ss_pred             EeccCCCCc---------cc------CCCcCC---CcEEEEeeecC
Q 024306          184 IAAAGVANL---------VR------GSWLKP---GAVVLDVGTCP  211 (269)
Q Consensus       184 IsAtg~p~~---------i~------~~~~~~---g~vViDv~~~~  211 (269)
                      |.+++.|.-         +.      ...+++   +++|++....+
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~  126 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVL  126 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCC
T ss_pred             EEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcC
Confidence            999986541         11      113567   88898875444

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=96.20  E-value=0.019  Score=54.36  Aligned_cols=84  Identities=21%  Similarity=0.302  Sum_probs=63.4

Q ss_pred             HHHHHHHhCCCCccceEEEEcCC---------cccHHHHHHHHHhCCCEEEEEeCCC---------------CCHhhhcC
Q 024306          123 CIELLIRSGVEIMGKNAVVIGRS---------NIVGLPTSLLLQRHHATVSIVHALT---------------KNPEQITS  178 (269)
Q Consensus       123 ~~~~l~~~~~~l~gk~v~ViG~g---------g~vg~~~a~~L~~~ga~Vti~~~~t---------------~~l~~~~~  178 (269)
                      +++.+++...+++|++|+|+|-.         .+-+..++..|.++|++|.+.....               .++.+.++
T Consensus       320 vv~~l~~~~~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a~~  399 (444)
T 3vtf_A          320 AVQLLEERLGGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALLD  399 (444)
T ss_dssp             HHHHHHHHHTCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHHHH
T ss_pred             HHHHHHHHccccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHHHh
Confidence            45556666667899999999943         2226789999999999999997542               35667889


Q ss_pred             CCCEEEeccCCCCcccCCCcCCCcEEEEee
Q 024306          179 EADIVIAAAGVANLVRGSWLKPGAVVLDVG  208 (269)
Q Consensus       179 ~aDiVIsAtg~p~~i~~~~~~~g~vViDv~  208 (269)
                      +||.||-+|..+.|-..+|  ++.+|+|..
T Consensus       400 ~aDavvi~t~h~ef~~ld~--~~~vv~D~R  427 (444)
T 3vtf_A          400 QVEGVIIATAWPQYEGLDY--RGKVVVDGR  427 (444)
T ss_dssp             HCSEEEECSCCGGGGGSCC--TTCEEEESS
T ss_pred             CCCEEEEccCCHHHhCCCc--CCCEEEECC
Confidence            9999999999877644444  467899954

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.19  E-value=0.006  Score=53.93  Aligned_cols=52  Identities=19%  Similarity=0.205  Sum_probs=44.3

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCCC---------------CCHhhhcCCCCEEEeccC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT---------------KNPEQITSEADIVIAAAG  188 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~t---------------~~l~~~~~~aDiVIsAtg  188 (269)
                      .++|.|||+|.+ |.+++..|.+.|.   +|++++++.               .+..+.++++|+||.+++
T Consensus         3 ~~~I~iIG~G~m-G~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~   72 (280)
T 3tri_A            3 TSNITFIGGGNM-ARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVK   72 (280)
T ss_dssp             CSCEEEESCSHH-HHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSC
T ss_pred             CCEEEEEcccHH-HHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeC
Confidence            468999999887 9999999999997   799998763               245677889999999995

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=96.19  E-value=0.0096  Score=52.15  Aligned_cols=53  Identities=21%  Similarity=0.138  Sum_probs=41.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------CHhhhcCCCCEEEeccCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~~~~~~aDiVIsAtg~p  190 (269)
                      ++|+|.|++|.+|+.++..|.++|++|+++.|...                    ++.+.++. |+||+..+.+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~~~   73 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYSWGAGIKG-DVVFHFAANP   73 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGSCTTSEEECCCTTSTTTTTTCCC-SEEEECCSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhcCCCceEEECccccHHHHhhcCC-CEEEECCCCC
Confidence            47999999888999999999999999999876431                    12233444 9999887743

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=96.19  E-value=0.0036  Score=57.40  Aligned_cols=71  Identities=13%  Similarity=0.155  Sum_probs=52.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC-------CEEEEEeCCCC---------------------------------CHhhh
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHH-------ATVSIVHALTK---------------------------------NPEQI  176 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~g-------a~Vti~~~~t~---------------------------------~l~~~  176 (269)
                      ++|.|||+|.+ |.+++..|++.|       .+|++++++..                                 ++.+.
T Consensus        22 ~kI~iIGaG~m-G~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea  100 (375)
T 1yj8_A           22 LKISILGSGNW-ASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASV  100 (375)
T ss_dssp             BCEEEECCSHH-HHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHH
T ss_pred             CEEEEECcCHH-HHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHH
Confidence            47999999886 999999999988       88999987543                                 12244


Q ss_pred             cCCCCEEEeccCCCC---c---ccCC---CcCCCcEEEEee
Q 024306          177 TSEADIVIAAAGVAN---L---VRGS---WLKPGAVVLDVG  208 (269)
Q Consensus       177 ~~~aDiVIsAtg~p~---~---i~~~---~~~~g~vViDv~  208 (269)
                      +++||+||.+++...   .   +.+.   .++++++|+++.
T Consensus       101 ~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~  141 (375)
T 1yj8_A          101 INDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLT  141 (375)
T ss_dssp             HTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECC
T ss_pred             HcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeC
Confidence            678999999998422   1   2220   577888998875

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.18  E-value=0.0088  Score=52.49  Aligned_cols=37  Identities=19%  Similarity=0.174  Sum_probs=33.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      .+++||.++|.|+++-+|++++..|+++|++|.++.+
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~   61 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGI   61 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeC
Confidence            4578999999999888899999999999999998875

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.18  E-value=0.0044  Score=52.25  Aligned_cols=54  Identities=22%  Similarity=0.303  Sum_probs=42.6

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------CHhhhcC------CCCEEEeccCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPEQITS------EADIVIAAAGV  189 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~l~~~~~------~aDiVIsAtg~  189 (269)
                      +|+++|.|+++-+|+.++..|+++|++|.++.|...               ++.+.++      ..|++|+..|.
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~ag~   76 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAGV   76 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCSSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCccccceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEEcccc
Confidence            689999999988999999999999999999877531               1223333      57999988874

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.18  E-value=0.0084  Score=54.28  Aligned_cols=52  Identities=21%  Similarity=0.333  Sum_probs=41.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHhhhcCCCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      ++|+|||+|. +|.+++..|+..|. +|.++....                          .++ +.+++||+||.++|.
T Consensus         5 ~kI~VIGaG~-vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~   82 (322)
T 1t2d_A            5 AKIVLVGSGM-IGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGF   82 (322)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSC
T ss_pred             CEEEEECCCH-HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            5899999966 59999999999996 887775431                          244 678999999999986


Q ss_pred             C
Q 024306          190 A  190 (269)
Q Consensus       190 p  190 (269)
                      |
T Consensus        83 p   83 (322)
T 1t2d_A           83 T   83 (322)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.17  E-value=0.0053  Score=53.48  Aligned_cols=37  Identities=22%  Similarity=-0.024  Sum_probs=32.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +++|+++|.|+++-+|++++..|+++|++|.++.|..
T Consensus         3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   39 (281)
T 3m1a_A            3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRT   39 (281)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4789999999988889999999999999999987763

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.16  E-value=0.0043  Score=48.78  Aligned_cols=53  Identities=13%  Similarity=0.132  Sum_probs=41.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------C---Hhh-hcCCCCEEEeccCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------N---PEQ-ITSEADIVIAAAGVA  190 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------~---l~~-~~~~aDiVIsAtg~p  190 (269)
                      .+++|+|.|.. |+.++..|.++|..|+++.+...                  +   +.+ .+.+||+||.+++..
T Consensus         8 ~~viIiG~G~~-G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~   82 (140)
T 3fwz_A            8 NHALLVGYGRV-GSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNG   82 (140)
T ss_dssp             SCEEEECCSHH-HHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCH
T ss_pred             CCEEEECcCHH-HHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCCh
Confidence            57999999886 99999999999999999976521                  1   111 257899999998853

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.16  E-value=0.0057  Score=58.25  Aligned_cols=71  Identities=11%  Similarity=0.136  Sum_probs=53.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------------------CHhhhcCCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------------NPEQITSEAD  181 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------------------~l~~~~~~aD  181 (269)
                      ++|.|||+|-+ |.++|..|++.|.+|++.+++..                                   ++ +.+++||
T Consensus        55 ~kVaVIGaG~M-G~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl-~al~~aD  132 (460)
T 3k6j_A           55 NSVAIIGGGTM-GKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDF-HKLSNCD  132 (460)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCG-GGCTTCS
T ss_pred             CEEEEECCCHH-HHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCH-HHHccCC
Confidence            68999999886 99999999999999999976521                                   22 3578999


Q ss_pred             EEEeccCCC-C----ccc--CCCcCCCcEEEEeee
Q 024306          182 IVIAAAGVA-N----LVR--GSWLKPGAVVLDVGT  209 (269)
Q Consensus       182 iVIsAtg~p-~----~i~--~~~~~~g~vViDv~~  209 (269)
                      +||.|++.. .    ++.  ...+++++++++...
T Consensus       133 lVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTS  167 (460)
T 3k6j_A          133 LIVESVIEDMKLKKELFANLENICKSTCIFGTNTS  167 (460)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCS
T ss_pred             EEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCC
Confidence            999999842 1    111  234678888876543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.16  E-value=0.0066  Score=54.62  Aligned_cols=93  Identities=16%  Similarity=0.109  Sum_probs=61.2

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhh
Q 024306          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQI  176 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~  176 (269)
                      +||....+...++..+ .-.|++|+|+|+|+ +|..+++++..+|++|+.+.++.                   .++.+.
T Consensus       148 l~~~~~ta~~~l~~~~-~~~g~~VlV~GaG~-vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~  225 (340)
T 3s2e_A          148 ILCAGVTVYKGLKVTD-TRPGQWVVISGIGG-LGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAW  225 (340)
T ss_dssp             GGTHHHHHHHHHHTTT-CCTTSEEEEECCST-THHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHH
T ss_pred             ccchhHHHHHHHHHcC-CCCCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHH
Confidence            3444444566664332 24799999999977 59999999999999988875531                   122222


Q ss_pred             c----CCCCEEEeccCCCCcc--cCCCcCCCcEEEEeeec
Q 024306          177 T----SEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       177 ~----~~aDiVIsAtg~p~~i--~~~~~~~g~vViDv~~~  210 (269)
                      +    ..+|+||.++|.+..+  .-+.++++-.++.++..
T Consensus       226 ~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~  265 (340)
T 3s2e_A          226 LQKEIGGAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLP  265 (340)
T ss_dssp             HHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCC
T ss_pred             HHHhCCCCCEEEEeCCCHHHHHHHHHHhccCCEEEEeCCC
Confidence            2    2578888888765432  22356777777777754

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=96.15  E-value=0.0071  Score=54.30  Aligned_cols=57  Identities=18%  Similarity=0.302  Sum_probs=41.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCCC--------------------HhhhcC-----CCCEEEec
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTKN--------------------PEQITS-----EADIVIAA  186 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~~--------------------l~~~~~-----~aDiVIsA  186 (269)
                      ++++++|+|.|++|.+|+.++..|.++| ++|+++.|....                    +.+.++     ..|+||..
T Consensus        43 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~Vih~  122 (357)
T 2x6t_A           43 GIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHE  122 (357)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGGGGTTTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchhhcccCceEeeecCcHHHHHHHHhhcccCCCCEEEEC
Confidence            3578999999999989999999999999 899998765321                    123344     58999988


Q ss_pred             cCC
Q 024306          187 AGV  189 (269)
Q Consensus       187 tg~  189 (269)
                      .+.
T Consensus       123 A~~  125 (357)
T 2x6t_A          123 GAC  125 (357)
T ss_dssp             CSC
T ss_pred             Ccc
Confidence            874

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=96.15  E-value=0.0058  Score=53.18  Aligned_cols=38  Identities=29%  Similarity=0.276  Sum_probs=33.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+++++.|+++|++|.++.++
T Consensus        14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~   51 (270)
T 3is3_A           14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYAN   51 (270)
T ss_dssp             TCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            35899999999998888999999999999999887543

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.14  E-value=0.0099  Score=54.03  Aligned_cols=55  Identities=24%  Similarity=0.295  Sum_probs=43.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHhhhcCCCCEEEec
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAA  186 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~aDiVIsA  186 (269)
                      .+..+|.|||+|.+ |.+++..|+..|. +|++++...                          .+ .+.+++||+||.+
T Consensus         5 m~~~kI~viGaG~v-G~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d-~~a~~~aDiVIia   82 (324)
T 3gvi_A            5 MARNKIALIGSGMI-GGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGAND-YAAIEGADVVIVT   82 (324)
T ss_dssp             -CCCEEEEECCSHH-HHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESS-GGGGTTCSEEEEC
T ss_pred             CcCCEEEEECCCHH-HHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCC-HHHHCCCCEEEEc
Confidence            35678999999765 9999999999987 888885431                          22 3678999999999


Q ss_pred             cCCC
Q 024306          187 AGVA  190 (269)
Q Consensus       187 tg~p  190 (269)
                      +|.|
T Consensus        83 ag~p   86 (324)
T 3gvi_A           83 AGVP   86 (324)
T ss_dssp             CSCC
T ss_pred             cCcC
Confidence            9865

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.14  E-value=0.0057  Score=53.85  Aligned_cols=38  Identities=21%  Similarity=0.228  Sum_probs=32.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++++|.++|.|+++-+|++++..|+++|++|.++.|.
T Consensus        24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   61 (283)
T 3v8b_A           24 MNQPSPVALITGAGSGIGRATALALAADGVTVGALGRT   61 (283)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999998888999999999999999999775

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.14  E-value=0.0043  Score=53.99  Aligned_cols=53  Identities=13%  Similarity=0.137  Sum_probs=41.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------CHhhhcCC-CCEEEeccC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------NPEQITSE-ADIVIAAAG  188 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------~l~~~~~~-aDiVIsAtg  188 (269)
                      ++++|+|.|+ |.+|+.++..|.++|.+|+++.|...                 .+.+.++. +|+||...+
T Consensus         2 ~~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            2 SLSKILIAGC-GDLGLELARRLTAQGHEVTGLRRSAQPMPAGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHTTCCEEEEECTTSCCCTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCccccccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            4678999997 55699999999999999999987631                 12344555 999997775

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.13  E-value=0.0096  Score=50.36  Aligned_cols=53  Identities=21%  Similarity=0.212  Sum_probs=42.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC--------------Hhhhc----CCCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN--------------PEQIT----SEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~--------------l~~~~----~~aDiVIsAtg~  189 (269)
                      |+++|.|++|-+|+.++..|+++|++|+++.|....              +.+.+    ...|+||+..|.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~   72 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGVLDGLVCCAGV   72 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccccccCCcccHHHHHHHHHHcCCCccEEEECCCC
Confidence            579999998888999999999999999999876421              22333    378999988874

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.13  E-value=0.007  Score=53.54  Aligned_cols=38  Identities=13%  Similarity=0.152  Sum_probs=33.4

Q ss_pred             CCCccceEEEEcCCcc--cHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNI--VGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~--vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++.  +|+++++.|+++|++|.++.|.
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~   66 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQG   66 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECS
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCC
Confidence            3589999999999755  6999999999999999988765

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=96.13  E-value=0.0023  Score=58.05  Aligned_cols=53  Identities=26%  Similarity=0.308  Sum_probs=45.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeC-CC-CCHhhhcCCCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA-LT-KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~-~t-~~l~~~~~~aDiVIsAtg~  189 (269)
                      .+|+|.|++|.+|+.++..|.++|. +|+.+.+ .. .++.+.++++|+||...+.
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~~~d~Vih~a~~   56 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALLKADFIVHLAGV   56 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHCSEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhccCCEEEECCcC
Confidence            3799999999999999999999998 9999988 43 3466778899999988874

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.12  E-value=0.005  Score=53.87  Aligned_cols=38  Identities=26%  Similarity=0.204  Sum_probs=34.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||.++|.|+++-+|++++..|+++|++|.++.|.
T Consensus        24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   61 (270)
T 3ftp_A           24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATT   61 (270)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999998888999999999999999998765

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=96.11  E-value=0.0049  Score=59.22  Aligned_cols=74  Identities=22%  Similarity=0.156  Sum_probs=55.1

Q ss_pred             Ccc-ceEEEEcCCcccHHHHHHHHHhC------CCEEEEEeCCC-------------------CCHhhhcCCCCEEEecc
Q 024306          134 IMG-KNAVVIGRSNIVGLPTSLLLQRH------HATVSIVHALT-------------------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       134 l~g-k~v~ViG~gg~vg~~~a~~L~~~------ga~Vti~~~~t-------------------~~l~~~~~~aDiVIsAt  187 (269)
                      ++| |+|.|||.|.+ |.+++..|.+.      |.+|++..+..                   .++.+.+++||+||.++
T Consensus        51 L~GiKkIgIIGlGsM-G~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaV  129 (525)
T 3fr7_A           51 FKGIKQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLI  129 (525)
T ss_dssp             TTTCSEEEEECCTTH-HHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECS
T ss_pred             hcCCCEEEEEeEhHH-HHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECC
Confidence            688 99999999987 99999999998      88888775542                   13456788999999999


Q ss_pred             CC---CCccc--CCCcCCCcEEEEee
Q 024306          188 GV---ANLVR--GSWLKPGAVVLDVG  208 (269)
Q Consensus       188 g~---p~~i~--~~~~~~g~vViDv~  208 (269)
                      +-   +..+.  ...+++|++|+...
T Consensus       130 P~~~~~eVl~eI~p~LK~GaILs~Aa  155 (525)
T 3fr7_A          130 SDAAQADNYEKIFSHMKPNSILGLSH  155 (525)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEESS
T ss_pred             ChHHHHHHHHHHHHhcCCCCeEEEeC
Confidence            83   22232  12367888765543

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=96.11  E-value=0.0032  Score=60.12  Aligned_cols=72  Identities=17%  Similarity=0.268  Sum_probs=54.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhhc---CCCCEEEeccCCCCc--
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQIT---SEADIVIAAAGVANL--  192 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~~---~~aDiVIsAtg~p~~--  192 (269)
                      .+|.|||.|.+ |.+++..|++.|.+|++++|+.                   .++.+.+   +++|+||.+++.+..  
T Consensus         3 m~IgvIG~G~m-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~   81 (482)
T 2pgd_A            3 ADIALIGLAVM-GQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (482)
T ss_dssp             BSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             CeEEEEChHHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHH
Confidence            47999999886 9999999999999999998753                   1233443   489999999987521  


Q ss_pred             --cc--CCCcCCCcEEEEeee
Q 024306          193 --VR--GSWLKPGAVVLDVGT  209 (269)
Q Consensus       193 --i~--~~~~~~g~vViDv~~  209 (269)
                        +.  ...++++.+|||++.
T Consensus        82 ~vl~~l~~~l~~g~iII~~s~  102 (482)
T 2pgd_A           82 NFIEKLVPLLDIGDIIIDGGN  102 (482)
T ss_dssp             HHHHHHHHHCCTTCEEEECSC
T ss_pred             HHHHHHHhhcCCCCEEEECCC
Confidence              21  124678889999863

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.11  E-value=0.0042  Score=54.22  Aligned_cols=38  Identities=16%  Similarity=0.128  Sum_probs=32.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++.+|+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        12 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   49 (266)
T 3p19_A           12 RGSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARR   49 (266)
T ss_dssp             ---CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            45789999999998888999999999999999999775

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=96.11  E-value=0.0034  Score=54.51  Aligned_cols=52  Identities=13%  Similarity=0.183  Sum_probs=43.3

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC------HhhhcC--CCCEEEeccCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN------PEQITS--EADIVIAAAGV  189 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~------l~~~~~--~aDiVIsAtg~  189 (269)
                      +|+|.|++|.+|+.++..|.++|++|+++.|..-+      +.+.++  ..|+||+..+.
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~D~~d~~~~~~~~~~~~~d~vi~~a~~   66 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHCAAY   66 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTSCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEecccccCCCCHHHHHHHHHhcCCCEEEECCcc
Confidence            89999998889999999999999999999886433      344555  58999988874

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=96.10  E-value=0.0078  Score=51.74  Aligned_cols=39  Identities=10%  Similarity=-0.043  Sum_probs=33.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCC---CEEEEEeCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHH---ATVSIVHALT  170 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~g---a~Vti~~~~t  170 (269)
                      .++++|+++|.|+++-+|+.+++.|+++|   ++|+++.|..
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~   58 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNR   58 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCT
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecCh
Confidence            35789999999999999999999999999   8999987763

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.10  E-value=0.0042  Score=54.71  Aligned_cols=37  Identities=32%  Similarity=0.431  Sum_probs=33.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~   41 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARN   41 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            5789999999998888999999999999999988765

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.09  E-value=0.0053  Score=53.70  Aligned_cols=36  Identities=19%  Similarity=0.142  Sum_probs=32.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   37 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARR   37 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            478999999998888999999999999999998775

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.09  E-value=0.008  Score=53.95  Aligned_cols=75  Identities=20%  Similarity=0.290  Sum_probs=50.6

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------------CCHhhhcCCCCEE
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------KNPEQITSEADIV  183 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------------~~l~~~~~~aDiV  183 (269)
                      +++...++|+|||+|.. |.+++..|++.|.+|+++ ++.                           .+. +.+..+|+|
T Consensus        14 ~~~~~~~kI~IiGaGa~-G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v   90 (318)
T 3hwr_A           14 NLYFQGMKVAIMGAGAV-GCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDP-SAVQGADLV   90 (318)
T ss_dssp             ------CEEEEESCSHH-HHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCG-GGGTTCSEE
T ss_pred             hhhccCCcEEEECcCHH-HHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcCCCCEE
Confidence            34556789999999886 999999999999999998 442                           112 235789999


Q ss_pred             EeccCCCCc---cc--CCCcCCCcEEEEee
Q 024306          184 IAAAGVANL---VR--GSWLKPGAVVLDVG  208 (269)
Q Consensus       184 IsAtg~p~~---i~--~~~~~~g~vViDv~  208 (269)
                      |.+++....   +.  ...++++++|+.+.
T Consensus        91 ilavk~~~~~~~l~~l~~~l~~~~~iv~~~  120 (318)
T 3hwr_A           91 LFCVKSTDTQSAALAMKPALAKSALVLSLQ  120 (318)
T ss_dssp             EECCCGGGHHHHHHHHTTTSCTTCEEEEEC
T ss_pred             EEEcccccHHHHHHHHHHhcCCCCEEEEeC
Confidence            999986431   11  23456777777653

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=96.09  E-value=0.0095  Score=50.89  Aligned_cols=53  Identities=15%  Similarity=0.177  Sum_probs=42.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------CHhhhcC----CCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------NPEQITS----EADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------~l~~~~~----~aDiVIsAtg~  189 (269)
                      |+++|.|+++-+|+.+++.|+++|++|+++.|+..              ++.+.++    .-|++|+..|.
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~   72 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGL   72 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHHHHHHHHHHHHTTCTTCCSEEEECCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhccccccCCCCHHHHHHHHHHhCCCCCEEEECCCC
Confidence            57999999988999999999999999999987642              1223343    34999988884

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.08  E-value=0.0085  Score=53.81  Aligned_cols=54  Identities=20%  Similarity=0.322  Sum_probs=42.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHhhhcCCCCEEEeccC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAG  188 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~aDiVIsAtg  188 (269)
                      .++|.|||+|.+ |.+++..|+..|. +|+++++..                          .++ +.+++||+||.++|
T Consensus         4 ~~kI~VIGaG~~-G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg   81 (317)
T 2ewd_A            4 RRKIAVIGSGQI-GGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITAS   81 (317)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCC
T ss_pred             CCEEEEECCCHH-HHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence            468999999765 9999999999997 899886542                          123 46789999999998


Q ss_pred             CCC
Q 024306          189 VAN  191 (269)
Q Consensus       189 ~p~  191 (269)
                      .|.
T Consensus        82 ~p~   84 (317)
T 2ewd_A           82 IPG   84 (317)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            543

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.08  E-value=0.0051  Score=53.11  Aligned_cols=39  Identities=15%  Similarity=0.092  Sum_probs=34.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+.
T Consensus         3 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~   41 (252)
T 3h7a_A            3 LTPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNG   41 (252)
T ss_dssp             --CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            357899999999998889999999999999999998763

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.07  E-value=0.0071  Score=53.01  Aligned_cols=54  Identities=11%  Similarity=0.105  Sum_probs=43.5

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------------CHhhhcCCCCEEEec
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------------NPEQITSEADIVIAA  186 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------------~l~~~~~~aDiVIsA  186 (269)
                      .++|+|+|++|.+|+.++..|.++|.+|+++.|...                             ++.+.++.+|+||+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            478999999888899999999999999999877521                             133566778999988


Q ss_pred             cCC
Q 024306          187 AGV  189 (269)
Q Consensus       187 tg~  189 (269)
                      ++.
T Consensus        84 a~~   86 (313)
T 1qyd_A           84 LAG   86 (313)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            774

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=96.06  E-value=0.0088  Score=54.70  Aligned_cols=77  Identities=10%  Similarity=0.012  Sum_probs=53.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC------------------CCCHhhhc-----CCCCEEEeccCCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL------------------TKNPEQIT-----SEADIVIAAAGVA  190 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~------------------t~~l~~~~-----~~aDiVIsAtg~p  190 (269)
                      -.|++|+|+|++|.+|..+++++...|++|+...+.                  ..++.+.+     ..+|++|.++|.+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~~  242 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNV  242 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCSH
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCch
Confidence            579999999997777999999999999986655321                  12222222     2389999999975


Q ss_pred             Cccc--CCCc-CCCcEEEEeeec
Q 024306          191 NLVR--GSWL-KPGAVVLDVGTC  210 (269)
Q Consensus       191 ~~i~--~~~~-~~g~vViDv~~~  210 (269)
                      ..+.  -+.+ +++-.++.++..
T Consensus       243 ~~~~~~~~~l~~~~G~iv~~g~~  265 (371)
T 3gqv_A          243 ESTTFCFAAIGRAGGHYVSLNPF  265 (371)
T ss_dssp             HHHHHHHHHSCTTCEEEEESSCC
T ss_pred             HHHHHHHHHhhcCCCEEEEEecC
Confidence            4332  2346 577777788753

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.05  E-value=0.0086  Score=52.99  Aligned_cols=38  Identities=21%  Similarity=0.252  Sum_probs=32.9

Q ss_pred             CCCccceEEEEcCCc--ccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSN--IVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg--~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++  -+|+++++.|+++|++|.++.+.
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~   65 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLS   65 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCC
Confidence            457899999999973  35999999999999999998765

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=96.04  E-value=0.0029  Score=57.54  Aligned_cols=87  Identities=25%  Similarity=0.236  Sum_probs=56.5

Q ss_pred             HHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHh----hhc--
Q 024306          123 CIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE----QIT--  177 (269)
Q Consensus       123 ~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~----~~~--  177 (269)
                      ++..+.+..---.|++|+|.|++|.+|..+++.+..+|++|+.+.++.                   .+..    +..  
T Consensus       158 a~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~  237 (351)
T 1yb5_A          158 AYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGE  237 (351)
T ss_dssp             HHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCT
T ss_pred             HHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCC
Confidence            344454322223689999999955579999999999999988876541                   1111    112  


Q ss_pred             CCCCEEEeccCCCCc-ccCCCcCCCcEEEEeee
Q 024306          178 SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  209 (269)
Q Consensus       178 ~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~  209 (269)
                      +..|+||+++|.+.+ -.-+.++++-.++.++.
T Consensus       238 ~~~D~vi~~~G~~~~~~~~~~l~~~G~iv~~g~  270 (351)
T 1yb5_A          238 KGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGS  270 (351)
T ss_dssp             TCEEEEEESCHHHHHHHHHHHEEEEEEEEECCC
T ss_pred             CCcEEEEECCChHHHHHHHHhccCCCEEEEEec
Confidence            258999999886432 12234667666777774

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.04  E-value=0.011  Score=52.44  Aligned_cols=35  Identities=26%  Similarity=0.304  Sum_probs=31.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++|+|.|++|.+|+.++..|+++|++|+++.|.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~   38 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNL   38 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecC
Confidence            46899999998889999999999999999998764

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.04  E-value=0.0064  Score=50.21  Aligned_cols=55  Identities=11%  Similarity=0.045  Sum_probs=41.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCCC-----------CHh--hhcCC--CCEEEeccCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALTK-----------NPE--QITSE--ADIVIAAAGV  189 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t~-----------~l~--~~~~~--aDiVIsAtg~  189 (269)
                      .+++|+|.|++|.+|+.++..|.++|+  +|+++.|...           ++.  +.+.+  .|+||+++|.
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~~~~~~~~~~~D~~~~~~~~~~~~d~vi~~a~~   75 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGT   75 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcccCCCceEEeccccCHHHHHHhhhcEEEECeee
Confidence            468999999988899999999999998  8998876532           111  11222  7999988774

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.03  E-value=0.0051  Score=51.95  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=32.0

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+|+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~   38 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARD   38 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            47889999999999999999999999999998775

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=96.02  E-value=0.0078  Score=53.53  Aligned_cols=58  Identities=16%  Similarity=0.381  Sum_probs=45.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCC-------CEEEEEeCCCC---------------------CHhhhc-CCCCE
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHH-------ATVSIVHALTK---------------------NPEQIT-SEADI  182 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~g-------a~Vti~~~~t~---------------------~l~~~~-~~aDi  182 (269)
                      ..+++++|+|.|++|.+|+.++..|.++|       ++|+++.|...                     .+.+.+ ...|+
T Consensus        10 ~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~   89 (342)
T 2hrz_A           10 LYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSAPGEAEKLVEARPDV   89 (342)
T ss_dssp             SCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCTTCCSEEEEEECCTTSTTHHHHHHHTCCSE
T ss_pred             CCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCccccccCCceeEEEcCCCCHHHHHHHHhcCCCE
Confidence            45789999999998889999999999999       78988876421                     123345 47899


Q ss_pred             EEeccCC
Q 024306          183 VIAAAGV  189 (269)
Q Consensus       183 VIsAtg~  189 (269)
                      ||...+.
T Consensus        90 vih~A~~   96 (342)
T 2hrz_A           90 IFHLAAI   96 (342)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9988774

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=96.02  E-value=0.0051  Score=53.08  Aligned_cols=53  Identities=11%  Similarity=0.165  Sum_probs=44.2

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCC----CEEEEEeCCC--------CCHhhhcCCCCEEEeccCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHH----ATVSIVHALT--------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~g----a~Vti~~~~t--------~~l~~~~~~aDiVIsAtg~  189 (269)
                      ..+|.|||.|.+ |.+++..|.+.|    .+|++++++.        .+..+.++++|+||.+++.
T Consensus         4 ~m~i~iiG~G~m-G~~~a~~l~~~g~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~   68 (262)
T 2rcy_A            4 NIKLGFMGLGQM-GSALAHGIANANIIKKENLFYYGPSKKNTTLNYMSSNEELARHCDIIVCAVKP   68 (262)
T ss_dssp             SSCEEEECCSHH-HHHHHHHHHHHTSSCGGGEEEECSSCCSSSSEECSCHHHHHHHCSEEEECSCT
T ss_pred             CCEEEEECcCHH-HHHHHHHHHHCCCCCCCeEEEEeCCcccCceEEeCCHHHHHhcCCEEEEEeCH
Confidence            457999999886 999999999888    5799998764        2566778899999999983

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.02  E-value=0.0054  Score=53.77  Aligned_cols=37  Identities=22%  Similarity=0.162  Sum_probs=31.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++|.++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   61 (272)
T 4dyv_A           25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRR   61 (272)
T ss_dssp             ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4689999999998888999999999999999998775

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=96.01  E-value=0.0048  Score=54.25  Aligned_cols=38  Identities=24%  Similarity=0.216  Sum_probs=34.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus        12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~   49 (291)
T 3rd5_A           12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRD   49 (291)
T ss_dssp             CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECC
Confidence            46899999999998888999999999999999999775

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=96.01  E-value=0.0028  Score=57.30  Aligned_cols=91  Identities=16%  Similarity=0.172  Sum_probs=60.9

Q ss_pred             cCCHHHHHHHHHHh-----CCCCccceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCCC--------------CH--
Q 024306          117 PCTPKGCIELLIRS-----GVEIMGKNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALTK--------------NP--  173 (269)
Q Consensus       117 p~t~~g~~~~l~~~-----~~~l~gk~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~t~--------------~l--  173 (269)
                      ||....++..++..     ++  .|++|+|+|+|+ +|..+++++...  |++|+.+.++..              +.  
T Consensus       149 ~~~~~ta~~al~~~~~~~~~~--~g~~VlV~GaG~-vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~  225 (344)
T 2h6e_A          149 ADAGTTSMGAIRQALPFISKF--AEPVVIVNGIGG-LAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKD  225 (344)
T ss_dssp             GTHHHHHHHHHHHHHHHHTTC--SSCEEEEECCSH-HHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHH
T ss_pred             hhhhHHHHHHHHhhhhcccCC--CCCEEEEECCCH-HHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEecccc
Confidence            44444445666655     55  899999999965 699999999988  999888865421              11  


Q ss_pred             -----hhhc--CCCCEEEeccCCCCcc--cCCCcCCCcEEEEeeec
Q 024306          174 -----EQIT--SEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       174 -----~~~~--~~aDiVIsAtg~p~~i--~~~~~~~g~vViDv~~~  210 (269)
                           .+..  +.+|+||+++|.+..+  .-+.++++-.++.++..
T Consensus       226 ~~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~  271 (344)
T 2h6e_A          226 AESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGME  271 (344)
T ss_dssp             HHHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             chHHHHHhhcCCCccEEEECCCChHHHHHHHHHhhcCCEEEEeCCC
Confidence                 0111  1589999999976332  22456777677777754

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.01  E-value=0.013  Score=49.86  Aligned_cols=34  Identities=24%  Similarity=0.209  Sum_probs=31.5

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +|+++|.|+++-+|+.+++.|+++|++|.++.|+
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~   35 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRN   35 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            6899999999889999999999999999998775

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.01  E-value=0.0085  Score=52.29  Aligned_cols=39  Identities=28%  Similarity=0.396  Sum_probs=35.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .+++||+++|.|+++-+|+++++.|+++|++|.++.|+.
T Consensus         2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   40 (274)
T 3e03_A            2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSA   40 (274)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccc
Confidence            468999999999998889999999999999999998764

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.01  E-value=0.011  Score=51.61  Aligned_cols=53  Identities=19%  Similarity=0.122  Sum_probs=42.7

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCCC-----------------------HhhhcCCCCEEEeccC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTKN-----------------------PEQITSEADIVIAAAG  188 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~~-----------------------l~~~~~~aDiVIsAtg  188 (269)
                      .++|+|.|++|.+|+.++..|.++| ++|+++.|....                       +.+.++.+|+||+.++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            5789999998889999999999998 899998776321                       2345677888887766

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.00  E-value=0.0069  Score=53.12  Aligned_cols=38  Identities=24%  Similarity=0.360  Sum_probs=34.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   65 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARH   65 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999998888999999999999999999775

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.00  E-value=0.0043  Score=53.54  Aligned_cols=37  Identities=19%  Similarity=0.305  Sum_probs=33.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   38 (254)
T 1hdc_A            2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVL   38 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999998888999999999999999998775

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=95.99  E-value=0.0083  Score=54.59  Aligned_cols=58  Identities=16%  Similarity=0.298  Sum_probs=44.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-----------------------CCHhhhcCCCCEEEec
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-----------------------KNPEQITSEADIVIAA  186 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-----------------------~~l~~~~~~aDiVIsA  186 (269)
                      .+-.+++|.|||+|.+ |.+++..|+..+.  ++.+++...                       .+..+.+++||+||.+
T Consensus         5 ~~~~~~kV~ViGaG~v-G~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~   83 (326)
T 3vku_A            5 TDKDHQKVILVGDGAV-GSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVIT   83 (326)
T ss_dssp             --CCCCEEEEECCSHH-HHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEEC
T ss_pred             ccCCCCEEEEECCCHH-HHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEEC
Confidence            3457789999999775 9999999998885  788886531                       1224678999999999


Q ss_pred             cCCC
Q 024306          187 AGVA  190 (269)
Q Consensus       187 tg~p  190 (269)
                      .|.|
T Consensus        84 ag~~   87 (326)
T 3vku_A           84 AGAP   87 (326)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9864

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=95.99  E-value=0.0098  Score=52.86  Aligned_cols=36  Identities=19%  Similarity=0.102  Sum_probs=29.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++|+|+|.|++|.+|+.++..|+++|++|+++.|.
T Consensus         3 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~   38 (337)
T 2c29_D            3 SQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRD   38 (337)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECC
Confidence            368999999999989999999999999999876554

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=95.98  E-value=0.012  Score=53.29  Aligned_cols=94  Identities=11%  Similarity=0.065  Sum_probs=58.3

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC-----------------------
Q 024306          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-----------------------  172 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~-----------------------  172 (269)
                      +|+.+..++..+.+..---.|.+|+|+|++|.+|..+++++...|++|.++.+..++                       
T Consensus       148 l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~  227 (357)
T 1zsy_A          148 LGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELR  227 (357)
T ss_dssp             TTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHH
T ss_pred             hcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcch
Confidence            344444445555554333479999999996667999999999999986554322111                       


Q ss_pred             ---HhhhcC---CCCEEEeccCCCCcc-cCCCcCCCcEEEEeee
Q 024306          173 ---PEQITS---EADIVIAAAGVANLV-RGSWLKPGAVVLDVGT  209 (269)
Q Consensus       173 ---l~~~~~---~aDiVIsAtg~p~~i-~~~~~~~g~vViDv~~  209 (269)
                         +.+.+.   .+|+||.++|.+... .-+.++++-.++.+|.
T Consensus       228 ~~~~~~~~~~~~~~Dvvid~~g~~~~~~~~~~l~~~G~iv~~G~  271 (357)
T 1zsy_A          228 RPEMKNFFKDMPQPRLALNCVGGKSSTELLRQLARGGTMVTYGG  271 (357)
T ss_dssp             SGGGGGTTSSSCCCSEEEESSCHHHHHHHHTTSCTTCEEEECCC
T ss_pred             HHHHHHHHhCCCCceEEEECCCcHHHHHHHHhhCCCCEEEEEec
Confidence               111122   378888888854331 2345677767777764

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.98  E-value=0.0044  Score=55.41  Aligned_cols=76  Identities=13%  Similarity=0.113  Sum_probs=53.3

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHh----hhc--CCCCEEEeccC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE----QIT--SEADIVIAAAG  188 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~----~~~--~~aDiVIsAtg  188 (269)
                      -.|++|+|.|+++.+|..+++.+...|++|+++.++.                   .+..    +.+  ...|++|+++|
T Consensus       139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g  218 (327)
T 1qor_A          139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG  218 (327)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCc
Confidence            3699999999755569999999999999988886541                   1111    112  24799999998


Q ss_pred             CCCcc--cCCCcCCCcEEEEeeec
Q 024306          189 VANLV--RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       189 ~p~~i--~~~~~~~g~vViDv~~~  210 (269)
                       +..+  .-+.++++-.++.++..
T Consensus       219 -~~~~~~~~~~l~~~G~iv~~g~~  241 (327)
T 1qor_A          219 -RDTWERSLDCLQRRGLMVSFGNS  241 (327)
T ss_dssp             -GGGHHHHHHTEEEEEEEEECCCT
T ss_pred             -hHHHHHHHHHhcCCCEEEEEecC
Confidence             3322  23456777777788754

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.97  E-value=0.0037  Score=56.55  Aligned_cols=84  Identities=14%  Similarity=0.247  Sum_probs=57.6

Q ss_pred             HHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHhhhc------
Q 024306          124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPEQIT------  177 (269)
Q Consensus       124 ~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l~~~~------  177 (269)
                      +..++..++  .|++|+|+|+|+ +|..+++++..+|+ +|+.+.++.                   .++.+.+      
T Consensus       158 ~~~l~~~~~--~g~~VlV~GaG~-vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g  234 (348)
T 2d8a_A          158 VDTVLAGPI--SGKSVLITGAGP-LGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDG  234 (348)
T ss_dssp             HHHHTTSCC--TTCCEEEECCSH-HHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTT
T ss_pred             HHHHHhcCC--CCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCC
Confidence            334433334  899999999955 59999999999999 888876541                   1222222      


Q ss_pred             CCCCEEEeccCCCCccc--CCCcCCCcEEEEeeec
Q 024306          178 SEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       178 ~~aDiVIsAtg~p~~i~--~~~~~~g~vViDv~~~  210 (269)
                      +.+|+||+++|.+..+.  -+.++++-.++.++..
T Consensus       235 ~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~  269 (348)
T 2d8a_A          235 NGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLY  269 (348)
T ss_dssp             SCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccC
Confidence            25899999999744322  2356777778888864

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=95.96  E-value=0.0045  Score=56.24  Aligned_cols=77  Identities=12%  Similarity=0.072  Sum_probs=53.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHh----hhc--CCCCEEEeccC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE----QIT--SEADIVIAAAG  188 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~----~~~--~~aDiVIsAtg  188 (269)
                      -.|++|+|.|++|.+|..+++.+...|++|+++.++.                   .+..    +..  ...|++|+++|
T Consensus       161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G  240 (354)
T 2j8z_A          161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIG  240 (354)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSC
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCC
Confidence            3689999999755579999999999999988876542                   1111    122  25799999998


Q ss_pred             CCCc-ccCCCcCCCcEEEEeeec
Q 024306          189 VANL-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       189 ~p~~-i~~~~~~~g~vViDv~~~  210 (269)
                      .+.+ -.-+.++++-.++.++..
T Consensus       241 ~~~~~~~~~~l~~~G~iv~~G~~  263 (354)
T 2j8z_A          241 GSYWEKNVNCLALDGRWVLYGLM  263 (354)
T ss_dssp             GGGHHHHHHHEEEEEEEEECCCT
T ss_pred             chHHHHHHHhccCCCEEEEEecc
Confidence            7532 122356777777778754

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=95.94  E-value=0.0094  Score=53.41  Aligned_cols=36  Identities=33%  Similarity=0.224  Sum_probs=32.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++++|+|.|++|.+|+.++..|.++|++|+++.|.
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   42 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLT   42 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCC
Confidence            468999999999999999999999999999998765

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=95.93  E-value=0.0077  Score=52.79  Aligned_cols=36  Identities=22%  Similarity=0.102  Sum_probs=30.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++||+++|.|+++-+|+++++.|+++|++|.++.|.
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   57 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARD   57 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            578999999998888999999999999999998775

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=95.93  E-value=0.0089  Score=50.56  Aligned_cols=38  Identities=26%  Similarity=0.266  Sum_probs=34.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+.+++.|+++|++|+++.|.
T Consensus         3 ~~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~   40 (244)
T 1cyd_A            3 LNFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT   40 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999998889999999999999999998765

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=95.93  E-value=0.011  Score=52.57  Aligned_cols=88  Identities=11%  Similarity=0.039  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhh--------------h-cCCCCEEE
Q 024306          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQ--------------I-TSEADIVI  184 (269)
Q Consensus       120 ~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~--------------~-~~~aDiVI  184 (269)
                      ..-++..+ +..---.|.+|+|+|+ |.+|..+++++...|++|+.+. +...++.              . -+.+|+||
T Consensus       128 ~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v~~g~Dvv~  204 (315)
T 3goh_A          128 LLTAWQAF-EKIPLTKQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQVTQKYFAIF  204 (315)
T ss_dssp             HHHHHHHH-TTSCCCSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGCCSCEEEEE
T ss_pred             HHHHHHHH-hhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHhCCCccEEE
Confidence            33345555 2323347999999999 4569999999999999988776 3322211              0 14589999


Q ss_pred             eccCCCCc-ccCCCcCCCcEEEEeeec
Q 024306          185 AAAGVANL-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       185 sAtg~p~~-i~~~~~~~g~vViDv~~~  210 (269)
                      .++|.+.. -.-+.++++-.++.++..
T Consensus       205 d~~g~~~~~~~~~~l~~~G~~v~~g~~  231 (315)
T 3goh_A          205 DAVNSQNAAALVPSLKANGHIICIQDR  231 (315)
T ss_dssp             CC-------TTGGGEEEEEEEEEECCC
T ss_pred             ECCCchhHHHHHHHhcCCCEEEEEeCC
Confidence            99997654 223457777777777643

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=95.93  E-value=0.015  Score=51.91  Aligned_cols=36  Identities=19%  Similarity=0.213  Sum_probs=31.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++++|+|.|++|.+|+.++..|.++|++|+++.|.
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   60 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   60 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            578999999999989999999999999999998764

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=95.92  E-value=0.0077  Score=52.77  Aligned_cols=39  Identities=23%  Similarity=0.220  Sum_probs=35.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+.
T Consensus        29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~   67 (275)
T 4imr_A           29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKP   67 (275)
T ss_dssp             HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            468999999999988889999999999999999997763

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=95.92  E-value=0.011  Score=51.55  Aligned_cols=39  Identities=13%  Similarity=0.139  Sum_probs=33.4

Q ss_pred             CCCccceEEEEcCCcc--cHHHHHHHHHhCCCEEEEEeCCC
Q 024306          132 VEIMGKNAVVIGRSNI--VGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~--vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      -+++||+++|.|+++.  +|+++++.|+++|++|.++.+..
T Consensus        22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             cccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            3578999999997644  69999999999999999987753

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=95.91  E-value=0.0033  Score=56.09  Aligned_cols=86  Identities=22%  Similarity=0.185  Sum_probs=53.4

Q ss_pred             HHHHHHhCCCCc-cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhh--c-------------------CCCC
Q 024306          124 IELLIRSGVEIM-GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQI--T-------------------SEAD  181 (269)
Q Consensus       124 ~~~l~~~~~~l~-gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~--~-------------------~~aD  181 (269)
                      +..+++.++... |+ |+|+|++|.+|..+++++...|++|+.+.++...++..  +                   ...|
T Consensus       135 l~~~~~~~~~~~~g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d  213 (324)
T 3nx4_A          135 VMALEDAGIRPQDGE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWA  213 (324)
T ss_dssp             HHHHHHTTCCGGGCC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEE
T ss_pred             HHHhhhcccCCCCCe-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCcc
Confidence            344444444433 45 99999966679999999999999988876543221100  0                   2357


Q ss_pred             EEEeccCCCCc-ccCCCcCCCcEEEEeeec
Q 024306          182 IVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       182 iVIsAtg~p~~-i~~~~~~~g~vViDv~~~  210 (269)
                      ++|.++|.+.+ -.-+.++++-.++.++..
T Consensus       214 ~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~  243 (324)
T 3nx4_A          214 GAIDTVGDKVLAKVLAQMNYGGCVAACGLA  243 (324)
T ss_dssp             EEEESSCHHHHHHHHHTEEEEEEEEECCCT
T ss_pred             EEEECCCcHHHHHHHHHHhcCCEEEEEecC
Confidence            77777775422 122356676677777754

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=95.90  E-value=0.011  Score=51.92  Aligned_cols=57  Identities=16%  Similarity=0.156  Sum_probs=42.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------C------HhhhcCC--CCEEEeccCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------N------PEQITSE--ADIVIAAAGV  189 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------~------l~~~~~~--aDiVIsAtg~  189 (269)
                      ..+-++|+|.|++|.+|+.++..|.++|++|+++.|...           +      +.+.++.  .|+||...+.
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   84 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAK   84 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSC
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccccceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCcc
Confidence            346788999999999999999999999999999877531           1      2334444  7999988774

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.90  E-value=0.012  Score=53.64  Aligned_cols=77  Identities=18%  Similarity=0.169  Sum_probs=53.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC---------------------CCHhhhcC-----CCCEEEec
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT---------------------KNPEQITS-----EADIVIAA  186 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t---------------------~~l~~~~~-----~aDiVIsA  186 (269)
                      -.|++|+|+|+|+ ||..+++++...|+ +|+.+.+..                     .++.+.++     .+|+||.+
T Consensus       190 ~~g~~VlV~GaG~-vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~  268 (373)
T 1p0f_A          190 TPGSTCAVFGLGG-VGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC  268 (373)
T ss_dssp             CTTCEEEEECCSH-HHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEEC
Confidence            3689999999866 59999999999999 788775431                     11222221     58999999


Q ss_pred             cCCCCcc--cCCCcCCC-cEEEEeeecC
Q 024306          187 AGVANLV--RGSWLKPG-AVVLDVGTCP  211 (269)
Q Consensus       187 tg~p~~i--~~~~~~~g-~vViDv~~~~  211 (269)
                      +|.+..+  .-+.++++ -.++.++...
T Consensus       269 ~g~~~~~~~~~~~l~~~~G~iv~~G~~~  296 (373)
T 1p0f_A          269 AGRIETMMNALQSTYCGSGVTVVLGLAS  296 (373)
T ss_dssp             SCCHHHHHHHHHTBCTTTCEEEECCCCC
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEccCC
Confidence            9975432  23467777 7777887543

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=95.89  E-value=0.0071  Score=56.34  Aligned_cols=70  Identities=27%  Similarity=0.375  Sum_probs=51.6

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------------------CCHhhhcCCCCEEEe
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------KNPEQITSEADIVIA  185 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------------------~~l~~~~~~aDiVIs  185 (269)
                      +|.|||.|.+ |.+++..|++ |.+|++++++.                                .+..+.+++||+||.
T Consensus         2 kI~VIG~G~v-G~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            2 KIAVAGSGYV-GLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             EEEEECCSHH-HHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             EEEEECCCHH-HHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            6899999886 9999999998 99999997642                                122345667999999


Q ss_pred             ccCCCC-----------c------ccCCCcCCCcEEEEeeecC
Q 024306          186 AAGVAN-----------L------VRGSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       186 Atg~p~-----------~------i~~~~~~~g~vViDv~~~~  211 (269)
                      +++.|.           .      +.+  ++++++|++...++
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~~~i~~--l~~~~iVV~~ST~~  120 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVIKEVLS--VNSHATLIIKSTIP  120 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHH--HCSSCEEEECSCCC
T ss_pred             ecCCCcccCCCCccHHHHHHHHHHHHh--hCCCCEEEEeCCCC
Confidence            998761           1      111  57888888844443

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=95.89  E-value=0.0048  Score=55.83  Aligned_cols=92  Identities=12%  Similarity=-0.040  Sum_probs=58.9

Q ss_pred             cCCHHHHHHHHHHhCCCCcc-ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHhhh
Q 024306          117 PCTPKGCIELLIRSGVEIMG-KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPEQI  176 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~g-k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~~~  176 (269)
                      |+.+..+..+++..+  ..| +.++|.|++|.+|..+++++...|++|+.+.++.                   .++.+.
T Consensus       147 ~~~~~ta~~~~~~~~--~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~  224 (349)
T 3pi7_A          147 IVNPLTAIAMFDIVK--QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEAT  224 (349)
T ss_dssp             SHHHHHHHHHHHHHH--HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHH
T ss_pred             cccHHHHHHHHHHHh--hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHH
Confidence            333333444444443  345 6777776656679999999999999988876542                   122222


Q ss_pred             c------CCCCEEEeccCCCCc-ccCCCcCCCcEEEEeeec
Q 024306          177 T------SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       177 ~------~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~~  210 (269)
                      +      +..|+||+++|.+.. -.-+.++++-.++.+|..
T Consensus       225 v~~~~~~~g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~  265 (349)
T 3pi7_A          225 LREVMKAEQPRIFLDAVTGPLASAIFNAMPKRARWIIYGRL  265 (349)
T ss_dssp             HHHHHHHHCCCEEEESSCHHHHHHHHHHSCTTCEEEECCCS
T ss_pred             HHHHhcCCCCcEEEECCCChhHHHHHhhhcCCCEEEEEecc
Confidence            2      358999999996543 122357787788888854

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=95.89  E-value=0.065  Score=48.78  Aligned_cols=141  Identities=11%  Similarity=0.025  Sum_probs=94.8

Q ss_pred             HHHHHHHHcCCeEEEEEcCCCC---CHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceec
Q 024306           28 NKIKACEEVGIKSIVTEFADGC---TEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIG  104 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~~~---~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g  104 (269)
                      +-..++.++|.++.+..|..+.   .-|-+.+.++-|+.-  +|+|.+--|-..  ....+.++.       .+-.+|.|
T Consensus        61 SFE~A~~~LGg~~i~~~l~~~ss~~kgEsl~DTarvls~~--~D~iviR~~~~~--~~~~lA~~~-------~vPVINag  129 (328)
T 3grf_A           61 SLETAMTRLGGHAIYYELGANSNVGGKETVQDTAEVFSRM--VDICTARLATKE--MMREMAQHA-------SVPCINAL  129 (328)
T ss_dssp             HHHHHHHHHTCEEEEEEC----------CHHHHHHHHTTT--CSEEEEECSSHH--HHHHHHHHC-------SSCEEESS
T ss_pred             HHHHHHHHCCCeEEccccCccccCCCCCCHHHHHHHHHhh--CCEEEEecCChh--HHHHHHHhC-------CCCEEeCC
Confidence            4567899999999985554321   134578888888873  899999877321  112222221       12344542


Q ss_pred             ccccCCCCCccccCCHHH-HHHHHHHhC------CCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCCC------
Q 024306          105 NLAMRGREPLFIPCTPKG-CIELLIRSG------VEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHALT------  170 (269)
Q Consensus       105 ~l~~g~~~~~~~p~t~~g-~~~~l~~~~------~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~t------  170 (269)
                             ++.+.||=+.+ ++.+.++.+      ..++|.+|+++|-+ ..|++.++..+...|++|+++....      
T Consensus       130 -------~~~~HPtQaLaDl~Ti~e~~g~~~~~~~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~  202 (328)
T 3grf_A          130 -------DDFGHPLQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPI  202 (328)
T ss_dssp             -------CSSCCHHHHHHHHHHHHHHHHHTTCCTTTGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCC
T ss_pred             -------CCCCCcHHHHHHHHHHHHHhCCccccccccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCC
Confidence                   22466887777 556666665      27999999999987 6679999999999999999985431      


Q ss_pred             -----------------------CCHhhhcCCCCEEEec
Q 024306          171 -----------------------KNPEQITSEADIVIAA  186 (269)
Q Consensus       171 -----------------------~~l~~~~~~aDiVIsA  186 (269)
                                             .++.+.+++||+|.+.
T Consensus       203 ~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvytd  241 (328)
T 3grf_A          203 KEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDVVYTD  241 (328)
T ss_dssp             HHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCEEEec
Confidence                                   2455678999999974

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.88  E-value=0.0097  Score=54.63  Aligned_cols=72  Identities=8%  Similarity=0.073  Sum_probs=55.3

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHhhhcCCCCEEEecc
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------~~l~~~~~~aDiVIsAt  187 (269)
                      ..+|.|||+|.. |.+++..|++.|.+|++..|..                            .++.+.+++||+||.++
T Consensus        29 ~mkI~VIGaG~m-G~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaV  107 (356)
T 3k96_A           29 KHPIAILGAGSW-GTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVV  107 (356)
T ss_dssp             CSCEEEECCSHH-HHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECC
T ss_pred             CCeEEEECccHH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECC
Confidence            468999999886 9999999999999999997641                            24556788999999999


Q ss_pred             CCCC---ccc--CCCcCCCcEEEEee
Q 024306          188 GVAN---LVR--GSWLKPGAVVLDVG  208 (269)
Q Consensus       188 g~p~---~i~--~~~~~~g~vViDv~  208 (269)
                      +...   .+.  ...++++++|+++.
T Consensus       108 p~~~~~~vl~~i~~~l~~~~ivvs~~  133 (356)
T 3k96_A          108 PSFAFHEVITRMKPLIDAKTRIAWGT  133 (356)
T ss_dssp             CHHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            8532   111  23467888888874

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=95.88  E-value=0.0078  Score=51.51  Aligned_cols=37  Identities=19%  Similarity=0.287  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++|+++|.|+++-+|+.+++.|+++|++|+++.|.
T Consensus        11 ~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~   47 (265)
T 1h5q_A           11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRS   47 (265)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESS
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCc
Confidence            4789999999999989999999999999999999874

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.87  E-value=0.013  Score=53.51  Aligned_cols=76  Identities=21%  Similarity=0.196  Sum_probs=53.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC---------------------CHhhhcC-----CCCEEEec
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---------------------NPEQITS-----EADIVIAA  186 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~---------------------~l~~~~~-----~aDiVIsA  186 (269)
                      -.|++|+|+|+|+ +|..+++++..+|+ +|+.+.++..                     ++.+.++     .+|+||++
T Consensus       191 ~~g~~VlV~GaG~-vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~  269 (374)
T 1cdo_A          191 EPGSTCAVFGLGA-VGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLEC  269 (374)
T ss_dssp             CTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEEC
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEEC
Confidence            4689999999866 59999999999999 7887754321                     1222221     48999999


Q ss_pred             cCCCCcc--cCCCcCCC-cEEEEeeec
Q 024306          187 AGVANLV--RGSWLKPG-AVVLDVGTC  210 (269)
Q Consensus       187 tg~p~~i--~~~~~~~g-~vViDv~~~  210 (269)
                      +|.+..+  .-+.++++ -.++.++..
T Consensus       270 ~g~~~~~~~~~~~l~~~~G~iv~~G~~  296 (374)
T 1cdo_A          270 VGNVGVMRNALESCLKGWGVSVLVGWT  296 (374)
T ss_dssp             SCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             CCCHHHHHHHHHHhhcCCcEEEEEcCC
Confidence            9875432  23467777 777777754

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.86  E-value=0.011  Score=53.86  Aligned_cols=77  Identities=19%  Similarity=0.207  Sum_probs=53.8

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC---------------------CHhhhc-----CCCCEEEec
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---------------------NPEQIT-----SEADIVIAA  186 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~---------------------~l~~~~-----~~aDiVIsA  186 (269)
                      -.|++|+|+|+|+ +|..+++++..+|+ +|+.+.+...                     ++.+.+     ..+|+||++
T Consensus       190 ~~g~~VlV~GaG~-vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~  268 (374)
T 2jhf_A          190 TQGSTCAVFGLGG-VGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV  268 (374)
T ss_dssp             CTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEEC
Confidence            4789999999866 59999999999999 7887754321                     122222     147999999


Q ss_pred             cCCCCcc--cCCCcCCC-cEEEEeeecC
Q 024306          187 AGVANLV--RGSWLKPG-AVVLDVGTCP  211 (269)
Q Consensus       187 tg~p~~i--~~~~~~~g-~vViDv~~~~  211 (269)
                      +|.+..+  .-+.++++ -.++.++...
T Consensus       269 ~g~~~~~~~~~~~l~~~~G~iv~~G~~~  296 (374)
T 2jhf_A          269 IGRLDTMVTALSCCQEAYGVSVIVGVPP  296 (374)
T ss_dssp             SCCHHHHHHHHHHBCTTTCEEEECSCCC
T ss_pred             CCCHHHHHHHHHHhhcCCcEEEEeccCC
Confidence            9875433  23457777 7777787543

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=95.86  E-value=0.0073  Score=52.86  Aligned_cols=40  Identities=20%  Similarity=0.220  Sum_probs=36.1

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .++|+||.++|-|++.-+|++++..|+++||+|.++.++.
T Consensus         4 ~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~   43 (247)
T 4hp8_A            4 PFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRA   43 (247)
T ss_dssp             TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            3689999999999988889999999999999999998763

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=95.84  E-value=0.006  Score=54.16  Aligned_cols=39  Identities=15%  Similarity=0.299  Sum_probs=35.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .+++||+++|.|+++-+|+++++.|+++|++|.++.|..
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~   75 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSP   75 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            568999999999988889999999999999999997763

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=95.84  E-value=0.0097  Score=50.66  Aligned_cols=38  Identities=18%  Similarity=0.237  Sum_probs=34.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         7 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~   44 (254)
T 2wsb_A            7 FRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDRE   44 (254)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999999999999999999999998775

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=95.82  E-value=0.0079  Score=51.34  Aligned_cols=36  Identities=25%  Similarity=0.197  Sum_probs=29.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|++++..|++ |+.|.++.|.
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~   37 (245)
T 3e9n_A            2 SLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRN   37 (245)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESC
T ss_pred             CCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCC
Confidence            46799999999988889999999987 8899988775

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=95.82  E-value=0.01  Score=50.32  Aligned_cols=37  Identities=24%  Similarity=0.252  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+.+++.|+++|++|.++.|.
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~   40 (244)
T 3d3w_A            4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT   40 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999998888999999999999999998775

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=95.82  E-value=0.0083  Score=55.50  Aligned_cols=38  Identities=13%  Similarity=0.023  Sum_probs=33.3

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK  171 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~  171 (269)
                      ..+++|+|.|++|.+|+.++..|.++|++|+++.|...
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~  104 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADN  104 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSS
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCC
Confidence            46789999999999999999999999999998877643

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.82  E-value=0.0076  Score=54.38  Aligned_cols=75  Identities=17%  Similarity=0.143  Sum_probs=52.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHh----hhc--CCCCEEEeccCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE----QIT--SEADIVIAAAGV  189 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~----~~~--~~aDiVIsAtg~  189 (269)
                      .|++|+|+|++|.+|..+++++..+|++|+.+.++.                   .++.    +..  ...|+||+++| 
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g-  244 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTG-  244 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSC-
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-
Confidence            689999999966679999999999999988876541                   1211    222  25799999999 


Q ss_pred             CCcc--cCCCcCCCcEEEEeeec
Q 024306          190 ANLV--RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       190 p~~i--~~~~~~~g~vViDv~~~  210 (269)
                      +..+  .-+.++++-.++.++..
T Consensus       245 ~~~~~~~~~~l~~~G~~v~~g~~  267 (343)
T 2eih_A          245 ALYFEGVIKATANGGRIAIAGAS  267 (343)
T ss_dssp             SSSHHHHHHHEEEEEEEEESSCC
T ss_pred             HHHHHHHHHhhccCCEEEEEecC
Confidence            4332  22346776677777754

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=95.82  E-value=0.016  Score=51.34  Aligned_cols=33  Identities=24%  Similarity=0.221  Sum_probs=29.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      +|+|+|.|++|.+|+.++..|.++|++|+++.|
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r   41 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVR   41 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEc
Confidence            789999999888999999999999999987654

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=95.81  E-value=0.0091  Score=51.61  Aligned_cols=68  Identities=16%  Similarity=0.195  Sum_probs=49.5

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC-C-------------CCHhhhcCCCCEEEeccCCCCc---cc--CCCc
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-T-------------KNPEQITSEADIVIAAAGVANL---VR--GSWL  198 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-t-------------~~l~~~~~~aDiVIsAtg~p~~---i~--~~~~  198 (269)
                      +|.|||.|.+ |.+++..|.+.|.+|+++++. .             .+..+.++++|+||.+++.+..   +.  .+.+
T Consensus         2 ~I~iIG~G~m-G~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~aDvvi~~v~~~~~~~~~~~~~~~~   80 (264)
T 1i36_A            2 RVGFIGFGEV-AQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGRHV   80 (264)
T ss_dssp             EEEEESCSHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTC
T ss_pred             eEEEEechHH-HHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCcCCHHHHHhcCCEEEEECCCHHHHHHHHHHHHhc
Confidence            6899999887 999999999999999987662 1             1334567889999999986431   11  1124


Q ss_pred             CCCcEEEEee
Q 024306          199 KPGAVVLDVG  208 (269)
Q Consensus       199 ~~g~vViDv~  208 (269)
                      ++  +++|+.
T Consensus        81 ~~--~vi~~s   88 (264)
T 1i36_A           81 RG--IYVDIN   88 (264)
T ss_dssp             CS--EEEECS
T ss_pred             Cc--EEEEcc
Confidence            44  888875

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.81  E-value=0.018  Score=50.96  Aligned_cols=53  Identities=19%  Similarity=0.271  Sum_probs=41.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcCCCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~aDiVIsAtg~  189 (269)
                      .+|+|.|++|.+|+.++..|.++|++|+++.|...                     ++.+.++..|+||...+.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~   87 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGY   87 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence            47999999898999999999999999999877532                     133556788999988774

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=95.81  E-value=0.085  Score=48.69  Aligned_cols=162  Identities=16%  Similarity=0.111  Sum_probs=104.7

Q ss_pred             HHHHHHHHcCCeEEEEEcCC-C-CCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccccccceecc
Q 024306           28 NKIKACEEVGIKSIVTEFAD-G-CTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGN  105 (269)
Q Consensus        28 ~~~~~~~~~Gi~~~~~~~~~-~-~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg~~~~n~g~  105 (269)
                      +-..++.++|.++.++.-.. . -.-|-+.+.++-|..-  +|+|.+--|-.      ..+..+....   ++-.+|.| 
T Consensus        88 SFE~A~~~LGg~vi~l~~~~ss~~kgEsl~DTarvLs~~--~D~IviR~~~~------~~~~~lA~~s---~vPVINa~-  155 (365)
T 4amu_A           88 AFEVAASDLGAGVTYIGPSGSNMGKKESIEDTAKVLGRF--YDGIEFRGFAQ------SDVDALVKYS---GVPVWNGL-  155 (365)
T ss_dssp             HHHHHHHHHTCEEEEECHHHHCCSSSSCHHHHHHHHHHH--CSEEEEECSCH------HHHHHHHHHH---CSCEEEEE-
T ss_pred             HHHHHHHhCCCEEEEcCCccccCCCCcCHHHHHHHHHhh--CcEEEEecCCh------hHHHHHHHhC---CCCEEeCC-
Confidence            45678999999999873210 0 0124466666666663  68998876632      2222222111   23345652 


Q ss_pred             cccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCCC-------------
Q 024306          106 LAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHALT-------------  170 (269)
Q Consensus       106 l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~t-------------  170 (269)
                            ++.+.||=+.+ ++.+.|+.+ .++|++|+++|-+ ..|++.++.+++..|++|+++....             
T Consensus       156 ------~~~~HPtQaLaDl~Ti~E~~G-~l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~  228 (365)
T 4amu_A          156 ------TDDEHPTQIIADFMTMKEKFG-NLKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKC  228 (365)
T ss_dssp             ------CSSCCHHHHHHHHHHHHHHHS-SCTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHH
T ss_pred             ------CCCCCcHHHHHHHHHHHHHhC-CCCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHH
Confidence                  23456887777 455555555 5999999999987 4579999999999999999985421             


Q ss_pred             --------------CCHhhhcCCCCEEEecc----CCC------------Cc-ccCCCc---CCCcEEEEee
Q 024306          171 --------------KNPEQITSEADIVIAAA----GVA------------NL-VRGSWL---KPGAVVLDVG  208 (269)
Q Consensus       171 --------------~~l~~~~~~aDiVIsAt----g~p------------~~-i~~~~~---~~g~vViDv~  208 (269)
                                    .++.+.+++||+|.+-+    |.+            .+ ++.+.+   +++++|+=+.
T Consensus       229 ~~~~~~~g~~i~~~~d~~eav~~aDVVytd~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcL  300 (365)
T 4amu_A          229 IELFKRNGGSLRFSTDKILAAQDADVIYTDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCL  300 (365)
T ss_dssp             HHHHHHHSCEEEEESCHHHHTTTCSEEEECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECS
T ss_pred             HHHHHHcCCEEEEECCHHHHhcCCCEEEecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence                          34567899999999742    311            13 566654   4677776655

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.81  E-value=0.0099  Score=54.38  Aligned_cols=93  Identities=15%  Similarity=0.170  Sum_probs=60.2

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC---------------------CHh
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---------------------NPE  174 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~---------------------~l~  174 (269)
                      ||.....+..+.+..---.|.+|+|+|+|+ +|..+++++...|+ +|+.+.+...                     ++.
T Consensus       175 ~~~~~ta~~al~~~~~~~~g~~VlV~GaG~-vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~  253 (378)
T 3uko_A          175 GCGVPTGLGAVWNTAKVEPGSNVAIFGLGT-VGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQ  253 (378)
T ss_dssp             GTHHHHHHHHHHTTTCCCTTCCEEEECCSH-HHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHH
T ss_pred             hhhHHHHHHHHHhhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHH
Confidence            333333344343332234699999999966 59999999999999 6888764421                     122


Q ss_pred             hhcC-----CCCEEEeccCCCCcc--cCCCcCCC-cEEEEeeec
Q 024306          175 QITS-----EADIVIAAAGVANLV--RGSWLKPG-AVVLDVGTC  210 (269)
Q Consensus       175 ~~~~-----~aDiVIsAtg~p~~i--~~~~~~~g-~vViDv~~~  210 (269)
                      +.++     .+|+||.++|.+..+  .-+.++++ -.++.+|..
T Consensus       254 ~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~  297 (378)
T 3uko_A          254 EVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVA  297 (378)
T ss_dssp             HHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             HHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEccc
Confidence            2111     489999999976443  23467885 777788864

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=95.79  E-value=0.011  Score=50.56  Aligned_cols=36  Identities=31%  Similarity=0.277  Sum_probs=31.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +.+|+++|.|+++-+|+++++.|+++|++|.++.+.
T Consensus         2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~   37 (246)
T 3osu_A            2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAG   37 (246)
T ss_dssp             CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            468999999998888999999999999999887653

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=95.79  E-value=0.011  Score=50.91  Aligned_cols=38  Identities=29%  Similarity=0.374  Sum_probs=34.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (263)
T 3ai3_A            3 MGISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQ   40 (263)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            45789999999998888999999999999999998765

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.78  E-value=0.009  Score=54.08  Aligned_cols=88  Identities=20%  Similarity=0.175  Sum_probs=60.4

Q ss_pred             HHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHh----hhc
Q 024306          122 GCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPE----QIT  177 (269)
Q Consensus       122 g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l~----~~~  177 (269)
                      -++..++..++ -.|.+|+|+|+|+ +|..+++++...|+ +|+.+.+..                   .++.    +.+
T Consensus       154 ta~~al~~~~~-~~g~~VlV~GaG~-vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t  231 (352)
T 3fpc_A          154 TGFHGAELANI-KLGDTVCVIGIGP-VGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKAT  231 (352)
T ss_dssp             HHHHHHHHTTC-CTTCCEEEECCSH-HHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHT
T ss_pred             HHHHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHc
Confidence            34455544433 4699999999876 59999999999999 688886542                   1222    222


Q ss_pred             C--CCCEEEeccCCCCcc--cCCCcCCCcEEEEeeecC
Q 024306          178 S--EADIVIAAAGVANLV--RGSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       178 ~--~aDiVIsAtg~p~~i--~~~~~~~g~vViDv~~~~  211 (269)
                      .  .+|+||+++|.+..+  .-+.++++-.++.++...
T Consensus       232 ~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~  269 (352)
T 3fpc_A          232 DGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLG  269 (352)
T ss_dssp             TTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             CCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecccC
Confidence            2  489999999986543  234678877788887653

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.76  E-value=0.013  Score=52.48  Aligned_cols=51  Identities=16%  Similarity=0.307  Sum_probs=41.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCC--------------------------CCCHhhhcCCCCEEEeccCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHAL--------------------------TKNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~--------------------------t~~l~~~~~~aDiVIsAtg~  189 (269)
                      +|.|||+|. +|.+++..|+..+.  +|+++.+.                          +.+ .+.+++||+||.++|.
T Consensus         2 kI~ViGaG~-vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            2 KLGFVGAGR-VGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             EEEEECCCH-HHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            699999966 49999999998886  78888543                          123 5788999999999986


Q ss_pred             C
Q 024306          190 A  190 (269)
Q Consensus       190 p  190 (269)
                      |
T Consensus        80 ~   80 (294)
T 1oju_A           80 A   80 (294)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.76  E-value=0.016  Score=51.96  Aligned_cols=52  Identities=21%  Similarity=0.376  Sum_probs=40.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC--------------------------CCHhhhcCCCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT--------------------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t--------------------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      .+|+|||+|. ||.+++..|+..|. +|.+++...                          .++ +.+++||+||.++|.
T Consensus         3 ~kI~VIGaG~-vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~   80 (309)
T 1ur5_A            3 KKISIIGAGF-VGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGA   80 (309)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CEEEEECCCH-HHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCC
Confidence            5799999966 59999999999985 877775431                          233 668999999999986


Q ss_pred             C
Q 024306          190 A  190 (269)
Q Consensus       190 p  190 (269)
                      |
T Consensus        81 p   81 (309)
T 1ur5_A           81 P   81 (309)
T ss_dssp             -
T ss_pred             C
Confidence            5

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.75  E-value=0.009  Score=56.10  Aligned_cols=37  Identities=24%  Similarity=0.329  Sum_probs=33.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      ++++|+|+|||.|++ |.+++..|.++|++|+.++++.
T Consensus         2 ~~~~~~v~viG~G~~-G~~~a~~l~~~G~~v~~~D~~~   38 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLT-GLSCVDFFLARGVTPRVMDTRM   38 (439)
T ss_dssp             CCTTCCEEEECCHHH-HHHHHHHHHTTTCCCEEEESSS
T ss_pred             CCCCCEEEEEeecHH-HHHHHHHHHhCCCEEEEEECCC
Confidence            367899999999998 9999999999999999998753

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.75  E-value=0.017  Score=52.65  Aligned_cols=75  Identities=19%  Similarity=0.203  Sum_probs=52.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC---------------------CHhhhc-----CCCCEEEec
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---------------------NPEQIT-----SEADIVIAA  186 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~---------------------~l~~~~-----~~aDiVIsA  186 (269)
                      -.|++|+|+|+|+ +|..+++++...|+ +|+.+.+...                     ++.+.+     ..+|+||++
T Consensus       194 ~~g~~VlV~GaG~-vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~  272 (376)
T 1e3i_A          194 TPGSTCAVFGLGC-VGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC  272 (376)
T ss_dssp             CTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEEC
Confidence            3689999999866 59999999999999 7887754321                     122222     148999999


Q ss_pred             cCCCCcc--cCCCcCCC-cEEEEeee
Q 024306          187 AGVANLV--RGSWLKPG-AVVLDVGT  209 (269)
Q Consensus       187 tg~p~~i--~~~~~~~g-~vViDv~~  209 (269)
                      +|.+..+  .-+.++++ -.++-++.
T Consensus       273 ~G~~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          273 AGTAQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             SCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             CCCHHHHHHHHHHhhcCCCEEEEECC
Confidence            9875432  23467777 67777776

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.75  E-value=0.043  Score=49.06  Aligned_cols=71  Identities=21%  Similarity=0.275  Sum_probs=50.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------------CCHhhhcCCCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      .+|+|||+|.. |..++..|++.|.+|+++.|..                           .+..+..+.+|+||-++..
T Consensus         3 mkI~IiGaGai-G~~~a~~L~~~g~~V~~~~r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~   81 (320)
T 3i83_A            3 LNILVIGTGAI-GSFYGALLAKTGHCVSVVSRSDYETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKV   81 (320)
T ss_dssp             CEEEEESCCHH-HHHHHHHHHHTTCEEEEECSTTHHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCC
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEeCChHHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCC
Confidence            57999999886 9999999999999999987652                           1122233479999999985


Q ss_pred             CCc---c--cCCCcCCCcEEEEee
Q 024306          190 ANL---V--RGSWLKPGAVVLDVG  208 (269)
Q Consensus       190 p~~---i--~~~~~~~g~vViDv~  208 (269)
                      ...   +  -...++++++|+.+.
T Consensus        82 ~~~~~~l~~l~~~l~~~t~Iv~~~  105 (320)
T 3i83_A           82 VEGADRVGLLRDAVAPDTGIVLIS  105 (320)
T ss_dssp             CTTCCHHHHHTTSCCTTCEEEEEC
T ss_pred             CChHHHHHHHHhhcCCCCEEEEeC
Confidence            332   1  123456677776653

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=95.74  E-value=0.0061  Score=52.52  Aligned_cols=54  Identities=19%  Similarity=0.193  Sum_probs=44.0

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------CHhhhcCCCCEEEeccCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------~l~~~~~~aDiVIsAtg~  189 (269)
                      .|+|+|.|++|.+|+.++..|.++|++|+++.|...                  .+.+.++..|+||+..+.
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   73 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIVACDLADAQAVHDLVKDCDGIIHLGGV   73 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCCCTTEEECCCCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred             CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccEEEccCCCHHHHHHHHcCCCEEEECCcC
Confidence            368999999888999999999999999998876531                  134567789999988774

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=95.74  E-value=0.01  Score=51.10  Aligned_cols=37  Identities=11%  Similarity=0.082  Sum_probs=31.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++.+|+++|.|+++-+|+++++.|+++|++|.++.+.
T Consensus         4 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~   40 (264)
T 3i4f_A            4 GRFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHS   40 (264)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ccccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCC
Confidence            4568999999998888999999999999999988554

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=95.74  E-value=0.012  Score=51.06  Aligned_cols=38  Identities=32%  Similarity=0.289  Sum_probs=34.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||.++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~   41 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARD   41 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            56899999999998888999999999999999998765

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=95.74  E-value=0.011  Score=50.44  Aligned_cols=37  Identities=24%  Similarity=0.264  Sum_probs=34.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++|+++|.|+++-+|+.+++.|+++|++|.++.|.
T Consensus        10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~   46 (260)
T 3awd_A           10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLD   46 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999989999999999999999998765

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=95.73  E-value=0.0087  Score=51.28  Aligned_cols=70  Identities=20%  Similarity=0.231  Sum_probs=52.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEE-EEEeCCC------CCHhhhc-CCCCEEEeccCCC-Cc-ccCCCcCCCcEEEEe
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATV-SIVHALT------KNPEQIT-SEADIVIAAAGVA-NL-VRGSWLKPGAVVLDV  207 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~V-ti~~~~t------~~l~~~~-~~aDiVIsAtg~p-~~-i~~~~~~~g~vViDv  207 (269)
                      +|.|||.|.+ |+.++..|.+.|.++ .++++..      .++.+.+ .++|+||.+++.. +. +-...++.|..|++.
T Consensus         2 ~vgiIG~G~m-G~~~~~~l~~~g~~lv~v~d~~~~~~~~~~~~~~l~~~~~DvVv~~~~~~~~~~~~~~~l~~G~~vv~~   80 (236)
T 2dc1_A            2 LVGLIGYGAI-GKFLAEWLERNGFEIAAILDVRGEHEKMVRGIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDLIVL   80 (236)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEEECSSCCCTTEESSHHHHTTSCCSEEEECSCHHHHHHHHHHHHHTTCEEEES
T ss_pred             EEEEECCCHH-HHHHHHHHhcCCCEEEEEEecCcchhhhcCCHHHHhcCCCCEEEECCCHHHHHHHHHHHHHCCCcEEEE
Confidence            6899999876 999999998888886 6887653      2567777 6899999999832 21 223456788888886


Q ss_pred             e
Q 024306          208 G  208 (269)
Q Consensus       208 ~  208 (269)
                      .
T Consensus        81 ~   81 (236)
T 2dc1_A           81 S   81 (236)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=95.73  E-value=0.012  Score=50.80  Aligned_cols=38  Identities=29%  Similarity=0.411  Sum_probs=34.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|.
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   45 (263)
T 3ak4_A            8 FDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLD   45 (263)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999889999999999999999998765

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=95.73  E-value=0.011  Score=51.40  Aligned_cols=40  Identities=20%  Similarity=0.232  Sum_probs=35.0

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       130 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ...+++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        15 ~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~   54 (267)
T 1vl8_A           15 EVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN   54 (267)
T ss_dssp             --CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3467899999999999889999999999999999998765

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=95.73  E-value=0.0075  Score=57.54  Aligned_cols=71  Identities=13%  Similarity=0.245  Sum_probs=52.9

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------CCHhhhcC---CCCEEEeccCCCC-
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------KNPEQITS---EADIVIAAAGVAN-  191 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------~~l~~~~~---~aDiVIsAtg~p~-  191 (269)
                      +|.|||.|.+ |.+++..|++.|.+|++++|+.                      .++.+.++   .+|+||.+++.+. 
T Consensus         3 kIgVIG~G~m-G~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            3 DVGVVGLGVM-GANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             EEEEEChHHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            6999999886 9999999999999999998752                      12334444   4999999998742 


Q ss_pred             c---cc--CCCcCCCcEEEEeee
Q 024306          192 L---VR--GSWLKPGAVVLDVGT  209 (269)
Q Consensus       192 ~---i~--~~~~~~g~vViDv~~  209 (269)
                      .   +.  ...++++.+|||++.
T Consensus        82 v~~vl~~l~~~l~~g~iIId~sn  104 (478)
T 1pgj_A           82 TDSTIEQLKKVFEKGDILVDTGN  104 (478)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECCC
T ss_pred             HHHHHHHHHhhCCCCCEEEECCC
Confidence            1   21  124678899999863

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=95.72  E-value=0.009  Score=51.24  Aligned_cols=40  Identities=18%  Similarity=0.272  Sum_probs=35.4

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      ..+++||+++|.|+++-+|+.+++.|+++|++|.++.|+.
T Consensus        10 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   49 (247)
T 1uzm_A           10 KPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGS   49 (247)
T ss_dssp             CCCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            3457899999999988899999999999999999987753

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=95.71  E-value=0.012  Score=52.24  Aligned_cols=33  Identities=18%  Similarity=0.238  Sum_probs=30.1

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      +|+|+|.|++|.+|+.++..|.++|++|+++.|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r   34 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEec
Confidence            578999999888999999999999999998865

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=95.70  E-value=0.011  Score=51.49  Aligned_cols=34  Identities=15%  Similarity=0.205  Sum_probs=30.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +|+|+|-|+++-+|+++|+.|+++|++|.++.++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~   35 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDID   35 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4889999988778999999999999999999875

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=95.70  E-value=0.012  Score=50.75  Aligned_cols=37  Identities=24%  Similarity=0.171  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   42 (260)
T 2ae2_A            6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN   42 (260)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999888999999999999999998765

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=95.70  E-value=0.012  Score=50.88  Aligned_cols=37  Identities=32%  Similarity=0.340  Sum_probs=34.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~   41 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRN   41 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999998888999999999999999999775

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=95.70  E-value=0.022  Score=51.65  Aligned_cols=55  Identities=25%  Similarity=0.314  Sum_probs=43.0

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------------CCHhhhcCCCCEEEeccC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------------KNPEQITSEADIVIAAAG  188 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------------~~l~~~~~~aDiVIsAtg  188 (269)
                      +.++|.|||+|.+ |.+++..|+..+. +|.+++...                         .+..+.+++||+||.++|
T Consensus         4 ~~~kI~iiGaG~v-G~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag   82 (321)
T 3p7m_A            4 ARKKITLVGAGNI-GGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAG   82 (321)
T ss_dssp             CCCEEEEECCSHH-HHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCS
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCC
Confidence            4578999999775 9999999998886 888885431                         012467899999999998


Q ss_pred             CC
Q 024306          189 VA  190 (269)
Q Consensus       189 ~p  190 (269)
                      .|
T Consensus        83 ~p   84 (321)
T 3p7m_A           83 VP   84 (321)
T ss_dssp             CC
T ss_pred             cC
Confidence            65

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=95.69  E-value=0.011  Score=52.60  Aligned_cols=53  Identities=21%  Similarity=0.337  Sum_probs=42.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCCC--------------------------CHhhhcCCCCEEEeccC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALTK--------------------------NPEQITSEADIVIAAAG  188 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~t~--------------------------~l~~~~~~aDiVIsAtg  188 (269)
                      ++|+|.|++|.+|+.++..|.++  |++|+++.|...                          .+.+.++.+|+||...+
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~   84 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAA   84 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEECCc
Confidence            68999999999999999999998  789998876420                          12356678899998887


Q ss_pred             C
Q 024306          189 V  189 (269)
Q Consensus       189 ~  189 (269)
                      .
T Consensus        85 ~   85 (348)
T 1oc2_A           85 E   85 (348)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.69  E-value=0.016  Score=52.71  Aligned_cols=77  Identities=18%  Similarity=0.161  Sum_probs=54.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC---------------------CHhhhcC-----CCCEEEec
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---------------------NPEQITS-----EADIVIAA  186 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~---------------------~l~~~~~-----~aDiVIsA  186 (269)
                      -.|++|+|+|+|+ +|..+++++...|+ +|+.+.+...                     ++.+.++     .+|+||++
T Consensus       189 ~~g~~VlV~GaG~-vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~  267 (373)
T 2fzw_A          189 EPGSVCAVFGLGG-VGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC  267 (373)
T ss_dssp             CTTCEEEEECCSH-HHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEEC
Confidence            4689999999866 59999999999999 7887754321                     1222221     48999999


Q ss_pred             cCCCCcc--cCCCcCCC-cEEEEeeecC
Q 024306          187 AGVANLV--RGSWLKPG-AVVLDVGTCP  211 (269)
Q Consensus       187 tg~p~~i--~~~~~~~g-~vViDv~~~~  211 (269)
                      +|.+..+  .-+.++++ -.++.++...
T Consensus       268 ~g~~~~~~~~~~~l~~~~G~iv~~G~~~  295 (373)
T 2fzw_A          268 IGNVKVMRAALEACHKGWGVSVVVGVAA  295 (373)
T ss_dssp             SCCHHHHHHHHHTBCTTTCEEEECSCCC
T ss_pred             CCcHHHHHHHHHhhccCCcEEEEEecCC
Confidence            9875432  23467887 7777888543

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.69  E-value=0.012  Score=53.41  Aligned_cols=52  Identities=10%  Similarity=0.135  Sum_probs=43.2

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC---------------------------------------CCCHhhh
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL---------------------------------------TKNPEQI  176 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~---------------------------------------t~~l~~~  176 (269)
                      -++|.|||+|-+ |+.+|..++..|.+|++....                                       +.++.+.
T Consensus         6 ~~~VaViGaG~M-G~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            6 AGDVLIVGSGLV-GRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             -CEEEEECCSHH-HHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCeEEEECCcHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            468999999886 999999999999999999543                                       1245678


Q ss_pred             cCCCCEEEeccC
Q 024306          177 TSEADIVIAAAG  188 (269)
Q Consensus       177 ~~~aDiVIsAtg  188 (269)
                      +++||+||-|+.
T Consensus        85 ~~~ad~ViEav~   96 (319)
T 3ado_A           85 VEGVVHIQECVP   96 (319)
T ss_dssp             TTTEEEEEECCC
T ss_pred             hccCcEEeeccc
Confidence            899999998886

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=95.69  E-value=0.01  Score=50.30  Aligned_cols=38  Identities=24%  Similarity=0.301  Sum_probs=34.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+.+++.|+++|++|+++.|.
T Consensus         3 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~   40 (248)
T 2pnf_A            3 IKLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTS   40 (248)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999999999999999999999999998765

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.68  E-value=0.013  Score=51.87  Aligned_cols=36  Identities=25%  Similarity=0.146  Sum_probs=30.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      -.+++|+|.|++|.+|+.++..|.++|++|+++.|.
T Consensus        12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   47 (335)
T 1rpn_A           12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVAR   47 (335)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCC
Confidence            468899999999999999999999999999998775

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=95.68  E-value=0.015  Score=51.26  Aligned_cols=53  Identities=15%  Similarity=0.195  Sum_probs=42.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcC--CCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITS--EADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~--~aDiVIsAtg~  189 (269)
                      ++|+|.|++|.+|+.++..|.++|++|+++.|...                     .+.+.++  ..|+||...+.
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~   77 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAAD   77 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCcc
Confidence            57999999999999999999999999998876421                     1234455  78999988774

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=95.68  E-value=0.0081  Score=50.10  Aligned_cols=70  Identities=16%  Similarity=0.191  Sum_probs=50.2

Q ss_pred             eEEEEc-CCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcCCCCEEEeccCCCC---c
Q 024306          138 NAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGVAN---L  192 (269)
Q Consensus       138 ~v~ViG-~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~aDiVIsAtg~p~---~  192 (269)
                      +++|+| +|. +|++++..|.+.|.+|++++|+..                     ++.+.++++|+||.+++...   .
T Consensus         2 ~i~iiGa~G~-~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~~~~~~~~   80 (212)
T 1jay_A            2 RVALLGGTGN-LGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHAIDT   80 (212)
T ss_dssp             EEEEETTTSH-HHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHHHHHH
T ss_pred             eEEEEcCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCChhhHHHH
Confidence            689999 655 599999999999999999987521                     12344677999999998422   1


Q ss_pred             cc--CCCcCCCcEEEEeee
Q 024306          193 VR--GSWLKPGAVVLDVGT  209 (269)
Q Consensus       193 i~--~~~~~~g~vViDv~~  209 (269)
                      +.  ...+ ++.+++|+..
T Consensus        81 ~~~l~~~~-~~~~vi~~~~   98 (212)
T 1jay_A           81 ARDLKNIL-REKIVVSPLV   98 (212)
T ss_dssp             HHHTHHHH-TTSEEEECCC
T ss_pred             HHHHHHHc-CCCEEEEcCC
Confidence            11  0123 4889999874

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=95.67  E-value=0.013  Score=52.35  Aligned_cols=54  Identities=19%  Similarity=0.157  Sum_probs=43.4

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCC-----CEEEEEeCCCC--------------------CHhhhcCC---CCEEEecc
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHH-----ATVSIVHALTK--------------------NPEQITSE---ADIVIAAA  187 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~g-----a~Vti~~~~t~--------------------~l~~~~~~---aDiVIsAt  187 (269)
                      |++|+|.|++|.+|+.++..|.++|     .+|+++.|...                    .+.+.++.   .|+||..+
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih~a   80 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFYVT   80 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSCCCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccccccCceEEEEeecCCHHHHHHHHhcCCCCCEEEECC
Confidence            5789999999999999999999999     89998876421                    13355666   89999887


Q ss_pred             CC
Q 024306          188 GV  189 (269)
Q Consensus       188 g~  189 (269)
                      +.
T Consensus        81 ~~   82 (364)
T 2v6g_A           81 WA   82 (364)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.67  E-value=0.0065  Score=52.57  Aligned_cols=53  Identities=9%  Similarity=0.080  Sum_probs=42.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCCC---------------------CHhhhcCCCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALTK---------------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~t~---------------------~l~~~~~~aDiVIsAtg~  189 (269)
                      |+|+|.|++|.+|+.++..|.++  |++|+++.|...                     ++.+.++++|+||..++.
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   76 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGP   76 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCC
Confidence            57999999888999999999998  889999877532                     134566778999977763

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=95.67  E-value=0.012  Score=50.39  Aligned_cols=37  Identities=27%  Similarity=0.326  Sum_probs=33.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   40 (250)
T 2fwm_X            4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQA   40 (250)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCc
Confidence            5789999999998888999999999999999998765

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.67  E-value=0.021  Score=52.05  Aligned_cols=55  Identities=18%  Similarity=0.420  Sum_probs=43.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCC-------------------------CCCHhhhcCCCCEEEec
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHAL-------------------------TKNPEQITSEADIVIAA  186 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~-------------------------t~~l~~~~~~aDiVIsA  186 (269)
                      ...++|.|||+|.+ |.++++.|+.+|.  ++.+++..                         +.+. +.+++||+||.+
T Consensus        17 ~~~~kV~ViGaG~v-G~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~~~~~aDiVvi~   94 (331)
T 4aj2_A           17 VPQNKITVVGVGAV-GMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-SVTANSKLVIIT   94 (331)
T ss_dssp             CCSSEEEEECCSHH-HHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-GGGTTEEEEEEC
T ss_pred             CCCCEEEEECCCHH-HHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-HHhCCCCEEEEc
Confidence            46789999999765 9999999998885  68888543                         1222 468999999999


Q ss_pred             cCCC
Q 024306          187 AGVA  190 (269)
Q Consensus       187 tg~p  190 (269)
                      .|.|
T Consensus        95 aG~~   98 (331)
T 4aj2_A           95 AGAR   98 (331)
T ss_dssp             CSCC
T ss_pred             cCCC
Confidence            9864

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=95.66  E-value=0.012  Score=50.31  Aligned_cols=37  Identities=24%  Similarity=0.214  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++++|+++|.|+++-+|+.++..|+++|++|+++.|.
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~   40 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLD   40 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999989999999999999999998765

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=95.65  E-value=0.012  Score=50.50  Aligned_cols=37  Identities=22%  Similarity=0.224  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   45 (252)
T 3f1l_A            9 LLNDRIILVTGASDGIGREAAMTYARYGATVILLGRN   45 (252)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998888999999999999999998765

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=95.65  E-value=0.011  Score=51.59  Aligned_cols=38  Identities=24%  Similarity=0.218  Sum_probs=34.8

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+++++.|+++|++|.++.|.
T Consensus        26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~   63 (281)
T 3ppi_A           26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLA   63 (281)
T ss_dssp             GGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999998888999999999999999999876

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=95.65  E-value=0.015  Score=55.54  Aligned_cols=74  Identities=23%  Similarity=0.411  Sum_probs=53.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCC---------------C------------------CHhhhcCCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALT---------------K------------------NPEQITSEAD  181 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~t---------------~------------------~l~~~~~~aD  181 (269)
                      .+|.|||.|.+ |.++|..|++.  |.+|++++++.               +                  ++.+.+++||
T Consensus        10 mkI~VIG~G~v-G~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aD   88 (481)
T 2o3j_A           10 SKVVCVGAGYV-GGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEAD   88 (481)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred             CEEEEECCCHH-HHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCC
Confidence            48999999886 99999999998  67999997641               1                  1234467899


Q ss_pred             EEEeccCCCCc--------------cc------CCCcCCCcEEEEeeecC
Q 024306          182 IVIAAAGVANL--------------VR------GSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       182 iVIsAtg~p~~--------------i~------~~~~~~g~vViDv~~~~  211 (269)
                      +||.+++.|.-              +.      ...++++++|+|....+
T Consensus        89 vvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~  138 (481)
T 2o3j_A           89 LIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVP  138 (481)
T ss_dssp             EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCC
T ss_pred             EEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence            99999886521              11      12357789999865443

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.65  E-value=0.013  Score=50.23  Aligned_cols=37  Identities=16%  Similarity=0.226  Sum_probs=33.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus         2 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   38 (245)
T 1uls_A            2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIE   38 (245)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3679999999998888999999999999999998775

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.64  E-value=0.012  Score=50.57  Aligned_cols=38  Identities=21%  Similarity=0.277  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +++||+++|.|+++-+|++++..|+++|++|.++.|+.
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   40 (256)
T 2d1y_A            3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP   40 (256)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            46899999999998889999999999999999987753

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=95.64  E-value=0.013  Score=50.24  Aligned_cols=37  Identities=30%  Similarity=0.346  Sum_probs=33.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~   40 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARR   40 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4789999999999888999999999999999998775

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.64  E-value=0.0086  Score=54.60  Aligned_cols=94  Identities=16%  Similarity=0.154  Sum_probs=60.1

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHhh
Q 024306          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPEQ  175 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l~~  175 (269)
                      +||...-++..+.+..---.|++|+|+|+|+ +|..+++++...|+ .|+.+.+..                   .++.+
T Consensus       171 l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~-vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~  249 (371)
T 1f8f_A          171 LGCGIQTGAGACINALKVTPASSFVTWGAGA-VGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVA  249 (371)
T ss_dssp             GGTHHHHHHHHHHTTTCCCTTCEEEEESCSH-HHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHH
T ss_pred             hcchHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHH
Confidence            3444334444553222223689999999866 59999999988999 677775431                   12222


Q ss_pred             hcC-----CCCEEEeccCCCCcc--cCCCcCCCcEEEEeeec
Q 024306          176 ITS-----EADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       176 ~~~-----~aDiVIsAtg~p~~i--~~~~~~~g~vViDv~~~  210 (269)
                      .++     .+|+||+++|.+..+  .-+.++++-.++.++..
T Consensus       250 ~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~  291 (371)
T 1f8f_A          250 AIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAP  291 (371)
T ss_dssp             HHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             HHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCC
Confidence            221     479999999875432  23467777777778764

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=95.64  E-value=0.01  Score=51.39  Aligned_cols=38  Identities=21%  Similarity=0.371  Sum_probs=34.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   43 (262)
T 3pk0_A            6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRS   43 (262)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46899999999998888999999999999999998765

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=95.63  E-value=0.013  Score=51.25  Aligned_cols=38  Identities=21%  Similarity=0.174  Sum_probs=34.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~   44 (281)
T 3svt_A            7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRN   44 (281)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46889999999998888999999999999999998765

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=95.63  E-value=0.011  Score=50.34  Aligned_cols=37  Identities=19%  Similarity=0.280  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++||+++|.|+++-+|+.+++.|+++|++|.++.|+
T Consensus        11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~   47 (247)
T 3i1j_A           11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRT   47 (247)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecC
Confidence            4789999999998888999999999999999998765

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=95.63  E-value=0.01  Score=50.49  Aligned_cols=38  Identities=18%  Similarity=0.292  Sum_probs=34.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+.++..|+++|++|+++.|.
T Consensus         7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~   44 (255)
T 1fmc_A            7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN   44 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCC
Confidence            35789999999998889999999999999999998765

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=95.61  E-value=0.013  Score=51.05  Aligned_cols=38  Identities=21%  Similarity=0.352  Sum_probs=34.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+++++.|+++|++|.++.|.
T Consensus         6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~   43 (281)
T 3s55_A            6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRC   43 (281)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            35789999999998888999999999999999998874

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.61  E-value=0.031  Score=50.33  Aligned_cols=120  Identities=16%  Similarity=0.065  Sum_probs=66.3

Q ss_pred             cceEEEEcCCcccHHH-HHHHHHhCCCEEEEEeCCCC-CHhhhcCCCCEEEeccCCCCcccCCCcC---CCcEEEEeeec
Q 024306          136 GKNAVVIGRSNIVGLP-TSLLLQRHHATVSIVHALTK-NPEQITSEADIVIAAAGVANLVRGSWLK---PGAVVLDVGTC  210 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~-~a~~L~~~ga~Vti~~~~t~-~l~~~~~~aDiVIsAtg~p~~i~~~~~~---~g~vViDv~~~  210 (269)
                      .|++.|||.|++ |.+ +|++|.++|++|++++++.. ...+.+++..+-+. .|.    .++.+.   ...+|+--+++
T Consensus         4 ~~~i~~iGiGg~-Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~-~g~----~~~~l~~~~~d~vV~Spgi~   77 (326)
T 3eag_A            4 MKHIHIIGIGGT-FMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVY-EGF----DAAQLDEFKADVYVIGNVAK   77 (326)
T ss_dssp             CCEEEEESCCSH-HHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEE-ESC----CGGGGGSCCCSEEEECTTCC
T ss_pred             CcEEEEEEECHH-HHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEE-CCC----CHHHcCCCCCCEEEECCCcC
Confidence            478999999998 995 89999999999999987642 22222332222221 111    111111   12333333333


Q ss_pred             CCCCCC----CCCCceeecccchHH-HhhHcceecccCCcccHHHHHHHHHHHHHHH
Q 024306          211 PVDDPS----CEYGYRLMGDVCYEE-AMRLASVITPVPGGVGPMTVAMLLSNTLDSA  262 (269)
Q Consensus       211 ~~~~~~----~~~~~~l~GDvd~~~-~~~~~~~~tpvpgGvGp~T~~mLl~n~v~a~  262 (269)
                      +.. |.    ...|-++++++++-. ...+...+.-|-|--|.=|+..|+.+++++.
T Consensus        78 ~~~-p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~  133 (326)
T 3eag_A           78 RGM-DVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA  133 (326)
T ss_dssp             TTC-HHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred             CCC-HHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            211 00    001225677665321 1111222334568889999999999988764

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=95.61  E-value=0.014  Score=50.25  Aligned_cols=38  Identities=24%  Similarity=0.265  Sum_probs=33.4

Q ss_pred             CCCccceEEEEcCCcc--cHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNI--VGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~--vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|++|.  +|+++++.|+++|++|.++.|.
T Consensus         3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~   42 (266)
T 3oig_A            3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAG   42 (266)
T ss_dssp             SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCc
Confidence            4688999999999865  7999999999999999988654

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.60  E-value=0.023  Score=53.45  Aligned_cols=53  Identities=21%  Similarity=0.306  Sum_probs=44.5

Q ss_pred             cccCCHHHHHHH----HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE-EEeC
Q 024306          115 FIPCTPKGCIEL----LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHA  168 (269)
Q Consensus       115 ~~p~t~~g~~~~----l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt-i~~~  168 (269)
                      ..+.|++|++..    +++.+.+++||+|+|.|.|++ |..+++.|.+.|++|. ++++
T Consensus       193 r~~aTg~Gv~~~~~~~~~~~g~~l~gk~vaVqG~GnV-G~~~a~~L~~~GakVVavsD~  250 (419)
T 3aoe_E          193 RDDAAGLGALLVLEALAKRRGLDLRGARVVVQGLGQV-GAAVALHAERLGMRVVAVATS  250 (419)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEEET
T ss_pred             CccchHHHHHHHHHHHHHhcCCCccCCEEEEECcCHH-HHHHHHHHHHCCCEEEEEEcC
Confidence            346799987655    456789999999999999885 9999999999999966 7766

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=95.60  E-value=0.013  Score=50.17  Aligned_cols=38  Identities=21%  Similarity=0.267  Sum_probs=34.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +++||+++|.|+++-+|++++..|+++|++|.++.|+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (249)
T 2ew8_A            4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   41 (249)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            47899999999998899999999999999999987764

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=95.60  E-value=0.013  Score=50.39  Aligned_cols=37  Identities=32%  Similarity=0.357  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (260)
T 2z1n_A            4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRN   40 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999889999999999999999998775

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=95.60  E-value=0.013  Score=50.83  Aligned_cols=38  Identities=11%  Similarity=0.190  Sum_probs=34.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++++|+++|.|+++-+|+.++..|+++|++|+++.|.
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~   64 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDIN   64 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcC
Confidence            56899999999999989999999999999999998775

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=95.60  E-value=0.011  Score=51.27  Aligned_cols=38  Identities=26%  Similarity=0.237  Sum_probs=34.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|..
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~   68 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSH   68 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            57899999999998899999999999999999987754

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=95.59  E-value=0.0059  Score=52.89  Aligned_cols=35  Identities=26%  Similarity=0.244  Sum_probs=31.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEE-eCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV-HAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~-~~~  169 (269)
                      +||+++|.|+++-+|+++++.|+++|++|.++ .|.
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~   38 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARS   38 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence            68999999998888999999999999998886 544

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.59  E-value=0.0074  Score=55.27  Aligned_cols=86  Identities=28%  Similarity=0.362  Sum_probs=58.7

Q ss_pred             HHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC-------------------CCCHhhhcC-----
Q 024306          124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL-------------------TKNPEQITS-----  178 (269)
Q Consensus       124 ~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~-------------------t~~l~~~~~-----  178 (269)
                      +..++..++ -.|++|+|+|+|+ ||..+++++...|+ +|+++.+.                   ..++.+.++     
T Consensus       172 ~~~l~~~~~-~~g~~VlV~GaG~-vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~  249 (370)
T 4ej6_A          172 LHGVDLSGI-KAGSTVAILGGGV-IGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGL  249 (370)
T ss_dssp             HHHHHHHTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSS
T ss_pred             HHHHHhcCC-CCCCEEEEECCCH-HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhc
Confidence            444544443 3689999999966 59999999999999 78777443                   123333333     


Q ss_pred             ---CCCEEEeccCCCCcc--cCCCcCCCcEEEEeeecC
Q 024306          179 ---EADIVIAAAGVANLV--RGSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       179 ---~aDiVIsAtg~p~~i--~~~~~~~g~vViDv~~~~  211 (269)
                         .+|+||+++|.+..+  .-+.++++-.++.+|...
T Consensus       250 ~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~  287 (370)
T 4ej6_A          250 VPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLP  287 (370)
T ss_dssp             STTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCC
T ss_pred             cCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccC
Confidence               489999999965433  233577777777888654

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=95.58  E-value=0.011  Score=50.28  Aligned_cols=37  Identities=24%  Similarity=0.281  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+.+++.|+++|++|+++.|.
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~   39 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRH   39 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999999999999999999999998765

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=95.58  E-value=0.014  Score=50.51  Aligned_cols=35  Identities=17%  Similarity=0.239  Sum_probs=30.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEe
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH  167 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~  167 (269)
                      ++.+|+++|.|+++-+|+.+++.|+++|++|.++.
T Consensus        23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~   57 (267)
T 4iiu_A           23 NAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHY   57 (267)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence            46899999999988889999999999999987754

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.58  E-value=0.011  Score=51.26  Aligned_cols=52  Identities=12%  Similarity=0.066  Sum_probs=43.1

Q ss_pred             eEEEEcCCcccHHHHHHHHHhC-CCEEEEEeCCC---------------------CCHhhhcCCCCEEEeccCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRH-HATVSIVHALT---------------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~~~~t---------------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      +|+|.|++|.+|+.++..|.++ |++|+++.|..                     .++.+.++.+|+||...+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   75 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI   75 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            6999999988999999999998 88999987752                     1245678899999988874

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=95.57  E-value=0.011  Score=50.87  Aligned_cols=37  Identities=27%  Similarity=0.357  Sum_probs=33.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+.+++.|+++|++|.++.|.
T Consensus         1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   37 (255)
T 2q2v_A            1 TLKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFG   37 (255)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3679999999998888999999999999999988764

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=95.57  E-value=0.01  Score=51.84  Aligned_cols=54  Identities=13%  Similarity=0.169  Sum_probs=43.0

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCCC-------------------CHhhhcC--CCCEEEeccCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALTK-------------------NPEQITS--EADIVIAAAGV  189 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~t~-------------------~l~~~~~--~aDiVIsAtg~  189 (269)
                      +++|+|.|++|.+|+.++..|.++  |++|+++.|...                   ++.+.++  ..|+||...+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~   78 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAAL   78 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCHHHHSSCEEECCTTCHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccccccCCCceEEecCCCHHHHHHHHhhcCCCEEEECCcc
Confidence            578999999898999999999998  889998876531                   1234455  78999988774

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=95.56  E-value=0.014  Score=50.48  Aligned_cols=37  Identities=19%  Similarity=0.283  Sum_probs=33.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+.+++.|+++|++|.++.|+
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   46 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVS   46 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999889999999999999999998765

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.56  E-value=0.014  Score=50.74  Aligned_cols=37  Identities=16%  Similarity=0.205  Sum_probs=33.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+++++.|+++|++|.++.+.
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            5789999999998888999999999999999998654

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=95.56  E-value=0.012  Score=50.36  Aligned_cols=37  Identities=19%  Similarity=0.243  Sum_probs=33.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   39 (246)
T 2ag5_A            3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDIN   39 (246)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            4689999999998888999999999999999998775

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=95.54  E-value=0.017  Score=51.65  Aligned_cols=53  Identities=21%  Similarity=0.275  Sum_probs=41.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCCC-------------------------CCHhhhcCCCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALT-------------------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~t-------------------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      ++|.|||+|.+ |.+++..|+..|  .+|+++++..                         .++ +.+++||+||.+++.
T Consensus         2 ~kI~VIGaG~~-G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~   79 (309)
T 1hyh_A            2 RKIGIIGLGNV-GAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGN   79 (309)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred             CEEEEECCCHH-HHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence            47999998775 999999999988  6899986642                         122 456789999999986


Q ss_pred             CC
Q 024306          190 AN  191 (269)
Q Consensus       190 p~  191 (269)
                      |.
T Consensus        80 ~~   81 (309)
T 1hyh_A           80 IK   81 (309)
T ss_dssp             GG
T ss_pred             cc
Confidence            44

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=95.53  E-value=0.013  Score=50.90  Aligned_cols=37  Identities=19%  Similarity=0.112  Sum_probs=33.8

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~   65 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCART   65 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence            4689999999999989999999999999999998775

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=95.53  E-value=0.015  Score=50.29  Aligned_cols=37  Identities=24%  Similarity=0.416  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|++++..|+++|++|.++.|.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMN   40 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999888999999999999999998765

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=95.53  E-value=0.0078  Score=53.64  Aligned_cols=37  Identities=16%  Similarity=0.161  Sum_probs=29.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~  169 (269)
                      ..++++|+|.|++|.+|+.++..|.++|  .+|+...+.
T Consensus        21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~   59 (346)
T 4egb_A           21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDAL   59 (346)
T ss_dssp             ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred             ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecc
Confidence            3578999999999999999999999999  567766543

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=95.53  E-value=0.011  Score=51.43  Aligned_cols=35  Identities=31%  Similarity=0.226  Sum_probs=30.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      ++||.++|.|+++-+|++++..|+++|++|.++.+
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~   59 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYA   59 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEES
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcC
Confidence            57999999999888899999999999999988743

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=95.52  E-value=0.012  Score=50.59  Aligned_cols=38  Identities=21%  Similarity=0.218  Sum_probs=34.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   47 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRK   47 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999999889999999999999999998775

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=95.51  E-value=0.0032  Score=57.00  Aligned_cols=76  Identities=22%  Similarity=0.138  Sum_probs=51.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------------CCHhhh----c--CCCCEEEeccCCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------KNPEQI----T--SEADIVIAAAGVA  190 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------------~~l~~~----~--~~aDiVIsAtg~p  190 (269)
                      -.|++|+|+|++|.+|..+++++...|++|+.+ ++.                 .++.+.    +  +.+|+||+++|.+
T Consensus       149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~i~~~~~~~~~~~~~~~~~g~D~vid~~g~~  227 (343)
T 3gaz_A          149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGATPIDASREPEDYAAEHTAGQGFDLVYDTLGGP  227 (343)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEEEETTSCHHHHHHHHHTTSCEEEEEESSCTH
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCEeccCCCHHHHHHHHhcCCCceEEEECCCcH
Confidence            369999999965667999999999999998777 321                 122221    1  3589999999864


Q ss_pred             Cc-ccCCCcCCCcEEEEeeec
Q 024306          191 NL-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       191 ~~-i~~~~~~~g~vViDv~~~  210 (269)
                      .+ -.-+.++++-.++.++..
T Consensus       228 ~~~~~~~~l~~~G~iv~~g~~  248 (343)
T 3gaz_A          228 VLDASFSAVKRFGHVVSCLGW  248 (343)
T ss_dssp             HHHHHHHHEEEEEEEEESCCC
T ss_pred             HHHHHHHHHhcCCeEEEEccc
Confidence            32 123356776667666643

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=95.51  E-value=0.015  Score=50.82  Aligned_cols=38  Identities=24%  Similarity=0.218  Sum_probs=34.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+++++.|+++|++|.++.+.
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   64 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT   64 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH
Confidence            57899999999998888999999999999999988754

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=95.51  E-value=0.0089  Score=54.39  Aligned_cols=70  Identities=20%  Similarity=0.283  Sum_probs=52.5

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------------------CCHhhhcCCCCEEEeccCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      +|.|||+|.+ |.+++..|++.|.+|++++++.                            .++.+.++++|+||.+++.
T Consensus        17 kI~iIG~G~m-G~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~   95 (366)
T 1evy_A           17 KAVVFGSGAF-GTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT   95 (366)
T ss_dssp             EEEEECCSHH-HHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH
T ss_pred             eEEEECCCHH-HHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh
Confidence            7999999886 9999999999999999997652                            1234557789999999984


Q ss_pred             CC---cccC------CCcCC-CcEEEEee
Q 024306          190 AN---LVRG------SWLKP-GAVVLDVG  208 (269)
Q Consensus       190 p~---~i~~------~~~~~-g~vViDv~  208 (269)
                      ..   .+..      ..+++ +++|+|+.
T Consensus        96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~  124 (366)
T 1evy_A           96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCT  124 (366)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHTCCEEECC
T ss_pred             HHHHHHHHHhHHHHHHhcCccCCEEEEEC
Confidence            22   2221      23566 88888886

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=95.51  E-value=0.012  Score=55.55  Aligned_cols=38  Identities=13%  Similarity=0.107  Sum_probs=34.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhC---CCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRH---HATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~---ga~Vti~~~~  169 (269)
                      ...++++|+|.|++|.+|+.++..|.++   |++|+++.|.
T Consensus        69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~  109 (478)
T 4dqv_A           69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRA  109 (478)
T ss_dssp             CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECS
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence            4568999999999999999999999998   8999998874

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=95.51  E-value=0.015  Score=50.17  Aligned_cols=38  Identities=26%  Similarity=0.293  Sum_probs=34.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++++|+++|.|+++-+|+.+++.|+++|++|.++.|.
T Consensus        12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~   49 (278)
T 2bgk_A           12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIA   49 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            35789999999999889999999999999999998765

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.50  E-value=0.0099  Score=50.04  Aligned_cols=52  Identities=13%  Similarity=0.140  Sum_probs=41.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------------------CHhh-hcCCCCEEEeccCCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------------NPEQ-ITSEADIVIAAAGVA  190 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------------~l~~-~~~~aDiVIsAtg~p  190 (269)
                      +|+|+|+|.. |+.++..|.++|.+|+++.+...                      .+.+ .+.+||+||.+++..
T Consensus         2 ~iiIiG~G~~-G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   76 (218)
T 3l4b_C            2 KVIIIGGETT-AYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRD   76 (218)
T ss_dssp             CEEEECCHHH-HHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCH
T ss_pred             EEEEECCCHH-HHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCc
Confidence            6899999775 99999999999999999976521                      1222 367899999999853

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=95.50  E-value=0.038  Score=43.73  Aligned_cols=55  Identities=11%  Similarity=0.085  Sum_probs=44.5

Q ss_pred             CccceEEEEcC----CcccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCCEEEeccCC
Q 024306          134 IMGKNAVVIGR----SNIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       134 l~gk~v~ViG~----gg~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~aDiVIsAtg~  189 (269)
                      ++.++|.|||+    |.+ |++++..|.+.|.+|+..+.+.         +++.+.....|++|.+++.
T Consensus        12 ~~p~~IavIGaS~~~g~~-G~~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~vp~   79 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKY-GNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPP   79 (138)
T ss_dssp             --CCEEEEETCCSCTTSH-HHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCH
T ss_pred             cCCCeEEEEeecCCCCCH-HHHHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEEEeCH
Confidence            46789999999    665 9999999999999988888753         3566667789999999984

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=95.49  E-value=0.015  Score=50.45  Aligned_cols=38  Identities=21%  Similarity=0.210  Sum_probs=34.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|++++..|+++|++|.++.+.
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   46 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLC   46 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecc
Confidence            46899999999998888999999999999999988754

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.49  E-value=0.0094  Score=57.03  Aligned_cols=33  Identities=18%  Similarity=0.225  Sum_probs=29.6

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      -++|.|||+|.+ |.++|..|++.|.+|++++++
T Consensus         5 ~~kVgVIGaG~M-G~~IA~~la~aG~~V~l~D~~   37 (483)
T 3mog_A            5 VQTVAVIGSGTM-GAGIAEVAASHGHQVLLYDIS   37 (483)
T ss_dssp             CCCEEEECCSHH-HHHHHHHHHHTTCCEEEECSC
T ss_pred             CCEEEEECcCHH-HHHHHHHHHHCCCeEEEEECC
Confidence            368999999886 999999999999999999765

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=95.48  E-value=0.015  Score=50.73  Aligned_cols=37  Identities=19%  Similarity=0.261  Sum_probs=34.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~   60 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRS   60 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999888999999999999999998775

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=95.48  E-value=0.013  Score=49.57  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=31.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEe
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH  167 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~  167 (269)
                      ++||+++|.|+++-+|+.++..|+++|++|.++.
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~   36 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNG   36 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence            6789999999999899999999999999999883

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=95.47  E-value=0.016  Score=50.51  Aligned_cols=38  Identities=24%  Similarity=0.181  Sum_probs=34.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         5 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   42 (270)
T 1yde_A            5 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKD   42 (270)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999999889999999999999999998775

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=95.47  E-value=0.016  Score=50.61  Aligned_cols=37  Identities=19%  Similarity=0.144  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|++++..|+++|++|.++.|.
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   55 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARG   55 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999989999999999999999998775

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=95.47  E-value=0.015  Score=50.87  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=34.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        23 ~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~   59 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRK   59 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999999889999999999999999998775

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=95.46  E-value=0.012  Score=50.61  Aligned_cols=37  Identities=32%  Similarity=0.346  Sum_probs=33.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+.++..|+++|++|.++.|+
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~   39 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDIN   39 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4789999999998888999999999999999998765

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.44  E-value=0.017  Score=50.09  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=31.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      +++|.++|.|+++-+|+.+++.|+++|++|.++.+
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~   57 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHS   57 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcC
Confidence            57899999999888899999999999999988864

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=95.44  E-value=0.028  Score=51.51  Aligned_cols=76  Identities=21%  Similarity=0.275  Sum_probs=52.4

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCC---CEEEEEeCCCC----------CH------hhhcCCCCEEEeccCCC--Cccc
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHH---ATVSIVHALTK----------NP------EQITSEADIVIAAAGVA--NLVR  194 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~g---a~Vti~~~~t~----------~l------~~~~~~aDiVIsAtg~p--~~i~  194 (269)
                      |-+|.|+|+.|.+|.-+.++|.++.   .++..+.+...          ++      .+.+.++|+||.|+|.-  .-+-
T Consensus         1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~s~~~a   80 (344)
T 3tz6_A            1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETADPSGLDIALFSAGSAMSKVQA   80 (344)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTTSCCTTCSEEEECSCHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCHHHhccCCEEEECCChHHHHHHH
Confidence            4579999999999999999999874   24555543321          11      12357899999999841  1122


Q ss_pred             CCCcCCCcEEEEeeecC
Q 024306          195 GSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       195 ~~~~~~g~vViDv~~~~  211 (269)
                      +..++.|+.|||.....
T Consensus        81 ~~~~~~G~~vID~Sa~~   97 (344)
T 3tz6_A           81 PRFAAAGVTVIDNSSAW   97 (344)
T ss_dssp             HHHHHTTCEEEECSSTT
T ss_pred             HHHHhCCCEEEECCCcc
Confidence            33456799999999764

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.44  E-value=0.019  Score=51.76  Aligned_cols=75  Identities=13%  Similarity=0.080  Sum_probs=52.2

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------------CCHhhhc-----CCCCEEEeccCCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------------KNPEQIT-----SEADIVIAAAGVAN  191 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------------~~l~~~~-----~~aDiVIsAtg~p~  191 (269)
                      .|++|+|+|++|.+|..+++++...|++|+.+.++.                  .++.+.+     +..|+||+++|.+.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~~~  229 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNTDM  229 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCCchH
Confidence            699999997666679999999999999988886642                  1222222     24799999998654


Q ss_pred             ccc--CCCcCCCcEEEEeee
Q 024306          192 LVR--GSWLKPGAVVLDVGT  209 (269)
Q Consensus       192 ~i~--~~~~~~g~vViDv~~  209 (269)
                      .+.  -+.++++-.++.++.
T Consensus       230 ~~~~~~~~l~~~G~iv~~~~  249 (346)
T 3fbg_A          230 YYDDMIQLVKPRGHIATIVA  249 (346)
T ss_dssp             HHHHHHHHEEEEEEEEESSC
T ss_pred             HHHHHHHHhccCCEEEEECC
Confidence            322  245677666666653

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=95.43  E-value=0.016  Score=50.87  Aligned_cols=37  Identities=22%  Similarity=0.200  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++||+++|.|+++-+|+.++..|+++|++|+++.|+
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~   51 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRK   51 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5789999999999999999999999999999998765

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.42  E-value=0.021  Score=51.53  Aligned_cols=71  Identities=17%  Similarity=0.238  Sum_probs=52.3

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------------CCHhhhcCCCCEEEeccCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      ..+|+|||+|.+ |.+++..|++.|.+|+++.|..                          .+..+ +..+|+||.+++.
T Consensus         3 ~mkI~IiGaG~~-G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~   80 (335)
T 3ghy_A            3 LTRICIVGAGAV-GGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA   80 (335)
T ss_dssp             CCCEEEESCCHH-HHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH
T ss_pred             CCEEEEECcCHH-HHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc
Confidence            368999999876 9999999999999999997631                          12333 5789999999985


Q ss_pred             CCc---cc--CCCcCCCcEEEEee
Q 024306          190 ANL---VR--GSWLKPGAVVLDVG  208 (269)
Q Consensus       190 p~~---i~--~~~~~~g~vViDv~  208 (269)
                      +..   +.  ...++++++|+.+.
T Consensus        81 ~~~~~~~~~l~~~l~~~~~iv~~~  104 (335)
T 3ghy_A           81 PALESVAAGIAPLIGPGTCVVVAM  104 (335)
T ss_dssp             HHHHHHHGGGSSSCCTTCEEEECC
T ss_pred             hhHHHHHHHHHhhCCCCCEEEEEC
Confidence            321   11  23467788888765

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.41  E-value=0.026  Score=50.59  Aligned_cols=51  Identities=29%  Similarity=0.486  Sum_probs=39.6

Q ss_pred             eEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCC--------------------------CCHhhhcCCCCEEEeccCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALT--------------------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~t--------------------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      +|.|||+|. +|.+++..|+..  +.+|+++.+..                          .++.+ +++||+||.++|.
T Consensus         2 kI~VIGaG~-vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            2 KITVIGAGN-VGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             EEEEECCCH-HHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            699999966 599999999885  67899986542                          12333 7889999999986


Q ss_pred             C
Q 024306          190 A  190 (269)
Q Consensus       190 p  190 (269)
                      |
T Consensus        80 p   80 (310)
T 1guz_A           80 P   80 (310)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=95.41  E-value=0.014  Score=49.67  Aligned_cols=37  Identities=27%  Similarity=0.223  Sum_probs=33.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+.+++.|+++|++|.++.|.
T Consensus         2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~   38 (247)
T 3lyl_A            2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATS   38 (247)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence            4689999999998888999999999999999988765

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.40  E-value=0.011  Score=53.72  Aligned_cols=74  Identities=18%  Similarity=0.217  Sum_probs=53.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---CCHh----------------hhc----CCCCEEEeccCCCCc
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---KNPE----------------QIT----SEADIVIAAAGVANL  192 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---~~l~----------------~~~----~~aDiVIsAtg~p~~  192 (269)
                      |++|+|+|+|+ +|..+++++..+|++|+++.+..   ..++                +.+    ..+|+||+++|.+..
T Consensus       181 g~~VlV~GaG~-vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  259 (366)
T 2cdc_A          181 CRKVLVVGTGP-IGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGADVN  259 (366)
T ss_dssp             TCEEEEESCHH-HHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCCTH
T ss_pred             CCEEEEECCCH-HHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCChHH
Confidence            99999999955 69999999999999998887754   2211                011    247999999997644


Q ss_pred             c-c--CCCcCCCcEEEEeeec
Q 024306          193 V-R--GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       193 i-~--~~~~~~g~vViDv~~~  210 (269)
                      + .  .+.++++-.++.++..
T Consensus       260 ~~~~~~~~l~~~G~iv~~g~~  280 (366)
T 2cdc_A          260 ILGNVIPLLGRNGVLGLFGFS  280 (366)
T ss_dssp             HHHHHGGGEEEEEEEEECSCC
T ss_pred             HHHHHHHHHhcCCEEEEEecC
Confidence            3 2  3456777777777754

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.40  E-value=0.021  Score=51.67  Aligned_cols=55  Identities=29%  Similarity=0.404  Sum_probs=44.0

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC--C-------------------------CCHhhhcCCCCEEEec
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL--T-------------------------KNPEQITSEADIVIAA  186 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~--t-------------------------~~l~~~~~~aDiVIsA  186 (269)
                      +.++|.|||+|.+ |.+++..|+..|. +|+++.+.  .                         .+-.+.+++||+||.+
T Consensus         7 ~~~kv~ViGaG~v-G~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIia   85 (315)
T 3tl2_A            7 KRKKVSVIGAGFT-GATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVIT   85 (315)
T ss_dssp             CCCEEEEECCSHH-HHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEEC
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEe
Confidence            4678999999765 9999999999998 89998765  1                         0113678999999999


Q ss_pred             cCCC
Q 024306          187 AGVA  190 (269)
Q Consensus       187 tg~p  190 (269)
                      +|.|
T Consensus        86 ag~p   89 (315)
T 3tl2_A           86 AGIA   89 (315)
T ss_dssp             CSCC
T ss_pred             CCCC
Confidence            9864

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.40  E-value=0.017  Score=52.68  Aligned_cols=54  Identities=19%  Similarity=0.372  Sum_probs=42.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-------------------------CCHhhhcCCCCEEEecc
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-------------------------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-------------------------~~l~~~~~~aDiVIsAt  187 (269)
                      ..++|.|||+|. ||.+++..|+..|.  +|.+++...                         .++. .+++||+||.+.
T Consensus        20 ~~~kV~ViGaG~-vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~-~~~daDiVIita   97 (330)
T 3ldh_A           20 SYNKITVVGCDA-VGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS-VSAGSKLVVITA   97 (330)
T ss_dssp             CCCEEEEESTTH-HHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC-SCSSCSEEEECC
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH-HhCCCCEEEEeC
Confidence            457899999966 59999999998885  788885431                         2333 389999999998


Q ss_pred             CCC
Q 024306          188 GVA  190 (269)
Q Consensus       188 g~p  190 (269)
                      |.|
T Consensus        98 G~p  100 (330)
T 3ldh_A           98 GAR  100 (330)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            865

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=95.40  E-value=0.01  Score=51.60  Aligned_cols=51  Identities=16%  Similarity=0.263  Sum_probs=41.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----C------CHhhhcCC--CCEEEeccCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----K------NPEQITSE--ADIVIAAAGV  189 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----~------~l~~~~~~--aDiVIsAtg~  189 (269)
                      +|+|.|++|.+|+.++..|. +|++|+++.|..    -      ++.+.+++  .|+||...+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEEEeccccccccccCCCHHHHHHHHHhcCCCEEEECccc
Confidence            69999999989999999999 899999998763    1      23455554  8999988874

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=95.39  E-value=0.011  Score=50.55  Aligned_cols=35  Identities=17%  Similarity=0.136  Sum_probs=31.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~   36 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRR   36 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            57899999998888999999999999999999876

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=95.38  E-value=0.013  Score=50.72  Aligned_cols=38  Identities=26%  Similarity=0.289  Sum_probs=34.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~   43 (267)
T 3t4x_A            6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRR   43 (267)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            45789999999998888999999999999999998765

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=95.37  E-value=0.012  Score=51.77  Aligned_cols=39  Identities=23%  Similarity=0.112  Sum_probs=30.9

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..+++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus        28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~   66 (281)
T 4dry_A           28 KGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRR   66 (281)
T ss_dssp             ------CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            356899999999998888999999999999999998775

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=95.37  E-value=0.013  Score=50.42  Aligned_cols=37  Identities=27%  Similarity=0.290  Sum_probs=33.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      ++||+++|.|+++-+|+++++.|+++|++|.++.|+.
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   38 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            6789999999988889999999999999999987653

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=95.37  E-value=0.019  Score=48.89  Aligned_cols=37  Identities=11%  Similarity=0.122  Sum_probs=33.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .++|+++|.|+++-+|+.+++.|+++|++|.++.|+.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~   41 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   41 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCh
Confidence            4789999999998899999999999999999988763

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=95.37  E-value=0.015  Score=51.45  Aligned_cols=55  Identities=16%  Similarity=0.172  Sum_probs=41.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCCCC---------------------C------HhhhcCCCCEEEe
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALTK---------------------N------PEQITSEADIVIA  185 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~t~---------------------~------l~~~~~~aDiVIs  185 (269)
                      ++++|+|.|++|.+|+.++..|.++|  ++|+++.|...                     +      +.+.+...|+||.
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   81 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVH   81 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEE
Confidence            35789999998889999999999986  78988865320                     1      2234467899998


Q ss_pred             ccCC
Q 024306          186 AAGV  189 (269)
Q Consensus       186 Atg~  189 (269)
                      ..+.
T Consensus        82 ~A~~   85 (336)
T 2hun_A           82 LAAE   85 (336)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8774

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=95.37  E-value=0.014  Score=50.19  Aligned_cols=38  Identities=13%  Similarity=0.106  Sum_probs=34.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++++|+++|.|+++-+|+.+++.|+++|++|+++.|.
T Consensus        10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~   47 (266)
T 1xq1_A           10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN   47 (266)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35789999999999889999999999999999998775

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=95.36  E-value=0.015  Score=49.79  Aligned_cols=37  Identities=22%  Similarity=0.339  Sum_probs=33.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~  169 (269)
                      +++||+++|.|+++-+|+.++..|+++|++ |.++.|.
T Consensus         2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~   39 (254)
T 1sby_A            2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRV   39 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecC
Confidence            468999999999888899999999999996 8888765

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=95.36  E-value=0.017  Score=49.79  Aligned_cols=36  Identities=28%  Similarity=0.260  Sum_probs=33.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++||+++|.|+++-+|++++..|+++|++|.++.|+
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~   40 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWN   40 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECC
Confidence            678999999999889999999999999999998765

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.35  E-value=0.017  Score=50.33  Aligned_cols=37  Identities=16%  Similarity=0.201  Sum_probs=34.0

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      .+++||.++|.|+++-+|+++++.|+++|++|.++.+
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r   47 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDI   47 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEec
Confidence            4689999999999888899999999999999999876

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.34  E-value=0.012  Score=50.72  Aligned_cols=52  Identities=6%  Similarity=0.035  Sum_probs=40.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCCCC---------------------CHhhhcCCCCEEEeccCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRH--HATVSIVHALTK---------------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~t~---------------------~l~~~~~~aDiVIsAtg~  189 (269)
                      +|+|.|++|.+|+.++..|.++  |++|+++.|...                     ++.+.++.+|+||..++.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   75 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSS   75 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            4899999888999999999998  889998876531                     134567788999987763

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=95.34  E-value=0.021  Score=51.63  Aligned_cols=56  Identities=20%  Similarity=0.445  Sum_probs=42.7

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCCC-----------------------CCHhhhcCCCCEEEeccCCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALT-----------------------KNPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~t-----------------------~~l~~~~~~aDiVIsAtg~p  190 (269)
                      ..+|+|+|++|.||.+++..|+.+|  .+|+++....                       .++.+.+++||+||.++|.|
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~~   87 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP   87 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCcC
Confidence            3589999976667999999999888  5788876321                       12345689999999999865


Q ss_pred             C
Q 024306          191 N  191 (269)
Q Consensus       191 ~  191 (269)
                      .
T Consensus        88 ~   88 (326)
T 1smk_A           88 R   88 (326)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=95.33  E-value=0.03  Score=52.92  Aligned_cols=53  Identities=19%  Similarity=0.276  Sum_probs=44.0

Q ss_pred             cccCCHHHHHHH----HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE-EEeC
Q 024306          115 FIPCTPKGCIEL----LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVHA  168 (269)
Q Consensus       115 ~~p~t~~g~~~~----l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt-i~~~  168 (269)
                      ..+.|++|++..    +++.+.+++|++|+|.|.|.+ |..+++.|.++|++|. ++.+
T Consensus       210 r~~aTg~Gv~~~~~~~~~~~g~~l~g~~vaVqGfGnV-G~~~a~~L~e~GakvVavsD~  267 (440)
T 3aog_A          210 RRDATGRGVFITAAAAAEKIGLQVEGARVAIQGFGNV-GNAAARAFHDHGARVVAVQDH  267 (440)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHTCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEECS
T ss_pred             CCcchHHHHHHHHHHHHHhcCCCccCCEEEEeccCHH-HHHHHHHHHHCCCEEEEEEcC
Confidence            346798987655    456789999999999999885 9999999999999965 7765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1a4ia1	170	c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehy	8e-54
d1b0aa1	166	c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehy	1e-49
d1edza2	146	c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/	1e-36
d1edza1	171	c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehy	3e-36
d1a4ia2	125	c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/	2e-24
d1b0aa2	121	c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/	4e-24

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  170 bits (431), Expect = 8e-54
 Identities = 82/167 (49%), Positives = 113/167 (67%)

Query: 98  FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ 157
              +N G LA       FIPCTPKGC+EL+  +GV I G++AVV+GRS IVG P   LL 
Sbjct: 1   LTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLL 60

Query: 158 RHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSC 217
            ++ATV+  H+ T + ++  ++ DI++ A G   +V+G W+KPGA+V+D G   V D   
Sbjct: 61  WNNATVTTCHSKTAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKK 120

Query: 218 EYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKR 264
             G +++GDV Y+EA   AS ITPVPGGVGPMTVAML+ +T++SAKR
Sbjct: 121 PNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKR 167

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

 Score =  159 bits (403), Expect = 1e-49
 Identities = 75/169 (44%), Positives = 101/169 (59%), Gaps = 8/169 (4%)

Query: 98  FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQ 157
           FHP N+G L  R   P   PCTP+G + LL R  ++  G NAVVIG SNIVG P S+ L 
Sbjct: 1   FHPYNVGRLCQR--APRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELL 58

Query: 158 RHHATVSIVHALTKNPEQITSEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSC 217
               T ++ H  TKN       AD++I A G    + G W+K GA+V+DVG   +++   
Sbjct: 59  LAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENG-- 116

Query: 218 EYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDSAKRAY 266
               +++GDV +E+A + AS ITPVPGGVGPMTVA L+ NTL +    +
Sbjct: 117 ----KVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYH 161

>d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 146

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  125 bits (314), Expect = 1e-36
 Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 5/123 (4%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
           K   G+ P L   L      ++ Y     K  E +G +  +        +D +  A+   
Sbjct: 28  KTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVI---EDKDFLEEAIIQA 84

Query: 62  NQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPK 121
           N D S+NGI+V  P+  +  +  +   V  EKDV+G + +   NL               
Sbjct: 85  NGDDSVNGIMVYFPVFGNAQDQYLQQVVCKEKDVEGLNHVYYQNLYH--NVRYLDKENRL 142

Query: 122 GCI 124
             I
Sbjct: 143 KSI 145

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  124 bits (313), Expect = 3e-36
 Identities = 42/183 (22%), Positives = 65/183 (35%), Gaps = 53/183 (28%)

Query: 117 PCTPKGCIELL---------IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH 167
           PCTP   +++L         +  G  + GK  +VI RS IVG P + LL    ATV  V 
Sbjct: 1   PCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVD 60

Query: 168 ALTKN-------------------------PEQITSEADIVIAAAGVAN-LVRGSWLKPG 201
                                          ++ + ++D+VI      N      ++K G
Sbjct: 61  VNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEG 120

Query: 202 AVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSNTLDS 261
           AV ++                       ++    AS+  P+ G V   T+AMLL N L  
Sbjct: 121 AVCINFACT---------------KNFSDDVKEKASLYVPMTGKV---TIAMLLRNMLRL 162

Query: 262 AKR 264
            + 
Sbjct: 163 VRN 165

>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.8 bits (230), Expect = 2e-24
 Identities = 39/98 (39%), Positives = 64/98 (65%), Gaps = 2/98 (2%)

Query: 2   KKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNY 61
           ++  G  P LA++ VG R DS  Y+  K+KA EE+GIK+   +     TE EV+  +++ 
Sbjct: 28  EQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSL 87

Query: 62  NQDSSINGILVQLPLPQH--LDEGKILDAVSLEKDVDG 97
           N+DS+++G LVQLPL     ++  ++++A++ EKDVDG
Sbjct: 88  NEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDG 125

>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

 Score = 92.0 bits (228), Expect = 4e-24
 Identities = 44/97 (45%), Positives = 61/97 (62%)

Query: 1   MKKSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSN 60
              +  + PGLAV+LVG    SQ YV +K KACEEVG  S   +  +  +E E+L  +  
Sbjct: 25  RIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDT 84

Query: 61  YNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG 97
            N D++I+GILVQLPLP  +D  K+L+ +  +KDVDG
Sbjct: 85  LNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDG 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	100.0
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	100.0
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	100.0
d1edza2	146	Tetrahydrofolate dehydrogenase/cyclohydrolase {Bak	99.97
d1b0aa2	121	Tetrahydrofolate dehydrogenase/cyclohydrolase {Esc	99.94
d1a4ia2	125	Tetrahydrofolate dehydrogenase/cyclohydrolase {Hum	99.94
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	99.86
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	99.84
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	99.83
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	99.82
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	99.8
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	99.4
d1vi2a2	102	Putative shikimate dehydrogenase YdiB {Escherichia	99.09
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.06
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.03
d1p77a2	101	Shikimate 5-dehydrogenase AroE {Haemophilus influe	98.97
d1nvta2	110	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	98.96
d1nyta2	101	Shikimate 5-dehydrogenase AroE {Escherichia coli [	98.95
d1npya2	102	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	98.91
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.84
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.78
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.54
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	98.31
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.21
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	98.17
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	98.11
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.07
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	98.01
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	98.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	98.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	97.94
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	97.89
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.87
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.79
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.77
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.67
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.65
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.61
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.57
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.55
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.36
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.27
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.24
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.23
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.23
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.21
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.2
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.2
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.15
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.14
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.14
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.14
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.13
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.08
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.08
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.08
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.05
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.04
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.03
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.02
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.01
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.0
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.0
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.0
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	96.99
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.99
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.96
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.93
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.92
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.92
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.9
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.88
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.87
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	96.87
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.86
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.86
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.86
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.85
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.85
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	96.85
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.82
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.81
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.81
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.81
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	96.79
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.79
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.79
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.78
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.77
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.75
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.75
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.75
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.73
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.73
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.72
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.72
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.72
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	96.71
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.71
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.7
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.7
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.7
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	96.69
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.69
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.69
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.68
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.68
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	96.67
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.66
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.65
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.64
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.64
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.64
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.63
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.61
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.6
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.59
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.57
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.55
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.52
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.51
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	96.5
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.5
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.5
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.47
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.45
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.45
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	96.45
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.43
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	96.43
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.42
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.38
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	96.38
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.37
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	96.37
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.35
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.34
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.33
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	96.32
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	96.31
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.3
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.28
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	96.27
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	96.24
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.23
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.23
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.23
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.2
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	96.17
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	96.14
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.14
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	96.13
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.12
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.11
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	96.1
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	96.1
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.02
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	96.01
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.0
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	95.94
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.94
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.9
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	95.9
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.89
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	95.84
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.83
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.82
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.76
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.75
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.75
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	95.72
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	95.7
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	95.69
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.68
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	95.63
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	95.61
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	95.61
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.57
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	95.5
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.49
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.44
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.42
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	95.39
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.38
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	95.37
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	95.35
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	95.34
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.34
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.32
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.32
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.3
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.21
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.16
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.12
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	95.11
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.11
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	95.04
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.04
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	94.96
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	94.92
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	94.91
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	94.86
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.83
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	94.8
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.79
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.76
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	94.76
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.75
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	94.71
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	94.7
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	94.69
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.69
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.67
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.65
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.59
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.59
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.58
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.57
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.55
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.54
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	94.5
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	94.49
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.47
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	94.4
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	94.38
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.36
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	94.35
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.32
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.31
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	94.27
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	94.25
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	94.13
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.09
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.04
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	93.98
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	93.88
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.84
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	93.68
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	93.64
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	93.63
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.62
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.61
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	93.58
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	93.58
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	93.56
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.56
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.48
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.46
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.43
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.39
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	93.37
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	93.26
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	93.24
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.2
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	93.19
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.18
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	92.98
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	92.94
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	92.9
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	92.87
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	92.8
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	92.8
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	92.61
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	92.55
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	92.49
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	92.44
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	92.41
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	92.38
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	92.35
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	92.32
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.3
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.23
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	92.2
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	92.17
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	92.17
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	92.11
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	92.11
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	92.06
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.75
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	91.73
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	91.68
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	91.63
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	91.47
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	91.34
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	91.29
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.13
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	91.06
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	90.92
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	90.89
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	90.88
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	90.87
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	90.75
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	90.75
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	90.43
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	90.11
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	90.02
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	89.95
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	89.87
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	89.82
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	89.7
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	89.69
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	89.69
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	89.58
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	89.46
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	89.24
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.07
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	88.88
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	88.75
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	88.63
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.53
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	88.27
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.21
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	88.18
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	87.95
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	87.95
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	87.91
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.75
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	87.59
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	87.56
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	87.23
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	87.22
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	86.64
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	86.49
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	86.2
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	86.11
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	86.05
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	85.97
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	85.72
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	85.62
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	85.44
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	85.13
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	85.09
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	84.85
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	84.58
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	84.41
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	84.33
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	84.31
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	84.07
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	83.87
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	83.64
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	83.61
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	83.6
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	83.43
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	83.19
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	82.75
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	82.16
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	82.03
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	81.52
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.45
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	81.17
d1vmea1	148	ROO-like flavoprotein TM0755, C-terminal domain {T	81.13
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	80.97
d1dbqa_	282	Purine repressor (PurR), C-terminal domain {Escher	80.87
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	80.83

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-51  Score=340.36  Aligned_cols=163  Identities=46%  Similarity=0.781  Sum_probs=156.5

Q ss_pred             cccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhhc
Q 024306           98 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQIT  177 (269)
Q Consensus        98 ~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~  177 (269)
                      ||++|.|+|..+  .+.|+||||.|++++|++|+++++||+|+|||+|..||+|++.+|.++||+|++||++|+++.+.+
T Consensus         1 fhp~N~G~l~~~--~~~~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~~~   78 (166)
T d1b0aa1           1 FHPYNVGRLCQR--APRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHV   78 (166)
T ss_dssp             CSHHHHHHHHTT--CCSSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHHH
T ss_pred             CCchhHHHHhCC--CCCCCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHHHH
Confidence            689999999976  678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHH
Q 024306          178 SEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSN  257 (269)
Q Consensus       178 ~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n  257 (269)
                      ++|||||+|+|+|++++++|+|+|++|||+|+++.++      ++++||+||+++.++++++|||||||||||++|||+|
T Consensus        79 ~~ADivI~a~G~p~~i~~~~vk~g~vvIDvGi~~~~~------~~~~Gdvd~~~v~~~a~~~TPvPGGVGP~Tva~L~~N  152 (166)
T d1b0aa1          79 ENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLEN------GKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIEN  152 (166)
T ss_dssp             HHCSEEEECSCCTTCBCTTTSCTTCEEEECCCEECTT------SCEECSBCHHHHHHHCSEECCSSSSSHHHHHHHHHHH
T ss_pred             hhhhHhhhhccCcccccccccCCCcEEEecCceecCC------CCEEeccccHhHHhheeEeCCCCCcccHHHHHHHHHH
Confidence            9999999999999999999999999999999998755      2899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 024306          258 TLDSAKRAYGF  268 (269)
Q Consensus       258 ~v~a~~~~~~~  268 (269)
                      +++++++|.+.
T Consensus       153 ~v~a~~~~~~~  163 (166)
T d1b0aa1         153 TLQACVEYHDP  163 (166)
T ss_dssp             HHHHHHHTTSC
T ss_pred             HHHHHHHHhCc
Confidence            99999999763

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-51  Score=342.02  Aligned_cols=170  Identities=48%  Similarity=0.815  Sum_probs=155.3

Q ss_pred             cccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhhc
Q 024306           98 FHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQIT  177 (269)
Q Consensus        98 ~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~  177 (269)
                      +|++|.|+|..|...+.|+||||.|++++|++|+++++||+|+|||+|..||||++.+|+++||+|++||++|+++.+.+
T Consensus         1 l~~~N~G~l~~g~~~~~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~~~~   80 (170)
T d1a4ia1           1 LTSINAGRLARGDLNDCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDEEV   80 (170)
T ss_dssp             CSHHHHHHHHTTCCSSCCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHHHH
T ss_pred             CCccchhhHhcCCCCCCCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHHHHH
Confidence            58899999998865789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEeccCCCCcccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHHHH
Q 024306          178 SEADIVIAAAGVANLVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLLSN  257 (269)
Q Consensus       178 ~~aDiVIsAtg~p~~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl~n  257 (269)
                      ++|||+|+|+|.|++++++|+++|++|||+|+++.+++..+.+++++||+||+++.++++++|||||||||||++|||+|
T Consensus        81 ~~aDivi~a~G~~~~i~~~~vk~g~iviDvgi~~~~~~~~~~~~~~~gdvd~~~v~~~a~~~TPvPGGVGp~Tva~L~~N  160 (170)
T d1a4ia1          81 NKGDILVVATGQPEMVKGEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQS  160 (170)
T ss_dssp             TTCSEEEECCCCTTCBCGGGSCTTCEEEECCCBC----------CCBCSBCHHHHTTTCSEECCSSSSHHHHHHHHHHHH
T ss_pred             hhccchhhccccccccccccccCCCeEeccCcccccccccCCCCEEecccchHhhhhhceEeCCCCCchhHHHHHHHHHH
Confidence            99999999999999999999999999999999988665444556899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 024306          258 TLDSAKRAYG  267 (269)
Q Consensus       258 ~v~a~~~~~~  267 (269)
                      +++++|+|+.
T Consensus       161 ~v~a~~r~l~  170 (170)
T d1a4ia1         161 TVESAKRFLE  170 (170)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhhC
Confidence            9999999973

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.6e-37  Score=256.99  Aligned_cols=132  Identities=31%  Similarity=0.456  Sum_probs=119.9

Q ss_pred             cCCHHHHHHHHHHhCC---------CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------------
Q 024306          117 PCTPKGCIELLIRSGV---------EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------  171 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~---------~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------  171 (269)
                      ||||.|++++|++|++         +++||+|+|||+|..||+|++.+|+++||+|++||+++.                
T Consensus         1 PcTp~gv~~LL~~y~I~~~~~~~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1edza1           1 PCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHV   80 (171)
T ss_dssp             CHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEE
T ss_pred             CCcHHHHHHHHHHcCcccccccccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeecc
Confidence            9999999999999988         899999999999999999999999999999999987642                


Q ss_pred             ---------CHhhhcCCCCEEEeccCCCCc-ccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecc
Q 024306          172 ---------NPEQITSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITP  241 (269)
Q Consensus       172 ---------~l~~~~~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tp  241 (269)
                               .+++.+++|||||+|+|.|++ ++.||+++|++|||+|+++...               +++.++++++||
T Consensus        81 ~~~~~~~~~~lk~~~~~aDIvIsavG~p~~~i~~d~ik~GavvIDvGi~~~~~---------------~~v~~~a~~iTP  145 (171)
T d1edza1          81 EDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNFS---------------DDVKEKASLYVP  145 (171)
T ss_dssp             EEEEECCHHHHHHHHHHCSEEEECCCCTTCCBCTTTSCTTEEEEECSSSCCBC---------------GGGGTTEEEEES
T ss_pred             ccccccchhHHhhccccCCEEEEccCCCccccChhhcccCceEeecccccccc---------------cchhheeeEEcC
Confidence                     156777899999999999998 9999999999999999875322               466889999999


Q ss_pred             cCCcccHHHHHHHHHHHHHHHHHHh
Q 024306          242 VPGGVGPMTVAMLLSNTLDSAKRAY  266 (269)
Q Consensus       242 vpgGvGp~T~~mLl~n~v~a~~~~~  266 (269)
                      |||||   |++|||+|+++++|+|-
T Consensus       146 VPGGV---TvamLl~N~v~a~~~~~  167 (171)
T d1edza1         146 MTGKV---TIAMLLRNMLRLVRNVE  167 (171)
T ss_dssp             CCHHH---HHHHHHHHHHHHHHHHH
T ss_pred             CCCHH---HHHHHHHHHHHHHHHHH
Confidence            99997   99999999999999874

>d1edza2 c.58.1.2 (A:3-148) Tetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8e-33  Score=224.50  Aligned_cols=114  Identities=23%  Similarity=0.269  Sum_probs=106.4

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHH
Q 024306            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (269)
Q Consensus         5 ~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~   84 (269)
                      .|++|+|++|+||+||+|.+|+++|.++|+++||+++...+   .+++++++.|++||+|++||||+||+|||+|+++.+
T Consensus        31 ~g~~P~Lavilvg~d~aS~~Yv~~k~k~a~~~Gi~~~l~~~---~~~~~l~~~I~~LN~D~~V~GIlvQlPLP~~i~~~~  107 (146)
T d1edza2          31 NGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVI---EDKDFLEEAIIQANGDDSVNGIMVYFPVFGNAQDQY  107 (146)
T ss_dssp             TTCCCEEEEEECCCCHHHHHHHHHHHHHHHHHTCEEEEEEC---SSGGGHHHHHHHHHHCTTCCEEEECSCSSSSHHHHH
T ss_pred             CCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCccccCcc---chHHHHHHHHHHHhcchhhhhhhhcCCCCcccCHHH
Confidence            47899999999999999999999999999999999875554   458899999999999999999999999999999999


Q ss_pred             HHhcCCccccccccccceecccccCCCCCccccCCHHHH
Q 024306           85 ILDAVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGC  123 (269)
Q Consensus        85 i~~~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~  123 (269)
                      +++.|+|.|||||+|+.|.|+|+.|  ..++.||||.++
T Consensus       108 i~~~I~p~KDVDGl~p~N~G~L~~~--~~~l~P~t~~~~  144 (146)
T d1edza2         108 LQQVVCKEKDVEGLNHVYYQNLYHN--VRYLDKENRLKS  144 (146)
T ss_dssp             HTTTSCTTTBTTCCSHHHHHHHHTT--CCBSSSSSCSBC
T ss_pred             HHHhcCCCCCcCCCChHhHHHHHcC--CCCCCCCCccCc
Confidence            9999999999999999999999965  778899999875

>d1b0aa2 c.58.1.2 (A:2-122) Tetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.3e-27  Score=188.44  Aligned_cols=95  Identities=46%  Similarity=0.732  Sum_probs=92.1

Q ss_pred             CCCCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCH
Q 024306            3 KSIGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDE   82 (269)
Q Consensus         3 ~~~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~   82 (269)
                      ++.+.+|+|++|+||+||+|.+|+++|.|+|+++||+++.+.||.++++++|++.|++||+|++||||+||+|||+|+++
T Consensus        27 ~~~~~~P~LavI~vg~d~aS~~Yv~~k~k~a~~lGi~~~~~~l~~~~t~~~l~~~I~~lN~d~~v~GIlvqlPLP~~i~~  106 (121)
T d1b0aa2          27 AAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDN  106 (121)
T ss_dssp             HTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCH
T ss_pred             HcCCCCceEEEEEeCCChhHHHHHHHHHHHHHhhccceeeeeccccccHHHHHHHHHHHhCCCchhhhhhcCCCCCCcCH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCccccccc
Q 024306           83 GKILDAVSLEKDVDG   97 (269)
Q Consensus        83 ~~i~~~i~p~kdvdg   97 (269)
                      ..++++|+|.|||||
T Consensus       107 ~~i~~~I~p~KDVDG  121 (121)
T d1b0aa2         107 VKVLERIHPDKDVDG  121 (121)
T ss_dssp             HHHHTTSCTTTCTTC
T ss_pred             HHHHhccCcCcCCCC
Confidence            999999999999998

>d1a4ia2 c.58.1.2 (A:2-126) Tetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Tetrahydrofolate dehydrogenase/cyclohydrolase
domain: Tetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5e-27  Score=186.14  Aligned_cols=93  Identities=42%  Similarity=0.716  Sum_probs=90.7

Q ss_pred             CCCCCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCC--CCH
Q 024306            5 IGKVPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQH--LDE   82 (269)
Q Consensus         5 ~~~~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~--~~~   82 (269)
                      .|++|+|++|+||+||+|.+|+++|.|+|+++||+++.+.||++++++++++.|++||+|++||||+||+|||.+  +++
T Consensus        31 ~g~~P~LavIlvg~d~aS~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~  110 (125)
T d1a4ia2          31 PGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINT  110 (125)
T ss_dssp             TTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCH
T ss_pred             CCCCceEEEEEcCCChhHHHHHHHHHHHHHhccceEEEEecCcchhHHHHHHHHHHHhccCCcceEEEecCCCCCCCcCH
Confidence            478999999999999999999999999999999999999999999999999999999999999999999999986  999


Q ss_pred             HHHHhcCCccccccc
Q 024306           83 GKILDAVSLEKDVDG   97 (269)
Q Consensus        83 ~~i~~~i~p~kdvdg   97 (269)
                      .+++++|+|.|||||
T Consensus       111 ~~i~~~I~p~KDVDG  125 (125)
T d1a4ia2         111 EEVINAIAPEKDVDG  125 (125)
T ss_dssp             HHHHHTSCGGGBTTC
T ss_pred             HHHHhcCCCCcCCCC
Confidence            999999999999998

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.1e-21  Score=162.33  Aligned_cols=131  Identities=18%  Similarity=0.151  Sum_probs=107.7

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------CH-hhhcCC
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------NP-EQITSE  179 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------~l-~~~~~~  179 (269)
                      |..|+++.|++.+++++||+|+|+|+||+ +|+++..|.+.|++|+|++|+..                  .+ .....+
T Consensus         1 Dg~Gf~~~l~~~~~~~~~k~vlIlGaGGa-arai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T d1nyta1           1 DGVGLLSDLERLSFIRPGLRILLIGAGGA-SRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHE   79 (170)
T ss_dssp             HHHHHHHHHHHHTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCC
T ss_pred             CHhHHHHHHHHcCCCCCCCEEEEECCcHH-HHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccc
Confidence            35899999999999999999999999998 99999999999999999999731                  11 112456


Q ss_pred             CCEEEeccCC---CC--cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHH
Q 024306          180 ADIVIAAAGV---AN--LVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAML  254 (269)
Q Consensus       180 aDiVIsAtg~---p~--~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mL  254 (269)
                      +|+|||+|+.   ++  .++.+.++++.+|+|+.|+|.+|       +|+      ..++..|+.+ +.+|.     .||
T Consensus        80 ~dliIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~vY~P~~T-------~ll------~~A~~~G~~~-~i~Gl-----~ML  140 (170)
T d1nyta1          80 FDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKGKT-------PFL------AWCEQRGSKR-NADGL-----GML  140 (170)
T ss_dssp             CSEEEECCSCGGGTCCCCCCGGGCCTTCEEEESCCCSSCC-------HHH------HHHHHTTCCE-EECTH-----HHH
T ss_pred             cceeecccccCcccCCCCCcHHHhccCcEEEEeecCCCCC-------HHH------HHHHHcCCCc-ccCCH-----HHH
Confidence            8999999973   22  35667789999999999999988       677      4477777632 35677     599


Q ss_pred             HHHHHHHHHHHhCCC
Q 024306          255 LSNTLDSAKRAYGFT  269 (269)
Q Consensus       255 l~n~v~a~~~~~~~~  269 (269)
                      ++|++.+|++|||.+
T Consensus       141 i~Qa~~~f~lwtG~~  155 (170)
T d1nyta1         141 VAQAAHAFLLWHGVL  155 (170)
T ss_dssp             HHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHhCCC
Confidence            999999999999964

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=5.9e-21  Score=159.42  Aligned_cols=130  Identities=21%  Similarity=0.225  Sum_probs=107.7

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCCCH------------------------
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTKNP------------------------  173 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~~l------------------------  173 (269)
                      |..|+++.|++.++++++|+|+|+|+||+ ||+++..|.+.|+ ++++++|+...+                        
T Consensus         1 D~~Gf~~~l~~~~~~l~~k~vlIlGaGGa-arai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   79 (182)
T d1vi2a1           1 DGTGHIRAIKESGFDIKGKTMVLLGAGGA-STAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLA   79 (182)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETT
T ss_pred             CHHHHHHHHHHcCCCcCCCEEEEECCcHH-HHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecc
Confidence            35899999999999999999999999998 9999999999998 699999974322                        


Q ss_pred             -----hhhcCCCCEEEeccCC---CC-----cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceec
Q 024306          174 -----EQITSEADIVIAAAGV---AN-----LVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVIT  240 (269)
Q Consensus       174 -----~~~~~~aDiVIsAtg~---p~-----~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~t  240 (269)
                           .+.+..+|+|||+|+.   +.     +.+.+.++++.+|+|+.|+|.+|       +|+      ..+++.++  
T Consensus        80 ~~~~~~~~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p~~T-------~ll------~~a~~~g~--  144 (182)
T d1vi2a1          80 DQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMT-------KLL------QQAQQAGC--  144 (182)
T ss_dssp             CHHHHHHHHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCSSSSC-------HHH------HHHHTTTC--
T ss_pred             cccchhhhhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhhcCcccc-------HHH------HHHHHCcC--
Confidence                 2335689999999973   21     13445688899999999999988       687      44778888  


Q ss_pred             ccCCcccHHHHHHHHHHHHHHHHHHhCCC
Q 024306          241 PVPGGVGPMTVAMLLSNTLDSAKRAYGFT  269 (269)
Q Consensus       241 pvpgGvGp~T~~mLl~n~v~a~~~~~~~~  269 (269)
                      ++.+|.+     ||++|++.+|++|||.+
T Consensus       145 ~~i~Gl~-----Mli~Qa~~~f~iwtg~~  168 (182)
T d1vi2a1         145 KTIDGYG-----MLLWQGAEQFTLWTGKD  168 (182)
T ss_dssp             EEECHHH-----HHHHHHHHHHHHHHSSC
T ss_pred             eEeccHH-----HHHHHHHHHHHHHhCCC
Confidence            4477774     99999999999999974

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=99.83  E-value=4.1e-21  Score=158.55  Aligned_cols=129  Identities=11%  Similarity=0.173  Sum_probs=105.1

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCCC---Hh----------hhcCCCCEEE
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTKN---PE----------QITSEADIVI  184 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~~---l~----------~~~~~aDiVI  184 (269)
                      |..|+.++|++++++ ++|+|+|+|+||+ ||+++..|.+.|+ +|+|++|+.+.   +.          ....++|+||
T Consensus         1 D~~G~~~~l~~~~~~-~~~~vlIlGaGGa-arai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~~~~~DliI   78 (167)
T d1npya1           1 DYIAIVKLIEKYHLN-KNAKVIVHGSGGM-AKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLENQQADILV   78 (167)
T ss_dssp             HHHHHHHHHHHTTCC-TTSCEEEECSSTT-HHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCTTCCCSEEE
T ss_pred             ChHHHHHHHHHcCCC-CCCeEEEECCCHH-HHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcccccchhhhe
Confidence            358999999999998 8999999999998 9999999999997 69999997321   11          1236789999


Q ss_pred             eccCC---CC------cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHHHH
Q 024306          185 AAAGV---AN------LVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAMLL  255 (269)
Q Consensus       185 sAtg~---p~------~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~mLl  255 (269)
                      |||+.   |+      .++...++++.+|+|+.|+|.+|       +|+      ..+++.|+  ++.+|.+     ||+
T Consensus        79 NaTpiGm~~~~~~~~l~~~~~~~~~~~~v~D~vY~P~~T-------~ll------~~A~~~G~--~~i~Gl~-----Mli  138 (167)
T d1npya1          79 NVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVET-------PFI------RYAQARGK--QTISGAA-----VIV  138 (167)
T ss_dssp             ECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSC-------HHH------HHHHHTTC--EEECHHH-----HHH
T ss_pred             eccccCCccccccccccccHhhcCCcceEEEEeeccCCC-------HHH------HHHHHCCC--eEEECHH-----HHH
Confidence            99973   22      13445577899999999999988       788      44788888  4577885     999


Q ss_pred             HHHHHHHHHHhCCC
Q 024306          256 SNTLDSAKRAYGFT  269 (269)
Q Consensus       256 ~n~v~a~~~~~~~~  269 (269)
                      +|++.+|++|+|..
T Consensus       139 ~Qa~~~f~lwtg~~  152 (167)
T d1npya1         139 LQAVEQFELYTHQR  152 (167)
T ss_dssp             HHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999999964

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.82  E-value=1.2e-20  Score=156.73  Aligned_cols=129  Identities=19%  Similarity=0.244  Sum_probs=107.3

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------------CHh
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------------NPE  174 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------------~l~  174 (269)
                      |..|+++.|++++.+++||+|+|+|+||+ +|++++.|.+.| +|+|++|+..                        ++.
T Consensus         1 D~~G~~~~l~~~~~~~~~k~vlIlGaGG~-arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~   78 (177)
T d1nvta1           1 DGIGARMALEEEIGRVKDKNIVIYGAGGA-ARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLD   78 (177)
T ss_dssp             HHHHHHHHHHHHHCCCCSCEEEEECCSHH-HHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTT
T ss_pred             CHHHHHHHHHHhCCCcCCCEEEEECCcHH-HHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhh
Confidence            35899999999999999999999999998 999999998776 9999999731                        223


Q ss_pred             hhcCCCCEEEeccCC---CC-----cccCCCcCCCcEEEEeeecCCCCCCCCCCceeecccchHHHhhHcceecccCCcc
Q 024306          175 QITSEADIVIAAAGV---AN-----LVRGSWLKPGAVVLDVGTCPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGV  246 (269)
Q Consensus       175 ~~~~~aDiVIsAtg~---p~-----~i~~~~~~~g~vViDv~~~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGv  246 (269)
                      ..+..+|++|++|+.   |.     .++.+.++++.+++|+.|+|.+|       +|+      ..++..++  ++.+|+
T Consensus        79 ~~~~~~dliIn~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~T-------~l~------~~a~~~G~--~~i~Gl  143 (177)
T d1nvta1          79 VDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLET-------VLL------KEAKKVNA--KTINGL  143 (177)
T ss_dssp             CCCTTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSC-------HHH------HHHHTTTC--EEECTH
T ss_pred             hccchhhhhccCCcccccccccccchhhhhccCcccceeeecCCcHhH-------HHH------HHHHHCCC--cccCCH
Confidence            456789999999984   22     25667788999999999999988       677      44777888  446777


Q ss_pred             cHHHHHHHHHHHHHHHHHHhCCC
Q 024306          247 GPMTVAMLLSNTLDSAKRAYGFT  269 (269)
Q Consensus       247 Gp~T~~mLl~n~v~a~~~~~~~~  269 (269)
                           .||++|++.+|++|||.+
T Consensus       144 -----~MLv~Qa~~qf~lwtg~~  161 (177)
T d1nvta1         144 -----GMLIYQGAVAFKIWTGVE  161 (177)
T ss_dssp             -----HHHHHHHHHHHHHHHSSC
T ss_pred             -----HHHHHHHHHHHHHHHCCC
Confidence                 599999999999999964

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=99.80  E-value=2e-20  Score=155.00  Aligned_cols=131  Identities=18%  Similarity=0.190  Sum_probs=105.2

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH-------------------hhhcCC
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP-------------------EQITSE  179 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l-------------------~~~~~~  179 (269)
                      |..|+++.|++.+++++||+|+|+|+||+ +|+++..|.+.+.+|+|++|+.+..                   ...+.+
T Consensus         1 D~~Gf~~~l~~~~~~~~~k~vlIlGaGGa-arai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1p77a1           1 DGIGLVTDLQRLNWLRPNQHVLILGAGGA-TKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQT   79 (171)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEECCSHH-HHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSC
T ss_pred             CHHHHHHHHHHcCCCCCCCEEEEECCcHH-HHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccc
Confidence            35899999999999999999999999998 9999999998888999999974211                   123568


Q ss_pred             CCEEEeccCC--CC---cccCCCcCCCcEEEEeee-cCCCCCCCCCCceeecccchHHHhhHcceecccCCcccHHHHHH
Q 024306          180 ADIVIAAAGV--AN---LVRGSWLKPGAVVLDVGT-CPVDDPSCEYGYRLMGDVCYEEAMRLASVITPVPGGVGPMTVAM  253 (269)
Q Consensus       180 aDiVIsAtg~--p~---~i~~~~~~~g~vViDv~~-~~~~~~~~~~~~~l~GDvd~~~~~~~~~~~tpvpgGvGp~T~~m  253 (269)
                      +|+|||+|+.  ++   ....+.++++.+++|+.| +|.+|       +|+      ..+++.++.+ +.+|++     |
T Consensus        80 ~diiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~vy~~p~~T-------~~l------~~A~~~g~~~-v~~Gl~-----M  140 (171)
T d1p77a1          80 YDLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDT-------PFI------ALCKSLGLTN-VSDGFG-----M  140 (171)
T ss_dssp             CSEEEECCCC-------CCCHHHHHHCSCEEESCCCTTSCC-------HHH------HHHHHTTCCC-EECSHH-----H
T ss_pred             cceeeecccccccccccchhhhhhcccceeeeeeccCcccH-------HHH------HHHHHcCCCc-ccCcHH-----H
Confidence            9999999984  22   234445678899999999 67777       677      4477788744 557785     9


Q ss_pred             HHHHHHHHHHHHhCCC
Q 024306          254 LLSNTLDSAKRAYGFT  269 (269)
Q Consensus       254 Ll~n~v~a~~~~~~~~  269 (269)
                      |++|++.+|++|||.+
T Consensus       141 l~~Qa~~~f~iwtg~~  156 (171)
T d1p77a1         141 LVAQAAHSFHLWRGVM  156 (171)
T ss_dssp             HHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHCCC
Confidence            9999999999999974

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=99.40  E-value=1.7e-13  Score=111.54  Aligned_cols=96  Identities=14%  Similarity=0.192  Sum_probs=81.7

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-----------------CCHhhhcCCC
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-----------------KNPEQITSEA  180 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-----------------~~l~~~~~~a  180 (269)
                      .+.+++++.++...++++++|+|||+|++ |+.+++.|..+|+ .+++++|+.                 .++.+.+.++
T Consensus         7 v~~aAv~la~~~~~~l~~~~ilviGaG~~-g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~   85 (159)
T d1gpja2           7 IGSAAVELAERELGSLHDKTVLVVGAGEM-GKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARS   85 (159)
T ss_dssp             HHHHHHHHHHHHHSCCTTCEEEEESCCHH-HHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCcccCeEEEECCCHH-HHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccC
Confidence            46778888888877999999999999997 9999999999998 699999972                 3567788999


Q ss_pred             CEEEeccCCCCc-ccCCCcC---------CCcEEEEeeecCCCCC
Q 024306          181 DIVIAAAGVANL-VRGSWLK---------PGAVVLDVGTCPVDDP  215 (269)
Q Consensus       181 DiVIsAtg~p~~-i~~~~~~---------~g~vViDv~~~~~~~~  215 (269)
                      |+||+||+.|++ ++.++++         ...++||+++++..+|
T Consensus        86 Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr~vd~  130 (159)
T d1gpja2          86 DVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPRDVEE  130 (159)
T ss_dssp             SEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCSBCT
T ss_pred             CEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeecCCCCcCh
Confidence            999999999886 7888774         2459999999886654

>d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=8.2e-12  Score=94.21  Aligned_cols=79  Identities=16%  Similarity=0.176  Sum_probs=64.6

Q ss_pred             eCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-cc
Q 024306           16 VGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EK   93 (269)
Q Consensus        16 vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~k   93 (269)
                      +| +|.+||.++.+++ +|+++|+++.|..++.  ++++|.+.++.+++ .++.|++||+|||+.+  .++++.+++ .+
T Consensus         9 iG-~Pi~hS~SP~ihn~~f~~~gi~~~Y~~~~v--~~~~l~~~~~~l~~-~~~~G~nVT~P~K~~~--~~~~d~~~~~a~   82 (102)
T d1vi2a2           9 MA-YPIRHSLSPEMQNKALEKAGLPFTYMAFEV--DNDSFPGAIEGLKA-LKMRGTGVSMPNKQLA--CEYVDELTPAAK   82 (102)
T ss_dssp             EE-SCCTTCSHHHHHHHHHHHTTCSEEEEEEEC--CTTTHHHHHHHHHH-TTCCEEEECTTSTTGG--GGGCSEECHHHH
T ss_pred             Ec-CCcccccCHHHHHHHHHHcCCCcEEeeEee--CchHHHHHHHHhhh-hccchhhhhhHHHHHH--HHhcccCCHHHH
Confidence            35 8999999999888 9999999999999965  46789999999988 5899999999999854  666666666 34


Q ss_pred             ccccccccee
Q 024306           94 DVDGFHPLNI  103 (269)
Q Consensus        94 dvdg~~~~n~  103 (269)
                      .   ++++|+
T Consensus        83 ~---igAvNt   89 (102)
T d1vi2a2          83 L---VGAINT   89 (102)
T ss_dssp             H---HTCCSE
T ss_pred             h---hCcEEE
Confidence            3   346664

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.06  E-value=2.8e-10  Score=92.12  Aligned_cols=91  Identities=20%  Similarity=0.249  Sum_probs=76.3

Q ss_pred             HHHHHH-HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEec
Q 024306          121 KGCIEL-LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAA  186 (269)
Q Consensus       121 ~g~~~~-l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIsA  186 (269)
                      +..++. ++..+.-+.||+++|+|.|.. ||.+|+.|..+|+.|+|+....             ..+.+.++.+|++|+|
T Consensus         7 ~S~~d~i~r~t~~~laGk~vvV~GYG~v-GrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTa   85 (163)
T d1v8ba1           7 HSLPDGLMRATDFLISGKIVVICGYGDV-GKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITC   85 (163)
T ss_dssp             HHHHHHHHHHHCCCCTTSEEEEECCSHH-HHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEEC
T ss_pred             hhHHHHHHHHhCceecCCEEEEeccccc-chhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcEEEEc
Confidence            343333 346688999999999999996 9999999999999999997652             4678999999999999


Q ss_pred             cCCCCcccCCC---cCCCcEEEEeeecCC
Q 024306          187 AGVANLVRGSW---LKPGAVVLDVGTCPV  212 (269)
Q Consensus       187 tg~p~~i~~~~---~~~g~vViDv~~~~~  212 (269)
                      ||.++.++.++   +|+|++|..+|....
T Consensus        86 TGn~~vI~~~h~~~MKdgaIl~N~GHfd~  114 (163)
T d1v8ba1          86 TGNVDVIKLEHLLKMKNNAVVGNIGHFDD  114 (163)
T ss_dssp             CSSSSSBCHHHHTTCCTTCEEEECSSTTT
T ss_pred             CCCCccccHHHHHHhhCCeEEEeccccch
Confidence            99998888775   578999999997643

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=4.9e-10  Score=90.92  Aligned_cols=91  Identities=24%  Similarity=0.344  Sum_probs=77.0

Q ss_pred             HHHHHHH-HHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEe
Q 024306          120 PKGCIEL-LIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIA  185 (269)
Q Consensus       120 ~~g~~~~-l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIs  185 (269)
                      .+.+++. ++..+..+.||+++|+|.|.+ ||.+|+.|...|++|+++....             ..+.+.++.||++|+
T Consensus         7 g~S~~~~~~r~t~~~l~Gk~v~V~GyG~i-G~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvt   85 (163)
T d1li4a1           7 RESLIDGIKRATDVMIAGKVAVVAGYGDV-GKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVT   85 (163)
T ss_dssp             HHHHHHHHHHHHCCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEE
T ss_pred             hhhHHHHHHHHhCceecCCEEEEeccccc-cHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEe
Confidence            3455543 446789999999999999996 9999999999999999997652             467889999999999


Q ss_pred             ccCCCCcccCCC---cCCCcEEEEeeecC
Q 024306          186 AAGVANLVRGSW---LKPGAVVLDVGTCP  211 (269)
Q Consensus       186 Atg~p~~i~~~~---~~~g~vViDv~~~~  211 (269)
                      +||.++.|+.++   +|+|+++..+|...
T Consensus        86 aTGn~~vI~~eh~~~MKdgaIL~N~Ghfd  114 (163)
T d1li4a1          86 TTGCIDIILGRHFEQMKDDAIVCNIGHFD  114 (163)
T ss_dssp             CSSCSCSBCHHHHTTCCTTEEEEECSSST
T ss_pred             cCCCccchhHHHHHhccCCeEEEEecccc
Confidence            999999888775   57899999999654

>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=98.97  E-value=9e-11  Score=88.17  Aligned_cols=78  Identities=13%  Similarity=0.051  Sum_probs=63.7

Q ss_pred             CCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-ccc
Q 024306           17 GERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EKD   94 (269)
Q Consensus        17 g~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~kd   94 (269)
                      | +|-+||.++.+++ +|++.|+++.|..++.  +++++.+.++.+.+ .++.|++||+|||+.+  .++++.+++ .+.
T Consensus         8 G-~PI~hS~SP~ihn~~~~~~gi~~~y~~~~v--~~~~~~~~~~~l~~-~~~~G~nVT~P~K~~~--~~~~d~~~~~a~~   81 (101)
T d1p77a2           8 G-NPIAQSKSPLIQNKLAAQTHQTMEYIAKLG--DLDAFEQQLLAFFE-EGAKGCNITSPFKERA--YQLADEYSQRAKL   81 (101)
T ss_dssp             E-SSCTTCCHHHHHHHHHHHTTCCEEEEEEEC--CTTTHHHHHHHHHH-TTCCEEEECTTCHHHH--HHHCSEECHHHHH
T ss_pred             C-CCcccccCHHHHHHHHHHcCCCcccccccC--CHHHHHHHHHHHHh-ccccceeeccHHHHHH--HHHhccCCHHHHH
Confidence            5 8999999999887 9999999999999965  46789999999987 5899999999999743  666677766 444


Q ss_pred             cccccccee
Q 024306           95 VDGFHPLNI  103 (269)
Q Consensus        95 vdg~~~~n~  103 (269)
                      +.   ++|+
T Consensus        82 ig---AvNt   87 (101)
T d1p77a2          82 AE---ACNT   87 (101)
T ss_dssp             HT---CCSE
T ss_pred             cC---eeEE
Confidence            44   5553

>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.96  E-value=8.3e-11  Score=89.73  Aligned_cols=88  Identities=15%  Similarity=0.229  Sum_probs=68.0

Q ss_pred             CCCCeEEEEEeCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHH
Q 024306            6 GKVPGLAVILVGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGK   84 (269)
Q Consensus         6 ~~~p~L~~i~vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~   84 (269)
                      ..+.++ .=.+| +|.+||.++..++ +|++.|++++|..++.  +++++.+.++.+++ .++.|++||+|||+.+  .+
T Consensus         8 ~~~tk~-~gliG-~pi~~S~SP~ihn~~~~~~gi~~~y~~~~v--~~~~l~~~~~~~~~-~~~~G~nVT~P~K~~~--~~   80 (110)
T d1nvta2           8 NAKTKV-IGLIG-HPVEHSFSPIMHNAAFKDKGLNYVYVAFDV--LPENLKYVIDGAKA-LGIVGFNVTIPHKIEI--MK   80 (110)
T ss_dssp             CTTCEE-EEEEE-SSCTTCSHHHHHHHHHHHTTCCEEEEEEEC--CGGGGGGHHHHHHH-HTCCEEEECTTSTTGG--GG
T ss_pred             CCCccE-EEEEc-CCcccccCHHHHHHHHHHcCCcEEEeeccc--CHHHHHHHHHhhcc-cCcchhheehHHHHHH--HH
Confidence            344555 22346 8999999999877 9999999999999965  56788888888886 5899999999999855  66


Q ss_pred             HHhcCCc-ccccccccccee
Q 024306           85 ILDAVSL-EKDVDGFHPLNI  103 (269)
Q Consensus        85 i~~~i~p-~kdvdg~~~~n~  103 (269)
                      +++.+++ .+.+   .++|+
T Consensus        81 ~~d~~s~~a~~i---gavNt   97 (110)
T d1nvta2          81 YLDEIDKDAQLI---GAVNT   97 (110)
T ss_dssp             GCSEECHHHHHH---TCCCE
T ss_pred             HhccCCHHHHHh---CcEEE
Confidence            7777777 3443   35664

>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=6.8e-11  Score=88.88  Aligned_cols=79  Identities=11%  Similarity=0.122  Sum_probs=63.8

Q ss_pred             eCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCc-cc
Q 024306           16 VGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSL-EK   93 (269)
Q Consensus        16 vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p-~k   93 (269)
                      +| +|.+||.++..++ +|+++|+++.|..++.  +++++.+.++.+++ .++.|++||+|||+.+  .++++.+++ .+
T Consensus         7 iG-~pi~hS~SP~ihn~~~~~~gi~~~y~~~~v--~~~~~~~~~~~l~~-~~~~G~nVT~P~K~~~--~~~~d~~~~~a~   80 (101)
T d1nyta2           7 FG-NPIAHSKSPFIHQQFAQQLNIEHPYGRVLA--PINDFINTLNAFFS-AGGKGANVTVPFKEEA--FARADELTERAA   80 (101)
T ss_dssp             EE-SSCTTCSHHHHHHHHHHHHTCCCCEEEEEC--CTTCHHHHHHHHHH-TTCCEEEECTTCHHHH--HHHCSEECHHHH
T ss_pred             eC-CCcccccCHHHHHHHHHHcCCcchhhhhcC--ChHhHHHHHHHhhh-ccchhheeehHHHHHH--HHHhccCChHHH
Confidence            35 8999999999888 9999999999999865  46789999999987 6899999999999744  666666666 44


Q ss_pred             ccccccccee
Q 024306           94 DVDGFHPLNI  103 (269)
Q Consensus        94 dvdg~~~~n~  103 (269)
                      .+.   ++|+
T Consensus        81 ~ig---AvNt   87 (101)
T d1nyta2          81 LAG---AVNT   87 (101)
T ss_dssp             HHT---CCSE
T ss_pred             HhC---cEEE
Confidence            444   5663

>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=98.91  E-value=2.4e-10  Score=85.92  Aligned_cols=81  Identities=16%  Similarity=0.280  Sum_probs=60.8

Q ss_pred             eEEEEEeCCCcchHHHHHHHHH-HHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhc
Q 024306           10 GLAVILVGERRDSQTYVRNKIK-ACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDA   88 (269)
Q Consensus        10 ~L~~i~vg~~~~s~~y~~~~~~-~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~   88 (269)
                      ++.+ -+..+|.|.  ++.+++ +|+++|++++|..|+.+    ++.+.++.+++ .++.|++||+|||+.+  .++++.
T Consensus         7 ~~~~-~i~g~P~s~--SP~ihn~~~~~~gi~~~Y~~~~v~----~l~~~~~~~~~-~~~~G~nVT~P~K~~~--~~~~d~   76 (102)
T d1npya2           7 QLCM-SLSGRPSNF--GTTFHNYLYDKLGLNFIYKAFTTQ----DIEHAIKGVRA-LGIRGCAVSMPFKETC--MPFLDE   76 (102)
T ss_dssp             EEEE-EECSSCCSH--HHHHHHHHHHHHTCCEEEEEECCS----CHHHHHHHHHH-HTCCEEEECTTCTTTT--GGGCSE
T ss_pred             EEEE-EEcCCcccC--CHHHHHHHHHHcCCCeEEeeEecc----cHHHHHHHHhc-cccceeEEehhHHHHH--HHHhhh
Confidence            4543 445578654  555555 99999999999999763    57788888887 5899999999999966  777777


Q ss_pred             CCc-ccccccccccee
Q 024306           89 VSL-EKDVDGFHPLNI  103 (269)
Q Consensus        89 i~p-~kdvdg~~~~n~  103 (269)
                      +++ .+.+   +++|+
T Consensus        77 ~s~~a~~i---gAvNt   89 (102)
T d1npya2          77 IHPSAQAI---ESVNT   89 (102)
T ss_dssp             ECHHHHTT---TCCCE
T ss_pred             CChhhhhc---CcEEE
Confidence            777 4443   45664

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.84  E-value=5.5e-09  Score=86.17  Aligned_cols=94  Identities=21%  Similarity=0.269  Sum_probs=71.0

Q ss_pred             cCCHHHHHHHH-HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------------
Q 024306          117 PCTPKGCIELL-IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------------  170 (269)
Q Consensus       117 p~t~~g~~~~l-~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------------  170 (269)
                      ++|+.|.+..+ +..+.+|+||+++|.|+++-+|+.+++.|+++|++|+++.|+.                         
T Consensus         3 ~~~~~~~v~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~   82 (191)
T d1luaa1           3 NTTAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD   82 (191)
T ss_dssp             HHHHHHHHHHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS
T ss_pred             CccHHHHHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhccc
Confidence            45778877777 5568999999999999877789999999999999999998762                         


Q ss_pred             -CCHhhhcCCCCEEEeccCCC-CcccCCCcCC---CcEEEEeeec
Q 024306          171 -KNPEQITSEADIVIAAAGVA-NLVRGSWLKP---GAVVLDVGTC  210 (269)
Q Consensus       171 -~~l~~~~~~aDiVIsAtg~p-~~i~~~~~~~---g~vViDv~~~  210 (269)
                       .++++.+.++|+||+++|.+ ..++.+.++.   -.++.|+-..
T Consensus        83 ~~~~~~~~~~iDilin~Ag~g~~~~~~e~~~~~~~~nv~~~~~~~  127 (191)
T d1luaa1          83 DASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQ  127 (191)
T ss_dssp             HHHHHHHTTTCSEEEECCCTTCCCBCHHHHHTCTTCCEEEECCCS
T ss_pred             HHHHHHHhcCcCeeeecCccccccCCHHHHHhhhcceeehhHhhH
Confidence             23456788999999999853 3455555433   2345555443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.78  E-value=2.4e-09  Score=87.04  Aligned_cols=77  Identities=25%  Similarity=0.324  Sum_probs=65.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------CCHhhhcCCCCEEEeccC----
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAG----  188 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------~~l~~~~~~aDiVIsAtg----  188 (269)
                      ++..+|+|||+|-+ |..++..+...||.|++++.+.                     ..+.+.+++||+||+++=    
T Consensus        30 v~pa~V~ViGaGva-G~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          30 VKPGKVVILGGGVV-GTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             BCCCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCcEEEEECCChH-HHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence            56789999999887 9999999999999999997651                     246788999999999884    


Q ss_pred             -CCCcccCCCc---CCCcEEEEeeecC
Q 024306          189 -VANLVRGSWL---KPGAVVLDVGTCP  211 (269)
Q Consensus       189 -~p~~i~~~~~---~~g~vViDv~~~~  211 (269)
                       .|++|+++|+   |||+++||++.+.
T Consensus       109 ~aP~lIt~~mv~~Mk~GSVIVDvaidq  135 (168)
T d1pjca1         109 RAPILVPASLVEQMRTGSVIVDVAVDQ  135 (168)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETTCTT
T ss_pred             ccCeeecHHHHhhcCCCcEEEEeecCC
Confidence             3668999985   7899999999865

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.54  E-value=6.7e-08  Score=79.39  Aligned_cols=77  Identities=22%  Similarity=0.264  Sum_probs=62.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC------------------------------------------
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK------------------------------------------  171 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~------------------------------------------  171 (269)
                      +...+|+|||+|-+ |..++......||.|++++.+..                                          
T Consensus        27 V~pa~VvViGaGva-G~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~  105 (183)
T d1l7da1          27 VPPARVLVFGVGVA-GLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  105 (183)
T ss_dssp             ECCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHH
T ss_pred             cCCcEEEEEcCcHH-HHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHH
Confidence            45679999999886 99999999999999999975421                                          


Q ss_pred             -CHhhhcCCCCEEEeccC-----CCCcccCCCc---CCCcEEEEeeecC
Q 024306          172 -NPEQITSEADIVIAAAG-----VANLVRGSWL---KPGAVVLDVGTCP  211 (269)
Q Consensus       172 -~l~~~~~~aDiVIsAtg-----~p~~i~~~~~---~~g~vViDv~~~~  211 (269)
                       .+.+.+++||+||+++=     .|.+++++|+   |+|+++||++...
T Consensus       106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidq  154 (183)
T d1l7da1         106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEA  154 (183)
T ss_dssp             HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGG
T ss_pred             HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecC
Confidence             12345889999998884     3667999975   7899999999864

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.31  E-value=8.4e-07  Score=72.57  Aligned_cols=77  Identities=25%  Similarity=0.302  Sum_probs=65.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------CCHhhhcCCCCEEEeccCC----CCcccCCC---
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------KNPEQITSEADIVIAAAGV----ANLVRGSW---  197 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------~~l~~~~~~aDiVIsAtg~----p~~i~~~~---  197 (269)
                      .++||++.|||.|.+ |+.++++|...|++|+.+++..        .++.+.+++||+|+.+++.    .++++.+.   
T Consensus        39 ~l~gk~vgIiG~G~I-G~~va~~l~~~g~~v~~~d~~~~~~~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~  117 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEI-GTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLAL  117 (181)
T ss_dssp             CCTTCEEEEESCSTH-HHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTT
T ss_pred             cccCceEEEeccccc-cccceeeeeccccccccccccccccceeeeechhhhhhccchhhcccccccccccccccceeee
Confidence            478999999999996 9999999999999999998753        3678999999999998883    24676664   


Q ss_pred             cCCCcEEEEeeec
Q 024306          198 LKPGAVVLDVGTC  210 (269)
Q Consensus       198 ~~~g~vViDv~~~  210 (269)
                      +++++++|+++..
T Consensus       118 mk~~ailIN~~RG  130 (181)
T d1qp8a1         118 MAEDAVFVNVGRA  130 (181)
T ss_dssp             SCTTCEEEECSCG
T ss_pred             ccccceEEecccc
Confidence            5889999999854

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.21  E-value=6.4e-07  Score=70.95  Aligned_cols=76  Identities=16%  Similarity=0.155  Sum_probs=57.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------CHhhhcCCCCEEEeccCCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------NPEQITSEADIVIAAAGVAN  191 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------~l~~~~~~aDiVIsAtg~p~  191 (269)
                      ++|+|+|||+|.+ |+++|..|.++|.+|++++|+..                       .+.+.+..+|++|++++...
T Consensus         1 ~~K~IliiGaG~~-G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~   79 (182)
T d1e5qa1           1 ATKSVLMLGSGFV-TRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTF   79 (182)
T ss_dssp             CCCEEEEECCSTT-HHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGG
T ss_pred             CCCEEEEECCCHH-HHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchh
Confidence            4799999999886 99999999999999999998721                       23456788899998887422


Q ss_pred             -c-ccCCCcCCCcEEEEeeecC
Q 024306          192 -L-VRGSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       192 -~-i~~~~~~~g~vViDv~~~~  211 (269)
                       . +.....+.+..++|+.+.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~  101 (182)
T d1e5qa1          80 HATVIKSAIRQKKHVVTTSYVS  101 (182)
T ss_dssp             HHHHHHHHHHHTCEEECSSCCC
T ss_pred             hhHHHHHHHhhccceeecccCc
Confidence             1 3334455677888888754

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=98.17  E-value=1.2e-06  Score=72.68  Aligned_cols=81  Identities=17%  Similarity=0.304  Sum_probs=67.2

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------CCHhhhcCCCCEEEeccCC----CCcccC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------KNPEQITSEADIVIAAAGV----ANLVRG  195 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------~~l~~~~~~aDiVIsAtg~----p~~i~~  195 (269)
                      +.++.||+|.|||.|.+ |+.+|++|...|++|..+++..           .++.+.+++||+|+..++.    .++++.
T Consensus        38 g~el~gk~vgIiG~G~I-G~~va~~l~~fg~~V~~~d~~~~~~~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~  116 (197)
T d1j4aa1          38 GREVRDQVVGVVGTGHI-GQVFMQIMEGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMIND  116 (197)
T ss_dssp             BCCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCHHHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSH
T ss_pred             CccccCCeEEEeccccc-chhHHHhHhhhcccccccCcccccccccceeeeccccccccccccccccCCccccccccccH
Confidence            46789999999999997 9999999999999999987542           3688899999999998873    346776


Q ss_pred             CC---cCCCcEEEEeeecCC
Q 024306          196 SW---LKPGAVVLDVGTCPV  212 (269)
Q Consensus       196 ~~---~~~g~vViDv~~~~~  212 (269)
                      +.   +++++++|.++....
T Consensus       117 ~~l~~mk~~a~lIN~sRG~i  136 (197)
T d1j4aa1         117 ESIAKMKQDVVIVNVSRGPL  136 (197)
T ss_dssp             HHHHHSCTTEEEEECSCGGG
T ss_pred             HHHhhhCCccEEEecCchhh
Confidence            64   578999999986543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=98.11  E-value=3.1e-06  Score=69.77  Aligned_cols=83  Identities=16%  Similarity=0.256  Sum_probs=68.5

Q ss_pred             HhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------CCHhhhcCCCCEEEeccCC----CC
Q 024306          129 RSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------KNPEQITSEADIVIAAAGV----AN  191 (269)
Q Consensus       129 ~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------~~l~~~~~~aDiVIsAtg~----p~  191 (269)
                      ..+.++.||++.|||.|.+ |+.+++.|...|++|...++..             .++.+.+++||+|+..++.    .+
T Consensus        42 ~~~~eL~gktvgIiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~  120 (193)
T d1mx3a1          42 SGAARIRGETLGIIGLGRV-GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH  120 (193)
T ss_dssp             TTCCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTT
T ss_pred             cCceeeeCceEEEeccccc-cccceeeeeccccceeeccCcccccchhhhccccccchhhccccCCEEEEeecccccchh
Confidence            3467899999999999997 9999999999999999987652             3678899999999988873    23


Q ss_pred             cccCC---CcCCCcEEEEeeecCC
Q 024306          192 LVRGS---WLKPGAVVLDVGTCPV  212 (269)
Q Consensus       192 ~i~~~---~~~~g~vViDv~~~~~  212 (269)
                      +++.+   .+++++++|.++....
T Consensus       121 li~~~~l~~mk~~a~lIN~sRG~i  144 (193)
T d1mx3a1         121 LINDFTVKQMRQGAFLVNTARGGL  144 (193)
T ss_dssp             SBSHHHHTTSCTTEEEEECSCTTS
T ss_pred             hhhHHHHhccCCCCeEEecCCceE
Confidence            56655   4688999999987544

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=1.7e-06  Score=62.82  Aligned_cols=37  Identities=24%  Similarity=0.329  Sum_probs=34.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +++||+|+|+|.|.+ |+++|+.|.++|+.|++++.+.
T Consensus         2 ~~~~K~v~ViGlG~s-G~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           2 DYQGKNVVIIGLGLT-GLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             CCTTCCEEEECCSHH-HHHHHHHHHHTTCCCEEEESSS
T ss_pred             CcCCCEEEEEeECHH-HHHHHHHHHHCCCEEEEeeCCc
Confidence            689999999999999 9999999999999999998764

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=98.01  E-value=4.1e-06  Score=69.30  Aligned_cols=82  Identities=20%  Similarity=0.285  Sum_probs=68.2

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------CCHhhhcCCCCEEEeccCC----CCcccCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------KNPEQITSEADIVIAAAGV----ANLVRGS  196 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------~~l~~~~~~aDiVIsAtg~----p~~i~~~  196 (269)
                      +.++.||++.|||.|.+ |+.++++|...|++|..+++..          .++.+.+++||+|+..++.    .++++.+
T Consensus        40 ~~~l~~ktvgIiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~  118 (199)
T d1dxya1          40 GKELGQQTVGVMGTGHI-GQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEA  118 (199)
T ss_dssp             CCCGGGSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSSCCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHH
T ss_pred             cccccceeeeeeecccc-cccccccccccceeeeccCCccchhhhcchhHHHHHHHHHhcccceeeecccccccccccHH
Confidence            46789999999999997 9999999999999999997653          2577889999999988873    3367766


Q ss_pred             C---cCCCcEEEEeeecCCC
Q 024306          197 W---LKPGAVVLDVGTCPVD  213 (269)
Q Consensus       197 ~---~~~g~vViDv~~~~~~  213 (269)
                      .   +++++++|.++.....
T Consensus       119 ~l~~mk~~a~lIN~aRG~vv  138 (199)
T d1dxya1         119 AFNLMKPGAIVINTARPNLI  138 (199)
T ss_dssp             HHHHSCTTEEEEECSCTTSB
T ss_pred             HhhccCCceEEEecccHhhh
Confidence            4   5889999999976553

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.00  E-value=7e-06  Score=66.99  Aligned_cols=81  Identities=22%  Similarity=0.323  Sum_probs=67.1

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC------------CCHhhhcCCCCEEEeccCC----CCccc
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT------------KNPEQITSEADIVIAAAGV----ANLVR  194 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t------------~~l~~~~~~aDiVIsAtg~----p~~i~  194 (269)
                      +.++.||++.|+|.|.. |+.+++.|...|++|....+..            .++.+.+++||+|+..++.    .++|+
T Consensus        39 ~~~l~~k~vgiiG~G~I-G~~va~~~~~fg~~v~~~d~~~~~~~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin  117 (184)
T d1ygya1          39 GTEIFGKTVGVVGLGRI-GQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLID  117 (184)
T ss_dssp             BCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBC
T ss_pred             cccccceeeeeccccch-hHHHHHHhhhccceEEeecCCCChhHHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhh
Confidence            45689999999999997 9999999999999999987653            3677889999999998882    34677


Q ss_pred             CCC---cCCCcEEEEeeecCC
Q 024306          195 GSW---LKPGAVVLDVGTCPV  212 (269)
Q Consensus       195 ~~~---~~~g~vViDv~~~~~  212 (269)
                      .+.   +++++++|.++.-..
T Consensus       118 ~~~l~~mk~~a~lIN~sRG~i  138 (184)
T d1ygya1         118 KEALAKTKPGVIIVNAARGGL  138 (184)
T ss_dssp             HHHHTTSCTTEEEEECSCTTS
T ss_pred             HHHHhhhCCCceEEEecchhh
Confidence            664   578999999987654

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=98.00  E-value=9e-06  Score=66.43  Aligned_cols=82  Identities=12%  Similarity=0.204  Sum_probs=67.5

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCC----CC
Q 024306          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV----AN  191 (269)
Q Consensus       130 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~----p~  191 (269)
                      ...+++|+++.|+|.|.+ |+.++++|...|++|....+..              .++.+.+++||+|+...+.    .+
T Consensus        38 ~~~~l~~~~vgiiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~  116 (188)
T d2naca1          38 HAYDLEAMHVGTVAAGRI-GLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEH  116 (188)
T ss_dssp             TCCCCTTCEEEEECCSHH-HHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTT
T ss_pred             cceeccccceeecccccc-chhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchh
Confidence            467899999999999997 9999999999999999997642              3678899999999988873    23


Q ss_pred             cccCCC---cCCCcEEEEeeecCC
Q 024306          192 LVRGSW---LKPGAVVLDVGTCPV  212 (269)
Q Consensus       192 ~i~~~~---~~~g~vViDv~~~~~  212 (269)
                      +++.+.   +++|+++|.++....
T Consensus       117 li~~~~l~~mk~ga~lIN~aRG~i  140 (188)
T d2naca1         117 MINDETLKLFKRGAYIVNTARGKL  140 (188)
T ss_dssp             CBSHHHHTTSCTTEEEEECSCGGG
T ss_pred             hhHHHHHHhCCCCCEEEecCchhh
Confidence            576664   588999999886544

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=9e-06  Score=66.43  Aligned_cols=82  Identities=20%  Similarity=0.282  Sum_probs=68.5

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------CCHhhhcCCCCEEEeccCC-C---CcccCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------KNPEQITSEADIVIAAAGV-A---NLVRGS  196 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------~~l~~~~~~aDiVIsAtg~-p---~~i~~~  196 (269)
                      ..++.|+++.|+|.|.+ |+.++++|...|++|...++..          .++.+.+++||+|+.+.+. +   ++|+.+
T Consensus        39 ~~~l~~~~vgiiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~  117 (188)
T d1sc6a1          39 SFEARGKKLGIIGYGHI-GTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAK  117 (188)
T ss_dssp             CCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCCCCTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHH
T ss_pred             cccccceEEEEeecccc-hhhhhhhcccccceEeeccccccchhhhhhhhhhHHHHHhhccceeecccCCcchhhhccHH
Confidence            45789999999999997 9999999999999999997652          3588999999999988873 2   467777


Q ss_pred             C---cCCCcEEEEeeecCCC
Q 024306          197 W---LKPGAVVLDVGTCPVD  213 (269)
Q Consensus       197 ~---~~~g~vViDv~~~~~~  213 (269)
                      .   +++++++|.++.....
T Consensus       118 ~l~~mk~~a~lIN~aRG~lv  137 (188)
T d1sc6a1         118 EISLMKPGSLLINASRGTVV  137 (188)
T ss_dssp             HHHHSCTTEEEEECSCSSSB
T ss_pred             HHhhCCCCCEEEEcCcHHhh
Confidence            5   5789999999976553

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=97.89  E-value=1.3e-05  Score=65.82  Aligned_cols=82  Identities=15%  Similarity=0.171  Sum_probs=67.1

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCC-C---C
Q 024306          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGV-A---N  191 (269)
Q Consensus       130 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~-p---~  191 (269)
                      .+.+++||++.|||.|.+ |+.++++|...|++|....+..              .++.+.+++||+|+..++. +   +
T Consensus        41 ~~~~l~g~tvgIiG~G~I-G~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~  119 (191)
T d1gdha1          41 VGEKLDNKTLGIYGFGSI-GQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRY  119 (191)
T ss_dssp             CBCCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTT
T ss_pred             ccceecccceEEeecccc-hHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhh
Confidence            356789999999999997 9999999999999999887542              3578899999999988873 2   4


Q ss_pred             cccCCC---cCCCcEEEEeeecCC
Q 024306          192 LVRGSW---LKPGAVVLDVGTCPV  212 (269)
Q Consensus       192 ~i~~~~---~~~g~vViDv~~~~~  212 (269)
                      +|+.+.   +|+++++|.++....
T Consensus       120 li~~~~l~~mk~~a~lIN~sRG~i  143 (191)
T d1gdha1         120 FFNKATIKSLPQGAIVVNTARGDL  143 (191)
T ss_dssp             CBSHHHHTTSCTTEEEEECSCGGG
T ss_pred             eecHHHhhCcCCccEEEecCCccc
Confidence            676664   578999999986544

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.87  E-value=1.2e-05  Score=64.07  Aligned_cols=71  Identities=17%  Similarity=0.188  Sum_probs=56.0

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC-----------------------------CCCHhhhcCCCCEEEec
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-----------------------------TKNPEQITSEADIVIAA  186 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-----------------------------t~~l~~~~~~aDiVIsA  186 (269)
                      .|+++|||+|.+ |.++|..|+++|.+|++..|.                             +.++.+.++++|+||-+
T Consensus         1 sk~iaIiGaG~~-G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~   79 (184)
T d1bg6a2           1 SKTYAVLGLGNG-GHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   79 (184)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CCEEEEECccHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence            389999999886 999999999999999999764                             13567889999999999


Q ss_pred             cCCCCc---c--cCCCcCCCcEEEEe
Q 024306          187 AGVANL---V--RGSWLKPGAVVLDV  207 (269)
Q Consensus       187 tg~p~~---i--~~~~~~~g~vViDv  207 (269)
                      ++....   +  -..+++++++|+..
T Consensus        80 v~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          80 VPAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             SCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             EchhHHHHHHHHhhhccCCCCEEEEe
Confidence            986431   1  13367778877643

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.79  E-value=1.5e-05  Score=62.22  Aligned_cols=76  Identities=18%  Similarity=0.227  Sum_probs=59.8

Q ss_pred             CccceEEEEc-CCcccHHHHHHHHHhCCCEEEEEeCCCC-CHhhhcCCCCEEEeccCCCCc---c--cCCCcCCCcEEEE
Q 024306          134 IMGKNAVVIG-RSNIVGLPTSLLLQRHHATVSIVHALTK-NPEQITSEADIVIAAAGVANL---V--RGSWLKPGAVVLD  206 (269)
Q Consensus       134 l~gk~v~ViG-~gg~vg~~~a~~L~~~ga~Vti~~~~t~-~l~~~~~~aDiVIsAtg~p~~---i--~~~~~~~g~vViD  206 (269)
                      ..=|+|.||| .|.+ |++++..|.+.|.+|+++++... .......++|+++.+++....   +  -...++++++++|
T Consensus         7 ~~~~kI~iIGg~G~m-G~~la~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iiiD   85 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKL-GGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIERLKPYLTENMLLAD   85 (152)
T ss_dssp             TTCCCEEEETTTSHH-HHHHHHHHHTTTCCEEEECTTCGGGHHHHHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEE
T ss_pred             CCCCeEEEEcCCCHH-HHHHHHHHHHcCCCcEecccccccccchhhhhccccccccchhhheeeeecccccccCCceEEE
Confidence            3457999999 6776 99999999999999999998763 355678999999999985431   1  1234678999999


Q ss_pred             eeec
Q 024306          207 VGTC  210 (269)
Q Consensus       207 v~~~  210 (269)
                      ++..
T Consensus        86 ~~Sv   89 (152)
T d2pv7a2          86 LTSV   89 (152)
T ss_dssp             CCSC
T ss_pred             eccc
Confidence            9853

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.77  E-value=1.9e-05  Score=62.41  Aligned_cols=73  Identities=19%  Similarity=0.306  Sum_probs=58.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCC----c-ccCC--
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----L-VRGS--  196 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~----~-i~~~--  196 (269)
                      +|-|||.|.+ |.++|..|++.|.+|++++++.              .+..+.++++|+||.+++.+.    . +..+  
T Consensus         2 kIgiIGlG~M-G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           2 KVGFIGLGIM-GKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             EEEEECCSTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             EEEEEehhHH-HHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            6899999987 9999999999999999998873              356678999999999998543    1 2222  


Q ss_pred             --CcCCCcEEEEeeecC
Q 024306          197 --WLKPGAVVLDVGTCP  211 (269)
Q Consensus       197 --~~~~g~vViDv~~~~  211 (269)
                        .++++.++||+....
T Consensus        81 ~~~~~~g~iiid~sT~~   97 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIA   97 (161)
T ss_dssp             HHHCCTTCEEEECSCCC
T ss_pred             hhccCCCCEEEECCCCC
Confidence              357899999998653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.67  E-value=5.5e-05  Score=59.77  Aligned_cols=73  Identities=22%  Similarity=0.392  Sum_probs=59.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCC----cc-cCC-
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVAN----LV-RGS-  196 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~----~i-~~~-  196 (269)
                      ++|.+||.|.+ |.++|+.|.+.|.+|++.+++.              .++.+.++++|+|+..++.+.    .+ ..+ 
T Consensus         2 ~kIg~IGlG~M-G~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~   80 (162)
T d3cuma2           2 KQIAFIGLGHM-GAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDG   80 (162)
T ss_dssp             CEEEEECCSTT-HHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTC
T ss_pred             CEEEEEEEHHH-HHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhcccc
Confidence            57999999997 9999999999999999998862              467789999999999998533    11 112 


Q ss_pred             ---CcCCCcEEEEeeec
Q 024306          197 ---WLKPGAVVLDVGTC  210 (269)
Q Consensus       197 ---~~~~g~vViDv~~~  210 (269)
                         .++++.++||+...
T Consensus        81 ~~~~l~~g~iiid~st~   97 (162)
T d3cuma2          81 LLAHIAPGTLVLECSTI   97 (162)
T ss_dssp             HHHHSCTTCEEEECSCC
T ss_pred             ccccCCCCCEEEECCCC
Confidence               36789999999854

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.65  E-value=4.5e-05  Score=56.77  Aligned_cols=58  Identities=14%  Similarity=0.206  Sum_probs=44.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-CCH-----------------hhhcCCCCEEEeccCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-KNP-----------------EQITSEADIVIAAAGVA  190 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-~~l-----------------~~~~~~aDiVIsAtg~p  190 (269)
                      ++++||+|+|||.|.+ |..-++.|.+.||+|++..... +++                 .+.+..+++|+.+|+.+
T Consensus         8 l~l~~k~vlVvG~G~v-a~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~   83 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDV-AERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDD   83 (113)
T ss_dssp             ECCBTCEEEEECCSHH-HHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCH
T ss_pred             EEeCCCEEEEECCCHH-HHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCCH
Confidence            4789999999999996 9999999999999999986542 111                 23456677777777653

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.61  E-value=2.7e-05  Score=61.46  Aligned_cols=71  Identities=21%  Similarity=0.187  Sum_probs=55.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------CHhhhcCCCCEEEeccCCCC---cc--cCCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------NPEQITSEADIVIAAAGVAN---LV--RGSW  197 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------~l~~~~~~aDiVIsAtg~p~---~i--~~~~  197 (269)
                      ||.|||.|.+ |.++|+.|.+.|.+|+.++++..               +..+.+++||+||-|++...   .+  -.+.
T Consensus         2 kI~iIG~G~m-G~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~~~~~vl~~l~~~   80 (165)
T d2f1ka2           2 KIGVVGLGLI-GASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTLEKLIPH   80 (165)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHHHHHHHHHHHGGG
T ss_pred             EEEEEeecHH-HHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHhhhhhhhhhhhhh
Confidence            6899999886 99999999999999999987621               23467899999999997321   11  1245


Q ss_pred             cCCCcEEEEeee
Q 024306          198 LKPGAVVLDVGT  209 (269)
Q Consensus       198 ~~~g~vViDv~~  209 (269)
                      ++++.+|+|++.
T Consensus        81 l~~~~iv~~~~s   92 (165)
T d2f1ka2          81 LSPTAIVTDVAS   92 (165)
T ss_dssp             SCTTCEEEECCS
T ss_pred             cccccceeeccc
Confidence            788999999974

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=5.6e-05  Score=61.45  Aligned_cols=56  Identities=18%  Similarity=0.213  Sum_probs=47.0

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------CCHhhhcCCCCEEEeccCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------~~l~~~~~~aDiVIsAtg~p  190 (269)
                      ..|||+|+|++|.+|+.++..|.++|.+|+++.|+.                     .++.+.++++|+||+++|..
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~   78 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR   78 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEeccC
Confidence            458999999999899999999999999999997752                     13457789999999998853

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.55  E-value=4.2e-05  Score=61.33  Aligned_cols=94  Identities=20%  Similarity=0.288  Sum_probs=66.7

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHhh
Q 024306          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPEQ  175 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l~~  175 (269)
                      .+|.+.-+...+++...--+|.+|+|+|+|+ +|..+++.+..+|+ +|+++.+..                   .+..+
T Consensus         9 ~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~-iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~   87 (182)
T d1vj0a2           9 AMCSGATAYHAFDEYPESFAGKTVVIQGAGP-LGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEE   87 (182)
T ss_dssp             HTTHHHHHHHHHHTCSSCCBTCEEEEECCSH-HHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHH
T ss_pred             hhcHHHHHHHHHHHHhCCCCCCEEEEECCCc-cchhheecccccccccccccccccccccccccccceEEEeccccchHH
Confidence            4666666777776665445799999999987 59999999999998 688886541                   12211


Q ss_pred             -------hc--CCCCEEEeccCCCCccc--CCCcCCCcEEEEeeec
Q 024306          176 -------IT--SEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       176 -------~~--~~aDiVIsAtg~p~~i~--~~~~~~g~vViDv~~~  210 (269)
                             ..  +.+|+||.++|.+..+.  -+.++++-.++=+|..
T Consensus        88 ~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~  133 (182)
T d1vj0a2          88 RRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVA  133 (182)
T ss_dssp             HHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCC
T ss_pred             HHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeec
Confidence                   11  23799999999876432  4567887777777754

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.36  E-value=9.3e-05  Score=59.25  Aligned_cols=95  Identities=23%  Similarity=0.240  Sum_probs=66.7

Q ss_pred             cccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHh
Q 024306          115 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPE  174 (269)
Q Consensus       115 ~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l~  174 (269)
                      ++||...-.+..++..++. +|.+|+|+|+|++ |..+++.+...|+ +|+++.+..                   .+..
T Consensus         8 ~l~~~~~ta~~a~~~a~~~-~g~~VlI~GaG~v-Gl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~   85 (174)
T d1jqba2           8 MITDMMTTGFHGAELADIE-MGSSVVVIGIGAV-GLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIE   85 (174)
T ss_dssp             TTTTHHHHHHHHHHHTTCC-TTCCEEEECCSHH-HHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHH
T ss_pred             HhhhHHHHHHHHHHHhCCC-CCCEEEEEcCCcc-hhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHH
Confidence            4455544455666665554 6899999999885 9999999999998 588876541                   1222


Q ss_pred             ----hhc--CCCCEEEeccCCCCccc--CCCcCCCcEEEEeeecC
Q 024306          175 ----QIT--SEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       175 ----~~~--~~aDiVIsAtg~p~~i~--~~~~~~g~vViDv~~~~  211 (269)
                          +..  +.+|+||.++|.+..+.  -+.++++-.++-+|...
T Consensus        86 ~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~  130 (174)
T d1jqba2          86 DQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHG  130 (174)
T ss_dssp             HHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCC
T ss_pred             HHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecC
Confidence                222  23899999999877543  34678888888888654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=0.00032  Score=55.26  Aligned_cols=93  Identities=16%  Similarity=0.096  Sum_probs=63.4

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC--------------------Hhhh
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN--------------------PEQI  176 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~--------------------l~~~  176 (269)
                      +|-..-+...|++.++ -.|.+|+|+|+|+ +|..+++++..+|+++.++.+..+.                    ....
T Consensus        13 ~Cag~Tay~al~~~~~-~~G~~VlI~GaG~-vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~   90 (168)
T d1uufa2          13 LCAGITTYSPLRHWQA-GPGKKVGVVGIGG-LGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAH   90 (168)
T ss_dssp             GTHHHHHHHHHHHTTC-CTTCEEEEECCSH-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTT
T ss_pred             HhHHHHHHHHHHHhCC-CCCCEEEEeccch-HHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHh
Confidence            4533334555655444 3799999999987 5999999999999987777554211                    1233


Q ss_pred             cCCCCEEEeccCCCCcc--cCCCcCCCcEEEEeeecC
Q 024306          177 TSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       177 ~~~aDiVIsAtg~p~~i--~~~~~~~g~vViDv~~~~  211 (269)
                      .+.+|++|.++|.+..+  .-++++++-.++-+|...
T Consensus        91 ~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1uufa2          91 LKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPA  127 (168)
T ss_dssp             TTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-
T ss_pred             cCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCC
Confidence            45689999999977643  345677877777777643

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=0.00052  Score=54.02  Aligned_cols=93  Identities=17%  Similarity=0.255  Sum_probs=61.6

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------C-Hhh
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------N-PEQ  175 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~-l~~  175 (269)
                      +|...-....+++.++ -.|.+|+|+|+|+. |..+++++..+|++|+++.++..                    + .+.
T Consensus        10 ~cag~Ta~~al~~~~~-~~g~~vlI~GaG~v-G~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~   87 (168)
T d1piwa2          10 LCGGLTVYSPLVRNGC-GPGKKVGIVGLGGI-GSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEK   87 (168)
T ss_dssp             GTHHHHHHHHHHHTTC-STTCEEEEECCSHH-HHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHH
T ss_pred             HHHHHHHHHHHHHhCc-CCCCEEEEECCCCc-chhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHh
Confidence            4543444556666554 37999999999875 99999999999999888866532                    1 123


Q ss_pred             hcCCCCEEEeccCCCCc--cc--CCCcCCCcEEEEeeecC
Q 024306          176 ITSEADIVIAAAGVANL--VR--GSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       176 ~~~~aDiVIsAtg~p~~--i~--~~~~~~g~vViDv~~~~  211 (269)
                      .....|.+|.+++.+..  +.  -+.++++-.++-+|...
T Consensus        88 ~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1piwa2          88 YFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPE  127 (168)
T ss_dssp             SCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCC
T ss_pred             hhcccceEEEEecCCccchHHHHHHHhhccceEEEecccc
Confidence            34557888887775432  22  23566766666677543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.00017  Score=60.61  Aligned_cols=37  Identities=27%  Similarity=0.257  Sum_probs=34.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +|+||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   38 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRT   38 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            6899999999998878999999999999999999876

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.23  E-value=0.00017  Score=61.02  Aligned_cols=38  Identities=21%  Similarity=0.271  Sum_probs=35.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|+||.++|.|+++-+|+++|+.|+++|++|.++.++
T Consensus         1 f~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (251)
T d1vl8a_           1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRN   38 (251)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            47899999999998888999999999999999999776

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.21  E-value=0.00013  Score=59.30  Aligned_cols=53  Identities=23%  Similarity=0.359  Sum_probs=44.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC----------------------------CCCHhhhcCCCCEEEeccC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------------TKNPEQITSEADIVIAAAG  188 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------------t~~l~~~~~~aDiVIsAtg  188 (269)
                      ++|+|||+|.. |.++|..|++.|.+|++..|.                            +.++.+.+++||+||-|++
T Consensus         8 ~KI~ViGaG~w-GtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavP   86 (189)
T d1n1ea2           8 NKAVVFGSGAF-GTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP   86 (189)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSC
T ss_pred             ceEEEECCCHH-HHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCc
Confidence            57999999886 999999999999899998653                            1356788999999999998


Q ss_pred             CC
Q 024306          189 VA  190 (269)
Q Consensus       189 ~p  190 (269)
                      ..
T Consensus        87 s~   88 (189)
T d1n1ea2          87 TQ   88 (189)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.20  E-value=0.00021  Score=59.57  Aligned_cols=56  Identities=27%  Similarity=0.302  Sum_probs=45.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC----------------CC---HhhhcCCCCEEEeccCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT----------------KN---PEQITSEADIVIAAAGV  189 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t----------------~~---l~~~~~~aDiVIsAtg~  189 (269)
                      |+||+++|.|+++-+|+++++.|+++|++|.++.|+.                +.   +.+...+-|++|+..|.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnAG~   76 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGG   76 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEEEcchHHHHHHHHHHhCCCcEEEecccc
Confidence            6899999999987789999999999999999998762                11   23455667888877774

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00023  Score=59.87  Aligned_cols=38  Identities=24%  Similarity=0.261  Sum_probs=35.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..|+||+++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus         3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~   40 (244)
T d1pr9a_           3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRT   40 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            46899999999999888999999999999999999876

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.15  E-value=0.0003  Score=55.31  Aligned_cols=56  Identities=25%  Similarity=0.305  Sum_probs=44.0

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC--------------------------CCHhhhcCCCCEEEecc
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT--------------------------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t--------------------------~~l~~~~~~aDiVIsAt  187 (269)
                      +-+||.|||+|. ||.++|+.|+.++ +++.+++...                          .+.++.+++||+||.+.
T Consensus         6 k~~KI~IIGaG~-VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvita   84 (154)
T d1pzga1           6 RRKKVAMIGSGM-IGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA   84 (154)
T ss_dssp             CCCEEEEECCSH-HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             CCCcEEEECCCH-HHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEec
Confidence            568899999966 5999999988888 5788875431                          24557789999999999


Q ss_pred             CCCC
Q 024306          188 GVAN  191 (269)
Q Consensus       188 g~p~  191 (269)
                      |.|.
T Consensus        85 g~~~   88 (154)
T d1pzga1          85 GLTK   88 (154)
T ss_dssp             SCSS
T ss_pred             cccc
Confidence            8653

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.14  E-value=0.00032  Score=54.76  Aligned_cols=70  Identities=14%  Similarity=0.144  Sum_probs=54.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------CCHhhhcCCCCEEEeccCCCCc---ccCCCcC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------KNPEQITSEADIVIAAAGVANL---VRGSWLK  199 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------~~l~~~~~~aDiVIsAtg~p~~---i~~~~~~  199 (269)
                      |+.+||.|.+ |.+++..|.+.+.+|++++|+.               .+..+.++++|+||-++. |..   +- ..++
T Consensus         2 kIg~IG~G~m-G~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk-p~~~~~vl-~~l~   78 (152)
T d2ahra2           2 KIGIIGVGKM-ASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVL-KPLH   78 (152)
T ss_dssp             EEEEECCSHH-HHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHH-TTSC
T ss_pred             EEEEEeccHH-HHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc-hHhHHHHh-hhcc
Confidence            6899999997 9999999999999999998762               356678899999999985 332   21 2357


Q ss_pred             CCcEEEEeeec
Q 024306          200 PGAVVLDVGTC  210 (269)
Q Consensus       200 ~g~vViDv~~~  210 (269)
                      ++.+++++...
T Consensus        79 ~~~~iis~~ag   89 (152)
T d2ahra2          79 FKQPIISMAAG   89 (152)
T ss_dssp             CCSCEEECCTT
T ss_pred             cceeEeccccc
Confidence            78888887743

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.14  E-value=0.00022  Score=59.75  Aligned_cols=58  Identities=17%  Similarity=0.322  Sum_probs=47.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------------CHhhhcCCCCEEEeccC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------------NPEQITSEADIVIAAAG  188 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------------~l~~~~~~aDiVIsAtg  188 (269)
                      .+++||+++|.|+++-+|+++|+.|+++|++|.++.|...                       ...+....-|++|+.+|
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnnAG   82 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAG   82 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEECS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCceEEEEecCCHHHHHHHHHHHHHhcCCceEEEeeec
Confidence            4689999999999987899999999999999999987632                       11233456799998888


Q ss_pred             C
Q 024306          189 V  189 (269)
Q Consensus       189 ~  189 (269)
                      .
T Consensus        83 ~   83 (237)
T d1uzma1          83 L   83 (237)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.14  E-value=0.00035  Score=61.30  Aligned_cols=76  Identities=16%  Similarity=0.244  Sum_probs=60.2

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHh-CCC-EEEEEeCCC------------------CCHhhhcCCCCEEEeccCCCC-cc
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQR-HHA-TVSIVHALT------------------KNPEQITSEADIVIAAAGVAN-LV  193 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~-~ga-~Vti~~~~t------------------~~l~~~~~~aDiVIsAtg~p~-~i  193 (269)
                      .-+++.|||+|.- ++.-+.+|.. +.. +|.+.+|+.                  .+..+.+++|||||++|+... ++
T Consensus       124 ~~~~l~iiGaG~Q-A~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~P~~  202 (320)
T d1omoa_         124 NSSVFGFIGCGTQ-AYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRKPVV  202 (320)
T ss_dssp             TCCEEEEECCSHH-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSSCCB
T ss_pred             CccEEEEecCccc-HHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCccccc
Confidence            4578999999886 9988887765 333 799998762                  134577899999999999755 48


Q ss_pred             cCCCcCCCcEEEEeeecC
Q 024306          194 RGSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       194 ~~~~~~~g~vViDv~~~~  211 (269)
                      +.+|+++|+.|.=+|.+.
T Consensus       203 ~~~~l~~G~hv~~iGs~~  220 (320)
T d1omoa_         203 KAEWVEEGTHINAIGADG  220 (320)
T ss_dssp             CGGGCCTTCEEEECSCCS
T ss_pred             chhhcCCCCeEeecCCcc
Confidence            999999999999998653

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00015  Score=57.45  Aligned_cols=93  Identities=12%  Similarity=0.008  Sum_probs=60.4

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC-------------------CCCHhhh
Q 024306          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-------------------TKNPEQI  176 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-------------------t~~l~~~  176 (269)
                      +||.+.-+...|.+..---.|++|+|.|+||.||..+++++...|++|+++.++                   ++++.+.
T Consensus         9 ~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~   88 (179)
T d1qora2           9 SFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVER   88 (179)
T ss_dssp             HHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHH
Confidence            356666666666544332368999999999988999999999999998887544                   2333332


Q ss_pred             ----c--CCCCEEEeccCCCCc-ccCCCcCCCcEEEEee
Q 024306          177 ----T--SEADIVIAAAGVANL-VRGSWLKPGAVVLDVG  208 (269)
Q Consensus       177 ----~--~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~  208 (269)
                          +  +..|+|++++|.+.+ -..+.++++-.++-++
T Consensus        89 v~~~t~g~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          89 LKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             HHHHTTTCCEEEEEECSCGGGHHHHHHTEEEEEEEEECC
T ss_pred             HHHHhCCCCeEEEEeCccHHHHHHHHHHHhcCCeeeecc
Confidence                2  236888888875543 2333455544444444

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.08  E-value=0.00026  Score=54.93  Aligned_cols=36  Identities=19%  Similarity=0.357  Sum_probs=32.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      ..++||+|+|||+|.. |..-++.|.+.||.|+++..
T Consensus         9 ~~l~gkrvLViGgG~v-a~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1           9 HQLKDKRILLIGGGEV-GLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             ECCTTCEEEEEEESHH-HHHHHHHHGGGTCEEEEEEE
T ss_pred             eeeCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEeC
Confidence            3589999999999985 99999999999999999953

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.08  E-value=0.00012  Score=62.12  Aligned_cols=38  Identities=24%  Similarity=0.168  Sum_probs=35.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|+||+++|.|+++-+|+++++.|+++|++|.++.|+
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~   39 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRN   39 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            57899999999988888999999999999999999876

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00024  Score=59.29  Aligned_cols=43  Identities=23%  Similarity=0.277  Sum_probs=38.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhh
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQ  175 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~  175 (269)
                      +|+||.++|.|+++-+|+++++.|+++|++|.++.|+...+++
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~   44 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEA   44 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH
Confidence            6899999999999888999999999999999999987655443

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.05  E-value=0.00015  Score=57.67  Aligned_cols=94  Identities=13%  Similarity=0.118  Sum_probs=62.1

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC-------------------CCCHhhhc
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-------------------TKNPEQIT  177 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-------------------t~~l~~~~  177 (269)
                      ||.+.-+...|.+..---+|.+|+|.|+++.||..+++++...|++|.++.+.                   .+++.+.+
T Consensus         7 ~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v   86 (183)
T d1pqwa_           7 GVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEI   86 (183)
T ss_dssp             HHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHH
Confidence            44444455555444333368999999986667999999999999997766433                   23333332


Q ss_pred             ------CCCCEEEeccCCCCc-ccCCCcCCCcEEEEeeec
Q 024306          178 ------SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       178 ------~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~~  210 (269)
                            +.+|++++++|.+.+ ..-+.++++..++.+|..
T Consensus        87 ~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~G~~  126 (183)
T d1pqwa_          87 LELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKK  126 (183)
T ss_dssp             HHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCG
T ss_pred             HHHhCCCCEEEEEecccchHHHHHHHHhcCCCEEEEEccC
Confidence                  348999999986433 223467777778888743

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.04  E-value=0.00041  Score=57.06  Aligned_cols=93  Identities=17%  Similarity=0.250  Sum_probs=62.2

Q ss_pred             CCHHHHHHHHH----HhCC-CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------CHhhhc-C
Q 024306          118 CTPKGCIELLI----RSGV-EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQIT-S  178 (269)
Q Consensus       118 ~t~~g~~~~l~----~~~~-~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~-~  178 (269)
                      +|+.|+...++    +.+. +++||+|+|-|.|.+ |+.+++.|.++|++|+++.....             ...+.+ .
T Consensus         4 ~Ta~Gv~~~~~~~~~~~g~~~L~gk~v~IqG~G~V-G~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~~~~~~~~   82 (201)
T d1c1da1           4 TTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAV-GGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLST   82 (201)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGC
T ss_pred             chHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccCccccccc
Confidence            46677665554    4565 699999999999995 99999999999999999876421             223333 4


Q ss_pred             CCCEEEeccCCCCcccCCCcCC--CcEEEEeeecCC
Q 024306          179 EADIVIAAAGVANLVRGSWLKP--GAVVLDVGTCPV  212 (269)
Q Consensus       179 ~aDiVIsAtg~p~~i~~~~~~~--g~vViDv~~~~~  212 (269)
                      ++||++-+. ..+.|+.+..+.  -.+|+.-+-+|.
T Consensus        83 ~~DI~iPcA-~~~~I~~~~a~~i~ak~i~e~AN~p~  117 (201)
T d1c1da1          83 PCDVFAPCA-MGGVITTEVARTLDCSVVAGAANNVI  117 (201)
T ss_dssp             CCSEEEECS-CSCCBCHHHHHHCCCSEECCSCTTCB
T ss_pred             cceeeeccc-ccccccHHHHhhhhhheeeccCCCCc
Confidence            789988442 234555554322  345555554443

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.03  E-value=0.00031  Score=54.51  Aligned_cols=72  Identities=14%  Similarity=0.098  Sum_probs=53.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCCc---ccCCCcCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL---VRGSWLKP  200 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~~---i~~~~~~~  200 (269)
                      ||.|||.|.+ |.+++..|.+.|.+|+++++..              .+..+.++++|+||.+++.+..   +..-.-..
T Consensus         2 kIgiIG~G~m-G~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~~~~~~~   80 (152)
T d1i36a2           2 RVGFIGFGEV-AQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGRHV   80 (152)
T ss_dssp             EEEEESCSHH-HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTC
T ss_pred             EEEEEcHHHH-HHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHHHHHhhcccC
Confidence            6899999997 9999999999999999987663              2345788999999999985332   11001123


Q ss_pred             CcEEEEeeec
Q 024306          201 GAVVLDVGTC  210 (269)
Q Consensus       201 g~vViDv~~~  210 (269)
                      +.+++|+...
T Consensus        81 ~~~~id~st~   90 (152)
T d1i36a2          81 RGIYVDINNI   90 (152)
T ss_dssp             CSEEEECSCC
T ss_pred             CceeeccCcC
Confidence            6788898753

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.02  E-value=0.00068  Score=52.69  Aligned_cols=54  Identities=26%  Similarity=0.409  Sum_probs=42.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCC-----------------------CCCHhhhcCCCCEEEeccCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHAL-----------------------TKNPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~-----------------------t~~l~~~~~~aDiVIsAtg~p  190 (269)
                      .||+|||++|.||.++|+.|..++.  ++.+++..                       +.+..+.+++||+||-+.|.|
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~   79 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP   79 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcC
Confidence            3799999855679999999999984  57777543                       134567889999999888864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00057  Score=55.46  Aligned_cols=51  Identities=22%  Similarity=0.303  Sum_probs=43.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------------------------------CCH
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------------------------------KNP  173 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------------------------------~~l  173 (269)
                      |+|.|||+|-+ |+.+|..++..|.+|+++.+..                                           .++
T Consensus         5 kkvaViGaG~m-G~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~   83 (192)
T d1f0ya2           5 KHVTVIGGGLM-GAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA   83 (192)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred             EEEEEECcCHH-HHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchh
Confidence            78999999886 9999999999999999996541                                           244


Q ss_pred             hhhcCCCCEEEeccC
Q 024306          174 EQITSEADIVIAAAG  188 (269)
Q Consensus       174 ~~~~~~aDiVIsAtg  188 (269)
                      .+.+++||+||-|+.
T Consensus        84 ~~a~~~ad~ViEav~   98 (192)
T d1f0ya2          84 ASVVHSTDLVVEAIV   98 (192)
T ss_dssp             HHHTTSCSEEEECCC
T ss_pred             Hhhhcccceehhhcc
Confidence            567899999999876

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00031  Score=58.98  Aligned_cols=37  Identities=27%  Similarity=0.198  Sum_probs=34.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ||+||.++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~   37 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATS   37 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            6899999999998888999999999999999999876

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.00  E-value=0.00037  Score=55.28  Aligned_cols=91  Identities=14%  Similarity=0.158  Sum_probs=59.5

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-----------------CH---hhh
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-----------------NP---EQI  176 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-----------------~l---~~~  176 (269)
                      ||...-+...|++.+. -+|++|+|.|++|.||..+++.+..+|++|..+.++..                 +.   ...
T Consensus        10 ~~~~~TA~~al~~~~~-~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~   88 (171)
T d1iz0a2          10 PVSFLTAYLALKRAQA-RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKA   88 (171)
T ss_dssp             HHHHHHHHHHHHHTTC-CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC-CCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhc
Confidence            4444445566665433 48999999998777899999999999999877755421                 10   112


Q ss_pred             cCCCCEEEeccCCCCc-ccCCCcCCCcEEEEeee
Q 024306          177 TSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  209 (269)
Q Consensus       177 ~~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~  209 (269)
                      -+.+|+||+++|. .+ -.-+.++++-.++-+|.
T Consensus        89 ~~g~D~v~d~~G~-~~~~~~~~l~~~G~~v~~G~  121 (171)
T d1iz0a2          89 WGGLDLVLEVRGK-EVEESLGLLAHGGRLVYIGA  121 (171)
T ss_dssp             TTSEEEEEECSCT-THHHHHTTEEEEEEEEEC--
T ss_pred             cccccccccccch-hHHHHHHHHhcCCcEEEEeC
Confidence            3558899988773 22 12346777777777774

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.00  E-value=0.00024  Score=60.16  Aligned_cols=42  Identities=17%  Similarity=0.299  Sum_probs=37.2

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP  173 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l  173 (269)
                      .+++||+++|.|+++-+|+++|+.|+++|++|.++.++..++
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~   46 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADA   46 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTH
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            478999999999998889999999999999999998875433

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00052  Score=56.59  Aligned_cols=57  Identities=12%  Similarity=0.160  Sum_probs=47.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC---------------------CCHhhhcCCCCEEEeccCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT---------------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t---------------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      ..++|+|+|.|+.|.+|+.+++.|.++|.  +|+++.|+.                     +++.+.++.+|++|.++|.
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccc
Confidence            35789999999999999999999999884  799988752                     2355678899999998874

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00013  Score=57.82  Aligned_cols=94  Identities=24%  Similarity=0.188  Sum_probs=60.7

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC-------------------CCCHhhh
Q 024306          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-------------------TKNPEQI  176 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-------------------t~~l~~~  176 (269)
                      +||...-+...|.+..---+|.+|+|.|++|.||..+++.+..+|++|+++.+.                   +.++.+.
T Consensus         9 l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~   88 (174)
T d1yb5a2           9 IGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDK   88 (174)
T ss_dssp             THHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHH
Confidence            355545455555443222379999999986667999999999999998776543                   1223222


Q ss_pred             c------CCCCEEEeccCCCCc-ccCCCcCCCcEEEEeee
Q 024306          177 T------SEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  209 (269)
Q Consensus       177 ~------~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~  209 (269)
                      +      +..|+|++++|.+.+ -.-+.++++-.++.+|.
T Consensus        89 i~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~  128 (174)
T d1yb5a2          89 IKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGS  128 (174)
T ss_dssp             HHHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCC
T ss_pred             hhhhhccCCceEEeecccHHHHHHHHhccCCCCEEEEEec
Confidence            2      237888888885432 12245777777777774

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.96  E-value=0.00018  Score=61.04  Aligned_cols=38  Identities=24%  Similarity=0.144  Sum_probs=35.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|+||.++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   41 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN   41 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            57899999999998878999999999999999999876

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.93  E-value=0.00024  Score=60.29  Aligned_cols=37  Identities=19%  Similarity=0.305  Sum_probs=34.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +|+||.++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVL   38 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            6899999999999888999999999999999999876

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.92  E-value=0.00042  Score=54.34  Aligned_cols=73  Identities=18%  Similarity=0.203  Sum_probs=52.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCCC----------------CH-hhhcCCCCEEEeccCCCC---ccc
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALTK----------------NP-EQITSEADIVIAAAGVAN---LVR  194 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t~----------------~l-~~~~~~aDiVIsAtg~p~---~i~  194 (269)
                      |+|+|||.|.+ |.++|+.|.+.|.  +|+.++++.+                +. .....++|+||-|++...   .+.
T Consensus         2 k~I~IIG~G~m-G~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl~   80 (171)
T d2g5ca2           2 QNVLIVGVGFM-GGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAK   80 (171)
T ss_dssp             CEEEEESCSHH-HHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHH
T ss_pred             CEEEEEccCHH-HHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhhhhh
Confidence            57999999886 9999999999985  6887876521                11 223457899999998422   221


Q ss_pred             --CCCcCCCcEEEEeeec
Q 024306          195 --GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       195 --~~~~~~g~vViDv~~~  210 (269)
                        .+.++++++|+|++..
T Consensus        81 ~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          81 KLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             HHHHHSCTTCEEEECCSC
T ss_pred             hhhccccccccccccccc
Confidence              2346889999999964

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.92  E-value=0.00035  Score=55.61  Aligned_cols=74  Identities=15%  Similarity=0.170  Sum_probs=56.6

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------------------CHhhhcCCCCEEEeccCCCCc-
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------------NPEQITSEADIVIAAAGVANL-  192 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------------~l~~~~~~aDiVIsAtg~p~~-  192 (269)
                      -++|-+||-|.+ |.++|..|.+.|.+|++++|+.+                      ++.+.+..+|++|........ 
T Consensus         2 ~~nIg~IGlG~M-G~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v   80 (176)
T d2pgda2           2 QADIALIGLAVM-GQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAV   80 (176)
T ss_dssp             CBSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHH
T ss_pred             CCcEEEEeEhHH-HHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHH
Confidence            368999999987 99999999999999999998631                      233567788999987765431 


Q ss_pred             --cc---CCCcCCCcEEEEeeec
Q 024306          193 --VR---GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       193 --i~---~~~~~~g~vViDv~~~  210 (269)
                        +.   .+.+++|.++||+...
T Consensus        81 ~~v~~~l~~~~~~g~iiid~sT~  103 (176)
T d2pgda2          81 DNFIEKLVPLLDIGDIIIDGGNS  103 (176)
T ss_dssp             HHHHHHHHHHCCTTCEEEECSCC
T ss_pred             HHHHHHHHhccccCcEEEecCcc
Confidence              11   1245789999999864

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.90  E-value=0.00061  Score=57.60  Aligned_cols=37  Identities=24%  Similarity=0.416  Sum_probs=34.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .|+||.++|.|+++-+|+++|+.|+++|++|.++.++
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   38 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMN   38 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999998878999999999999999999876

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.88  E-value=0.00059  Score=54.74  Aligned_cols=52  Identities=21%  Similarity=0.150  Sum_probs=41.1

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      |++-.++.|.+.+..-+|.+|+|-|++|-||..+.+++...|++|+...++.
T Consensus        15 TA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~   66 (176)
T d1xa0a2          15 TAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKA   66 (176)
T ss_dssp             HHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred             HHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCch
Confidence            4444445566667777899999999988899999999999999977776553

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.87  E-value=0.00053  Score=51.65  Aligned_cols=52  Identities=27%  Similarity=0.189  Sum_probs=40.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------CC-Hhh-hcCCCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------KN-PEQ-ITSEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------~~-l~~-~~~~aDiVIsAtg~  189 (269)
                      |+++|+|.|.. |+.++..|.++|..|+++....                    ++ +.+ -+.+||.+|.+++.
T Consensus         1 k~~iIiG~G~~-G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~   74 (134)
T d2hmva1           1 KQFAVIGLGRF-GGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGA   74 (134)
T ss_dssp             CCEEEECCSHH-HHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCS
T ss_pred             CEEEEECCCHH-HHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCc
Confidence            68999999886 9999999999999999996542                    11 222 26788888888774

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=96.87  E-value=0.00065  Score=57.15  Aligned_cols=37  Identities=22%  Similarity=0.310  Sum_probs=34.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      |+||.++|.|+++-+|+++|+.|+++|++|.++.++.
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~   39 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRP   39 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            7999999999888889999999999999999998763

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.86  E-value=0.00024  Score=60.89  Aligned_cols=38  Identities=24%  Similarity=0.214  Sum_probs=35.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+|+||+++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~   58 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRK   58 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            46899999999988878999999999999999999876

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.86  E-value=0.00056  Score=57.32  Aligned_cols=37  Identities=16%  Similarity=0.226  Sum_probs=33.9

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .|+||+++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~   38 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIE   38 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3789999999988777999999999999999999876

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.86  E-value=0.00068  Score=57.47  Aligned_cols=38  Identities=21%  Similarity=0.276  Sum_probs=34.8

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+|+||.++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~   40 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRS   40 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            37899999999988888999999999999999999775

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.85  E-value=0.00036  Score=54.23  Aligned_cols=77  Identities=17%  Similarity=0.147  Sum_probs=54.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC---CEEEEEeCCCC---------------C-HhhhcCCCCEEEeccCCCC--cccC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHH---ATVSIVHALTK---------------N-PEQITSEADIVIAAAGVAN--LVRG  195 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~g---a~Vti~~~~t~---------------~-l~~~~~~aDiVIsAtg~p~--~i~~  195 (269)
                      -+|.|+|++|.||+-+.+.|.+++   .++..+.+.+.               + -.+...++|+++.+++...  .+.+
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~~~~   82 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHAE   82 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchhhhhcc
Confidence            479999999999999999998654   35666544321               1 1244678999999987421  2334


Q ss_pred             CCcCCCcEEEEeeecCCC
Q 024306          196 SWLKPGAVVLDVGTCPVD  213 (269)
Q Consensus       196 ~~~~~g~vViDv~~~~~~  213 (269)
                      ...+.|..|||.+.....
T Consensus        83 ~~~~~g~~VID~Ss~fR~  100 (144)
T d2hjsa1          83 RARAAGCSVIDLSGALEP  100 (144)
T ss_dssp             HHHHTTCEEEETTCTTTT
T ss_pred             ccccCCceEEeechhhcc
Confidence            456789999999977653

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.85  E-value=0.00055  Score=58.07  Aligned_cols=38  Identities=26%  Similarity=0.288  Sum_probs=34.4

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+|+||.++|.|+++-+|+++++.|+++|++|.++.++
T Consensus        14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~   51 (272)
T d1g0oa_          14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYAN   51 (272)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            45899999999988888999999999999999998665

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=96.85  E-value=0.00065  Score=54.55  Aligned_cols=94  Identities=18%  Similarity=0.126  Sum_probs=60.7

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEE-cCCcccHHHHHHHHHhCCCEEEEEeCCCCCHh--------------------
Q 024306          116 IPCTPKGCIELLIRSGVEIMGKNAVVI-GRSNIVGLPTSLLLQRHHATVSIVHALTKNPE--------------------  174 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l~gk~v~Vi-G~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~--------------------  174 (269)
                      +||.+.-+...|.+..---.|.+++|+ |++|.||..+.+++..+|++|..+-+......                    
T Consensus         9 l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~   88 (189)
T d1gu7a2           9 ISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQN   88 (189)
T ss_dssp             CTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHH
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEecccc
Confidence            466666677777665544468899998 56566799999999999999776654432211                    


Q ss_pred             ----------hh----cCCCCEEEeccCCCCc-ccCCCcCCCcEEEEeee
Q 024306          175 ----------QI----TSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  209 (269)
Q Consensus       175 ----------~~----~~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~  209 (269)
                                +.    =..+|++++++|.+.+ -.-+.++++-.++.+|.
T Consensus        89 ~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~  138 (189)
T d1gu7a2          89 NSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGG  138 (189)
T ss_dssp             HCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCC
T ss_pred             chhHHHHHHHHHHhhccCCceEEEECCCcchhhhhhhhhcCCcEEEEECC
Confidence                      00    1236777777775432 12245677767777763

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00067  Score=52.46  Aligned_cols=70  Identities=16%  Similarity=0.159  Sum_probs=52.2

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---------------------CHhhhcCCCCEEEeccCCCCc---c
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---------------------NPEQITSEADIVIAAAGVANL---V  193 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---------------------~l~~~~~~aDiVIsAtg~p~~---i  193 (269)
                      ||+|||+|.+ |..++..|++.|.+|+++.|...                     +..+.+..+|+||.++..+..   +
T Consensus         2 kI~IiGaG~i-G~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~~~~~~   80 (167)
T d1ks9a2           2 KITVLGCGAL-GQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAV   80 (167)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHHH
T ss_pred             EEEEECcCHH-HHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccchHHHH
Confidence            7999999775 99999999999999999977631                     224567889999999986542   1


Q ss_pred             c--CCCcCCCcEEEEee
Q 024306          194 R--GSWLKPGAVVLDVG  208 (269)
Q Consensus       194 ~--~~~~~~g~vViDv~  208 (269)
                      .  ..++.+++.|+.+.
T Consensus        81 ~~l~~~~~~~~~Iv~~q   97 (167)
T d1ks9a2          81 KSLASTLPVTTPILLIH   97 (167)
T ss_dssp             HHHHTTSCTTSCEEEEC
T ss_pred             HhhccccCcccEEeecc
Confidence            1  23456677776653

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.81  E-value=0.00057  Score=54.70  Aligned_cols=52  Identities=17%  Similarity=0.233  Sum_probs=43.9

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC-----------------------------CCCHhhhcCCCCEEEeccC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-----------------------------TKNPEQITSEADIVIAAAG  188 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-----------------------------t~~l~~~~~~aDiVIsAtg  188 (269)
                      +|.|||+|.. |.++|..|++.|.+|++..|.                             +.++.+.+++||+||.|++
T Consensus         2 kI~ViGaG~~-GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           2 IVSILGAGAM-GSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             EEEEESCCHH-HHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             EEEEECCCHH-HHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            6999999886 999999999999999998552                             1345678999999999998


Q ss_pred             CC
Q 024306          189 VA  190 (269)
Q Consensus       189 ~p  190 (269)
                      ..
T Consensus        81 s~   82 (180)
T d1txga2          81 TD   82 (180)
T ss_dssp             GG
T ss_pred             hh
Confidence            53

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00071  Score=57.03  Aligned_cols=38  Identities=24%  Similarity=0.181  Sum_probs=34.8

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      -.|+||.++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKD   39 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            35899999999998878999999999999999999876

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.81  E-value=0.00022  Score=60.56  Aligned_cols=39  Identities=13%  Similarity=0.095  Sum_probs=35.9

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++|+||+++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus         3 ~F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~   41 (259)
T d1xq1a_           3 RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARN   41 (259)
T ss_dssp             TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            368999999999998888999999999999999999876

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=96.79  E-value=0.0016  Score=51.55  Aligned_cols=52  Identities=17%  Similarity=0.125  Sum_probs=43.6

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      |+.-.+..|.+.+...+|.+|+|-|++|.||..++++....||+|+...++.
T Consensus         7 TA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~   58 (167)
T d1tt7a2           7 TAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNR   58 (167)
T ss_dssp             HHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCH
Confidence            5666667788888877888999999988889999999999999988776654

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00042  Score=58.20  Aligned_cols=37  Identities=19%  Similarity=0.239  Sum_probs=34.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      |+||+++|.|+++-+|+++++.|+++|++|.++.|+.
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            8999999999999899999999999999999998873

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.79  E-value=0.00066  Score=57.05  Aligned_cols=37  Identities=24%  Similarity=0.246  Sum_probs=34.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .|+||.++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~   39 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDIL   39 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4799999999998878999999999999999999876

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.78  E-value=0.00086  Score=52.20  Aligned_cols=56  Identities=25%  Similarity=0.338  Sum_probs=43.2

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHhhhcCCCCEEEeccC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAAAG  188 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t------------------------~~l~~~~~~aDiVIsAtg  188 (269)
                      .++||.|||+|. ||..+|+.|+.++-  ++.+++...                        ..-.+.+++||+||.++|
T Consensus         5 ~~~KI~IiGaG~-vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag   83 (148)
T d1ldna1           5 GGARVVVIGAGF-VGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG   83 (148)
T ss_dssp             TSCEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred             CCCeEEEECcCH-HHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecc
Confidence            578999999977 59999999998883  688886431                        122467899999999888


Q ss_pred             CCC
Q 024306          189 VAN  191 (269)
Q Consensus       189 ~p~  191 (269)
                      .|.
T Consensus        84 ~~~   86 (148)
T d1ldna1          84 ANQ   86 (148)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            643

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.00055  Score=57.82  Aligned_cols=38  Identities=18%  Similarity=0.292  Sum_probs=34.9

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..|+||.++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   44 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN   44 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            45899999999998888999999999999999999876

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.75  E-value=0.00078  Score=56.68  Aligned_cols=40  Identities=18%  Similarity=0.076  Sum_probs=35.9

Q ss_pred             hCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          130 SGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       130 ~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +-+.++||.++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus         4 ~~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~   43 (251)
T d2c07a1           4 YYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRT   43 (251)
T ss_dssp             CCCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESS
T ss_pred             cccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            3467899999999998778999999999999999999876

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.75  E-value=0.0013  Score=51.11  Aligned_cols=54  Identities=30%  Similarity=0.455  Sum_probs=41.1

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-----------------------------CCHhhhcCCCCEEEec
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-----------------------------KNPEQITSEADIVIAA  186 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-----------------------------~~l~~~~~~aDiVIsA  186 (269)
                      ||.|||++|.||.++|+.|+.++.  ++.+++...                             .+..+.+++||+||-+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVit   81 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVIIT   81 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEEC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEEe
Confidence            699999856679999999999983  688875431                             1224678899999999


Q ss_pred             cCCCC
Q 024306          187 AGVAN  191 (269)
Q Consensus       187 tg~p~  191 (269)
                      .|.|.
T Consensus        82 AG~~~   86 (145)
T d1hyea1          82 SGVPR   86 (145)
T ss_dssp             CSCCC
T ss_pred             ccccc
Confidence            88643

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.75  E-value=0.00057  Score=57.65  Aligned_cols=36  Identities=25%  Similarity=0.301  Sum_probs=33.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      |+||+++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADIN   38 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            789999999998888999999999999999999876

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.73  E-value=0.0004  Score=58.16  Aligned_cols=37  Identities=24%  Similarity=0.321  Sum_probs=34.4

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .|+||+++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~   38 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDRE   38 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999999988999999999999999999876

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.73  E-value=0.0013  Score=51.46  Aligned_cols=95  Identities=15%  Similarity=0.130  Sum_probs=65.2

Q ss_pred             cccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHh
Q 024306          115 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPE  174 (269)
Q Consensus       115 ~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l~  174 (269)
                      .+||....+...+++.++ -.|.+|+|+|++|.+|..+++++...|+ +|+++.++.                   .+..
T Consensus         8 ~l~c~~~Ta~~al~~~~~-~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~   86 (170)
T d1jvba2           8 PLTCSGITTYRAVRKASL-DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPL   86 (170)
T ss_dssp             GGGTHHHHHHHHHHHTTC-CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHH
T ss_pred             HHHHHHHHHHHHHHHhCC-CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHH
Confidence            357766656666766544 4688999999766679999999998895 788885441                   2222


Q ss_pred             hhc------CCCCEEEeccCCCCccc--CCCcCCCcEEEEeeec
Q 024306          175 QIT------SEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTC  210 (269)
Q Consensus       175 ~~~------~~aDiVIsAtg~p~~i~--~~~~~~g~vViDv~~~  210 (269)
                      +.+      +.+|++|.++|.+..++  -++++++-.++=+|..
T Consensus        87 ~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~  130 (170)
T d1jvba2          87 AEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLF  130 (170)
T ss_dssp             HHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSS
T ss_pred             HHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEeccc
Confidence            221      34799999998765433  3467887777777754

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.72  E-value=0.00067  Score=56.85  Aligned_cols=37  Identities=27%  Similarity=0.477  Sum_probs=33.0

Q ss_pred             CCCccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|+||+++|.|++   |. |+++|+.|+++|++|.++.+.
T Consensus         4 ~~L~gK~alITGas~~~GI-G~aiA~~la~~Ga~V~i~~~~   43 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSL-GFAIAAKLKEAGAEVALSYQA   43 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSH-HHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCCCEEEEECCCCCchH-HHHHHHHHHHCCCEEEEEeCc
Confidence            58999999999986   55 999999999999999888665

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.72  E-value=0.001  Score=55.81  Aligned_cols=37  Identities=22%  Similarity=0.274  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .|+||.++|.|+++-+|+++|+.|+++|++|.++.++
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~   38 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLV   38 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999998878999999999999999999876

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.72  E-value=0.00088  Score=56.48  Aligned_cols=36  Identities=28%  Similarity=0.298  Sum_probs=33.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      |+||.++|.|+++-+|+++|..|+++|++|.++.++
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~   37 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFG   37 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCS
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            689999999998888999999999999999999775

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=96.71  E-value=0.0016  Score=54.43  Aligned_cols=94  Identities=15%  Similarity=0.152  Sum_probs=61.8

Q ss_pred             cCCHHHHHHHHHH----h--CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------CHh-h
Q 024306          117 PCTPKGCIELLIR----S--GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------NPE-Q  175 (269)
Q Consensus       117 p~t~~g~~~~l~~----~--~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------~l~-~  175 (269)
                      +.|++|+...++.    .  ..+++||+|+|-|.|.+ |..+++.|.++||+|+++..+..              +.. -
T Consensus        14 ~aTg~GV~~~~~~~~~~~~g~~~l~g~~v~IqG~GnV-G~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~~~   92 (230)
T d1leha1          14 PVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNV-AKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAI   92 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGT
T ss_pred             cchHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCccc
Confidence            5688887776543    2  45799999999999985 99999999999999988865421              111 2


Q ss_pred             hcCCCCEEEeccCCCCcccCCCcCC--CcEEEEeeecCC
Q 024306          176 ITSEADIVIAAAGVANLVRGSWLKP--GAVVLDVGTCPV  212 (269)
Q Consensus       176 ~~~~aDiVIsAtg~p~~i~~~~~~~--g~vViDv~~~~~  212 (269)
                      .-..+||++=+.- .+.|+++.+..  -.+|+-.+-|+.
T Consensus        93 ~~~~cDIl~PcA~-~~~I~~~~~~~l~ak~Ive~ANn~~  130 (230)
T d1leha1          93 YGVTCDIFAPCAL-GAVLNDFTIPQLKAKVIAGSADNQL  130 (230)
T ss_dssp             TTCCCSEEEECSC-SCCBSTTHHHHCCCSEECCSCSCCB
T ss_pred             ccccccEeccccc-ccccChHHhhccCccEEEecccCCC
Confidence            2456899884332 23455443321  335555554544

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.71  E-value=0.0014  Score=51.12  Aligned_cols=53  Identities=13%  Similarity=0.096  Sum_probs=41.9

Q ss_pred             cccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          115 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       115 ~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      -+||...-+...+++.+. -.|.+|+|+|+|++ |..+++++..+|++|+++.++
T Consensus         8 ~l~ca~~Ta~~al~~~~~-~~g~~VlV~GaG~v-G~~~~~~ak~~G~~Vi~~~~~   60 (166)
T d1llua2           8 PILCAGVTVYKGLKQTNA-RPGQWVAISGIGGL-GHVAVQYARAMGLHVAAIDID   60 (166)
T ss_dssp             GGGTHHHHHHHHHHHHTC-CTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESC
T ss_pred             HHHHHHHHHHHHHHHhCC-CCCCEEEEeecccc-HHHHHHHHHHcCCccceecch
Confidence            357866666667766554 36899999999775 999999999999998888665

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.70  E-value=0.00096  Score=51.87  Aligned_cols=55  Identities=20%  Similarity=0.344  Sum_probs=42.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCCC------------------------CCHhhhcCCCCEEEeccC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHALT------------------------KNPEQITSEADIVIAAAG  188 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~t------------------------~~l~~~~~~aDiVIsAtg  188 (269)
                      +.+||.|||+|. ||.++|+.|+.+|  .++.++++..                        .+ .+.+++||+||.++|
T Consensus         4 ~~~KI~IIGaG~-VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d-~~~~~~adivvitag   81 (146)
T d1ez4a1           4 NHQKVVLVGDGA-VGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGE-YSDCKDADLVVITAG   81 (146)
T ss_dssp             TBCEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECC-GGGGTTCSEEEECCC
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeecc-HHHhccccEEEEecc
Confidence            457899999977 5999999999988  3799986541                        12 356789999999988


Q ss_pred             CCC
Q 024306          189 VAN  191 (269)
Q Consensus       189 ~p~  191 (269)
                      .|.
T Consensus        82 ~~~   84 (146)
T d1ez4a1          82 APQ   84 (146)
T ss_dssp             C--
T ss_pred             ccc
Confidence            653

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.70  E-value=0.0017  Score=50.71  Aligned_cols=55  Identities=22%  Similarity=0.332  Sum_probs=42.8

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------------CCHhhhcCCCCEEEeccCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      ..||.|||+|. ||.+++.+|..++. ++.+++...                         .+..+.+++||+||.+.|.
T Consensus         3 ~~KI~IIGaG~-VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~   81 (150)
T d1t2da1           3 KAKIVLVGSGM-IGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGF   81 (150)
T ss_dssp             CCEEEEECCSH-HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSC
T ss_pred             CCeEEEECCCH-HHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEeccc
Confidence            46899999976 59999999988884 677776431                         1335778999999999996


Q ss_pred             CC
Q 024306          190 AN  191 (269)
Q Consensus       190 p~  191 (269)
                      |.
T Consensus        82 ~~   83 (150)
T d1t2da1          82 TK   83 (150)
T ss_dssp             SS
T ss_pred             cc
Confidence            54

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.70  E-value=0.00084  Score=56.73  Aligned_cols=36  Identities=19%  Similarity=0.287  Sum_probs=33.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      |+||.++|.|+++-+|+++++.|+++|++|.++.++
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   37 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVS   37 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            789999999998878999999999999999999875

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.69  E-value=0.00071  Score=57.49  Aligned_cols=37  Identities=19%  Similarity=0.258  Sum_probs=33.1

Q ss_pred             CCCCccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeC
Q 024306          131 GVEIMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       131 ~~~l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      ..+|+||+++|.|+|   |+ |+++|+.|+++||+|.++.+
T Consensus         3 ~~~L~gK~alVTGass~~GI-G~aiA~~la~~Ga~Vvi~~~   42 (297)
T d1d7oa_           3 PIDLRGKRAFIAGIADDNGY-GWAVAKSLAAAGAEILVGTW   42 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSH-HHHHHHHHHHTTCEEEEEEE
T ss_pred             CcCCCCCEEEEECCCCCchH-HHHHHHHHHHCCCEEEEEeC
Confidence            468999999999986   55 99999999999999998865

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.0013  Score=52.79  Aligned_cols=36  Identities=22%  Similarity=0.305  Sum_probs=33.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..++|+|+|||+|-+ |..+|..|+++|.+|+++.+.
T Consensus        40 ~~~~k~V~IIGaGPA-GL~AA~~la~~G~~Vtl~E~~   75 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPA-GLAFAINAAARGHQVTLFDAH   75 (179)
T ss_dssp             CSSCCEEEEECCSHH-HHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCCcEEEEECccHH-HHHHHHHHHhhccceEEEecc
Confidence            357899999999998 999999999999999999765

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.69  E-value=0.00079  Score=53.58  Aligned_cols=93  Identities=14%  Similarity=-0.024  Sum_probs=60.8

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CCHh---
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KNPE---  174 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~l~---  174 (269)
                      +|+..-+...|.+..---+|.+|+|.|++|.||..+++.....||+|+...++.                   .+..   
T Consensus        11 g~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~   90 (182)
T d1v3va2          11 GMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEA   90 (182)
T ss_dssp             SHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHH
T ss_pred             hhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHH
Confidence            444444555555443334799999999999899999999999999988775431                   1111   


Q ss_pred             -hh--cCCCCEEEeccCCCCc-ccCCCcCCCcEEEEeee
Q 024306          175 -QI--TSEADIVIAAAGVANL-VRGSWLKPGAVVLDVGT  209 (269)
Q Consensus       175 -~~--~~~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~~  209 (269)
                       +.  -+..|+|++++|.+.+ -.-+.++++-.++-+|.
T Consensus        91 ~~~~~~~Gvd~v~D~vG~~~~~~~~~~l~~~G~~v~~G~  129 (182)
T d1v3va2          91 LKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGA  129 (182)
T ss_dssp             HHHHCTTCEEEEEESSCHHHHHHHGGGEEEEEEEEECCC
T ss_pred             HHHhhcCCCceeEEecCchhhhhhhhhccCCCeEEeecc
Confidence             11  1447888888885432 23445677666666663

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.68  E-value=0.00054  Score=54.34  Aligned_cols=94  Identities=16%  Similarity=0.170  Sum_probs=61.1

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCC-------------------CCCHhh
Q 024306          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL-------------------TKNPEQ  175 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~-------------------t~~l~~  175 (269)
                      ++|........+.+..---.|.+|+|+|+|++ |..+++++...|+. |.++.++                   .++..+
T Consensus         9 l~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~i-G~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~   87 (174)
T d1f8fa2           9 LGCGIQTGAGACINALKVTPASSFVTWGAGAV-GLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVA   87 (174)
T ss_dssp             GGTHHHHHHHHHHTTTCCCTTCEEEEESCSHH-HHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHH
T ss_pred             HhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHH-HhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHH
Confidence            46654444445444333357999999999875 99999999999985 5555433                   223333


Q ss_pred             hcC-----CCCEEEeccCCCCcc--cCCCcCCCcEEEEeeec
Q 024306          176 ITS-----EADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       176 ~~~-----~aDiVIsAtg~p~~i--~~~~~~~g~vViDv~~~  210 (269)
                      .++     .+|+||.++|.+..+  ..+.++++-.++=+|..
T Consensus        88 ~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~  129 (174)
T d1f8fa2          88 AIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAP  129 (174)
T ss_dssp             HHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCC
T ss_pred             HHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeec
Confidence            322     379999999986543  23457777666666654

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.68  E-value=0.0022  Score=56.62  Aligned_cols=75  Identities=13%  Similarity=0.180  Sum_probs=58.9

Q ss_pred             ccceEEEEcCCcccHHHHHHHHH-hCCC-EEEEEeCCC---------------------CCHhhhcCCCCEEEeccCCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQ-RHHA-TVSIVHALT---------------------KNPEQITSEADIVIAAAGVAN  191 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~-~~ga-~Vti~~~~t---------------------~~l~~~~~~aDiVIsAtg~p~  191 (269)
                      .-+++.|||+|.- ++.-+.++. -++. +|.+.+++.                     .++++.+++||||+++|..+.
T Consensus       127 da~~l~iiG~G~Q-A~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~s  205 (340)
T d1x7da_         127 NARKMALIGNGAQ-SEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA  205 (340)
T ss_dssp             TCCEEEEECCSTT-HHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS
T ss_pred             CCceEEEEcccHH-HHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccCC
Confidence            4578999999986 887776653 4454 699987751                     467889999999999886432


Q ss_pred             ---cccCCCcCCCcEEEEeeec
Q 024306          192 ---LVRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       192 ---~i~~~~~~~g~vViDv~~~  210 (269)
                         +++.+|++||+.|.=+|.+
T Consensus       206 ~~Pv~~~~~l~pG~hI~aiGs~  227 (340)
T d1x7da_         206 YATIITPDMLEPGMHLNAVGGD  227 (340)
T ss_dssp             EEEEECGGGCCTTCEEEECSCC
T ss_pred             CCcccchhhcCCCCEEeecccc
Confidence               5899999999999888864

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00094  Score=57.90  Aligned_cols=92  Identities=13%  Similarity=0.198  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC----CC-------EEEEEeCC------------------
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HA-------TVSIVHAL------------------  169 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~----ga-------~Vti~~~~------------------  169 (269)
                      +-.|++..++-.+.++++.++++.|+|.+ |..++.+|...    |.       .+++++++                  
T Consensus         8 ~lAglinAlki~gk~l~d~kiv~~GAGsA-g~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~   86 (294)
T d1pj3a1           8 ALAGLLAAQKVISKPISEHKILFLGAGEA-ALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPF   86 (294)
T ss_dssp             HHHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGG
T ss_pred             HHHHHHHHHHHhCCCHHHcEEEEECccHH-HHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHh
Confidence            34678889999999999999999999998 99988886533    32       38998654                  


Q ss_pred             --------CCCHhhhcC--CCCEEEeccCCCCcccCCCcC------CCcEEEEeeecCC
Q 024306          170 --------TKNPEQITS--EADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  212 (269)
Q Consensus       170 --------t~~l~~~~~--~aDiVIsAtg~p~~i~~~~~~------~g~vViDv~~~~~  212 (269)
                              ..+|.+.++  +.|++|-..|.++.+++++++      +.-+|+=++ ||.
T Consensus        87 a~~~~~~~~~~L~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~~PIIFaLS-NPt  144 (294)
T d1pj3a1          87 THSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALS-NPT  144 (294)
T ss_dssp             CBCCCSSCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             hccccccchhHHHHHHHhcCCceEEEecCCCCcCCHHHHHHHHhcCCCcEEEEcc-CCC
Confidence                    013555554  789999999988899999885      677888887 663

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.66  E-value=0.00022  Score=55.22  Aligned_cols=71  Identities=11%  Similarity=0.000  Sum_probs=45.2

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccCCCCc--ccCCCcCCCc
Q 024306          139 AVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAGVANL--VRGSWLKPGA  202 (269)
Q Consensus       139 v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg~p~~--i~~~~~~~g~  202 (269)
                      +-+||.|.+ |++++..|.+.+..+.|++|+.              .+..+.++++|+||.+++-...  +-.+.-+++.
T Consensus         2 IgfIG~G~m-g~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~i~~v~~~l~~~~~   80 (153)
T d2i76a2           2 LNFVGTGTL-TRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYIKTVANHLNLGDA   80 (153)
T ss_dssp             CEEESCCHH-HHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTTHHHHHTTTCCSSC
T ss_pred             EEEEeCcHH-HHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccchhhhHHHhhhcccce
Confidence            357999997 9999998866443356887762              2456778999999999974332  3333335788


Q ss_pred             EEEEeeec
Q 024306          203 VVLDVGTC  210 (269)
Q Consensus       203 vViDv~~~  210 (269)
                      +++|+.-.
T Consensus        81 ivi~~s~~   88 (153)
T d2i76a2          81 VLVHCSGF   88 (153)
T ss_dssp             CEEECCSS
T ss_pred             eeeecccc
Confidence            99998743

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0025  Score=49.90  Aligned_cols=86  Identities=23%  Similarity=0.380  Sum_probs=60.1

Q ss_pred             HHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC-------------------CCHhhh-------
Q 024306          124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT-------------------KNPEQI-------  176 (269)
Q Consensus       124 ~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t-------------------~~l~~~-------  176 (269)
                      +..+++.++ -.|.+|+|+|+|+. |..+++.+..+|+ +|+++.+..                   .+..+.       
T Consensus        16 ~~a~~~~~~-~~gd~VlI~G~G~i-G~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~   93 (171)
T d1pl8a2          16 IHACRRGGV-TLGHKVLVCGAGPI-GMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQ   93 (171)
T ss_dssp             HHHHHHHTC-CTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhCC-CCCCEEEEECCCcc-HHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCccccccccccccccccccccc
Confidence            455666554 36889999999775 9999999999999 688886542                   122111       


Q ss_pred             -cCCCCEEEeccCCCCccc--CCCcCCCcEEEEeeecC
Q 024306          177 -TSEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       177 -~~~aDiVIsAtg~p~~i~--~~~~~~g~vViDv~~~~  211 (269)
                       =..+|+||.++|.+..+.  -++++++-.++=+|...
T Consensus        94 ~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2          94 LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             HTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCC
T ss_pred             CCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCC
Confidence             135899999999876443  34677876666677654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.64  E-value=0.0015  Score=52.90  Aligned_cols=52  Identities=15%  Similarity=0.177  Sum_probs=43.6

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC----------------------------------CCCHhhhcCCCCEE
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL----------------------------------TKNPEQITSEADIV  183 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~----------------------------------t~~l~~~~~~aDiV  183 (269)
                      +|.|||.|-. |.|+|..|+++|.+|+..+..                                  +.++.+.+++||++
T Consensus         2 kI~ViGlG~v-Gl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           2 RISIFGLGYV-GAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             EEEEECCSTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             EEEEECCCHh-HHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            6899999885 999999999999999988542                                  13456778899999


Q ss_pred             EeccCCC
Q 024306          184 IAAAGVA  190 (269)
Q Consensus       184 IsAtg~p  190 (269)
                      +.+++.|
T Consensus        81 ~i~VpTP   87 (202)
T d1mv8a2          81 FICVGTP   87 (202)
T ss_dssp             EECCCCC
T ss_pred             EEecCcc
Confidence            9999876

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.64  E-value=0.00071  Score=57.03  Aligned_cols=36  Identities=33%  Similarity=0.352  Sum_probs=33.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      |+||.++|.|+++-+|+++|+.|+++|++|.++.++
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~   39 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDIN   39 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            799999999988878999999999999999999775

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00099  Score=56.01  Aligned_cols=36  Identities=28%  Similarity=0.260  Sum_probs=33.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++||.++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~   36 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWN   36 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            479999999998878999999999999999999875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.63  E-value=0.00077  Score=54.83  Aligned_cols=33  Identities=30%  Similarity=0.401  Sum_probs=30.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ||||+|||+|-+ |..+|..|+++|.+|+|+.+.
T Consensus         1 ~KkV~IIGaG~a-GL~aA~~La~~G~~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVS-GLAAAYKLKIHGLNVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCSHH-HHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECcCHH-HHHHHHHHHhCCCCEEEEeCC
Confidence            699999999998 999999999999999999764

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.61  E-value=0.00082  Score=56.51  Aligned_cols=36  Identities=25%  Similarity=0.285  Sum_probs=33.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      |+||.++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~   39 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRH   39 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            799999999988878999999999999999999775

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.60  E-value=0.0021  Score=50.15  Aligned_cols=86  Identities=21%  Similarity=0.291  Sum_probs=60.8

Q ss_pred             HHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------CCHh---hhc--
Q 024306          124 IELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPE---QIT--  177 (269)
Q Consensus       124 ~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------~~l~---~~~--  177 (269)
                      ++.+++.++ -.|.+|+|+|+|++ |..+++.+..+|++|+++.++.                     .+..   +.+  
T Consensus        16 ~~a~~~~~~-~~g~~vlV~G~G~v-G~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~   93 (170)
T d1e3ja2          16 VHACRRAGV-QLGTTVLVIGAGPI-GLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRS   93 (170)
T ss_dssp             HHHHHHHTC-CTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHH
T ss_pred             HHHHHHhCC-CCCCEEEEEccccc-chhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhc
Confidence            555666554 36889999998875 9999999999999988886542                     1111   111  


Q ss_pred             ---CCCCEEEeccCCCCccc--CCCcCCCcEEEEeeecC
Q 024306          178 ---SEADIVIAAAGVANLVR--GSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       178 ---~~aDiVIsAtg~p~~i~--~~~~~~g~vViDv~~~~  211 (269)
                         ..+|+||.++|.+..+.  -++++++-.++=+|.++
T Consensus        94 ~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~  132 (170)
T d1e3ja2          94 AIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGS  132 (170)
T ss_dssp             HSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCS
T ss_pred             ccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCC
Confidence               34899999999876432  35678877777777554

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00037  Score=59.17  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=34.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      |+||+++|.|++.-+|+++|+.|+++|++|.++.|+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~   47 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARS   47 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            799999999998888999999999999999999886

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.57  E-value=0.0016  Score=50.26  Aligned_cols=53  Identities=21%  Similarity=0.372  Sum_probs=40.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC-------------------------CCHhhhcCCCCEEEeccCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT-------------------------KNPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t-------------------------~~l~~~~~~aDiVIsAtg~p  190 (269)
                      +||.|||+|. ||.++|++|+.++ +++.+++...                         .+-.+.+++||+||.++|.|
T Consensus         2 ~KI~IIGaG~-VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~~   80 (142)
T d1uxja1           2 KKISIIGAGF-VGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAP   80 (142)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CeEEEECCCH-HHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeecc
Confidence            6899999966 5999999998887 4777775431                         11235678999999988865

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.55  E-value=0.0019  Score=49.67  Aligned_cols=52  Identities=31%  Similarity=0.458  Sum_probs=40.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-------------------------CCHhhhcCCCCEEEeccCCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-------------------------KNPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-------------------------~~l~~~~~~aDiVIsAtg~p  190 (269)
                      ||.|||+|. ||.+++..|+.++.  ++.+++...                         .+..+.+++||+||.+.|.|
T Consensus         2 KI~IIGaG~-VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           2 KITVIGAGN-VGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             EEEEECcCH-HHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            699999976 59999999999883  688886442                         13356788999999888864

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.52  E-value=0.0026  Score=50.14  Aligned_cols=57  Identities=21%  Similarity=0.424  Sum_probs=44.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHhhhcCCCCEEEecc
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t------------------------~~l~~~~~~aDiVIsAt  187 (269)
                      +..+||.|||+|. ||..+++.|..+|.  ++.+++.+.                        ..-.+.+++||+||.++
T Consensus        18 ~~~~KV~IIGaG~-VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA   96 (160)
T d1i0za1          18 VPNNKITVVGVGQ-VGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA   96 (160)
T ss_dssp             CCSSEEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred             CCCCeEEEECCCH-HHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence            5678999999977 59999999999984  688886541                        12246789999999888


Q ss_pred             CCCC
Q 024306          188 GVAN  191 (269)
Q Consensus       188 g~p~  191 (269)
                      |.|.
T Consensus        97 g~~~  100 (160)
T d1i0za1          97 GVRQ  100 (160)
T ss_dssp             SCCC
T ss_pred             CCcc
Confidence            8653

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.51  E-value=0.00058  Score=58.28  Aligned_cols=37  Identities=14%  Similarity=0.221  Sum_probs=34.2

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .|+||.++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKS   38 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3789999999998878999999999999999999876

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.0016  Score=52.09  Aligned_cols=52  Identities=29%  Similarity=0.274  Sum_probs=42.5

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      |++-.+..|++.+...++.+|+|.|++|.||..+.+++...|++|+.+.++.
T Consensus        15 TA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~   66 (177)
T d1o89a2          15 TAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRE   66 (177)
T ss_dssp             HHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             HHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecch
Confidence            4555556677778877888999999999899999999999999988776654

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.50  E-value=0.0015  Score=50.82  Aligned_cols=53  Identities=25%  Similarity=0.266  Sum_probs=40.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHhhhcCCCCEEEeccCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t------------------------~~l~~~~~~aDiVIsAtg~p  190 (269)
                      |||.|||+|. ||..+++.|..+|.  ++.+++...                        ..-.+.+++||+||.+.|.|
T Consensus         2 kKI~IIGaG~-VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~   80 (146)
T d1hyha1           2 RKIGIIGLGN-VGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNI   80 (146)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCG
T ss_pred             CeEEEECcCH-HHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecccc
Confidence            7899999976 59999999988883  687775431                        01236689999999888864

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.50  E-value=0.0017  Score=54.47  Aligned_cols=37  Identities=16%  Similarity=0.230  Sum_probs=32.3

Q ss_pred             CccceEEEEcCCc--ccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          134 IMGKNAVVIGRSN--IVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       134 l~gk~v~ViG~gg--~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      |+||+++|.|+++  -+|+++|+.|+++|++|+++.|+.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE   41 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            7999999999753  149999999999999999998763

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.47  E-value=0.0013  Score=55.36  Aligned_cols=38  Identities=18%  Similarity=0.260  Sum_probs=33.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||.|+|.|+++-+|+.+|+.|+++|++|.++.|+
T Consensus         1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~   38 (254)
T d1sbya1           1 MDLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDR   38 (254)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEES
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            36899999999998778999999999999998887544

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00067  Score=57.04  Aligned_cols=38  Identities=11%  Similarity=0.190  Sum_probs=35.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      -+++||.++|.|+|+-+|+.+|..|+++|++|.++.|+
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~   40 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDIN   40 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            36899999999999888999999999999999999886

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.45  E-value=0.0024  Score=49.39  Aligned_cols=54  Identities=20%  Similarity=0.334  Sum_probs=41.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHhhhcCCCCEEEeccCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t------------------------~~l~~~~~~aDiVIsAtg~p  190 (269)
                      .||.|||+|. ||..+|+.|..++.  ++.+++...                        .+-.+.+++||+||.+.|.|
T Consensus         2 ~Ki~IIGaG~-VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~   80 (143)
T d1llda1           2 TKLAVIGAGA-VGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR   80 (143)
T ss_dssp             CEEEEECCSH-HHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCH-HHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEecccc
Confidence            4799999966 69999999998884  688885431                        12245689999999999965


Q ss_pred             C
Q 024306          191 N  191 (269)
Q Consensus       191 ~  191 (269)
                      .
T Consensus        81 ~   81 (143)
T d1llda1          81 Q   81 (143)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.45  E-value=0.00087  Score=56.41  Aligned_cols=37  Identities=24%  Similarity=0.287  Sum_probs=33.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +|+||.++|.|+++-+|+++|+.|+++|++|.++.++
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~   39 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS   39 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            6899999999998888999999999999999987554

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.43  E-value=0.005  Score=45.86  Aligned_cols=38  Identities=26%  Similarity=0.408  Sum_probs=33.6

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .+-++|+|+|||+|-+ |.-+|..|+++|.+||++++..
T Consensus        26 ~~~~~k~vvViGgG~i-G~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          26 VDPEVNNVVVIGSGYI-GIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TCTTCCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSS
T ss_pred             hccCCCEEEEECChHH-HHHHHHHhhccceEEEEEEecC
Confidence            4457899999999886 9999999999999999998764

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.43  E-value=0.00071  Score=54.29  Aligned_cols=92  Identities=13%  Similarity=0.034  Sum_probs=53.9

Q ss_pred             cCCHHHHHHHHHHhCCCCc--cceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCC--------------------CCCH
Q 024306          117 PCTPKGCIELLIRSGVEIM--GKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL--------------------TKNP  173 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~--gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~--------------------t~~l  173 (269)
                      |.+..-+...|.+..---.  +++|+|.|++|.||..+++.+...|++ |..+.+.                    ++++
T Consensus        10 g~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~   89 (187)
T d1vj1a2          10 GMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNV   89 (187)
T ss_dssp             SHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCH
T ss_pred             hcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhH
Confidence            3334444455544432223  478999998777899999999999986 4444322                    2233


Q ss_pred             hhhcC-----CCCEEEeccCCCCc-ccCCCcCCCcEEEEee
Q 024306          174 EQITS-----EADIVIAAAGVANL-VRGSWLKPGAVVLDVG  208 (269)
Q Consensus       174 ~~~~~-----~aDiVIsAtg~p~~-i~~~~~~~g~vViDv~  208 (269)
                      .+.++     .+|+|+.++|.+.+ -..+.++++-.++-+|
T Consensus        90 ~~~~~~~~~~GvDvv~D~vGg~~~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2          90 AEQLREACPGGVDVYFDNVGGDISNTVISQMNENSHIILCG  130 (187)
T ss_dssp             HHHHHHHCTTCEEEEEESSCHHHHHHHHTTEEEEEEEEEC-
T ss_pred             HHHHHHHhccCceEEEecCCchhHHHHhhhccccccEEEec
Confidence            33222     27888888775433 2344566766666665

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.42  E-value=0.0027  Score=49.13  Aligned_cols=93  Identities=14%  Similarity=0.126  Sum_probs=62.2

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-------------------CC----
Q 024306          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-------------------KN----  172 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-------------------~~----  172 (269)
                      +||.+..++..++..++. .|.+|+|.|+|++ |..+++.+...|++|+++.++.                   .+    
T Consensus         9 l~~~~~Ta~~al~~~~~~-~g~~vlv~G~G~i-G~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~   86 (168)
T d1rjwa2           9 IFCAGVTTYKALKVTGAK-PGEWVAIYGIGGL-GHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKF   86 (168)
T ss_dssp             GGTHHHHHHHHHHHHTCC-TTCEEEEECCSTT-HHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCC-CCCEEEEeecccc-hhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhh
Confidence            477766677778777765 6899999999775 9999999999999988885442                   11    


Q ss_pred             HhhhcCCCCEEEeccCCCCcc--cCCCcCCCcEEEEeeec
Q 024306          173 PEQITSEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       173 l~~~~~~aDiVIsAtg~p~~i--~~~~~~~g~vViDv~~~  210 (269)
                      +.+..+..|.+|..++.+..+  .-+.++++..++-++.+
T Consensus        87 ~~~~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~  126 (168)
T d1rjwa2          87 MKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLP  126 (168)
T ss_dssp             HHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCC
T ss_pred             cccccCCCceEEeecCCHHHHHHHHHHhccCCceEecccc
Confidence            223344455555555544332  22346777667667754

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.00072  Score=57.08  Aligned_cols=37  Identities=19%  Similarity=0.112  Sum_probs=34.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++||.++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~   43 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCART   43 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999999889999999999999999999766

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.38  E-value=0.0067  Score=50.26  Aligned_cols=89  Identities=20%  Similarity=0.283  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC----------------------------C
Q 024306          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL----------------------------T  170 (269)
Q Consensus       120 ~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~----------------------------t  170 (269)
                      -.|++..++-.+.++++.+++++|+|.+ |..++.+|.+.+. ++++++++                            .
T Consensus        10 LAgll~a~~~~g~~l~d~riv~~GAGsA-g~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~   88 (222)
T d1vl6a1          10 SAAFLNALKLTEKKIEEVKVVVNGIGAA-GYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLS   88 (222)
T ss_dssp             HHHHHHHHHHHTCCTTTCEEEEECCSHH-HHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCC
T ss_pred             HHHHHHHHHHhCCChhhcEEEEEChHHH-HHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhh
Confidence            3678889999999999999999999998 9999999998886 59999765                            1


Q ss_pred             CCHhhhcCCCCEEEeccCCCCcccCCCcC---CCcEEEEeeecC
Q 024306          171 KNPEQITSEADIVIAAAGVANLVRGSWLK---PGAVVLDVGTCP  211 (269)
Q Consensus       171 ~~l~~~~~~aDiVIsAtg~p~~i~~~~~~---~g~vViDv~~~~  211 (269)
                      .++.+.++.+|+++.+.. ++.+++|+++   +.-+|+=+. ||
T Consensus        89 ~~l~~~l~g~~~~~g~~~-~~~~~~e~m~~~~~rPIIFpLS-NP  130 (222)
T d1vl6a1          89 GDLETALEGADFFIGVSR-GNILKPEWIKKMSRKPVIFALA-NP  130 (222)
T ss_dssp             SCHHHHHTTCSEEEECSC-SSCSCHHHHTTSCSSCEEEECC-SS
T ss_pred             cchHhhccCcceeccccc-cccccHHHHhhcCCCCEEEecC-CC
Confidence            356678888998886653 5566655443   355666666 44

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.37  E-value=0.00076  Score=57.14  Aligned_cols=37  Identities=27%  Similarity=0.320  Sum_probs=34.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .|+||.++|.|+++-+|+++|+.|+++|++|.++.++
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIA   39 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999988888999999999999999999775

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=96.37  E-value=0.0029  Score=54.67  Aligned_cols=56  Identities=20%  Similarity=0.092  Sum_probs=44.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC-----------------------------CCHhhhcCCCCEEE
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT-----------------------------KNPEQITSEADIVI  184 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t-----------------------------~~l~~~~~~aDiVI  184 (269)
                      -+||+|+|.|++|.+|..++..|.++|++|..+.|+.                             ..+.+.+..+|.|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            4699999999999999999999999999998775431                             12346778899998


Q ss_pred             eccCC
Q 024306          185 AAAGV  189 (269)
Q Consensus       185 sAtg~  189 (269)
                      .....
T Consensus        89 ~~a~~   93 (342)
T d1y1pa1          89 HIASV   93 (342)
T ss_dssp             ECCCC
T ss_pred             hhccc
Confidence            66653

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.35  E-value=0.0022  Score=50.01  Aligned_cols=79  Identities=20%  Similarity=0.273  Sum_probs=55.6

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC---EEEEEeCCC----------------CCHhhhcCCCCEEEeccCCCC--ccc
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHA---TVSIVHALT----------------KNPEQITSEADIVIAAAGVAN--LVR  194 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga---~Vti~~~~t----------------~~l~~~~~~aDiVIsAtg~p~--~i~  194 (269)
                      |-+|.|+|++|.+|.-+.++|.++..   ++..+.+..                ........+.|+++.+++...  ..-
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~~~   80 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKYA   80 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccchhhHH
Confidence            56899999999999999999988852   455554331                112345577899999988421  133


Q ss_pred             CCCcCCCcEEEEeeecCCCC
Q 024306          195 GSWLKPGAVVLDVGTCPVDD  214 (269)
Q Consensus       195 ~~~~~~g~vViDv~~~~~~~  214 (269)
                      ++....+..|||.+.....+
T Consensus        81 ~~~~~~~~~VIDlSsdfR~~  100 (154)
T d2gz1a1          81 PYAVKAGVVVVDNTSYFRQN  100 (154)
T ss_dssp             HHHHHTTCEEEECSSTTTTC
T ss_pred             hhhccccceehhcChhhhcc
Confidence            34567899999999776544

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.34  E-value=0.0023  Score=49.17  Aligned_cols=53  Identities=23%  Similarity=0.279  Sum_probs=40.5

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-----------------------CCHhhhcCCCCEEEeccCCCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-----------------------KNPEQITSEADIVIAAAGVAN  191 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-----------------------~~l~~~~~~aDiVIsAtg~p~  191 (269)
                      |+.|||+|. ||.++++.|+.++.  ++.+++...                       .+..+.+++||+||.++|.|.
T Consensus         2 KI~IIGaG~-VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~   79 (140)
T d1a5za1           2 KIGIVGLGR-VGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQ   79 (140)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCC
T ss_pred             EEEEECcCH-HHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEeccccc
Confidence            789999976 59999999888873  688875431                       123467899999999998653

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.33  E-value=0.0035  Score=48.24  Aligned_cols=53  Identities=13%  Similarity=0.347  Sum_probs=38.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-----------------------CCHhhhcCCCCEEEeccCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-----------------------KNPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-----------------------~~l~~~~~~aDiVIsAtg~p  190 (269)
                      +||.|||+|. ||..+++.|..++.  ++.+++...                       ....+.+++||+||.+.|.+
T Consensus         2 ~KI~IIGaG~-VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~   79 (142)
T d1y6ja1           2 SKVAIIGAGF-VGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGAN   79 (142)
T ss_dssp             CCEEEECCSH-HHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC-
T ss_pred             CeEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccc
Confidence            4799999966 59999999999884  688886432                       11245678889888887754

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=96.32  E-value=0.0013  Score=55.02  Aligned_cols=35  Identities=20%  Similarity=0.205  Sum_probs=31.0

Q ss_pred             CccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++||+++|.|++   |+ |+++|+.|+++||+|.++.+.
T Consensus         4 l~gK~~lItGaag~~GI-G~aiA~~la~~Ga~Vil~~~~   41 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSI-AFHIARVAQEQGAQLVLTGFD   41 (268)
T ss_dssp             TTTCEEEECCCSSTTCH-HHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCCEEEEECCCCCCHH-HHHHHHHHHHcCCEEEEEeCC
Confidence            789999999953   45 999999999999999998765

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.31  E-value=0.0021  Score=55.56  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=33.8

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      ..|+||.++|.|+|+-+|+++|..|+++|++|.++.+
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~   39 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDL   39 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence            4689999999999988899999999999999999854

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.30  E-value=0.00097  Score=56.64  Aligned_cols=37  Identities=27%  Similarity=0.413  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .|+||.++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~   38 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRS   38 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999998888999999999999999999775

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.28  E-value=0.0012  Score=51.12  Aligned_cols=70  Identities=19%  Similarity=0.207  Sum_probs=48.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCCC--------------HhhhcCCCCEEEeccCCCC-c--ccCCCcC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTKN--------------PEQITSEADIVIAAAGVAN-L--VRGSWLK  199 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~~--------------l~~~~~~aDiVIsAtg~p~-~--i~~~~~~  199 (269)
                      ++.+||+|.+ |.+++..|.+.| .+|.+++|+.+.              -.+.++++|+||-|+. |. +  +-.+...
T Consensus         2 kI~fIG~G~M-G~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~v~~~Div~lavk-P~~~~~v~~~l~~   79 (152)
T d1yqga2           2 NVYFLGGGNM-AAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLILAVK-PQDMEAACKNIRT   79 (152)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCCTTSEEEECSC-HHHHHHHHTTCCC
T ss_pred             EEEEEcCcHH-HHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccccccccceEEEecC-HHHHHHhHHHHhh
Confidence            6899999887 999999888777 689999886311              1134678999999986 32 1  2223333


Q ss_pred             CCcEEEEeee
Q 024306          200 PGAVVLDVGT  209 (269)
Q Consensus       200 ~g~vViDv~~  209 (269)
                      .+.+++.+.-
T Consensus        80 ~~~~viS~~a   89 (152)
T d1yqga2          80 NGALVLSVAA   89 (152)
T ss_dssp             TTCEEEECCT
T ss_pred             cccEEeeccc
Confidence            4677777654

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=96.27  E-value=0.0018  Score=55.67  Aligned_cols=37  Identities=32%  Similarity=0.223  Sum_probs=34.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      ++||+|+|.|++|.+|..++..|.++|++|..+.|..
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4899999999999999999999999999999998753

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0034  Score=43.49  Aligned_cols=53  Identities=28%  Similarity=0.270  Sum_probs=41.4

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK  171 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~  171 (269)
                      |+.-++..+.+.+..-+|.+++|.|++|.||..+.+++...|++|+.+.++.+
T Consensus        15 TA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~   67 (77)
T d1o8ca2          15 TAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRES   67 (77)
T ss_dssp             HHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             HHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHH
Confidence            44444555556666678999999999999999999999999999887766543

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.00098  Score=57.57  Aligned_cols=36  Identities=22%  Similarity=0.231  Sum_probs=33.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      |+||.++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~   45 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRK   45 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            899999999998888999999999999999999875

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.23  E-value=0.0036  Score=49.27  Aligned_cols=57  Identities=19%  Similarity=0.320  Sum_probs=43.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC------------------------CCHhhhcCCCCEEEecc
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT------------------------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t------------------------~~l~~~~~~aDiVIsAt  187 (269)
                      ++..||.|||+|. ||..+|++|..++.  ++.+++...                        ..-.+.+++||+||.+.
T Consensus        17 ~~~~KI~IIGaG~-VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvita   95 (159)
T d2ldxa1          17 LSRCKITVVGVGD-VGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITA   95 (159)
T ss_dssp             CCCCEEEEECCSH-HHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECC
T ss_pred             CCCCeEEEECCCH-HHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEec
Confidence            4566899999977 59999999999984  688886441                        11246678999999988


Q ss_pred             CCCC
Q 024306          188 GVAN  191 (269)
Q Consensus       188 g~p~  191 (269)
                      |.|.
T Consensus        96 g~~~   99 (159)
T d2ldxa1          96 GARM   99 (159)
T ss_dssp             SCCC
T ss_pred             cccc
Confidence            8643

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.23  E-value=0.00078  Score=56.96  Aligned_cols=37  Identities=32%  Similarity=0.424  Sum_probs=34.1

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .|+||.++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~   38 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRH   38 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            3799999999998888999999999999999999876

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.20  E-value=0.0017  Score=51.00  Aligned_cols=34  Identities=12%  Similarity=0.246  Sum_probs=30.9

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~  169 (269)
                      .+|||+|||+|-+ |..+|..|+++|++ |+++.+.
T Consensus         3 ~~~kVaIIGaGpa-Gl~aA~~l~~~G~~~V~v~E~~   37 (196)
T d1gtea4           3 YSAKIALLGAGPA-SISCASFLARLGYSDITIFEKQ   37 (196)
T ss_dssp             GGCCEEEECCSHH-HHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCEEEEECChHH-HHHHHHHHHHCCCCeEEEEEec
Confidence            4799999999998 99999999999985 9999765

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.17  E-value=0.0031  Score=52.10  Aligned_cols=52  Identities=13%  Similarity=0.197  Sum_probs=42.6

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCH------hhhcC--CCCEEEeccCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNP------EQITS--EADIVIAAAGV  189 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l------~~~~~--~aDiVIsAtg~  189 (269)
                      ||+|+|++|.+|+.++..|.++|.+|+.++|..-++      .+.++  +.|+||.+.+.
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~~d~~~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccCCCHHHHHHHHHHcCCCEEEeeccc
Confidence            699999999999999999999999999998875332      34444  56999988874

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0039  Score=53.23  Aligned_cols=52  Identities=21%  Similarity=0.229  Sum_probs=40.6

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------CCHhhhcCCCCEEEeccC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAG  188 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------~~l~~~~~~aDiVIsAtg  188 (269)
                      |+|+|.|++|.+|+.++..|.++|.+|+.+.+..                     ..+.....+.|+||...+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlAa   74 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLAS   74 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEECcc
Confidence            7899999999999999999999999999885421                     112344567899996554

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.14  E-value=0.00093  Score=56.87  Aligned_cols=36  Identities=25%  Similarity=0.445  Sum_probs=33.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      |+||+++|.|+++-+|+++|+.|+++|++|.++.|+
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~   37 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRN   37 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            789999999998888999999999999999999775

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=96.13  E-value=0.0023  Score=55.59  Aligned_cols=91  Identities=7%  Similarity=0.109  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC----CC-------EEEEEeCCC------------------
Q 024306          120 PKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----HA-------TVSIVHALT------------------  170 (269)
Q Consensus       120 ~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~----ga-------~Vti~~~~t------------------  170 (269)
                      -.|++..++-.+.++++.++++.|+|.+ |..++.+|...    |.       ++++++++-                  
T Consensus         9 lAglinAlki~gk~l~d~kivi~GAGaA-g~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~~~a~   87 (308)
T d1o0sa1           9 VAGLLTCTRVTKKLVSQEKYLFFGAGAA-STGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAK   87 (308)
T ss_dssp             HHHHHHHHHHHCCCGGGCCEEEECCSHH-HHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCB
T ss_pred             HHHHHHHHHHhCCCHHHcEEEEECcCHH-HHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHHHHHH
Confidence            3678888999999999999999999998 99988887533    32       399997640                  


Q ss_pred             -----CCHhhhcCC--CCEEEeccCCCCcccCCCcC------CCcEEEEeeecCC
Q 024306          171 -----KNPEQITSE--ADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  212 (269)
Q Consensus       171 -----~~l~~~~~~--aDiVIsAtg~p~~i~~~~~~------~g~vViDv~~~~~  212 (269)
                           .++.+.++.  -+++|-+.+.++.+++++++      +.-+|+=++ ||.
T Consensus        88 ~~~~~~~l~~~i~~~kptvliG~s~~~g~ft~evv~~Ma~~~~~PIIFaLS-NPt  141 (308)
T d1o0sa1          88 DMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALS-NPT  141 (308)
T ss_dssp             SSCCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             hcccCCcHHHHHhccccccEEecccccCCCCHHHHHHHHhhCCCcEEEEcc-CCC
Confidence                 133444433  36889888888899999885      677888877 663

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.0024  Score=49.61  Aligned_cols=78  Identities=14%  Similarity=0.140  Sum_probs=51.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhC-C---CEEEEEeCCCC---------------CH--hhhcCCCCEEEeccCCC--Ccc
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRH-H---ATVSIVHALTK---------------NP--EQITSEADIVIAAAGVA--NLV  193 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~-g---a~Vti~~~~t~---------------~l--~~~~~~aDiVIsAtg~p--~~i  193 (269)
                      |+|.|||+.|.||+-+...|.++ .   .+++.+.+...               ++  .+.+++.|++|.|+|..  ..+
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~~~   81 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEI   81 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHHHH
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHHHHh
Confidence            58999999999999999755543 3   36666654320               11  23467899999999842  123


Q ss_pred             cCCCcCCC--cEEEEeeecCCCC
Q 024306          194 RGSWLKPG--AVVLDVGTCPVDD  214 (269)
Q Consensus       194 ~~~~~~~g--~vViDv~~~~~~~  214 (269)
                      -+...+.|  .+|||.+....-+
T Consensus        82 ~~~~~~~g~~~~VID~Ss~fR~~  104 (146)
T d1t4ba1          82 YPKLRESGWQGYWIDAASSLRMK  104 (146)
T ss_dssp             HHHHHHTTCCCEEEECSSTTTTC
T ss_pred             hHHHHhcCCCeecccCCcccccC
Confidence            33344455  5899999766544

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.11  E-value=0.0017  Score=52.14  Aligned_cols=32  Identities=16%  Similarity=0.148  Sum_probs=28.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      |+|.|||+|-+ |+.+|..++..|.+|+++++.
T Consensus         5 ~~vaViGaG~m-G~~iA~~~a~~G~~V~l~D~~   36 (186)
T d1wdka3           5 KQAAVLGAGIM-GGGIAYQSASKGTPILMKDIN   36 (186)
T ss_dssp             SSEEEECCHHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEEECcCHH-HHHHHHHHHhCCCeEEEEECC
Confidence            67999999776 999999999999999999764

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.10  E-value=0.0035  Score=54.31  Aligned_cols=56  Identities=14%  Similarity=0.052  Sum_probs=45.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC---------------------CCHhhhcCCCCEEEeccCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT---------------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t---------------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      -++.+|+|.|++|.+|+.++..|.++|.+|+++.+..                     .++.+.++..|.||..++.
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~~   89 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD   89 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecccc
Confidence            3788999999999999999999999999999986431                     1233456789999977653

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0047  Score=47.78  Aligned_cols=53  Identities=25%  Similarity=0.398  Sum_probs=38.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHh-CC--CEEEEEeCCC-----------------------CCHhhhcCCCCEEEeccCCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQR-HH--ATVSIVHALT-----------------------KNPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~-~g--a~Vti~~~~t-----------------------~~l~~~~~~aDiVIsAtg~p  190 (269)
                      ||.|||++|.||..+|++|.. .+  .++.+++...                       .+..+.+++||+||.+.|.|
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~   80 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR   80 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence            789999756679999998754 34  3677775421                       12345789999999999865

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.0038  Score=51.78  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=32.1

Q ss_pred             CccceEEEEcCCc--ccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          134 IMGKNAVVIGRSN--IVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       134 l~gk~v~ViG~gg--~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      |+||+++|.|+++  -+|+++|+.|+++|++|.++.++.
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~   41 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   41 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence            7999999999864  238999999999999999998764

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.01  E-value=0.0072  Score=47.31  Aligned_cols=55  Identities=20%  Similarity=0.284  Sum_probs=47.0

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC-------------------------CCCHhhhcCCCCEEEecc
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-------------------------TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-------------------------t~~l~~~~~~aDiVIsAt  187 (269)
                      +|+|++|+++|-+..|.+.++.+|...|+++++|...                         +.++.+.+++||+|.+..
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            4789999999999999999999999999999999643                         135677899999999654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.00  E-value=0.0023  Score=50.25  Aligned_cols=94  Identities=14%  Similarity=0.174  Sum_probs=62.4

Q ss_pred             ccCCHHHHHHHHHHhCCCC-ccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC------------------CC-Hh
Q 024306          116 IPCTPKGCIELLIRSGVEI-MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT------------------KN-PE  174 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l-~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t------------------~~-l~  174 (269)
                      ++|...-....|++.+..+ .|.+|+|+|+|+. |..+++++..+|+ .|+++.++.                  .+ .+
T Consensus        12 l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~v-G~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~   90 (172)
T d1h2ba2          12 LADAGITAYRAVKKAARTLYPGAYVAIVGVGGL-GHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVK   90 (172)
T ss_dssp             GGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHH-HHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHH
T ss_pred             HHhHHHHHHHHHHHhhhccCCCCEEEEeCCChH-HHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHH
Confidence            4665556667776665443 6899999999886 9999999988897 566665441                  11 11


Q ss_pred             ---hhc--CCCCEEEeccCCCCcc--cCCCcCCCcEEEEeeec
Q 024306          175 ---QIT--SEADIVIAAAGVANLV--RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       175 ---~~~--~~aDiVIsAtg~p~~i--~~~~~~~g~vViDv~~~  210 (269)
                         +..  ...|+||.++|.+..+  .-+.++++-.++=+|..
T Consensus        91 ~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~  133 (172)
T d1h2ba2          91 QVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYG  133 (172)
T ss_dssp             HHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCS
T ss_pred             HHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCc
Confidence               111  2479999999976543  34467776666656753

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=95.94  E-value=0.0033  Score=54.39  Aligned_cols=92  Identities=15%  Similarity=0.240  Sum_probs=69.5

Q ss_pred             CHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhC----C------C-EEEEEeCCC-----------------
Q 024306          119 TPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRH----H------A-TVSIVHALT-----------------  170 (269)
Q Consensus       119 t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~----g------a-~Vti~~~~t-----------------  170 (269)
                      +-.|++..++-.+.++++.++++.|+|-+ |..++.+|...    |      . .+++|+++-                 
T Consensus         8 ~lAglinAlki~gk~l~d~kiV~~GAGsA-g~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~~~a   86 (298)
T d1gq2a1           8 AVAGLLAALRITKNRLSDHTVLFQGAGEA-ALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFA   86 (298)
T ss_dssp             HHHHHHHHHHHHTSCGGGCCEEEECCSHH-HHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGC
T ss_pred             HHHHHHHHHHHhCCCHHHcEEEEECccHH-HHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHHHHH
Confidence            34678899999999999999999999998 99988887522    2      1 589997650                 


Q ss_pred             ------CCHhhhcCC--CCEEEeccCCCCcccCCCcC------CCcEEEEeeecCC
Q 024306          171 ------KNPEQITSE--ADIVIAAAGVANLVRGSWLK------PGAVVLDVGTCPV  212 (269)
Q Consensus       171 ------~~l~~~~~~--aDiVIsAtg~p~~i~~~~~~------~g~vViDv~~~~~  212 (269)
                            .++.+.++.  .+++|-+++.++.+++++++      +.-+|+=++ ||.
T Consensus        87 ~~~~~~~~l~~~i~~vkptvliG~s~~~g~ft~evv~~ma~~~~~PIIFaLS-NPt  141 (298)
T d1gq2a1          87 HEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALS-NPT  141 (298)
T ss_dssp             BSCCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECC-SSG
T ss_pred             HHhhhhhhhHHHhhccChheeEecccccCcCCHHHHHHHHhhCCCCEEEEcc-CCC
Confidence                  233444432  67999999988999998875      567888777 553

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.94  E-value=0.0046  Score=47.59  Aligned_cols=53  Identities=15%  Similarity=0.280  Sum_probs=40.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-------------------------CCHhhhcCCCCEEEeccCCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-------------------------KNPEQITSEADIVIAAAGVA  190 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-------------------------~~l~~~~~~aDiVIsAtg~p  190 (269)
                      |+.|||+|. ||.++|+.|+.++.  ++.+++...                         .+-.+.+++||+||.+.|.|
T Consensus         2 KI~IIGaG~-VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag~~   80 (142)
T d1ojua1           2 KLGFVGAGR-VGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (142)
T ss_dssp             EEEEECCSH-HHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             EEEEECcCH-HHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEecccc
Confidence            789999966 59999999988873  588875331                         11246889999999888854


Q ss_pred             C
Q 024306          191 N  191 (269)
Q Consensus       191 ~  191 (269)
                      .
T Consensus        81 ~   81 (142)
T d1ojua1          81 R   81 (142)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.90  E-value=0.0034  Score=50.65  Aligned_cols=34  Identities=35%  Similarity=0.495  Sum_probs=30.4

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +-|+|+|||+|-+ |-.+|..|+++|++|+|+.+.
T Consensus         5 ~~~kVvVIGaGia-Gl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           5 SQKRVVVLGSGVI-GLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CSCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCcEEEECccHH-HHHHHHHHHHCCCCEEEEeCC
Confidence            3478999999887 999999999999999999763

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=95.90  E-value=0.0044  Score=48.17  Aligned_cols=78  Identities=14%  Similarity=0.107  Sum_probs=51.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhC-C---CEEEEEeCCC-----------------CCHhhhcCCCCEEEeccCCC--Cccc
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRH-H---ATVSIVHALT-----------------KNPEQITSEADIVIAAAGVA--NLVR  194 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~-g---a~Vti~~~~t-----------------~~l~~~~~~aDiVIsAtg~p--~~i~  194 (269)
                      ||.|||+.|.||+-+.+.|.++ +   .++..+.++.                 ..-.+..+++|++|.|+|..  .-+.
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s~~~~   81 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEKVY   81 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHHHH
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHHHHHh
Confidence            6999999999999999876543 2   4666554331                 01124568999999999842  1233


Q ss_pred             CCCcCCC--cEEEEeeecCCCCC
Q 024306          195 GSWLKPG--AVVLDVGTCPVDDP  215 (269)
Q Consensus       195 ~~~~~~g--~vViDv~~~~~~~~  215 (269)
                      +..++.|  .+|||.+....-++
T Consensus        82 ~~l~~~g~~~~VIDlSsdfR~~~  104 (147)
T d1mb4a1          82 PALRQAGWKGYWIDAASTLRMDK  104 (147)
T ss_dssp             HHHHHTTCCSEEEESSSTTTTCT
T ss_pred             HHHHHcCCceEEEeCCccccccC
Confidence            3344444  57999997765454

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.89  E-value=0.0046  Score=51.46  Aligned_cols=34  Identities=6%  Similarity=0.070  Sum_probs=30.8

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      -+||+|+|++|.+|+.++..|.++|.+|+++.|.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~   36 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRP   36 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            3569999999999999999999999999998775

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.84  E-value=0.0048  Score=50.91  Aligned_cols=35  Identities=11%  Similarity=0.173  Sum_probs=32.0

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +||+|+|.|+++-+|+++++.|+++|++|.++.+.
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~   35 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVV   35 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            68999999998888999999999999999988654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.83  E-value=0.0057  Score=51.12  Aligned_cols=35  Identities=20%  Similarity=0.171  Sum_probs=31.4

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .||-++|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~   35 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARG   35 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            37888999988878999999999999999999876

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.82  E-value=0.0025  Score=49.21  Aligned_cols=32  Identities=16%  Similarity=0.212  Sum_probs=28.2

Q ss_pred             eEEEE-cCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          138 NAVVI-GRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       138 ~v~Vi-G~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      ||.|+ |+|+ +|+++|..|++.|++|++..|+.
T Consensus         2 ki~vigGaG~-iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGN-LGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSH-HHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcH-HHHHHHHHHHHCCCEEEEEECCH
Confidence            68899 6676 59999999999999999999874

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.76  E-value=0.008  Score=49.66  Aligned_cols=54  Identities=19%  Similarity=0.236  Sum_probs=41.1

Q ss_pred             cccCCHHHHHHHHHHhC-CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          115 FIPCTPKGCIELLIRSG-VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       115 ~~p~t~~g~~~~l~~~~-~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +...+.+..++..+..- -.-..|+|+|||+|-+ |..+|..|+++|.+|+|+.+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~pkkV~IIGaG~a-GLsaA~~L~~~G~~V~vlE~~   62 (370)
T d2iida1           8 FQENDYEEFLEIARNGLKATSNPKHVVIVGAGMA-GLSAAYVLAGAGHQVTVLEAS   62 (370)
T ss_dssp             GCCTTHHHHHHHHHHCSCCCSSCCEEEEECCBHH-HHHHHHHHHHHTCEEEEECSS
T ss_pred             cCCccHHHHHHHHhcCCCCCCCCCeEEEECCCHH-HHHHHHHHHHCCCCEEEEeCC
Confidence            33445566666665422 2336789999999988 999999999999999999764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.75  E-value=0.0054  Score=47.59  Aligned_cols=56  Identities=11%  Similarity=0.160  Sum_probs=40.3

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC-------EEEEEeCC--------------------------CCCHhhhcCCCCE
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHA-------TVSIVHAL--------------------------TKNPEQITSEADI  182 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga-------~Vti~~~~--------------------------t~~l~~~~~~aDi  182 (269)
                      .-||+||||+|.||..+++.|+..+.       .+.+.+..                          ..+.++.++++|+
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv   82 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV   82 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceE
Confidence            34899999877789999999876542       23333221                          1355788999999


Q ss_pred             EEeccCCCC
Q 024306          183 VIAAAGVAN  191 (269)
Q Consensus       183 VIsAtg~p~  191 (269)
                      ||.+.|.|.
T Consensus        83 VVitag~~~   91 (154)
T d5mdha1          83 AILVGSMPR   91 (154)
T ss_dssp             EEECCSCCC
T ss_pred             EEEecccCC
Confidence            999998654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.75  E-value=0.0069  Score=44.37  Aligned_cols=38  Identities=29%  Similarity=0.409  Sum_probs=32.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .+-..++++|+|+|-+ |--+|..|+++|++||++++..
T Consensus        17 ~~~~p~~vvIiGgG~~-G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          17 PKALPQHLVVVGGGYI-GLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CSSCCSEEEEECCSHH-HHHHHHHHHHHTCEEEEECSSS
T ss_pred             cccCCCeEEEECCCHH-HHHHHHHHhhcccceEEEeeec
Confidence            3344689999999886 9999999999999999998763

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.72  E-value=0.0069  Score=47.94  Aligned_cols=53  Identities=11%  Similarity=0.066  Sum_probs=40.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEE--EeCCC--------------------CCHhhhcCCCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSI--VHALT--------------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti--~~~~t--------------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      ++|+|.|++|.+|+.++..|.++|.+|++  ..|..                    .++.+.++.+|.||...+.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~   78 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA   78 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEee
Confidence            68999999999999999999999975443  44431                    1234667889999977663

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.70  E-value=0.0045  Score=48.06  Aligned_cols=55  Identities=13%  Similarity=0.227  Sum_probs=39.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC-E------EEEEeCC--------------------------CCCHhhhcCCCCE
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHA-T------VSIVHAL--------------------------TKNPEQITSEADI  182 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga-~------Vti~~~~--------------------------t~~l~~~~~~aDi  182 (269)
                      .-||+|+|++|.||.+++..|+..+. .      ..++...                          +.+..+.+++||+
T Consensus         4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv   83 (154)
T d1y7ta1           4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY   83 (154)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccE
Confidence            34899999977789999999987652 1      2222110                          1356788999999


Q ss_pred             EEeccCCC
Q 024306          183 VIAAAGVA  190 (269)
Q Consensus       183 VIsAtg~p  190 (269)
                      ||.+.|.|
T Consensus        84 ViitaG~~   91 (154)
T d1y7ta1          84 ALLVGAAP   91 (154)
T ss_dssp             EEECCCCC
T ss_pred             EEeecCcC
Confidence            99999864

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.69  E-value=0.0024  Score=52.13  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=31.5

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +|+++|.|+++-+|+++|+.|+++|++|.++.++.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~   35 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRR   35 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            58899999977789999999999999999998764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.68  E-value=0.015  Score=41.64  Aligned_cols=36  Identities=14%  Similarity=0.073  Sum_probs=30.9

Q ss_pred             ccceEEEEcCCcccHH-HHHHHHHhCCCEEEEEeCCCC
Q 024306          135 MGKNAVVIGRSNIVGL-PTSLLLQRHHATVSIVHALTK  171 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~-~~a~~L~~~ga~Vti~~~~t~  171 (269)
                      +.|++-+||-||+ |. ++|+.|.++|.+|+-++....
T Consensus         7 ~~~~ihfiGigG~-GMs~LA~~L~~~G~~VsGSD~~~~   43 (96)
T d1p3da1           7 RVQQIHFIGIGGA-GMSGIAEILLNEGYQISGSDIADG   43 (96)
T ss_dssp             TCCEEEEETTTST-THHHHHHHHHHHTCEEEEEESCCS
T ss_pred             hCCEEEEEEECHH-HHHHHHHHHHhCCCEEEEEeCCCC
Confidence            5689999999998 85 559999999999999987643

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.63  E-value=0.01  Score=44.93  Aligned_cols=77  Identities=12%  Similarity=0.137  Sum_probs=57.2

Q ss_pred             CCCccceEEEEcCC---------cccHHHHHHHHHhCCCEEEEEeCC-------------------------CCCHhhhc
Q 024306          132 VEIMGKNAVVIGRS---------NIVGLPTSLLLQRHHATVSIVHAL-------------------------TKNPEQIT  177 (269)
Q Consensus       132 ~~l~gk~v~ViG~g---------g~vg~~~a~~L~~~ga~Vti~~~~-------------------------t~~l~~~~  177 (269)
                      .++.+++|+|+|.+         ++-+..++..|..+|++|.+....                         ..++.+.+
T Consensus         9 ~~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i   88 (136)
T d1mv8a3           9 TSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVV   88 (136)
T ss_dssp             TTSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHH
T ss_pred             HhcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhh
Confidence            44678999999932         222788999999999999998531                         13567788


Q ss_pred             CCCCEEEeccCCCCccc-CCCcCCCcEEEEee
Q 024306          178 SEADIVIAAAGVANLVR-GSWLKPGAVVLDVG  208 (269)
Q Consensus       178 ~~aDiVIsAtg~p~~i~-~~~~~~g~vViDv~  208 (269)
                      ++||+||-+|..+.+-+ ...+.++.+|+|+-
T Consensus        89 ~~~D~ivi~t~h~~f~~l~~~~~~~~~I~D~~  120 (136)
T d1mv8a3          89 ASSDVLVLGNGDELFVDLVNKTPSGKKLVDLV  120 (136)
T ss_dssp             HHCSEEEECSCCGGGHHHHHSCCTTCEEEESS
T ss_pred             hhceEEEEEeCCHHHHHHHHHhcCCCEEEECC
Confidence            99999999999877622 12345678899975

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.61  E-value=0.0051  Score=49.23  Aligned_cols=54  Identities=13%  Similarity=0.115  Sum_probs=39.9

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-----------CCHh----hhcCCCCEEEeccCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-----------KNPE----QITSEADIVIAAAGV  189 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-----------~~l~----~~~~~aDiVIsAtg~  189 (269)
                      .|+|+|+|++|.+|+.++..|.++|.  +|+.+.|+.           .++.    ......|.||.++|.
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~   72 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGSIDTAFCCLGT   72 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCTTEECCBSCHHHHGGGCCSCCSEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcccccccccchhhhhhccccchheeeeeeee
Confidence            38999999999999999999999996  566665542           1221    223446999988774

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.052  Score=46.69  Aligned_cols=149  Identities=11%  Similarity=0.097  Sum_probs=96.7

Q ss_pred             hHHHHHHHHHHHHHcCCeEEEEEcCCCCC----HHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHhcCCccccccc
Q 024306           22 SQTYVRNKIKACEEVGIKSIVTEFADGCT----EDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILDAVSLEKDVDG   97 (269)
Q Consensus        22 s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~----~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~~i~p~kdvdg   97 (269)
                      |-.=--+-..++.++|.++.++..+.+..    .|.+.+.++-|+.-  +++|.+-.+-.  -.......+   .   ..
T Consensus        52 STRTR~SFe~A~~~LGg~~i~~~~~~~~~~~~kgEsi~Dt~~vls~~--~d~iv~R~~~~--~~~~~~~~~---~---~~  121 (310)
T d1tuga1          52 STRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTY--VDAIVMRHPQE--GAARLATEF---S---GN  121 (310)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEECCSSCHHHHTSCCHHHHHHHHTTT--CSEEEEEESSB--THHHHHTTT---C---TT
T ss_pred             CcchhhhHHHHHHHhccccccccccccccccCCCccHHHhhhHhhhc--chheeeechhh--hhhHHHHHh---c---cC
Confidence            33333346679999999999887665432    15678888888763  78899886633  211111111   1   11


Q ss_pred             cccceecccccCCCCCccccCCHHH-HHHHHHHhCCCCccceEEEEcC--CcccHHHHHHHHHhCC-CEEEEEeCC----
Q 024306           98 FHPLNIGNLAMRGREPLFIPCTPKG-CIELLIRSGVEIMGKNAVVIGR--SNIVGLPTSLLLQRHH-ATVSIVHAL----  169 (269)
Q Consensus        98 ~~~~n~g~l~~g~~~~~~~p~t~~g-~~~~l~~~~~~l~gk~v~ViG~--gg~vg~~~a~~L~~~g-a~Vti~~~~----  169 (269)
                      +-.+|.|.      .+.+.||=+.+ ++.+.|+.+ +++|++++.+|-  ++.|.+..+.++...+ ..+++++..    
T Consensus       122 vPVINAg~------~~~~HP~Q~LaD~~Ti~e~~g-~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~  194 (310)
T d1tuga1         122 VPVLNAGD------GSNQHPTQTLLDLFTIQETQG-RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAM  194 (310)
T ss_dssp             SCEEEEEE------TTSCCHHHHHHHHHHHHHHHS-CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCC
T ss_pred             ccEEECCC------CcccchHHHHHHHHHHHHHcC-CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCccccc
Confidence            23456432      23356998888 555555554 699999999997  3345788888888886 579998543    


Q ss_pred             -----------------CCCHhhhcCCCCEEEecc
Q 024306          170 -----------------TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       170 -----------------t~~l~~~~~~aDiVIsAt  187 (269)
                                       ..++.+.+++||+|.+..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~  229 (310)
T d1tuga1         195 PQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTR  229 (310)
T ss_dssp             CHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECC
T ss_pred             chhcccccccccceeeeeechhhhccCCceeeecc
Confidence                             145678899999988543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.57  E-value=0.018  Score=40.70  Aligned_cols=45  Identities=13%  Similarity=0.082  Sum_probs=35.1

Q ss_pred             ceEEEEcCCcccHH-HHHHHHHhCCCEEEEEeCCCCCHhhhcCCCCE
Q 024306          137 KNAVVIGRSNIVGL-PTSLLLQRHHATVSIVHALTKNPEQITSEADI  182 (269)
Q Consensus       137 k~v~ViG~gg~vg~-~~a~~L~~~ga~Vti~~~~t~~l~~~~~~aDi  182 (269)
                      .++-+||-||+ |. ++|+.|.++|+.|+-+++......+.++...+
T Consensus         2 ~~ihfiGIgG~-GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi   47 (89)
T d1j6ua1           2 MKIHFVGIGGI-GMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGI   47 (89)
T ss_dssp             CEEEEETTTSH-HHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTC
T ss_pred             cEEEEEeECHH-HHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCC
Confidence            47889999998 88 78999999999999998775444444555444

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=95.50  E-value=0.0095  Score=49.84  Aligned_cols=48  Identities=27%  Similarity=0.214  Sum_probs=39.2

Q ss_pred             CCHHHHHHHH----HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEE
Q 024306          118 CTPKGCIELL----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  166 (269)
Q Consensus       118 ~t~~g~~~~l----~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~  166 (269)
                      +|++|+...+    ++.+.+++||+|+|=|.|.+ |..+|+.|.+.|++|+.+
T Consensus         9 ATg~Gv~~~~~~~~~~~~~~l~g~~v~IqGfGnV-G~~~a~~L~~~Gakvv~v   60 (242)
T d1v9la1           9 ATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNV-GRWTAYWLEKMGAKVIAV   60 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCTTCEEEEECCSHH-HHHHHHHHHTTTCEEEEE
T ss_pred             hhhHHHHHHHHHHHHHcCCCCCCCEEEEECCCHH-HHHHHHHHHHcCCeEEEe
Confidence            4677765544    45678999999999999885 999999999999996544

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.49  E-value=0.0079  Score=44.99  Aligned_cols=51  Identities=18%  Similarity=0.269  Sum_probs=39.5

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------------C---Hh-hhcCCCCEEEeccCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------------N---PE-QITSEADIVIAAAGV  189 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------------~---l~-~~~~~aDiVIsAtg~  189 (269)
                      +|+|+|.|.. |+.++..|.++|.+|+++.....                   +   +. ..+++||.++.+|+.
T Consensus         2 ~IvI~G~G~~-G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~   75 (132)
T d1lssa_           2 YIIIAGIGRV-GYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGK   75 (132)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred             EEEEECCCHH-HHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCc
Confidence            6999999886 99999999999999999965421                   1   11 236778888888775

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.44  E-value=0.0061  Score=50.12  Aligned_cols=34  Identities=9%  Similarity=0.061  Sum_probs=31.4

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      -|||+|+|++|.+|+.++..|.++|.+|+++.|.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~   36 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRE   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECC
Confidence            4789999999999999999999999999999775

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0065  Score=49.54  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=30.7

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +-++|+|||+|-+ |-.+|..|+++|.+|+|+...
T Consensus         4 ~~~kViVIGaG~a-GL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           4 KTGKVIIIGSGVS-GLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             CCCEEEEECCBHH-HHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCcEEEECCCHH-HHHHHHHHHhCCCCEEEEeCC
Confidence            4567999999999 999999999999999999764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.39  E-value=0.0076  Score=50.30  Aligned_cols=33  Identities=24%  Similarity=0.282  Sum_probs=28.5

Q ss_pred             ceE-EEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNA-VVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v-~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ||| +|.|+++-+|+++|..|+++|++|.++.|+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~   34 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYN   34 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECC
Confidence            555 677887777999999999999999999876

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.38  E-value=0.0095  Score=47.51  Aligned_cols=72  Identities=28%  Similarity=0.447  Sum_probs=49.9

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC---------------------CCHhhhcCCCCEEEeccCCCC---c
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT---------------------KNPEQITSEADIVIAAAGVAN---L  192 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t---------------------~~l~~~~~~aDiVIsAtg~p~---~  192 (269)
                      +|.|+|++|.+|+-+.++|.++- .++..+.+++                     .+..+...++|+++.|++...   +
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s~~~   82 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGASYDL   82 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHHHHH
Confidence            79999999999999999998754 4555543321                     122344567999999998532   2


Q ss_pred             ccCCCcCCCcEEEEeeecCC
Q 024306          193 VRGSWLKPGAVVLDVGTCPV  212 (269)
Q Consensus       193 i~~~~~~~g~vViDv~~~~~  212 (269)
                      +..   ..+..|||++-...
T Consensus        83 ~~~---~~~~~VIDlSadfR   99 (176)
T d1vkna1          83 VRE---LKGVKIIDLGADFR   99 (176)
T ss_dssp             HTT---CCSCEEEESSSTTT
T ss_pred             HHh---hccceEEecCcccc
Confidence            322   15789999997654

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=95.35  E-value=0.016  Score=45.99  Aligned_cols=56  Identities=11%  Similarity=0.135  Sum_probs=41.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC---C----EEEEEeCC--------------------------CCCHhhhcCCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHH---A----TVSIVHAL--------------------------TKNPEQITSEAD  181 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~g---a----~Vti~~~~--------------------------t~~l~~~~~~aD  181 (269)
                      +.-+|+|+||+|.||.+++..|++..   .    .+.+.+..                          +.+..+.++++|
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD  102 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD  102 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence            45689999997778999999988643   1    34444321                          245678899999


Q ss_pred             EEEeccCCC
Q 024306          182 IVIAAAGVA  190 (269)
Q Consensus       182 iVIsAtg~p  190 (269)
                      +||.+.|.|
T Consensus       103 vVvi~ag~~  111 (175)
T d7mdha1         103 WALLIGAKP  111 (175)
T ss_dssp             EEEECCCCC
T ss_pred             eEEEeeccC
Confidence            999888864

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.014  Score=48.22  Aligned_cols=57  Identities=19%  Similarity=0.281  Sum_probs=43.4

Q ss_pred             CCccceEEEEc----------------CCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------CHhhh
Q 024306          133 EIMGKNAVVIG----------------RSNIVGLPTSLLLQRHHATVSIVHALTK--------------------NPEQI  176 (269)
Q Consensus       133 ~l~gk~v~ViG----------------~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~l~~~  176 (269)
                      +|+|++|+|.+                .||-.|.++|..+..+||+|++++....                    .+.+.
T Consensus         3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~~p~~~~~~~~~t~~~m~~~~~~~   82 (223)
T d1u7za_           3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNAS   82 (223)
T ss_dssp             TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCCCCTTEEEEECCSHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccCcccccccceehhhHHHHHHHHhh
Confidence            68899999986                3444599999999999999999875421                    12355


Q ss_pred             cCCCCEEEeccCC
Q 024306          177 TSEADIVIAAAGV  189 (269)
Q Consensus       177 ~~~aDiVIsAtg~  189 (269)
                      ++++|++|.+.-.
T Consensus        83 ~~~~D~~i~aAAv   95 (223)
T d1u7za_          83 VQQQNIFIGCAAV   95 (223)
T ss_dssp             GGGCSEEEECCBC
T ss_pred             hccceeEeeeech
Confidence            6889999966654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.34  E-value=0.0073  Score=52.02  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=31.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +.|+|+|||+|-+ |-.+|..|+++|.+|+|+.++.
T Consensus         1 k~KKI~IIGaG~s-GL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAGFS-GAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCSHH-HHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCEEEEECCcHH-HHHHHHHHHhCCCCEEEEECCC
Confidence            4699999999998 9999999999999999998764

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.32  E-value=0.011  Score=43.82  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=31.9

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      ++|+++|||+|-+ |--+|..|+++|.+||++.+..
T Consensus        29 ~~~~vvIIGgG~i-G~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVGGGVI-GLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCeEEEECcchh-HHHHHHHhhcccceEEEEeecc
Confidence            5799999999886 9999999999999999998764

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.32  E-value=0.01  Score=46.09  Aligned_cols=85  Identities=14%  Similarity=0.133  Sum_probs=54.6

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCE-EEEEeCCC---------------------CCH
Q 024306          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHAT-VSIVHALT---------------------KNP  173 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~-Vti~~~~t---------------------~~l  173 (269)
                      ++|...-....+.+..---.|.+|+|.|+||. |..+++.+...|+. |+++.+..                     .+.
T Consensus         9 l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGv-G~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~   87 (176)
T d2fzwa2           9 LGCGISTGYGAAVNTAKLEPGSVCAVFGLGGV-GLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPI   87 (176)
T ss_dssp             GGTHHHHHHHHHHTTTCCCTTCEEEEECCSHH-HHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCH
T ss_pred             hhcHHHHHHHHHHHhhCCCCCCEEEEecchhH-HHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHH
Confidence            46655555555544333347999999999986 99999999999974 66664431                     111


Q ss_pred             hhhc-----CCCCEEEeccCCCCcc--cCCCcCCC
Q 024306          174 EQIT-----SEADIVIAAAGVANLV--RGSWLKPG  201 (269)
Q Consensus       174 ~~~~-----~~aDiVIsAtg~p~~i--~~~~~~~g  201 (269)
                      .+.+     ..+|+||.++|.+..+  -..++++|
T Consensus        88 ~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g  122 (176)
T d2fzwa2          88 QEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG  122 (176)
T ss_dssp             HHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTT
T ss_pred             HHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCC
Confidence            1111     3489999999976543  23345665

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.30  E-value=0.016  Score=42.29  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=31.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      ..|+++|||+|-+ |.-+|..|.+.|.+||++++..
T Consensus        21 ~p~~v~IiGgG~i-g~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          21 VPKSLVVIGGGYI-GIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             CCSEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCeEEEECCCcc-ceeeeeeecccccEEEEEEecc
Confidence            4589999999886 9999999999999999998775

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.21  E-value=0.016  Score=44.49  Aligned_cols=54  Identities=20%  Similarity=0.316  Sum_probs=38.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCCC-------------------------CCHhhhcCCCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHALT-------------------------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~t-------------------------~~l~~~~~~aDiVIsAtg~  189 (269)
                      .||.|||+.|.||..+|+.|..++.  ++.++....                         ..-.+.+++||+||.+.|.
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvitaG~   80 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEeccc
Confidence            3799999645569999999999984  577764210                         0113557899999988886


Q ss_pred             C
Q 024306          190 A  190 (269)
Q Consensus       190 p  190 (269)
                      |
T Consensus        81 ~   81 (142)
T d1o6za1          81 P   81 (142)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.16  E-value=0.0078  Score=45.84  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=29.6

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~  169 (269)
                      .||||+|||+|-+ |..+|..|.+++  .+||++++.
T Consensus         1 ~gkrivIvGgG~~-G~e~A~~l~~~~~~~~Vtlie~~   36 (186)
T d1fcda1           1 AGRKVVVVGGGTG-GATAAKYIKLADPSIEVTLIEPN   36 (186)
T ss_dssp             CCCEEEEECCSHH-HHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CCCcEEEECccHH-HHHHHHHHHHcCCCCcEEEEECC
Confidence            4899999999987 999999999887  479998654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.12  E-value=0.012  Score=43.49  Aligned_cols=34  Identities=15%  Similarity=0.141  Sum_probs=31.2

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .|+++|||+|-+ |.-+|..|++.|.+||++++..
T Consensus        22 p~~v~IiGgG~i-G~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYI-AVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHH-HHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECCchH-HHHHHHHHHhccccceeeehhc
Confidence            589999999886 9999999999999999999864

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=95.11  E-value=0.015  Score=49.01  Aligned_cols=50  Identities=16%  Similarity=0.195  Sum_probs=40.6

Q ss_pred             cCCHHHHHHHH----HHhCCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE-EEe
Q 024306          117 PCTPKGCIELL----IRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVH  167 (269)
Q Consensus       117 p~t~~g~~~~l----~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt-i~~  167 (269)
                      -+|++|++..+    ++.+.+++||+|+|=|.|.+ |..+++.|.+.|+.|+ +..
T Consensus        13 eATG~Gv~~~~~~~~~~~~~~l~g~~v~IQGfGnV-G~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          13 EATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNV-AWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             THHHHHHHHHHHHHHHHTTCCSTTCEEEECCSSHH-HHHHHHHHHHHTCEEEEEEE
T ss_pred             ccchHHHHHHHHHHHHhCCCCCCCCEEEEECCCHH-HHHHHHHHHHcCCeEEEEec
Confidence            45888865554    45678999999999999885 9999999999999854 543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.11  E-value=0.021  Score=41.67  Aligned_cols=36  Identities=14%  Similarity=0.185  Sum_probs=32.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      ..+|+++|+|+|-+ |--+|..|++.|.+|+++++..
T Consensus        20 ~~~~~vvVvGgG~i-g~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          20 EPGSTVVVVGGSKT-AVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCCSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEEECCCHH-HHHHHHHHHhcchhheEeeccc
Confidence            46899999999886 9999999999999999998764

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.04  E-value=0.014  Score=46.58  Aligned_cols=54  Identities=20%  Similarity=0.271  Sum_probs=47.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------CCHhhhcCCCCEEEeccC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------KNPEQITSEADIVIAAAG  188 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------~~l~~~~~~aDiVIsAtg  188 (269)
                      |++|+|.|||.|-- |++=|..|...|.+|+|-.|..              .+..++++.||+|.-.++
T Consensus        14 ik~k~IaViGYGsQ-G~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~~~aDiim~L~P   81 (182)
T d1np3a2          14 IQGKKVAIIGYGSQ-GHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTP   81 (182)
T ss_dssp             HHTSCEEEECCSHH-HHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSC
T ss_pred             HCCCEEEEEeeCcH-hHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHhhhcCeeeeecc
Confidence            47999999999887 9999999999999999997763              256789999999999888

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.04  E-value=0.013  Score=43.02  Aligned_cols=34  Identities=15%  Similarity=0.258  Sum_probs=31.2

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .|+++|||+|-+ |--+|..|.+.|++||++.+..
T Consensus        21 p~~vvIiGgG~i-g~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYI-GVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEECCChh-hHHHHHHhhccccEEEEEeecc
Confidence            589999999886 9999999999999999998864

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.96  E-value=0.03  Score=44.02  Aligned_cols=56  Identities=21%  Similarity=0.285  Sum_probs=37.6

Q ss_pred             ccceEEEEcCCcccHHHHH-HHHHh-CC----CEEEEEeCC--------------------------CCCHhhhcCCCCE
Q 024306          135 MGKNAVVIGRSNIVGLPTS-LLLQR-HH----ATVSIVHAL--------------------------TKNPEQITSEADI  182 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a-~~L~~-~g----a~Vti~~~~--------------------------t~~l~~~~~~aDi  182 (269)
                      +.-||+|||+|.. |.+.+ ..|.. ..    .++.+++..                          +.+..+.++.||+
T Consensus         2 k~~KI~iIGaGsv-~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~   80 (167)
T d1u8xx1           2 KSFSIVIAGGGST-FTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDF   80 (167)
T ss_dssp             CCEEEEEECTTSS-SHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSE
T ss_pred             CCceEEEECCChh-hhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCE
Confidence            3457999999875 65533 23332 22    257777533                          2467889999999


Q ss_pred             EEeccCCCC
Q 024306          183 VIAAAGVAN  191 (269)
Q Consensus       183 VIsAtg~p~  191 (269)
                      ||+++|.+.
T Consensus        81 Vvitag~~~   89 (167)
T d1u8xx1          81 VMAHIRVGK   89 (167)
T ss_dssp             EEECCCTTH
T ss_pred             EEECCCcCC
Confidence            999998643

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.92  E-value=0.019  Score=47.09  Aligned_cols=34  Identities=15%  Similarity=0.136  Sum_probs=29.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      |-|+|.|+++-+|+++|+.|+++|++|.++.++.
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            4578889877779999999999999999998764

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.91  E-value=0.022  Score=43.70  Aligned_cols=71  Identities=20%  Similarity=0.291  Sum_probs=51.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------------CHhhhcCCCCEEEeccCCCCcc------cCCCc
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------------NPEQITSEADIVIAAAGVANLV------RGSWL  198 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------------~l~~~~~~aDiVIsAtg~p~~i------~~~~~  198 (269)
                      ||-+||-|.+ |.++|+.|.+.|..+ +.+++.+             ...+.+.++|++|.....+..+      -.+..
T Consensus         2 kIg~IGlG~M-G~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~   79 (156)
T d2cvza2           2 KVAFIGLGAM-GYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYL   79 (156)
T ss_dssp             CEEEECCSTT-HHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTC
T ss_pred             eEEEEeHHHH-HHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhccccccc
Confidence            6899999987 999999999888754 5666531             2245667889999877753311      12246


Q ss_pred             CCCcEEEEeeec
Q 024306          199 KPGAVVLDVGTC  210 (269)
Q Consensus       199 ~~g~vViDv~~~  210 (269)
                      +++.+++|....
T Consensus        80 ~~~~~iid~sT~   91 (156)
T d2cvza2          80 REGTYWVDATSG   91 (156)
T ss_dssp             CTTEEEEECSCC
T ss_pred             cccccccccccC
Confidence            789999998864

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.86  E-value=0.0078  Score=47.70  Aligned_cols=75  Identities=23%  Similarity=0.397  Sum_probs=50.9

Q ss_pred             eEEEEcCCcccHHHHHHHHHhC-CCEEEEE-eCC--C---C---------------------CHhhhcCCCCEEEeccCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRH-HATVSIV-HAL--T---K---------------------NPEQITSEADIVIAAAGV  189 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~-ga~Vti~-~~~--t---~---------------------~l~~~~~~aDiVIsAtg~  189 (269)
                      +|.|+|++|.+|+-+.+.|.++ ..++.-+ .+.  .   +                     +......+.|+++.|++.
T Consensus         3 kVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp~   82 (179)
T d2g17a1           3 NTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATAH   82 (179)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSCH
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccccc
Confidence            7999999999999999999987 4565433 111  0   0                     112234678999999884


Q ss_pred             CC--cccCCCcCCCcEEEEeeecCC
Q 024306          190 AN--LVRGSWLKPGAVVLDVGTCPV  212 (269)
Q Consensus       190 p~--~i~~~~~~~g~vViDv~~~~~  212 (269)
                      ..  -+-+.....+..|||.+....
T Consensus        83 ~~s~~~~~~~~~~~~~vIDlSadfR  107 (179)
T d2g17a1          83 EVSHDLAPQFLQAGCVVFDLSGAFR  107 (179)
T ss_dssp             HHHHHHHHHHHHTTCEEEECSSTTS
T ss_pred             hhHHHHhhhhhhcCceeeccccccc
Confidence            21  133344667899999997654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.83  E-value=0.023  Score=44.62  Aligned_cols=96  Identities=15%  Similarity=0.121  Sum_probs=61.2

Q ss_pred             ccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC--------------------C-H
Q 024306          116 IPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK--------------------N-P  173 (269)
Q Consensus       116 ~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~--------------------~-l  173 (269)
                      ++|...-....+.+..---+|.+|+|+|+|+. |...++.+...|+ +|+++.+...                    + .
T Consensus        10 l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~Ggv-Gl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~   88 (176)
T d1d1ta2          10 IGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGV-GLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPI   88 (176)
T ss_dssp             GGTHHHHHHHHHHTTSCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCH
T ss_pred             hhhHHHHHHHHHHHhhCCCCCCEEEEECCCch-hHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHH
Confidence            45544444444433333347999999999996 9999999999996 7888865421                    1 1


Q ss_pred             h---hhc--CCCCEEEeccCCCCcc--cCCCc-CCCcEEEEeeecCC
Q 024306          174 E---QIT--SEADIVIAAAGVANLV--RGSWL-KPGAVVLDVGTCPV  212 (269)
Q Consensus       174 ~---~~~--~~aDiVIsAtg~p~~i--~~~~~-~~g~vViDv~~~~~  212 (269)
                      .   +.+  ..+|++|.++|.+..+  ....+ +.+-.++-+|..+.
T Consensus        89 ~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~  135 (176)
T d1d1ta2          89 SEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPS  135 (176)
T ss_dssp             HHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCT
T ss_pred             HHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEcccc
Confidence            1   112  4689999999976532  12233 44457777886653

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=94.80  E-value=0.014  Score=50.15  Aligned_cols=36  Identities=14%  Similarity=0.020  Sum_probs=32.6

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +-|+|+|+|++|.+|+.++..|.++|.+|+++.|..
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~   37 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSL   37 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCc
Confidence            358999999999999999999999999999998753

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.79  E-value=0.012  Score=43.60  Aligned_cols=35  Identities=26%  Similarity=0.292  Sum_probs=31.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .+++++|||+|-+ |--+|..|.++|.+||++++..
T Consensus        31 ~~~~vvIiGgG~i-G~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          31 NSGEAIIIGGGFI-GLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HHSEEEEEECSHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCcEEEECCcHH-HHHHHHHhhcccceEEEEeccc
Confidence            3589999999886 9999999999999999998764

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.016  Score=42.97  Aligned_cols=34  Identities=15%  Similarity=0.212  Sum_probs=31.2

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .|+++|||+|-+ |--+|..|++.|.+||++++..
T Consensus        22 pk~vvIvGgG~i-G~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYI-AVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEEcCCcc-HHHHHHHHhcCCcEEEEEeecc
Confidence            489999999886 9999999999999999999874

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.76  E-value=0.021  Score=47.58  Aligned_cols=49  Identities=20%  Similarity=0.312  Sum_probs=37.3

Q ss_pred             CCHHHHH----HHHHHhCCC-CccceEEEEcCCcccHHHHHHHHHh-CCCE-EEEEe
Q 024306          118 CTPKGCI----ELLIRSGVE-IMGKNAVVIGRSNIVGLPTSLLLQR-HHAT-VSIVH  167 (269)
Q Consensus       118 ~t~~g~~----~~l~~~~~~-l~gk~v~ViG~gg~vg~~~a~~L~~-~ga~-Vti~~  167 (269)
                      +|++|+.    +.++..+.+ ++||+|+|-|.|.+ |..+++.|.+ .|+. |.+..
T Consensus         9 ATg~Gv~~~~~~~~~~~g~~~l~g~~v~IqGfGnV-G~~~a~~L~~~~G~kvv~vsD   64 (239)
T d1gtma1           9 ATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNA-GYYLAKIMSEDFGMKVVAVSD   64 (239)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSCSTTCEEEEECCSHH-HHHHHHHHHHTTCCEEEEEEC
T ss_pred             hhhHHHHHHHHHHHHHhCCCCcCCCEEEEECCCHH-HHHHHHHHHHhcCcceeeccc
Confidence            4777776    455556654 99999999999885 9999999875 5887 44544

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.75  E-value=0.019  Score=43.18  Aligned_cols=35  Identities=23%  Similarity=0.347  Sum_probs=32.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .+|+++|||+|-+ |--+|..|.++|.+|+++++..
T Consensus        34 ~~k~v~VIGgG~i-G~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGGGYI-GLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEECCchH-HHHHHHHHHhhCcceeeeeecc
Confidence            5799999999886 9999999999999999998764

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.71  E-value=0.022  Score=44.39  Aligned_cols=53  Identities=19%  Similarity=0.073  Sum_probs=37.5

Q ss_pred             eEEEEcCCcccHHHHHHH-HH-hC----CCEEEEEeCC-----------------------CCCHhhhcCCCCEEEeccC
Q 024306          138 NAVVIGRSNIVGLPTSLL-LQ-RH----HATVSIVHAL-----------------------TKNPEQITSEADIVIAAAG  188 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~-L~-~~----ga~Vti~~~~-----------------------t~~l~~~~~~aDiVIsAtg  188 (269)
                      |+.|||+|.. |.+.+.. |+ ..    ..++.+.+..                       +.+..+.+++||+||.+.|
T Consensus         2 KIaiIGaGs~-g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           2 RIAVIGGGSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             EEEEETTTCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             EEEEECCCHH-HHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            6899999874 7777654 22 22    2368887543                       3467788999999999998


Q ss_pred             CCC
Q 024306          189 VAN  191 (269)
Q Consensus       189 ~p~  191 (269)
                      .+.
T Consensus        81 ~~~   83 (162)
T d1up7a1          81 PGG   83 (162)
T ss_dssp             TTH
T ss_pred             cCC
Confidence            653

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.70  E-value=0.03  Score=43.34  Aligned_cols=54  Identities=20%  Similarity=0.232  Sum_probs=44.2

Q ss_pred             CccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC-------------------------CCCHhhhcCCCCEEEecc
Q 024306          134 IMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL-------------------------TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       134 l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~-------------------------t~~l~~~~~~aDiVIsAt  187 (269)
                      |+|++|+.+|=+ .-|.+.++.++...|++++++...                         +.++.+.+++||+|.+..
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            689999999943 346999999999999999999653                         246778999999999755

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.69  E-value=0.015  Score=49.02  Aligned_cols=33  Identities=24%  Similarity=0.145  Sum_probs=30.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      |+|+|.|++|.+|+.++..|.++|++|+.+.|.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~   33 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVAR   33 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            789999999999999999999999999988765

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.69  E-value=0.027  Score=43.63  Aligned_cols=96  Identities=16%  Similarity=0.147  Sum_probs=56.9

Q ss_pred             cccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC--------------------C-
Q 024306          115 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK--------------------N-  172 (269)
Q Consensus       115 ~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~--------------------~-  172 (269)
                      .++|...-....+.+..---+|.+|+|+|+|+. |-.++.++...++ .|+++.++..                    + 
T Consensus         8 ~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~-g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~   86 (175)
T d1cdoa2           8 LLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAV-GLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEP   86 (175)
T ss_dssp             GGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSC
T ss_pred             HhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCc-cchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchh
Confidence            346654445555544433347889999999996 7777777888887 5777765421                    1 


Q ss_pred             Hhh---hc--CCCCEEEeccCCCCccc--CCCcCC-CcEEEEeeecC
Q 024306          173 PEQ---IT--SEADIVIAAAGVANLVR--GSWLKP-GAVVLDVGTCP  211 (269)
Q Consensus       173 l~~---~~--~~aDiVIsAtg~p~~i~--~~~~~~-g~vViDv~~~~  211 (269)
                      ..+   ..  ..+|++|.++|.+..+.  ..+.++ +.+++=++.++
T Consensus        87 ~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~  133 (175)
T d1cdoa2          87 ISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTD  133 (175)
T ss_dssp             HHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCS
T ss_pred             HHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecC
Confidence            111   11  35899999888654322  123344 45555455443

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.67  E-value=0.016  Score=42.88  Aligned_cols=35  Identities=26%  Similarity=0.362  Sum_probs=31.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      ..|+++|||+|-. |--+|.+|.+.|++||++.+..
T Consensus        22 ~p~~~vIiG~G~i-g~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          22 IPKRLTIIGGGII-GLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CCSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCeEEEECCCch-HHHHHHHHHhhCcceeEEEecc
Confidence            3589999999886 9999999999999999998764

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=94.65  E-value=0.019  Score=49.04  Aligned_cols=31  Identities=26%  Similarity=0.348  Sum_probs=28.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      ||+|+|++|.+|+.++..|.++|.+|+++.+
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            6999999999999999999999999998854

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.59  E-value=0.016  Score=47.17  Aligned_cols=35  Identities=14%  Similarity=0.202  Sum_probs=31.9

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      -.+|+|+|||+|-+ |..+|..|+++|.+|+++.+.
T Consensus        47 ~~~k~VvIIGaGpA-Gl~aA~~l~~~G~~v~l~E~~   81 (233)
T d1djqa3          47 KNKDSVLIVGAGPS-GSEAARVLMESGYTVHLTDTA   81 (233)
T ss_dssp             SSCCEEEEECCSHH-HHHHHHHHHHTTCEEEEECSS
T ss_pred             cCCceEEEEcccHH-HHHHHHHHHHhccceeeEeec
Confidence            47899999999998 999999999999999999654

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.013  Score=52.93  Aligned_cols=33  Identities=15%  Similarity=0.193  Sum_probs=29.3

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEe
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVH  167 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~  167 (269)
                      +++++|+|||+||. |-.+++.|+..|. ++++++
T Consensus        35 l~~~kVlvvG~Ggl-G~ei~k~L~~~Gvg~i~lvD   68 (426)
T d1yovb1          35 LDTCKVLVIGAGGL-GCELLKNLALSGFRQIHVID   68 (426)
T ss_dssp             HHHCCEEEECSSTT-HHHHHHHHHTTTCCCEEEEC
T ss_pred             HhcCeEEEECCCHH-HHHHHHHHHHcCCCeEEEEE
Confidence            35689999999996 9999999999997 699984

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.58  E-value=0.016  Score=46.98  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=30.8

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..+||+|||+|-+ |-.+|..|+++|.+|+|+.+.
T Consensus         3 ~~~kV~IiGaG~a-Gl~~A~~L~~~G~~v~v~Er~   36 (265)
T d2voua1           3 TTDRIAVVGGSIS-GLTAALMLRDAGVDVDVYERS   36 (265)
T ss_dssp             CCSEEEEECCSHH-HHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCcEEEECcCHH-HHHHHHHHHHCCCCEEEEeCC
Confidence            4578999999988 999999999999999999764

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.57  E-value=0.011  Score=42.84  Aligned_cols=38  Identities=13%  Similarity=0.059  Sum_probs=31.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .+++||+|+|||+|.+ |.=+|..|+....++++++++.
T Consensus        28 ~~f~gK~VlVVG~g~S-a~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          28 ELFVGESVLVVGGASS-ANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             GGGTTCCEEEECSSHH-HHHHHHHHTTTSCSSEEEECTT
T ss_pred             hhcCCCeEEEECCCCC-HHHHHHHHHHhcCEEEEEEecC
Confidence            3579999999999999 9999999988887776666553

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.55  E-value=0.034  Score=43.67  Aligned_cols=77  Identities=17%  Similarity=0.195  Sum_probs=52.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC---------------------CHhhh-----cCCCCEEEe
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---------------------NPEQI-----TSEADIVIA  185 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~---------------------~l~~~-----~~~aDiVIs  185 (269)
                      --.|.+|+|+|+|+. |..+++.+...|+ .|+++.+...                     .....     -..+|++|.
T Consensus        26 v~~G~~VlV~G~G~i-Gl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie  104 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCV-GLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLD  104 (174)
T ss_dssp             CCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred             CCCCCEEEEECCChH-HHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEE
Confidence            347899999999886 9999999999998 5777754421                     11111     145899999


Q ss_pred             ccCCCCccc--CCCcCCC-cEEEEeeec
Q 024306          186 AAGVANLVR--GSWLKPG-AVVLDVGTC  210 (269)
Q Consensus       186 Atg~p~~i~--~~~~~~g-~vViDv~~~  210 (269)
                      ++|.+..+.  -++++++ -.++=+|..
T Consensus       105 ~~G~~~~~~~a~~~~~~g~G~~v~vG~~  132 (174)
T d1e3ia2         105 CAGTAQTLKAAVDCTVLGWGSCTVVGAK  132 (174)
T ss_dssp             SSCCHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred             ecccchHHHHHHHHhhcCCeEEEecCCC
Confidence            999876543  3467664 344446654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.54  E-value=0.012  Score=45.87  Aligned_cols=32  Identities=19%  Similarity=0.106  Sum_probs=29.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      -.|+|||+|-+ |..+|..|+++|.+|+|+.++
T Consensus         6 yDviViGaG~~-Gl~~A~~La~~G~~V~vlE~~   37 (297)
T d2bcgg1           6 YDVIVLGTGIT-ECILSGLLSVDGKKVLHIDKQ   37 (297)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHH-HHHHHHHHHHCCCCEEEEcCC
Confidence            45899999988 999999999999999999775

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.50  E-value=0.026  Score=48.51  Aligned_cols=49  Identities=22%  Similarity=0.209  Sum_probs=39.0

Q ss_pred             CCHHHHHHHHHHh------------CCCCccceEEEEcCCcccHHHHHHHHHhCCCEEE-EEe
Q 024306          118 CTPKGCIELLIRS------------GVEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVS-IVH  167 (269)
Q Consensus       118 ~t~~g~~~~l~~~------------~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vt-i~~  167 (269)
                      +|++|++..+++.            ..+++||+|+|=|.|.+ |..+|+.|.+.|++|+ +..
T Consensus         6 ATG~GV~~~~~~~l~~~~~~~~~gl~~~L~gktvaIqGfGnV-G~~~A~~L~e~Gakvv~vsD   67 (293)
T d1hwxa1           6 ATGRGVFHGIENFIENASYMSILGMTPGFGDKTFAVQGFGNV-GLHSMRYLHRFGAKCVAVGE   67 (293)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHTCCSSSTTCEEEEECCSHH-HHHHHHHHHHTTCEEEEEEE
T ss_pred             HhHHHHHHHHHHHHHhcccchhccCCCCCCCCEEEEECCCHH-HHHHHHHHHHCCCEEEEEEc
Confidence            4778877766542            24789999999999885 9999999999999855 443

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.49  E-value=0.019  Score=47.72  Aligned_cols=48  Identities=23%  Similarity=0.263  Sum_probs=37.9

Q ss_pred             CCHHHHH----HHHHHhCCCCccceEEEEcCCcccHHHHHHHHHh-CCCEEEEE
Q 024306          118 CTPKGCI----ELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQR-HHATVSIV  166 (269)
Q Consensus       118 ~t~~g~~----~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~-~ga~Vti~  166 (269)
                      +|++|+.    +.+++.+.+++|++|+|=|.|.+ |..+++.|.+ .|+.|+.+
T Consensus         9 ATg~Gv~~~~~~~~~~~~~~l~g~~vaIqG~GnV-G~~~a~~L~~e~Ga~vv~v   61 (234)
T d1b26a1           9 ATGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNV-GQFAALLISQELGSKVVAV   61 (234)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCTTTCEEEEECCSHH-HHHHHHHHHHHHCCEEEEE
T ss_pred             hhhHHHHHHHHHHHHHcCCCcCCCEEEEECCCHH-HHHHHHHHHHhcCCceEEe
Confidence            3667765    45566788999999999999885 9999999975 59985543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.47  E-value=0.013  Score=45.81  Aligned_cols=31  Identities=19%  Similarity=0.305  Sum_probs=28.1

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  169 (269)
                      +|+|||+|-+ |-.+|..|+++|. +|+|+.+.
T Consensus         2 ~V~IIGaG~a-GL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMS-GISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHH-HHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECCcHH-HHHHHHHHHhCCCCcEEEEECC
Confidence            5999999998 9999999999996 79999765

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.40  E-value=0.016  Score=47.39  Aligned_cols=34  Identities=15%  Similarity=0.192  Sum_probs=31.0

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +.+|+|.|+++-+|+++++.|+++|++|.++.+.
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~   35 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLS   35 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            4679999999889999999999999999999876

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.38  E-value=0.008  Score=50.09  Aligned_cols=38  Identities=16%  Similarity=0.079  Sum_probs=32.7

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHh---CCCEEEEEeCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQR---HHATVSIVHALT  170 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~---~ga~Vti~~~~t  170 (269)
                      .|+||.++|-|++.-+|+++|+.|++   +|++|.++.|+.
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~   43 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSE   43 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCH
Confidence            47899999999987779999999986   789999998763

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.36  E-value=0.038  Score=40.50  Aligned_cols=37  Identities=27%  Similarity=0.333  Sum_probs=32.5

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +-..++++|||+|-+ |.-+|..|++.|++||++.+..
T Consensus        19 ~~~p~~i~IiG~G~i-g~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          19 QNVPGKLGVIGAGVI-GLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             SSCCSEEEEECCSHH-HHHHHHHHHHTTCEEEEEESSS
T ss_pred             ccCCCeEEEECCChH-HHHHHHHHHHcCCceEEEEeec
Confidence            345689999999886 9999999999999999998764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=94.35  E-value=0.013  Score=47.14  Aligned_cols=31  Identities=19%  Similarity=0.306  Sum_probs=28.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +|+|||+|-+ |-.+|..|+++|.+|+|+.+.
T Consensus         2 ~V~IIGaG~a-GL~aA~~L~~~G~~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGGGIS-GLAVAHHLRSRGTDAVLLESS   32 (347)
T ss_dssp             CEEEECCBHH-HHHHHHHHHTTTCCEEEECSS
T ss_pred             eEEEECCCHH-HHHHHHHHHhCCCCEEEEecC
Confidence            6999999888 999999999999999999764

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.32  E-value=0.041  Score=44.53  Aligned_cols=38  Identities=32%  Similarity=0.405  Sum_probs=32.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHH--------------------hCCC-EEEEEeCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQ--------------------RHHA-TVSIVHALT  170 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~--------------------~~ga-~Vti~~~~t  170 (269)
                      .++.||+|+|||.|.+ +.=+|++|+                    +.|+ +|+++.|+.
T Consensus        35 ~~~~gk~VvVIGgGNv-AlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          35 PDLSGARAVVIGNGNV-ALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             CCCCSSEEEEECCSHH-HHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             ccccCceEEEECCCch-hHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            5678999999999996 999998887                    5777 599998874

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.31  E-value=0.015  Score=45.53  Aligned_cols=72  Identities=11%  Similarity=0.165  Sum_probs=48.9

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCC-------------------------HhhhcCCCCEEEeccCCCCc
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKN-------------------------PEQITSEADIVIAAAGVANL  192 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~-------------------------l~~~~~~aDiVIsAtg~p~~  192 (269)
                      +|-|||.|.+ |.++|+.|.+.|.+|++++|+...                         +...+..++.++........
T Consensus         3 kIGvIGlG~M-G~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           3 DVGVVGLGVM-GANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             EEEEEeehHH-HHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            5899999997 999999999999999999886311                         11233445555544443221


Q ss_pred             c------cCCCcCCCcEEEEeeec
Q 024306          193 V------RGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       193 i------~~~~~~~g~vViDv~~~  210 (269)
                      +      -...++++.+++|....
T Consensus        82 ~~~~~~~~~~~~~~~~iii~~st~  105 (178)
T d1pgja2          82 TDSTIEQLKKVFEKGDILVDTGNA  105 (178)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECCCC
T ss_pred             hhhhhhhhhhhccccceecccCcc
Confidence            1      11246788999998854

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.27  E-value=0.023  Score=48.07  Aligned_cols=33  Identities=18%  Similarity=0.033  Sum_probs=30.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      |+++|.|++|.+|+.++..|.++|.+|+.+.+.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            789999999999999999999999999988763

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.25  E-value=0.017  Score=50.32  Aligned_cols=32  Identities=34%  Similarity=0.537  Sum_probs=29.6

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEe
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVH  167 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~  167 (269)
                      |++|+|.|++|.+|..++..|+++|.+|++++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            79999999999999999999999999999874

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.13  E-value=0.047  Score=42.70  Aligned_cols=53  Identities=21%  Similarity=0.182  Sum_probs=35.3

Q ss_pred             eEEEEcCCcccH--HHHHHHHHhCC----CEEEEEeCC----------------------------CCCHhhhcCCCCEE
Q 024306          138 NAVVIGRSNIVG--LPTSLLLQRHH----ATVSIVHAL----------------------------TKNPEQITSEADIV  183 (269)
Q Consensus       138 ~v~ViG~gg~vg--~~~a~~L~~~g----a~Vti~~~~----------------------------t~~l~~~~~~aDiV  183 (269)
                      |++|||+|.. |  ..++..++...    .++.+....                            +.+..+.+++||+|
T Consensus         3 KI~iIGaGs~-~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           3 KIATIGGGSS-YTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEETTTCT-THHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             EEEEECCChh-hHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            6899999753 4  34444444432    257777532                            23567788999999


Q ss_pred             EeccCCCC
Q 024306          184 IAAAGVAN  191 (269)
Q Consensus       184 IsAtg~p~  191 (269)
                      |+++|.+.
T Consensus        82 v~ta~~~~   89 (169)
T d1s6ya1          82 TTQFRVGG   89 (169)
T ss_dssp             EECCCTTH
T ss_pred             EEccccCC
Confidence            99998653

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.09  E-value=0.041  Score=42.66  Aligned_cols=95  Identities=16%  Similarity=0.160  Sum_probs=58.6

Q ss_pred             cccCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCCC---------------------C
Q 024306          115 FIPCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALTK---------------------N  172 (269)
Q Consensus       115 ~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t~---------------------~  172 (269)
                      .++|...-....+.+..---+|.+|+|+|+||. |-.+++++...|+ +|.++.+...                     .
T Consensus         8 ~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~-G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~   86 (176)
T d2jhfa2           8 LIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGV-GLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKP   86 (176)
T ss_dssp             GGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSC
T ss_pred             HhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCc-HHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhH
Confidence            346655444544444443447999999999996 8889999999986 6777754421                     1


Q ss_pred             Hhhh-----cCCCCEEEeccCCCCccc--CCCcCCC-cEEEEeeec
Q 024306          173 PEQI-----TSEADIVIAAAGVANLVR--GSWLKPG-AVVLDVGTC  210 (269)
Q Consensus       173 l~~~-----~~~aDiVIsAtg~p~~i~--~~~~~~g-~vViDv~~~  210 (269)
                      ..+.     -..+|++|.++|.+..+.  .++++.+ ..++=.+..
T Consensus        87 ~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~  132 (176)
T d2jhfa2          87 IQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVP  132 (176)
T ss_dssp             HHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCC
T ss_pred             HHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCC
Confidence            1111     135899999999866432  2345553 344333433

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.04  E-value=0.017  Score=42.82  Aligned_cols=35  Identities=31%  Similarity=0.414  Sum_probs=31.6

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      -.|+++|||+|-. |--+|..|.++|++||++++..
T Consensus        24 ~p~~~viiG~G~i-glE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          24 IPKKLVVIGAGYI-GLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             CCSEEEESCCSHH-HHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCeEEEEccchH-HHHHHHHHHhcCCeEEEEEEcc
Confidence            3589999999876 9999999999999999998864

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.88  E-value=0.023  Score=45.25  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=32.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .+++||+|+|||+|.+ |-=+|..++..++.++.+.+.
T Consensus        28 ~~~~gK~V~VvG~G~S-a~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSS-GIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CCCBTCEEEEECCSHH-HHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCCCEEEEECCCcc-HHHHHHHHHhhhccccccccc
Confidence            4689999999999999 999999999999987776554

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.84  E-value=0.032  Score=41.52  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=32.4

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .+||+|+|+|.|.. +---|..|.+...+|+++||..
T Consensus        25 ~~~k~V~VvGgGds-A~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          25 YRNQKVAVIGGGNT-AVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             GTTSEEEEECSSHH-HHHHHHHHTTTSSEEEEECSSS
T ss_pred             hCCCEEEEECCCHH-HHHHHHHHhhcCCcEEEEeecc
Confidence            58999999999998 8888888988878899999875

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=93.68  E-value=0.011  Score=48.65  Aligned_cols=52  Identities=15%  Similarity=0.243  Sum_probs=37.3

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC---C------HhhhcC--CCCEEEeccCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK---N------PEQITS--EADIVIAAAGV  189 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~---~------l~~~~~--~aDiVIsAtg~  189 (269)
                      +|+|.|++|.+|+.++..|.++|..|.+..+...   +      +.+.++  +.|+||...+.
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~~v~~~~~~~~~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSEEEEECTTCSSSCCCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEECCCccccCcCCCHHHHHHHHHHcCCCEEEEeccc
Confidence            6999999999999999999998865555433321   1      234444  35999987763

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.64  E-value=0.073  Score=43.29  Aligned_cols=53  Identities=21%  Similarity=0.255  Sum_probs=39.8

Q ss_pred             CCCCccceEEEEcCCcccHHHHHHHHHh--------------------CCC-EEEEEeCCC--------CCHhhhcCCCC
Q 024306          131 GVEIMGKNAVVIGRSNIVGLPTSLLLQR--------------------HHA-TVSIVHALT--------KNPEQITSEAD  181 (269)
Q Consensus       131 ~~~l~gk~v~ViG~gg~vg~~~a~~L~~--------------------~ga-~Vti~~~~t--------~~l~~~~~~aD  181 (269)
                      ..+++||+|+|||.|.+ +.=+|..|.+                    .|+ +|+++.|+.        +++.+.....+
T Consensus        34 ~~~~~gk~VvVIGgGNV-AlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~  112 (225)
T d1cjca1          34 APDLSCDTAVILGQGNV-ALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPG  112 (225)
T ss_dssp             CCCTTSSEEEEESCSHH-HHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTT
T ss_pred             CccccCceEEEECCchh-HHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhCCCCchhhhcccccCC
Confidence            35678999999999986 9999999887                    476 699998875        23455555555


Q ss_pred             EEE
Q 024306          182 IVI  184 (269)
Q Consensus       182 iVI  184 (269)
                      +-+
T Consensus       113 ~~~  115 (225)
T d1cjca1         113 TRP  115 (225)
T ss_dssp             EEE
T ss_pred             Ccc
Confidence            444

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.63  E-value=0.041  Score=42.22  Aligned_cols=54  Identities=13%  Similarity=0.121  Sum_probs=44.4

Q ss_pred             CccceEEEEcCC--cccHHHHHHHHHhCCCEEEEEeCC---------------------CCCHhhhcCCCCEEEecc
Q 024306          134 IMGKNAVVIGRS--NIVGLPTSLLLQRHHATVSIVHAL---------------------TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       134 l~gk~v~ViG~g--g~vg~~~a~~L~~~ga~Vti~~~~---------------------t~~l~~~~~~aDiVIsAt  187 (269)
                      ++|++|+++|=+  +-|.+.++.+|...|++++++...                     +.++.+.+++||+|.+..
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~   78 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTR   78 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECC
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeec
Confidence            689999999984  346899999999999999998643                     246778899999988655

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.024  Score=46.71  Aligned_cols=34  Identities=12%  Similarity=0.321  Sum_probs=30.7

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHA  168 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~  168 (269)
                      |++++|+|+|.||. |.+++..|+..|. ++++++.
T Consensus        28 L~~~~VliiG~Ggl-Gs~va~~La~~Gvg~i~lvD~   62 (247)
T d1jw9b_          28 LKDSRVLIVGLGGL-GCAASQYLASAGVGNLTLLDF   62 (247)
T ss_dssp             HHHCEEEEECCSHH-HHHHHHHHHHHTCSEEEEECC
T ss_pred             HhCCCEEEECCCHH-HHHHHHHHHHcCCCeEEEECC
Confidence            67899999999996 9999999999997 7999854

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.61  E-value=0.045  Score=42.76  Aligned_cols=52  Identities=13%  Similarity=0.124  Sum_probs=35.6

Q ss_pred             cCCHHHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024306          117 PCTPKGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (269)
Q Consensus       117 p~t~~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  169 (269)
                      .|...-....+.+..---.|.+|+|+|+|+. |..+++.+...|+ +|+++.+.
T Consensus         9 gCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgv-Gl~a~~~ak~~G~~~Vi~~d~~   61 (174)
T d1p0fa2           9 GCGFATGYGAAVNTAKVTPGSTCAVFGLGGV-GFSAIVGCKAAGASRIIGVGTH   61 (174)
T ss_dssp             GTHHHHHHHHHHTTTCCCTTCEEEEECCSHH-HHHHHHHHHHHTCSEEEEECSC
T ss_pred             hhHHHHHHHHHHHhhCCCCCCEEEEECCCch-hHHHHHHHHHcCCceeeccCCh
Confidence            3433333333333333457999999999885 9999999999997 57777554

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=93.58  E-value=0.061  Score=42.50  Aligned_cols=76  Identities=17%  Similarity=0.094  Sum_probs=47.8

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCCC----------------------CHhhhcCCCCEEEeccCCCC-
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALTK----------------------NPEQITSEADIVIAAAGVAN-  191 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t~----------------------~l~~~~~~aDiVIsAtg~p~-  191 (269)
                      .-||.|+|++|.+|.-+.++|.++- .+++.+.+.+.                      .......++|+++.|++.-. 
T Consensus         5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s   84 (183)
T d2cvoa1           5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTT   84 (183)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHH
T ss_pred             ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchH
Confidence            3469999999999999999998764 36555543310                      11234578999999998522 


Q ss_pred             -cccCCCcCCCcEEEEeeecC
Q 024306          192 -LVRGSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       192 -~i~~~~~~~g~vViDv~~~~  211 (269)
                       .+-+...+.+.+|+|.+..+
T Consensus        85 ~~~~~~l~~~~~~v~~~~~~~  105 (183)
T d2cvoa1          85 QEIIKGLPQELKIVDLSADFR  105 (183)
T ss_dssp             HHHHHTSCSSCEEEECSSTTT
T ss_pred             HHHHHHHHhcCcccccchhhh
Confidence             12223344455555544444

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.58  E-value=0.067  Score=42.35  Aligned_cols=55  Identities=18%  Similarity=0.232  Sum_probs=45.3

Q ss_pred             CCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC-------------------------CCCHhhhcCCCCEEEec
Q 024306          133 EIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL-------------------------TKNPEQITSEADIVIAA  186 (269)
Q Consensus       133 ~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~-------------------------t~~l~~~~~~aDiVIsA  186 (269)
                      +|+|.+|+.+|-+ .-|.+.++.++...|+++++|+..                         +.++.+.+++||+|.+.
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            4789999999954 457999999999999999999653                         24567889999999865


Q ss_pred             c
Q 024306          187 A  187 (269)
Q Consensus       187 t  187 (269)
                      +
T Consensus        82 ~   82 (185)
T d1dxha2          82 V   82 (185)
T ss_dssp             C
T ss_pred             h
Confidence            5

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.56  E-value=0.04  Score=42.87  Aligned_cols=56  Identities=13%  Similarity=0.161  Sum_probs=46.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC-------------------------CCCHhhhcCCCCEEEecc
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL-------------------------TKNPEQITSEADIVIAAA  187 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~-------------------------t~~l~~~~~~aDiVIsAt  187 (269)
                      +|+|++|+++|-+..|.+.++.++...|++++++...                         +.++.+.++.||+|.+.+
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~   80 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT   80 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence            4789999999998888889999899999999988653                         245678899999999765


Q ss_pred             C
Q 024306          188 G  188 (269)
Q Consensus       188 g  188 (269)
                      -
T Consensus        81 ~   81 (170)
T d1otha2          81 W   81 (170)
T ss_dssp             S
T ss_pred             e
Confidence            3

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.56  E-value=0.02  Score=44.87  Aligned_cols=33  Identities=9%  Similarity=0.261  Sum_probs=30.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      ++++|+|||+|-+ |..+|..|++.|.+|+++++
T Consensus         4 k~~dVvIIGGGpa-Gl~AA~~~ar~g~~v~iie~   36 (190)
T d1trba1           4 KHSKLLILGSGPA-GYTAAVYAARANLQPVLITG   36 (190)
T ss_dssp             EEEEEEEECCSHH-HHHHHHHHHTTTCCCEEECC
T ss_pred             CCCcEEEECCCHH-HHHHHHHHHHcCCceEEEEe
Confidence            6789999999998 99999999999999999964

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.48  E-value=0.022  Score=42.41  Aligned_cols=37  Identities=16%  Similarity=0.293  Sum_probs=32.3

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +-..++++|||+|-. |--+|..|.+.|.+||++++..
T Consensus        23 ~~~p~~vvIiGgG~I-G~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          23 KEVPGKLLIIGGGII-GLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CCCCSEEEEESCSHH-HHHHHHHHHHHTCEEEEECSSS
T ss_pred             cccCCeEEEECCCHH-HHHHHHHhhcCCCEEEEEEeec
Confidence            334689999999876 9999999999999999998764

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.46  E-value=0.049  Score=40.16  Aligned_cols=34  Identities=18%  Similarity=0.209  Sum_probs=30.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..++++|||+|-+ |.-+|..|.+.|++||++.+.
T Consensus        19 ~P~~vvIIGgG~i-G~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGASYV-ALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECCSHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCeEEEECCCcc-HHHHHHHHhhcCCeEEEEEec
Confidence            4578999999886 999999999999999999764

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.43  E-value=0.028  Score=46.03  Aligned_cols=31  Identities=26%  Similarity=0.387  Sum_probs=28.5

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +|+|||+|-+ |..+|..|+++|.+|+|+.+.
T Consensus         6 DvvIIGaGi~-Gls~A~~La~~G~~V~vlE~~   36 (276)
T d1ryia1           6 EAVVIGGGII-GSAIAYYLAKENKNTALFESG   36 (276)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            5999999887 999999999999999999764

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.39  E-value=0.032  Score=47.55  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=28.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~  169 (269)
                      |+|+|||+|-+ |-.+|..|+++|.  +|+++.+.
T Consensus         5 KrVaIIGaG~s-Gl~~A~~L~~~~~~~~v~vfEk~   38 (335)
T d2gv8a1           5 RKIAIIGAGPS-GLVTAKALLAEKAFDQVTLFERR   38 (335)
T ss_dssp             CEEEEECCSHH-HHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CeEEEECcCHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence            78999999998 9999999988774  89999765

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.37  E-value=0.043  Score=42.27  Aligned_cols=35  Identities=17%  Similarity=0.200  Sum_probs=30.4

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT  170 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t  170 (269)
                      -+++|+|||+|.+ |.=.|..+.++|| +|++++|.+
T Consensus        44 ~~~kVvVIGGGdt-A~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGAGDT-AFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECSSHH-HHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECCChh-HHHHHHHHHHcCCcceeEEEeCC
Confidence            4778999999997 9999999999998 598998864

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.26  E-value=0.031  Score=44.59  Aligned_cols=33  Identities=12%  Similarity=0.173  Sum_probs=28.4

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCC-------CEEEEEeCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHH-------ATVSIVHAL  169 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~g-------a~Vti~~~~  169 (269)
                      ..+|+|||+|-+ |-.+|..|+++|       .+|+|+.+.
T Consensus         2 p~~VaVIGaGpa-GL~aA~~L~~~G~~~~~~~~~V~v~E~~   41 (239)
T d1lqta2           2 PYYIAIVGSGPS-AFFAAASLLKAADTTEDLDMAVDMLEML   41 (239)
T ss_dssp             CEEEEEECCSHH-HHHHHHHHHHHHHHSTTCCEEEEEEESS
T ss_pred             CcEEEEECcCHH-HHHHHHHHHHcCCccccCCCceEEEecC
Confidence            368999999999 999999999887       479999653

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.24  E-value=0.037  Score=46.89  Aligned_cols=33  Identities=15%  Similarity=0.096  Sum_probs=29.9

Q ss_pred             ceE-EEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNA-VVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v-~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      |+| +|.|++|.+|+.++..|.++|++|+.+.|.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~   34 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRR   34 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            678 899999999999999999999999988663

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.20  E-value=0.045  Score=43.73  Aligned_cols=63  Identities=21%  Similarity=0.221  Sum_probs=42.9

Q ss_pred             HHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC-------------------CCCHh----hhc--CC
Q 024306          126 LLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL-------------------TKNPE----QIT--SE  179 (269)
Q Consensus       126 ~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~-------------------t~~l~----~~~--~~  179 (269)
                      .++..++ -.|.+|+|+|+|+. |..+++++..+|+ .|.++.+.                   ..++.    +.+  ..
T Consensus        17 a~~~a~v-~~G~tVlV~GaG~v-Gl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g   94 (195)
T d1kola2          17 GAVTAGV-GPGSTVYVAGAGPV-GLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPE   94 (195)
T ss_dssp             HHHHTTC-CTTCEEEEECCSHH-HHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSC
T ss_pred             HHHHhCC-CCCCEEEEECcCHH-HHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCC
Confidence            3444444 36899999999875 9888888888898 57776543                   12222    222  24


Q ss_pred             CCEEEeccCCC
Q 024306          180 ADIVIAAAGVA  190 (269)
Q Consensus       180 aDiVIsAtg~p  190 (269)
                      +|++|.++|.+
T Consensus        95 ~D~vid~vG~~  105 (195)
T d1kola2          95 VDCAVDAVGFE  105 (195)
T ss_dssp             EEEEEECCCTT
T ss_pred             cEEEEECcccc
Confidence            79999999843

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.19  E-value=0.047  Score=43.70  Aligned_cols=31  Identities=29%  Similarity=0.389  Sum_probs=26.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRH--HATVSIVHAL  169 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~  169 (269)
                      +|+|||+|-+ |..+|..|.+.  |++|+|+.+.
T Consensus         3 kv~iIGaGpa-Gl~aA~~L~~~~~~~~V~v~e~~   35 (230)
T d1cjca2           3 QICVVGSGPA-GFYTAQHLLKHHSRAHVDIYEKQ   35 (230)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHHCSSCEEEEECSS
T ss_pred             eEEEECccHH-HHHHHHHHHhcCCCCeEEEEeCC
Confidence            7999999998 99999988654  6799999654

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.036  Score=47.17  Aligned_cols=31  Identities=19%  Similarity=0.251  Sum_probs=29.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEe
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVH  167 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~  167 (269)
                      |||+|.|++|.+|+.++..|.++|.+|+.+.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld   33 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVID   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEE
Confidence            7899999999999999999999999998874

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.033  Score=46.14  Aligned_cols=31  Identities=26%  Similarity=0.403  Sum_probs=28.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .|+|||+|-+ |..+|..|+++|.+|+|+.+.
T Consensus         1 DViVIGaG~a-GL~aA~~L~~~G~~V~VlE~~   31 (383)
T d2v5za1           1 DVVVVGGGIS-GMAAAKLLHDSGLNVVVLEAR   31 (383)
T ss_dssp             SEEEECCBHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHH-HHHHHHHHHhCCCCEEEEecC
Confidence            4899999988 999999999999999999764

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.94  E-value=0.057  Score=42.60  Aligned_cols=51  Identities=29%  Similarity=0.421  Sum_probs=38.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC--------------------------------CCHhhhcCCCCEEEe
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT--------------------------------KNPEQITSEADIVIA  185 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t--------------------------------~~l~~~~~~aDiVIs  185 (269)
                      +|.|||.|-. |.|+|..|+ +|.+|+..+...                                .+......++|+++.
T Consensus         2 kI~ViGlG~v-Gl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           2 KIAVAGSGYV-GLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             EEEEECCSHH-HHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             EEEEECCChh-HHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            6899999875 999998775 699999885331                                122344577999998


Q ss_pred             ccCCC
Q 024306          186 AAGVA  190 (269)
Q Consensus       186 Atg~p  190 (269)
                      +||.|
T Consensus        80 ~vpt~   84 (196)
T d1dlja2          80 ATPTN   84 (196)
T ss_dssp             CCCCC
T ss_pred             cCCcc
Confidence            88865

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=92.90  E-value=0.041  Score=45.58  Aligned_cols=31  Identities=19%  Similarity=0.147  Sum_probs=25.3

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          139 AVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       139 v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|.|+++-+|+++|+.|+++|++|.++.++
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga~V~i~~~~   35 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHR   35 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            3555776656999999999999999988654

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.87  E-value=0.047  Score=46.42  Aligned_cols=35  Identities=14%  Similarity=0.078  Sum_probs=31.6

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      .+-|+++|.|++|.+|+.++..|.++|.+|+.+.+
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            35689999999999999999999999999998854

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=92.80  E-value=0.087  Score=40.33  Aligned_cols=53  Identities=17%  Similarity=0.231  Sum_probs=40.9

Q ss_pred             CccceEEEEcCCcc--cHHHHHHHHHhCCCEEEEEeCC-------------------CCCHhhhcCCCCEEEec
Q 024306          134 IMGKNAVVIGRSNI--VGLPTSLLLQRHHATVSIVHAL-------------------TKNPEQITSEADIVIAA  186 (269)
Q Consensus       134 l~gk~v~ViG~gg~--vg~~~a~~L~~~ga~Vti~~~~-------------------t~~l~~~~~~aDiVIsA  186 (269)
                      |+|++|+++|-+.-  |++.++.+|...|++++++...                   +.++.+.+++||+|.+.
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT   74 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEe
Confidence            57999999998664  6999999999999986554221                   13677889999998743

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=92.80  E-value=0.045  Score=47.14  Aligned_cols=32  Identities=19%  Similarity=0.120  Sum_probs=29.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      |.|+|.|++|.+|+.++..|.++|.+|+.+.|
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r   33 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKR   33 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            77889999999999999999999999998876

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=92.61  E-value=0.055  Score=41.64  Aligned_cols=54  Identities=17%  Similarity=0.188  Sum_probs=43.6

Q ss_pred             CccceEEEEcC--CcccHHHHHHHHHhCCCEEEEEeCCC-----------CCHhhhcCCCCEEEecc
Q 024306          134 IMGKNAVVIGR--SNIVGLPTSLLLQRHHATVSIVHALT-----------KNPEQITSEADIVIAAA  187 (269)
Q Consensus       134 l~gk~v~ViG~--gg~vg~~~a~~L~~~ga~Vti~~~~t-----------~~l~~~~~~aDiVIsAt  187 (269)
                      ++|.+|+++|-  ++-|++.++.++...|++++++....           .++.+.+++||+|.+..
T Consensus         1 F~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~~~~~~~~~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           1 FKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEENTFGTYVSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhccccceeEEEechhccccCceeeeeE
Confidence            47899999997  43369999999999999999886542           35678999999988654

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=92.55  E-value=0.056  Score=45.16  Aligned_cols=31  Identities=6%  Similarity=0.166  Sum_probs=28.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEe
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVH  167 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~  167 (269)
                      .||+|.|++|.+|+.++..|.++|.+|+.+.
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~~V~~id   31 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGIDLIVFD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEE
Confidence            3799999999999999999999999999875

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=92.49  E-value=0.097  Score=44.20  Aligned_cols=52  Identities=15%  Similarity=0.202  Sum_probs=40.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC----------------------CCH-hhhcCCCCEEEeccCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT----------------------KNP-EQITSEADIVIAAAGV  189 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t----------------------~~l-~~~~~~aDiVIsAtg~  189 (269)
                      ||+|.|++|.+|+.++..|.++| .+|+.+++.+                      .++ +...+++|+||...+.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~   77 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI   77 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccccc
Confidence            69999999999999999999998 5888875432                      111 2356779999977764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.44  E-value=0.06  Score=43.40  Aligned_cols=32  Identities=19%  Similarity=0.347  Sum_probs=28.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHALT  170 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~t  170 (269)
                      +|+|||+|-+ |-.+|..|++.|. +|+|+.+..
T Consensus         3 ~V~IvGaG~a-Gl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIG-GLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHH-HHHHHHHHHhCCCCeEEEEeCCC
Confidence            7999999988 9999999999995 899998753

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=92.41  E-value=0.042  Score=45.95  Aligned_cols=53  Identities=15%  Similarity=0.199  Sum_probs=39.1

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------CHhhhc--CCCCEEEeccC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------NPEQIT--SEADIVIAAAG  188 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------~l~~~~--~~aDiVIsAtg  188 (269)
                      -|+|+|.|++|.+|+.++..|.++|..|.++.+..+       .+.+.+  ...|.|+.+.+
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~a~   63 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAA   63 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTTCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchhccccCHHHHHHHHhhcCCCEEEEcch
Confidence            378999999999999999999999998777643321       122332  34688887765

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=92.38  E-value=0.059  Score=41.84  Aligned_cols=70  Identities=14%  Similarity=0.303  Sum_probs=48.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhC-CCE-EEEEeCCC-----------CCHhhhcCCCCEEEeccCC-CCc-ccCCCcCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRH-HAT-VSIVHALT-----------KNPEQITSEADIVIAAAGV-ANL-VRGSWLKPG  201 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~-ga~-Vti~~~~t-----------~~l~~~~~~aDiVIsAtg~-p~~-i~~~~~~~g  201 (269)
                      -||.|+|.|.+ |+..+..|.+. +.+ |.+++++.           .+......+.|+|+.+|+. .|+ +-...++.|
T Consensus         4 irvgiiG~G~i-g~~~~~~l~~~~~~elvav~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a~~aL~aG   82 (170)
T d1f06a1           4 IRVAIVGYGNL-GRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDIPEQAPKFAQF   82 (170)
T ss_dssp             EEEEEECCSHH-HHHHHHHHTTCSSEEEEEEEESSSCCSSSSCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHHHHHTTT
T ss_pred             ceEEEECChHH-HHHHHHHHHhCCCcEEEEEEecccccccccccccchhhhhhccccceEEEeCCCcccHHHHHHHHHCC
Confidence            47999999886 99999988765 356 44666552           2345667889999999984 343 334456778


Q ss_pred             cEEEEe
Q 024306          202 AVVLDV  207 (269)
Q Consensus       202 ~vViDv  207 (269)
                      .-||+.
T Consensus        83 ~~vv~~   88 (170)
T d1f06a1          83 ACTVDT   88 (170)
T ss_dssp             SEEECC
T ss_pred             CcEEEe
Confidence            766653

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.35  E-value=0.072  Score=39.91  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=31.2

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .+||+|+|+|.|.. +---|..|++.-.+|+++||..
T Consensus        32 frgk~V~VvGgGds-A~e~A~~L~~~a~~V~li~r~~   67 (130)
T d1vdca2          32 FRNKPLAVIGGGDS-AMEEANFLTKYGSKVYIIHRRD   67 (130)
T ss_dssp             GTTSEEEEECCSHH-HHHHHHHHTTTSSEEEEECSSS
T ss_pred             hCCCEEEEEcCchH-HHHHHHHHhCCCCcEEEEEecc
Confidence            58999999999998 7777788887777899999975

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.32  E-value=0.058  Score=44.27  Aligned_cols=35  Identities=17%  Similarity=0.127  Sum_probs=29.5

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC--EEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA--TVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga--~Vti~~~~  169 (269)
                      +.|+|+|.|++.-+|+++|+.|+++|+  .|..+.|+
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~   38 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD   38 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESS
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCC
Confidence            468999999988889999999999997  46666655

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.30  E-value=0.041  Score=42.13  Aligned_cols=31  Identities=19%  Similarity=0.244  Sum_probs=26.9

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEE
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIV  166 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~  166 (269)
                      ++++|+|||+|-+ |.-+|..|.++|++|+++
T Consensus         2 ~~~~VvIIGgG~~-G~e~A~~l~~~g~~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVGTGLA-GVEVAFGLRASGWEGNIR   32 (185)
T ss_dssp             CSCEEEEECCSHH-HHHHHHHHHHTTCCSEEE
T ss_pred             CCCCEEEECCcHH-HHHHHHHHHHcCCceEEE
Confidence            4789999999887 999999999999876655

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.23  E-value=0.063  Score=45.74  Aligned_cols=32  Identities=19%  Similarity=0.220  Sum_probs=29.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      |.|+|.|++|.+|+.++..|.++|++|+++.+
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            67899999999999999999999999998853

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=92.20  E-value=0.077  Score=39.33  Aligned_cols=36  Identities=25%  Similarity=0.358  Sum_probs=31.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .+||+|+|+|.|.. +---|..|++...+|++++|..
T Consensus        28 ~~gk~V~VvGgG~s-A~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2          28 FKGKRVAVIGGGNS-GVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             GBTCEEEEECCSHH-HHHHHHHHHTTBSEEEEECSSS
T ss_pred             cCCceEEEEeCCHH-HHHHHHhhhccCCceEEEeccc
Confidence            68999999999998 7777888888867899999875

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.02  Score=47.96  Aligned_cols=35  Identities=20%  Similarity=0.220  Sum_probs=28.2

Q ss_pred             ccceEEEE-cCCcccHHHHHHHHHhC-CCEEEEEeCC
Q 024306          135 MGKNAVVI-GRSNIVGLPTSLLLQRH-HATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~Vi-G~gg~vg~~~a~~L~~~-ga~Vti~~~~  169 (269)
                      +||+|+|| |++.=+|+++|+.|+++ |++|.++.|+
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~   37 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARD   37 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECC
Confidence            58999665 55555699999999886 8899999876

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=92.17  E-value=0.16  Score=39.53  Aligned_cols=54  Identities=26%  Similarity=0.285  Sum_probs=37.4

Q ss_pred             ceEEEEcCCcccHHHHHH--HHHhC----CCEEEEEeCC--------------------------CCCHhhhcCCCCEEE
Q 024306          137 KNAVVIGRSNIVGLPTSL--LLQRH----HATVSIVHAL--------------------------TKNPEQITSEADIVI  184 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~--~L~~~----ga~Vti~~~~--------------------------t~~l~~~~~~aDiVI  184 (269)
                      -|+.|||+|.. |.+.+.  .|+..    +.++.+.+..                          +.++.+.+++||+||
T Consensus         3 mKI~iIGaGsv-g~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           3 VKIGIIGAGSA-VFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CEEEEETTTCH-HHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             cEEEEECCCHH-HhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            47999999765 765432  23322    2378888543                          246788999999999


Q ss_pred             eccCCCC
Q 024306          185 AAAGVAN  191 (269)
Q Consensus       185 sAtg~p~  191 (269)
                      ++++.+.
T Consensus        82 ~~~~~g~   88 (171)
T d1obba1          82 NTAMVGG   88 (171)
T ss_dssp             ECCCTTH
T ss_pred             eeccccc
Confidence            9988654

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=92.11  E-value=0.078  Score=43.62  Aligned_cols=30  Identities=30%  Similarity=0.303  Sum_probs=25.4

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          139 AVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       139 v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      |+|.|+++-+|+++|+.|+++|++|.+..+
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga~V~i~~~   33 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGCKVLVNYA   33 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence            567788777899999999999999988643

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=92.11  E-value=0.052  Score=44.66  Aligned_cols=33  Identities=15%  Similarity=0.250  Sum_probs=26.4

Q ss_pred             ceE-EEEcCCcccHHHHHHHHHhCCCE-------EEEEeCC
Q 024306          137 KNA-VVIGRSNIVGLPTSLLLQRHHAT-------VSIVHAL  169 (269)
Q Consensus       137 k~v-~ViG~gg~vg~~~a~~L~~~ga~-------Vti~~~~  169 (269)
                      |+| +|.|++.-+|+++|+.|+++|++       |.++.|+
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~   41 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRT   41 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCC
Confidence            564 56688777799999999999986       7777665

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.06  E-value=0.047  Score=46.14  Aligned_cols=32  Identities=13%  Similarity=0.267  Sum_probs=29.2

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      +++|||+|-+ |-.+|..|+++|.+|+|+.++.
T Consensus         3 dv~IIGaG~s-Gl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLF-GAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHH-HHHHHHHHGGGTCCEEEECSSS
T ss_pred             cEEEECCcHH-HHHHHHHHHhCCCcEEEEECCC
Confidence            6899999998 9999999999999999997653

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.75  E-value=0.12  Score=40.81  Aligned_cols=51  Identities=20%  Similarity=0.219  Sum_probs=38.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC---------------------------------CCHhhhcCCCCEE
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT---------------------------------KNPEQITSEADIV  183 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t---------------------------------~~l~~~~~~aDiV  183 (269)
                      ||.|.|.|.+ ||.+++.|..+. .+|.-++...                                 .++.....++|+|
T Consensus         3 KVaINGfGRI-GR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiV   81 (178)
T d1b7go1           3 NVAVNGYGTI-GKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (178)
T ss_dssp             EEEEECCSHH-HHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEECCCHH-HHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEE
Confidence            6899999997 999999998765 5655554331                                 1334555689999


Q ss_pred             EeccCC
Q 024306          184 IAAAGV  189 (269)
Q Consensus       184 IsAtg~  189 (269)
                      |.+||.
T Consensus        82 iecTG~   87 (178)
T d1b7go1          82 VDTTPN   87 (178)
T ss_dssp             EECCST
T ss_pred             EECCCC
Confidence            999996

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=91.73  E-value=0.12  Score=40.56  Aligned_cols=55  Identities=15%  Similarity=0.095  Sum_probs=44.5

Q ss_pred             CCccceEEEEcCC-cccHHHHHHHHHhCCCEEEEEeCC-------------------------CCCHhhhcCCCCEEEec
Q 024306          133 EIMGKNAVVIGRS-NIVGLPTSLLLQRHHATVSIVHAL-------------------------TKNPEQITSEADIVIAA  186 (269)
Q Consensus       133 ~l~gk~v~ViG~g-g~vg~~~a~~L~~~ga~Vti~~~~-------------------------t~~l~~~~~~aDiVIsA  186 (269)
                      .++|.+++.+|-+ ..|.+.++.++...|+++++|...                         +.++.+.++++|+|.+.
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            4788999999965 456899999999999999999653                         24567899999999865


Q ss_pred             c
Q 024306          187 A  187 (269)
Q Consensus       187 t  187 (269)
                      +
T Consensus        82 ~   82 (183)
T d1duvg2          82 V   82 (183)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=91.68  E-value=0.059  Score=44.77  Aligned_cols=31  Identities=16%  Similarity=0.193  Sum_probs=27.6

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  169 (269)
                      +|+|||+|-+ |-.+|..|+++|. +|+++.+.
T Consensus         3 dViIIGaGi~-G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIV-GTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHH-HHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHcCCCcEEEEeCC
Confidence            6999999886 9999999999996 69999765

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=91.63  E-value=0.14  Score=42.70  Aligned_cols=52  Identities=29%  Similarity=0.318  Sum_probs=40.1

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC-------CHhhhcCCCCEEE-eccC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK-------NPEQITSEADIVI-AAAG  188 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~-------~l~~~~~~aDiVI-sAtg  188 (269)
                      ...+|++|+|||.   +  |....+.+++++++|+.++.+       .-.+.+.+||+|| |++.
T Consensus       118 ~~~~g~kV~vIG~---~--P~v~~l~~~~~~~~VlE~~p~~gd~p~~~~~~lLp~aD~viiTGsT  177 (251)
T d2h1qa1         118 NEVKGKKVGVVGH---F--PHLESLLEPICDLSILEWSPEEGDYPLPASEFILPECDYVYITCAS  177 (251)
T ss_dssp             TTTTTSEEEEESC---C--TTHHHHHTTTSEEEEEESSCCTTCEEGGGHHHHGGGCSEEEEETHH
T ss_pred             cccCCCEEEEEec---c--hhHHHHHhcCCcEEEEeCCCCCCCCCchHHHHhhhcCCEEEEEech
Confidence            4457999999998   3  677778889999999988752       2456789999988 5543

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=91.47  E-value=0.066  Score=43.66  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=29.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      .+|+|||+|-+ |..+|..|+++|.+|+|+.+..
T Consensus         5 ~DViIIGaG~a-Gl~aA~~la~~G~~V~vlEk~~   37 (253)
T d2gqfa1           5 SENIIIGAGAA-GLFCAAQLAKLGKSVTVFDNGK   37 (253)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHTTCCEEEECSSS
T ss_pred             CcEEEECcCHH-HHHHHHHHHHCCCcEEEEecCC
Confidence            46999999998 9999999999999999997653

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=91.34  E-value=0.073  Score=43.59  Aligned_cols=31  Identities=19%  Similarity=0.498  Sum_probs=28.3

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .|+|||+|-+ |-.+|..|+++|.+|+++.+.
T Consensus         5 DvvIIGaGi~-Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVGAGSM-GMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            5899999887 999999999999999999765

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=91.29  E-value=0.13  Score=38.75  Aligned_cols=51  Identities=18%  Similarity=0.283  Sum_probs=39.1

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC----------------------C---H-hhhcCCCCEEEeccCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK----------------------N---P-EQITSEADIVIAAAGV  189 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~----------------------~---l-~~~~~~aDiVIsAtg~  189 (269)
                      +++|+|.|.. |+.++..|.++|..|+++.....                      +   | ..-+.+||.+|.+++.
T Consensus         5 HiII~G~g~~-g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~   81 (153)
T d1id1a_           5 HFIVCGHSIL-AINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             CEEEECCSHH-HHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred             EEEEECCCHH-HHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEcccc
Confidence            5999999986 99999999999998888754320                      1   1 2346778888888874

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.13  E-value=0.061  Score=42.11  Aligned_cols=33  Identities=6%  Similarity=0.148  Sum_probs=29.6

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      +.++|+|||+|-+ |..+|..|++.|.+|.++.+
T Consensus         4 ~~~~VvIIGgGpa-Gl~aA~~~ar~g~~v~vie~   36 (192)
T d1vdca1           4 HNTRLCIVGSGPA-AHTAAIYAARAELKPLLFEG   36 (192)
T ss_dssp             EEEEEEEECCSHH-HHHHHHHHHHTTCCCEEECC
T ss_pred             ccceEEEECCCHH-HHHHHHHHHHcCCcEEEEEe
Confidence            4689999999998 99999999999999988853

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=91.06  E-value=0.075  Score=42.68  Aligned_cols=31  Identities=23%  Similarity=0.290  Sum_probs=28.1

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .|+|||+|-+ |..+|..|+++|.+|+++.+.
T Consensus         4 DViIIGaG~a-Gl~aA~~la~~G~~V~liEk~   34 (251)
T d2i0za1           4 DVIVIGGGPS-GLMAAIGAAEEGANVLLLDKG   34 (251)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            5899999987 999999999999999999654

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.92  E-value=0.064  Score=43.79  Aligned_cols=31  Identities=19%  Similarity=0.260  Sum_probs=28.1

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          139 AVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       139 v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++|.|+++-+|+++|+.|+++|++|.++.++
T Consensus         4 AlVTGas~GIG~aia~~la~~G~~Vvi~~r~   34 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGFRVVVHYRH   34 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            6788988878999999999999999999876

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.89  E-value=0.094  Score=42.89  Aligned_cols=34  Identities=12%  Similarity=0.061  Sum_probs=29.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHH---hCCCEEEEEeCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQ---RHHATVSIVHALT  170 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~---~~ga~Vti~~~~t  170 (269)
                      |+|+|.|++.-+|+++|+.|+   ++|++|.++.|+.
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~   39 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNR   39 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            789999997778999999885   5789999998874

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=90.88  E-value=0.07  Score=44.01  Aligned_cols=32  Identities=22%  Similarity=0.233  Sum_probs=28.9

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +++|-|+++-+|+++|..|+++|++|.++.++
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~   33 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDES   33 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGG
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            68899998888999999999999999998765

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=90.87  E-value=0.14  Score=42.99  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=29.1

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..|+|||+|.+ |..+|..|+++|++|.++.+.
T Consensus        24 ~DVvVIG~G~a-Gl~aA~~la~~G~~V~llEk~   55 (322)
T d1d4ca2          24 TDVVIIGSGGA-GLAAAVSARDAGAKVILLEKE   55 (322)
T ss_dssp             CSEEEECSSHH-HHHHHHHHHTTTCCEEEECSS
T ss_pred             ceEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            46999999998 999999999999999999754

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=90.75  E-value=0.046  Score=46.60  Aligned_cols=30  Identities=23%  Similarity=0.401  Sum_probs=26.5

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEE
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIV  166 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~  166 (269)
                      |+|+|.|++|.||+.++..|.++|..|+++
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~   32 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVT   32 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEE
Confidence            789999999999999999999999765444

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.75  E-value=0.063  Score=44.20  Aligned_cols=31  Identities=23%  Similarity=0.294  Sum_probs=28.5

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +|+|||+|-+ |-.+|..|+++|.+|+|+.+.
T Consensus         4 ~V~IvGaGp~-Gl~~A~~L~~~G~~v~vlE~~   34 (292)
T d1k0ia1           4 QVAIIGAGPS-GLLLGQLLHKAGIDNVILERQ   34 (292)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECcCHH-HHHHHHHHHHCCCCEEEEeCC
Confidence            6999999876 999999999999999999765

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.43  E-value=0.17  Score=37.65  Aligned_cols=48  Identities=15%  Similarity=0.187  Sum_probs=36.1

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEE-EeCCCCCHhhhcCCCCEEEeccC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSI-VHALTKNPEQITSEADIVIAAAG  188 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti-~~~~t~~l~~~~~~aDiVIsAtg  188 (269)
                      |+.|.|++|-+|+.++..+.+++.++.. .++.   ..+.+.++|+||.-+.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~---~~~~~~~~DVvIDFS~   50 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN---GVEELDSPDVVIDFSS   50 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT---EEEECSCCSEEEECSC
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC---cHHHhccCCEEEEecC
Confidence            6899998555599999999999987543 3332   3456788999997765

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.11  E-value=0.18  Score=37.88  Aligned_cols=38  Identities=18%  Similarity=0.212  Sum_probs=30.5

Q ss_pred             CCCccceEEEE--cCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          132 VEIMGKNAVVI--GRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       132 ~~l~gk~v~Vi--G~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      ....++.++|+  |+|- +|-.+|..|+++|++||++.+..
T Consensus        35 ~~~~~~~vvi~d~ggg~-ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          35 KKKIGKRVVILNADTYF-MAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             CSCCCSEEEEEECCCSS-HHHHHHHHHHHTTCEEEEEESSC
T ss_pred             ccccCCceEEEecCCCh-HHHHHHHHHHHcCCeEEEEecCC
Confidence            33457778887  6555 59999999999999999998763

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=90.02  E-value=0.11  Score=43.00  Aligned_cols=36  Identities=19%  Similarity=0.390  Sum_probs=30.6

Q ss_pred             CCccceEEEEcCCcccHHHHHHHHHh-CCCEEEEEeCC
Q 024306          133 EIMGKNAVVIGRSNIVGLPTSLLLQR-HHATVSIVHAL  169 (269)
Q Consensus       133 ~l~gk~v~ViG~gg~vg~~~a~~L~~-~ga~Vti~~~~  169 (269)
                      ......|+|||+|-+ |..+|..|++ .|.+|+++.+.
T Consensus        30 ~~~e~DViVIGaGpa-GL~aA~~LA~~~G~~V~vlE~~   66 (278)
T d1rp0a1          30 TYAETDVVVVGAGSA-GLSAAYEISKNPNVQVAIIEQS   66 (278)
T ss_dssp             HHTEEEEEEECCSHH-HHHHHHHHHTSTTSCEEEEESS
T ss_pred             cccCCCEEEECCCHH-HHHHHHHHHHccCCeEEEEecC
Confidence            446788999999998 9999999987 49999999754

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=89.95  E-value=0.1  Score=43.40  Aligned_cols=33  Identities=18%  Similarity=0.318  Sum_probs=29.4

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .-.|+|||+|-+ |..+|..|+++|++|+++.+.
T Consensus        16 ~~DVlVIG~G~a-Gl~aA~~la~~G~~V~lvEK~   48 (308)
T d1y0pa2          16 TVDVVVVGSGGA-GFSAAISATDSGAKVILIEKE   48 (308)
T ss_dssp             ECSEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEECcCHH-HHHHHHHHHHCCCcEEEEecC
Confidence            346999999998 999999999999999999754

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.87  E-value=0.48  Score=34.32  Aligned_cols=53  Identities=13%  Similarity=0.131  Sum_probs=40.6

Q ss_pred             ceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCCEEEeccCC
Q 024306          137 KNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~aDiVIsAtg~  189 (269)
                      |+|.|||+|   +-.|.-+.+.|.+.|.+|+-+|.+.         +++.+.-..-|+++-.++.
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~vp~   66 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPP   66 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCH
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEEEEeCH
Confidence            789999977   3358888888999999999998764         3455555566888877774

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.82  E-value=0.13  Score=43.49  Aligned_cols=34  Identities=18%  Similarity=0.238  Sum_probs=30.2

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +..+|+|||+|-+ |..+|..|.++|.+|+|+.+.
T Consensus         6 ~~~dV~IIGAG~s-Gl~~a~~L~~~G~~v~i~Ek~   39 (298)
T d1w4xa1           6 EEVDVLVVGAGFS-GLYALYRLRELGRSVHVIETA   39 (298)
T ss_dssp             SEEEEEEECCSHH-HHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECccHH-HHHHHHHHHhCCCCEEEEEcC
Confidence            4568999999998 999999999999999999653

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=89.70  E-value=0.14  Score=41.86  Aligned_cols=35  Identities=23%  Similarity=0.187  Sum_probs=29.3

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  169 (269)
                      .+++++|.|+++-+|+++++.|+++|+ .|.++.|+
T Consensus         8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~   43 (259)
T d2fr1a1           8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRS   43 (259)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESS
T ss_pred             CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            356899999877789999999999998 47777664

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=89.69  E-value=0.35  Score=39.40  Aligned_cols=72  Identities=21%  Similarity=0.154  Sum_probs=51.8

Q ss_pred             Ccc-ceEEEEcCCcccHHHHHHHHHhC------CCEEEEEeCCC-C------------------CHhhhcCCCCEEEecc
Q 024306          134 IMG-KNAVVIGRSNIVGLPTSLLLQRH------HATVSIVHALT-K------------------NPEQITSEADIVIAAA  187 (269)
Q Consensus       134 l~g-k~v~ViG~gg~vg~~~a~~L~~~------ga~Vti~~~~t-~------------------~l~~~~~~aDiVIsAt  187 (269)
                      ++| |+|.|||.|-- |++=|..|.+.      |..|+|--|.. +                  +..+++++||+|.-.+
T Consensus        41 ~kg~KkIaViGYGsQ-G~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLl  119 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQ-APAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLI  119 (226)
T ss_dssp             TTTCSEEEEECCSSH-HHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECS
T ss_pred             hcCCCEEEEEEeccH-HHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEec
Confidence            688 99999999887 99999999984      45688775442 1                  2457889999999999


Q ss_pred             CC---CCccc--CCCcCCCcEEEE
Q 024306          188 GV---ANLVR--GSWLKPGAVVLD  206 (269)
Q Consensus       188 g~---p~~i~--~~~~~~g~vViD  206 (269)
                      +-   +....  ...+++|..+.-
T Consensus       120 PDe~Q~~vy~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         120 SDSAQADNYEKVFSHMKPNSILGL  143 (226)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             chHHHHHHHHHHHHhcCCCceeee
Confidence            82   22221  025788876543

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.69  E-value=0.52  Score=33.68  Aligned_cols=66  Identities=15%  Similarity=0.115  Sum_probs=46.4

Q ss_pred             HHHHHHHHhCCCCccceEEEEc----------CCcccHHHHHHHHHhCCCEEEEEeCC------------CCCHhhhcCC
Q 024306          122 GCIELLIRSGVEIMGKNAVVIG----------RSNIVGLPTSLLLQRHHATVSIVHAL------------TKNPEQITSE  179 (269)
Q Consensus       122 g~~~~l~~~~~~l~gk~v~ViG----------~gg~vg~~~a~~L~~~ga~Vti~~~~------------t~~l~~~~~~  179 (269)
                      -+++.|++...  ..|+|.|+|          |.-. ...++..|.+.|++|.++...            ..++.+.+..
T Consensus         3 ~ii~~l~~~~~--~~k~I~ilGl~fK~n~dD~R~Sp-~i~ii~~L~~~g~~v~iyDP~v~~~~~~~~~~~~~~l~~~~~~   79 (108)
T d1dlja3           3 QIINVLKEQES--PVKVVGVYRLIMKSNSDNFRESA-IKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQ   79 (108)
T ss_dssp             HHHHHHTTSCC--SSCEEEEECCCSSTTCSCCTTCH-HHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHH
T ss_pred             HHHHHHHhccC--CCCEEEEEEEEECCCCcchhhhh-HHHHHHHHhccccceeeecCCcChhHhccCCEEEeCHHHHHhh
Confidence            35566654433  336899999          3233 677888999999999998643            1367788889


Q ss_pred             CCEEEeccCCC
Q 024306          180 ADIVIAAAGVA  190 (269)
Q Consensus       180 aDiVIsAtg~p  190 (269)
                      +|+||..+...
T Consensus        80 sDiII~~~~~~   90 (108)
T d1dlja3          80 ANIIVTNRYDN   90 (108)
T ss_dssp             CSEEECSSCCG
T ss_pred             CCEEEEcCCch
Confidence            99988766543

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.58  E-value=0.42  Score=35.37  Aligned_cols=56  Identities=25%  Similarity=0.236  Sum_probs=41.7

Q ss_pred             CccceEEEEcCC---cccHHHHHHHHHhCC-CEEEEEeCCC---------CCHhhhcCCCCEEEeccCC
Q 024306          134 IMGKNAVVIGRS---NIVGLPTSLLLQRHH-ATVSIVHALT---------KNPEQITSEADIVIAAAGV  189 (269)
Q Consensus       134 l~gk~v~ViG~g---g~vg~~~a~~L~~~g-a~Vti~~~~t---------~~l~~~~~~aDiVIsAtg~  189 (269)
                      ++.|+|+|||+|   +..|..+.+.|.+.+ .+|+-+|.+.         +++.+.=...|+++.+++.
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~G~~~y~sl~dlp~~vDlvvi~vp~   74 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQGVKAYKSVKDIPDEIDLAIIVVPK   74 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEETTEECBSSTTSCSSCCSEEEECSCH
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccCCeEeecchhhcCCCCceEEEecCh
Confidence            577999999987   556888888887766 4899998764         2444444567888877774

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=89.46  E-value=0.15  Score=38.92  Aligned_cols=31  Identities=10%  Similarity=0.296  Sum_probs=28.1

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .|+|||+|-+ |..+|..+++.|.+|+++++.
T Consensus         3 DViIIGgGpa-Gl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPA-GAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHH-HHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHH-HHHHHHHHHHcCCeEEEEEEe
Confidence            6899999998 999999999999999999753

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.24  E-value=0.19  Score=42.86  Aligned_cols=32  Identities=9%  Similarity=0.066  Sum_probs=27.4

Q ss_pred             cceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeC
Q 024306          136 GKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       136 gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      +|-++|-|+|   |+ |+++|+.|+++||+|.++.+
T Consensus         2 ~kVAlITGaa~s~GI-G~aiA~~la~~GA~V~i~~~   36 (329)
T d1uh5a_           2 EDICFIAGIGDTNGY-GWGIAKELSKRNVKIIFGIW   36 (329)
T ss_dssp             CCEEEEECCSSSSSH-HHHHHHHHHHTTCEEEEEEC
T ss_pred             CcEEEEeCCCCCChH-HHHHHHHHHHcCCEEEEEeC
Confidence            5778999954   65 99999999999999998754

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=89.07  E-value=0.31  Score=38.01  Aligned_cols=74  Identities=14%  Similarity=0.115  Sum_probs=47.4

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC----------------------------------CCHhhhcCCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT----------------------------------KNPEQITSEAD  181 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t----------------------------------~~l~~~~~~aD  181 (269)
                      .||.|.|.|.+ ||.++++|..+. .+|.-++...                                  .++.+...++|
T Consensus         3 irIaINGfGRI-GR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD   81 (172)
T d2czca2           3 VKVGVNGYGTI-GKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD   81 (172)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred             EEEEEECCCHH-HHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCC
Confidence            47999999997 999999987665 4544333211                                  13445567899


Q ss_pred             EEEeccCCCCc--ccCCCcCCCcEEEEeeecC
Q 024306          182 IVIAAAGVANL--VRGSWLKPGAVVLDVGTCP  211 (269)
Q Consensus       182 iVIsAtg~p~~--i~~~~~~~g~vViDv~~~~  211 (269)
                      +||.+||.-.-  -...+++.|+-.|=++-++
T Consensus        82 vViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~  113 (172)
T d2czca2          82 IIVDATPGGIGAKNKPLYEKAGVKAIFQGGEK  113 (172)
T ss_dssp             EEEECCSTTHHHHHHHHHHHHTCEEEECTTSC
T ss_pred             EEEECCCCCCCHHHHHHHHHcCCCEEEECCCC
Confidence            99999997221  1122455666555555443

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.88  E-value=0.17  Score=39.85  Aligned_cols=32  Identities=16%  Similarity=0.222  Sum_probs=28.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..|+|||+|-+ |..+|..+++.|.+|+++.+.
T Consensus         6 yDviVIG~GpA-Gl~aA~~aa~~G~kV~lie~~   37 (233)
T d1v59a1           6 HDVVIIGGGPA-GYVAAIKAAQLGFNTACVEKR   37 (233)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             cCEEEECCCHH-HHHHHHHHHHCCCcEEEEEec
Confidence            46999999998 999999999999999999754

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.75  E-value=0.61  Score=34.93  Aligned_cols=63  Identities=17%  Similarity=0.061  Sum_probs=47.2

Q ss_pred             HHHHHHHHHhCCCCccceEEEEcCC---cccHHHHHHHHHhCCCEEEEEeCCC---------CCHhhhcCCCCEEEeccC
Q 024306          121 KGCIELLIRSGVEIMGKNAVVIGRS---NIVGLPTSLLLQRHHATVSIVHALT---------KNPEQITSEADIVIAAAG  188 (269)
Q Consensus       121 ~g~~~~l~~~~~~l~gk~v~ViG~g---g~vg~~~a~~L~~~ga~Vti~~~~t---------~~l~~~~~~aDiVIsAtg  188 (269)
                      ..+.++|.      +-|+|+|||+|   +-.|.-++..|.+.|.+|+-+|.+.         +++.+.-..-|+++-.++
T Consensus        10 ~~i~~~L~------~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i~vp   83 (139)
T d2d59a1          10 EDIREILT------RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVK   83 (139)
T ss_dssp             HHHHHHHH------HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSC
T ss_pred             HHHHHHHh------cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEEEEeC
Confidence            44555553      45899999987   4458889999999999999998774         345555556788887777


Q ss_pred             C
Q 024306          189 V  189 (269)
Q Consensus       189 ~  189 (269)
                      .
T Consensus        84 ~   84 (139)
T d2d59a1          84 P   84 (139)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.63  E-value=0.28  Score=36.30  Aligned_cols=35  Identities=17%  Similarity=0.102  Sum_probs=28.6

Q ss_pred             ccceEEEEcCCcccHHHHHHHHH----hCCCEEEEEeCCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQ----RHHATVSIVHALT  170 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~----~~ga~Vti~~~~t  170 (269)
                      ++|+++|||+|-+ |--+|..|.    +.|.+|+++++..
T Consensus        36 ~~k~i~IvGgG~~-G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          36 EVKSITIIGGGFL-GSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             HCSEEEEECCSHH-HHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCEEEEECCCHH-HHHHHHHHHHHHHhcCCEEEEecccc
Confidence            4689999999886 988888775    4688999998754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.53  E-value=0.17  Score=39.69  Aligned_cols=31  Identities=13%  Similarity=0.160  Sum_probs=28.3

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++|||+|-+ |..+|..+++.|.+|+++.+.
T Consensus         4 DvvVIG~G~a-G~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSG-GIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHH-HHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCCHH-HHHHHHHHHHCCCEEEEEecc
Confidence            5899999998 999999999999999999653

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.27  E-value=0.4  Score=34.43  Aligned_cols=36  Identities=8%  Similarity=0.106  Sum_probs=28.1

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHh---CCCEEEEEeCCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQR---HHATVSIVHALT  170 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~---~ga~Vti~~~~t  170 (269)
                      -..++++|||+|-+ |--+|..|..   ++.+||++++..
T Consensus        18 ~~p~~v~ivGgG~i-g~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          18 EPPRRVLTVGGGFI-SVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             SCCSEEEEECSSHH-HHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             hcCCeEEEECCcHH-HHHHHHHhhhcccCCcEEEEEeccc
Confidence            34689999999886 9998876654   456899998764

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=88.21  E-value=0.24  Score=38.63  Aligned_cols=52  Identities=21%  Similarity=0.242  Sum_probs=37.6

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCC-CEEEEEeCCC----------------------------------CCHhhhcCCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHH-ATVSIVHALT----------------------------------KNPEQITSEAD  181 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~g-a~Vti~~~~t----------------------------------~~l~~~~~~aD  181 (269)
                      ++|.|-|.|.+ ||.++++|..++ .+|..++...                                  .++.+...++|
T Consensus         2 ~~VgINGfGRI-GR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vD   80 (171)
T d1cf2o1           2 KAVAINGYGTV-GKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEAD   80 (171)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCS
T ss_pred             eEEEEEcCcHH-HHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCC
Confidence            47899999987 999999887776 4555443221                                  12335567899


Q ss_pred             EEEeccCC
Q 024306          182 IVIAAAGV  189 (269)
Q Consensus       182 iVIsAtg~  189 (269)
                      +||.+||.
T Consensus        81 vViEcTG~   88 (171)
T d1cf2o1          81 IVIDCTPE   88 (171)
T ss_dssp             EEEECCST
T ss_pred             EEEEccCC
Confidence            99999996

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=88.18  E-value=0.17  Score=42.40  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=28.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      -.|+|||+|.+ |..+|..|+++|++|.++...
T Consensus         6 ~DVvVIG~G~A-Gl~AAl~aa~~G~~V~liEK~   37 (336)
T d2bs2a2           6 CDSLVIGGGLA-GLRAAVATQQKGLSTIVLSLI   37 (336)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHTTTCCEEEECSS
T ss_pred             cCEEEECcCHH-HHHHHHHHHHCCCCEEEEecC
Confidence            35999999998 999999999999999999654

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=87.95  E-value=0.46  Score=36.11  Aligned_cols=55  Identities=11%  Similarity=0.138  Sum_probs=41.6

Q ss_pred             CccceEEEEcCCcc--cHHHHHHHHHhCCC-EEEEEeCC---------------------CCCHhhhcCCCCEEEeccC
Q 024306          134 IMGKNAVVIGRSNI--VGLPTSLLLQRHHA-TVSIVHAL---------------------TKNPEQITSEADIVIAAAG  188 (269)
Q Consensus       134 l~gk~v~ViG~gg~--vg~~~a~~L~~~ga-~Vti~~~~---------------------t~~l~~~~~~aDiVIsAtg  188 (269)
                      ++|.+|+.+|=+.-  |++.++.+|...|. .+++|...                     +.++.+.+++||+|.+...
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~   80 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV   80 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeecc
Confidence            67999999997664  68888888888864 56777422                     3467788999999986543

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=87.95  E-value=0.36  Score=34.52  Aligned_cols=38  Identities=13%  Similarity=0.180  Sum_probs=29.3

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHh---CCCEEEEEeCCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQR---HHATVSIVHALT  170 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~---~ga~Vti~~~~t  170 (269)
                      .+-..|+++|||+|-+ |--+|..|.+   .|..|+++.+..
T Consensus        14 l~~~p~~v~IiGgG~i-g~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          14 LDEAPKRALCVGGGYI-SIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSSCCSEEEEECSSHH-HHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             ccccCCeEEEECCChH-HHHHHHHhHhhcccccccceecccc
Confidence            3334689999999886 9999876554   478999998753

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=87.91  E-value=0.12  Score=39.78  Aligned_cols=73  Identities=21%  Similarity=0.280  Sum_probs=45.2

Q ss_pred             ceEEEEcCCcccHHH-HHHHHHhCC-CEEE-EEeCCCC-----------------CHhhh-----cCCCCEEEeccCCC-
Q 024306          137 KNAVVIGRSNIVGLP-TSLLLQRHH-ATVS-IVHALTK-----------------NPEQI-----TSEADIVIAAAGVA-  190 (269)
Q Consensus       137 k~v~ViG~gg~vg~~-~a~~L~~~g-a~Vt-i~~~~t~-----------------~l~~~-----~~~aDiVIsAtg~p-  190 (269)
                      -++.|||+|+. |+- +...|.+.. .++. ++.|+..                 .+.+.     ..+.|+|+.||+.. 
T Consensus         5 irvaIIGaG~i-g~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~   83 (157)
T d1nvmb1           5 LKVAIIGSGNI-GTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASA   83 (157)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHH
T ss_pred             cEEEEEcCcHH-HHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchh
Confidence            47999999886 764 556665443 4644 4554421                 11111     23579999999842 


Q ss_pred             C---cccCCCcCCCcEEEEeeec
Q 024306          191 N---LVRGSWLKPGAVVLDVGTC  210 (269)
Q Consensus       191 ~---~i~~~~~~~g~vViDv~~~  210 (269)
                      |   .......+.|..|||....
T Consensus        84 h~~~~~~~~aa~~G~~VID~s~a  106 (157)
T d1nvmb1          84 HVQNEALLRQAKPGIRLIDLTPA  106 (157)
T ss_dssp             HHHHHHHHHHHCTTCEEEECSTT
T ss_pred             HHHhHHHHHHHHcCCEEEEcccc
Confidence            2   1233446889999998854

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.75  E-value=0.18  Score=39.46  Aligned_cols=32  Identities=13%  Similarity=0.182  Sum_probs=28.7

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ..|+|||+|-+ |..+|..+++.|.+|+++.+.
T Consensus         4 yDvvVIGgGpa-Gl~aA~~aa~~G~kV~vie~~   35 (221)
T d1dxla1           4 NDVVIIGGGPG-GYVAAIKAAQLGFKTTCIEKR   35 (221)
T ss_dssp             CCEEEECCSHH-HHHHHHHHHHHTCCEEEEECS
T ss_pred             CCEEEECCCHH-HHHHHHHHHHCCCcEEEEEec
Confidence            46899999998 999999999999999999654

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.59  E-value=0.15  Score=42.74  Aligned_cols=30  Identities=27%  Similarity=0.324  Sum_probs=23.2

Q ss_pred             ceEEEE-cCCcccHHHHHHHHHhCCCEEEEE
Q 024306          137 KNAVVI-GRSNIVGLPTSLLLQRHHATVSIV  166 (269)
Q Consensus       137 k~v~Vi-G~gg~vg~~~a~~L~~~ga~Vti~  166 (269)
                      |+|++| |++.=+|+++|..|+++|++|..+
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v   32 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKV   32 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEE
Confidence            566655 876667999999999999975443

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=87.56  E-value=0.15  Score=42.80  Aligned_cols=34  Identities=24%  Similarity=0.356  Sum_probs=30.1

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      +...|+|||+|.+ |..+|..|+++|++|.++.+.
T Consensus        18 e~~DVvVIGaG~a-Gl~AA~~aa~~G~~V~vlEK~   51 (317)
T d1qo8a2          18 ETTQVLVVGAGSA-GFNASLAAKKAGANVILVDKA   51 (317)
T ss_dssp             EEEEEEEECCSHH-HHHHHHHHHHHTCCEEEECSS
T ss_pred             CccCEEEECcCHH-HHHHHHHHHHCCCcEEEEeCC
Confidence            3567999999998 999999999999999999654

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.23  E-value=0.23  Score=38.80  Aligned_cols=31  Identities=19%  Similarity=0.292  Sum_probs=27.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      ..++|||+|-+ |..+|..+++.|.+|+++.+
T Consensus         4 ~DviVIG~Gpa-Gl~aA~~aar~G~kV~vIEk   34 (223)
T d1ebda1           4 TETLVVGAGPG-GYVAAIRAAQLGQKVTIVEK   34 (223)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHTTCCEEEEES
T ss_pred             CCEEEECCCHH-HHHHHHHHHHCCCEEEEEec
Confidence            46899999988 99999999999999999954

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=87.22  E-value=0.25  Score=39.27  Aligned_cols=33  Identities=21%  Similarity=0.274  Sum_probs=29.5

Q ss_pred             cceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .-.++|||+|-+ |..+|..|+++|.+|+++.+.
T Consensus         6 dyDviIIG~GPa-GlsaA~~aa~~G~~V~viE~~   38 (229)
T d1ojta1           6 EYDVVVLGGGPG-GYSAAFAAADEGLKVAIVERY   38 (229)
T ss_dssp             EEEEEEECCSHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             ccCEEEECcCHH-HHHHHHHHHHCCCeEEEEecc
Confidence            456999999998 999999999999999999753

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.64  E-value=0.18  Score=39.74  Aligned_cols=31  Identities=13%  Similarity=0.189  Sum_probs=28.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      .+++|||+|-+ |..+|..+++.|.+|+++.+
T Consensus         6 ~DlvVIG~Gpa-Gl~aA~~aa~~G~~V~liE~   36 (220)
T d1lvla1           6 TTLLIIGGGPG-GYVAAIRAGQLGIPTVLVEG   36 (220)
T ss_dssp             CSEEEECCSHH-HHHHHHHHHHHTCCEEEECS
T ss_pred             cCEEEECCCHH-HHHHHHHHHHCCCcEEEEec
Confidence            46899999887 99999999999999999864

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.49  E-value=0.88  Score=32.65  Aligned_cols=49  Identities=16%  Similarity=0.194  Sum_probs=36.5

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCCCHhhhcCCCCEEEe
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTKNPEQITSEADIVIA  185 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~~l~~~~~~aDiVIs  185 (269)
                      ..+.+|.|+|+|.. ||-++....+.|.++.++......-  ..+-||-.+.
T Consensus         9 ~~~~kigIlGgGQL-~rMla~aA~~lG~~v~v~d~~~~~P--A~~va~~~i~   57 (111)
T d1kjqa2           9 PAATRVMLLGSGEL-GKEVAIECQRLGVEVIAVDRYADAP--AMHVAHRSHV   57 (111)
T ss_dssp             TTCCEEEEESCSHH-HHHHHHHHHTTTCEEEEEESSTTCG--GGGGSSEEEE
T ss_pred             CCCCEEEEEeCCHH-HHHHHHHHHHCCCEEEEEcCCCCCc--hhhcCCeEEE
Confidence            35678999999886 9999999999999999998764432  2233454443

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.20  E-value=0.31  Score=36.39  Aligned_cols=31  Identities=16%  Similarity=0.300  Sum_probs=25.8

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .||+|||+|-+ |--+|..|. ++.+|+++++.
T Consensus         1 ~rVvIIGgG~~-G~e~A~~l~-~~~~Vtvv~~~   31 (167)
T d1xhca1           1 SKVVIVGNGPG-GFELAKQLS-QTYEVTVIDKE   31 (167)
T ss_dssp             CEEEEECCSHH-HHHHHHHHT-TTSEEEEECSS
T ss_pred             CeEEEECCcHH-HHHHHHHHH-cCCCEEEEecc
Confidence            37999999887 999999886 46799999753

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.11  E-value=0.51  Score=32.03  Aligned_cols=33  Identities=18%  Similarity=0.068  Sum_probs=29.6

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALT  170 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t  170 (269)
                      |+|.|+|+|.. ||=++......|.++.+.....
T Consensus         2 k~vgIlG~GQL-grMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQL-GRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHH-HHHHHHHHGGGTEEEEEECTTS
T ss_pred             CEEEEEcCCHH-HHHHHHHHHHcCCEEEEEcCCC
Confidence            78999999996 9999999999999999997654

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.05  E-value=0.042  Score=43.64  Aligned_cols=24  Identities=38%  Similarity=0.556  Sum_probs=21.6

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCE
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHAT  162 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~  162 (269)
                      ||+|||+|-+ |..+|..|+++|.+
T Consensus         2 kV~VIGaGi~-GlstA~~L~~~G~~   25 (246)
T d1kifa1           2 RVVVIGAGVI-GLSTALCIHERYHS   25 (246)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHHHTT
T ss_pred             EEEEECchHH-HHHHHHHHHHCCCC
Confidence            6999999876 99999999999864

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=85.97  E-value=0.21  Score=42.89  Aligned_cols=29  Identities=7%  Similarity=0.225  Sum_probs=25.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEE
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIV  166 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~  166 (269)
                      +|+|.|++|.+|+.++..|++.|..|+++
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~   30 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVN   30 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEE
Confidence            69999999999999999999999875544

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.72  E-value=0.26  Score=38.98  Aligned_cols=30  Identities=17%  Similarity=0.297  Sum_probs=27.9

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEe
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVH  167 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~  167 (269)
                      -.|+|||+|-+ |..+|..+++.|.+|.++.
T Consensus         4 YDviVIG~Gpa-Gl~aA~~aa~~G~kV~viE   33 (235)
T d1h6va1           4 FDLIIIGGGSG-GLAAAKEAAKFDKKVMVLD   33 (235)
T ss_dssp             EEEEEECCSHH-HHHHHHHHGGGCCCEEEEC
T ss_pred             CCEEEECCCHH-HHHHHHHHHHCCCeEEEEe
Confidence            46899999998 9999999999999999996

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.44  E-value=0.18  Score=40.76  Aligned_cols=48  Identities=15%  Similarity=0.051  Sum_probs=32.8

Q ss_pred             HHHHHHHHHhCCCCccceEEEE-cCCcc--cHHHHHHHHHhCCCEEEEEeC
Q 024306          121 KGCIELLIRSGVEIMGKNAVVI-GRSNI--VGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       121 ~g~~~~l~~~~~~l~gk~v~Vi-G~gg~--vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      .++.+.+.+.--+.+.++|+|+ |.|..  =|-.+|+.|.++|++|+++..
T Consensus        25 ~~~a~~i~~~~~~~~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~~V~v~~~   75 (211)
T d2ax3a2          25 ISVVLAMEEELGNLSDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFL   75 (211)
T ss_dssp             HHHHHHHHHHHSCCTTCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEEC
T ss_pred             HHHHHHHHHhcccccCCcEEEEECCCCCchhHHHHHHHHHhcCCeeEEEec
Confidence            5566666654445667776665 54432  267888999999999988854

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.13  E-value=1.2  Score=33.11  Aligned_cols=50  Identities=18%  Similarity=0.179  Sum_probs=33.0

Q ss_pred             eEEEEcCCcccHHHHHHHHHh-CCCEEE-EEeCCCCCHhhh-cCCCCEEEeccC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQR-HHATVS-IVHALTKNPEQI-TSEADIVIAAAG  188 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~-~ga~Vt-i~~~~t~~l~~~-~~~aDiVIsAtg  188 (269)
                      ||.|+|++|-+|+.++..+.+ .+.++. .+.+. ..+... ..++|+||.-+.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~-~~~~~~~~~~~DvvIDFS~   53 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG-DPLSLLTDGNTEVVIDFTH   53 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT-CCTHHHHTTTCSEEEECCC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-CchhhhccccCCEEEEccc
Confidence            689999755559999988655 456744 34443 233333 367999997764

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=85.09  E-value=0.32  Score=40.33  Aligned_cols=33  Identities=18%  Similarity=0.369  Sum_probs=28.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHH-----hCCCEEEEEeCCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQ-----RHHATVSIVHALT  170 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~-----~~ga~Vti~~~~t  170 (269)
                      -.|+|||+|-+ |..+|.+|+     +.|.+|+|+.+..
T Consensus         8 yDV~IvGaG~a-Gl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           8 CDVLIVGAGPA-GLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CCEEEECcCHH-HHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            46999999887 999999996     5789999998753

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.85  E-value=0.28  Score=38.14  Aligned_cols=30  Identities=13%  Similarity=0.255  Sum_probs=27.7

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      .++|||+|-+ |..+|..+++.|.+|.++.+
T Consensus         5 DviIIGgGpA-Gl~aA~~aar~G~~V~viE~   34 (229)
T d3lada1           5 DVIVIGAGPG-GYVAAIKSAQLGLKTALIEK   34 (229)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHHTCCEEEEEC
T ss_pred             CEEEECcCHH-HHHHHHHHHHCCCeEEEEec
Confidence            5899999998 99999999999999999964

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.58  E-value=0.78  Score=38.36  Aligned_cols=46  Identities=15%  Similarity=0.142  Sum_probs=33.5

Q ss_pred             HHHHHHHHHhCCCCccceEEEEcCCcccHHHHHHHHHhCCC-EEEEEeCC
Q 024306          121 KGCIELLIRSGVEIMGKNAVVIGRSNIVGLPTSLLLQRHHA-TVSIVHAL  169 (269)
Q Consensus       121 ~g~~~~l~~~~~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~~~  169 (269)
                      .+..+.+++....++||+|+-||.|.  | .++.++++.|| .|+.+...
T Consensus        21 ~~y~~ai~~~~~~~~~~~VLDiGcG~--G-~lsl~aa~~Ga~~V~aid~s   67 (311)
T d2fyta1          21 ESYRDFIYQNPHIFKDKVVLDVGCGT--G-ILSMFAAKAGAKKVLGVDQS   67 (311)
T ss_dssp             HHHHHHHHHCGGGTTTCEEEEETCTT--S-HHHHHHHHTTCSEEEEEESS
T ss_pred             HHHHHHHHhccccCCcCEEEEECCCC--C-HHHHHHHHcCCCEEEEEeCH
Confidence            44555666555557999999999974  6 46777888897 68888544

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.41  E-value=0.28  Score=41.05  Aligned_cols=35  Identities=14%  Similarity=0.425  Sum_probs=30.0

Q ss_pred             CccceEEEEcCCcccHHHHHHHHHhC--CCEEEEEeCC
Q 024306          134 IMGKNAVVIGRSNIVGLPTSLLLQRH--HATVSIVHAL  169 (269)
Q Consensus       134 l~gk~v~ViG~gg~vg~~~a~~L~~~--ga~Vti~~~~  169 (269)
                      ..+++|+|||+|-+ |..+|..|+++  |.+|+++.+.
T Consensus        48 ~~~~~~~~~g~g~~-g~~~a~~~~~~~~~~~~~~~~~~   84 (311)
T d2gjca1          48 FAVSDVIIVGAGSS-GLSAAYVIAKNRPDLKVCIIESS   84 (311)
T ss_dssp             TTEESEEEECCSHH-HHHHHHHHHHHCTTSCEEEECSS
T ss_pred             ccCCCEEEECCCHH-HHHHHHHHHHhCCCCeEEEEEcC
Confidence            35788999999998 99999999864  7899999664

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=84.33  E-value=0.2  Score=42.40  Aligned_cols=37  Identities=22%  Similarity=0.404  Sum_probs=31.7

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      ++.+.-.|+|||+|.+ |..+|..++++|++|+++.+.
T Consensus         3 ~~~~~~DVlVVG~G~A-Gl~AAl~aa~~G~~V~lleK~   39 (330)
T d1neka2           3 LPVREFDAVVIGAGGA-GMRAALQISQSGQTCALLSKV   39 (330)
T ss_dssp             CCEEEESCEEECCSHH-HHHHHHHHHHTTCCCEEECSS
T ss_pred             CCcccCCEEEECcCHH-HHHHHHHHHHcCCeEEEEeCC
Confidence            3455667999999999 999999999999999999654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.31  E-value=0.37  Score=37.61  Aligned_cols=30  Identities=23%  Similarity=0.310  Sum_probs=27.4

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      .++|||+|-+ |..+|..+++.|.+|.++.+
T Consensus         5 DviIIG~Gpa-G~~aA~~aar~G~kV~vIEk   34 (221)
T d3grsa1           5 DYLVIGGGSG-GLASARRAAELGARAAVVES   34 (221)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHTTCCEEEEES
T ss_pred             CEEEECCCHH-HHHHHHHHHHCCCEEEEEec
Confidence            5899999998 99999999999999999854

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=84.07  E-value=0.39  Score=40.64  Aligned_cols=30  Identities=23%  Similarity=0.205  Sum_probs=27.8

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      .|+|||+|-+ |-.+|..|++.|.+|.++.+
T Consensus         4 ~VIVVGsG~a-G~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGTGYG-AAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCCEEEEES
T ss_pred             eEEEeCcCHH-HHHHHHHHHHCcCeEEEEec
Confidence            5899999998 99999999999999999975

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=83.87  E-value=0.45  Score=39.77  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=28.2

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      -.++|||+|-+ |-.+|..|++.|.+|.|+.+
T Consensus         5 yDviIVGsG~a-G~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           5 YDVVIVGSGPI-GCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEEEECCSHH-HHHHHHHHHHTTCEEEEECS
T ss_pred             ccEEEECcCHH-HHHHHHHHhhCCCeEEEEec
Confidence            36999999998 99999999999999999964

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=83.64  E-value=0.41  Score=38.84  Aligned_cols=31  Identities=29%  Similarity=0.458  Sum_probs=28.1

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHAL  169 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~  169 (269)
                      .++|||+|-+ |..+|..+++.|++|.++.+.
T Consensus         3 DviVIG~G~a-G~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           3 DLIVIGGGSG-GMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             SEEEECCSHH-HHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCCHH-HHHHHHHHHHCCCeEEEEecC
Confidence            4899999998 999999999999999999653

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=83.61  E-value=0.48  Score=38.44  Aligned_cols=33  Identities=24%  Similarity=0.191  Sum_probs=29.0

Q ss_pred             ccceEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          135 MGKNAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       135 ~gk~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      +...++|||+|-+ |..+|..++++|.+|+++.+
T Consensus        41 k~yDvvVIGgG~a-G~~aA~~~a~~G~kv~vve~   73 (261)
T d1mo9a1          41 REYDAIFIGGGAA-GRFGSAYLRAMGGRQLIVDR   73 (261)
T ss_dssp             SCBSEEEECCSHH-HHHHHHHHHHTTCCEEEEES
T ss_pred             ccCCEEEECCCHH-HHHHHHHHHHCCCeEEEEec
Confidence            4557999999987 99999999999999998864

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=83.60  E-value=0.4  Score=34.88  Aligned_cols=50  Identities=18%  Similarity=0.118  Sum_probs=34.0

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEEEeCCCC--------------------C-H-hhhcCCCCEEEeccCC
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSIVHALTK--------------------N-P-EQITSEADIVIAAAGV  189 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~~t~--------------------~-l-~~~~~~aDiVIsAtg~  189 (269)
                      |+++|+|.|.. |+.++..|...  .|.++.....                    + | ...+.+|+.+|.+++.
T Consensus         1 kHivI~G~g~~-g~~l~~~L~~~--~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~   72 (129)
T d2fy8a1           1 RHVVICGWSES-TLECLRELRGS--EVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLES   72 (129)
T ss_dssp             CCEEEESCCHH-HHHHHHTSCGG--GEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSS
T ss_pred             CEEEEECCCHH-HHHHHHHHcCC--CCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccc
Confidence            68999999886 99999998544  4555543321                    1 1 1346778888877764

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=83.43  E-value=0.45  Score=38.49  Aligned_cols=29  Identities=17%  Similarity=0.297  Sum_probs=26.3

Q ss_pred             EEEEcCCcccHHHHHHHHHhCCC-EEEEEe
Q 024306          139 AVVIGRSNIVGLPTSLLLQRHHA-TVSIVH  167 (269)
Q Consensus       139 v~ViG~gg~vg~~~a~~L~~~ga-~Vti~~  167 (269)
                      |+|.|++|.+|+.++..|.++|. .|++++
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            78999999999999999999996 688875

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=83.19  E-value=0.46  Score=36.73  Aligned_cols=31  Identities=23%  Similarity=0.224  Sum_probs=26.3

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCC--CEEEEEeCC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHH--ATVSIVHAL  169 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~g--a~Vti~~~~  169 (269)
                      ||+|||+|-+ |.-+|..|.+.+  .+|+++++.
T Consensus         2 KVvIIGgG~~-G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           2 KVIVLGSSHG-GYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             EEEEECSSHH-HHHHHHHHHHHCTTSEEEEEESS
T ss_pred             EEEEECCcHH-HHHHHHHHHhcCCCCeEEEEeCC
Confidence            6999999987 999999998875  479998753

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=82.75  E-value=1.7  Score=31.79  Aligned_cols=37  Identities=16%  Similarity=0.149  Sum_probs=30.1

Q ss_pred             ccceEEEEcCCccc----------HHHHHHHHHhCCCEEEEEeCCCC
Q 024306          135 MGKNAVVIGRSNIV----------GLPTSLLLQRHHATVSIVHALTK  171 (269)
Q Consensus       135 ~gk~v~ViG~gg~v----------g~~~a~~L~~~ga~Vti~~~~t~  171 (269)
                      ..|+|+|||+|...          +.-+++.|.+.|.++.++|.+..
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            45889999998642          67788899999999999987743

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.16  E-value=0.3  Score=36.70  Aligned_cols=31  Identities=23%  Similarity=0.442  Sum_probs=26.5

Q ss_pred             CCCccceEEEEcCCcccHHHHHHHHHhCCCEE
Q 024306          132 VEIMGKNAVVIGRSNIVGLPTSLLLQRHHATV  163 (269)
Q Consensus       132 ~~l~gk~v~ViG~gg~vg~~~a~~L~~~ga~V  163 (269)
                      ....||+|+|||+|.+ |.-+|..+.++|+.+
T Consensus        25 ~~~~gkrVvVIGgG~~-g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          25 KAPVGNKVAIIGCGGI-GFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCCCCSEEEEECCHHH-HHHHHHHHTCCSSCG
T ss_pred             ccccCCceEEEcCchh-HHHHHHHHHHcCCcc
Confidence            3456999999999776 999999999999853

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=82.03  E-value=0.49  Score=40.03  Aligned_cols=30  Identities=30%  Similarity=0.319  Sum_probs=27.5

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      .|+|||+|-+ |-.+|..|++.|.+|+++.+
T Consensus         9 dvIVVGsG~a-G~v~A~rLaeaG~~VlvLEa   38 (370)
T d3coxa1           9 PALVIGSGYG-GAVAALRLTQAGIPTQIVEM   38 (370)
T ss_dssp             EEEEECCSHH-HHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEECcCHH-HHHHHHHHHHCCCeEEEEeC
Confidence            5899999988 99999999999999999975

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.52  E-value=0.5  Score=41.06  Aligned_cols=33  Identities=21%  Similarity=0.402  Sum_probs=29.2

Q ss_pred             cceEEEEcCCcccHHHHHHHHHh------CCCEEEEEeCC
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQR------HHATVSIVHAL  169 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~------~ga~Vti~~~~  169 (269)
                      .-.|+|||+|-+ |..+|..|++      +|.+|.++.+.
T Consensus        32 e~DViIVGgGPA-GlsaA~~LA~l~~~~~~Gl~VlllEK~   70 (380)
T d2gmha1          32 EADVVIVGAGPA-GLSAATRLKQLAAQHEKDLRVCLVEKA   70 (380)
T ss_dssp             ECSEEEECCSHH-HHHHHHHHHHHHHHTTCCCCEEEECSS
T ss_pred             cCCEEEECCCHH-HHHHHHHHHhhhhhhcCCCEEEEEcCC
Confidence            457999999998 9999999987      89999999765

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=81.45  E-value=0.77  Score=39.08  Aligned_cols=32  Identities=25%  Similarity=0.282  Sum_probs=27.8

Q ss_pred             cceEEEEcCCcccHHHHHHHHHh-CCCEEEEEe
Q 024306          136 GKNAVVIGRSNIVGLPTSLLLQR-HHATVSIVH  167 (269)
Q Consensus       136 gk~v~ViG~gg~vg~~~a~~L~~-~ga~Vti~~  167 (269)
                      +-+|+|.|++|.+|..++..|.+ .|.+|++++
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D   34 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVD   34 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEe
Confidence            46899999999999999998864 688999875

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=81.17  E-value=0.26  Score=37.72  Aligned_cols=28  Identities=18%  Similarity=0.093  Sum_probs=23.3

Q ss_pred             ceEEEEcCCcccHHHHHHHHHhCCCEEEE
Q 024306          137 KNAVVIGRSNIVGLPTSLLLQRHHATVSI  165 (269)
Q Consensus       137 k~v~ViG~gg~vg~~~a~~L~~~ga~Vti  165 (269)
                      ++|+|||+|-+ |--+|..|.+.|.++++
T Consensus         4 a~VvIIGgG~~-G~e~A~~l~~~g~~v~i   31 (183)
T d1d7ya1           4 APVVVLGAGLA-SVSFVAELRQAGYQGLI   31 (183)
T ss_dssp             SSEEEECCSHH-HHHHHHHHHHHTCCSCE
T ss_pred             CCEEEECccHH-HHHHHHHHHhcCCceEE
Confidence            46999999887 99999999998875443

>d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Flavodoxin-related
domain: ROO-like flavoprotein TM0755, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.13  E-value=7.8  Score=27.95  Aligned_cols=115  Identities=13%  Similarity=0.139  Sum_probs=70.8

Q ss_pred             CCeEEEEEeCCCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCCCCCCHHHHHh
Q 024306            8 VPGLAVILVGERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLPQHLDEGKILD   87 (269)
Q Consensus         8 ~p~L~~i~vg~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~~~~~~~~i~~   87 (269)
                      +.|..||-....-.....++...+.+++.|+++..+.+... +..++......+.   +.+++.+--|-           
T Consensus         3 ~~kv~IiY~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~~l~---~~d~iiigspt-----------   67 (148)
T d1vmea1           3 KGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDE-ERPAISEILKDIP---DSEALIFGVST-----------   67 (148)
T ss_dssp             TTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSS-CCCCHHHHHHHST---TCSEEEEEECE-----------
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHHhCCCeEEEEecccc-cccchhHhhhhHH---HCCEeEEEecc-----------
Confidence            46778887777777788899999999999999988877542 2223333333332   23444444431           


Q ss_pred             cCCccccccccccceecccccCCCCCccccCCHHHHHHHHHHhCCCCccceEEEEcCC----cccHHHHHHHHHhCCCEE
Q 024306           88 AVSLEKDVDGFHPLNIGNLAMRGREPLFIPCTPKGCIELLIRSGVEIMGKNAVVIGRS----NIVGLPTSLLLQRHHATV  163 (269)
Q Consensus        88 ~i~p~kdvdg~~~~n~g~l~~g~~~~~~~p~t~~g~~~~l~~~~~~l~gk~v~ViG~g----g~vg~~~a~~L~~~ga~V  163 (269)
                                    ..|.+          |.....++..+..  ..++||.++++|..    ++ ++.+...|...|+++
T Consensus        68 --------------~~~~~----------~~~~~~~l~~~~~--~~~~~k~~~~fgs~g~~~~a-~~~~~~~l~~~G~~~  120 (148)
T d1vmea1          68 --------------YEAEI----------HPLMRFTLLEIID--KANYEKPVLVFGVHGWAPSA-ERTAGELLKETKFRI  120 (148)
T ss_dssp             --------------ETTEE----------CHHHHHHHHHHHH--HCCCCCEEEEEEECCCCCCC--CCHHHHHHTSSCEE
T ss_pred             --------------cCCcc----------CchHHHHHHHHhh--cccCCCEEEEEEcCCCccch-HHHHHHHHHHcCCcE
Confidence                          11111          1122344444433  35689999999864    34 678888888889874


Q ss_pred             E
Q 024306          164 S  164 (269)
Q Consensus       164 t  164 (269)
                      .
T Consensus       121 v  121 (148)
T d1vmea1         121 L  121 (148)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.97  E-value=0.88  Score=31.67  Aligned_cols=30  Identities=7%  Similarity=0.103  Sum_probs=26.3

Q ss_pred             eEEEEcCCcccHHHHHHHHHhCCCEEEEEeC
Q 024306          138 NAVVIGRSNIVGLPTSLLLQRHHATVSIVHA  168 (269)
Q Consensus       138 ~v~ViG~gg~vg~~~a~~L~~~ga~Vti~~~  168 (269)
                      ||+|||.||- ..+++..|.+...+++++.-
T Consensus         2 kVLviGsGgR-EHAia~~l~~s~~~v~~~pG   31 (90)
T d1vkza2           2 RVHILGSGGR-EHAIGWAFAKQGYEVHFYPG   31 (90)
T ss_dssp             EEEEEECSHH-HHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCHH-HHHHHHHHhcCCCeEEEecC
Confidence            7999999997 99999999988888888743

>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Purine repressor (PurR), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.87  E-value=5.2  Score=31.32  Aligned_cols=57  Identities=19%  Similarity=0.134  Sum_probs=42.2

Q ss_pred             CCcchHHHHHHHHHHHHHcCCeEEEEEcCCCCCHHHHHHHHHhhhcCCCcCEEEEeCCCC
Q 024306           18 ERRDSQTYVRNKIKACEEVGIKSIVTEFADGCTEDEVLNALSNYNQDSSINGILVQLPLP   77 (269)
Q Consensus        18 ~~~~s~~y~~~~~~~~~~~Gi~~~~~~~~~~~~~~~l~~~i~~ln~d~~v~Gi~V~~Pl~   77 (269)
                      ++|-...+.+...+.|++.|.++......  -+.++..+.++.|.. .+++|+++.-+-.
T Consensus        11 ~~pf~~~~~~gi~~~~~~~gy~~~~~~~~--~d~~~~~~~~~~l~~-~~vdgiIi~~~~~   67 (282)
T d1dbqa_          11 EAAYFAEIIEAVEKNCFQKGYTLILGNAW--NNLEKQRAYLSMMAQ-KRVDGLLVMCSEY   67 (282)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTCEEEEEECT--TCHHHHHHHHHHHHH-TTCSEEEEECSCC
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEEEeCC--CCHHHHHHHHHHHHh-cCCCEEeeecccc
Confidence            44544566788888999999988766543  357777888898988 5899999865533

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=80.83  E-value=1.6  Score=32.14  Aligned_cols=38  Identities=21%  Similarity=0.205  Sum_probs=30.6

Q ss_pred             ccceEEEEcCCccc----------HHHHHHHHHhCCCEEEEEeCCCCC
Q 024306          135 MGKNAVVIGRSNIV----------GLPTSLLLQRHHATVSIVHALTKN  172 (269)
Q Consensus       135 ~gk~v~ViG~gg~v----------g~~~a~~L~~~ga~Vti~~~~t~~  172 (269)
                      +-|+|+|||+|...          +.-+++.|.+.|.++.++|.+...
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            45899999998642          677888899999999999877543