Citrus Sinensis ID: 024311
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 269 | 2.2.26 [Sep-21-2011] | |||||||
| Q2KIJ2 | 373 | Histidine protein methylt | yes | no | 0.427 | 0.308 | 0.360 | 1e-12 | |
| Q55DL2 | 309 | Histidine protein methylt | yes | no | 0.286 | 0.249 | 0.451 | 9e-12 | |
| O95568 | 372 | Histidine protein methylt | yes | no | 0.427 | 0.309 | 0.330 | 1e-10 | |
| Q9CZ09 | 362 | Histidine protein methylt | yes | no | 0.427 | 0.317 | 0.303 | 2e-09 | |
| Q4KM84 | 362 | Histidine protein methylt | yes | no | 0.379 | 0.281 | 0.341 | 2e-09 | |
| Q9UTQ8 | 339 | Histidine protein methylt | yes | no | 0.602 | 0.477 | 0.234 | 0.0002 |
| >sp|Q2KIJ2|MET18_BOVIN Histidine protein methyltransferase 1 homolog OS=Bos taurus GN=METTL18 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 7/122 (5%)
Query: 1 MISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGT 60
+IS +G LK WE + DL+ L ++ F GK+VL+L CG GL GI A GA
Sbjct: 157 LISGVYEGGLKIWECTFDLLAYL----TKAKVKFAGKKVLDLGCGSGLLGIMALKGGAKE 212
Query: 61 VHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSV---HFYAGDWE 117
+HFQD ++ I T+PNV+AN E R T+A + F++G+W
Sbjct: 213 IHFQDYNSVVIDEVTLPNVVANSTLEDEENDVNEPDVKRLRRSTVAQELCKCRFFSGEWS 272
Query: 118 EL 119
E
Sbjct: 273 EF 274
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Probable histidine methyltransferase. Bos taurus (taxid: 9913) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q55DL2|MET18_DICDI Histidine protein methyltransferase 1 homolog OS=Dictyostelium discoideum GN=DDB_G0270580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 1 MISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGT 60
+I +G K WE SID++N L E ++ GK+VLE+ CG+GLPGI+ CL
Sbjct: 121 LIPGVYEGGFKLWECSIDIINYLFEE----KIDLSGKKVLEIGCGHGLPGIY-CLLNGSI 175
Query: 61 VHFQDLSAETIRCTTVPNVLAN 82
V FQD + E I T PNVL N
Sbjct: 176 VTFQDYNEEVIYNLTQPNVLIN 197
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Probable histidine methyltransferase. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O95568|MET18_HUMAN Histidine protein methyltransferase 1 homolog OS=Homo sapiens GN=METTL18 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 1 MISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGT 60
+I+ +G LK WE + DL+ ++ F GK+VL+L CG GL GI A G+
Sbjct: 157 LITGVYEGGLKIWECTFDLLAYF----TKAKVKFAGKKVLDLGCGSGLLGITAFKGGSKE 212
Query: 61 VHFQDLSAETIRCTTVPNVLAN--LEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEE 118
+HFQD ++ I T+PNV+AN LE + + T F++G+W E
Sbjct: 213 IHFQDYNSMVIDEVTLPNVVANSTLEDEENDVNEPDVKRCRKPKVTQLYKCRFFSGEWSE 272
Query: 119 L 119
Sbjct: 273 F 273
|
Probable histidine methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9CZ09|MET18_MOUSE Histidine protein methyltransferase 1 homolog OS=Mus musculus GN=Mettl18 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 1 MISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGT 60
+I +G LK WE + DL+ ++ F G++VL+L CG GL GI A GA
Sbjct: 147 LIPGVYEGGLKIWECTFDLLTYFT----KAKVKFAGQKVLDLGCGSGLLGITASKGGARE 202
Query: 61 VHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSV---HFYAGDWE 117
VHFQD + I T+PNV+AN+ + + + + + ++G+W
Sbjct: 203 VHFQDYNGLVIDEVTLPNVVANVPLQDDSNGKNEPDGKRQRKSEVGREICKCRLFSGEWA 262
Query: 118 EL 119
E
Sbjct: 263 EF 264
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Probable histidine methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q4KM84|MET18_RAT Histidine protein methyltransferase 1 homolog OS=Rattus norvegicus GN=Mettl18 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 21/123 (17%)
Query: 7 DGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL 66
+G LK WE + DL+ ++ F G++VL+L CG GL GI A GA VHFQD
Sbjct: 153 EGGLKIWECTFDLMTYFTK----AKVKFAGQKVLDLGCGSGLLGITASKGGAREVHFQDY 208
Query: 67 SAETIRCTTVPNVLANL----------EQARERQSRQPESSLTPSRQTLAPSVHFYAGDW 116
+ I T+PNV+AN+ E A +RQ R+ E + + ++G+W
Sbjct: 209 NGLVIDEVTLPNVVANVPLQGDSNGINEPAGKRQ-RKSEVAQETCK------CRLFSGEW 261
Query: 117 EEL 119
E
Sbjct: 262 AEF 264
|
Probable histidine methyltransferase. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9UTQ8|HPM1_SCHPO Histidine protein methyltransferase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1071.05 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 60/222 (27%)
Query: 1 MISSKPDGFLKCWESSIDLVNVLKH-EIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-- 57
++ + +G K WE S+DL N +K ++ L+ VLEL CG +P I +C +
Sbjct: 94 LVPNVYEGGYKTWECSLDLANEIKKIDVVKNNLT----TVLELGCGSAIP-ILSCFQEFY 148
Query: 58 ----AGTVHFQDLSAETIRCTTVPNVLANLE-QARERQSRQPESSLTPSRQTLAPSVHFY 112
T+ FQD + + +R T+PN+L N +E S + ++ S
Sbjct: 149 KHRIPCTLVFQDFNVDVLRYVTLPNLLLNWYFCTQEHDSSEKHGTIDVS----------- 197
Query: 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG 172
P++L +D++ +F+ GC S++ ++ Q
Sbjct: 198 -------PSLLQEFSDDLARTNIYC-------EFLCGCWSEEMQLLIQ------------ 231
Query: 173 SRAWERASEADQGEGGYDVILLTEIPYSVTSLKK-LYLLIKK 213
R + G+ + ++L +E YS+ SL+ LY+L+K
Sbjct: 232 -RTY--------GDHYFSLVLASETIYSLPSLENFLYMLLKN 264
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Required for histidine methylation of RPL3 at 'His-243'. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 269 | ||||||
| 255587050 | 350 | conserved hypothetical protein [Ricinus | 1.0 | 0.768 | 0.873 | 1e-139 | |
| 224132700 | 350 | predicted protein [Populus trichocarpa] | 1.0 | 0.768 | 0.862 | 1e-137 | |
| 225433854 | 350 | PREDICTED: histidine protein methyltrans | 1.0 | 0.768 | 0.855 | 1e-135 | |
| 224095700 | 351 | predicted protein [Populus trichocarpa] | 0.996 | 0.763 | 0.866 | 1e-134 | |
| 147805782 | 328 | hypothetical protein VITISV_017347 [Viti | 0.973 | 0.798 | 0.854 | 1e-131 | |
| 449468792 | 350 | PREDICTED: histidine protein methyltrans | 0.992 | 0.762 | 0.868 | 1e-129 | |
| 363807740 | 330 | uncharacterized protein LOC100786056 [Gl | 0.936 | 0.763 | 0.841 | 1e-122 | |
| 356550366 | 346 | PREDICTED: uncharacterized protein LOC10 | 0.996 | 0.774 | 0.832 | 1e-122 | |
| 297828027 | 361 | hypothetical protein ARALYDRAFT_483439 [ | 0.985 | 0.734 | 0.809 | 1e-121 | |
| 18406207 | 351 | S-adenosyl-L-methionine-dependent methyl | 0.985 | 0.754 | 0.794 | 1e-120 |
| >gi|255587050|ref|XP_002534114.1| conserved hypothetical protein [Ricinus communis] gi|223525826|gb|EEF28265.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/269 (87%), Positives = 252/269 (93%)
Query: 1 MISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGT 60
MISSKPDG LK W+SSIDLVNVLKHEIRDGQLSFRGKRVLEL C YGLPGIFACLKGA T
Sbjct: 82 MISSKPDGSLKSWDSSIDLVNVLKHEIRDGQLSFRGKRVLELGCSYGLPGIFACLKGACT 141
Query: 61 VHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELP 120
VHFQD+SAE IRCTT+PNVLANLEQAR+RQSRQPES LTPSR TL+PSVHFYAGDWEELP
Sbjct: 142 VHFQDMSAEMIRCTTIPNVLANLEQARDRQSRQPESPLTPSRHTLSPSVHFYAGDWEELP 201
Query: 121 TVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERAS 180
TVLS+VRND E T GMSLSFSEEDFMDGCSSQDGSI+GQ++SSRRSRKLSGSRAWERA+
Sbjct: 202 TVLSIVRNDALEATPGMSLSFSEEDFMDGCSSQDGSIVGQETSSRRSRKLSGSRAWERAN 261
Query: 181 EADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHL 240
E D GEGGYDVIL+T+IPYSVTSLKKLY LIKKCLRPPYGV+YLATK+NYVGFNN ARHL
Sbjct: 262 ETDHGEGGYDVILMTDIPYSVTSLKKLYALIKKCLRPPYGVLYLATKRNYVGFNNGARHL 321
Query: 241 RSLVDEEGIFGAHLIKEMTDRDIWKFFLK 269
+SLVDEEGIFGAHL+KEM +RDIWKFFLK
Sbjct: 322 KSLVDEEGIFGAHLVKEMAERDIWKFFLK 350
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224132700|ref|XP_002327859.1| predicted protein [Populus trichocarpa] gi|222837268|gb|EEE75647.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 232/269 (86%), Positives = 253/269 (94%)
Query: 1 MISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGT 60
MISSK DG+LK W+SSIDLVNVLKHEIRDGQLSFRGKRVLEL C YG+PGIFACLKGA T
Sbjct: 82 MISSKTDGYLKSWDSSIDLVNVLKHEIRDGQLSFRGKRVLELGCSYGIPGIFACLKGAST 141
Query: 61 VHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELP 120
VHFQD +AETIRCTT+PNVLANLEQAR+RQSRQPES LTPSRQ LAPSVHFYAG+WEELP
Sbjct: 142 VHFQDQNAETIRCTTIPNVLANLEQARDRQSRQPESPLTPSRQMLAPSVHFYAGEWEELP 201
Query: 121 TVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERAS 180
TVLSVVR+D EVTTGMSLSFSEEDFMDGCSSQDGSIIGQ++SSRRSRKLSGSRAWERAS
Sbjct: 202 TVLSVVRSDTFEVTTGMSLSFSEEDFMDGCSSQDGSIIGQETSSRRSRKLSGSRAWERAS 261
Query: 181 EADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHL 240
E GEGGYDVIL+T+IP+SV+SLKKLY LIKKCLRPPYGV+YLATK+NYVGF+N AR L
Sbjct: 262 ETGHGEGGYDVILMTDIPHSVSSLKKLYALIKKCLRPPYGVLYLATKRNYVGFSNGARQL 321
Query: 241 RSLVDEEGIFGAHLIKEMTDRDIWKFFLK 269
RSLVDEEG+FGAHL+KEMTDRD+WKFF+K
Sbjct: 322 RSLVDEEGVFGAHLVKEMTDRDVWKFFIK 350
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433854|ref|XP_002264228.1| PREDICTED: histidine protein methyltransferase 1 homolog [Vitis vinifera] gi|297743766|emb|CBI36649.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 230/269 (85%), Positives = 247/269 (91%)
Query: 1 MISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGT 60
MISSKP+G LK W+SSIDLVNVLKHEIRDGQLSFRGKRVLEL C YGLPGIFACLKGA T
Sbjct: 82 MISSKPEGSLKSWDSSIDLVNVLKHEIRDGQLSFRGKRVLELGCTYGLPGIFACLKGAST 141
Query: 61 VHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELP 120
VHFQDL+AE IRCTT+PNVLANLEQAR++QSRQPES LTPSRQTLAP VHFYAGDWEELP
Sbjct: 142 VHFQDLNAEAIRCTTIPNVLANLEQARDKQSRQPESPLTPSRQTLAPVVHFYAGDWEELP 201
Query: 121 TVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERAS 180
TVLS+VR + SEV TGM+LSFSEEDFMDGCSS DGS+ G + SSRRSRKLSGSRAWERAS
Sbjct: 202 TVLSIVRTEGSEVPTGMNLSFSEEDFMDGCSSHDGSLTGHEFSSRRSRKLSGSRAWERAS 261
Query: 181 EADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHL 240
E D GEGGYDVIL+TEIPYSVTSLKKLY LIKKCLRPPYGV+YLATKKNYVGFNN AR L
Sbjct: 262 EMDSGEGGYDVILMTEIPYSVTSLKKLYALIKKCLRPPYGVIYLATKKNYVGFNNGARVL 321
Query: 241 RSLVDEEGIFGAHLIKEMTDRDIWKFFLK 269
R+LVDEEG FG HL+KEM+DRD+WKFFLK
Sbjct: 322 RNLVDEEGFFGVHLVKEMSDRDVWKFFLK 350
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224095700|ref|XP_002310441.1| predicted protein [Populus trichocarpa] gi|222853344|gb|EEE90891.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/269 (86%), Positives = 252/269 (93%), Gaps = 1/269 (0%)
Query: 2 ISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTV 61
ISSK DG+LK W+SSIDLVNVLKHEIRDGQLSFRGKRVLEL C YG+PGIF+CLKGA TV
Sbjct: 83 ISSKTDGYLKSWDSSIDLVNVLKHEIRDGQLSFRGKRVLELGCSYGIPGIFSCLKGASTV 142
Query: 62 HFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPT 121
HFQDL+AETIRCTT+PNVLANLEQAR+RQSRQPES LTPSRQTLAPSVHFYAG+WEELPT
Sbjct: 143 HFQDLNAETIRCTTIPNVLANLEQARDRQSRQPESPLTPSRQTLAPSVHFYAGEWEELPT 202
Query: 122 VLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDS-SSRRSRKLSGSRAWERAS 180
VLSVVRND EVTTGMSLSFSEEDFMDGCSS DGSIIGQ++ S RRSRKLSGS+AWERAS
Sbjct: 203 VLSVVRNDTFEVTTGMSLSFSEEDFMDGCSSLDGSIIGQETSSRRRSRKLSGSQAWERAS 262
Query: 181 EADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHL 240
E D GEGGYDVIL+T+IPYS++SLKKLY LIKKCLRPPYGV+YLATK+NYVGFNN AR L
Sbjct: 263 ETDHGEGGYDVILMTDIPYSISSLKKLYALIKKCLRPPYGVLYLATKRNYVGFNNGARQL 322
Query: 241 RSLVDEEGIFGAHLIKEMTDRDIWKFFLK 269
RSLVDEEGIFGAHL+KEMTDRD+WKFF K
Sbjct: 323 RSLVDEEGIFGAHLVKEMTDRDVWKFFFK 351
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147805782|emb|CAN69477.1| hypothetical protein VITISV_017347 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 224/262 (85%), Positives = 240/262 (91%)
Query: 8 GFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLS 67
G LK W+SSIDLVNVLKHEIRDGQLSFRGKRVLEL C YGLPGIFACLKGA TVHFQDL+
Sbjct: 67 GSLKSWDSSIDLVNVLKHEIRDGQLSFRGKRVLELGCTYGLPGIFACLKGASTVHFQDLN 126
Query: 68 AETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVR 127
AE IRCTT+PNVLANLEQAR++QSRQPES LTPSRQTLAP VHFYAGDWEELPTVLS+VR
Sbjct: 127 AEAIRCTTIPNVLANLEQARDKQSRQPESPLTPSRQTLAPVVHFYAGDWEELPTVLSIVR 186
Query: 128 NDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEG 187
+ SEV TGM+LSFSEEDFMDGCSS DGS+ G + SSRRSRKLSGSRAWERASE D GEG
Sbjct: 187 TEGSEVPTGMNLSFSEEDFMDGCSSHDGSLTGHEFSSRRSRKLSGSRAWERASEMDSGEG 246
Query: 188 GYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEE 247
GYDVIL+TEIPYSVTSLKKLY LIKKCLRPPYGV+YLATKKNYVGFNN AR LR+LVDEE
Sbjct: 247 GYDVILMTEIPYSVTSLKKLYALIKKCLRPPYGVIYLATKKNYVGFNNGARVLRNLVDEE 306
Query: 248 GIFGAHLIKEMTDRDIWKFFLK 269
G FG HL+KEM+DRD+WKFFLK
Sbjct: 307 GFFGVHLVKEMSDRDVWKFFLK 328
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449468792|ref|XP_004152105.1| PREDICTED: histidine protein methyltransferase 1 homolog [Cucumis sativus] gi|449484635|ref|XP_004156936.1| PREDICTED: histidine protein methyltransferase 1 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 232/267 (86%), Positives = 249/267 (93%)
Query: 3 SSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVH 62
SSKP+G LK W+SSIDLVNVLKHEIRDGQLSFRGKRVLEL C YGLPG+FACLKGA VH
Sbjct: 84 SSKPEGHLKSWDSSIDLVNVLKHEIRDGQLSFRGKRVLELGCSYGLPGVFACLKGASIVH 143
Query: 63 FQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTV 122
FQDLSAET+RCTT+PNVLANLEQAR+RQSRQPES LTPSR TLAPSVHFYAGDWEELPTV
Sbjct: 144 FQDLSAETVRCTTIPNVLANLEQARDRQSRQPESPLTPSRHTLAPSVHFYAGDWEELPTV 203
Query: 123 LSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEA 182
LSVVR D E TGMSLSFSEEDFMDGCSSQDGSIIG +SSSRRSRKLSGSRAWERASEA
Sbjct: 204 LSVVRGDGFEAPTGMSLSFSEEDFMDGCSSQDGSIIGHESSSRRSRKLSGSRAWERASEA 263
Query: 183 DQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRS 242
DQGEGGYDVIL+ EIP+S+ SLKKLY LIKKC+RPPYGV+YLATKKNYVGFN+ ARHLR+
Sbjct: 264 DQGEGGYDVILMAEIPFSLNSLKKLYALIKKCVRPPYGVLYLATKKNYVGFNSGARHLRN 323
Query: 243 LVDEEGIFGAHLIKEMTDRDIWKFFLK 269
LVDEEG+FGAHL+KEMTDRD+WKFFLK
Sbjct: 324 LVDEEGVFGAHLVKEMTDRDVWKFFLK 350
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363807740|ref|NP_001242428.1| uncharacterized protein LOC100786056 [Glycine max] gi|255636338|gb|ACU18508.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/253 (84%), Positives = 232/253 (91%), Gaps = 1/253 (0%)
Query: 2 ISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTV 61
IS KPDG+LK W SSIDLV+VLKHEIRDGQL+FRGKRVLELSC YGLPGIFACLKGA V
Sbjct: 78 ISLKPDGYLKSWTSSIDLVSVLKHEIRDGQLTFRGKRVLELSCNYGLPGIFACLKGASVV 137
Query: 62 HFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPT 121
HFQD SAET+RCTT+PNVLANL+QAR+RQSRQPES LTPSRQTLAPSV+FYAGDWEELP+
Sbjct: 138 HFQDQSAETVRCTTIPNVLANLKQARDRQSRQPESPLTPSRQTLAPSVNFYAGDWEELPS 197
Query: 122 VLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASE 181
VLS+ ++D EV GMSLSFSEEDFMDGCSSQDGSIIG +S SRRSRKLSGSRAWER SE
Sbjct: 198 VLSIAKSDGYEVMPGMSLSFSEEDFMDGCSSQDGSIIGHESHSRRSRKLSGSRAWERGSE 257
Query: 182 ADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA-TKKNYVGFNNAARHL 240
ADQGEGGYD+IL+TEIPYSVTSLKKLY LIKKCLRPPYGVV+LA TK++YVGF+N R L
Sbjct: 258 ADQGEGGYDIILMTEIPYSVTSLKKLYALIKKCLRPPYGVVHLAPTKRHYVGFSNGVRQL 317
Query: 241 RSLVDEEGIFGAH 253
RSLVDEEGIFGAH
Sbjct: 318 RSLVDEEGIFGAH 330
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550366|ref|XP_003543558.1| PREDICTED: uncharacterized protein LOC100810964 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 224/269 (83%), Positives = 244/269 (90%), Gaps = 1/269 (0%)
Query: 2 ISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTV 61
IS KPDG+LK W SSIDLV+VLKHEIRDGQL+FRGKRVLELSC YGLPGIFACLKGA V
Sbjct: 78 ISLKPDGYLKYWTSSIDLVSVLKHEIRDGQLTFRGKRVLELSCNYGLPGIFACLKGASVV 137
Query: 62 HFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPT 121
HFQD SAET+RCTT+PNVLANL+QAR+RQSRQPES LTPSRQTLAPSV+FYAGDWEELP+
Sbjct: 138 HFQDQSAETVRCTTIPNVLANLKQARDRQSRQPESPLTPSRQTLAPSVNFYAGDWEELPS 197
Query: 122 VLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASE 181
VLS+V++D EV GMSLSFSEEDFMDGCSSQDGSIIG +S SRRSRKLS SRAWER SE
Sbjct: 198 VLSIVKSDGYEVMPGMSLSFSEEDFMDGCSSQDGSIIGHESYSRRSRKLSRSRAWERGSE 257
Query: 182 ADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA-TKKNYVGFNNAARHL 240
ADQGEGGYDVIL+TEI YSVTSLKKLY LIKKCLRPPYGV+YLA TK+ YVGF+N R L
Sbjct: 258 ADQGEGGYDVILMTEISYSVTSLKKLYALIKKCLRPPYGVLYLAPTKRPYVGFSNGVRQL 317
Query: 241 RSLVDEEGIFGAHLIKEMTDRDIWKFFLK 269
RSLVDEEGIFGAHL+K++ DRDIWKFF K
Sbjct: 318 RSLVDEEGIFGAHLVKDLADRDIWKFFHK 346
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828027|ref|XP_002881896.1| hypothetical protein ARALYDRAFT_483439 [Arabidopsis lyrata subsp. lyrata] gi|297327735|gb|EFH58155.1| hypothetical protein ARALYDRAFT_483439 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/268 (80%), Positives = 236/268 (88%), Gaps = 3/268 (1%)
Query: 5 KPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQ 64
K +G LK WESSI LVNVLK+EIRDGQLSFRGKRVLEL C YG+PGIFACLKGA +VHFQ
Sbjct: 94 KNEGSLKSWESSIVLVNVLKNEIRDGQLSFRGKRVLELGCNYGVPGIFACLKGASSVHFQ 153
Query: 65 DLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLS 124
DLSAETIRCTT+PNVLANLEQAR+RQSRQPES LTPSRQ ++ SV FYAG+WEEL TVLS
Sbjct: 154 DLSAETIRCTTIPNVLANLEQARDRQSRQPESPLTPSRQAISTSVRFYAGEWEELSTVLS 213
Query: 125 VVRNDVSE-VTTGMSLSFSEEDFMDGCSSQDGSIIG-QDSSSRRSRKLSGSRAWERASEA 182
++R DV E M+LSFSEEDFMDGCSSQDGSI G QD SSRRSRKLSGSRAWERA+E
Sbjct: 214 IIRTDVFEPAIPTMNLSFSEEDFMDGCSSQDGSIAGQQDFSSRRSRKLSGSRAWERANET 273
Query: 183 DQ-GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLR 241
DQ GE GYDVIL+TEIPYSVTSLKKLY LIKKCLRPPYGV+YLA KK YVGFN+ A+HLR
Sbjct: 274 DQGGECGYDVILMTEIPYSVTSLKKLYSLIKKCLRPPYGVMYLAGKKQYVGFNSGAKHLR 333
Query: 242 SLVDEEGIFGAHLIKEMTDRDIWKFFLK 269
+LVDEE I GAHL+KE TDRDIWKFFLK
Sbjct: 334 NLVDEETILGAHLVKETTDRDIWKFFLK 361
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18406207|ref|NP_565997.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|145331107|ref|NP_001078045.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|14517476|gb|AAK62628.1| At2g43320/T1O24.6 [Arabidopsis thaliana] gi|20196858|gb|AAB64311.2| expressed protein [Arabidopsis thaliana] gi|20197145|gb|AAM14937.1| expressed protein [Arabidopsis thaliana] gi|22136568|gb|AAM91070.1| At2g43320/T1O24.6 [Arabidopsis thaliana] gi|330255156|gb|AEC10250.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|330255157|gb|AEC10251.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust.
Identities = 213/268 (79%), Positives = 236/268 (88%), Gaps = 3/268 (1%)
Query: 5 KPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQ 64
K +G LK WESS+ LVNVLK+EIRDGQLSFRGKRVLEL C +G+PGIFACLKGA +VHFQ
Sbjct: 84 KNEGSLKSWESSVVLVNVLKNEIRDGQLSFRGKRVLELGCNFGVPGIFACLKGASSVHFQ 143
Query: 65 DLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLS 124
DLSAETIRCTT+PNVLANLEQAR+RQSRQPES LTPSRQ ++ SV FYAG+WEEL TVLS
Sbjct: 144 DLSAETIRCTTIPNVLANLEQARDRQSRQPESPLTPSRQAISASVRFYAGEWEELSTVLS 203
Query: 125 VVRNDVSEVTT-GMSLSFSEEDFMDGCSSQDGSIIGQ-DSSSRRSRKLSGSRAWERASEA 182
++R DV E + M+LSFSEEDFMDGCSSQDGSI GQ D SSRRSRKLSGSRAWERA+E
Sbjct: 204 IIRTDVLEPSIPAMNLSFSEEDFMDGCSSQDGSITGQPDFSSRRSRKLSGSRAWERANET 263
Query: 183 DQ-GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLR 241
Q GE GYDVIL+TEIPYS+TSLKKLY LIKKCLRPPYGV+YLA KK YVGFN+ A+HLR
Sbjct: 264 GQEGEYGYDVILMTEIPYSITSLKKLYSLIKKCLRPPYGVMYLAAKKQYVGFNSGAKHLR 323
Query: 242 SLVDEEGIFGAHLIKEMTDRDIWKFFLK 269
+LVDEE I GAHL+KE TDRDIWKFFLK
Sbjct: 324 NLVDEETILGAHLVKETTDRDIWKFFLK 351
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 269 | ||||||
| TAIR|locus:2041076 | 351 | AT2G43320 "AT2G43320" [Arabido | 0.985 | 0.754 | 0.708 | 1.5e-97 | |
| TAIR|locus:2129286 | 290 | AT4G14000 "AT4G14000" [Arabido | 0.412 | 0.382 | 0.512 | 1.5e-39 | |
| ZFIN|ZDB-GENE-090313-192 | 338 | si:dkey-15f17.8 "si:dkey-15f17 | 0.412 | 0.328 | 0.409 | 5.6e-20 | |
| UNIPROTKB|Q2KIJ2 | 373 | METTL18 "Histidine protein met | 0.438 | 0.316 | 0.384 | 2.2e-17 | |
| UNIPROTKB|O95568 | 372 | METTL18 "Histidine protein met | 0.442 | 0.319 | 0.351 | 2e-14 | |
| UNIPROTKB|F1RSC8 | 365 | METTL18 "Uncharacterized prote | 0.468 | 0.345 | 0.364 | 4.6e-14 | |
| DICTYBASE|DDB_G0270580 | 309 | DDB_G0270580 "UPF0558 protein" | 0.263 | 0.229 | 0.473 | 3e-13 | |
| UNIPROTKB|E2R3Y3 | 365 | METTL18 "Uncharacterized prote | 0.420 | 0.309 | 0.344 | 3.5e-13 | |
| MGI|MGI:1917212 | 362 | Mettl18 "methyltransferase lik | 0.401 | 0.298 | 0.313 | 1.1e-12 | |
| RGD|1306783 | 362 | Mettl18 "methyltransferase lik | 0.423 | 0.314 | 0.336 | 1.1e-12 |
| TAIR|locus:2041076 AT2G43320 "AT2G43320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 969 (346.2 bits), Expect = 1.5e-97, P = 1.5e-97
Identities = 190/268 (70%), Positives = 213/268 (79%)
Query: 5 KPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQ 64
K +G LK WESS+ LVNVLK+EIRDGQLSFRGKRVLEL C +G+PGIFACLKGA +VHFQ
Sbjct: 84 KNEGSLKSWESSVVLVNVLKNEIRDGQLSFRGKRVLELGCNFGVPGIFACLKGASSVHFQ 143
Query: 65 DLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLS 124
DLSAETIRCTT+PNVLANLEQAR+RQSRQPES LTPSRQ ++ SV FYAG+WEEL TVLS
Sbjct: 144 DLSAETIRCTTIPNVLANLEQARDRQSRQPESPLTPSRQAISASVRFYAGEWEELSTVLS 203
Query: 125 VVRNDVSEVTT-GMSLSFSEEDFMDGCSSQDGSIIGQ-DXXXXXXXXXXXXXAWERASEA 182
++R DV E + M+LSFSEEDFMDGCSSQDGSI GQ D AWERA+E
Sbjct: 204 IIRTDVLEPSIPAMNLSFSEEDFMDGCSSQDGSITGQPDFSSRRSRKLSGSRAWERANET 263
Query: 183 DQ-GEGGYDVILLTEIPYSVTSXXXXXXXXXXXXRPPYGVVYLATKKNYVGFNNAARHLR 241
Q GE GYDVIL+TEIPYS+TS RPPYGV+YLA KK YVGFN+ A+HLR
Sbjct: 264 GQEGEYGYDVILMTEIPYSITSLKKLYSLIKKCLRPPYGVMYLAAKKQYVGFNSGAKHLR 323
Query: 242 SLVDEEGIFGAHLIKEMTDRDIWKFFLK 269
+LVDEE I GAHL+KE TDRDIWKFFLK
Sbjct: 324 NLVDEETILGAHLVKETTDRDIWKFFLK 351
|
|
| TAIR|locus:2129286 AT4G14000 "AT4G14000" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
Identities = 63/123 (51%), Positives = 82/123 (66%)
Query: 7 DGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL 66
+G LK WE SIDLV L+ E + G LSF GKRVLEL CG+ LPGI+ACLKG+ VHFQD
Sbjct: 86 EGGLKLWEGSIDLVKALEKESQTGNLSFSGKRVLELGCGHALPGIYACLKGSDAVHFQDF 145
Query: 67 SAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVV 126
+AE +RC T+PN+ ANL + SS++ S +T V F+AG+W E+ VL +V
Sbjct: 146 NAEVLRCLTIPNLNANLSEK--------SSSVSVS-ET---EVRFFAGEWSEVHQVLPLV 193
Query: 127 RND 129
+D
Sbjct: 194 NSD 196
|
|
| ZFIN|ZDB-GENE-090313-192 si:dkey-15f17.8 "si:dkey-15f17.8" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 185 (70.2 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
Identities = 50/122 (40%), Positives = 66/122 (54%)
Query: 1 MISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGT 60
+IS +G LK WE + DL+ + +E G++ F GKRVL+L CG GL GI A +GA
Sbjct: 123 LISGVYEGGLKIWECTYDLLEYIDNE---GEV-FSGKRVLDLGCGAGLLGILALKRGAIR 178
Query: 61 VHFQDLSAETIRCTTVPNVLANLEQARERQ----SRQP--ESSLTPSRQTLAPSVHFYAG 114
V FQD ++ I T+PNV N E+ E S P SL S Q L F++G
Sbjct: 179 VDFQDYNSTVIEQLTIPNVFLNCEEDDEDDDDDDSSPPLKRKSLNSS-QELLDHCGFFSG 237
Query: 115 DW 116
DW
Sbjct: 238 DW 239
|
|
| UNIPROTKB|Q2KIJ2 METTL18 "Histidine protein methyltransferase 1 homolog" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 183 (69.5 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 50/130 (38%), Positives = 70/130 (53%)
Query: 1 MISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGT 60
+IS +G LK WE + DL+ L ++ F GK+VL+L CG GL GI A GA
Sbjct: 157 LISGVYEGGLKIWECTFDLLAYLTK----AKVKFAGKKVLDLGCGSGLLGIMALKGGAKE 212
Query: 61 VHFQDLSAETIRCTTVPNVLAN--LEQARERQSRQPESSLTPSRQTLAPSV---HFYAGD 115
+HFQD ++ I T+PNV+AN LE E +P+ R T+A + F++G+
Sbjct: 213 IHFQDYNSVVIDEVTLPNVVANSTLED-EENDVNEPDVKRL-RRSTVAQELCKCRFFSGE 270
Query: 116 WEEL-PTVLS 124
W E VLS
Sbjct: 271 WSEFCKLVLS 280
|
|
| UNIPROTKB|O95568 METTL18 "Histidine protein methyltransferase 1 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 167 (63.8 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 45/128 (35%), Positives = 66/128 (51%)
Query: 1 MISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGT 60
+I+ +G LK WE + DL+ ++ F GK+VL+L CG GL GI A G+
Sbjct: 157 LITGVYEGGLKIWECTFDLLAYFTK----AKVKFAGKKVLDLGCGSGLLGITAFKGGSKE 212
Query: 61 VHFQDLSAETIRCTTVPNVLAN--LEQARERQSRQPE-SSLTPSRQTLAPSVHFYAGDWE 117
+HFQD ++ I T+PNV+AN LE E +P+ + T F++G+W
Sbjct: 213 IHFQDYNSMVIDEVTLPNVVANSTLED-EENDVNEPDVKRCRKPKVTQLYKCRFFSGEWS 271
Query: 118 EL-PTVLS 124
E VLS
Sbjct: 272 EFCKLVLS 279
|
|
| UNIPROTKB|F1RSC8 METTL18 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 171 (65.3 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 51/140 (36%), Positives = 73/140 (52%)
Query: 1 MISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGT 60
+I+ +G LK WE + DL+ ++ F GK+VL+L CG GL GI A GA
Sbjct: 157 LITGVYEGGLKIWECTFDLLAYFTK----AKVKFAGKKVLDLGCGSGLLGIMAFKGGAKE 212
Query: 61 VHFQDLSAETIRCTTVPNVLAN--LEQARERQSRQPE-SSLTPSR--QTLAPSVHFYAGD 115
+HFQD ++ I T+PNV+AN LE E +P+ S+ Q L F++G+
Sbjct: 213 IHFQDYNSVVIDEVTLPNVVANSTLED-EENDLNEPDVKRCRKSKVAQELC-KCRFFSGE 270
Query: 116 WEEL-PTVLSVVRNDVSEVT 134
W E VLS R ++ E T
Sbjct: 271 WSEFCKLVLS--REELFEKT 288
|
|
| DICTYBASE|DDB_G0270580 DDB_G0270580 "UPF0558 protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 167 (63.8 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 36/76 (47%), Positives = 46/76 (60%)
Query: 7 DGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL 66
+G K WE SID++N L E ++ GK+VLE+ CG+GLPGI+ CL V FQD
Sbjct: 127 EGGFKLWECSIDIINYLFEE----KIDLSGKKVLEIGCGHGLPGIY-CLLNGSIVTFQDY 181
Query: 67 SAETIRCTTVPNVLAN 82
+ E I T PNVL N
Sbjct: 182 NEEVIYNLTQPNVLIN 197
|
|
| UNIPROTKB|E2R3Y3 METTL18 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 160 (61.4 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 42/122 (34%), Positives = 66/122 (54%)
Query: 1 MISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGT 60
+I+ +G LK WE + DL+ ++ F GKRVL+L CG GL GI A GA
Sbjct: 152 LITGVYEGGLKIWECTFDLLAYFTK----AKVKFVGKRVLDLGCGSGLLGIVAFKGGAKE 207
Query: 61 VHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQT-LAPSV---HFYAGDW 116
+HFQD ++ I T+PNV+AN ++ + E + R++ +A + F++G+W
Sbjct: 208 IHFQDYNSLVIDEVTLPNVVAN-STLEDKGNDVNEPDVKRCRKSEVAQELSKCRFFSGEW 266
Query: 117 EE 118
E
Sbjct: 267 SE 268
|
|
| MGI|MGI:1917212 Mettl18 "methyltransferase like 18" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 152 (58.6 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 36/115 (31%), Positives = 56/115 (48%)
Query: 7 DGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL 66
+G LK WE + DL+ ++ F G++VL+L CG GL GI A GA VHFQD
Sbjct: 153 EGGLKIWECTFDLLTYFTK----AKVKFAGQKVLDLGCGSGLLGITASKGGAREVHFQDY 208
Query: 67 SAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSV---HFYAGDWEE 118
+ I T+PNV+AN+ + + + + + ++G+W E
Sbjct: 209 NGLVIDEVTLPNVVANVPLQDDSNGKNEPDGKRQRKSEVGREICKCRLFSGEWAE 263
|
|
| RGD|1306783 Mettl18 "methyltransferase like 18" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 152 (58.6 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 41/122 (33%), Positives = 59/122 (48%)
Query: 7 DGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL 66
+G LK WE + DL+ ++ F G++VL+L CG GL GI A GA VHFQD
Sbjct: 153 EGGLKIWECTFDLMTYFTK----AKVKFAGQKVLDLGCGSGLLGITASKGGAREVHFQDY 208
Query: 67 SAETIRCTTVPNVLANLE-QARERQSRQPESSLTPSRQTLAPSV--HFYAGDWEEL-PTV 122
+ I T+PNV+AN+ Q +P + + ++G+W E V
Sbjct: 209 NGLVIDEVTLPNVVANVPLQGDSNGINEPAGKRQRKSEVAQETCKCRLFSGEWAEFCKLV 268
Query: 123 LS 124
LS
Sbjct: 269 LS 270
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 269 | |||
| pfam10294 | 170 | pfam10294, Methyltransf_16, Putative methyltransfe | 0.004 |
| >gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 0.004
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 13 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGI-FACLKGAGTVHFQDLS 67
W++++ L L+ +I G + G VLEL G GL GI A L +V DL
Sbjct: 22 WDAAVVLSKYLEMKITPGGNNLSGLNVLELGSGTGLVGIAVALLLPGASVTITDLE 77
|
Length = 170 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 269 | |||
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.96 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 99.95 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 99.85 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 99.73 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 99.72 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.45 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.42 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.41 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.4 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.39 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.38 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.37 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.35 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.34 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.33 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.29 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.28 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.28 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.26 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.23 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.21 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.21 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.19 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.19 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.19 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.18 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.18 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.17 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.17 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.17 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.15 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.15 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.15 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.15 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.14 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.13 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.13 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.13 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.12 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.12 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.12 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.1 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.09 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.08 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.07 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.07 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.06 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.06 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.05 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.05 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.03 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.03 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.02 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.02 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.01 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.01 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.0 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.0 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.99 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.99 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 98.97 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.97 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.96 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.96 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.96 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 98.95 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.95 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.93 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.93 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.91 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.91 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.9 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 98.9 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.89 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.86 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.86 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.86 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.85 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.84 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.84 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.84 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.84 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 98.83 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.82 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 98.81 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.8 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.8 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.78 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 98.77 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.77 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.77 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.76 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.74 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.74 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.72 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.72 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.72 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.69 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.68 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.68 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.67 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.66 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.66 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.66 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.66 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.66 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.62 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.62 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.61 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.61 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.6 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.6 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.6 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.6 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.59 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 98.52 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.51 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.49 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.49 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.48 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.48 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.47 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.46 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.46 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.46 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.45 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.44 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.44 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.44 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.42 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.42 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.41 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.38 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.38 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.36 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.36 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.35 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.35 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.35 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.34 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.34 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.3 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.3 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.3 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.27 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.26 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.25 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.25 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.25 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.24 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.24 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.24 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 98.24 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.21 | |
| PLN02476 | 278 | O-methyltransferase | 98.19 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.12 | |
| KOG2497 | 262 | consensus Predicted methyltransferase [General fun | 98.1 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.08 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.04 | |
| PLN02366 | 308 | spermidine synthase | 98.01 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.01 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 97.94 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 97.92 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.91 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 97.89 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.86 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.85 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.85 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 97.82 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.79 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.78 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.74 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.7 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.68 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 97.67 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.65 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.65 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.61 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 97.61 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.6 | |
| PLN02823 | 336 | spermine synthase | 97.59 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.52 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.51 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.48 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.47 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.46 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 97.43 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.42 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.35 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.33 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 97.31 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.31 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.23 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 97.22 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.18 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.15 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 97.09 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 97.08 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.03 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.01 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.0 | |
| PHA01634 | 156 | hypothetical protein | 97.0 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.0 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.97 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.94 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 96.86 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.81 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.65 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 96.62 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.6 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.56 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 96.52 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.51 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.48 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 96.44 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 96.32 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 96.22 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.16 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 95.96 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.95 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 95.91 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 95.91 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 95.89 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 95.88 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 95.7 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 95.69 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 95.65 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 95.62 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 95.57 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 95.57 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 95.55 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 95.44 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 95.34 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 94.73 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 94.38 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 94.38 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 94.36 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 93.98 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 93.62 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 93.56 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 93.15 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 93.13 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 92.25 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 92.22 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 92.21 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 92.21 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 92.16 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 91.87 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 91.54 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 91.08 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 90.73 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 90.21 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 90.17 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 89.92 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 89.9 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 88.83 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 88.55 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 88.06 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 87.49 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 87.38 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 87.06 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 87.03 | |
| PRK13699 | 227 | putative methylase; Provisional | 86.17 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 85.52 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 85.09 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 84.04 | |
| PRK13699 | 227 | putative methylase; Provisional | 83.73 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 83.0 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 82.45 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 82.22 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 82.17 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 80.29 |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-30 Score=216.14 Aligned_cols=155 Identities=29% Similarity=0.403 Sum_probs=99.7
Q ss_pred ccCceeeccHHHHHHHHhhhhhc--CCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 7 DGFLKCWESSIDLVNVLKHEIRD--GQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 7 e~G~~vW~as~~La~~L~~~~~~--~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
.+|.++|+||++|++||..+... ....+++++|||||||+|++||++++. ++.+|++||+++ ++ ++++.|+
T Consensus 15 ~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l-----~~l~~Ni 88 (173)
T PF10294_consen 15 GTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VL-----ELLRRNI 88 (173)
T ss_dssp --------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HH-----HHHHHHH
T ss_pred CCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hh-----HHHHHHH
Confidence 57999999999999999986321 235789999999999999999999988 777999999988 77 6666666
Q ss_pred HHhhhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCc
Q 024311 84 EQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSS 163 (269)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 163 (269)
..|.. ....++.+..+||++.... +
T Consensus 89 ~~N~~---------------~~~~~v~v~~L~Wg~~~~~------~---------------------------------- 113 (173)
T PF10294_consen 89 ELNGS---------------LLDGRVSVRPLDWGDELDS------D---------------------------------- 113 (173)
T ss_dssp HTT-----------------------EEEE--TTS-HHH------H----------------------------------
T ss_pred Hhccc---------------cccccccCcEEEecCcccc------c----------------------------------
Confidence 65521 0124677888999873200 0
Q ss_pred ccccccccCchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHH
Q 024311 164 SRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSL 243 (269)
Q Consensus 164 ~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~ 243 (269)
.....+||+||+|||+|+++.+++|+++|+++|+ +++.+|+++++|+ .....|+++
T Consensus 114 -------------------~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~-~~~~vl~~~~~R~----~~~~~F~~~ 169 (173)
T PF10294_consen 114 -------------------LLEPHSFDVILASDVLYDEELFEPLVRTLKRLLK-PNGKVLLAYKRRR----KSEQEFFDR 169 (173)
T ss_dssp -------------------HHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBT-T-TTEEEEEE-S-----TGGCHHHHH
T ss_pred -------------------ccccccCCEEEEecccchHHHHHHHHHHHHHHhC-CCCEEEEEeCEec----HHHHHHHHH
Confidence 0134589999999999999999999999999998 6777999998873 467899999
Q ss_pred hhh
Q 024311 244 VDE 246 (269)
Q Consensus 244 ~~~ 246 (269)
+++
T Consensus 170 ~~k 172 (173)
T PF10294_consen 170 LKK 172 (173)
T ss_dssp H--
T ss_pred hhh
Confidence 985
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-29 Score=222.48 Aligned_cols=195 Identities=43% Similarity=0.634 Sum_probs=150.8
Q ss_pred CCCCCCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHH
Q 024311 1 MISSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL 80 (269)
Q Consensus 1 ~~~g~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~ 80 (269)
++||+||||+++|+||.+|+.++.+.+ ..+..+.||+|||||||+|++|+.+.+.|+.+|+++|+|.++++..+.||+.
T Consensus 83 l~p~vyEGg~k~wecS~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~ 161 (282)
T KOG2920|consen 83 LVPGVYEGGLKLWECSVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNIL 161 (282)
T ss_pred cCCceeecceEEeecHHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeeccccee
Confidence 589999999999999999999999886 4567899999999999999999999999988999999999999999999999
Q ss_pred HHHHHhhhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCccccc
Q 024311 81 ANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQ 160 (269)
Q Consensus 81 ~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 160 (269)
.|...+.. |.+...+......
T Consensus 162 ~~~~~~~~---------------------------~~e~~~~~~i~~s-------------------------------- 182 (282)
T KOG2920|consen 162 VNSHAGVE---------------------------EKENHKVDEILNS-------------------------------- 182 (282)
T ss_pred cchhhhhh---------------------------hhhcccceecccc--------------------------------
Confidence 99866531 1111100000000
Q ss_pred CCcccccccccCchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHH
Q 024311 161 DSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHL 240 (269)
Q Consensus 161 ~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F 240 (269)
.++ +|.-.. ....+||+|++|+++|++...+.+....+.+|.+++|++|+|+|+.|||+|+++.+|
T Consensus 183 --------~l~---dg~~~~---t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aAK~~yFgVgg~i~~f 248 (282)
T KOG2920|consen 183 --------LLS---DGVFNH---TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAAKKLYFGVGGGIEEF 248 (282)
T ss_pred --------ccc---cchhhh---ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhhHhhccCcCcchhhh
Confidence 000 120000 012499999999999999999999644444566699999999999999999999999
Q ss_pred H-HHhhhcCc---eeEEEEeeecCcceEEEEeC
Q 024311 241 R-SLVDEEGI---FGAHLIKEMTDRDIWKFFLK 269 (269)
Q Consensus 241 ~-~~~~~~g~---~~~~~~~~~~~~~i~~~~~~ 269 (269)
- +.|.+... ...+.+.+.-.|.||.+..|
T Consensus 249 ~~~~~~~~d~~~~~~~~~i~~~v~r~i~~~~~~ 281 (282)
T KOG2920|consen 249 NSKLMFDEDVFQISEAKLIRETVKRSILTIEFK 281 (282)
T ss_pred cccccccCCccccccceehhhcCceeEEEEEec
Confidence 4 77777664 35666777779999987654
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-22 Score=168.00 Aligned_cols=170 Identities=26% Similarity=0.366 Sum_probs=129.0
Q ss_pred ccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCC-CCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 7 DGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCG-YGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 7 e~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcG-tGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
+|-..+||++.+|+.++.+++ -.++|++|||||.| |||.||+.|. ...+.|.+||.|++.+ +|++.-..
T Consensus 5 tgnvciwpseeala~~~l~~~----n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~sv-----rnv~ki~~ 75 (201)
T KOG3201|consen 5 TGNVCIWPSEEALAWTILRDP----NKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESV-----RNVEKIRN 75 (201)
T ss_pred CCcEEecccHHHHHHHHHhch----hHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHH-----HHHHHHHh
Confidence 466789999999999999885 46799999999999 6999977664 5567899999999988 56655443
Q ss_pred HhhhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcc
Q 024311 85 QARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSS 164 (269)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 164 (269)
.|.. +.+ .+|.. +.|..
T Consensus 76 ~n~~-------s~~--------tsc~v--lrw~~---------------------------------------------- 92 (201)
T KOG3201|consen 76 SNMA-------SSL--------TSCCV--LRWLI---------------------------------------------- 92 (201)
T ss_pred cccc-------ccc--------ceehh--hHHHH----------------------------------------------
Confidence 3310 000 12222 12211
Q ss_pred cccccccCchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHh
Q 024311 165 RRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLV 244 (269)
Q Consensus 165 ~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~ 244 (269)
|+... .....+||+|++|||+|..+.++.|+++|+.+|+ |.|.|++.++|| |.+++.|++.+
T Consensus 93 -----------~~aqs--q~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~-p~g~Al~fsPRR----g~sL~kF~de~ 154 (201)
T KOG3201|consen 93 -----------WGAQS--QQEQHTFDIILAADCLFFDEHHESLVDTIKSLLR-PSGRALLFSPRR----GQSLQKFLDEV 154 (201)
T ss_pred -----------hhhHH--HHhhCcccEEEeccchhHHHHHHHHHHHHHHHhC-cccceeEecCcc----cchHHHHHHHH
Confidence 11111 1245699999999999999999999999999999 889999999886 67999999999
Q ss_pred hhcCceeEEEEeeecCcceEEEEe
Q 024311 245 DEEGIFGAHLIKEMTDRDIWKFFL 268 (269)
Q Consensus 245 ~~~g~~~~~~~~~~~~~~i~~~~~ 268 (269)
+..|| .+. +.|..|..||+++.
T Consensus 155 ~~~gf-~v~-l~enyde~iwqrh~ 176 (201)
T KOG3201|consen 155 GTVGF-TVC-LEENYDEAIWQRHG 176 (201)
T ss_pred Hhcee-EEE-ecccHhHHHHHHHH
Confidence 99995 444 47888888887654
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-17 Score=142.79 Aligned_cols=138 Identities=21% Similarity=0.289 Sum_probs=104.4
Q ss_pred eeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhh
Q 024311 11 KCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQ 90 (269)
Q Consensus 11 ~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~ 90 (269)
..|.+.+.||+|+..++ ..++||+|||+|+|+||+++++++.|++.|+.+|++|..+ .|+.+|...|.
T Consensus 59 ~~WagG~~lAR~i~~~P----etVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~-----~ai~lNa~ang--- 126 (218)
T COG3897 59 FAWAGGQVLARYIDDHP----ETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE-----QAIRLNAAANG--- 126 (218)
T ss_pred HHHhhhHHHHHHHhcCc----cccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHH-----HHhhcchhhcc---
Confidence 57999999999999985 5889999999999999999999999999999999998776 88999987652
Q ss_pred ccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccc
Q 024311 91 SRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKL 170 (269)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l 170 (269)
.++.+...| .
T Consensus 127 ----------------v~i~~~~~d--------------~---------------------------------------- 136 (218)
T COG3897 127 ----------------VSILFTHAD--------------L---------------------------------------- 136 (218)
T ss_pred ----------------ceeEEeecc--------------c----------------------------------------
Confidence 122221110 0
Q ss_pred cCchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcc-cccccCcchHHHHHHhh
Q 024311 171 SGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK-NYVGFNNAARHLRSLVD 245 (269)
Q Consensus 171 ~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~-~~fg~~~~~~~F~~~~~ 245 (269)
. ..+..||+||++|++|+......|+.++.++.. .+..++|.... .|. ...--.|+...+
T Consensus 137 -----------~-g~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~-~g~~vlvgdp~R~~l--pk~~l~~~a~yq 197 (218)
T COG3897 137 -----------I-GSPPAFDLLLAGDLFYNHTEADRLIPWKDRLAE-AGAAVLVGDPGRAYL--PKKRLEFLAIYQ 197 (218)
T ss_pred -----------c-CCCcceeEEEeeceecCchHHHHHHHHHHHHHh-CCCEEEEeCCCCCCC--chhhhhhhhhcc
Confidence 0 145699999999999999999999998888766 44445555444 343 333445554433
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=142.63 Aligned_cols=179 Identities=23% Similarity=0.242 Sum_probs=119.3
Q ss_pred cCceeeccHHHHHHHHhhhhhcC-----CCCC--CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHH
Q 024311 8 GFLKCWESSIDLVNVLKHEIRDG-----QLSF--RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL 80 (269)
Q Consensus 8 ~G~~vW~as~~La~~L~~~~~~~-----~~~~--~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~ 80 (269)
-.+.+|+++-.+++++.....++ ...+ +.++|||||+|||++|+++|.....+|++||... ++ +|+.
T Consensus 52 ~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~-----~~L~ 125 (248)
T KOG2793|consen 52 ISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VV-----ENLK 125 (248)
T ss_pred eeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchh-hH-----HHHH
Confidence 46789999999999998775421 1112 3567999999999999999985555999999954 44 4555
Q ss_pred HHHHHhhhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCccccc
Q 024311 81 ANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQ 160 (269)
Q Consensus 81 ~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 160 (269)
.|...|....+. ...+|....++|++.+...
T Consensus 126 ~~~~~~~~~l~~------------~g~~v~v~~L~Wg~~~~~~------------------------------------- 156 (248)
T KOG2793|consen 126 FNRDKNNIALNQ------------LGGSVIVAILVWGNALDVS------------------------------------- 156 (248)
T ss_pred Hhhhhhhhhhhh------------cCCceeEEEEecCCcccHh-------------------------------------
Confidence 554333222211 1236777788999864210
Q ss_pred CCcccccccccCchhhhhhcccccCCCC-ccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHH
Q 024311 161 DSSSRRSRKLSGSRAWERASEADQGEGG-YDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARH 239 (269)
Q Consensus 161 ~~~~~~~~~l~gs~~W~~~~~~~~~~~~-fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~ 239 (269)
..... ||+||+|||+|++..++.|+.+|..+|. .+++++++++.|.- .....
T Consensus 157 -----------------------~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~-~~~~i~l~~~lr~~---~~~~~ 209 (248)
T KOG2793|consen 157 -----------------------FRLPNPFDLILASDVVYEEESFEGLVKTLAFLLA-KDGTIFLAYPLRRD---AAWEI 209 (248)
T ss_pred -----------------------hccCCcccEEEEeeeeecCCcchhHHHHHHHHHh-cCCeEEEEEecccc---hHHHH
Confidence 01112 9999999999999999999999999998 55689999887641 11222
Q ss_pred HHHHhh-hcCceeEEEEeeecCcceEEEEe
Q 024311 240 LRSLVD-EEGIFGAHLIKEMTDRDIWKFFL 268 (269)
Q Consensus 240 F~~~~~-~~g~~~~~~~~~~~~~~i~~~~~ 268 (269)
+.-+++ ..+.+.+......++.+-|+.++
T Consensus 210 ~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~ 239 (248)
T KOG2793|consen 210 EVLLFKKDLKIFDVVQESFFKDQESFRIGR 239 (248)
T ss_pred HHHHhhhhhccceeeeEeccCcceeeeeee
Confidence 222222 33445555556666666666554
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.9e-12 Score=106.88 Aligned_cols=147 Identities=20% Similarity=0.314 Sum_probs=95.7
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCC-eEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhcc
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAG-TVHFQDLSAETIRCTTVPNVLANLEQARERQSR 92 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~-~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~ 92 (269)
.++..|++++... .+++|||||||+|..|+.++..++. +|+++|.++.++ ...+.|+..|.
T Consensus 18 ~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~-----~~a~~n~~~n~----- 79 (170)
T PF05175_consen 18 AGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL-----ELAKRNAERNG----- 79 (170)
T ss_dssp HHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH-----HHHHHHHHHTT-----
T ss_pred HHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH-----HHHHHHHHhcC-----
Confidence 4677888888775 4679999999999999999988775 799999999998 44555655441
Q ss_pred CCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 024311 93 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG 172 (269)
Q Consensus 93 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~g 172 (269)
.. +++++..|+-+.
T Consensus 80 ------------~~-~v~~~~~d~~~~----------------------------------------------------- 93 (170)
T PF05175_consen 80 ------------LE-NVEVVQSDLFEA----------------------------------------------------- 93 (170)
T ss_dssp ------------CT-TEEEEESSTTTT-----------------------------------------------------
T ss_pred ------------cc-cccccccccccc-----------------------------------------------------
Confidence 11 155544443321
Q ss_pred chhhhhhcccccCCCCccEEEEeccccccC-----CHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhc
Q 024311 173 SRAWERASEADQGEGGYDVILLTEIPYSVT-----SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEE 247 (269)
Q Consensus 173 s~~W~~~~~~~~~~~~fDlIlasD~iY~~~-----~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~ 247 (269)
....+||+|++.=.++.-. ....+++...++|+ |+|.+++...+.. +.... +++.
T Consensus 94 -----------~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk-~~G~l~lv~~~~~-----~~~~~---l~~~ 153 (170)
T PF05175_consen 94 -----------LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLK-PGGRLFLVINSHL-----GYERL---LKEL 153 (170)
T ss_dssp -----------CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEE-EEEEEEEEEETTS-----CHHHH---HHHH
T ss_pred -----------ccccceeEEEEccchhcccccchhhHHHHHHHHHHhcc-CCCEEEEEeecCC-----ChHHH---HHHh
Confidence 1346999999965544333 25667777788998 8999988765432 23333 3322
Q ss_pred CceeEEEEeeecCcceEE
Q 024311 248 GIFGAHLIKEMTDRDIWK 265 (269)
Q Consensus 248 g~~~~~~~~~~~~~~i~~ 265 (269)
|-.++++.+....-||+
T Consensus 154 -f~~~~~~~~~~~~~v~~ 170 (170)
T PF05175_consen 154 -FGDVEVVAKNKGFRVLR 170 (170)
T ss_dssp -HS--EEEEEESSEEEEE
T ss_pred -cCCEEEEEECCCEEEeC
Confidence 33566766666665554
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.1e-12 Score=116.03 Aligned_cols=137 Identities=20% Similarity=0.249 Sum_probs=97.6
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.++|++|||+|||+|..++.++..|+++|++.|.++.++.. .+...+... ...++++.
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q---~~a~~~~~~-------------------~~~~i~~~ 177 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQ---FEAVRKLLG-------------------NDQRAHLL 177 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHH---HHHHHHhcC-------------------CCCCeEEE
Confidence 45789999999999999998888898889999999877632 222211100 01346665
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.++.++.+ ...+||+|
T Consensus 178 ~~d~e~lp----------------------------------------------------------------~~~~FD~V 193 (322)
T PRK15068 178 PLGIEQLP----------------------------------------------------------------ALKAFDTV 193 (322)
T ss_pred eCCHHHCC----------------------------------------------------------------CcCCcCEE
Confidence 55543321 14589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEc-------------cccccc-----CcchHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATK-------------KNYVGF-----NNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k-------------~~~fg~-----~~~~~~F~~~~~~~g~~~~~~ 254 (269)
++..++|+..+...+++.+.+.|+ |+|.+++.+- .+|... -.+..++.+.+++.||-..++
T Consensus 194 ~s~~vl~H~~dp~~~L~~l~~~Lk-pGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~ 272 (322)
T PRK15068 194 FSMGVLYHRRSPLDHLKQLKDQLV-PGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWLERAGFKDVRI 272 (322)
T ss_pred EECChhhccCCHHHHHHHHHHhcC-CCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHHHHcCCceEEE
Confidence 999999999999999999999998 8998876531 122111 125678899999999866666
Q ss_pred Ee
Q 024311 255 IK 256 (269)
Q Consensus 255 ~~ 256 (269)
+.
T Consensus 273 ~~ 274 (322)
T PRK15068 273 VD 274 (322)
T ss_pred Ee
Confidence 43
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-11 Score=103.67 Aligned_cols=127 Identities=20% Similarity=0.236 Sum_probs=86.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++++|||||||+|..++.++..+. +|+++|+++++++. .+.|...+. .++++..+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~~~~~-------------------~~~~~~~~ 73 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKE-----LRENAKLNN-------------------VGLDVVMT 73 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHH-----HHHHHHHcC-------------------CceEEEEc
Confidence 467899999999999999998887 89999999999843 344443220 12344444
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|+... ...+||+|++
T Consensus 74 d~~~~-----------------------------------------------------------------~~~~fD~Vi~ 88 (179)
T TIGR00537 74 DLFKG-----------------------------------------------------------------VRGKFDVILF 88 (179)
T ss_pred ccccc-----------------------------------------------------------------cCCcccEEEE
Confidence 43221 1237898887
Q ss_pred eccccccC---------------------CHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEE
Q 024311 195 TEIPYSVT---------------------SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAH 253 (269)
Q Consensus 195 sD~iY~~~---------------------~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~ 253 (269)
+-..+... .++.+++.+.++|+ |+|++++..... .+..++++.+++.|+ ..+
T Consensus 89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~~~~~~~~~-----~~~~~~~~~l~~~gf-~~~ 161 (179)
T TIGR00537 89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILK-EGGRVQLIQSSL-----NGEPDTFDKLDERGF-RYE 161 (179)
T ss_pred CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhC-CCCEEEEEEecc-----CChHHHHHHHHhCCC-eEE
Confidence 64433221 14567888888998 889888765432 247889999999996 555
Q ss_pred EEeee
Q 024311 254 LIKEM 258 (269)
Q Consensus 254 ~~~~~ 258 (269)
++.+.
T Consensus 162 ~~~~~ 166 (179)
T TIGR00537 162 IVAER 166 (179)
T ss_pred EEEEe
Confidence 55543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-11 Score=114.93 Aligned_cols=152 Identities=20% Similarity=0.214 Sum_probs=100.7
Q ss_pred eccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhcc
Q 024311 13 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR 92 (269)
Q Consensus 13 W~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~ 92 (269)
|.+.+.....+... ...+|++|||+|||+|...+.++..|+.+|++.|.++.++..+ ..++....
T Consensus 104 ~~s~~~~~~~l~~l-----~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~--~~~~~~~~-------- 168 (314)
T TIGR00452 104 WRSDIKWDRVLPHL-----SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF--EAVRKLLD-------- 168 (314)
T ss_pred HHHHHHHHHHHHhc-----CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH--HHHHHHhc--------
Confidence 55554444444332 2467999999999999998888888888899999999887432 11211110
Q ss_pred CCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 024311 93 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG 172 (269)
Q Consensus 93 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~g 172 (269)
...++++..++.++.+
T Consensus 169 ------------~~~~v~~~~~~ie~lp---------------------------------------------------- 184 (314)
T TIGR00452 169 ------------NDKRAILEPLGIEQLH---------------------------------------------------- 184 (314)
T ss_pred ------------cCCCeEEEECCHHHCC----------------------------------------------------
Confidence 0123333333322110
Q ss_pred chhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcc-------------ccc-----ccC
Q 024311 173 SRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK-------------NYV-----GFN 234 (269)
Q Consensus 173 s~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~-------------~~f-----g~~ 234 (269)
....||+|++..++|+..+....++.++++|+ |+|.+++.+.. +|. -..
T Consensus 185 ------------~~~~FD~V~s~gvL~H~~dp~~~L~el~r~Lk-pGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~fl 251 (314)
T TIGR00452 185 ------------ELYAFDTVFSMGVLYHRKSPLEHLKQLKHQLV-IKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFI 251 (314)
T ss_pred ------------CCCCcCEEEEcchhhccCCHHHHHHHHHHhcC-CCCEEEEEEEEecCccccccCchHHHHhccccccC
Confidence 12379999999999999999999999999999 89988875311 110 011
Q ss_pred cchHHHHHHhhhcCceeEEEEe
Q 024311 235 NAARHLRSLVDEEGIFGAHLIK 256 (269)
Q Consensus 235 ~~~~~F~~~~~~~g~~~~~~~~ 256 (269)
.+..+....+++.||-.++++.
T Consensus 252 pS~~~L~~~L~~aGF~~V~i~~ 273 (314)
T TIGR00452 252 PSVSALKNWLEKVGFENFRILD 273 (314)
T ss_pred CCHHHHHHHHHHCCCeEEEEEe
Confidence 2566778889999997766643
|
Known examples to date are restricted to the proteobacteria. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.4e-12 Score=97.59 Aligned_cols=106 Identities=23% Similarity=0.313 Sum_probs=75.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
++.+|||||||+|..++.+++ .+..+|++.|+++++++. .+.|.... ...++++++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~i~~~~ 58 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEI-----ARERAAEE-----------------GLSDRITFVQ 58 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHH-----HHHHHHHT-----------------TTTTTEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHH-----HHHHHHhc-----------------CCCCCeEEEE
Confidence 478999999999999999888 234489999999999954 44444221 1235788887
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
.|+ ... .....+||+|+
T Consensus 59 ~d~-~~~--------------------------------------------------------------~~~~~~~D~v~ 75 (112)
T PF12847_consen 59 GDA-EFD--------------------------------------------------------------PDFLEPFDLVI 75 (112)
T ss_dssp SCC-HGG--------------------------------------------------------------TTTSSCEEEEE
T ss_pred Ccc-ccC--------------------------------------------------------------cccCCCCCEEE
Confidence 777 210 01344799999
Q ss_pred Eec-ccccc---CCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 194 LTE-IPYSV---TSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 194 asD-~iY~~---~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+.. +.... +....+++.+.++|+ |+|+++|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~lvi~~ 111 (112)
T PF12847_consen 76 CSGFTLHFLLPLDERRRVLERIRRLLK-PGGRLVINT 111 (112)
T ss_dssp ECSGSGGGCCHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ECCCccccccchhHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 988 33212 345678889999999 899999875
|
... |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=113.02 Aligned_cols=62 Identities=27% Similarity=0.344 Sum_probs=50.5
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
+......++|.+. ..+|++|||+|||+|+++|+|+++||++|+++|++|..+ .+.+.|+..|
T Consensus 146 ~TT~lcl~~l~~~------~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av-----~~a~~N~~~N 207 (295)
T PF06325_consen 146 PTTRLCLELLEKY------VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAV-----EAARENAELN 207 (295)
T ss_dssp HHHHHHHHHHHHH------SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHH-----HHHHHHHHHT
T ss_pred HHHHHHHHHHHHh------ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHH-----HHHHHHHHHc
Confidence 5566667777765 457889999999999999999999999999999999988 5566666555
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-11 Score=112.86 Aligned_cols=140 Identities=24% Similarity=0.245 Sum_probs=95.4
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccC
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ 93 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~ 93 (269)
+....-.++|.+. ..+|++|||+|||+|+++|+|+++||++|+++|++|..++- .+.|+++|-..
T Consensus 147 pTT~lcL~~Le~~------~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~a-a~eNa~~N~v~-------- 211 (300)
T COG2264 147 PTTSLCLEALEKL------LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEA-ARENARLNGVE-------- 211 (300)
T ss_pred hhHHHHHHHHHHh------hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHH-HHHHHHHcCCc--------
Confidence 5555666677665 34899999999999999999999999999999999998854 34566555311
Q ss_pred CCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 024311 94 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS 173 (269)
Q Consensus 94 ~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs 173 (269)
..++. .....
T Consensus 212 -------------~~~~~---~~~~~------------------------------------------------------ 221 (300)
T COG2264 212 -------------LLVQA---KGFLL------------------------------------------------------ 221 (300)
T ss_pred -------------hhhhc---ccccc------------------------------------------------------
Confidence 00000 00000
Q ss_pred hhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEE
Q 024311 174 RAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAH 253 (269)
Q Consensus 174 ~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~ 253 (269)
......++||+|+|. ++=+ -+..|+.-+.++++ |+|.+.++.-- .+....+.+.++++||...+
T Consensus 222 -------~~~~~~~~~DvIVAN-ILA~--vl~~La~~~~~~lk-pgg~lIlSGIl-----~~q~~~V~~a~~~~gf~v~~ 285 (300)
T COG2264 222 -------LEVPENGPFDVIVAN-ILAE--VLVELAPDIKRLLK-PGGRLILSGIL-----EDQAESVAEAYEQAGFEVVE 285 (300)
T ss_pred -------hhhcccCcccEEEeh-hhHH--HHHHHHHHHHHHcC-CCceEEEEeeh-----HhHHHHHHHHHHhCCCeEeE
Confidence 001234699999983 3222 24477888888998 88988887522 23578899999999985444
Q ss_pred E
Q 024311 254 L 254 (269)
Q Consensus 254 ~ 254 (269)
+
T Consensus 286 ~ 286 (300)
T COG2264 286 V 286 (300)
T ss_pred E
Confidence 4
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=113.46 Aligned_cols=131 Identities=17% Similarity=0.252 Sum_probs=92.5
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
...+.+|||+|||+|.+++.++..|+ +|++.|.++++++.+ +.+..... ...++.+.
T Consensus 129 ~~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~A-----r~~~~~~~-----------------~~~~i~~~ 185 (322)
T PLN02396 129 PFEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIA-----RLHADMDP-----------------VTSTIEYL 185 (322)
T ss_pred CCCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHH-----HHHHHhcC-----------------cccceeEE
Confidence 35788999999999999998888877 899999999998543 22221110 01234444
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.++-++.+ ...++||+|
T Consensus 186 ~~dae~l~---------------------------------------------------------------~~~~~FD~V 202 (322)
T PLN02396 186 CTTAEKLA---------------------------------------------------------------DEGRKFDAV 202 (322)
T ss_pred ecCHHHhh---------------------------------------------------------------hccCCCCEE
Confidence 33322110 134589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc-----------------ccC-------cchHHHHHHhhhcC
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV-----------------GFN-------NAARHLRSLVDEEG 248 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f-----------------g~~-------~~~~~F~~~~~~~g 248 (269)
++.+++++..+.+.+++.+.++|+ |+|.+++++-.+.+ ..+ -...++...+++.|
T Consensus 203 i~~~vLeHv~d~~~~L~~l~r~Lk-PGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aG 281 (322)
T PLN02396 203 LSLEVIEHVANPAEFCKSLSALTI-PNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRAS 281 (322)
T ss_pred EEhhHHHhcCCHHHHHHHHHHHcC-CCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcC
Confidence 999999999999999999999999 99999988532210 001 13577888888998
Q ss_pred ce
Q 024311 249 IF 250 (269)
Q Consensus 249 ~~ 250 (269)
+-
T Consensus 282 f~ 283 (322)
T PLN02396 282 VD 283 (322)
T ss_pred Ce
Confidence 73
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.7e-11 Score=111.09 Aligned_cols=134 Identities=21% Similarity=0.252 Sum_probs=95.0
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.++.+|||+|||+|...+.++.. ++ +|++.|+++.+++.+ +.+...+ ....+++|.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~-~v~gvD~s~~~i~~a-----~~~~~~~-----------------g~~~~v~~~ 173 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGA-NVKGITLSPVQAARA-----NALAAAQ-----------------GLSDKVSFQ 173 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCC-EEEEEECCHHHHHHH-----HHHHHhc-----------------CCCCceEEE
Confidence 46789999999999999887764 55 899999999988442 2232211 012356666
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.+ ..++.||+|
T Consensus 174 ~~D~~~~~---------------------------------------------------------------~~~~~FD~V 190 (340)
T PLN02244 174 VADALNQP---------------------------------------------------------------FEDGQFDLV 190 (340)
T ss_pred EcCcccCC---------------------------------------------------------------CCCCCccEE
Confidence 66544321 134689999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcc-c------------------------ccccCcchHHHHHHhhhc
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK-N------------------------YVGFNNAARHLRSLVDEE 247 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~-~------------------------~fg~~~~~~~F~~~~~~~ 247 (269)
++.+++++..+...+++.+.++|+ |+|+++++.-. + ++....+..++...+++.
T Consensus 191 ~s~~~~~h~~d~~~~l~e~~rvLk-pGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~a 269 (340)
T PLN02244 191 WSMESGEHMPDKRKFVQELARVAA-PGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESL 269 (340)
T ss_pred EECCchhccCCHHHHHHHHHHHcC-CCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHC
Confidence 999999999899999999999999 89998886311 0 110111467888999999
Q ss_pred CceeEEE
Q 024311 248 GIFGAHL 254 (269)
Q Consensus 248 g~~~~~~ 254 (269)
||..+++
T Consensus 270 Gf~~v~~ 276 (340)
T PLN02244 270 GLQDIKT 276 (340)
T ss_pred CCCeeEe
Confidence 9855544
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.5e-12 Score=112.64 Aligned_cols=110 Identities=22% Similarity=0.358 Sum_probs=80.7
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.+.|++|||+|||-|+++.-+|+.|+ +|++.|.+++.++... +-...+ .-++
T Consensus 57 ~l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak-----~ha~e~-------------------gv~i--- 108 (243)
T COG2227 57 DLPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAK-----LHALES-------------------GVNI--- 108 (243)
T ss_pred CCCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHH-----Hhhhhc-------------------cccc---
Confidence 37899999999999999999999997 8999999998875431 111000 0011
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
||.... +++ .....++||+|
T Consensus 109 --~y~~~~-------------------------------------~ed---------------------l~~~~~~FDvV 128 (243)
T COG2227 109 --DYRQAT-------------------------------------VED---------------------LASAGGQFDVV 128 (243)
T ss_pred --cchhhh-------------------------------------HHH---------------------HHhcCCCccEE
Confidence 111110 000 00133799999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV 231 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f 231 (269)
++-|++-+.++.+.+++.+.++++ |+|++++++-.|++
T Consensus 129 ~cmEVlEHv~dp~~~~~~c~~lvk-P~G~lf~STinrt~ 166 (243)
T COG2227 129 TCMEVLEHVPDPESFLRACAKLVK-PGGILFLSTINRTL 166 (243)
T ss_pred EEhhHHHccCCHHHHHHHHHHHcC-CCcEEEEeccccCH
Confidence 999999999999999999999999 89999999766543
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-11 Score=99.57 Aligned_cols=108 Identities=24% Similarity=0.383 Sum_probs=81.5
Q ss_pred CCCEEEEEcCCCCHHHHHHH-HcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFAC-LKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa-~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
++.+|||||||+|..++.++ ..+ ..+|++.|+++++++.+ +.++... .. ++++|.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a-----~~~~~~~-----------------~~-~ni~~~ 59 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYA-----KKRAKEL-----------------GL-DNIEFI 59 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHH-----HHHHHHT-----------------TS-TTEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHh-----hcccccc-----------------cc-cccceE
Confidence 57899999999999998888 443 35899999999999654 2222211 01 267887
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|+.+.+. ...++||+|
T Consensus 60 ~~d~~~l~~--------------------------------------------------------------~~~~~~D~I 77 (152)
T PF13847_consen 60 QGDIEDLPQ--------------------------------------------------------------ELEEKFDII 77 (152)
T ss_dssp ESBTTCGCG--------------------------------------------------------------CSSTTEEEE
T ss_pred Eeehhcccc--------------------------------------------------------------ccCCCeeEE
Confidence 777765320 011699999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcc
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK 228 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~ 228 (269)
++..++|+......+++.+.++|+ ++|++++....
T Consensus 78 ~~~~~l~~~~~~~~~l~~~~~~lk-~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFPDPEKVLKNIIRLLK-PGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTSHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred EEcCchhhccCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence 999999999999999999999999 89999888655
|
... |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-11 Score=89.66 Aligned_cols=95 Identities=24% Similarity=0.391 Sum_probs=68.6
Q ss_pred EEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecCCCCCc
Q 024311 40 LELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEEL 119 (269)
Q Consensus 40 LELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~ 119 (269)
||+|||+|.....++..+..+|+++|.++++++. .+.+.. ...+.+...|....
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~-----~~~~~~---------------------~~~~~~~~~d~~~l 54 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQ-----ARKRLK---------------------NEGVSFRQGDAEDL 54 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHH-----HHHHTT---------------------TSTEEEEESBTTSS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHH-----HHhccc---------------------ccCchheeehHHhC
Confidence 8999999999988888756699999999998843 232221 01223444443332
Q ss_pred chhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEecccc
Q 024311 120 PTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPY 199 (269)
Q Consensus 120 ~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY 199 (269)
+ ..++.||+|++..+++
T Consensus 55 ~---------------------------------------------------------------~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 55 P---------------------------------------------------------------FPDNSFDVVFSNSVLH 71 (95)
T ss_dssp S---------------------------------------------------------------S-TT-EEEEEEESHGG
T ss_pred c---------------------------------------------------------------ccccccccccccccee
Confidence 1 2456999999999999
Q ss_pred ccCCHHHHHHHHHHhcCCCCeEEEE
Q 024311 200 SVTSLKKLYLLIKKCLRPPYGVVYL 224 (269)
Q Consensus 200 ~~~~~~~L~~~l~~~L~~p~g~~~v 224 (269)
+.+..+.+++.+.++|+ |+|++++
T Consensus 72 ~~~~~~~~l~e~~rvLk-~gG~l~~ 95 (95)
T PF08241_consen 72 HLEDPEAALREIYRVLK-PGGRLVI 95 (95)
T ss_dssp GSSHHHHHHHHHHHHEE-EEEEEEE
T ss_pred eccCHHHHHHHHHHHcC-cCeEEeC
Confidence 99999999999999999 8998875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-11 Score=110.59 Aligned_cols=111 Identities=22% Similarity=0.345 Sum_probs=78.9
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCcc-CCCCeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQ-TLAPSVHF 111 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 111 (269)
.+.|++|||+|||+||++.-+|+.|+ .|++.|..+++++- .|.. ... + |... ....+++|
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~v---A~~h--~~~---------d----P~~~~~~~y~l~~ 147 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEV---ANEH--KKM---------D----PVLEGAIAYRLEY 147 (282)
T ss_pred ccCCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHH---HHHh--hhc---------C----chhccccceeeeh
Confidence 34578999999999999999999998 89999999998843 2221 100 0 1000 00111111
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
.+.+-+ ...++||.
T Consensus 148 ~~~~~E------------------------------------------------------------------~~~~~fDa 161 (282)
T KOG1270|consen 148 EDTDVE------------------------------------------------------------------GLTGKFDA 161 (282)
T ss_pred hhcchh------------------------------------------------------------------hcccccce
Confidence 111110 13456999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccc
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN 229 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~ 229 (269)
|+++|++.+..+.+.+++.+-++|+ |+|..+|++-.+
T Consensus 162 VvcsevleHV~dp~~~l~~l~~~lk-P~G~lfittinr 198 (282)
T KOG1270|consen 162 VVCSEVLEHVKDPQEFLNCLSALLK-PNGRLFITTINR 198 (282)
T ss_pred eeeHHHHHHHhCHHHHHHHHHHHhC-CCCceEeeehhh
Confidence 9999999999999999999999999 889999997554
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.9e-10 Score=100.99 Aligned_cols=134 Identities=24% Similarity=0.299 Sum_probs=91.9
Q ss_pred eccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhcc
Q 024311 13 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR 92 (269)
Q Consensus 13 W~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~ 92 (269)
.+.+..+.++|... ..++++|||+|||+|..++.+++.|+.+|+++|+++.+++ ..+.|...+.
T Consensus 103 h~tt~~~l~~l~~~------~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~-----~A~~n~~~~~----- 166 (250)
T PRK00517 103 HPTTRLCLEALEKL------VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVE-----AARENAELNG----- 166 (250)
T ss_pred CHHHHHHHHHHHhh------cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHH-----HHHHHHHHcC-----
Confidence 56667777777654 2368899999999999999999999878999999999984 4455554321
Q ss_pred CCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 024311 93 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG 172 (269)
Q Consensus 93 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~g 172 (269)
+...+.+ .
T Consensus 167 ------------~~~~~~~-----------------------------------------------------------~- 174 (250)
T PRK00517 167 ------------VELNVYL-----------------------------------------------------------P- 174 (250)
T ss_pred ------------CCceEEE-----------------------------------------------------------c-
Confidence 0001100 0
Q ss_pred chhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeE
Q 024311 173 SRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGA 252 (269)
Q Consensus 173 s~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~ 252 (269)
....+||+|++. .. ...+..++..+.++|+ |+|.++++.-.. .....+...+++.|+...
T Consensus 175 -----------~~~~~fD~Vvan-i~--~~~~~~l~~~~~~~Lk-pgG~lilsgi~~-----~~~~~v~~~l~~~Gf~~~ 234 (250)
T PRK00517 175 -----------QGDLKADVIVAN-IL--ANPLLELAPDLARLLK-PGGRLILSGILE-----EQADEVLEAYEEAGFTLD 234 (250)
T ss_pred -----------cCCCCcCEEEEc-Cc--HHHHHHHHHHHHHhcC-CCcEEEEEECcH-----hhHHHHHHHHHHCCCEEE
Confidence 011279999984 22 2335677888888998 899998875332 246788899999997444
Q ss_pred EE
Q 024311 253 HL 254 (269)
Q Consensus 253 ~~ 254 (269)
++
T Consensus 235 ~~ 236 (250)
T PRK00517 235 EV 236 (250)
T ss_pred EE
Confidence 33
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.6e-10 Score=98.14 Aligned_cols=54 Identities=33% Similarity=0.425 Sum_probs=43.2
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.+..|++.+.... ...+.+|||+|||+|..++.++..++.+|+++|+++.+++.
T Consensus 21 ds~~l~~~l~~~~-----~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~ 74 (223)
T PRK14967 21 DTQLLADALAAEG-----LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRS 74 (223)
T ss_pred cHHHHHHHHHhcc-----cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence 4566777776531 23567999999999999999888877799999999998843
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-10 Score=98.98 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=34.6
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.++.+|||+|||+|..++.++..|. +|++.|.++.+++.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~ 67 (197)
T PRK11207 29 VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIAN 67 (197)
T ss_pred CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 3578999999999999999988876 89999999999854
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.1e-10 Score=100.02 Aligned_cols=134 Identities=23% Similarity=0.319 Sum_probs=92.3
Q ss_pred CCCCEEEEEcCCCCHHHHHHHH-cCC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACL-KGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~-~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
-.|.+|||+|||+|..++.++. .++ .+|+++|.++.+++. .+.|..... ..++++
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~-----A~~~~~~~g------------------~~~v~~ 132 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAK-----ARANARKAG------------------YTNVEF 132 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHH-----HHHHHHHcC------------------CCCEEE
Confidence 3688999999999998876654 354 379999999999854 334442210 124555
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|++..+ ...+.||+
T Consensus 133 ~~~d~~~l~---------------------------------------------------------------~~~~~fD~ 149 (272)
T PRK11873 133 RLGEIEALP---------------------------------------------------------------VADNSVDV 149 (272)
T ss_pred EEcchhhCC---------------------------------------------------------------CCCCceeE
Confidence 555543321 12358999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcc--------------cccc---cCcchHHHHHHhhhcCceeEEE
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK--------------NYVG---FNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~--------------~~fg---~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
|++.-+++.....+.+++.+.++|+ |+|++++..-. .+.+ ......++.+.+++.||...++
T Consensus 150 Vi~~~v~~~~~d~~~~l~~~~r~Lk-pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 150 IISNCVINLSPDKERVFKEAFRVLK-PGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred EEEcCcccCCCCHHHHHHHHHHHcC-CCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEE
Confidence 9998888888888999999999999 89998885210 0101 0124678999999999865544
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.7e-10 Score=101.59 Aligned_cols=54 Identities=22% Similarity=0.333 Sum_probs=43.2
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+......++|... ..++++|||+|||+|..++.+++.|+++|+++|+++.+++.
T Consensus 144 ~tt~l~l~~l~~~------~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~ 197 (288)
T TIGR00406 144 PTTSLCLEWLEDL------DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVES 197 (288)
T ss_pred HHHHHHHHHHHhh------cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence 5555555555543 23678999999999999999999998899999999999843
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.7e-09 Score=90.08 Aligned_cols=58 Identities=28% Similarity=0.358 Sum_probs=45.1
Q ss_pred CCCCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 3 SSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 3 ~g~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+|+|.- ++-+..|++++.. .++++|||+|||+|..++.++..+. +|+++|+++++++.
T Consensus 3 ~~~~~p----~~~~~~l~~~~~~--------~~~~~vLd~G~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~ 60 (188)
T PRK14968 3 DEVYEP----AEDSFLLAENAVD--------KKGDRVLEVGTGSGIVAIVAAKNGK-KVVGVDINPYAVEC 60 (188)
T ss_pred CcccCc----chhHHHHHHhhhc--------cCCCEEEEEccccCHHHHHHHhhcc-eEEEEECCHHHHHH
Confidence 556633 5667777777643 3677999999999999988887754 89999999999843
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-09 Score=95.95 Aligned_cols=155 Identities=21% Similarity=0.280 Sum_probs=99.9
Q ss_pred HHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCC
Q 024311 20 VNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLT 99 (269)
Q Consensus 20 a~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~ 99 (269)
++|+.... ...++++|||||||+|..+..++..++ +|+++|.++.++. ..+.|....
T Consensus 37 ~~~l~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~-----~a~~~~~~~------------- 93 (233)
T PRK05134 37 LNYIREHA----GGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIE-----VARLHALES------------- 93 (233)
T ss_pred HHHHHHhc----cCCCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHH-----HHHHHHHHc-------------
Confidence 34555543 245788999999999999988888776 7999999999873 334443221
Q ss_pred CCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhh
Q 024311 100 PSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERA 179 (269)
Q Consensus 100 ~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~ 179 (269)
...+++...++...+
T Consensus 94 ------~~~~~~~~~~~~~~~----------------------------------------------------------- 108 (233)
T PRK05134 94 ------GLKIDYRQTTAEELA----------------------------------------------------------- 108 (233)
T ss_pred ------CCceEEEecCHHHhh-----------------------------------------------------------
Confidence 011223222222110
Q ss_pred cccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccc--------------ccc----------cCc
Q 024311 180 SEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN--------------YVG----------FNN 235 (269)
Q Consensus 180 ~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~--------------~fg----------~~~ 235 (269)
+ ...++||+|+++.++.+......+++.+.++|+ |+|.++++...+ .++ .--
T Consensus 109 -~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (233)
T PRK05134 109 -A--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVK-PGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFI 184 (233)
T ss_pred -h--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcC-CCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcC
Confidence 0 123589999999999999899999999999998 889988874211 000 001
Q ss_pred chHHHHHHhhhcCceeEEEE--eeecCcceEEE
Q 024311 236 AARHLRSLVDEEGIFGAHLI--KEMTDRDIWKF 266 (269)
Q Consensus 236 ~~~~F~~~~~~~g~~~~~~~--~~~~~~~i~~~ 266 (269)
...++.+.+++.|+-..+.. ....-..+|+.
T Consensus 185 ~~~~~~~~l~~~Gf~~v~~~~~~~~~~~~~~~~ 217 (233)
T PRK05134 185 KPSELAAWLRQAGLEVQDITGLHYNPLTNRWKL 217 (233)
T ss_pred CHHHHHHHHHHCCCeEeeeeeEEechhhcceee
Confidence 34568889999998544432 22234556654
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-09 Score=93.33 Aligned_cols=118 Identities=25% Similarity=0.311 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
++.+|||+|||+|..++.+++ .+..+|++.|.++++++.+ +.|...+. . +++++..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A-----~~~~~~~~-----------------l-~~i~~~~ 101 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFL-----REVAAELG-----------------L-KNVTVVH 101 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHH-----HHHHHHcC-----------------C-CCEEEEe
Confidence 388999999999999988775 4446999999999998543 34443220 1 1255544
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+. ...++||+|+
T Consensus 102 ~d~~~~----------------------------------------------------------------~~~~~fDlV~ 117 (187)
T PRK00107 102 GRAEEF----------------------------------------------------------------GQEEKFDVVT 117 (187)
T ss_pred ccHhhC----------------------------------------------------------------CCCCCccEEE
Confidence 443221 0135899999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCce
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~ 250 (269)
+.. ...++.+++.+.++|+ |+|++++..... ...++.+..+..|+.
T Consensus 118 ~~~----~~~~~~~l~~~~~~Lk-pGG~lv~~~~~~------~~~~l~~~~~~~~~~ 163 (187)
T PRK00107 118 SRA----VASLSDLVELCLPLLK-PGGRFLALKGRD------PEEEIAELPKALGGK 163 (187)
T ss_pred Ecc----ccCHHHHHHHHHHhcC-CCeEEEEEeCCC------hHHHHHHHHHhcCce
Confidence 853 2457889999999999 899988775443 356788887888874
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.5e-10 Score=95.17 Aligned_cols=122 Identities=21% Similarity=0.313 Sum_probs=79.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
+++.+|||+|||+|..++.++..+ ..+|++.|.++.+++. ++.|...+. . .+++++
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~-----a~~~~~~~~-----------------~-~~i~~i 97 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAF-----LREVKAELG-----------------L-NNVEIV 97 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHH-----HHHHHHHhC-----------------C-CCeEEE
Confidence 468899999999999998877654 3589999999998854 233332210 1 245666
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+. ...++||+|
T Consensus 98 ~~d~~~~----------------------------------------------------------------~~~~~fD~I 113 (181)
T TIGR00138 98 NGRAEDF----------------------------------------------------------------QHEEQFDVI 113 (181)
T ss_pred ecchhhc----------------------------------------------------------------cccCCccEE
Confidence 5554431 023589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCce
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~ 250 (269)
++ +. ...++.+++.+.++|+ |+|++++.....+. ..+....+.+...|+.
T Consensus 114 ~s-~~---~~~~~~~~~~~~~~Lk-pgG~lvi~~~~~~~---~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 114 TS-RA---LASLNVLLELTLNLLK-VGGYFLAYKGKKYL---DEIEEAKRKCQVLGVE 163 (181)
T ss_pred Ee-hh---hhCHHHHHHHHHHhcC-CCCEEEEEcCCCcH---HHHHHHHHhhhhcCce
Confidence 87 44 2357788888999998 89998876433221 1233444444446763
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.7e-10 Score=96.33 Aligned_cols=131 Identities=18% Similarity=0.184 Sum_probs=89.3
Q ss_pred CEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecCC
Q 024311 37 KRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGD 115 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 115 (269)
++|||+|||+|.....++... ..+|++.|+++++++. .+.++... ....++.+...|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~-----a~~~~~~~-----------------gl~~~i~~~~~d 58 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEV-----GRERIRAL-----------------GLQGRIRIFYRD 58 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHH-----HHHHHHhc-----------------CCCcceEEEecc
Confidence 489999999999887776643 3589999999998843 34443221 012344554444
Q ss_pred CCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEe
Q 024311 116 WEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLT 195 (269)
Q Consensus 116 w~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlas 195 (269)
.... ...++||+|++.
T Consensus 59 ~~~~----------------------------------------------------------------~~~~~fD~I~~~ 74 (224)
T smart00828 59 SAKD----------------------------------------------------------------PFPDTYDLVFGF 74 (224)
T ss_pred cccC----------------------------------------------------------------CCCCCCCEeehH
Confidence 3211 012479999999
Q ss_pred ccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc--cc--------CcchHHHHHHhhhcCceeEEE
Q 024311 196 EIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV--GF--------NNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 196 D~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f--g~--------~~~~~~F~~~~~~~g~~~~~~ 254 (269)
.++++....+.+++.+.++|+ |+|.+++....... .. -.+..++.+.+++.||-..+.
T Consensus 75 ~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 75 EVIHHIKDKMDLFSNISRHLK-DGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred HHHHhCCCHHHHHHHHHHHcC-CCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEe
Confidence 999999999999999999999 89998886431100 00 124577888999999754443
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2e-10 Score=102.93 Aligned_cols=105 Identities=27% Similarity=0.287 Sum_probs=77.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||+|||+|..++.++..|. +|+++|+++++++.+ +.+.... ...++++++.+
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a-----~~~~~~~-----------------g~~~~v~~~~~ 100 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRA-----KQAAEAK-----------------GVSDNMQFIHC 100 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHH-----HHHHHhc-----------------CCccceEEEEc
Confidence 567999999999999998888876 899999999998543 3333211 01234555444
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|..+.+ ....++||+|++
T Consensus 101 d~~~l~--------------------------------------------------------------~~~~~~fD~V~~ 118 (255)
T PRK11036 101 AAQDIA--------------------------------------------------------------QHLETPVDLILF 118 (255)
T ss_pred CHHHHh--------------------------------------------------------------hhcCCCCCEEEe
Confidence 433211 012458999999
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
..++++......+++.+.++|+ |+|++.+.
T Consensus 119 ~~vl~~~~~~~~~l~~~~~~Lk-pgG~l~i~ 148 (255)
T PRK11036 119 HAVLEWVADPKSVLQTLWSVLR-PGGALSLM 148 (255)
T ss_pred hhHHHhhCCHHHHHHHHHHHcC-CCeEEEEE
Confidence 9999998888999999999999 89988765
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.7e-10 Score=99.16 Aligned_cols=107 Identities=25% Similarity=0.331 Sum_probs=76.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
++.+|||+|||+|...+.++.. +. .+|++.|++++|++.+ +.+..... . ....++++.
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A-----~~r~~~~~---~------------~~~~~i~~~ 132 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVA-----ASRQELKA---K------------SCYKNIEWI 132 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHH-----HHHhhhhh---h------------ccCCCeEEE
Confidence 5789999999999988776654 43 4899999999999553 21111000 0 011345565
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|.+..+ ..++.||+|
T Consensus 133 ~~d~~~lp---------------------------------------------------------------~~~~sfD~V 149 (261)
T PLN02233 133 EGDATDLP---------------------------------------------------------------FDDCYFDAI 149 (261)
T ss_pred EcccccCC---------------------------------------------------------------CCCCCEeEE
Confidence 55544321 134589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
+++.++.+..+...+++.+.++|+ |+|++++.
T Consensus 150 ~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~ 181 (261)
T PLN02233 150 TMGYGLRNVVDRLKAMQEMYRVLK-PGSRVSIL 181 (261)
T ss_pred EEecccccCCCHHHHHHHHHHHcC-cCcEEEEE
Confidence 999999999999999999999999 88988775
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.1e-10 Score=98.73 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=96.6
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhcc
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR 92 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~ 92 (269)
--|+.|+.|... ...++|||||||+|+.||++|.. ...+|++.++++++.+++ ..|+.+|-
T Consensus 31 ~DaiLL~~~~~~--------~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A-~~nv~ln~--------- 92 (248)
T COG4123 31 TDAILLAAFAPV--------PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMA-QRNVALNP--------- 92 (248)
T ss_pred cHHHHHHhhccc--------ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHH-HHHHHhCc---------
Confidence 346777777632 23789999999999999998876 546899999999988553 45555443
Q ss_pred CCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 024311 93 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG 172 (269)
Q Consensus 93 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~g 172 (269)
+..++++++.|..+....
T Consensus 93 ------------l~~ri~v~~~Di~~~~~~-------------------------------------------------- 110 (248)
T COG4123 93 ------------LEERIQVIEADIKEFLKA-------------------------------------------------- 110 (248)
T ss_pred ------------chhceeEehhhHHHhhhc--------------------------------------------------
Confidence 234666766665543210
Q ss_pred chhhhhhcccccCCCCccEEEEeccccccC------------------CHHHHHHHHHHhcCCCCeEEEEEEcccccccC
Q 024311 173 SRAWERASEADQGEGGYDVILLTEIPYSVT------------------SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFN 234 (269)
Q Consensus 173 s~~W~~~~~~~~~~~~fDlIlasD~iY~~~------------------~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~ 234 (269)
....+||+|++.=..|... .++.+++.-.++|+ |+|.+++..+.-
T Consensus 111 -----------~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk-~~G~l~~V~r~e----- 173 (248)
T COG4123 111 -----------LVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLK-PGGRLAFVHRPE----- 173 (248)
T ss_pred -----------ccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHcc-CCCEEEEEecHH-----
Confidence 1223788888854444332 25567888888998 889998887653
Q ss_pred cchHHHHHHhhhcCce
Q 024311 235 NAARHLRSLVDEEGIF 250 (269)
Q Consensus 235 ~~~~~F~~~~~~~g~~ 250 (269)
...+|++.|++.++.
T Consensus 174 -rl~ei~~~l~~~~~~ 188 (248)
T COG4123 174 -RLAEIIELLKSYNLE 188 (248)
T ss_pred -HHHHHHHHHHhcCCC
Confidence 467899999997764
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-09 Score=100.55 Aligned_cols=130 Identities=15% Similarity=0.098 Sum_probs=89.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||||||+|..++.++. .+..+|+++|.++++++.+ +.|... .++++..
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A-----~~k~~~---------------------~~i~~i~ 166 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKA-----KQKEPL---------------------KECKIIE 166 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHH-----HHhhhc---------------------cCCeEEe
Confidence 567999999999998877665 3446899999999988432 222210 1233433
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|.++.+ ...+.||+|+
T Consensus 167 gD~e~lp---------------------------------------------------------------~~~~sFDvVI 183 (340)
T PLN02490 167 GDAEDLP---------------------------------------------------------------FPTDYADRYV 183 (340)
T ss_pred ccHHhCC---------------------------------------------------------------CCCCceeEEE
Confidence 4433211 1345899999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcc-------cccc----cCcchHHHHHHhhhcCceeEEE
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK-------NYVG----FNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~-------~~fg----~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
++.++++....+.+++.+.++|+ |+|++++.... +++. .....+++.+.+++.||-..++
T Consensus 184 s~~~L~~~~d~~~~L~e~~rvLk-PGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 184 SAGSIEYWPDPQRGIKEAYRVLK-IGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred EcChhhhCCCHHHHHHHHHHhcC-CCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence 99999988888999999999999 88987765321 1110 0125688899999999865544
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-09 Score=97.66 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=87.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
-++.+|||+|||+|.+...++. .+. +|++.|+++.+++.+ +.+... ..++.+.
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~-~v~giD~s~~~~~~a-----~~~~~~--------------------~~~i~~~ 104 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGA-HVHGVDICEKMVNIA-----KLRNSD--------------------KNKIEFE 104 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCC-EEEEEECCHHHHHHH-----HHHcCc--------------------CCceEEE
Confidence 3678999999999998876665 344 899999999988432 222100 1245554
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|....+ ...++||+|
T Consensus 105 ~~D~~~~~---------------------------------------------------------------~~~~~FD~V 121 (263)
T PTZ00098 105 ANDILKKD---------------------------------------------------------------FPENTFDMI 121 (263)
T ss_pred ECCcccCC---------------------------------------------------------------CCCCCeEEE
Confidence 44433211 134589999
Q ss_pred EEeccccccC--CHHHHHHHHHHhcCCCCeEEEEEEccccc---------------c-cCcchHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKNYV---------------G-FNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~k~~~f---------------g-~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
++.+++++.. ....+++.+.++|+ |+|++++..-.... + .-....++.+.+++.||-.++.
T Consensus 122 ~s~~~l~h~~~~d~~~~l~~i~r~Lk-PGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~ 200 (263)
T PTZ00098 122 YSRDAILHLSYADKKKLFEKCYKWLK-PNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVA 200 (263)
T ss_pred EEhhhHHhCCHHHHHHHHHHHHHHcC-CCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeE
Confidence 9999987754 67889999999999 89998876311000 0 0124578888899999854443
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.2e-10 Score=98.77 Aligned_cols=99 Identities=25% Similarity=0.324 Sum_probs=73.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+.+|||+|||+|..+..++..+. +|+++|+++++++.+ +.+. ..+.+..+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a-----~~~~-----------------------~~~~~~~~ 92 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQA-----RQKD-----------------------AADHYLAG 92 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHH-----HhhC-----------------------CCCCEEEc
Confidence 567999999999988877777775 899999999988432 2111 01123334
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|.+..+ ....+||+|++
T Consensus 93 d~~~~~---------------------------------------------------------------~~~~~fD~V~s 109 (251)
T PRK10258 93 DIESLP---------------------------------------------------------------LATATFDLAWS 109 (251)
T ss_pred CcccCc---------------------------------------------------------------CCCCcEEEEEE
Confidence 433211 13458999999
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+.++.+......++..+.++|+ |+|.+++++
T Consensus 110 ~~~l~~~~d~~~~l~~~~~~Lk-~gG~l~~~~ 140 (251)
T PRK10258 110 NLAVQWCGNLSTALRELYRVVR-PGGVVAFTT 140 (251)
T ss_pred CchhhhcCCHHHHHHHHHHHcC-CCeEEEEEe
Confidence 9999998899999999999998 899998874
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.3e-10 Score=96.01 Aligned_cols=109 Identities=16% Similarity=0.232 Sum_probs=78.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
..+.+|||||||+|..|+.++..++.+|++.|.++++++. ++.|+..+. . .++.++.
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~-----a~~Nl~~~~-----------------~-~~v~~~~ 108 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQ-----LIKNLATLK-----------------A-GNARVVN 108 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHH-----HHHHHHHhC-----------------C-CcEEEEE
Confidence 3578999999999999997666677799999999998843 445554331 1 1455555
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|+... + . ....+||+|+
T Consensus 109 ~D~~~~--------------------------------------------------l----------~--~~~~~fDlV~ 126 (199)
T PRK10909 109 TNALSF--------------------------------------------------L----------A--QPGTPHNVVF 126 (199)
T ss_pred chHHHH--------------------------------------------------H----------h--hcCCCceEEE
Confidence 553221 0 0 0123699998
Q ss_pred EeccccccCCHHHHHHHHHHh--cCCCCeEEEEEEccc
Q 024311 194 LTEIPYSVTSLKKLYLLIKKC--LRPPYGVVYLATKKN 229 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~--L~~p~g~~~va~k~~ 229 (269)
. |..|.....+.+++.|... |. |++++||.+.+.
T Consensus 127 ~-DPPy~~g~~~~~l~~l~~~~~l~-~~~iv~ve~~~~ 162 (199)
T PRK10909 127 V-DPPFRKGLLEETINLLEDNGWLA-DEALIYVESEVE 162 (199)
T ss_pred E-CCCCCCChHHHHHHHHHHCCCcC-CCcEEEEEecCC
Confidence 7 9999998898999988873 66 899999987653
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.6e-09 Score=93.71 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=74.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.+.+|||+|||+|..+..++.. + ..+|++.|+++.+++. .+.|.... ..+++++.
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~------------------~~~~v~~~ 101 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSV-----GRQKVKDA------------------GLHNVELV 101 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHH-----HHHHHHhc------------------CCCceEEE
Confidence 5789999999999998877653 3 3489999999998844 33333211 01244554
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|....+ ...++||+|
T Consensus 102 ~~d~~~~~---------------------------------------------------------------~~~~~fD~V 118 (231)
T TIGR02752 102 HGNAMELP---------------------------------------------------------------FDDNSFDYV 118 (231)
T ss_pred EechhcCC---------------------------------------------------------------CCCCCccEE
Confidence 44433211 124589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
+++.++.+.+....+++.+.++|+ |+|++++.
T Consensus 119 ~~~~~l~~~~~~~~~l~~~~~~Lk-~gG~l~~~ 150 (231)
T TIGR02752 119 TIGFGLRNVPDYMQVLREMYRVVK-PGGKVVCL 150 (231)
T ss_pred EEecccccCCCHHHHHHHHHHHcC-cCeEEEEE
Confidence 999998888888999999999998 89988765
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.1e-10 Score=95.37 Aligned_cols=38 Identities=26% Similarity=0.456 Sum_probs=34.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||+|||+|..++.++..|. +|++.|+++.+++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~ 67 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIAS 67 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence 567999999999999999998886 89999999998854
|
Part of a tellurite-reducing operon tehA and tehB |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.4e-09 Score=102.96 Aligned_cols=130 Identities=21% Similarity=0.262 Sum_probs=91.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||+|||+|..++.++.....+|++.|++++++..+ +.|... ...++.|..+
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A-----~~~~~~-------------------~~~~v~~~~~ 321 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFA-----LERAIG-------------------RKCSVEFEVA 321 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHH-----HHHhhc-------------------CCCceEEEEc
Confidence 5779999999999988777654333899999999988543 223210 1134566666
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|+...+ ...++||+|++
T Consensus 322 d~~~~~---------------------------------------------------------------~~~~~fD~I~s 338 (475)
T PLN02336 322 DCTKKT---------------------------------------------------------------YPDNSFDVIYS 338 (475)
T ss_pred CcccCC---------------------------------------------------------------CCCCCEEEEEE
Confidence 654321 12358999999
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccc-----------c---c-cCcchHHHHHHhhhcCceeE
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-----------V---G-FNNAARHLRSLVDEEGIFGA 252 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~-----------f---g-~~~~~~~F~~~~~~~g~~~~ 252 (269)
.+++++....+.+++.+.++|+ |+|.+++...... + | .-.....+.+.+++.||-..
T Consensus 339 ~~~l~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~aGF~~i 410 (475)
T PLN02336 339 RDTILHIQDKPALFRSFFKWLK-PGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQMLKDAGFDDV 410 (475)
T ss_pred CCcccccCCHHHHHHHHHHHcC-CCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHHHHCCCeee
Confidence 9999999999999999999999 8999888732110 0 0 01245677888888997544
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-09 Score=90.60 Aligned_cols=119 Identities=17% Similarity=0.171 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
++.+|||+|||+|..++.+++.++ .+|++.|.++++++. ++.|...+. . .++++..
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~-----a~~n~~~~~-----------------~-~~i~~~~ 87 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRL-----IKENRQRFG-----------------C-GNIDIIP 87 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHH-----HHHHHHHhC-----------------C-CCeEEEe
Confidence 678999999999999998887543 589999999998843 445553320 0 1344433
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|... ....+||+|+
T Consensus 88 ~d~~~-----------------------------------------------------------------~~~~~~D~v~ 102 (187)
T PRK08287 88 GEAPI-----------------------------------------------------------------ELPGKADAIF 102 (187)
T ss_pred cCchh-----------------------------------------------------------------hcCcCCCEEE
Confidence 33110 0124799999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCce
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~ 250 (269)
.+-.. ..++.+++.+.++|+ |+|++++.... .+...++...+++.|+.
T Consensus 103 ~~~~~---~~~~~~l~~~~~~Lk-~gG~lv~~~~~-----~~~~~~~~~~l~~~g~~ 150 (187)
T PRK08287 103 IGGSG---GNLTAIIDWSLAHLH-PGGRLVLTFIL-----LENLHSALAHLEKCGVS 150 (187)
T ss_pred ECCCc---cCHHHHHHHHHHhcC-CCeEEEEEEec-----HhhHHHHHHHHHHCCCC
Confidence 86432 346778888889998 89998775422 13567888999999974
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-09 Score=93.27 Aligned_cols=105 Identities=26% Similarity=0.344 Sum_probs=76.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC--CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga--~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.+.+|||+|||+|..++.++..+. .+|+++|+++.+++ ..+.|...+ ....++.+.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~-----~a~~~~~~~-----------------~~~~~~~~~ 108 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLA-----VGREKLRDL-----------------GLSGNVEFV 108 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHH-----HHHHhhccc-----------------ccccCeEEE
Confidence 578999999999999988777663 69999999998884 344443211 011234444
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|....+ ...+.||+|
T Consensus 109 ~~d~~~~~---------------------------------------------------------------~~~~~~D~I 125 (239)
T PRK00216 109 QGDAEALP---------------------------------------------------------------FPDNSFDAV 125 (239)
T ss_pred ecccccCC---------------------------------------------------------------CCCCCccEE
Confidence 44433211 123589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
+.+-++.+....+.+++.+.++|+ |+|++++.
T Consensus 126 ~~~~~l~~~~~~~~~l~~~~~~L~-~gG~li~~ 157 (239)
T PRK00216 126 TIAFGLRNVPDIDKALREMYRVLK-PGGRLVIL 157 (239)
T ss_pred EEecccccCCCHHHHHHHHHHhcc-CCcEEEEE
Confidence 999999999999999999999998 88887765
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-10 Score=92.66 Aligned_cols=64 Identities=16% Similarity=0.373 Sum_probs=50.0
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccc-----------cccC--c-----chHHHHHHhhh
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-----------VGFN--N-----AARHLRSLVDE 246 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~-----------fg~~--~-----~~~~F~~~~~~ 246 (269)
..++||+|++++++++......+++.|.++|+ |+|.+++....++ +... + +..++..++++
T Consensus 75 ~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 153 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEHLPDPEEFLKELSRLLK-PGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQ 153 (161)
T ss_dssp HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEE-EEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHH
T ss_pred cccchhhHhhHHHHhhcccHHHHHHHHHHhcC-CCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHH
Confidence 34699999999999999999999999999999 8999999865432 1110 0 34677777888
Q ss_pred cCc
Q 024311 247 EGI 249 (269)
Q Consensus 247 ~g~ 249 (269)
.|+
T Consensus 154 ~G~ 156 (161)
T PF13489_consen 154 AGF 156 (161)
T ss_dssp TTE
T ss_pred CCC
Confidence 886
|
... |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8e-10 Score=100.88 Aligned_cols=39 Identities=23% Similarity=0.512 Sum_probs=34.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.++.+|||+|||+|..++.++..|. +|++.|+++.+++.
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~ 157 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLEN 157 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence 3566999999999999999998886 89999999999843
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.9e-09 Score=91.40 Aligned_cols=126 Identities=24% Similarity=0.348 Sum_probs=85.8
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccC
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ 93 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~ 93 (269)
.......+|+.+.........++.+|||+|||+|..+..++..++ +|+++|.++.++. ..+.|+..+.
T Consensus 24 ~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~-----~a~~~~~~~~------ 91 (224)
T TIGR01983 24 KMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIE-----VAKLHAKKDP------ 91 (224)
T ss_pred HhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHH-----HHHHHHHHcC------
Confidence 333444567766553222235688999999999999888887776 6999999999873 3444443210
Q ss_pred CCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 024311 94 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS 173 (269)
Q Consensus 94 ~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs 173 (269)
. .++++...|..+.+
T Consensus 92 -----------~-~~~~~~~~d~~~~~----------------------------------------------------- 106 (224)
T TIGR01983 92 -----------L-LKIEYRCTSVEDLA----------------------------------------------------- 106 (224)
T ss_pred -----------C-CceEEEeCCHHHhh-----------------------------------------------------
Confidence 0 02333333322110
Q ss_pred hhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 174 RAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 174 ~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
. ....+||+|+++.++++......+++.+.++|+ ++|.++++.
T Consensus 107 -------~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~i~~ 149 (224)
T TIGR01983 107 -------E--KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLK-PGGILFFST 149 (224)
T ss_pred -------c--CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcC-CCcEEEEEe
Confidence 0 123589999999999999999999999999998 889888765
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-09 Score=95.88 Aligned_cols=100 Identities=21% Similarity=0.286 Sum_probs=72.6
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.++.+|||+|||+|.....++.. +..+|+++|+++.+++.+ +.+. +++.+.
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a-----~~~~-----------------------~~~~~~ 81 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEA-----RSRL-----------------------PDCQFV 81 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHH-----HHhC-----------------------CCCeEE
Confidence 36789999999999998776654 345899999999988432 2221 123333
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|-.. | ....+||+|
T Consensus 82 ~~d~~~---------------------------------------------------------~-------~~~~~fD~v 97 (258)
T PRK01683 82 EADIAS---------------------------------------------------------W-------QPPQALDLI 97 (258)
T ss_pred ECchhc---------------------------------------------------------c-------CCCCCccEE
Confidence 332111 1 022489999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+++.++++......+++.+.++|+ |+|.+.+..
T Consensus 98 ~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~~~~~~ 130 (258)
T PRK01683 98 FANASLQWLPDHLELFPRLVSLLA-PGGVLAVQM 130 (258)
T ss_pred EEccChhhCCCHHHHHHHHHHhcC-CCcEEEEEC
Confidence 999999988889999999999999 899888753
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-09 Score=102.06 Aligned_cols=126 Identities=21% Similarity=0.292 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCC-Ceeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLA-PSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 112 (269)
.+|++|||||||||..++.++..|+.+|++.|.++.+++. .+.|+..|. +. .+++++
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~-----a~~N~~~Ng-----------------l~~~~v~~i 276 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDI-----ARQNVELNK-----------------LDLSKAEFV 276 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHH-----HHHHHHHcC-----------------CCCCcEEEE
Confidence 3689999999999999998888888899999999999954 344544431 11 246666
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.. .. + .....+||+|
T Consensus 277 ~~D~~~~l---~~--------------------------------------------------~------~~~~~~fDlV 297 (396)
T PRK15128 277 RDDVFKLL---RT--------------------------------------------------Y------RDRGEKFDVI 297 (396)
T ss_pred EccHHHHH---HH--------------------------------------------------H------HhcCCCCCEE
Confidence 66643210 00 0 0123579999
Q ss_pred EEeccccccCC----------HHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhh
Q 024311 193 LLTEIPYSVTS----------LKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDE 246 (269)
Q Consensus 193 lasD~iY~~~~----------~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~ 246 (269)
|. |..|.... +..++....++|+ |+|.++.++..... +.++|.+.+.+
T Consensus 298 il-DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk-~gG~lv~~scs~~~----~~~~f~~~v~~ 355 (396)
T PRK15128 298 VM-DPPKFVENKSQLMGACRGYKDINMLAIQLLN-PGGILLTFSCSGLM----TSDLFQKIIAD 355 (396)
T ss_pred EE-CCCCCCCChHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeCCCcC----CHHHHHHHHHH
Confidence 96 88886654 3444555567888 89999988776654 46778877764
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.2e-09 Score=98.68 Aligned_cols=46 Identities=28% Similarity=0.407 Sum_probs=35.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 36 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
+.+|||||||+|..|+.++..+ ..+|+++|.++.+++.+ ..|+..|
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A-~~N~~~n 275 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASS-RLNVETN 275 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHH-HHHHHHc
Confidence 4599999999999999988765 35899999999998543 3444433
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.1e-09 Score=94.85 Aligned_cols=139 Identities=22% Similarity=0.287 Sum_probs=96.4
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.++|++|||+|||.|.-+.-++..||+.|+++|.++..+.+ -.+...+.. ....+.++
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~Q---F~~i~~~lg-------------------~~~~~~~l 170 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQ---FEAIKHFLG-------------------QDPPVFEL 170 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHH---HHHHHHHhC-------------------CCccEEEc
Confidence 67999999999999999999999999999999987754422 112111110 01112221
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+-.++ ++ ..+.||+|
T Consensus 171 plgvE~---------------------------------------------------Lp-------------~~~~FDtV 186 (315)
T PF08003_consen 171 PLGVED---------------------------------------------------LP-------------NLGAFDTV 186 (315)
T ss_pred Ccchhh---------------------------------------------------cc-------------ccCCcCEE
Confidence 111111 11 24589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE-------------cccccccC-----cchHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT-------------KKNYVGFN-----NAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~-------------k~~~fg~~-----~~~~~F~~~~~~~g~~~~~~ 254 (269)
++-=|+|+..+.-..+..++..|+ ++|.+++-+ +.+|=... .+.......++..||-.+++
T Consensus 187 F~MGVLYHrr~Pl~~L~~Lk~~L~-~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~ 265 (315)
T PF08003_consen 187 FSMGVLYHRRSPLDHLKQLKDSLR-PGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRC 265 (315)
T ss_pred EEeeehhccCCHHHHHHHHHHhhC-CCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEE
Confidence 999999999999999999999998 777666432 22332222 37788899999999988888
Q ss_pred Eeee
Q 024311 255 IKEM 258 (269)
Q Consensus 255 ~~~~ 258 (269)
+...
T Consensus 266 v~~~ 269 (315)
T PF08003_consen 266 VDVS 269 (315)
T ss_pred ecCc
Confidence 7644
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.9e-09 Score=92.77 Aligned_cols=102 Identities=24% Similarity=0.342 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.++++|||||||+|..+..++..++ .+|+++|.++++++.+ ..+. .+++.+.
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~-----~~~~----------------------~~~~~~~ 85 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQA-----KTKL----------------------SENVQFI 85 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHH-----HHhc----------------------CCCCeEE
Confidence 4568999999999998877776654 4689999999887432 1111 0133444
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|....+ ...++||+|
T Consensus 86 ~~d~~~~~---------------------------------------------------------------~~~~~fD~v 102 (240)
T TIGR02072 86 CGDAEKLP---------------------------------------------------------------LEDSSFDLI 102 (240)
T ss_pred ecchhhCC---------------------------------------------------------------CCCCceeEE
Confidence 34433211 123589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+++.++++......++..+.++|+ |+|.++++.
T Consensus 103 i~~~~l~~~~~~~~~l~~~~~~L~-~~G~l~~~~ 135 (240)
T TIGR02072 103 VSNLALQWCDDLSQALSELARVLK-PGGLLAFST 135 (240)
T ss_pred EEhhhhhhccCHHHHHHHHHHHcC-CCcEEEEEe
Confidence 999999999899999999999999 899988864
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.9e-09 Score=92.45 Aligned_cols=126 Identities=20% Similarity=0.145 Sum_probs=84.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||+|||+|...+.++.. +..+|++.|+++++++. ++.|...+. . +++.++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~-----a~~~~~~~~-----------------~-~~v~~~~ 96 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGK-----ALKKIEEEG-----------------L-TNLRLLC 96 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHH-----HHHHHHHcC-----------------C-CCEEEEe
Confidence 5679999999999998776654 33589999999999844 344443220 1 3466666
Q ss_pred CCC-CCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 114 GDW-EELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 114 ~dw-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
+|+ +..+. ......||+|
T Consensus 97 ~d~~~~l~~-------------------------------------------------------------~~~~~~~D~V 115 (202)
T PRK00121 97 GDAVEVLLD-------------------------------------------------------------MFPDGSLDRI 115 (202)
T ss_pred cCHHHHHHH-------------------------------------------------------------HcCccccceE
Confidence 665 32110 0124579999
Q ss_pred EEeccccccC--------CHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCce
Q 024311 193 LLTEIPYSVT--------SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 193 lasD~iY~~~--------~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~ 250 (269)
+..-...... ..+.+++.+.++|+ |+|++++++.... -....++.+++.|+.
T Consensus 116 ~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~~~~~~-----~~~~~~~~~~~~g~~ 175 (202)
T PRK00121 116 YLNFPDPWPKKRHHKRRLVQPEFLALYARKLK-PGGEIHFATDWEG-----YAEYMLEVLSAEGGF 175 (202)
T ss_pred EEECCCCCCCccccccccCCHHHHHHHHHHcC-CCCEEEEEcCCHH-----HHHHHHHHHHhCccc
Confidence 8753321111 25778999999999 8999998865432 356788888898863
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.5e-10 Score=86.67 Aligned_cols=106 Identities=29% Similarity=0.455 Sum_probs=73.0
Q ss_pred CCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecCC
Q 024311 36 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGD 115 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 115 (269)
|.+|||+|||+|...+.++..++.++++.|+++..++. .+.|+..+. ...+++++.+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~-----a~~~~~~~~-----------------~~~~~~~~~~D 58 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVEL-----ARRNLPRNG-----------------LDDRVEVIVGD 58 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHH-----HHHHCHHCT-----------------TTTTEEEEESH
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHH-----HHHHHHHcc-----------------CCceEEEEECc
Confidence 56999999999999999998886699999999998844 344443321 22346666665
Q ss_pred CCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEe
Q 024311 116 WEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLT 195 (269)
Q Consensus 116 w~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlas 195 (269)
+.+... .....+||+|++
T Consensus 59 ~~~~~~-------------------------------------------------------------~~~~~~~D~Iv~- 76 (117)
T PF13659_consen 59 ARDLPE-------------------------------------------------------------PLPDGKFDLIVT- 76 (117)
T ss_dssp HHHHHH-------------------------------------------------------------TCTTT-EEEEEE-
T ss_pred hhhchh-------------------------------------------------------------hccCceeEEEEE-
Confidence 433210 024568999998
Q ss_pred ccccccC---------CHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 196 EIPYSVT---------SLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 196 D~iY~~~---------~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+..|... .+..+++.+.++|+ |+|++++.+
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~-~gG~~~~~~ 115 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLK-PGGVLVFIT 115 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcC-CCeEEEEEe
Confidence 6666643 35678888889998 889888764
|
... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.5e-09 Score=95.18 Aligned_cols=104 Identities=22% Similarity=0.337 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
+|.+|||+|||||..++.++.. +. .+|++.|++++||+.. +...... ...+|++.
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a-----~~k~~~~------------------~~~~i~~v 103 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVA-----RKKLKRE------------------GLQNIEFV 103 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHH-----HHHHHHT------------------T--SEEEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHH-----HHHHHhh------------------CCCCeeEE
Confidence 5779999999999999877653 32 4899999999999543 2222110 01257777
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|-+++| ..+++||.|
T Consensus 104 ~~da~~lp---------------------------------------------------------------~~d~sfD~v 120 (233)
T PF01209_consen 104 QGDAEDLP---------------------------------------------------------------FPDNSFDAV 120 (233)
T ss_dssp E-BTTB-----------------------------------------------------------------S-TT-EEEE
T ss_pred EcCHHHhc---------------------------------------------------------------CCCCceeEE
Confidence 66655543 245699999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
..+=.+.+..+.+..++.+.++|+ |+|++.|.
T Consensus 121 ~~~fglrn~~d~~~~l~E~~RVLk-PGG~l~il 152 (233)
T PF01209_consen 121 TCSFGLRNFPDRERALREMYRVLK-PGGRLVIL 152 (233)
T ss_dssp EEES-GGG-SSHHHHHHHHHHHEE-EEEEEEEE
T ss_pred EHHhhHHhhCCHHHHHHHHHHHcC-CCeEEEEe
Confidence 999999999999999999999999 88887664
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-09 Score=96.52 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=34.7
Q ss_pred CCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 187 GGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 187 ~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
.+||+|+++.++++....+.+++.+.+.|+ |+|.+++.
T Consensus 88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~l~~~ 125 (255)
T PRK14103 88 PDTDVVVSNAALQWVPEHADLLVRWVDELA-PGSWIAVQ 125 (255)
T ss_pred CCceEEEEehhhhhCCCHHHHHHHHHHhCC-CCcEEEEE
Confidence 489999999999999899999999999999 89988875
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-08 Score=88.30 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=42.9
Q ss_pred eeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 12 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 12 vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
-++.+..+.+.+.+... -.+++|||+|||+|..++.++.. +..+|+++|.++.+++.
T Consensus 69 p~~~~~~l~~~~l~~~~-----~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~ 126 (251)
T TIGR03534 69 PRPDTEELVEAALERLK-----KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAV 126 (251)
T ss_pred CCCChHHHHHHHHHhcc-----cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 34566677777666531 24569999999999999888765 33489999999999844
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.6e-09 Score=95.23 Aligned_cols=104 Identities=25% Similarity=0.424 Sum_probs=80.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
+|.+|||+|||||-..+.++. .|..+|++.|+++.||+..... . ... .. .+++|..
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k-----~-------~~~----------~~-~~i~fv~ 107 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREK-----L-------KKK----------GV-QNVEFVV 107 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHH-----h-------hcc----------Cc-cceEEEE
Confidence 689999999999999987665 4456999999999998432111 0 000 01 1277777
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|-+++| ..+.+||+|.
T Consensus 108 ~dAe~LP---------------------------------------------------------------f~D~sFD~vt 124 (238)
T COG2226 108 GDAENLP---------------------------------------------------------------FPDNSFDAVT 124 (238)
T ss_pred echhhCC---------------------------------------------------------------CCCCccCEEE
Confidence 7766654 2567999999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
.+=.+-+..+.+..++.+.|.|+ |+|++++.
T Consensus 125 ~~fglrnv~d~~~aL~E~~RVlK-pgG~~~vl 155 (238)
T COG2226 125 ISFGLRNVTDIDKALKEMYRVLK-PGGRLLVL 155 (238)
T ss_pred eeehhhcCCCHHHHHHHHHHhhc-CCeEEEEE
Confidence 99999999999999999999999 89987775
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.2e-09 Score=89.73 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=41.7
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
.+.|++||||+||+|..|+.|+..|+++|++.|.++..+ ..++.|+..+
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~-----~~~~~N~~~~ 95 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKAN-----QTLKENLALL 95 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHH-----HHHHHHHHHh
Confidence 357899999999999999999999999999999999988 4455565443
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-08 Score=93.04 Aligned_cols=39 Identities=33% Similarity=0.462 Sum_probs=35.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.++.+|||+|||+|..++.++..|. +|++.|+++.+++.
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~ 181 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAE 181 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence 4678999999999999999998876 89999999999954
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-08 Score=87.20 Aligned_cols=128 Identities=18% Similarity=0.239 Sum_probs=84.3
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH 110 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 110 (269)
..++.+|||+|||+|..++.+++. + ..+|++.|.++++++ ..+.|+..+. +..++.
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~-----~a~~n~~~~g-----------------~~~~v~ 95 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAIN-----LTRRNAEKFG-----------------VLNNIV 95 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHH-----HHHHHHHHhC-----------------CCCCeE
Confidence 347889999999999999988764 3 358999999999884 3455553321 112344
Q ss_pred eecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 024311 111 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 190 (269)
Q Consensus 111 ~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fD 190 (269)
+..+|..+.. .....+||
T Consensus 96 ~~~~d~~~~l--------------------------------------------------------------~~~~~~~D 113 (198)
T PRK00377 96 LIKGEAPEIL--------------------------------------------------------------FTINEKFD 113 (198)
T ss_pred EEEechhhhH--------------------------------------------------------------hhcCCCCC
Confidence 4444322100 01234799
Q ss_pred EEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEE
Q 024311 191 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 191 lIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
.|+..- ....+..+++.+.++|+ |+|++++..... +...+-...+++.|+ ..++
T Consensus 114 ~V~~~~---~~~~~~~~l~~~~~~Lk-pgG~lv~~~~~~-----~~~~~~~~~l~~~g~-~~~~ 167 (198)
T PRK00377 114 RIFIGG---GSEKLKEIISASWEIIK-KGGRIVIDAILL-----ETVNNALSALENIGF-NLEI 167 (198)
T ss_pred EEEECC---CcccHHHHHHHHHHHcC-CCcEEEEEeecH-----HHHHHHHHHHHHcCC-CeEE
Confidence 999732 23456778888888998 889887754432 246778888888897 5554
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.2e-09 Score=106.55 Aligned_cols=133 Identities=23% Similarity=0.291 Sum_probs=90.7
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCC-Ceeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLA-PSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 112 (269)
.+|++|||||||||..++.++..|+++|+..|+++.+++. .+.|+..|. +. .+++++
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~-----a~~N~~~ng-----------------~~~~~v~~i 594 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEW-----AERNFALNG-----------------LSGRQHRLI 594 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHH-----HHHHHHHhC-----------------CCccceEEE
Confidence 3689999999999999999999999889999999999954 445554431 11 245665
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+ |-. ....+||+|
T Consensus 595 ~~D~~~---------------------------------------------------------~l~-----~~~~~fDlI 612 (702)
T PRK11783 595 QADCLA---------------------------------------------------------WLK-----EAREQFDLI 612 (702)
T ss_pred EccHHH---------------------------------------------------------HHH-----HcCCCcCEE
Confidence 555321 100 013479999
Q ss_pred EEecccccc------------CCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEEEeeec
Q 024311 193 LLTEIPYSV------------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMT 259 (269)
Q Consensus 193 lasD~iY~~------------~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~~~~~~ 259 (269)
|. |..|.. ..+..++..+.++|+ |+|++++++..+.+. .-...+++.|+ ..+++....
T Consensus 613 il-DPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~-~gG~l~~~~~~~~~~------~~~~~~~~~g~-~~~~i~~~~ 682 (702)
T PRK11783 613 FI-DPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLR-PGGTLYFSNNKRGFK------MDEEGLAKLGL-KAEEITAKT 682 (702)
T ss_pred EE-CCCCCCCCCccchhhhHHHHHHHHHHHHHHHcC-CCCEEEEEeCCccCC------hhHHHHHhCCC-eEEEEecCC
Confidence 98 666643 235667888888898 899999887665442 22666777785 566655443
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-08 Score=89.65 Aligned_cols=56 Identities=23% Similarity=0.308 Sum_probs=39.5
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
.+..|++.+..... ....+.+|||||||+|..++.++.. +..+|+++|+++.+++.
T Consensus 69 ~Te~Lv~~~l~~~~---~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~ 125 (251)
T TIGR03704 69 RTEFLVDEAAALAR---PRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRC 125 (251)
T ss_pred cHHHHHHHHHHhhc---ccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 34566666654321 1113458999999999999887754 33589999999999843
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-08 Score=94.92 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=39.3
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
+..|++.+.... .++.+|||||||+|..++.++.. +..+|+++|+++++++.
T Consensus 238 TE~LVe~aL~~l------~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~ 290 (423)
T PRK14966 238 TEHLVEAVLARL------PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALET 290 (423)
T ss_pred HHHHHHHhhhcc------CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 346666665542 14569999999999999887753 45689999999999944
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.4e-08 Score=85.31 Aligned_cols=103 Identities=24% Similarity=0.367 Sum_probs=74.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC--CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga--~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
++.+|||+|||+|..+..++..++ .++++.|.++.++ ++.+.|... ..++++.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~-----~~~~~~~~~--------------------~~~i~~~ 93 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEML-----EVAKKKSEL--------------------PLNIEFI 93 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHH-----HHHHHHhcc--------------------CCCceEE
Confidence 688999999999999887776655 4899999999888 334433310 1234444
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.+ ...++||+|
T Consensus 94 ~~d~~~~~---------------------------------------------------------------~~~~~~D~i 110 (223)
T TIGR01934 94 QADAEALP---------------------------------------------------------------FEDNSFDAV 110 (223)
T ss_pred ecchhcCC---------------------------------------------------------------CCCCcEEEE
Confidence 33332210 123589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+.+..+.+......+++.+.++|+ |+|++++..
T Consensus 111 ~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~ 143 (223)
T TIGR01934 111 TIAFGLRNVTDIQKALREMYRVLK-PGGRLVILE 143 (223)
T ss_pred EEeeeeCCcccHHHHHHHHHHHcC-CCcEEEEEE
Confidence 999999888899999999999998 889887753
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-08 Score=85.66 Aligned_cols=60 Identities=32% Similarity=0.347 Sum_probs=46.9
Q ss_pred HHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 19 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 19 La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
+|.++..... ....+.|++|+|||||||.+|+.++.+||++|++.|.+++.++. .+.|..
T Consensus 30 ~Aa~il~~a~-~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei-----~r~N~~ 89 (198)
T COG2263 30 LAAYILWVAY-LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEI-----ARANAE 89 (198)
T ss_pred HHHHHHHHHH-HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHH-----HHHHHH
Confidence 4444443332 13467999999999999999999999999999999999999944 455553
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.4e-08 Score=76.74 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
++.+|||+|||+|..++.++.. +..+|+++|+++.+++.
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~ 58 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRL 58 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHH
Confidence 5679999999999999887765 34689999999998843
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.3e-08 Score=86.26 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=39.9
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHH
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 73 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~ 73 (269)
+..|++.+.... ...++.+|||+|||+|..++.++... ..+|+++|.++.+++.
T Consensus 93 te~l~~~~~~~~----~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~ 147 (275)
T PRK09328 93 TEELVEWALEAL----LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAV 147 (275)
T ss_pred cHHHHHHHHHhc----cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 445666665332 12357799999999999998887654 4589999999998843
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.9e-08 Score=93.05 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHH
Q 024311 36 GKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~ 73 (269)
..+|||||||+|..++.++..++ .+|+++|.++.+++.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~ 235 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALES 235 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 34899999999999998887654 589999999999844
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-08 Score=86.44 Aligned_cols=105 Identities=26% Similarity=0.354 Sum_probs=74.5
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcC--CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~g--a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
..+.+|||+|||+|.....++... ..+|+++|.++.+++.+ +.+... ...++.+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a-----~~~~~~-------------------~~~~~~~ 73 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALA-----KERAAG-------------------LGPNVEF 73 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHH-----HHHhhC-------------------CCCceEE
Confidence 367899999999999887766542 35899999999887432 222110 1123444
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
...|....+ ....+||+
T Consensus 74 ~~~d~~~~~---------------------------------------------------------------~~~~~~D~ 90 (241)
T PRK08317 74 VRGDADGLP---------------------------------------------------------------FPDGSFDA 90 (241)
T ss_pred EecccccCC---------------------------------------------------------------CCCCCceE
Confidence 444332211 12458999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
|++..++.+......+++.+.++|+ |+|.+++..
T Consensus 91 v~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~ 124 (241)
T PRK08317 91 VRSDRVLQHLEDPARALAEIARVLR-PGGRVVVLD 124 (241)
T ss_pred EEEechhhccCCHHHHHHHHHHHhc-CCcEEEEEe
Confidence 9999999998899999999999999 888887654
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-08 Score=93.30 Aligned_cols=114 Identities=25% Similarity=0.376 Sum_probs=73.8
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCC
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE 95 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~ 95 (269)
....+++.+.. ..-.|.+|||||||-|-+++.++.. |+ +|++...+++..+. ++..+...
T Consensus 48 ~~k~~~~~~~~----~l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~-----a~~~~~~~--------- 108 (273)
T PF02353_consen 48 ERKLDLLCEKL----GLKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEY-----ARERIREA--------- 108 (273)
T ss_dssp HHHHHHHHTTT----T--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHH-----HHHHHHCS---------
T ss_pred HHHHHHHHHHh----CCCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHH-----HHHHHHhc---------
Confidence 34444555543 2447889999999999999998876 87 89999999987743 22222110
Q ss_pred CCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchh
Q 024311 96 SSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRA 175 (269)
Q Consensus 96 ~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~ 175 (269)
.+...+++...|+.+
T Consensus 109 --------gl~~~v~v~~~D~~~--------------------------------------------------------- 123 (273)
T PF02353_consen 109 --------GLEDRVEVRLQDYRD--------------------------------------------------------- 123 (273)
T ss_dssp --------TSSSTEEEEES-GGG---------------------------------------------------------
T ss_pred --------CCCCceEEEEeeccc---------------------------------------------------------
Confidence 122344544444332
Q ss_pred hhhhcccccCCCCccEEEEecccccc--CCHHHHHHHHHHhcCCCCeEEEE
Q 024311 176 WERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYL 224 (269)
Q Consensus 176 W~~~~~~~~~~~~fDlIlasD~iY~~--~~~~~L~~~l~~~L~~p~g~~~v 224 (269)
.+.+||-|++-+++-+. ..++.+++.+.++|+ |+|++++
T Consensus 124 ---------~~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk-pgG~~~l 164 (273)
T PF02353_consen 124 ---------LPGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLK-PGGRLVL 164 (273)
T ss_dssp ------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE-TTEEEEE
T ss_pred ---------cCCCCCEEEEEechhhcChhHHHHHHHHHHHhcC-CCcEEEE
Confidence 12399999999999987 678999999999998 8999875
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=89.04 Aligned_cols=40 Identities=38% Similarity=0.641 Sum_probs=34.8
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
..++.+|||+|||+|..+..++..++ +|+++|++++++..
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~ 92 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQM 92 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence 34688999999999999988887776 89999999999844
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.7e-08 Score=85.86 Aligned_cols=39 Identities=10% Similarity=-0.002 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
++.+|||+|||+|.....++.. +..+|++.|+++++++.
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~ 82 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEK 82 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence 5779999999999998877664 44589999999999854
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-08 Score=86.75 Aligned_cols=120 Identities=22% Similarity=0.348 Sum_probs=72.8
Q ss_pred CEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecCCC
Q 024311 37 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDW 116 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw 116 (269)
.++||+|||.|.+...+|... .+++++|.++..++.+ +..+ . -.++|++...|.
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC-d~LlavDis~~Al~~A-----r~Rl-------~-------------~~~~V~~~~~dv 98 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC-DRLLAVDISPRALARA-----RERL-------A-------------GLPHVEWIQADV 98 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE-EEEEEEES-HHHHHHH-----HHHT-------T-------------T-SSEEEEES-T
T ss_pred ceeEecCCCccHHHHHHHHhh-CceEEEeCCHHHHHHH-----HHhc-------C-------------CCCCeEEEECcC
Confidence 489999999999997777664 4899999999888442 1111 0 114566554442
Q ss_pred CCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEec
Q 024311 117 EELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTE 196 (269)
Q Consensus 117 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD 196 (269)
... ...++||+|+.|+
T Consensus 99 p~~----------------------------------------------------------------~P~~~FDLIV~SE 114 (201)
T PF05401_consen 99 PEF----------------------------------------------------------------WPEGRFDLIVLSE 114 (201)
T ss_dssp TT-------------------------------------------------------------------SS-EEEEEEES
T ss_pred CCC----------------------------------------------------------------CCCCCeeEEEEeh
Confidence 110 2456999999999
Q ss_pred cccccCCHHHH---HHHHHHhcCCCCeEEEEEEccc----ccccCcchHHHHHHhhhc
Q 024311 197 IPYSVTSLKKL---YLLIKKCLRPPYGVVYLATKKN----YVGFNNAARHLRSLVDEE 247 (269)
Q Consensus 197 ~iY~~~~~~~L---~~~l~~~L~~p~g~~~va~k~~----~fg~~~~~~~F~~~~~~~ 247 (269)
++|.....+.| ++.+...|+ |+|.+++++-+. ..|-.-|.+.-.+.+.+.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~-pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALA-PGGHLVFGHARDANCRRWGHAAGAETVLEMLQEH 171 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEE-EEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHH
T ss_pred HhHcCCCHHHHHHHHHHHHHHhC-CCCEEEEEEecCCcccccCcccchHHHHHHHHHH
Confidence 99999876654 455555677 999999986542 233333566666666654
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.4e-10 Score=86.45 Aligned_cols=35 Identities=14% Similarity=0.411 Sum_probs=24.3
Q ss_pred CCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEE
Q 024311 187 GGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVV 222 (269)
Q Consensus 187 ~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~ 222 (269)
++||+|+++.++++.+..+.+++.+.++|+ |+|++
T Consensus 65 ~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~-pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHLEDIEAVLRNIYRLLK-PGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS--S-HHHHHHHHTTT-T-SS-EE
T ss_pred cccceehhhhhHhhhhhHHHHHHHHHHHcC-CCCCC
Confidence 599999999999999999999999999999 88874
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.5e-09 Score=90.96 Aligned_cols=112 Identities=27% Similarity=0.420 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
+.|.+||||-||+|.+|+.|...||++|++.|.++..+ ..++.|+.... ...+++.+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~-----~~i~~N~~~l~-----------------~~~~~~v~~ 98 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAI-----KIIKKNLEKLG-----------------LEDKIRVIK 98 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHH-----HHHHHHHHHHT------------------GGGEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHH-----HHHHHHHHHhC-----------------CCcceeeec
Confidence 68999999999999999999999999999999999988 66777776431 111233322
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
.|.... +.+. .....+||+|+
T Consensus 99 ~d~~~~--------------------------------------------------------l~~~---~~~~~~fDiIf 119 (183)
T PF03602_consen 99 GDAFKF--------------------------------------------------------LLKL---AKKGEKFDIIF 119 (183)
T ss_dssp SSHHHH--------------------------------------------------------HHHH---HHCTS-EEEEE
T ss_pred cCHHHH--------------------------------------------------------HHhh---cccCCCceEEE
Confidence 221110 0000 01356999999
Q ss_pred EeccccccCCH-HHHHHHHH--HhcCCCCeEEEEEEcc
Q 024311 194 LTEIPYSVTSL-KKLYLLIK--KCLRPPYGVVYLATKK 228 (269)
Q Consensus 194 asD~iY~~~~~-~~L~~~l~--~~L~~p~g~~~va~k~ 228 (269)
. |..|..... +.+++.|. .+|+ ++|++++-+.+
T Consensus 120 l-DPPY~~~~~~~~~l~~l~~~~~l~-~~~~ii~E~~~ 155 (183)
T PF03602_consen 120 L-DPPYAKGLYYEELLELLAENNLLN-EDGLIIIEHSK 155 (183)
T ss_dssp E---STTSCHHHHHHHHHHHHTTSEE-EEEEEEEEEET
T ss_pred E-CCCcccchHHHHHHHHHHHCCCCC-CCEEEEEEecC
Confidence 8 999999984 88888887 4777 88888887644
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3e-08 Score=88.60 Aligned_cols=106 Identities=18% Similarity=0.218 Sum_probs=72.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHH---cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACL---KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~---~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
.+.+|||||||+|...+.++. ....+|++.|.++.+++.+ +.|+.... ...++++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A-----~~~~~~~~-----------------~~~~v~~ 113 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERC-----RRHIDAYK-----------------APTPVDV 113 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHH-----HHHHHhcC-----------------CCCCeEE
Confidence 678999999999998876665 2334899999999999543 34432210 1124555
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|..+. ....+|+
T Consensus 114 ~~~d~~~~-----------------------------------------------------------------~~~~~D~ 128 (247)
T PRK15451 114 IEGDIRDI-----------------------------------------------------------------AIENASM 128 (247)
T ss_pred EeCChhhC-----------------------------------------------------------------CCCCCCE
Confidence 55543321 1135899
Q ss_pred EEEeccccccC--CHHHHHHHHHHhcCCCCeEEEEEEcc
Q 024311 192 ILLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKK 228 (269)
Q Consensus 192 IlasD~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~k~ 228 (269)
|+++-+++..+ ....+++.+.+.|+ |+|.++++.+.
T Consensus 129 vv~~~~l~~l~~~~~~~~l~~i~~~Lk-pGG~l~l~e~~ 166 (247)
T PRK15451 129 VVLNFTLQFLEPSERQALLDKIYQGLN-PGGALVLSEKF 166 (247)
T ss_pred EehhhHHHhCCHHHHHHHHHHHHHhcC-CCCEEEEEEec
Confidence 99887776543 34578999999998 99999988643
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-07 Score=86.32 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=92.6
Q ss_pred ceeeccHH-HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 10 LKCWESSI-DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 10 ~~vW~as~-~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
+++|.--. -||.-|..-.. .-....+.+|||||||+|.....++.. + ..+|++.|+++.+++.+ .. ....
T Consensus 107 yR~w~p~rSKlaa~i~~g~~-~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dL-----l~-~ak~ 179 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVA-NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDL-----TN-MAKK 179 (293)
T ss_pred eeeeCCcccHHHHHHHCCcc-eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHH-----HH-Hhhh
Confidence 89998543 23433322211 012347789999999999988777654 3 24899999998776322 11 1000
Q ss_pred hhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccc
Q 024311 87 RERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRR 166 (269)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 166 (269)
.+++.++..|...... +
T Consensus 180 -------------------r~NI~~I~~Da~~p~~------------------------y-------------------- 196 (293)
T PTZ00146 180 -------------------RPNIVPIIEDARYPQK------------------------Y-------------------- 196 (293)
T ss_pred -------------------cCCCEEEECCccChhh------------------------h--------------------
Confidence 0233333333221000 0
Q ss_pred cccccCchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHH-H---HH
Q 024311 167 SRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARH-L---RS 242 (269)
Q Consensus 167 ~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~-F---~~ 242 (269)
......||+|++ |+ ..++....++..++++|+ |+|.++|..+.+....+...++ | ++
T Consensus 197 ----------------~~~~~~vDvV~~-Dv-a~pdq~~il~~na~r~LK-pGG~~vI~ika~~id~g~~pe~~f~~ev~ 257 (293)
T PTZ00146 197 ----------------RMLVPMVDVIFA-DV-AQPDQARIVALNAQYFLK-NGGHFIISIKANCIDSTAKPEVVFASEVQ 257 (293)
T ss_pred ----------------hcccCCCCEEEE-eC-CCcchHHHHHHHHHHhcc-CCCEEEEEEeccccccCCCHHHHHHHHHH
Confidence 012237999988 55 357777778888999999 8999999877654433333333 3 46
Q ss_pred HhhhcCceeEEE
Q 024311 243 LVDEEGIFGAHL 254 (269)
Q Consensus 243 ~~~~~g~~~~~~ 254 (269)
.+++.||-..++
T Consensus 258 ~L~~~GF~~~e~ 269 (293)
T PTZ00146 258 KLKKEGLKPKEQ 269 (293)
T ss_pred HHHHcCCceEEE
Confidence 688888754444
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.1e-07 Score=81.39 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=42.7
Q ss_pred cCceeeccHH-HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHH
Q 024311 8 GFLKCWESSI-DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIR 72 (269)
Q Consensus 8 ~G~~vW~as~-~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~ 72 (269)
+++.+|.... .++.+|....+ .-...+|.+|||+|||+|..++.++.. +..+|++.|.++++++
T Consensus 45 ~~~~~~~~~r~~~~~~ll~~~~-~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~ 110 (226)
T PRK04266 45 VEYREWNPRRSKLAAAILKGLK-NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMR 110 (226)
T ss_pred cEEEEECCCccchHHHHHhhHh-hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHH
Confidence 4567887533 22333333210 012336789999999999999887765 3348999999999884
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.1e-07 Score=88.53 Aligned_cols=38 Identities=37% Similarity=0.341 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.|.+|||.|||+|...+.++..++ +|++.|.++.+++.
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~ 219 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAG 219 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHH
Confidence 577999999999998888888876 89999999999843
|
This family is found exclusively in the Archaea. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.8e-08 Score=87.37 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=32.0
Q ss_pred CEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHH
Q 024311 37 KRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~ 73 (269)
.+|||+|||+|..++.++...+ .+|+++|+++++++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~ 153 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAV 153 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 6999999999999998887543 589999999999844
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.6e-09 Score=79.82 Aligned_cols=35 Identities=29% Similarity=0.413 Sum_probs=25.6
Q ss_pred EEEEcCCCCHHHHHHHHc---CC-CeEEEEeCCHHHHHH
Q 024311 39 VLELSCGYGLPGIFACLK---GA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 39 VLELGcGtGl~gl~aa~~---ga-~~Vv~tD~~~~vl~~ 73 (269)
|||||||+|.....++.. +. .++++.|+++++++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~ 39 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLEL 39 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHH
Confidence 799999999888776654 32 699999999999844
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.4e-08 Score=85.41 Aligned_cols=40 Identities=23% Similarity=0.439 Sum_probs=33.5
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.++..++||||||.|.-++.+|.+|. .|++.|.++..++.
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~ 67 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEK 67 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHH
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence 35778999999999999999999999 89999999988843
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-07 Score=81.73 Aligned_cols=138 Identities=15% Similarity=0.173 Sum_probs=86.6
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHc-CC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH 110 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~-ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 110 (269)
..++.+|||||||+|..+..++.. +. .+|++.|+++ +. + .+++.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~----------~-----------------------~~~v~ 94 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD----------P-----------------------IVGVD 94 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc----------C-----------------------CCCcE
Confidence 346889999999999998776654 33 4899999987 11 0 02456
Q ss_pred eecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 024311 111 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 190 (269)
Q Consensus 111 ~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fD 190 (269)
++.+|..+.+.+... . ......+||
T Consensus 95 ~i~~D~~~~~~~~~i-~------------------------------------------------------~~~~~~~~D 119 (209)
T PRK11188 95 FLQGDFRDELVLKAL-L------------------------------------------------------ERVGDSKVQ 119 (209)
T ss_pred EEecCCCChHHHHHH-H------------------------------------------------------HHhCCCCCC
Confidence 777777654311100 0 001345899
Q ss_pred EEEEeccccccCC-----------HHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEEEeeec
Q 024311 191 VILLTEIPYSVTS-----------LKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMT 259 (269)
Q Consensus 191 lIlasD~iY~~~~-----------~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~~~~~~ 259 (269)
+|++.-+.+.... +..+++.+.++|+ |+|.+++..- .++...+|++.++. .|..+++.....
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lk-pGG~~vi~~~-----~~~~~~~~l~~l~~-~f~~v~~~Kp~s 192 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLA-PGGSFVVKVF-----QGEGFDEYLREIRS-LFTKVKVRKPDS 192 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEEe-----cCcCHHHHHHHHHh-CceEEEEECCcc
Confidence 9998554443221 2457788888998 8999888642 23456777766553 467777766555
Q ss_pred ----CcceEEE
Q 024311 260 ----DRDIWKF 266 (269)
Q Consensus 260 ----~~~i~~~ 266 (269)
.+|++-+
T Consensus 193 sr~~s~e~~~~ 203 (209)
T PRK11188 193 SRARSREVYIV 203 (209)
T ss_pred ccccCceeEEE
Confidence 2455544
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.4e-07 Score=83.64 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=32.2
Q ss_pred EEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHH
Q 024311 38 RVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 38 ~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~ 73 (269)
+|||||||+|..++.++...+ .+|+++|+|++.++.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~ 149 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALAL 149 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHH
Confidence 899999999999999888765 489999999999944
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-07 Score=93.22 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~ 73 (269)
++.+|||+|||+|..++.++. .+..+|+++|+++.+++.
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~ 177 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEV 177 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHH
Confidence 356899999999999987665 344589999999999854
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.4e-08 Score=86.22 Aligned_cols=105 Identities=17% Similarity=0.150 Sum_probs=72.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc---CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK---GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~---ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
.+.+|||+|||+|...+.++.. ...+|++.|+++.+++. .+.++.... ...++++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~-----a~~~~~~~~-----------------~~~~v~~ 110 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVER-----CRQHIAAYH-----------------SEIPVEI 110 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHH-----HHHHHHhcC-----------------CCCCeEE
Confidence 6779999999999988777653 23489999999999854 334432110 1124555
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|+... ....+|+
T Consensus 111 ~~~d~~~~-----------------------------------------------------------------~~~~~d~ 125 (239)
T TIGR00740 111 LCNDIRHV-----------------------------------------------------------------EIKNASM 125 (239)
T ss_pred EECChhhC-----------------------------------------------------------------CCCCCCE
Confidence 55554332 1125899
Q ss_pred EEEeccccccC--CHHHHHHHHHHhcCCCCeEEEEEEc
Q 024311 192 ILLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATK 227 (269)
Q Consensus 192 IlasD~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~k 227 (269)
|+++.++.+.. ....+++.+.+.|+ |+|.++++..
T Consensus 126 v~~~~~l~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~d~ 162 (239)
T TIGR00740 126 VILNFTLQFLPPEDRIALLTKIYEGLN-PNGVLVLSEK 162 (239)
T ss_pred EeeecchhhCCHHHHHHHHHHHHHhcC-CCeEEEEeec
Confidence 99888877653 34678999999998 8999988743
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-07 Score=86.34 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||+|||+|..++.++... ..+|+++|+++.+++.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~ 160 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAV 160 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 35699999999999999888753 3489999999999844
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.6e-08 Score=91.21 Aligned_cols=39 Identities=33% Similarity=0.498 Sum_probs=33.0
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
-.+.+|||+|||+|..++.++.. |. +|+++|+++++++.
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~ 205 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKL 205 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 36789999999999999877764 55 89999999998844
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.9e-07 Score=84.27 Aligned_cols=46 Identities=33% Similarity=0.659 Sum_probs=36.4
Q ss_pred CCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 36 GKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
+.+|||||||.|..|+.+++..+ .+|+++|.|...++.+ +.|+..|
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~a-r~Nl~~N 205 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESA-RKNLAAN 205 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHH-HHhHHHc
Confidence 33999999999999999988764 6899999999988543 3444433
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-07 Score=82.40 Aligned_cols=39 Identities=31% Similarity=0.510 Sum_probs=34.3
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.++.+|||+|||+|..+..++..+. +|+++|.++.+++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~ 100 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEE 100 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHH
Confidence 4678999999999999988888877 69999999999854
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.9e-08 Score=87.18 Aligned_cols=102 Identities=24% Similarity=0.356 Sum_probs=75.6
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
+-.|++|||+|||-|.+.+.||.. |+ +|++++++++.... .+.-+... .+..++++
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~-----~~~r~~~~-----------------gl~~~v~v 126 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAY-----AEKRIAAR-----------------GLEDNVEV 126 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHH-----HHHHHHHc-----------------CCCcccEE
Confidence 457999999999999999998876 56 99999999988733 33222110 12234555
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
.-.||.+. .++||-
T Consensus 127 ~l~d~rd~------------------------------------------------------------------~e~fDr 140 (283)
T COG2230 127 RLQDYRDF------------------------------------------------------------------EEPFDR 140 (283)
T ss_pred Eecccccc------------------------------------------------------------------ccccce
Confidence 55555542 235999
Q ss_pred EEEeccccccCC--HHHHHHHHHHhcCCCCeEEEE
Q 024311 192 ILLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYL 224 (269)
Q Consensus 192 IlasD~iY~~~~--~~~L~~~l~~~L~~p~g~~~v 224 (269)
|++-+.+-+.-. ++.+++.++++|+ |+|++++
T Consensus 141 IvSvgmfEhvg~~~~~~ff~~~~~~L~-~~G~~ll 174 (283)
T COG2230 141 IVSVGMFEHVGKENYDDFFKKVYALLK-PGGRMLL 174 (283)
T ss_pred eeehhhHHHhCcccHHHHHHHHHhhcC-CCceEEE
Confidence 999999988766 9999999999998 7887665
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.9e-08 Score=85.83 Aligned_cols=39 Identities=21% Similarity=0.138 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||||||||.....++.....+|++.|.+++|++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~ 89 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKM 89 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHH
Confidence 367999999999998877776632489999999999854
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=2e-07 Score=81.53 Aligned_cols=55 Identities=20% Similarity=0.166 Sum_probs=39.1
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCC--CeEEEEeCCHHHHHH
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRC 73 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga--~~Vv~tD~~~~vl~~ 73 (269)
++..+..++.... ...++.+|||+|||+|..++.++.... .+|+..|+++++++.
T Consensus 61 ~~p~~~~~~~~~l----~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~ 117 (215)
T TIGR00080 61 SAPHMVAMMTELL----ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEK 117 (215)
T ss_pred chHHHHHHHHHHh----CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence 3334444554443 134678999999999999988776533 359999999998843
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.6e-07 Score=85.43 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=31.7
Q ss_pred CEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHH
Q 024311 37 KRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 73 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~ 73 (269)
.+|||+|||+|..++.++... ..+|+++|+++.+++.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~ 172 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAV 172 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 689999999999998887653 3589999999999943
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=80.59 Aligned_cols=59 Identities=22% Similarity=0.210 Sum_probs=43.1
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCC-EEEEEcCCCCHHHHHHHHcCCC-eEEEEeCCHHHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGK-RVLELSCGYGLPGIFACLKGAG-TVHFQDLSAETIRC 73 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~-~VLELGcGtGl~gl~aa~~ga~-~Vv~tD~~~~vl~~ 73 (269)
++-..+++||..++...+ .-+.. +|||||||.|.+=.-++..|.. +.+++||++..+.+
T Consensus 46 ~ae~riv~wl~d~~~~~r-v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L 106 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISR-VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL 106 (227)
T ss_pred cHHHHHHHHHHhhhhhhh-hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH
Confidence 345678889988764111 12333 9999999999887777777653 49999999998854
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-07 Score=69.56 Aligned_cols=102 Identities=28% Similarity=0.387 Sum_probs=70.9
Q ss_pred EEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecCCCC
Q 024311 38 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWE 117 (269)
Q Consensus 38 ~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~ 117 (269)
+|+|+|||+|..+..++.....++++.|.++..++.+ +.+.... ....+++...|+.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~-----~~~~~~~------------------~~~~~~~~~~~~~ 57 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELA-----RKAAAAL------------------LADNVEVLKGDAE 57 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHH-----HHHHhcc------------------cccceEEEEcChh
Confidence 5899999999988777765567999999999887443 1111000 0123444444433
Q ss_pred CcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEecc
Q 024311 118 ELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEI 197 (269)
Q Consensus 118 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~ 197 (269)
... + ....+||+|++..+
T Consensus 58 ~~~-------------------------------------------------------~-------~~~~~~d~i~~~~~ 75 (107)
T cd02440 58 ELP-------------------------------------------------------P-------EADESFDVIISDPP 75 (107)
T ss_pred hhc-------------------------------------------------------c-------ccCCceEEEEEccc
Confidence 211 0 12458999999999
Q ss_pred ccc-cCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 198 PYS-VTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 198 iY~-~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
.+. ......+++.+.++|+ ++|.+++.
T Consensus 76 ~~~~~~~~~~~l~~~~~~l~-~~g~~~~~ 103 (107)
T cd02440 76 LHHLVEDLARFLEEARRLLK-PGGVLVLT 103 (107)
T ss_pred eeehhhHHHHHHHHHHHHcC-CCCEEEEE
Confidence 888 8888899999999998 88888776
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.6e-08 Score=92.31 Aligned_cols=41 Identities=32% Similarity=0.533 Sum_probs=36.9
Q ss_pred CCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 30 GQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 30 ~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
.+..|++|.|||+|||||++++.+|+.||++|++.|-+. +.
T Consensus 55 n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia 95 (346)
T KOG1499|consen 55 NKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IA 95 (346)
T ss_pred chhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HH
Confidence 456899999999999999999999999999999999854 44
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.4e-08 Score=83.93 Aligned_cols=63 Identities=19% Similarity=0.049 Sum_probs=50.3
Q ss_pred CCccCceeec---cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 5 KPDGFLKCWE---SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 5 ~ye~G~~vW~---as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+|..|-.-|. .+-.|++++.... .-.+.+||++|||.|.-++.+|..|. +|++.|+++..++.
T Consensus 6 ry~~~~~~w~~~~p~~~l~~~~~~l~-----~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~ 71 (213)
T TIGR03840 6 RWQEGQIGFHQSEVNPLLVKHWPALG-----LPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQ 71 (213)
T ss_pred HHhcCCCCCccCCCCHHHHHHHHhhC-----CCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHH
Confidence 5777777884 5567777776531 12567999999999999999999998 89999999998854
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.3e-07 Score=78.98 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||+|||+|..+..++.. + ..+|++.|.++++++.
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~ 112 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIY 112 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHH
Confidence 5679999999999999766653 2 3489999999998854
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.5e-07 Score=84.10 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=31.6
Q ss_pred CCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 36 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
+.+|||+|||+|.+++.++.. +..+|++.|+++.+++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~ 103 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARI 103 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 458999999999999877664 24589999999998854
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.6e-07 Score=77.82 Aligned_cols=54 Identities=19% Similarity=0.077 Sum_probs=39.3
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
++-.+..++.... ...++.+|||+|||+|..+..++..+. +|+..|+++++++.
T Consensus 62 ~~p~~~~~l~~~l----~~~~~~~VLeiG~GsG~~t~~la~~~~-~v~~vd~~~~~~~~ 115 (212)
T PRK00312 62 SQPYMVARMTELL----ELKPGDRVLEIGTGSGYQAAVLAHLVR-RVFSVERIKTLQWE 115 (212)
T ss_pred CcHHHHHHHHHhc----CCCCCCEEEEECCCccHHHHHHHHHhC-EEEEEeCCHHHHHH
Confidence 4444555555432 133678999999999999887777654 89999999998843
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=4e-07 Score=88.11 Aligned_cols=123 Identities=24% Similarity=0.293 Sum_probs=81.2
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCC
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPES 96 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~ 96 (269)
..|.+.+.+.. ....+.+|||||||+|..++.++..+. +|++.|.++++++. .+.|...+.
T Consensus 283 e~l~~~vl~~l----~~~~~~~VLDlgcGtG~~sl~la~~~~-~V~gvD~s~~al~~-----A~~n~~~~~--------- 343 (443)
T PRK13168 283 QKMVARALEWL----DPQPGDRVLDLFCGLGNFTLPLARQAA-EVVGVEGVEAMVER-----ARENARRNG--------- 343 (443)
T ss_pred HHHHHHHHHHh----cCCCCCEEEEEeccCCHHHHHHHHhCC-EEEEEeCCHHHHHH-----HHHHHHHcC---------
Confidence 44555555442 123568999999999999999888764 89999999999944 445554321
Q ss_pred CCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhh
Q 024311 97 SLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAW 176 (269)
Q Consensus 97 ~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W 176 (269)
. .+++|+.+|+.+... ..
T Consensus 344 --------~-~~v~~~~~d~~~~l~-----------------------------------------------~~------ 361 (443)
T PRK13168 344 --------L-DNVTFYHANLEEDFT-----------------------------------------------DQ------ 361 (443)
T ss_pred --------C-CceEEEEeChHHhhh-----------------------------------------------hh------
Confidence 1 247777777653200 00
Q ss_pred hhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc
Q 024311 177 ERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV 231 (269)
Q Consensus 177 ~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f 231 (269)
.....+||+|+. |..|.. ...+++.|.+ ++ |.+++||++....+
T Consensus 362 ------~~~~~~fD~Vi~-dPPr~g--~~~~~~~l~~-~~-~~~ivyvSCnp~tl 405 (443)
T PRK13168 362 ------PWALGGFDKVLL-DPPRAG--AAEVMQALAK-LG-PKRIVYVSCNPATL 405 (443)
T ss_pred ------hhhcCCCCEEEE-CcCCcC--hHHHHHHHHh-cC-CCeEEEEEeChHHh
Confidence 012347999987 888865 3455566666 35 88999999866543
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.9e-07 Score=84.44 Aligned_cols=41 Identities=22% Similarity=0.431 Sum_probs=33.2
Q ss_pred CCCccEEEEeccccccC--CHHHHHHHHHHhcCCCCeEEEEEEc
Q 024311 186 EGGYDVILLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATK 227 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~k 227 (269)
.++||+|++..++..-+ ....+++.+.++|+ |+|.++++..
T Consensus 201 ~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~-pGG~L~lg~~ 243 (264)
T smart00138 201 LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALK-PGGYLFLGHS 243 (264)
T ss_pred cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhC-CCeEEEEECc
Confidence 46899999998876553 45579999999998 9999998743
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.2e-07 Score=82.41 Aligned_cols=102 Identities=17% Similarity=0.095 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||+|||+|..++.+++..+ .++++.|. +.+++. .+.|+... .+..++++..
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~-----a~~~~~~~-----------------gl~~rv~~~~ 205 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDL-----VNENAAEK-----------------GVADRMRGIA 205 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHH-----HHHHHHhC-----------------CccceEEEEe
Confidence 557999999999999988877643 58999998 677743 34444321 0223455555
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|-.+. ....+|+|+
T Consensus 206 ~d~~~~-----------------------------------------------------------------~~~~~D~v~ 220 (306)
T TIGR02716 206 VDIYKE-----------------------------------------------------------------SYPEADAVL 220 (306)
T ss_pred cCccCC-----------------------------------------------------------------CCCCCCEEE
Confidence 542211 112469999
Q ss_pred EeccccccCC--HHHHHHHHHHhcCCCCeEEEEE
Q 024311 194 LTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 194 asD~iY~~~~--~~~L~~~l~~~L~~p~g~~~va 225 (269)
.+-++|+... ...+++.+.+.|+ |+|+++|.
T Consensus 221 ~~~~lh~~~~~~~~~il~~~~~~L~-pgG~l~i~ 253 (306)
T TIGR02716 221 FCRILYSANEQLSTIMCKKAFDAMR-SGGRLLIL 253 (306)
T ss_pred eEhhhhcCChHHHHHHHHHHHHhcC-CCCEEEEE
Confidence 9999986643 4578999999998 89999887
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.4e-07 Score=85.49 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
+|.+|||+|||+|..++.++..+. .+|++.|.++.+++ .++.|+.
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~-----~~~~n~~ 289 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLE-----RVRENLQ 289 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHH-----HHHHHHH
Confidence 678999999999999987776543 58999999999984 4555554
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-07 Score=91.11 Aligned_cols=127 Identities=21% Similarity=0.194 Sum_probs=83.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+++|||||||+|..+..++..+. +|++.|+++.+++. +...|- ..+++.++.+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~----a~~~~~---------------------~~~~i~~~~~ 90 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKK----NESING---------------------HYKNVKFMCA 90 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHH----HHHHhc---------------------cCCceEEEEe
Confidence 577999999999999988887754 89999999998842 221110 0124555555
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|..... + .....+||+|++
T Consensus 91 d~~~~~-------------------------------------------------~------------~~~~~~fD~I~~ 109 (475)
T PLN02336 91 DVTSPD-------------------------------------------------L------------NISDGSVDLIFS 109 (475)
T ss_pred cccccc-------------------------------------------------c------------CCCCCCEEEEeh
Confidence 443210 0 013458999999
Q ss_pred eccccccCC--HHHHHHHHHHhcCCCCeEEEEEEcccccc----------cCcchHHHHHHhhhcCc
Q 024311 195 TEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKNYVG----------FNNAARHLRSLVDEEGI 249 (269)
Q Consensus 195 sD~iY~~~~--~~~L~~~l~~~L~~p~g~~~va~k~~~fg----------~~~~~~~F~~~~~~~g~ 249 (269)
..++++... ...+++.+.++|+ |+|++++.-...... .-.....+.+.+.+.|+
T Consensus 110 ~~~l~~l~~~~~~~~l~~~~r~Lk-~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 175 (475)
T PLN02336 110 NWLLMYLSDKEVENLAERMVKWLK-VGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKVFKECHT 175 (475)
T ss_pred hhhHHhCCHHHHHHHHHHHHHhcC-CCeEEEEEeccCCCCCcccccCCCCeecChHHHHHHHHHhee
Confidence 999987654 5788999999998 899887742111000 00134566667777775
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.1e-07 Score=94.04 Aligned_cols=65 Identities=26% Similarity=0.303 Sum_probs=47.2
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
+-+..|++.|...+ ...+++++|||||||+|..++.++... ..+|+++|+++++++.+ ..|+.+|
T Consensus 100 peTE~lve~L~~~~---~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A-~~Na~~n 165 (1082)
T PLN02672 100 DWSFTFYEGLNRHP---DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVA-WINLYLN 165 (1082)
T ss_pred hhHHHHHHHHHhcc---cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHH-HHHHHHc
Confidence 44566777754432 223568899999999999999888754 36899999999999543 3555544
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.6e-07 Score=79.36 Aligned_cols=48 Identities=31% Similarity=0.458 Sum_probs=42.2
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.+.|.+||||-||+|.+|+.|+..||++|++.|.|...+ .-++.|+..
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~-----~~l~~N~~~ 88 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAV-----KILKENLKA 88 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHH-----HHHHHHHHH
Confidence 378999999999999999999999999999999999988 445666543
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.1e-07 Score=77.30 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~ 73 (269)
...+|||||||+|..++.++... ...|++.|.++++++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~ 55 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLA 55 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHH
Confidence 45699999999999998777653 3589999999999854
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.2e-07 Score=77.70 Aligned_cols=55 Identities=24% Similarity=0.266 Sum_probs=39.2
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CC-CeEEEEeCCHHHHHH
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga-~~Vv~tD~~~~vl~~ 73 (269)
++-.+..++.... ...++.+|||+|||+|..+..++.. +. .+|+..|+++++++.
T Consensus 60 ~~p~~~~~~~~~l----~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~ 116 (212)
T PRK13942 60 SAIHMVAIMCELL----DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEK 116 (212)
T ss_pred CcHHHHHHHHHHc----CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHH
Confidence 3444445554432 1336789999999999999776654 32 489999999999854
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.8e-07 Score=81.17 Aligned_cols=63 Identities=21% Similarity=0.092 Sum_probs=47.2
Q ss_pred CCccCceeec---cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 5 KPDGFLKCWE---SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 5 ~ye~G~~vW~---as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+|..|-..|. ..-.|++|+.... .-++.+||++|||.|.-.+.+|..|. +|++.|+++..++.
T Consensus 9 rw~~~~~~~~~~~p~~~L~~~~~~~~-----~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~ 74 (218)
T PRK13255 9 KWAENQIGFHQEEVNPLLQKYWPALA-----LPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQ 74 (218)
T ss_pred HHcCCCCCCCCCCCCHHHHHHHHhhC-----CCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHH
Confidence 4555655564 3445666665421 12567999999999999999999998 89999999998864
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-06 Score=74.79 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||+|||+|..++.++.. +..+|++.|.++++++.
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~ 79 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNL 79 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 5779999999999999887754 33589999999999844
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.6e-07 Score=76.23 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
.+.+|||+|||+|..+..++..+ .+|++.|+++.+++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~ 49 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAP 49 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHH
Confidence 56799999999999998888775 48999999999884
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.9e-07 Score=81.86 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC----CCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG----AGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g----a~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||+|||+|.....++... ..+|++.|+++.+++.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~ 127 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKY 127 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHH
Confidence 45689999999998886655431 1379999999999854
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.3e-06 Score=80.35 Aligned_cols=133 Identities=16% Similarity=0.155 Sum_probs=84.5
Q ss_pred CCCEEEEEcCCCC-HHHHHHH-Hc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 35 RGKRVLELSCGYG-LPGIFAC-LK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 35 ~~~~VLELGcGtG-l~gl~aa-~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
..++|+|+|||.| +.+++++ .. ...+++..|.++++++.+ +.++... ..+..+++|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~A-----r~~~~~~----------------~gL~~rV~F 181 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVA-----RRLVSSD----------------PDLSKRMFF 181 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHH-----HHHhhhc----------------cCccCCcEE
Confidence 7789999999955 6666544 33 335899999999988442 2322110 012346777
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|..+.. ...++||+
T Consensus 182 ~~~Da~~~~---------------------------------------------------------------~~l~~FDl 198 (296)
T PLN03075 182 HTADVMDVT---------------------------------------------------------------ESLKEYDV 198 (296)
T ss_pred EECchhhcc---------------------------------------------------------------cccCCcCE
Confidence 666543210 12358999
Q ss_pred EEEeccccc-cCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHH----HHhhhcCceeEEEEeeec
Q 024311 192 ILLTEIPYS-VTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLR----SLVDEEGIFGAHLIKEMT 259 (269)
Q Consensus 192 IlasD~iY~-~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~----~~~~~~g~~~~~~~~~~~ 259 (269)
|+..=++|. ......+++.+.+.|+ |+|.+++..- . |...|+ +...-+||-...++....
T Consensus 199 VF~~ALi~~dk~~k~~vL~~l~~~Lk-PGG~Lvlr~~---~----G~r~~LYp~v~~~~~~gf~~~~~~~P~~ 263 (296)
T PLN03075 199 VFLAALVGMDKEEKVKVIEHLGKHMA-PGALLMLRSA---H----GARAFLYPVVDPCDLRGFEVLSVFHPTD 263 (296)
T ss_pred EEEecccccccccHHHHHHHHHHhcC-CCcEEEEecc---c----chHhhcCCCCChhhCCCeEEEEEECCCC
Confidence 999855665 4789999999999999 9999988751 2 344443 223345775444444433
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.9e-07 Score=83.73 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=37.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
++.+|||||||+|..++.++..+. +|++.|.++.+++. .+.|+..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~-----A~~n~~~ 217 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIAC-----AKQSAAE 217 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHH-----HHHHHHH
Confidence 578999999999999999998874 89999999999843 4555543
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.2e-07 Score=91.78 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~ 73 (269)
.++.+|||+|||+|..+..++. .+..+|+++|+++.+++.
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~ 457 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDT 457 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 4688999999999988866554 444599999999999844
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.5e-07 Score=85.40 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=75.5
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
..+.+|||||||+|..++.++..+. +|++.|.++..++ ..+.|+..+. . .+++|+.
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~-~v~~vE~~~~av~-----~a~~N~~~~~-----------------~-~~~~~~~ 287 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDT-QLTGIEIESEAIA-----CAQQSAQMLG-----------------L-DNLSFAA 287 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCC-eEEEEECCHHHHH-----HHHHHHHHcC-----------------C-CcEEEEE
Confidence 3567999999999999999987764 8999999999984 4455554331 1 2466665
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+.. . ....+||+|+
T Consensus 288 ~d~~~~~---------------------------------------------------------~-----~~~~~~D~vi 305 (374)
T TIGR02085 288 LDSAKFA---------------------------------------------------------T-----AQMSAPELVL 305 (374)
T ss_pred CCHHHHH---------------------------------------------------------H-----hcCCCCCEEE
Confidence 5543210 0 0113599988
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV 231 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f 231 (269)
. |..|. -..+.+++.|.+ ++ |++++|+++....+
T Consensus 306 ~-DPPr~-G~~~~~l~~l~~-~~-p~~ivyvsc~p~Tl 339 (374)
T TIGR02085 306 V-NPPRR-GIGKELCDYLSQ-MA-PKFILYSSCNAQTM 339 (374)
T ss_pred E-CCCCC-CCcHHHHHHHHh-cC-CCeEEEEEeCHHHH
Confidence 8 88885 456677777765 45 88999999977544
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.8e-07 Score=79.79 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHH----cCC-CeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACL----KGA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~----~ga-~~Vv~tD~~~~vl~~ 73 (269)
++.+|||||||+|..+..++. .|. .+|+++|+++++++.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~ 103 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAF 103 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHH
Confidence 567999999999988766553 232 389999999999854
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.3e-06 Score=81.72 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
++.+|||+|||+|..++.++.. +..+|++.|.++..++ .++.|+.
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~-----~~~~n~~ 296 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLK-----LIEENAK 296 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHH-----HHHHHHH
Confidence 5779999999999999877754 3458999999999884 4455554
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.5e-06 Score=82.72 Aligned_cols=128 Identities=27% Similarity=0.332 Sum_probs=87.6
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
..+|++||+|-|=||..|+.||..||++|+..|.+...|+.+ .+|+.+|--. ...+.++
T Consensus 215 ~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a-~~N~~LNg~~--------------------~~~~~~i 273 (393)
T COG1092 215 LAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWA-RENAELNGLD--------------------GDRHRFI 273 (393)
T ss_pred hccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHH-HHHHHhcCCC--------------------ccceeee
Confidence 346999999999999999999999999999999999999653 3444444310 1233444
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|--+ |=+ .......+||+|
T Consensus 274 ~~Dvf~---------------------------------------------------------~l~--~~~~~g~~fDlI 294 (393)
T COG1092 274 VGDVFK---------------------------------------------------------WLR--KAERRGEKFDLI 294 (393)
T ss_pred hhhHHH---------------------------------------------------------HHH--HHHhcCCcccEE
Confidence 333111 100 111245699999
Q ss_pred EEeccc---------cc-cCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhh
Q 024311 193 LLTEIP---------YS-VTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDE 246 (269)
Q Consensus 193 lasD~i---------Y~-~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~ 246 (269)
|. |.. ++ ..++..|+....++|+ |+|.+++++..+.+ +.+.|++.+.+
T Consensus 295 il-DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~-pgG~l~~~s~~~~~----~~~~f~~~i~~ 352 (393)
T COG1092 295 IL-DPPSFARSKKQEFSAQRDYKDLNDLALRLLA-PGGTLVTSSCSRHF----SSDLFLEIIAR 352 (393)
T ss_pred EE-CCcccccCcccchhHHHHHHHHHHHHHHHcC-CCCEEEEEecCCcc----CHHHHHHHHHH
Confidence 97 321 11 2445667888888898 89999999888765 57788877765
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-06 Score=86.36 Aligned_cols=40 Identities=28% Similarity=0.214 Sum_probs=34.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~ 74 (269)
+.++||++|||+|.....+++.+. .+|++.|+++++++.+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~a 337 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELA 337 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHH
Confidence 567999999999998877777654 7999999999999654
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-06 Score=77.23 Aligned_cols=136 Identities=13% Similarity=0.190 Sum_probs=83.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHH--cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~--~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
+.++|||+|||+|..++.++. .+..+|+..|++++.++ -.+.|+..+. +..+++++
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~-----~A~~n~~~~g-----------------l~~~i~~~ 125 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYE-----VGLEFIKKAG-----------------VDHKINFI 125 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHH-----HHHHHHHHcC-----------------CCCcEEEE
Confidence 678999999999987766554 33569999999999884 3455554321 22456776
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.- ..+. .....++||+|
T Consensus 126 ~gda~~~L---~~l~------------------------------------------------------~~~~~~~fD~V 148 (234)
T PLN02781 126 QSDALSAL---DQLL------------------------------------------------------NNDPKPEFDFA 148 (234)
T ss_pred EccHHHHH---HHHH------------------------------------------------------hCCCCCCCCEE
Confidence 66654320 0000 00124589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccc---------------cCcchHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG---------------FNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg---------------~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
+. |.- ...+..+++.+.++|+ |+|++++-.- .+.| ....+++|.+.+.+.--+.+.+
T Consensus 149 fi-Da~--k~~y~~~~~~~~~ll~-~GG~ii~dn~-l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~ 220 (234)
T PLN02781 149 FV-DAD--KPNYVHFHEQLLKLVK-VGGIIAFDNT-LWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQ 220 (234)
T ss_pred EE-CCC--HHHHHHHHHHHHHhcC-CCeEEEEEcC-CcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEE
Confidence 87 543 2456677888888898 8888765321 1112 0123568888877665444444
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.6e-06 Score=81.07 Aligned_cols=122 Identities=20% Similarity=0.245 Sum_probs=79.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+.+|||||||+|..++.++... .+|++.|.++++++ ..+.|+..+. ..+++|+.+
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~-----~a~~n~~~~~------------------~~nv~~~~~ 347 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVE-----KAQQNAELNG------------------IANVEFLAG 347 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHH-----HHHHHHHHhC------------------CCceEEEeC
Confidence 45799999999999999988765 48999999999984 3445554331 135777777
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|+.+.. .. + ......||+|+.
T Consensus 348 d~~~~l--~~---------------------------------------------------~------~~~~~~~D~vi~ 368 (431)
T TIGR00479 348 TLETVL--PK---------------------------------------------------Q------PWAGQIPDVLLL 368 (431)
T ss_pred CHHHHH--HH---------------------------------------------------H------HhcCCCCCEEEE
Confidence 654310 00 0 012346999986
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCc
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI 249 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~ 249 (269)
|..+. ...+.+++.+.+ ++ |++++|+++... +...=+..+.+.|+
T Consensus 369 -dPPr~-G~~~~~l~~l~~-l~-~~~ivyvsc~p~------tlard~~~l~~~gy 413 (431)
T TIGR00479 369 -DPPRK-GCAAEVLRTIIE-LK-PERIVYVSCNPA------TLARDLEFLCKEGY 413 (431)
T ss_pred -CcCCC-CCCHHHHHHHHh-cC-CCEEEEEcCCHH------HHHHHHHHHHHCCe
Confidence 66664 335667677775 56 788999987643 23334455556664
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.4e-06 Score=72.39 Aligned_cols=38 Identities=21% Similarity=0.206 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
.+.+|||+|||+|.....++......+++.|+++++++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~ 50 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVL 50 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHH
Confidence 46799999999998887766544447899999998774
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.7e-06 Score=72.71 Aligned_cols=37 Identities=30% Similarity=0.249 Sum_probs=29.6
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAE 69 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~ 69 (269)
..+|.+|||+|||+|.....++.. +..+|++.|+++.
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~ 68 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM 68 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence 357889999999999888766553 3457999999984
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.7e-05 Score=68.03 Aligned_cols=121 Identities=17% Similarity=0.174 Sum_probs=85.8
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
..+|.+++|+|||||-.++.+++.++ .+|++.|.+++.+ ..+++|..... -+++..
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~-----~~~~~N~~~fg------------------~~n~~v 88 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEAL-----ELIERNAARFG------------------VDNLEV 88 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHH-----HHHHHHHHHhC------------------CCcEEE
Confidence 34788999999999999998887655 5899999999998 56677775431 135555
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
.+++--+. |+ ....||.
T Consensus 89 v~g~Ap~~--------------------------------------------------L~-------------~~~~~da 105 (187)
T COG2242 89 VEGDAPEA--------------------------------------------------LP-------------DLPSPDA 105 (187)
T ss_pred EeccchHh--------------------------------------------------hc-------------CCCCCCE
Confidence 55542211 10 1127888
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCc
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI 249 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~ 249 (269)
|+-.=. ...+.+++.+-..|+ |+|++.+-+-.. .+...-++.+++.|+
T Consensus 106 iFIGGg----~~i~~ile~~~~~l~-~ggrlV~naitl-----E~~~~a~~~~~~~g~ 153 (187)
T COG2242 106 IFIGGG----GNIEEILEAAWERLK-PGGRLVANAITL-----ETLAKALEALEQLGG 153 (187)
T ss_pred EEECCC----CCHHHHHHHHHHHcC-cCCeEEEEeecH-----HHHHHHHHHHHHcCC
Confidence 874333 568889999999998 889888765443 356677788888887
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-06 Score=78.10 Aligned_cols=57 Identities=21% Similarity=0.132 Sum_probs=49.0
Q ss_pred eeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 11 KCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 11 ~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
-+..++.-|.+.+... ...++|++|||+|||||..+..++..|+++|++.|.++.+|
T Consensus 55 ~vsr~~~kL~~~l~~~----~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l 111 (228)
T TIGR00478 55 FVSRGGEKLKEALEEF----NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQL 111 (228)
T ss_pred hhhhhHHHHHHHHHhc----CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 4577788888887765 24579999999999999999999999999999999999877
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-05 Score=68.86 Aligned_cols=68 Identities=21% Similarity=0.355 Sum_probs=46.2
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHH-cC-CCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~-~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
+-+..|.+.|++....-. ....+-+||+|||+|..+-++++ .+ ....++||+||..++ +|+...+.|-
T Consensus 23 EDTFlLlDaLekd~~eL~-~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~-~Tl~TA~~n~ 92 (209)
T KOG3191|consen 23 EDTFLLLDALEKDAAELK-GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALE-ATLETARCNR 92 (209)
T ss_pred chhhHHHHHHHHHHHHHh-hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHH-HHHHHHHhcC
Confidence 456778888876543111 11256899999999999865554 33 346899999999884 4556666554
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.4e-06 Score=76.38 Aligned_cols=40 Identities=15% Similarity=0.148 Sum_probs=34.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~ 74 (269)
+.++||+||||.|.....+++. +..+|++.|+++++++.+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a 116 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVC 116 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHH
Confidence 4679999999999998777665 567999999999999664
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.6e-07 Score=79.77 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=34.4
Q ss_pred CCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 186 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+++.|+|+++.|+++- +++.+.+.+.++|++++|.+.|-.
T Consensus 98 e~SVDlI~~Aqa~HWF-dle~fy~~~~rvLRk~Gg~iavW~ 137 (261)
T KOG3010|consen 98 EESVDLITAAQAVHWF-DLERFYKEAYRVLRKDGGLIAVWN 137 (261)
T ss_pred CcceeeehhhhhHHhh-chHHHHHHHHHHcCCCCCEEEEEE
Confidence 6799999999999976 589999999999998887776643
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.7e-06 Score=74.26 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc----CCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK----GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~----ga~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||+|||+|..++.++.. ...+|++.|+++.+++.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~ 91 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKL 91 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHH
Confidence 4679999999999999887753 23489999999998854
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.5e-06 Score=74.28 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=36.4
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
.+.++|.|+++=++.+.++....++.++++|+ |+|++++-
T Consensus 142 ~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLR-pgG~iifi 181 (252)
T KOG4300|consen 142 ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLR-PGGRIIFI 181 (252)
T ss_pred ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcC-CCcEEEEE
Confidence 46799999999999999999999999999999 88887764
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=7e-06 Score=79.58 Aligned_cols=63 Identities=16% Similarity=0.214 Sum_probs=43.0
Q ss_pred ceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 10 LKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 10 ~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
+.+++.+-.++-.+.. ...|.+|||+|||+|..++.++.. +..+|++.|.++.+++ .++.|+.
T Consensus 232 ~~vqd~~s~l~~~~l~-------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~-----~~~~~~~ 296 (445)
T PRK14904 232 VSVQNPTQALACLLLN-------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLE-----KIRSHAS 296 (445)
T ss_pred EEEeCHHHHHHHHhcC-------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHH-----HHHHHHH
Confidence 4677655444444433 235789999999999888766542 2348999999999984 3455553
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=3e-07 Score=81.04 Aligned_cols=69 Identities=14% Similarity=0.226 Sum_probs=49.0
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccc----ccc------CcchHHHHHHhhhcCceeEEE
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY----VGF------NNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~----fg~------~~~~~~F~~~~~~~g~~~~~~ 254 (269)
.+++||+|.++||+-..-.++.++-....+|+ |+|.+.++....- |-+ .++-.--.+.++..|+....+
T Consensus 185 ~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~-~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 185 TQERFDLIVAADVLPYLGALEGLFAGAAGLLA-PGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred cCCcccchhhhhHHHhhcchhhHHHHHHHhcC-CCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEe
Confidence 56799999999999889999999999999998 8888777643210 111 122333456777888754444
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.9e-06 Score=70.40 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=40.5
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCH-HHHHHHHcCCCeEEEEeCCHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGL-PGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl-~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
.+++||.++.. ..++++|||+|||+|. .+..++..|. .|+++|.++..+
T Consensus 3 ~i~~~l~~~~~----~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV 52 (134)
T PRK04148 3 TIAEFIAENYE----KGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAV 52 (134)
T ss_pred HHHHHHHHhcc----cccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHH
Confidence 57888888652 2367899999999996 8888888887 899999999876
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.38 E-value=6.6e-06 Score=79.27 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=35.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
+|.+|||+|||+|..++.++. .+..+|++.|.++..++. ++.|+.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~-----~~~n~~ 283 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKR-----VYENLK 283 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHH-----HHHHHH
Confidence 578999999999988877665 344589999999999843 455554
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.4e-06 Score=79.18 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=34.2
Q ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCC
Q 024311 31 QLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLS 67 (269)
Q Consensus 31 ~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~ 67 (269)
..+|+|+.|||+|||+|+++++|++.||++|.+.+-+
T Consensus 173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS 209 (517)
T KOG1500|consen 173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS 209 (517)
T ss_pred ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh
Confidence 4589999999999999999999999999999998864
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-05 Score=75.21 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC--CeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga--~~Vv~tD~~~~vl~~ 73 (269)
++.+|||+|||+|..++.++.... .+|++.|.++++++.
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~ 120 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEI 120 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHH
Confidence 678999999999999987776432 369999999998843
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-05 Score=73.02 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=35.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|.+|||+|||+|..++.++.. + ..+|++.|.++..++ .++.|+..
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~-----~~~~n~~~ 118 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTK-----VLIANINR 118 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHH-----HHHHHHHH
Confidence 5789999999999888776553 2 248999999999984 34555543
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.3e-06 Score=72.83 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=43.8
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccc-------------c-----------C----cc
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG-------------F-----------N----NA 236 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg-------------~-----------~----~~ 236 (269)
.+.+||+||.|+++......+.+++.+.|.-+ .++|+-+.+-++ + . -+
T Consensus 72 ~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr----~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~T 147 (193)
T PF07021_consen 72 PDQSFDYVILSQTLQAVRRPDEVLEEMLRVGR----RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCT 147 (193)
T ss_pred CCCCccEEehHhHHHhHhHHHHHHHHHHHhcC----eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCccccc
Confidence 56799999999999999888888777766532 444543322111 0 0 16
Q ss_pred hHHHHHHhhhcCce
Q 024311 237 ARHLRSLVDEEGIF 250 (269)
Q Consensus 237 ~~~F~~~~~~~g~~ 250 (269)
+.+|.+++++.|+-
T Consensus 148 i~DFe~lc~~~~i~ 161 (193)
T PF07021_consen 148 IKDFEDLCRELGIR 161 (193)
T ss_pred HHHHHHHHHHCCCE
Confidence 79999999999974
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.1e-06 Score=78.89 Aligned_cols=45 Identities=24% Similarity=0.211 Sum_probs=34.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
.|.+|||+|||+|.-++.++.. +..+|++.|.++..++ -++.|+.
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~-----~~~~n~~ 283 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQ-----LVEKHAK 283 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHH-----HHHHHHH
Confidence 5789999999999888766653 2358999999999984 4455553
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.5e-06 Score=76.08 Aligned_cols=99 Identities=21% Similarity=0.287 Sum_probs=73.7
Q ss_pred CCCCEEEEEcCCCCHHH-HHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPG-IFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~g-l~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.+-.+|.|||||+|... +++.+.+...|++.|-+++||... + + .-++++|.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~A-----a----------~-------------rlp~~~f~ 80 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKA-----A----------Q-------------RLPDATFE 80 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHH-----H----------H-------------hCCCCcee
Confidence 35569999999999877 556666667999999999998431 1 0 12456665
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+ | .....+|+|
T Consensus 81 ~aDl~~---------------------------------------------------------w-------~p~~~~dll 96 (257)
T COG4106 81 EADLRT---------------------------------------------------------W-------KPEQPTDLL 96 (257)
T ss_pred cccHhh---------------------------------------------------------c-------CCCCccchh
Confidence 554222 2 134589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
+++-++.+..++..|+..+-..|. |+|++-|=
T Consensus 97 faNAvlqWlpdH~~ll~rL~~~L~-Pgg~LAVQ 128 (257)
T COG4106 97 FANAVLQWLPDHPELLPRLVSQLA-PGGVLAVQ 128 (257)
T ss_pred hhhhhhhhccccHHHHHHHHHhhC-CCceEEEE
Confidence 999999999999999988888898 88876654
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.6e-06 Score=74.90 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~ 73 (269)
+.++|||||||+|.....++. .+..+|++.|+++++++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~ 105 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAV 105 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence 467999999999998876654 444589999999999854
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.6e-06 Score=77.51 Aligned_cols=39 Identities=13% Similarity=0.178 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~ 73 (269)
.+..+||||||+|...+.+|...+ ..+++.|.++.++..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~ 161 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQ 161 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHH
Confidence 567999999999999988887643 489999999998854
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-05 Score=76.24 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=35.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|.+|||+|||+|..++.++.. + ..+|++.|.++..+ ..++.|+..
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl-----~~~~~n~~r 299 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRL-----KKLQENAQR 299 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHH-----HHHHHHHHH
Confidence 5789999999999988776654 2 34899999999988 445566543
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-05 Score=69.60 Aligned_cols=136 Identities=21% Similarity=0.329 Sum_probs=85.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
+-++|||+|+++|..++.+|.. + ..+|+..|.+++..+ ..+.|+..+. +..+|++.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~-----~A~~~~~~ag-----------------~~~~I~~~ 102 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE-----IARENFRKAG-----------------LDDRIEVI 102 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH-----HHHHHHHHTT-----------------GGGGEEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH-----HHHHHHHhcC-----------------CCCcEEEE
Confidence 5679999999999999988863 2 248999999998873 3444554321 22467776
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.- ..+. .....++||+|
T Consensus 103 ~gda~~~l---~~l~------------------------------------------------------~~~~~~~fD~V 125 (205)
T PF01596_consen 103 EGDALEVL---PELA------------------------------------------------------NDGEEGQFDFV 125 (205)
T ss_dssp ES-HHHHH---HHHH------------------------------------------------------HTTTTTSEEEE
T ss_pred EeccHhhH---HHHH------------------------------------------------------hccCCCceeEE
Confidence 66644321 0000 00124689999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccc-cCc---------chHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG-FNN---------AARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg-~~~---------~~~~F~~~~~~~g~~~~~~ 254 (269)
+- |. +...+...++.+.++|+ |+|++++- ...+.| +.. .+.+|.+.+.+.--+.+.+
T Consensus 126 Fi-Da--~K~~y~~y~~~~~~ll~-~ggvii~D-N~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~l 192 (205)
T PF01596_consen 126 FI-DA--DKRNYLEYFEKALPLLR-PGGVIIAD-NVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETVL 192 (205)
T ss_dssp EE-ES--TGGGHHHHHHHHHHHEE-EEEEEEEE-TTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEEE
T ss_pred EE-cc--cccchhhHHHHHhhhcc-CCeEEEEc-cccccceecCccchhhhHHHHHHHHHHHHhCCCeeEEE
Confidence 97 55 46778888888888998 77776654 333333 111 2578999999876555544
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-05 Score=75.78 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
+..|.+++.+... ..+.+||||+||+|..|+.++.. +++|++.|.++.+++. ++.|+..+
T Consensus 192 ~e~l~~~v~~~~~-----~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~-----a~~N~~~~ 251 (362)
T PRK05031 192 NEKMLEWALDATK-----GSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAA-----AQYNIAAN 251 (362)
T ss_pred HHHHHHHHHHHhh-----cCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHH-----HHHHHHHh
Confidence 4455555555431 12357999999999999977765 5699999999999843 44555443
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.8e-06 Score=79.78 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-----CCeEEEEeCCHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-----AGTVHFQDLSAETI 71 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-----a~~Vv~tD~~~~vl 71 (269)
+++.||++|||+|.++..+++++ +.+|++.+-|+...
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~ 227 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV 227 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH
Confidence 68899999999999998887765 67999999998655
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.9e-06 Score=76.34 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=35.7
Q ss_pred CCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 36 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
+.+|||||||+|..|+.++... ++|++.|.++++++ ..+.|+..+
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~-----~a~~n~~~~ 242 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVN-----AAQYNIAAN 242 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHH-----HHHHHHHHc
Confidence 3479999999999999877654 59999999999984 445555443
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=74.17 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC--CCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g--a~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||||||+|.....++... ..+|++.|+++++|+.
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~ 103 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKE 103 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHH
Confidence 56799999999998886655442 2489999999999954
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.4e-06 Score=77.78 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=39.4
Q ss_pred CCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 36 GKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
+.+|||+.||+|..||.++.. |+++|++.|.|++.+ +.++.|+..|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av-----~~i~~N~~~N 92 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAV-----ESIKNNVEYN 92 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHH-----HHHHHHHHHh
Confidence 468999999999999999886 778999999999998 5566676654
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.2e-06 Score=77.36 Aligned_cols=46 Identities=26% Similarity=0.416 Sum_probs=37.4
Q ss_pred CCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 36 GKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
+.+|||++||+|..|+.++. .++.+|++.|.|+..+ +.++.|+..|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av-----~~a~~N~~~N 104 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAV-----ELIKKNLELN 104 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHH-----HHHHHHHHHh
Confidence 46899999999999998875 4667899999999998 4455666554
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.2e-05 Score=75.74 Aligned_cols=40 Identities=30% Similarity=0.199 Sum_probs=32.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~ 74 (269)
..++||+||||+|.....+.+.+ ..+|++.|++++|++.+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelA 190 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMA 190 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Confidence 45799999999998766666553 47999999999999664
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.8e-06 Score=75.75 Aligned_cols=128 Identities=27% Similarity=0.310 Sum_probs=81.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+|++||+|-|=||..|+.|+..||.+|+..|.+...|+. .+.|+.+|. + ....++|..
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~-----a~~N~~lNg----------~------~~~~~~~~~ 180 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEW-----AKENAALNG----------L------DLDRHRFIQ 180 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHH-----HHHHHHHTT-----------------CCTCEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHH-----HHHHHHHcC----------C------CccceEEEe
Confidence 4789999999999999999999999999999999999844 455555441 0 012455544
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
.|.-.. |.+. ...++||+||
T Consensus 181 ~Dvf~~--------------------------------------------------------l~~~----~~~~~fD~II 200 (286)
T PF10672_consen 181 GDVFKF--------------------------------------------------------LKRL----KKGGRFDLII 200 (286)
T ss_dssp S-HHHH--------------------------------------------------------HHHH----HHTT-EEEEE
T ss_pred cCHHHH--------------------------------------------------------HHHH----hcCCCCCEEE
Confidence 442210 1111 1234899988
Q ss_pred Eeccc-cc------cCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcC
Q 024311 194 LTEIP-YS------VTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEG 248 (269)
Q Consensus 194 asD~i-Y~------~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g 248 (269)
. |.. |. ...+..|+..+-++|+ |+|.++.++..+.+ +.+.|++.+.+.+
T Consensus 201 l-DPPsF~k~~~~~~~~y~~L~~~a~~ll~-~gG~l~~~scs~~i----~~~~l~~~~~~~a 256 (286)
T PF10672_consen 201 L-DPPSFAKSKFDLERDYKKLLRRAMKLLK-PGGLLLTCSCSHHI----SPDFLLEAVAEAA 256 (286)
T ss_dssp E---SSEESSTCEHHHHHHHHHHHHHHTEE-EEEEEEEEE--TTS-----HHHHHHHHHHHH
T ss_pred E-CCCCCCCCHHHHHHHHHHHHHHHHHhcC-CCCEEEEEcCCccc----CHHHHHHHHHHhC
Confidence 6 221 11 2345667777777888 89999888877665 4567888888765
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.6e-06 Score=72.67 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=74.9
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHH-cC------CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCC
Q 024311 33 SFRGKRVLELSCGYGLPGIFACL-KG------AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTL 105 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~-~g------a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~ 105 (269)
...+.+|||++||||-..+-... .+ .++|++.|+||++|.-..+.-.+ .++.+
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~---------------~~l~~----- 157 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK---------------RPLKA----- 157 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh---------------cCCCc-----
Confidence 34679999999999977754433 12 26899999999998432111100 11211
Q ss_pred CCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccC
Q 024311 106 APSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQG 185 (269)
Q Consensus 106 ~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~ 185 (269)
...+.+.++|-+++| ..
T Consensus 158 ~~~~~w~~~dAE~Lp---------------------------------------------------------------Fd 174 (296)
T KOG1540|consen 158 SSRVEWVEGDAEDLP---------------------------------------------------------------FD 174 (296)
T ss_pred CCceEEEeCCcccCC---------------------------------------------------------------CC
Confidence 123566666666543 24
Q ss_pred CCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEE
Q 024311 186 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYL 224 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~v 224 (269)
+..||....+=-|=+..+.+..++...|.|| |+|+++.
T Consensus 175 d~s~D~yTiafGIRN~th~~k~l~EAYRVLK-pGGrf~c 212 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVTHIQKALREAYRVLK-PGGRFSC 212 (296)
T ss_pred CCcceeEEEecceecCCCHHHHHHHHHHhcC-CCcEEEE
Confidence 5589999888889999999999999999999 8888764
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.4e-05 Score=70.96 Aligned_cols=40 Identities=18% Similarity=0.102 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~ 74 (269)
+.++||+||||+|.....++... ..+|++.|+++++++.+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a 112 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELS 112 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHH
Confidence 45699999999998776665554 57899999999998543
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.7e-05 Score=68.97 Aligned_cols=137 Identities=14% Similarity=0.198 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
.+.++|||+|+|+|..++.+|.. + ..+|+..|.+++..+. .+.|+..+ .+..++++
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~-----Ar~n~~~a-----------------Gl~~~I~l 174 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEV-----AKRYYELA-----------------GVSHKVNV 174 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHc-----------------CCCCcEEE
Confidence 36789999999999999988763 2 2479999999988743 44555432 12245666
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|..+. +..+ ......++||+
T Consensus 175 i~GdA~e~---L~~l------------------------------------------------------~~~~~~~~FD~ 197 (278)
T PLN02476 175 KHGLAAES---LKSM------------------------------------------------------IQNGEGSSYDF 197 (278)
T ss_pred EEcCHHHH---HHHH------------------------------------------------------HhcccCCCCCE
Confidence 66653321 0000 00012358999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccccc-C---------cchHHHHHHhhhcCceeEEE
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF-N---------NAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~-~---------~~~~~F~~~~~~~g~~~~~~ 254 (269)
|+- |.- ...+...++.+.++|+ |+|++++- ...+.|. . -++.+|.+.+.+..-+.+.+
T Consensus 198 VFI-Da~--K~~Y~~y~e~~l~lL~-~GGvIV~D-NvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~l 265 (278)
T PLN02476 198 AFV-DAD--KRMYQDYFELLLQLVR-VGGVIVMD-NVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSISM 265 (278)
T ss_pred EEE-CCC--HHHHHHHHHHHHHhcC-CCcEEEEe-cCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEEE
Confidence 997 542 4667888888888998 88886653 2233331 0 13689999888766555544
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.5e-05 Score=70.24 Aligned_cols=63 Identities=24% Similarity=0.353 Sum_probs=48.6
Q ss_pred CCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE---cccccccCc-------------------chHHHHHH
Q 024311 186 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT---KKNYVGFNN-------------------AARHLRSL 243 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~---k~~~fg~~~-------------------~~~~F~~~ 243 (269)
+.+||+|.+--++=..+..-.|++.|++.|+ |+|++++|. =+.|...++ .+..|++.
T Consensus 149 ~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~-p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~~v 227 (265)
T PF05219_consen 149 DFKFDVISCLNVLDRCDRPLTLLRDIRRALK-PNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLVNV 227 (265)
T ss_pred CCceEEEeehhhhhccCCHHHHHHHHHHHhC-CCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHHHH
Confidence 3589999999999999999999999999999 799998882 122222221 35677788
Q ss_pred hhhcCc
Q 024311 244 VDEEGI 249 (269)
Q Consensus 244 ~~~~g~ 249 (269)
++..||
T Consensus 228 ~~p~GF 233 (265)
T PF05219_consen 228 FEPAGF 233 (265)
T ss_pred HHhcCC
Confidence 888886
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG2497 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.6e-07 Score=79.76 Aligned_cols=54 Identities=22% Similarity=0.180 Sum_probs=43.9
Q ss_pred ccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeC
Q 024311 7 DGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL 66 (269)
Q Consensus 7 e~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~ 66 (269)
.+|+.+|++++.|.+++.+++ ..+.+++|.++|||+++..+++++.+ .++.+..
T Consensus 66 ~tg~~~w~~al~L~~~l~~~~----d~~~~~~v~~l~~gi~~~~~~~a~~~--~~v~~~~ 119 (262)
T KOG2497|consen 66 RTGLSVWESALSLEADLRDKP----DLSSELTVEELGCDIALKHVLAARVP--DCVVTLD 119 (262)
T ss_pred HhccccchHHHHHHHHHhhCc----ccccccchHhhccCHHHHHHHHHhcc--cceecCC
Confidence 479999999999999999874 33789999999999999997777765 3444444
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00013 Score=64.43 Aligned_cols=134 Identities=17% Similarity=0.262 Sum_probs=88.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
..++|||+|.+.|..+|.+|. +. ..+++.+|+|++.. ...+.|+.... ..+++..+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~-----~~A~~n~~~ag-----------------~~~~i~~~ 116 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERA-----EIARENLAEAG-----------------VDDRIELL 116 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHH-----HHHHHHHHHcC-----------------CcceEEEE
Confidence 678999999999999988765 22 34899999999988 55677775431 23345554
Q ss_pred c-CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 113 A-GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 113 ~-~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
. +|+-+.- +. ...++||+
T Consensus 117 ~~gdal~~l------------------------------------------------------------~~-~~~~~fDl 135 (219)
T COG4122 117 LGGDALDVL------------------------------------------------------------SR-LLDGSFDL 135 (219)
T ss_pred ecCcHHHHH------------------------------------------------------------Hh-ccCCCccE
Confidence 4 3433210 00 24579999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccc------------cCcchHHHHHHhhhcCceeEEEEe
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG------------FNNAARHLRSLVDEEGIFGAHLIK 256 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg------------~~~~~~~F~~~~~~~g~~~~~~~~ 256 (269)
|+- |. +...++..++.+-++|+ |+|++++-.-.. -| ...+++.|.+.+.+.--+.+.++.
T Consensus 136 iFI-Da--dK~~yp~~le~~~~lLr-~GGliv~DNvl~-~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP 207 (219)
T COG4122 136 VFI-DA--DKADYPEYLERALPLLR-PGGLIVADNVLF-GGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLP 207 (219)
T ss_pred EEE-eC--ChhhCHHHHHHHHHHhC-CCcEEEEeeccc-CCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEe
Confidence 996 42 46677888888888898 888887643221 11 111368888888876544555544
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0002 Score=64.24 Aligned_cols=131 Identities=22% Similarity=0.288 Sum_probs=87.7
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHH-cCC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACL-KGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH 110 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~-~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 110 (269)
...|.+|||.|.|+|.++.++|+ .|+ .+|+.-|+.++.++ -.+.|+.... +..+|.
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k-----~A~~Nl~~~~-----------------l~d~v~ 149 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAK-----TARENLSEFG-----------------LGDRVT 149 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHH-----HHHHHHHHhc-----------------cccceE
Confidence 56899999999999999988875 333 68999999998874 4455554320 112233
Q ss_pred eecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 024311 111 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 190 (269)
Q Consensus 111 ~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fD 190 (269)
+..+|-.+ ......||
T Consensus 150 ~~~~Dv~~----------------------------------------------------------------~~~~~~vD 165 (256)
T COG2519 150 LKLGDVRE----------------------------------------------------------------GIDEEDVD 165 (256)
T ss_pred EEeccccc----------------------------------------------------------------cccccccC
Confidence 32222111 01233899
Q ss_pred EEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEEEeeecCc
Q 024311 191 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDR 261 (269)
Q Consensus 191 lIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~~~~~~~~ 261 (269)
.|+. | .......++.++.+|+ |+|++.+-++-. ..+++-.+.+++.||...+. +|...|
T Consensus 166 av~L-D----mp~PW~~le~~~~~Lk-pgg~~~~y~P~v-----eQv~kt~~~l~~~g~~~ie~-~E~l~R 224 (256)
T COG2519 166 AVFL-D----LPDPWNVLEHVSDALK-PGGVVVVYSPTV-----EQVEKTVEALRERGFVDIEA-VETLVR 224 (256)
T ss_pred EEEE-c----CCChHHHHHHHHHHhC-CCcEEEEEcCCH-----HHHHHHHHHHHhcCccchhh-heeeeh
Confidence 9998 4 4566778888899998 777766554433 35788888999999876666 555443
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.01 E-value=6e-05 Score=69.85 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=33.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~ 74 (269)
..++||+||||.|.....+++.. ..+|++.|++++|++.+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~a 131 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVS 131 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHH
Confidence 46899999999998887777653 46899999999999654
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.7e-06 Score=67.58 Aligned_cols=69 Identities=19% Similarity=0.299 Sum_probs=50.3
Q ss_pred eeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 12 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 12 vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
-++..-.+|.-+...+-..-..+.|++++|||||||.+++.++..++..|++-|++|+.|+. ..+|.+.
T Consensus 25 QY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEI-----f~rNaeE 93 (185)
T KOG3420|consen 25 QYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEI-----FTRNAEE 93 (185)
T ss_pred hCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHH-----HhhchHH
Confidence 34444445544433332223468999999999999999999999999999999999999955 4556543
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.9e-06 Score=71.44 Aligned_cols=62 Identities=27% Similarity=0.285 Sum_probs=45.5
Q ss_pred CccCceeecc---HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 6 PDGFLKCWES---SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 6 ye~G~~vW~a---s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
|..|-.-|.. +-.|.+|+.+.. .-.+.+||..|||.|.=.+.+|..|. +|++.|+++..++.
T Consensus 10 w~~~~~~w~~~~~~p~L~~~~~~l~-----~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~ 74 (218)
T PF05724_consen 10 WQEGQTPWDQGEPNPALVEYLDSLA-----LKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQ 74 (218)
T ss_dssp HHTT--TT--TTSTHHHHHHHHHHT-----TSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHH
T ss_pred HhcCCCCCCCCCCCHHHHHHHHhcC-----CCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHH
Confidence 3444445554 678899988732 22567999999999999999999997 89999999988854
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00014 Score=63.52 Aligned_cols=46 Identities=26% Similarity=0.211 Sum_probs=36.7
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
...+.+|||+|||+|..+-++|+... +|+..++.+++.+ -.+.|+.
T Consensus 70 ~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~-----~A~~~L~ 115 (209)
T COG2518 70 LKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAE-----QARRNLE 115 (209)
T ss_pred CCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHH-----HHHHHHH
Confidence 44788999999999999988787755 9999999998773 3455554
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00014 Score=66.88 Aligned_cols=39 Identities=15% Similarity=0.014 Sum_probs=33.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
..+.+|||+|||+|..+..++..+. +|++.|+++.++..
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~ 73 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAE 73 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHH
Confidence 3678999999999999988777654 89999999999843
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.89 E-value=7e-05 Score=65.67 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=29.6
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHH-cCC-CeEEEEeCCHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACL-KGA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~-~ga-~~Vv~tD~~~~vl~~ 73 (269)
.-+|.+|||+|||+|..+-+++. .|. .+|+..|.++++.+.
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~ 112 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAER 112 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHH
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHH
Confidence 34788999999999988855554 454 369999999998844
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00017 Score=64.03 Aligned_cols=54 Identities=20% Similarity=0.155 Sum_probs=43.2
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
...-.|++|+.... .-++.+||..|||.|.=.+.+|..|. +|++.|+++..++.
T Consensus 27 ~pnp~L~~~~~~l~-----~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~ 80 (226)
T PRK13256 27 SPNEFLVKHFSKLN-----INDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLS 80 (226)
T ss_pred CCCHHHHHHHHhcC-----CCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHH
Confidence 34556777775542 12578999999999999999999998 79999999998854
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00011 Score=66.22 Aligned_cols=39 Identities=21% Similarity=0.140 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.++.+|||+|||+|..++.++..+. +|++.|+++.+++.
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~ 66 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEF 66 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHH
Confidence 4678999999999999998888865 89999999998843
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.8e-05 Score=68.05 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=39.0
Q ss_pred HHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 19 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 19 La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+++.+.+.. ...++.+|||+|||+|..+..++..++ +|++.|.++.+++.
T Consensus 30 i~~~i~~~l----~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~ 79 (272)
T PRK00274 30 ILDKIVDAA----GPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPI 79 (272)
T ss_pred HHHHHHHhc----CCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHH
Confidence 445555442 123678999999999999988888876 89999999998844
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00028 Score=61.54 Aligned_cols=63 Identities=14% Similarity=0.252 Sum_probs=42.3
Q ss_pred CCCCccEEEEecccccc--CCHHHHHHHHHHhcCCCCeEEEEEEcccccc--cCcchHHHHHHhhhcC
Q 024311 185 GEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKNYVG--FNNAARHLRSLVDEEG 248 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~--~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg--~~~~~~~F~~~~~~~g 248 (269)
....||.|+++-+++-. +..+.|++...++|+ ++|.+++=..-.+-| ...+...|-..++++.
T Consensus 99 ~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~-~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rd 165 (204)
T PF06080_consen 99 SPESFDAIFCINMLHISPWSAVEGLFAGAARLLK-PGGLLFLYGPFNRDGKFTSESNAAFDASLRSRD 165 (204)
T ss_pred CCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCC-CCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCC
Confidence 45699999999999865 455678999999998 788766433222222 1235566666666543
|
The function of this family is unknown. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00018 Score=63.63 Aligned_cols=97 Identities=23% Similarity=0.186 Sum_probs=66.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
..++|+|||+|.|..++.+++. ...++++.|. |++++. ... .++|++..
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~-----~~~------------------------~~rv~~~~ 149 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQ-----AKE------------------------ADRVEFVP 149 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCC-----HHH------------------------TTTEEEEE
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhc-----ccc------------------------cccccccc
Confidence 4468999999999999877654 4468999999 777732 221 13567766
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|.-+ ..+. +|+|+
T Consensus 150 gd~f~-----------------------------------------------------------------~~P~-~D~~~ 163 (241)
T PF00891_consen 150 GDFFD-----------------------------------------------------------------PLPV-ADVYL 163 (241)
T ss_dssp S-TTT-----------------------------------------------------------------CCSS-ESEEE
T ss_pred ccHHh-----------------------------------------------------------------hhcc-cccee
Confidence 66441 1223 99999
Q ss_pred EeccccccCC--HHHHHHHHHHhcCCCC--eEEEEEEcc
Q 024311 194 LTEIPYSVTS--LKKLYLLIKKCLRPPY--GVVYLATKK 228 (269)
Q Consensus 194 asD~iY~~~~--~~~L~~~l~~~L~~p~--g~~~va~k~ 228 (269)
.+.++++... ...+++.+...|+ |+ |+++|.-..
T Consensus 164 l~~vLh~~~d~~~~~iL~~~~~al~-pg~~g~llI~e~~ 201 (241)
T PF00891_consen 164 LRHVLHDWSDEDCVKILRNAAAALK-PGKDGRLLIIEMV 201 (241)
T ss_dssp EESSGGGS-HHHHHHHHHHHHHHSE-ECTTEEEEEEEEE
T ss_pred eehhhhhcchHHHHHHHHHHHHHhC-CCCCCeEEEEeec
Confidence 9999987654 4457888888898 77 999987544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0014 Score=58.46 Aligned_cols=167 Identities=16% Similarity=0.194 Sum_probs=95.0
Q ss_pred CCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 5 KPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 5 ~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
.|+=|+.+++.++.=|.|+.++ ..+.|++||=|| =-=+.||++|+.+ +++|++.|+++.+++. +....
T Consensus 19 ~~DQ~~~T~eT~~~Ra~~~~~~-----gdL~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~f-----I~~~a 87 (243)
T PF01861_consen 19 ELDQGYATPETTLRRAALMAER-----GDLEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDF-----INRVA 87 (243)
T ss_dssp GGT---B-HHHHHHHHHHHHHT-----T-STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHH-----HHHHH
T ss_pred ccccccccHHHHHHHHHHHHhc-----CcccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHH-----HHHHH
Confidence 4677888999999999999886 467999999999 4458898888743 5799999999998854 33322
Q ss_pred HHhhhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCc
Q 024311 84 EQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSS 163 (269)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 163 (269)
... .+ +++.+..|...
T Consensus 88 ~~~-----------------gl--~i~~~~~DlR~--------------------------------------------- 103 (243)
T PF01861_consen 88 EEE-----------------GL--PIEAVHYDLRD--------------------------------------------- 103 (243)
T ss_dssp HHH-----------------T----EEEE---TTS---------------------------------------------
T ss_pred HHc-----------------CC--ceEEEEecccc---------------------------------------------
Confidence 211 01 13333333221
Q ss_pred ccccccccCchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHH
Q 024311 164 SRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSL 243 (269)
Q Consensus 164 ~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~ 243 (269)
.+|. ...++||+++. |..|-++-+..++..--..|+.+++..|++..+..- ......++...
T Consensus 104 -----~LP~-----------~~~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~-s~~~~~~~Q~~ 165 (243)
T PF01861_consen 104 -----PLPE-----------ELRGKFDVFFT-DPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEA-SPDKWLEVQRF 165 (243)
T ss_dssp --------T-----------TTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT---HHHHHHHHHH
T ss_pred -----cCCH-----------HHhcCCCEEEe-CCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcC-cHHHHHHHHHH
Confidence 1110 24579999998 999988888777776666888777788887554320 01123567777
Q ss_pred hhhcCceeEEEEeeecCcceE
Q 024311 244 VDEEGIFGAHLIKEMTDRDIW 264 (269)
Q Consensus 244 ~~~~g~~~~~~~~~~~~~~i~ 264 (269)
+-+.|++...++..+..++-|
T Consensus 166 l~~~gl~i~dii~~Fn~Y~ga 186 (243)
T PF01861_consen 166 LLEMGLVITDIIPDFNRYEGA 186 (243)
T ss_dssp HHTS--EEEEEEEEEEEB---
T ss_pred HHHCCcCHHHHHhhhcccccc
Confidence 779999989998888765544
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0012 Score=61.83 Aligned_cols=56 Identities=34% Similarity=0.335 Sum_probs=43.8
Q ss_pred HHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 19 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 19 La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
||..+.... ...+|..|||==||||-.-+.|.+.|+ +|+++|++..+++ -.+.|++
T Consensus 185 lAR~mVNLa----~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~-----gak~Nl~ 240 (347)
T COG1041 185 LARAMVNLA----RVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVR-----GAKINLE 240 (347)
T ss_pred HHHHHHHHh----ccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHh-----hhhhhhh
Confidence 455554432 245788999999999988888999999 8999999999984 4566664
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0015 Score=56.19 Aligned_cols=57 Identities=19% Similarity=0.270 Sum_probs=36.5
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCc
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI 249 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~ 249 (269)
...+||+|++== ...++.+++....+++ ++|+++.--.+.+ ...+.+....++..|.
T Consensus 112 ~~~~fd~v~aRA----v~~l~~l~~~~~~~l~-~~G~~l~~KG~~~---~~El~~~~~~~~~~~~ 168 (184)
T PF02527_consen 112 YRESFDVVTARA----VAPLDKLLELARPLLK-PGGRLLAYKGPDA---EEELEEAKKAWKKLGL 168 (184)
T ss_dssp TTT-EEEEEEES----SSSHHHHHHHHGGGEE-EEEEEEEEESS-----HHHHHTHHHHHHCCCE
T ss_pred cCCCccEEEeeh----hcCHHHHHHHHHHhcC-CCCEEEEEcCCCh---HHHHHHHHhHHHHhCC
Confidence 456999999832 2457788999999998 7777654332221 2345666777777765
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00017 Score=62.86 Aligned_cols=49 Identities=22% Similarity=0.212 Sum_probs=34.4
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
.-.|..|+|+.||.|..+|.+|+ ..+++|++.|.||..++.+ ..|+++|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L-~~Ni~lN 148 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYL-KENIRLN 148 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHH-HHHHHHT
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHH-HHHHHHc
Confidence 34688999999999999999987 3345899999999998543 3444444
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00031 Score=62.67 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=36.2
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHH
Q 024311 32 LSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~ 73 (269)
..+.++.+||+||-+|.+++.+|+ .|+..|++.|+++-.++.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~ 97 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQR 97 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHH
Confidence 467899999999999999987665 788899999999987743
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0017 Score=62.86 Aligned_cols=121 Identities=26% Similarity=0.409 Sum_probs=83.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+.+||||=||.|..||.+|... ++|++++++++.+ ...+.|+..|. . .|+.|..+
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV-----~~A~~NA~~n~-----------------i-~N~~f~~~ 348 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAV-----EAAQENAAANG-----------------I-DNVEFIAG 348 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHH-----HHHHHHHHHcC-----------------C-CcEEEEeC
Confidence 56799999999999999999654 5999999999998 55666665541 1 24777766
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
+-++... .| .....||.||.
T Consensus 349 ~ae~~~~-----------------------------------------------------~~-------~~~~~~d~Vvv 368 (432)
T COG2265 349 DAEEFTP-----------------------------------------------------AW-------WEGYKPDVVVV 368 (432)
T ss_pred CHHHHhh-----------------------------------------------------hc-------cccCCCCEEEE
Confidence 6544310 01 12358899987
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCc
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI 249 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~ 249 (269)
|..= .-.-+.+++.|.++ + |..++||++..- ++...+..+.+.|.
T Consensus 369 -DPPR-~G~~~~~lk~l~~~-~-p~~IvYVSCNP~------TlaRDl~~L~~~gy 413 (432)
T COG2265 369 -DPPR-AGADREVLKQLAKL-K-PKRIVYVSCNPA------TLARDLAILASTGY 413 (432)
T ss_pred -CCCC-CCCCHHHHHHHHhc-C-CCcEEEEeCCHH------HHHHHHHHHHhCCe
Confidence 4332 12334677777764 4 778999998654 56677788888874
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0013 Score=59.13 Aligned_cols=130 Identities=20% Similarity=0.237 Sum_probs=80.8
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH 110 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 110 (269)
...|.+|||-|.|+|.+++++++. +..+|+--|+.++-. ...+.|+..+. +..+|.
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~-----~~A~~n~~~~g-----------------l~~~v~ 95 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRA-----EKARKNFERHG-----------------LDDNVT 95 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHH-----HHHHHHHHHTT-----------------CCTTEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHH-----HHHHHHHHHcC-----------------CCCCce
Confidence 458999999999999999887753 235899999999887 55666765431 223555
Q ss_pred eecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 024311 111 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 190 (269)
Q Consensus 111 ~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fD 190 (269)
+...|.... .| .. .....+|
T Consensus 96 ~~~~Dv~~~-------------------------g~----------------------------------~~-~~~~~~D 115 (247)
T PF08704_consen 96 VHHRDVCEE-------------------------GF----------------------------------DE-ELESDFD 115 (247)
T ss_dssp EEES-GGCG-------------------------------------------------------------ST-T-TTSEE
T ss_pred eEecceecc-------------------------cc----------------------------------cc-cccCccc
Confidence 554443210 00 00 1245899
Q ss_pred EEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEE
Q 024311 191 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 191 lIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
.|+. |+.-=...++.+ .+.|++++|++.+-.+-.. .+++.++.+++.||...++
T Consensus 116 avfL-Dlp~Pw~~i~~~----~~~L~~~gG~i~~fsP~ie-----Qv~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 116 AVFL-DLPDPWEAIPHA----KRALKKPGGRICCFSPCIE-----QVQKTVEALREHGFTDIET 169 (247)
T ss_dssp EEEE-ESSSGGGGHHHH----HHHE-EEEEEEEEEESSHH-----HHHHHHHHHHHTTEEEEEE
T ss_pred EEEE-eCCCHHHHHHHH----HHHHhcCCceEEEECCCHH-----HHHHHHHHHHHCCCeeeEE
Confidence 9998 776555555444 4456337887766555443 5889999999999866555
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00058 Score=61.38 Aligned_cols=142 Identities=15% Similarity=0.208 Sum_probs=85.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
+-++|||||+++|..++.+|.. + -.+|+..|.+++..+. .+.|+... .+..+|++.
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~-----Ar~~~~~a-----------------g~~~~I~~~ 136 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYEL-----GLPVIQKA-----------------GVAHKIDFR 136 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHH-----HHHHHHHC-----------------CCCCceEEE
Confidence 5679999999999999987753 2 2489999999987743 34444332 123567777
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.++..+. +..+. ......++||+|
T Consensus 137 ~G~a~e~---L~~l~-----------------------------------------------------~~~~~~~~fD~i 160 (247)
T PLN02589 137 EGPALPV---LDQMI-----------------------------------------------------EDGKYHGTFDFI 160 (247)
T ss_pred eccHHHH---HHHHH-----------------------------------------------------hccccCCcccEE
Confidence 6664331 00000 000123589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccccc----------------CcchHHHHHHhhhcCceeEEEEe
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------------NNAARHLRSLVDEEGIFGAHLIK 256 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~----------------~~~~~~F~~~~~~~g~~~~~~~~ 256 (269)
+- |.= ...+...++.+.++|+ |+|++++- ...+.|. ...+++|.+.+.+..-+.+.++
T Consensus 161 Fi-Dad--K~~Y~~y~~~~l~ll~-~GGviv~D-Nvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~ll- 234 (247)
T PLN02589 161 FV-DAD--KDNYINYHKRLIDLVK-VGGVIGYD-NTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICML- 234 (247)
T ss_pred Ee-cCC--HHHhHHHHHHHHHhcC-CCeEEEEc-CCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEE-
Confidence 97 432 5567777788788888 88886643 2222221 0125588888877655555443
Q ss_pred eecC
Q 024311 257 EMTD 260 (269)
Q Consensus 257 ~~~~ 260 (269)
.+.|
T Consensus 235 PigD 238 (247)
T PLN02589 235 PVGD 238 (247)
T ss_pred EeCC
Confidence 4444
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0006 Score=60.17 Aligned_cols=38 Identities=24% Similarity=0.387 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+..-|||+|||+||.|-++...| ..+++.|+++.||..
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~ 87 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQ 87 (270)
T ss_pred CCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHH
Confidence 57799999999999998877777 489999999999954
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00019 Score=66.82 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCCHHH-HHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPG-IFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 35 ~~~~VLELGcGtGl~g-l~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
.+.+|||||||+|... +++++....+++++|+++..++.+ ..|+..|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A-~~Nv~~N 161 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASA-QAIISAN 161 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHH-HHHHHhc
Confidence 4679999999998665 444444334899999999999543 3455444
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00048 Score=64.61 Aligned_cols=40 Identities=18% Similarity=0.145 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~ 74 (269)
..++||.||+|.|.....+.+. +..+|++.|+++++++.+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~la 143 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFC 143 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHH
Confidence 4579999999999888766664 467899999999999654
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0014 Score=55.58 Aligned_cols=56 Identities=23% Similarity=0.194 Sum_probs=44.1
Q ss_pred eeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCC--CeEEEEeCCHHHH
Q 024311 12 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETI 71 (269)
Q Consensus 12 vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga--~~Vv~tD~~~~vl 71 (269)
+=++|-.||+-+.+.+. .-+|+-|||||.|||...-+....|. ..+++.+|+++..
T Consensus 29 I~PsSs~lA~~M~s~I~----pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~ 86 (194)
T COG3963 29 ILPSSSILARKMASVID----PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFV 86 (194)
T ss_pred ecCCcHHHHHHHHhccC----cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHH
Confidence 34677788888888762 33788999999999998866655553 5799999999987
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00016 Score=64.22 Aligned_cols=64 Identities=23% Similarity=0.341 Sum_probs=45.4
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHH-----HHhhhcCceeEEE
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLR-----SLVDEEGIFGAHL 254 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~-----~~~~~~g~~~~~~ 254 (269)
.++++|+||+|--+++.+++|.-+.-++..|+ |+|.++ |+ -|| |+++.+.. ..++..|-+++++
T Consensus 134 ~ens~DLiisSlslHW~NdLPg~m~~ck~~lK-PDg~Fi-as---mlg-gdTLyELR~slqLAelER~GGiSphi 202 (325)
T KOG2940|consen 134 KENSVDLIISSLSLHWTNDLPGSMIQCKLALK-PDGLFI-AS---MLG-GDTLYELRCSLQLAELEREGGISPHI 202 (325)
T ss_pred cccchhhhhhhhhhhhhccCchHHHHHHHhcC-CCccch-hH---Hhc-cccHHHHHHHhhHHHHHhccCCCCCc
Confidence 56799999999999999999999999999999 888765 32 122 33443332 3345566556655
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0012 Score=60.15 Aligned_cols=44 Identities=18% Similarity=0.428 Sum_probs=34.4
Q ss_pred CCCCccEEEEeccc-c-ccCCHHHHHHHHHHhcCCCCeEEEEEEccc
Q 024311 185 GEGGYDVILLTEIP-Y-SVTSLKKLYLLIKKCLRPPYGVVYLATKKN 229 (269)
Q Consensus 185 ~~~~fDlIlasD~i-Y-~~~~~~~L~~~l~~~L~~p~g~~~va~k~~ 229 (269)
..+.||+|++=+|+ | +.+.-..++..+...|+ |+|.++++.--.
T Consensus 199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~-~gG~LflG~sE~ 244 (268)
T COG1352 199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLK-PGGLLFLGHSET 244 (268)
T ss_pred ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhC-CCCEEEEccCcc
Confidence 45689999998764 3 44556679999999998 999999985443
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0017 Score=57.11 Aligned_cols=65 Identities=25% Similarity=0.425 Sum_probs=49.4
Q ss_pred CCCCccEEEEeccccccCCHHH---HHHHHHHhcCCCCeE-----EEEE------EcccccccCcchHHHHHHhhhcCce
Q 024311 185 GEGGYDVILLTEIPYSVTSLKK---LYLLIKKCLRPPYGV-----VYLA------TKKNYVGFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~---L~~~l~~~L~~p~g~-----~~va------~k~~~fg~~~~~~~F~~~~~~~g~~ 250 (269)
..++||+|..|=|+-...+... ++....++|+ |+|. ++|+ ...||+ ....|.+.|+..||.
T Consensus 101 ~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~-~~g~~~~~~LFlVlP~~Cv~NSRy~----~~~~l~~im~~LGf~ 175 (219)
T PF11968_consen 101 ESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLK-PPGLSLFPSLFLVLPLPCVTNSRYM----TEERLREIMESLGFT 175 (219)
T ss_pred cccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhC-CCCccCcceEEEEeCchHhhccccc----CHHHHHHHHHhCCcE
Confidence 4569999999999987776664 6666777898 6677 6665 345666 578999999999985
Q ss_pred eEEE
Q 024311 251 GAHL 254 (269)
Q Consensus 251 ~~~~ 254 (269)
..+.
T Consensus 176 ~~~~ 179 (219)
T PF11968_consen 176 RVKY 179 (219)
T ss_pred EEEE
Confidence 5444
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00055 Score=61.33 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=33.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
.++.+|||+|||+|..+..++..+. +|++.|.++.+++
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~ 65 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAE 65 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHH
Confidence 3678999999999999988888776 7999999999883
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00091 Score=63.06 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=35.2
Q ss_pred CEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 37 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
.+||||-||+|..|+.+|.... +|++.+.+++++ .+.+.|+..|
T Consensus 198 ~~vlDlycG~G~fsl~la~~~~-~V~gvE~~~~av-----~~A~~Na~~N 241 (352)
T PF05958_consen 198 GDVLDLYCGVGTFSLPLAKKAK-KVIGVEIVEEAV-----EDARENAKLN 241 (352)
T ss_dssp TEEEEES-TTTCCHHHHHCCSS-EEEEEES-HHHH-----HHHHHHHHHT
T ss_pred CcEEEEeecCCHHHHHHHhhCC-eEEEeeCCHHHH-----HHHHHHHHHc
Confidence 3899999999999999997754 899999999998 5566666655
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0012 Score=59.91 Aligned_cols=69 Identities=17% Similarity=0.122 Sum_probs=47.0
Q ss_pred eccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHH-HcCCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 13 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 13 W~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa-~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
||.- .+++++.+.... ...+++..+||+|||+|..++.++ .++..+|+++|.++..+.+ +.+|++++..
T Consensus 128 pETE-E~V~~Vid~~~~-~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~L-a~eN~qr~~l 197 (328)
T KOG2904|consen 128 PETE-EWVEAVIDALNN-SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKL-AKENAQRLKL 197 (328)
T ss_pred ccHH-HHHHHHHHHHhh-hhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHH-HHHHHHHHhh
Confidence 4433 344444443221 234567799999999999887644 4667799999999988855 4577776654
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00037 Score=61.96 Aligned_cols=39 Identities=31% Similarity=0.394 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+|.+|||-.-|.|..++.|+..||.+|+-..-||.||++
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeL 172 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLEL 172 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEe
Confidence 799999999999999999999999999999999999854
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0034 Score=53.52 Aligned_cols=46 Identities=33% Similarity=0.434 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCC----------eEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAG----------TVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~----------~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.+..|||--||+|-.-+.++..+.. ++++.|+++.+++ -.+.|+..
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~-----~a~~N~~~ 83 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVR-----GARENLKA 83 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHH-----HHHHHHHH
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHH-----HHHHHHHh
Confidence 5679999999999888888765431 2789999999984 44556543
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0061 Score=52.77 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=27.8
Q ss_pred CEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHH
Q 024311 37 KRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRC 73 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~ 73 (269)
..+||+|||.|-.-+.+|... -..+++.|.....+..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~ 56 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAK 56 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHH
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHH
Confidence 389999999998877766644 3589999999888744
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0018 Score=57.02 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=28.0
Q ss_pred CCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHH
Q 024311 36 GKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAE 69 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~ 69 (269)
+++++|+|+|.|+||+.+|. ....+|++.|-+..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~K 102 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGK 102 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCch
Confidence 68999999999999988774 34457999998764
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0063 Score=55.20 Aligned_cols=40 Identities=13% Similarity=-0.120 Sum_probs=34.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTT 75 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~ 75 (269)
.-++||=+|-|-|...-.+.+.. .+|++.|++++|++.|.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k 111 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFI 111 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHH
Confidence 45799999999998888888775 49999999999997763
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.01 Score=52.10 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=44.9
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCce
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~ 250 (269)
.++..|++|.+=-+-- ..+..++..-.|+|+ ++|.++||--+-+|. ....|.+.++.-||-
T Consensus 119 ~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK-~~G~L~IAEV~SRf~---~~~~F~~~~~~~GF~ 179 (219)
T PF05148_consen 119 EDESVDVAVFCLSLMG-TNWPDFIREANRVLK-PGGILKIAEVKSRFE---NVKQFIKALKKLGFK 179 (219)
T ss_dssp -TT-EEEEEEES---S-S-HHHHHHHHHHHEE-EEEEEEEEEEGGG-S----HHHHHHHHHCTTEE
T ss_pred CCCceeEEEEEhhhhC-CCcHHHHHHHHheec-cCcEEEEEEecccCc---CHHHHHHHHHHCCCe
Confidence 4568999998766654 467888888889999 999999997666663 789999999999974
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0073 Score=55.01 Aligned_cols=60 Identities=22% Similarity=0.186 Sum_probs=39.7
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHH--cCCCeEEEEeCCHHHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~--~ga~~Vv~tD~~~~vl~~ 73 (269)
++.+.-+..+....+.....++.++|||+|||+|....++.. ....++++.|.++.+++.
T Consensus 12 p~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l 73 (274)
T PF09243_consen 12 PATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLEL 73 (274)
T ss_pred hHHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHH
Confidence 344444444444443333468889999999999965444332 245689999999998854
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.024 Score=51.68 Aligned_cols=47 Identities=21% Similarity=0.116 Sum_probs=39.2
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
.....+||==|||.|-+..-+|.+|. .|.+.+++-.|+ ...|..+|.
T Consensus 54 ~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Ml---l~s~fiLn~ 100 (270)
T PF07942_consen 54 DRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFML---LASNFILNH 100 (270)
T ss_pred CCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHH---HHHHHHHcc
Confidence 44678999999999999999999999 899999998887 236666664
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0023 Score=57.09 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=28.7
Q ss_pred CCCCccEEEEecccc--ccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 185 GEGGYDVILLTEIPY--SVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 185 ~~~~fDlIlasD~iY--~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
..+.+|+|.+-=++= .|+-....+..+.++|+ |+|.+++-
T Consensus 141 ~~~svD~it~IFvLSAi~pek~~~a~~nl~~llK-PGG~llfr 182 (264)
T KOG2361|consen 141 EEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLK-PGGSLLFR 182 (264)
T ss_pred CcCccceEEEEEEEeccChHHHHHHHHHHHHHhC-CCcEEEEe
Confidence 567899888633332 35566678888889999 88888764
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0035 Score=58.69 Aligned_cols=40 Identities=28% Similarity=0.171 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~ 74 (269)
++.+|||||||-|.==.=-...+.+.++++|++++.|+.+
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea 101 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEA 101 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHH
Confidence 7889999999988221222335678999999999988665
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0022 Score=57.93 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=30.2
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 32 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
..++|.++||+|||.-+--++.|....++|+++||.+.-+
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~ 92 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNR 92 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhH
Confidence 3568999999999999888887777788999999987544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0075 Score=52.76 Aligned_cols=39 Identities=15% Similarity=0.061 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCCHHHHHHH-HcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa-~~ga~~Vv~tD~~~~vl~~ 73 (269)
++...+|||||.|-+-+.+| ..+.++.++.++.+...+.
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~ 81 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDL 81 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHH
Confidence 46799999999998877655 5677789999999886644
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0033 Score=57.76 Aligned_cols=42 Identities=17% Similarity=0.423 Sum_probs=33.6
Q ss_pred CCCccEEEEeccc--cccCCHHHHHHHHHHhcCCCCeEEEEEEcc
Q 024311 186 EGGYDVILLTEIP--YSVTSLKKLYLLIKKCLRPPYGVVYLATKK 228 (269)
Q Consensus 186 ~~~fDlIlasD~i--Y~~~~~~~L~~~l~~~L~~p~g~~~va~k~ 228 (269)
.++||+|++-.++ ++++....+++.+.+.|+ |+|.++++..-
T Consensus 221 ~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~-pgG~L~lG~sE 264 (287)
T PRK10611 221 PGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK-PDGLLFAGHSE 264 (287)
T ss_pred CCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC-CCcEEEEeCcc
Confidence 4689999997765 344667889999999999 99998887543
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0016 Score=52.89 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=42.3
Q ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 31 QLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 31 ~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
...+++++|+++|+++|-.+|..+..||++|++...++...+.. ..|++.|
T Consensus 24 ~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~-een~k~n 74 (156)
T PHA01634 24 MLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKW-EEVCAYF 74 (156)
T ss_pred heeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHH-HHHhhhh
Confidence 46789999999999999999999999999999999998876443 3344444
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0013 Score=57.11 Aligned_cols=43 Identities=16% Similarity=0.400 Sum_probs=28.9
Q ss_pred CCCCccEEEEecccc--ccCCHHHHHHHHHHhcCCCCeEEEEEEcc
Q 024311 185 GEGGYDVILLTEIPY--SVTSLKKLYLLIKKCLRPPYGVVYLATKK 228 (269)
Q Consensus 185 ~~~~fDlIlasD~iY--~~~~~~~L~~~l~~~L~~p~g~~~va~k~ 228 (269)
..++||+|++-.|+- +++....+++.+.+.|+ |+|.++++..-
T Consensus 133 ~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~-pgG~L~lG~sE 177 (196)
T PF01739_consen 133 PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLK-PGGYLFLGHSE 177 (196)
T ss_dssp ----EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE-EEEEEEE-TT-
T ss_pred ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcC-CCCEEEEecCc
Confidence 456999999988763 44556679999999998 99999988543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0035 Score=58.81 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=41.5
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
...|-+|+|+-||.|-.+|.+|.+|+.+|++.|+||..+..+ .+|+++|-
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L-~eNi~LN~ 235 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYL-KENIRLNK 235 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHH-HHHHHhcC
Confidence 345899999999999999999999987799999999999543 45555553
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.018 Score=54.10 Aligned_cols=36 Identities=19% Similarity=0.065 Sum_probs=31.6
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCH
Q 024311 32 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA 68 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~ 68 (269)
...+|++||||||++|.-.-.+...|+ +|++.|..+
T Consensus 208 ~~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~ 243 (357)
T PRK11760 208 RLAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP 243 (357)
T ss_pred ccCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh
Confidence 356899999999999988888888998 999999654
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0034 Score=52.41 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=35.4
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
.+++||+|+++.++.+..+....++.+.++|+ |+|.+++.
T Consensus 41 ~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~ 80 (160)
T PLN02232 41 DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLK-PGSRVSIL 80 (160)
T ss_pred CCCCeeEEEecchhhcCCCHHHHHHHHHHHcC-cCeEEEEE
Confidence 35589999999999988899999999999999 88988765
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0044 Score=54.61 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=47.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+|.+||++|-|.|+..-....+.+.+-+++.-+|+|+ .-++.+... ...+|-.+.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~-----krmr~~gw~-------------------ek~nViil~ 155 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVL-----KRMRDWGWR-------------------EKENVIILE 155 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHH-----HHHHhcccc-------------------cccceEEEe
Confidence 58999999999999988777777777788899999999 445555432 135677778
Q ss_pred CCCCCc
Q 024311 114 GDWEEL 119 (269)
Q Consensus 114 ~dw~~~ 119 (269)
+-|++.
T Consensus 156 g~WeDv 161 (271)
T KOG1709|consen 156 GRWEDV 161 (271)
T ss_pred cchHhh
Confidence 888863
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0092 Score=48.68 Aligned_cols=56 Identities=14% Similarity=0.037 Sum_probs=39.6
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHH-----cCCCeEEEEeCCHHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-----KGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~-----~ga~~Vv~tD~~~~vl~~ 73 (269)
.+++++...........+..+|+|+|||-|.+|.+++. ....+|++.|.++..++.
T Consensus 8 ~~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~ 68 (141)
T PF13679_consen 8 RMAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVES 68 (141)
T ss_pred HHHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHH
Confidence 35555555432211234677999999999999988776 444589999999987643
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.034 Score=50.44 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=51.4
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEE
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
.+++.|++|.+=.+- -..+..++....++|+ ++|.+|||--+-+|. ....|.+.+...||...+.
T Consensus 225 ~d~svDvaV~CLSLM-gtn~~df~kEa~RiLk-~gG~l~IAEv~SRf~---dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 225 EDESVDVAVFCLSLM-GTNLADFIKEANRILK-PGGLLYIAEVKSRFS---DVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred ccCcccEEEeeHhhh-cccHHHHHHHHHHHhc-cCceEEEEehhhhcc---cHHHHHHHHHHcCCeeeeh
Confidence 566899999866555 4567788888999999 999999997766663 4566999999999865554
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.005 Score=49.58 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=35.0
Q ss_pred EEEEEcCCCCHHHHHHHHcCCC-eEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 38 RVLELSCGYGLPGIFACLKGAG-TVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 38 ~VLELGcGtGl~gl~aa~~ga~-~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|||+|||.|..++.++..+++ +|++.|.++.+. +.++.|+..
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~-----~~l~~~~~~ 44 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAY-----EILEENVKL 44 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHH-----HHHHHHHHH
Confidence 4899999999999988887764 899999999988 445555544
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0062 Score=51.44 Aligned_cols=60 Identities=28% Similarity=0.318 Sum_probs=43.4
Q ss_pred CEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecCCC
Q 024311 37 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDW 116 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw 116 (269)
..|||+.||.|.-.+..|+... +|++.|+++.-++ -++.|+..- ....+++|+.+||
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~-~Viaidid~~~~~-----~a~hNa~vY-----------------Gv~~~I~~i~gD~ 57 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD-RVIAIDIDPERLE-----CAKHNAEVY-----------------GVADNIDFICGDF 57 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHH-----HHHHHHHHT-----------------T-GGGEEEEES-H
T ss_pred CEEEEeccCcCHHHHHHHHhCC-eEEEEECCHHHHH-----HHHHHHHHc-----------------CCCCcEEEEeCCH
Confidence 3799999999999999998865 8999999998884 456666432 1235789999999
Q ss_pred CCc
Q 024311 117 EEL 119 (269)
Q Consensus 117 ~~~ 119 (269)
.+.
T Consensus 58 ~~~ 60 (163)
T PF09445_consen 58 FEL 60 (163)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.05 Score=48.77 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~ 74 (269)
+.++||-||-|.|...-.+.+.. .++|++.|+++.|++.+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a 116 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELA 116 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHH
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHH
Confidence 57899999999997776666554 47999999999999665
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.059 Score=53.34 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC---------CCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG---------AGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g---------a~~Vv~tD~~~~vl~~ 73 (269)
...+|||.+||+|...+.++... ...+++.|+++.++..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~ 78 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKR 78 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHH
Confidence 56799999999997776655321 1468999999998844
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.039 Score=56.68 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=24.3
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL 55 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~ 55 (269)
.||.-|.... .+.-.+..++|-+||+|-..|.||.
T Consensus 176 tlAaa~l~~a---~w~~~~~~l~DP~CGSGTilIEAa~ 210 (702)
T PRK11783 176 NLAAAILLRS---GWPQEGTPLLDPMCGSGTLLIEAAM 210 (702)
T ss_pred HHHHHHHHHc---CCCCCCCeEEccCCCccHHHHHHHH
Confidence 4555555432 1222578999999999998888775
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0057 Score=52.94 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=32.1
Q ss_pred CCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 36 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
...+-|||+|+|+++++||.+ |++|++...+|..-+
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~ 68 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRAR 68 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHH
Confidence 358999999999999999988 789999999998763
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.053 Score=49.72 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=32.3
Q ss_pred CEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHh
Q 024311 37 KRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~ 74 (269)
++||-||=|.|.+.-.+.+.. ..++++.|+++.|++.+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~a 116 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELA 116 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHH
Confidence 699999999998887777654 57999999999999664
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.042 Score=53.89 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=45.5
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
++-.|-.++.++. ..-.++.+||+-||||+.|+++|+ ++++|++..++++.+ +-.+.|...
T Consensus 367 ~aevLys~i~e~~----~l~~~k~llDv~CGTG~iglala~-~~~~ViGvEi~~~aV-----~dA~~nA~~ 427 (534)
T KOG2187|consen 367 AAEVLYSTIGEWA----GLPADKTLLDVCCGTGTIGLALAR-GVKRVIGVEISPDAV-----EDAEKNAQI 427 (534)
T ss_pred HHHHHHHHHHHHh----CCCCCcEEEEEeecCCceehhhhc-cccceeeeecChhhc-----chhhhcchh
Confidence 3455666666654 233668999999999999999885 567999999999988 444555543
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.081 Score=51.90 Aligned_cols=46 Identities=20% Similarity=0.275 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cC-CCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|.+|||++||.|.=+..+|. .+ ...|++.|+++.-+ .-++.|+..
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~-----~~L~~nl~r 160 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRV-----KVLHANISR 160 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHH-----HHHHHHHHH
Confidence 678999999999977755443 32 34899999999877 445666643
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.1 Score=47.82 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=35.7
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHH--------cCCCeEEEEeCCHHHHHHh
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--------KGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~--------~ga~~Vv~tD~~~~vl~~~ 74 (269)
..++++|.+.. ....+.+|+|-.||+|-.-+.+.. ....++++.|+++.++..+
T Consensus 32 ~~i~~l~~~~~----~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la 93 (311)
T PF02384_consen 32 REIVDLMVKLL----NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALA 93 (311)
T ss_dssp HHHHHHHHHHH----TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHH
T ss_pred HHHHHHHHhhh----hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHH
Confidence 34566666654 123567899999999966655554 1345899999999988654
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.013 Score=57.27 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=36.6
Q ss_pred cCCCCccEEEEeccccccCCH-HHHHHHHHHhcCCCCeEEEEEEcccc
Q 024311 184 QGEGGYDVILLTEIPYSVTSL-KKLYLLIKKCLRPPYGVVYLATKKNY 230 (269)
Q Consensus 184 ~~~~~fDlIlasD~iY~~~~~-~~L~~~l~~~L~~p~g~~~va~k~~~ 230 (269)
.....||+|=+|.|+-..... ..++-.+.|+|+ |+|.++++....|
T Consensus 177 fp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLR-pGGyfv~S~ppv~ 223 (506)
T PF03141_consen 177 FPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLR-PGGYFVLSGPPVY 223 (506)
T ss_pred CCccchhhhhcccccccchhcccceeehhhhhhc-cCceEEecCCccc
Confidence 356799999999988665444 347778899999 9999999988776
|
; GO: 0008168 methyltransferase activity |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.19 Score=37.75 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=28.8
Q ss_pred CCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcc
Q 024311 187 GGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK 228 (269)
Q Consensus 187 ~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~ 228 (269)
..||++ .+...++......++..+.+.++ |+|.+++....
T Consensus 118 ~~~d~~-~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~ 157 (257)
T COG0500 118 ASFDLV-ISLLVLHLLPPAKALRELLRVLK-PGGRLVLSDLL 157 (257)
T ss_pred CceeEE-eeeeehhcCCHHHHHHHHHHhcC-CCcEEEEEecc
Confidence 489999 55555444447788888888898 78888776544
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.14 Score=46.42 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
.+.+|||+|+|.|.+...++..++ +|++..+++.++
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~ 65 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLA 65 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHH
Confidence 477999999999999988888877 799999999887
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.0024 Score=56.01 Aligned_cols=64 Identities=23% Similarity=0.219 Sum_probs=47.1
Q ss_pred CCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE---cccccc--c------------------CcchHHHHH
Q 024311 186 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT---KKNYVG--F------------------NNAARHLRS 242 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~---k~~~fg--~------------------~~~~~~F~~ 242 (269)
+-+||+|.+-.++=...+.-.|++-|+..|++.+|++++|- -++|.- . .+.+..|.+
T Consensus 167 ~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e 246 (288)
T KOG3987|consen 167 DVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFME 246 (288)
T ss_pred CceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHhcCccHHHHHHHHHH
Confidence 34899999988888888888999999999996688888772 223321 1 113467888
Q ss_pred HhhhcCc
Q 024311 243 LVDEEGI 249 (269)
Q Consensus 243 ~~~~~g~ 249 (269)
.++..|+
T Consensus 247 ~lr~~g~ 253 (288)
T KOG3987|consen 247 LLRNCGY 253 (288)
T ss_pred HHHhcCc
Confidence 8888886
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.021 Score=51.02 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=45.6
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
.+++-|.+.|.+. ...++|+.|||+||-||-..-++...||++|++.|.-...|
T Consensus 62 RG~~KL~~ale~F----~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql 115 (245)
T COG1189 62 RGGLKLEKALEEF----ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQL 115 (245)
T ss_pred cHHHHHHHHHHhc----CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCcc
Confidence 4667777777765 46889999999999999999999999999999999966444
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.70 E-value=1.2 Score=39.06 Aligned_cols=66 Identities=20% Similarity=0.234 Sum_probs=43.8
Q ss_pred CccC-ceeeccHH--HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCH-HHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 6 PDGF-LKCWESSI--DLVNVLKHEIRDGQLSFRGKRVLELSCGYGL-PGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 6 ye~G-~~vW~as~--~La~~L~~~~~~~~~~~~~~~VLELGcGtGl-~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
|+++ .+.|+.-. .-|..|.... .-..-.|.+||=|||-+|- +|=++-..|...|.+..+++.+++.
T Consensus 46 ~~~~eYR~Wnp~RSKLaAaIl~Gl~--~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~re 115 (231)
T COG1889 46 VEGEEYREWNPRRSKLAAAILKGLK--NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRE 115 (231)
T ss_pred ecCcceeeeCcchhHHHHHHHcCcc--cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHH
Confidence 6777 89998643 3333333321 1234578999999999993 3444444555589999999988754
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.33 Score=46.23 Aligned_cols=40 Identities=23% Similarity=0.196 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhh
Q 024311 36 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTT 75 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~ 75 (269)
-.+||=||-|-|+.--.+.+.. ..+|+..|.+|.|++...
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~ 330 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELAS 330 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhh
Confidence 3599999999999988887776 679999999999997653
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.068 Score=47.52 Aligned_cols=37 Identities=16% Similarity=0.067 Sum_probs=29.2
Q ss_pred CEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHH
Q 024311 37 KRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~ 73 (269)
..+||||||.|-.-+..|+..+ ..+++.+.-..++..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~ 87 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAK 87 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHH
Confidence 5899999999977777776655 468999998777743
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.13 Score=45.01 Aligned_cols=37 Identities=30% Similarity=0.262 Sum_probs=28.4
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHc-CC-CeEEEEeCCH
Q 024311 32 LSFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSA 68 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~aa~~-ga-~~Vv~tD~~~ 68 (269)
....+.+|+||||-.|-=+-+|++. ++ .+|++.|+.|
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 4456799999999999888666654 33 2499999977
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.11 Score=45.66 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=31.6
Q ss_pred CCCCCEEEEEcCCCCHHHHHHH-HcCCC--eEEEEeCCHHHHHHh
Q 024311 33 SFRGKRVLELSCGYGLPGIFAC-LKGAG--TVHFQDLSAETIRCT 74 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa-~~ga~--~Vv~tD~~~~vl~~~ 74 (269)
...|.+.||+|+|+|.++-+++ ..|+. .+++.|.-+++++..
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~S 124 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYS 124 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHH
Confidence 5589999999999997775444 44442 349999999999654
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.19 Score=44.31 Aligned_cols=64 Identities=23% Similarity=0.373 Sum_probs=39.4
Q ss_pred CCCccEEEEeccccccCCHH--HHHHHHHHhcCCCCeEEEEE---Ecc-c-ccc-----cCcchHHHHHHhhhcCce
Q 024311 186 EGGYDVILLTEIPYSVTSLK--KLYLLIKKCLRPPYGVVYLA---TKK-N-YVG-----FNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~--~L~~~l~~~L~~p~g~~~va---~k~-~-~fg-----~~~~~~~F~~~~~~~g~~ 250 (269)
..+||+|..-=|+=+-.+-+ .+++..+..|+ |+|++.|= +.. . .|. +..+...|.+.+++.|+-
T Consensus 120 ~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~-~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~ 195 (218)
T PF05891_consen 120 EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALK-PNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLR 195 (218)
T ss_dssp TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEE-EEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-E
T ss_pred CCcEeEEEehHhhccCCHHHHHHHHHHHHHhCc-CCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCE
Confidence 46999999877776654322 34555555687 88998873 221 1 222 123679999999999973
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.1 Score=48.27 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=28.3
Q ss_pred CCEEEEEcCCCC-HHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 36 GKRVLELSCGYG-LPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 36 ~~~VLELGcGtG-l~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
..++||+|+|.. +-.|+.++ .|- ++++||+++..++ +.+.|+..|
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~-----~A~~nv~~N 149 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLE-----SARENVERN 149 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHH-----HHHHHHHHT
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHH-----HHHHHHHhc
Confidence 679999999986 44555444 565 8999999999984 445555444
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.061 Score=48.47 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=40.5
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
+..+++.+.+... ..++..|||+|+|+|..+-.++..+ ++|++.+.++...+
T Consensus 15 ~~~~~~~Iv~~~~----~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~ 66 (262)
T PF00398_consen 15 DPNIADKIVDALD----LSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAK 66 (262)
T ss_dssp HHHHHHHHHHHHT----CGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHH
T ss_pred CHHHHHHHHHhcC----CCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHH
Confidence 3455666666542 2278899999999999998888777 59999999998763
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.21 Score=49.51 Aligned_cols=38 Identities=16% Similarity=0.085 Sum_probs=30.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIR 72 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~ 72 (269)
.+..+||+|||.|-.-+..|...+ ..+++.|.....+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~ 385 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVA 385 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHH
Confidence 577999999999977777666554 57999999877663
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.23 Score=46.46 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~ 74 (269)
++..|++||||-|-=-+---..|.+.++++|+.+-.++.|
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa 156 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQA 156 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHH
Confidence 6778999999999443445567888999999988777665
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=94.38 E-value=2.6 Score=37.47 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=42.1
Q ss_pred CCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccC-cchHHHH---HHhhhcCc
Q 024311 186 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFN-NAARHLR---SLVDEEGI 249 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~-~~~~~F~---~~~~~~g~ 249 (269)
-+..|+|++ |+- .|+..+.++.-.+.+|+ ++|.++++.|.+-..+. ..-.-|- +.+++.|+
T Consensus 141 v~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk-~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~~ 205 (229)
T PF01269_consen 141 VEMVDVIFQ-DVA-QPDQARIAALNARHFLK-PGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEGF 205 (229)
T ss_dssp S--EEEEEE-E-S-STTHHHHHHHHHHHHEE-EEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTTC
T ss_pred cccccEEEe-cCC-ChHHHHHHHHHHHhhcc-CCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcCC
Confidence 448999998 887 57888889999999999 89999999888765432 2334454 44555565
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.94 Score=42.29 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=38.0
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.....+||==|||+|-++.-++..|. ++=+...+-.|+ ...+..+|...
T Consensus 148 ~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Ml---i~S~FiLN~~~ 196 (369)
T KOG2798|consen 148 ERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFML---ICSSFILNYCK 196 (369)
T ss_pred cccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHH---HHHHHHHHhhc
Confidence 34567999999999999998998888 566667766666 34788888754
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.98 Score=43.14 Aligned_cols=46 Identities=26% Similarity=0.282 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCC----------------------------------------eEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAG----------------------------------------TVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~----------------------------------------~Vv~tD~~~~vl~~~ 74 (269)
.+...+|-=||+|-.-|.||+.++. .+++.|+++.+++
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~-- 268 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE-- 268 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH--
Confidence 4468999999999999999987641 3779999999994
Q ss_pred hHHHHHHHHHH
Q 024311 75 TVPNVLANLEQ 85 (269)
Q Consensus 75 ~~~Nl~~N~~~ 85 (269)
-.+.|...
T Consensus 269 ---~Ak~NA~~ 276 (381)
T COG0116 269 ---GAKANARA 276 (381)
T ss_pred ---HHHHHHHh
Confidence 45666654
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.063 Score=51.97 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=32.3
Q ss_pred CCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 36 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
...||++|.||||+++.|++.|+..|++...-..|.+.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~ 104 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDL 104 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHH
Confidence 34789999999999999999999999999876556543
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.13 Score=43.22 Aligned_cols=52 Identities=23% Similarity=0.204 Sum_probs=36.4
Q ss_pred cHHHHHHHHhhhhhcCCCCC-CCCEEEEEcCCCCHHHHHHHHcC--CCeEEEEeCCHH
Q 024311 15 SSIDLVNVLKHEIRDGQLSF-RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAE 69 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~-~~~~VLELGcGtGl~gl~aa~~g--a~~Vv~tD~~~~ 69 (269)
|+.-|.+-+.... -... .+.+||||||++|--+-++...+ +.+|++.|..+.
T Consensus 5 a~~KL~ei~~~~~---~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 5 AAFKLYEIDEKFK---IFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHHHHHTTS---SS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHHHHHCC---CCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 4555666665541 0222 45899999999998888887777 569999999763
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.11 Score=47.49 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=49.4
Q ss_pred CCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHH
Q 024311 5 KPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIR 72 (269)
Q Consensus 5 ~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~ 72 (269)
.|+-||.+=++++.=+.++.+. .++.|+.|+=+| ---|.||++++.| +++|...|+++-+++
T Consensus 127 ~yDQgfvTpEttv~Rv~lm~~R-----GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~ 189 (354)
T COG1568 127 QYDQGFVTPETTVSRVALMYSR-----GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIK 189 (354)
T ss_pred hcccccccccceeeeeeeeccc-----cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHH
Confidence 4777777777777666666654 467999999999 7789999999876 579999999987763
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.15 E-value=1.6 Score=39.00 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=31.7
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~ 73 (269)
.++.+++||||.=||...|+.|+. .-.+|+..|+|++..+.
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~ 113 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEI 113 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHH
Confidence 457899999999999888776653 12489999999987643
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.42 Score=45.41 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=34.4
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEE
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYL 224 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~v 224 (269)
.+..||.+-+-|.+-+......+++.+.+.++ |+|+...
T Consensus 175 edn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~k-pGG~~i~ 213 (364)
T KOG1269|consen 175 EDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLK-PGGLFIV 213 (364)
T ss_pred CccccCcEEEEeecccCCcHHHHHHHHhcccC-CCceEEe
Confidence 56799999999999999999999999999988 8886553
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.2 Score=41.53 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCCHH-HHHHH-H--c-CCCeEEEEeCCHHHHH
Q 024311 35 RGKRVLELSCGYGLP-GIFAC-L--K-GAGTVHFQDLSAETIR 72 (269)
Q Consensus 35 ~~~~VLELGcGtGl~-gl~aa-~--~-ga~~Vv~tD~~~~vl~ 72 (269)
++..++|||||.|-= .+++. . . ...+.+..|++.+.|+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~ 118 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQ 118 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHH
Confidence 566899999999943 33322 1 1 1237999999999884
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.52 Score=43.13 Aligned_cols=39 Identities=18% Similarity=0.109 Sum_probs=33.4
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
.-.+-.|||+|-|||.+...+...|+ +|++.+.++.++.
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmva 94 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVA 94 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHH
Confidence 33566999999999999988888876 8999999998873
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.58 Score=40.90 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=34.0
Q ss_pred EEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 39 VLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 39 VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
|.|+||--|.+++.+...|. .+|+++|+++.-+ .+.+.|+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL-----~~A~~~i~~ 43 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPL-----EKAKENIAK 43 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHH-----HHHHHHHHH
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHH-----HHHHHHHHH
Confidence 68999999999999998875 5799999999988 455666644
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.24 Score=46.25 Aligned_cols=40 Identities=33% Similarity=0.408 Sum_probs=33.3
Q ss_pred CCCCEEEEEcCCC-CHHHHHHHH-cCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGt-Gl~gl~aa~-~ga~~Vv~tD~~~~vl~~ 73 (269)
-.|.+||=+|||+ |+..+++|+ .||++|+++|..+.-|+.
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~ 209 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLEL 209 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHH
Confidence 3788999999996 888866654 799999999999877644
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.45 Score=42.88 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=31.1
Q ss_pred EEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 38 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 38 ~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
+|||+=||+|.-|+.++..|+ +|++.+.++.+.
T Consensus 91 ~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~va 123 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVA 123 (250)
T ss_pred EEEECCCCccHHHHHHHHcCC-EEEEEECCHHHH
Confidence 899999999999999999999 599999999776
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=91.87 E-value=5 Score=37.19 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=26.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHH---cCCCeEEEEeCCHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACL---KGAGTVHFQDLSAETI 71 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~---~ga~~Vv~tD~~~~vl 71 (269)
+..+|||+-||.|--=+-+.. ..+.+|.+-||++.-+
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv 174 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINV 174 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHH
Confidence 456999999999944333222 2246899999998544
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=91.54 E-value=2.6 Score=37.00 Aligned_cols=131 Identities=17% Similarity=0.151 Sum_probs=66.1
Q ss_pred CceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHH----Hc-CCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 9 FLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC----LK-GAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 9 G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa----~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
|..++..-.+++.|-.-. ..++...|+|+|.=.|-..+..| .. +..+|+..|++-.-.
T Consensus 11 G~pi~q~P~Dm~~~qeli-----~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~------------ 73 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELI-----WELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH------------ 73 (206)
T ss_dssp TEEESS-HHHHHHHHHHH-----HHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT-------------
T ss_pred CeehhcCHHHHHHHHHHH-----HHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh------------
Confidence 667777888887765432 23467799999999986665433 23 446999999953211
Q ss_pred HHhhhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCc
Q 024311 84 EQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSS 163 (269)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 163 (269)
++...+.+ .+.+++++++||..+...+-+. .
T Consensus 74 --~~~a~e~h----------p~~~rI~~i~Gds~d~~~~~~v-~------------------------------------ 104 (206)
T PF04989_consen 74 --NRKAIESH----------PMSPRITFIQGDSIDPEIVDQV-R------------------------------------ 104 (206)
T ss_dssp ---S-GGGG--------------TTEEEEES-SSSTHHHHTS-G------------------------------------
T ss_pred --chHHHhhc----------cccCceEEEECCCCCHHHHHHH-H------------------------------------
Confidence 11111111 0236889999987765432110 0
Q ss_pred ccccccccCchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 164 SRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 164 ~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
.+ ....+..+||- |.=+..++.-.-++....+++ +++.+.|.
T Consensus 105 -----~~-------------~~~~~~vlVil-Ds~H~~~hvl~eL~~y~plv~-~G~Y~IVe 146 (206)
T PF04989_consen 105 -----EL-------------ASPPHPVLVIL-DSSHTHEHVLAELEAYAPLVS-PGSYLIVE 146 (206)
T ss_dssp -----SS-----------------SSEEEEE-SS----SSHHHHHHHHHHT---TT-EEEET
T ss_pred -----Hh-------------hccCCceEEEE-CCCccHHHHHHHHHHhCccCC-CCCEEEEE
Confidence 00 12235556665 877777888888888888888 77776653
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.81 Score=42.31 Aligned_cols=40 Identities=13% Similarity=0.007 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC--CCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g--a~~Vv~tD~~~~vl~~~ 74 (269)
.|..+||.+||.|--+..++... ..+|++.|.++++++.+
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~a 60 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAA 60 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHH
Confidence 56799999999998887777653 25899999999999553
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=90.73 E-value=0.51 Score=42.87 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=34.4
Q ss_pred EEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 38 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 38 ~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
+|+||-||+|..++.+...|.+.|++.|+++..+ ...+.|.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~-----~~~~~N~ 42 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAA-----ETYEANF 42 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHH-----HHHHHhC
Confidence 6999999999888888888988889999999887 4455554
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=90.21 E-value=4.7 Score=36.93 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=23.9
Q ss_pred CCEEEEEcCCC-CHHHHHHHHc-CC-CeEEEEeCCHHHHHH
Q 024311 36 GKRVLELSCGY-GLPGIFACLK-GA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 36 ~~~VLELGcGt-Gl~gl~aa~~-ga-~~Vv~tD~~~~vl~~ 73 (269)
.++|+=||||. -+.+|.++.. +. ..|+..|++++.++.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~ 161 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANEL 161 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHH
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHH
Confidence 45999999995 7888887754 32 268999999998754
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.89 Score=38.69 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=40.0
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+=...|+++|.... .-+|..|||--||+|-++++|..+|. +.++.|++++-.+.
T Consensus 175 ~kP~~l~~~lI~~~-----t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~ 228 (231)
T PF01555_consen 175 QKPVELIERLIKAS-----TNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEI 228 (231)
T ss_dssp -S-HHHHHHHHHHH-----S-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHH
T ss_pred cCCHHHHHHHHHhh-----hccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence 33467777777653 34688999999999999999999987 89999999987744
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=89.92 E-value=0.15 Score=38.95 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=20.9
Q ss_pred CCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEE
Q 024311 187 GGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYL 224 (269)
Q Consensus 187 ~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~v 224 (269)
.+||+|+- |--+..+....-++.+...|+ |+|++++
T Consensus 68 ~~~dli~i-Dg~H~~~~~~~dl~~~~~~l~-~ggviv~ 103 (106)
T PF13578_consen 68 GPIDLIFI-DGDHSYEAVLRDLENALPRLA-PGGVIVF 103 (106)
T ss_dssp --EEEEEE-ES---HHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred CCEEEEEE-CCCCCHHHHHHHHHHHHHHcC-CCeEEEE
Confidence 58999987 665544445555555666677 7887764
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.90 E-value=4.5 Score=38.27 Aligned_cols=46 Identities=28% Similarity=0.330 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCCCHHHHH-HHHcC--CCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIF-ACLKG--AGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~-aa~~g--a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|.+|||+.|+.|-=... |+... ...|++.|.++.=+ .-+..|+..
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl-----~~l~~nl~R 204 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRL-----KRLRENLKR 204 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHH-----HHHHHHHHH
Confidence 678999999999854433 33322 23579999999876 456666643
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.83 E-value=10 Score=34.85 Aligned_cols=37 Identities=19% Similarity=0.095 Sum_probs=29.4
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcC--CCeEEEEeCCHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAE 69 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~g--a~~Vv~tD~~~~ 69 (269)
...|.+|||-|.|+|-++.+.++.- -.+++--|+.+.
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~ 141 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHET 141 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHH
Confidence 3478899999999999998877642 258998999664
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=88.55 E-value=0.8 Score=43.74 Aligned_cols=47 Identities=30% Similarity=0.358 Sum_probs=35.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
++.+|||.=||||+=||-.++- +..+|++.|+|++.+ +-++.|+..|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~-----~~i~~N~~~N 97 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAV-----ELIKRNLELN 97 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHH-----HHHHHHHHHC
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHH-----HHHHHhHhhc
Confidence 3469999999999999887764 668999999999988 4456666554
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.06 E-value=2.1 Score=41.99 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=31.8
Q ss_pred CEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 024311 37 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~ 74 (269)
.++|.||||.--...-.-.-|...|+.+|+++-++...
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m 87 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAM 87 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHH
Confidence 49999999999777777777888999999999877443
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.49 E-value=2.2 Score=38.86 Aligned_cols=52 Identities=21% Similarity=0.132 Sum_probs=42.5
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~ 74 (269)
+.|.+.|... ....|-.|||--||+|-++++|.++|- +.++.|++++-.+.+
T Consensus 195 ~~L~erlI~~-----~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a 246 (284)
T PRK11524 195 EALLKRIILA-----SSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMG 246 (284)
T ss_pred HHHHHHHHHH-----hCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHH
Confidence 5566666554 345788999999999999999999987 899999999887654
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.38 E-value=2.9 Score=37.64 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=33.9
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCH--HHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGL--PGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl--~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
.|++.|.+.. ++..-++.++||+|-|.-- |=|-.-.+|- +.++||+++..++.+ ..++..|
T Consensus 63 ~laDLL~s~~--g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA-~~ii~~N 125 (292)
T COG3129 63 HLADLLASTS--GQIPGKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSA-KAIISAN 125 (292)
T ss_pred HHHHHHHhcC--CCCCcCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHH-HHHHHcC
Confidence 3444444432 2223355677888776541 1111223566 799999999988543 3455544
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.06 E-value=1.1 Score=42.50 Aligned_cols=46 Identities=30% Similarity=0.401 Sum_probs=38.4
Q ss_pred CCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 36 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
.++|+|-=||||+=||-.+.- +..+|++.|+||+..+.. ..|+++|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Aveli-k~Nv~~N 99 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELI-KENVRLN 99 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHH-HHHHHhc
Confidence 789999999999999987764 444899999999999654 5777777
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=87.03 E-value=1.3 Score=35.04 Aligned_cols=49 Identities=20% Similarity=0.145 Sum_probs=30.7
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeC
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL 66 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~ 66 (269)
+.+|.||...-+.....-+...-.|||||.|++--++.+-|. +=.+.|.
T Consensus 40 laIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~ 88 (112)
T PF07757_consen 40 LAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY-PGWGIDA 88 (112)
T ss_pred HHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC-Ccccccc
Confidence 345666655432211122345799999999999977777776 4455554
|
; GO: 0008168 methyltransferase activity |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=86.17 E-value=3.5 Score=36.43 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=45.3
Q ss_pred cCCCCccEEEEecccccc----------------CCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhc
Q 024311 184 QGEGGYDVILLTEIPYSV----------------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEE 247 (269)
Q Consensus 184 ~~~~~fDlIlasD~iY~~----------------~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~ 247 (269)
..++++|+||. |..|.. +.+...+..+.++|+ |+|.+++.+..+ ....|...+++.
T Consensus 16 lpd~SVDLIiT-DPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLK-pgg~l~if~~~~------~~~~~~~al~~~ 87 (227)
T PRK13699 16 FPDNAVDFILT-DPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLK-KDALMVSFYGWN------RVDRFMAAWKNA 87 (227)
T ss_pred CCccccceEEe-CCCcccccccCCCcccccccHHHHHHHHHHHHHHHcC-CCCEEEEEeccc------cHHHHHHHHHHC
Confidence 35678999998 888852 113456677788999 788777643322 245688889999
Q ss_pred Cc-eeEEEEeee
Q 024311 248 GI-FGAHLIKEM 258 (269)
Q Consensus 248 g~-~~~~~~~~~ 258 (269)
|| +.-.++|.-
T Consensus 88 GF~l~~~IiW~K 99 (227)
T PRK13699 88 GFSVVGHLVFTK 99 (227)
T ss_pred CCEEeeEEEEEC
Confidence 97 445566753
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=85.52 E-value=1.8 Score=39.12 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=34.2
Q ss_pred EEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 38 RVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 38 ~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
+|+||-||+|..++.+...|..-|.+.|+++... ...+.|.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~-----~~y~~N~ 42 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDAC-----ETYKANF 42 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHH-----HHHHHHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHH-----Hhhhhcc
Confidence 7999999999999988889987899999999876 5556665
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=85.09 E-value=1.5 Score=38.75 Aligned_cols=51 Identities=18% Similarity=0.126 Sum_probs=34.3
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.|+++|...+.. . ...+++|+=||+|.+++.+... ..+|++.|+++.+...
T Consensus 7 ~l~~~I~~~ip~---~-~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~ 57 (260)
T PF02086_consen 7 KLAKWIIELIPK---N-KHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINF 57 (260)
T ss_dssp GGHHHHHHHS-S-----S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHH
T ss_pred HHHHHHHHHcCC---C-CCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHH
Confidence 366777776521 1 6789999999999888877654 4589999999988754
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.04 E-value=1.3 Score=41.22 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=50.8
Q ss_pred ceeeccHHHHHHHH--hhhhhcCCCCCCCCEEEEEcCCCCHHHH-HHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 10 LKCWESSIDLVNVL--KHEIRDGQLSFRGKRVLELSCGYGLPGI-FACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 10 ~~vW~as~~La~~L--~~~~~~~~~~~~~~~VLELGcGtGl~gl-~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
..+|++...|=.+= .+..+-.+....+..|.||=||.|...+ .+-.+||+.|++.|.||..+ +.+++|+..|
T Consensus 167 ~~~~d~t~~MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~sv-----EaLrR~~~~N 241 (351)
T KOG1227|consen 167 TQIWDPTKTMFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSV-----EALRRNAEAN 241 (351)
T ss_pred EEEechhhhhhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHH-----HHHHHHHHhc
Confidence 45788777765532 1111223445677899999999998887 77788999999999999998 4445554443
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=83.73 E-value=4.6 Score=35.66 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=39.9
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
..|.+.+... ..-+|..|||--||+|-.+++|.+.|. +.++.|++++-.+.
T Consensus 150 ~~l~~~~i~~-----~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~ 200 (227)
T PRK13699 150 VTSLQPLIES-----FTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRA 200 (227)
T ss_pred HHHHHHHHHH-----hCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHH
Confidence 3455555443 233788999999999999999999887 89999999987754
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.00 E-value=4.3 Score=36.95 Aligned_cols=65 Identities=14% Similarity=0.230 Sum_probs=42.4
Q ss_pred CCCCccEEEEecccccc-----------------CCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhc
Q 024311 185 GEGGYDVILLTEIPYSV-----------------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEE 247 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~-----------------~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~ 247 (269)
..++||+|++ |..|.. ..+..++..+.++|+ |+|.+||.+...+ . .++..+.+.
T Consensus 24 ~~~siDlIit-DPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK-~~G~i~i~~~~~~------~-~~~~~~~~~ 94 (284)
T PRK11524 24 PSESVDLIFA-DPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLK-KQGTMYIMNSTEN------M-PFIDLYCRK 94 (284)
T ss_pred ccCcccEEEE-CCCcccccccccccccccHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcCchh------h-hHHHHHHhc
Confidence 4568999998 777753 112457788888998 8999888654322 1 244455566
Q ss_pred Cc-eeEEEEeee
Q 024311 248 GI-FGAHLIKEM 258 (269)
Q Consensus 248 g~-~~~~~~~~~ 258 (269)
|+ +.-.++|..
T Consensus 95 ~f~~~~~iiW~k 106 (284)
T PRK11524 95 LFTIKSRIVWSY 106 (284)
T ss_pred CcceEEEEEEEe
Confidence 75 556667764
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=82.45 E-value=3.7 Score=33.27 Aligned_cols=45 Identities=13% Similarity=0.190 Sum_probs=29.2
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCC-HHHHHHHHcCCCeEEEEeCCHH
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYG-LPGIFACLKGAGTVHFQDLSAE 69 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtG-l~gl~aa~~ga~~Vv~tD~~~~ 69 (269)
..+|+|+..+. +..+|+|+|-|-= -.+..+...|. .|++||.++.
T Consensus 2 ~~~a~~ia~~~-------~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~ 47 (127)
T PF03686_consen 2 VDFAEYIARLN-------NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR 47 (127)
T ss_dssp HHHHHHHHHHS--------SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S
T ss_pred chHHHHHHHhC-------CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc
Confidence 46889998763 2339999999974 34455666776 8999999874
|
; PDB: 2K4M_A. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=82.22 E-value=2.6 Score=39.49 Aligned_cols=39 Identities=33% Similarity=0.385 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCC-CHHHHHHH-HcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGt-Gl~gl~aa-~~ga~~Vv~tD~~~~vl~~ 73 (269)
.+.+|+=+|||+ ||+.+.++ ..|+.+|+++|.+++=+++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~ 208 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLEL 208 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHH
Confidence 444999999997 99886544 5789999999999986643
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.17 E-value=4.4 Score=38.63 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=27.4
Q ss_pred CCCccEEEEeccccccCCHHHHHHHHHH---hcCCCCeEEEEEE
Q 024311 186 EGGYDVILLTEIPYSVTSLKKLYLLIKK---CLRPPYGVVYLAT 226 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~~L~~~l~~---~L~~p~g~~~va~ 226 (269)
...|++|+.+|=+-....-.++...|++ ++. |+|.++|..
T Consensus 183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~-~gg~lVivE 225 (484)
T COG5459 183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLA-PGGHLVIVE 225 (484)
T ss_pred cceeehhhhhhhhccccCcchHHHHHHHHHHhcc-CCCeEEEEe
Confidence 3478999988877766555555555555 455 788887774
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=80.29 E-value=4 Score=36.36 Aligned_cols=53 Identities=13% Similarity=0.040 Sum_probs=29.9
Q ss_pred HHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHH--H-------cCCCeEEEEeCCHHHH
Q 024311 19 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC--L-------KGAGTVHFQDLSAETI 71 (269)
Q Consensus 19 La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa--~-------~ga~~Vv~tD~~~~vl 71 (269)
+|.|+....+.........+|+|+|+|.|.+..-+. . ....++++.+.+|.+.
T Consensus 2 ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~ 63 (252)
T PF02636_consen 2 IARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLR 63 (252)
T ss_dssp HHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCH
T ss_pred hHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHH
Confidence 566665544322112234699999999997663222 1 1234899999998654
|
; PDB: 4F3N_A 1ZKD_B. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 3e-10
Identities = 28/121 (23%), Positives = 38/121 (31%), Gaps = 12/121 (9%)
Query: 10 LKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAE 69
W + L + GK V EL G GL I A L GA V D
Sbjct: 58 SHVWSGAR----ALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPD- 112
Query: 70 TIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRND 129
P +L +LE + SS T R + + + + L + R
Sbjct: 113 -------PEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQ 165
Query: 130 V 130
V
Sbjct: 166 V 166
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 4e-04
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 26/87 (29%)
Query: 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ 93
F K VL+L CG+G I+A GA V DLS L +A+ + +
Sbjct: 43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERM------------LTEAKRKTT-- 88
Query: 94 PESSLTPSRQTLAPSVHFYAGDWEELP 120
+P V + E++
Sbjct: 89 ------------SPVVCYEQKAIEDIA 103
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 5e-04
Identities = 11/90 (12%), Positives = 22/90 (24%), Gaps = 22/90 (24%)
Query: 31 QLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQ 90
+ +++ G G I + ++ D S E A +
Sbjct: 39 RFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHM------------NEIALKNI 86
Query: 91 SRQPESSLTPSRQTLAPSVHFYAGDWEELP 120
+ L + GD +P
Sbjct: 87 ADAN----------LNDRIQIVQGDVHNIP 106
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 8e-04
Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 26/88 (29%)
Query: 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR 92
G R+++L CG+G +A GA V DLS + L +AR
Sbjct: 41 EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEK------------MLARARAAGPD 88
Query: 93 QPESSLTPSRQTLAPSVHFYAGDWEELP 120
+ + D ++L
Sbjct: 89 --------------TGITYERADLDKLH 102
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 269 | |||
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.82 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.51 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.5 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.47 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.46 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.46 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.45 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.45 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.44 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.43 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.41 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.41 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.41 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.4 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.4 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.4 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.4 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.4 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.39 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.39 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.38 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.38 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.37 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.37 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.36 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.36 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.35 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.35 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.35 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.35 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.35 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.35 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.35 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.34 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.34 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.34 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.33 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.33 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.33 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.33 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.33 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.33 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.32 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.32 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.31 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.31 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.3 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.3 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.3 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.3 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.3 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.3 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.29 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.29 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.29 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.29 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.29 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.28 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.27 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.27 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.27 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.25 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.25 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.25 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.25 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.25 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.24 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.24 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.24 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.24 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.24 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.23 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.23 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.23 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.22 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.22 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.22 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.22 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.22 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.21 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.21 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.21 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.2 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.2 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.2 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.2 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.2 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.19 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.19 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.19 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.19 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.18 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.18 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.18 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.17 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.17 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.17 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.16 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.16 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.15 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.15 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.15 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.15 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.14 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.13 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.12 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.12 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.11 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.11 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.1 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.1 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.1 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.1 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.1 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.09 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.09 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.09 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.08 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.08 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.08 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.07 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.07 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.07 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.07 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.07 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.07 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.06 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.06 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.06 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.06 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.05 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.04 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.04 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.04 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.04 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.04 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.04 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.03 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.02 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.02 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.01 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.01 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.0 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.0 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.0 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.0 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.99 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.99 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.98 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.98 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.98 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.98 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.98 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.97 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.97 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.97 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.96 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.96 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.95 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.94 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 98.94 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.94 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.94 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.94 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.93 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.93 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.93 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 98.93 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.93 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.93 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.92 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.92 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.92 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.91 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.9 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.9 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 98.9 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.89 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.89 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.89 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.89 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.88 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.88 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.88 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.87 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.86 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.85 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.85 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.85 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.84 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.84 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 98.84 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.83 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.83 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.82 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.81 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.81 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.81 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 98.79 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.79 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.78 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.78 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.78 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.78 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.75 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.74 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.74 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.74 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.74 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.74 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.74 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.73 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.73 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.72 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.72 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.71 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.71 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 98.7 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.7 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.69 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.68 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.67 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.67 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.66 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.65 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.64 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.62 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.62 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.61 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.6 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.59 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.57 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.56 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.56 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.55 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.55 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.54 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.52 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.49 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.48 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.47 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.47 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.47 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.46 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.43 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.43 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.43 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.42 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.39 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.37 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.35 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.34 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.32 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.3 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.25 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.25 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.24 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.24 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.18 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.15 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.14 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.06 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.02 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.01 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 97.96 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 97.94 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.9 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 97.88 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.84 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.83 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.81 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.78 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.76 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.69 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.65 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 97.65 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.59 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.58 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.58 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.51 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.44 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.36 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.26 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.16 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 96.8 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.58 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.55 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.0 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 95.91 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 95.8 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.43 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 95.26 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 95.25 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 95.02 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 94.72 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 94.7 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 94.51 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 93.88 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 93.57 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 93.54 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 93.31 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 92.48 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 90.81 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 90.79 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 90.16 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 90.09 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 89.01 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 88.88 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 88.51 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 88.29 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 88.03 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 86.62 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 86.56 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 86.51 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 84.36 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 83.62 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 80.8 |
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-19 Score=160.51 Aligned_cols=171 Identities=21% Similarity=0.284 Sum_probs=113.6
Q ss_pred cCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeC-CHHHHHHhhHHHHHHHHHHh
Q 024311 8 GFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL-SAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 8 ~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~-~~~vl~~~~~~Nl~~N~~~~ 86 (269)
.|+.+|+++..|++++.... ...++++|||||||+|..++.++..|+.+|+++|+ ++++++. ++.|...|
T Consensus 56 ~g~~~~~~~~~l~~~l~~~~----~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~-----a~~n~~~N 126 (281)
T 3bzb_A 56 WTSHVWSGARALADTLCWQP----ELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNS-----LESNIREH 126 (281)
T ss_dssp ------CHHHHHHHHHHHCG----GGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHH-----HHHHHHTT
T ss_pred CCceeecHHHHHHHHHHhcc----hhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHH-----HHHHHHHh
Confidence 47889999999999998864 23578899999999999999999988879999999 8999844 44444322
Q ss_pred hhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccc
Q 024311 87 RERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRR 166 (269)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 166 (269)
....... . .....++++..++|.+......
T Consensus 127 ~~~~~~~-----~---~~~~~~v~~~~~~~~~~~~~~~------------------------------------------ 156 (281)
T 3bzb_A 127 TANSCSS-----E---TVKRASPKVVPYRWGDSPDSLQ------------------------------------------ 156 (281)
T ss_dssp CC------------------CCCEEEECCTTSCTHHHH------------------------------------------
T ss_pred hhhhccc-----c---cCCCCCeEEEEecCCCccHHHH------------------------------------------
Confidence 1000000 0 0001357777788886321000
Q ss_pred cccccCchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcC---C-CCeEEEEEEcccccccCcchHHHHH
Q 024311 167 SRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLR---P-PYGVVYLATKKNYVGFNNAARHLRS 242 (269)
Q Consensus 167 ~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~---~-p~g~~~va~k~~~fg~~~~~~~F~~ 242 (269)
. .....+||+|+++|++|+...++.+++.+.++|+ + ++|++++....++.........|++
T Consensus 157 --------------~-~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~~~~~~~ 221 (281)
T 3bzb_A 157 --------------R-CTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAERDLAFFR 221 (281)
T ss_dssp --------------H-HHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------CTHHHH
T ss_pred --------------h-hccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchhHHHHHH
Confidence 0 0023589999999999999999999999999998 4 3899888766654433445789999
Q ss_pred HhhhcC-ceeE
Q 024311 243 LVDEEG-IFGA 252 (269)
Q Consensus 243 ~~~~~g-~~~~ 252 (269)
.+++.| |-..
T Consensus 222 ~l~~~G~f~v~ 232 (281)
T 3bzb_A 222 LVNADGALIAE 232 (281)
T ss_dssp HHHHSTTEEEE
T ss_pred HHHhcCCEEEE
Confidence 999999 6433
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-13 Score=117.54 Aligned_cols=134 Identities=20% Similarity=0.285 Sum_probs=99.0
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
..++++|||+|||+|..+..++..++.+|+++|+++.+++. .+.+.. ..++.+.
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~-----a~~~~~---------------------~~~~~~~ 95 (253)
T 3g5l_A 42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTE-----AKRKTT---------------------SPVVCYE 95 (253)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHH-----HHHHCC---------------------CTTEEEE
T ss_pred ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHH-----HHHhhc---------------------cCCeEEE
Confidence 34789999999999999999888888799999999998843 222210 1345665
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|....+ ...++||+|
T Consensus 96 ~~d~~~~~---------------------------------------------------------------~~~~~fD~v 112 (253)
T 3g5l_A 96 QKAIEDIA---------------------------------------------------------------IEPDAYNVV 112 (253)
T ss_dssp ECCGGGCC---------------------------------------------------------------CCTTCEEEE
T ss_pred EcchhhCC---------------------------------------------------------------CCCCCeEEE
Confidence 55543321 134689999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccc-------------------------ccc--------------
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-------------------------VGF-------------- 233 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~-------------------------fg~-------------- 233 (269)
+++.++++......+++.+.++|+ |+|++++.....+ |..
T Consensus 113 ~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (253)
T 3g5l_A 113 LSSLALHYIASFDDICKKVYINLK-SSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQK 191 (253)
T ss_dssp EEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEE
T ss_pred EEchhhhhhhhHHHHHHHHHHHcC-CCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCcc
Confidence 999999999999999999999999 8999998732211 100
Q ss_pred -CcchHHHHHHhhhcCceeEEEEe
Q 024311 234 -NNAARHLRSLVDEEGIFGAHLIK 256 (269)
Q Consensus 234 -~~~~~~F~~~~~~~g~~~~~~~~ 256 (269)
..+..++.+.+++.||-..++..
T Consensus 192 ~~~t~~~~~~~l~~aGF~~~~~~e 215 (253)
T 3g5l_A 192 YHRTVTTYIQTLLKNGFQINSVIE 215 (253)
T ss_dssp ECCCHHHHHHHHHHTTEEEEEEEC
T ss_pred EecCHHHHHHHHHHcCCeeeeeec
Confidence 01678899999999986555543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.50 E-value=4e-13 Score=113.35 Aligned_cols=147 Identities=18% Similarity=0.267 Sum_probs=102.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||+|||+|..+..++.....+|+++|+++.+++. .+.|+... ...+++++..+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~-----a~~~~~~~-----------------~~~~~~~~~~~ 100 (219)
T 3dlc_A 43 TAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEI-----ALKNIADA-----------------NLNDRIQIVQG 100 (219)
T ss_dssp CEEEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHH-----HHHHHHHT-----------------TCTTTEEEEEC
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHH-----HHHHHHhc-----------------cccCceEEEEc
Confidence 334999999999999988877643489999999999844 34444321 01235666666
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|....+ ...++||+|++
T Consensus 101 d~~~~~---------------------------------------------------------------~~~~~~D~v~~ 117 (219)
T 3dlc_A 101 DVHNIP---------------------------------------------------------------IEDNYADLIVS 117 (219)
T ss_dssp BTTBCS---------------------------------------------------------------SCTTCEEEEEE
T ss_pred CHHHCC---------------------------------------------------------------CCcccccEEEE
Confidence 654321 13468999999
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc------------------------ccCcchHHHHHHhhhcCce
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV------------------------GFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f------------------------g~~~~~~~F~~~~~~~g~~ 250 (269)
..++++......+++.+.++|+ |+|++++....... .......++.+.+++.||-
T Consensus 118 ~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 196 (219)
T 3dlc_A 118 RGSVFFWEDVATAFREIYRILK-SGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGIS 196 (219)
T ss_dssp ESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCS
T ss_pred CchHhhccCHHHHHHHHHHhCC-CCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999 89999987411000 0001347788999999986
Q ss_pred eEEEEeeecCcceEEEEeC
Q 024311 251 GAHLIKEMTDRDIWKFFLK 269 (269)
Q Consensus 251 ~~~~~~~~~~~~i~~~~~~ 269 (269)
..++. ..+...|-.++|
T Consensus 197 ~v~~~--~~~~~~~~~~~k 213 (219)
T 3dlc_A 197 SYEII--LGDEGFWIIISK 213 (219)
T ss_dssp SEEEE--EETTEEEEEEBC
T ss_pred eEEEE--ecCCceEEEEec
Confidence 55553 234455666654
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.7e-13 Score=111.10 Aligned_cols=142 Identities=18% Similarity=0.249 Sum_probs=96.7
Q ss_pred CCCCCCccC------ceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 024311 1 MISSKPDGF------LKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 1 ~~~g~ye~G------~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~ 74 (269)
+|.|+|.|- ...++.+-.+.+.+.+.... ....++.+|||||||+|..++.++..++.+|++.|+++++++
T Consensus 5 ii~g~~~g~~l~~~~~~~rp~~~~~~~~l~~~l~~-~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~-- 81 (189)
T 3p9n_A 5 IIGGVAGGRRIAVPPRGTRPTTDRVRESLFNIVTA-RRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAA-- 81 (189)
T ss_dssp CCSSTTTTCEEECCSCCC---CHHHHHHHHHHHHH-HSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHH--
T ss_pred EEeeccCCcEecCCCCCCccCcHHHHHHHHHHHHh-ccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHH--
Confidence 467777753 34566666666666554421 112578999999999999999877788889999999999984
Q ss_pred hHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCC
Q 024311 75 TVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQD 154 (269)
Q Consensus 75 ~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~ 154 (269)
..+.|+..+. . .++++..+|+.+...
T Consensus 82 ---~a~~~~~~~~-----------------~-~~v~~~~~d~~~~~~--------------------------------- 107 (189)
T 3p9n_A 82 ---VIARNIEALG-----------------L-SGATLRRGAVAAVVA--------------------------------- 107 (189)
T ss_dssp ---HHHHHHHHHT-----------------C-SCEEEEESCHHHHHH---------------------------------
T ss_pred ---HHHHHHHHcC-----------------C-CceEEEEccHHHHHh---------------------------------
Confidence 4455554431 1 356776666543210
Q ss_pred CcccccCCcccccccccCchhhhhhcccccCCCCccEEEEecccccc--CCHHHHHHHHHH--hcCCCCeEEEEEEccc
Q 024311 155 GSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKK--CLRPPYGVVYLATKKN 229 (269)
Q Consensus 155 ~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~--~~~~~L~~~l~~--~L~~p~g~~~va~k~~ 229 (269)
.....+||+|++ |..|.. ...+.+++.+.+ +|+ |+|++++.+...
T Consensus 108 ----------------------------~~~~~~fD~i~~-~~p~~~~~~~~~~~l~~~~~~~~L~-pgG~l~~~~~~~ 156 (189)
T 3p9n_A 108 ----------------------------AGTTSPVDLVLA-DPPYNVDSADVDAILAALGTNGWTR-EGTVAVVERATT 156 (189)
T ss_dssp ----------------------------HCCSSCCSEEEE-CCCTTSCHHHHHHHHHHHHHSSSCC-TTCEEEEEEETT
T ss_pred ----------------------------hccCCCccEEEE-CCCCCcchhhHHHHHHHHHhcCccC-CCeEEEEEecCC
Confidence 012458999998 455655 567888899988 898 899999886553
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.46 E-value=4e-12 Score=108.02 Aligned_cols=145 Identities=14% Similarity=0.181 Sum_probs=100.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC--CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g--a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.+.+|||+|||+|..+..++..+ ..+|++.|+++.+++. .+.+...+. . +++.+.
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~~-----------------~-~~~~~~ 93 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNY-----AWEKVNKLG-----------------L-KNVEVL 93 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHH-----HHHHHHHHT-----------------C-TTEEEE
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHH-----HHHHHHHcC-----------------C-CcEEEE
Confidence 57899999999999998877764 3489999999999844 344443220 1 246666
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|....+ ...++||+|
T Consensus 94 ~~d~~~~~---------------------------------------------------------------~~~~~fD~v 110 (219)
T 3dh0_A 94 KSEENKIP---------------------------------------------------------------LPDNTVDFI 110 (219)
T ss_dssp ECBTTBCS---------------------------------------------------------------SCSSCEEEE
T ss_pred ecccccCC---------------------------------------------------------------CCCCCeeEE
Confidence 56544321 134589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccc-------cCcchHHHHHHhhhcCceeEEEEeeecCcceEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG-------FNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWK 265 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg-------~~~~~~~F~~~~~~~g~~~~~~~~~~~~~~i~~ 265 (269)
+++.++++......+++.+.++|+ |+|++++..-..... ..-...++.+.+++.||-..++ .+.......-
T Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~-~~~~~~~~~~ 188 (219)
T 3dh0_A 111 FMAFTFHELSEPLKFLEELKRVAK-PFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRV-VEVGKYCFGV 188 (219)
T ss_dssp EEESCGGGCSSHHHHHHHHHHHEE-EEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEE-EEETTTEEEE
T ss_pred EeehhhhhcCCHHHHHHHHHHHhC-CCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEE-EeeCCceEEE
Confidence 999999999999999999999999 899988874221100 0114688999999999754444 4444443333
Q ss_pred EE
Q 024311 266 FF 267 (269)
Q Consensus 266 ~~ 267 (269)
+.
T Consensus 189 ~~ 190 (219)
T 3dh0_A 189 YA 190 (219)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-12 Score=113.95 Aligned_cols=134 Identities=16% Similarity=0.168 Sum_probs=98.0
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
..+.+|||+|||+|..++.++..+..+|+++|+++.+++. .+.|.... .+.+++++..
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~v~~~~ 102 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDI-----FNRNARQS-----------------GLQNRVTGIV 102 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHH-----HHHHHHHT-----------------TCTTTEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHH-----HHHHHHHc-----------------CCCcCcEEEE
Confidence 4688999999999999998888766699999999999844 34444321 1234577777
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|+.+.+ ...++||+|+
T Consensus 103 ~d~~~~~---------------------------------------------------------------~~~~~fD~i~ 119 (267)
T 3kkz_A 103 GSMDDLP---------------------------------------------------------------FRNEELDLIW 119 (267)
T ss_dssp CCTTSCC---------------------------------------------------------------CCTTCEEEEE
T ss_pred cChhhCC---------------------------------------------------------------CCCCCEEEEE
Confidence 7765432 1345899999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc---------------ccCcchHHHHHHhhhcCceeEEE
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV---------------GFNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f---------------g~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
+..++++. ..+.+++.+.++|+ |+|++++....... ..-.+...+.+.+++.||...++
T Consensus 120 ~~~~~~~~-~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~ 193 (267)
T 3kkz_A 120 SEGAIYNI-GFERGLNEWRKYLK-KGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHKAGYLPVAT 193 (267)
T ss_dssp ESSCGGGT-CHHHHHHHHGGGEE-EEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHHHHTTEEEEEE
T ss_pred EcCCceec-CHHHHHHHHHHHcC-CCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 99999998 78999999999999 89999887532110 01124567778899999754444
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-12 Score=111.38 Aligned_cols=150 Identities=16% Similarity=0.144 Sum_probs=103.5
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccC
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ 93 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~ 93 (269)
+.+..+...+..... ..-.+.+|||+|||+|..++.++..+..+|+++|+++.+++. .+.|...+
T Consensus 28 ~~~~~~~~~~l~~l~---~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~------- 92 (257)
T 3f4k_A 28 PGSPEATRKAVSFIN---ELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEI-----FNENAVKA------- 92 (257)
T ss_dssp SCCHHHHHHHHTTSC---CCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHH-----HHHHHHHT-------
T ss_pred CCCHHHHHHHHHHHh---cCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHH-----HHHHHHHc-------
Confidence 444444554444321 233677999999999999988887765699999999999844 34444321
Q ss_pred CCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 024311 94 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS 173 (269)
Q Consensus 94 ~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs 173 (269)
.+..++++..+|+...+
T Consensus 93 ----------~~~~~~~~~~~d~~~~~----------------------------------------------------- 109 (257)
T 3f4k_A 93 ----------NCADRVKGITGSMDNLP----------------------------------------------------- 109 (257)
T ss_dssp ----------TCTTTEEEEECCTTSCS-----------------------------------------------------
T ss_pred ----------CCCCceEEEECChhhCC-----------------------------------------------------
Confidence 02234677777764421
Q ss_pred hhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc---------------ccCcchH
Q 024311 174 RAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV---------------GFNNAAR 238 (269)
Q Consensus 174 ~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f---------------g~~~~~~ 238 (269)
...++||+|++..++++. ..+.+++.+.++|+ |+|++++....... ..-.+..
T Consensus 110 ----------~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (257)
T 3f4k_A 110 ----------FQNEELDLIWSEGAIYNI-GFERGMNEWSKYLK-KGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIP 177 (257)
T ss_dssp ----------SCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEE-EEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHH
T ss_pred ----------CCCCCEEEEEecChHhhc-CHHHHHHHHHHHcC-CCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHH
Confidence 134689999999999998 68899999999999 89999887532100 0012456
Q ss_pred HHHHHhhhcCceeEE
Q 024311 239 HLRSLVDEEGIFGAH 253 (269)
Q Consensus 239 ~F~~~~~~~g~~~~~ 253 (269)
++.+.+++.||-..+
T Consensus 178 ~~~~~l~~aGf~~v~ 192 (257)
T 3f4k_A 178 TCIDKMERAGYTPTA 192 (257)
T ss_dssp HHHHHHHHTTEEEEE
T ss_pred HHHHHHHHCCCeEEE
Confidence 778899999975444
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.6e-12 Score=110.79 Aligned_cols=151 Identities=21% Similarity=0.199 Sum_probs=104.1
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccC
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ 93 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~ 93 (269)
++...+.+.+.+.. ....+.+|||+|||+|...+.++.....+|+++|+++.+++. .+.+....
T Consensus 44 ~~~~~~~~~l~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~------- 107 (273)
T 3bus_A 44 DATDRLTDEMIALL----DVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQ-----ANARATAA------- 107 (273)
T ss_dssp HHHHHHHHHHHHHS----CCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHH-----HHHHHHHT-------
T ss_pred HHHHHHHHHHHHhc----CCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHH-----HHHHHHhc-------
Confidence 44556666666653 134678999999999999988776433499999999998844 33333221
Q ss_pred CCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 024311 94 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS 173 (269)
Q Consensus 94 ~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs 173 (269)
....++++..+|....+
T Consensus 108 ----------~~~~~~~~~~~d~~~~~----------------------------------------------------- 124 (273)
T 3bus_A 108 ----------GLANRVTFSYADAMDLP----------------------------------------------------- 124 (273)
T ss_dssp ----------TCTTTEEEEECCTTSCC-----------------------------------------------------
T ss_pred ----------CCCcceEEEECccccCC-----------------------------------------------------
Confidence 01235666666654421
Q ss_pred hhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccc-------------------cccC
Q 024311 174 RAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-------------------VGFN 234 (269)
Q Consensus 174 ~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~-------------------fg~~ 234 (269)
...++||+|++.+++++....+.+++.+.++|+ |+|++++...... .+..
T Consensus 125 ----------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (273)
T 3bus_A 125 ----------FEDASFDAVWALESLHHMPDRGRALREMARVLR-PGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSL 193 (273)
T ss_dssp ----------SCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEE-EEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCC
T ss_pred ----------CCCCCccEEEEechhhhCCCHHHHHHHHHHHcC-CCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCC
Confidence 134589999999999999999999999999999 8999888642110 0111
Q ss_pred cchHHHHHHhhhcCceeEEE
Q 024311 235 NAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 235 ~~~~~F~~~~~~~g~~~~~~ 254 (269)
.+..++.+.+++.||-..++
T Consensus 194 ~~~~~~~~~l~~aGf~~~~~ 213 (273)
T 3bus_A 194 GGIDEYESDVRQAELVVTST 213 (273)
T ss_dssp CCHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHHHHHHcCCeEEEE
Confidence 24577888899999754433
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.8e-12 Score=109.83 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=102.3
Q ss_pred eeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhc
Q 024311 12 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS 91 (269)
Q Consensus 12 vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~ 91 (269)
.|+++.-+++.+. ..++.+|||+|||+|..+..++..+. +|+++|+++.+++. .+.+...+.
T Consensus 6 ~~~~~~~~~~~~~--------~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~~~~~---- 67 (239)
T 1xxl_A 6 HHHSLGLMIKTAE--------CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEV-----ASSFAQEKG---- 67 (239)
T ss_dssp CHHHHHHHHHHHT--------CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHH-----HHHHHHHHT----
T ss_pred cCCCcchHHHHhC--------cCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHH-----HHHHHHHcC----
Confidence 3555555555543 23678999999999999998888876 89999999999844 344443220
Q ss_pred cCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 024311 92 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS 171 (269)
Q Consensus 92 ~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (269)
.+++++..+|....+
T Consensus 68 --------------~~~v~~~~~d~~~~~--------------------------------------------------- 82 (239)
T 1xxl_A 68 --------------VENVRFQQGTAESLP--------------------------------------------------- 82 (239)
T ss_dssp --------------CCSEEEEECBTTBCC---------------------------------------------------
T ss_pred --------------CCCeEEEecccccCC---------------------------------------------------
Confidence 124666666654321
Q ss_pred CchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccc----------------c---c
Q 024311 172 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY----------------V---G 232 (269)
Q Consensus 172 gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~----------------f---g 232 (269)
...++||+|+++.++++....+.+++.+.++|+ |+|++++...... . .
T Consensus 83 ------------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (239)
T 1xxl_A 83 ------------FPDDSFDIITCRYAAHHFSDVRKAVREVARVLK-QDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHV 149 (239)
T ss_dssp ------------SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEECBCSSHHHHHHHHHHHHHHCTTCC
T ss_pred ------------CCCCcEEEEEECCchhhccCHHHHHHHHHHHcC-CCcEEEEEEcCCCCChhHHHHHHHHHHhcccccc
Confidence 134689999999999999999999999999999 8999888632110 0 0
Q ss_pred cCcchHHHHHHhhhcCceeEE
Q 024311 233 FNNAARHLRSLVDEEGIFGAH 253 (269)
Q Consensus 233 ~~~~~~~F~~~~~~~g~~~~~ 253 (269)
..-...++.+.+++.||-..+
T Consensus 150 ~~~~~~~~~~ll~~aGf~~~~ 170 (239)
T 1xxl_A 150 RESSLSEWQAMFSANQLAYQD 170 (239)
T ss_dssp CCCBHHHHHHHHHHTTEEEEE
T ss_pred CCCCHHHHHHHHHHCCCcEEE
Confidence 112467788899999974333
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-12 Score=111.38 Aligned_cols=146 Identities=16% Similarity=0.069 Sum_probs=101.1
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCC
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESS 97 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~ 97 (269)
..++.+.... ....+.+|||+|||+|..++.++.....+|+++|+++.+++. .+.|....
T Consensus 23 ~~~~~l~~~~----~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~-----a~~~~~~~----------- 82 (256)
T 1nkv_A 23 EKYATLGRVL----RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQ-----AKRRAEEL----------- 82 (256)
T ss_dssp HHHHHHHHHT----CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHH-----HHHHHHHT-----------
T ss_pred HHHHHHHHhc----CCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHH-----HHHHHHhc-----------
Confidence 3444554442 134678999999999999987776523389999999999843 44444321
Q ss_pred CCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhh
Q 024311 98 LTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWE 177 (269)
Q Consensus 98 ~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~ 177 (269)
.+..++.+..+|+.+.+
T Consensus 83 ------~~~~~v~~~~~d~~~~~--------------------------------------------------------- 99 (256)
T 1nkv_A 83 ------GVSERVHFIHNDAAGYV--------------------------------------------------------- 99 (256)
T ss_dssp ------TCTTTEEEEESCCTTCC---------------------------------------------------------
T ss_pred ------CCCcceEEEECChHhCC---------------------------------------------------------
Confidence 02235777767665421
Q ss_pred hhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccc----------------cCcchHHHH
Q 024311 178 RASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG----------------FNNAARHLR 241 (269)
Q Consensus 178 ~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg----------------~~~~~~~F~ 241 (269)
..++||+|++..++++......+++.+.++|+ |+|++++........ .-.+..++.
T Consensus 100 -------~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (256)
T 1nkv_A 100 -------ANEKCDVAACVGATWIAGGFAGAEELLAQSLK-PGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLV 171 (256)
T ss_dssp -------CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEE-EEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHH
T ss_pred -------cCCCCCEEEECCChHhcCCHHHHHHHHHHHcC-CCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHH
Confidence 13589999999999999889999999999999 899988864321000 011457888
Q ss_pred HHhhhcCceeEEE
Q 024311 242 SLVDEEGIFGAHL 254 (269)
Q Consensus 242 ~~~~~~g~~~~~~ 254 (269)
+.+++.||-..++
T Consensus 172 ~~l~~aGf~~~~~ 184 (256)
T 1nkv_A 172 GAFDDLGYDVVEM 184 (256)
T ss_dssp HHHHTTTBCCCEE
T ss_pred HHHHHCCCeeEEE
Confidence 9999999854444
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.3e-13 Score=124.10 Aligned_cols=104 Identities=24% Similarity=0.257 Sum_probs=78.2
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 32 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
..++|++|||||||+|+++++||+.||++|++.|.++ +++. .+.++..|. +..+|.+
T Consensus 80 ~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~-----a~~~~~~n~-----------------~~~~i~~ 136 (376)
T 4hc4_A 80 AALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQ-----AREVVRFNG-----------------LEDRVHV 136 (376)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHH-----HHHHHHHTT-----------------CTTTEEE
T ss_pred HhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHH-----HHHHHHHcC-----------------CCceEEE
Confidence 3578999999999999999999999999999999986 5532 333443331 2345666
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
+.++.++. ..+++||+
T Consensus 137 i~~~~~~~----------------------------------------------------------------~lpe~~Dv 152 (376)
T 4hc4_A 137 LPGPVETV----------------------------------------------------------------ELPEQVDA 152 (376)
T ss_dssp EESCTTTC----------------------------------------------------------------CCSSCEEE
T ss_pred Eeeeeeee----------------------------------------------------------------cCCccccE
Confidence 66654432 13468999
Q ss_pred EEE---eccccccCCHHHHHHHHHHhcCCCCeEEE
Q 024311 192 ILL---TEIPYSVTSLKKLYLLIKKCLRPPYGVVY 223 (269)
Q Consensus 192 Ila---sD~iY~~~~~~~L~~~l~~~L~~p~g~~~ 223 (269)
||+ ...+..+..++.++...+++|+ |+|+++
T Consensus 153 ivsE~~~~~l~~e~~l~~~l~a~~r~Lk-p~G~~i 186 (376)
T 4hc4_A 153 IVSEWMGYGLLHESMLSSVLHARTKWLK-EGGLLL 186 (376)
T ss_dssp EECCCCBTTBTTTCSHHHHHHHHHHHEE-EEEEEE
T ss_pred EEeecccccccccchhhhHHHHHHhhCC-CCceEC
Confidence 997 6677788899999999999999 666544
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-12 Score=110.85 Aligned_cols=149 Identities=15% Similarity=0.162 Sum_probs=104.2
Q ss_pred eeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhh
Q 024311 12 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQ 90 (269)
Q Consensus 12 vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~ 90 (269)
.++.+..+++.+.+.. ....+.+|||+|||+|..++.++.. +. +|+++|+++.+++. .+.+..
T Consensus 36 ~~~~~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~-----a~~~~~------ 99 (266)
T 3ujc_A 36 ISSGGLEATKKILSDI----ELNENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNM-----ANERVS------ 99 (266)
T ss_dssp CSTTHHHHHHHHTTTC----CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHH-----HHHTCC------
T ss_pred cccchHHHHHHHHHhc----CCCCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHH-----HHHHhh------
Confidence 4555666666666553 2346789999999999999887775 55 89999999998843 222210
Q ss_pred ccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccc
Q 024311 91 SRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKL 170 (269)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l 170 (269)
..+++++..+|....+
T Consensus 100 --------------~~~~~~~~~~d~~~~~-------------------------------------------------- 115 (266)
T 3ujc_A 100 --------------GNNKIIFEANDILTKE-------------------------------------------------- 115 (266)
T ss_dssp --------------SCTTEEEEECCTTTCC--------------------------------------------------
T ss_pred --------------cCCCeEEEECccccCC--------------------------------------------------
Confidence 0035666666654421
Q ss_pred cCchhhhhhcccccCCCCccEEEEecccccc--CCHHHHHHHHHHhcCCCCeEEEEEEccccc---------------c-
Q 024311 171 SGSRAWERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKNYV---------------G- 232 (269)
Q Consensus 171 ~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~--~~~~~L~~~l~~~L~~p~g~~~va~k~~~f---------------g- 232 (269)
...++||+|++.+++++. .....+++.+.++|+ |+|++++....... +
T Consensus 116 -------------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (266)
T 3ujc_A 116 -------------FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLK-PTGTLLITDYCATEKENWDDEFKEYVKQRKY 181 (266)
T ss_dssp -------------CCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEESCGGGCCHHHHHHHHHHTC
T ss_pred -------------CCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcC-CCCEEEEEEeccCCcccchHHHHHHHhcCCC
Confidence 134689999999999999 888999999999999 89999887522110 0
Q ss_pred cCcchHHHHHHhhhcCceeEEE
Q 024311 233 FNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 233 ~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
......++.+.+++.||-..++
T Consensus 182 ~~~~~~~~~~~l~~~Gf~~~~~ 203 (266)
T 3ujc_A 182 TLITVEEYADILTACNFKNVVS 203 (266)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEE
T ss_pred CCCCHHHHHHHHHHcCCeEEEE
Confidence 0124678889999999854444
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.3e-12 Score=110.13 Aligned_cols=133 Identities=13% Similarity=0.029 Sum_probs=94.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
+++.+|||+|||+|..++.++..+. +|+++|+++.+++. .+.+.... ....++.+..
T Consensus 65 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~v~~~~ 121 (235)
T 3lcc_A 65 LPLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAK-----ANETYGSS-----------------PKAEYFSFVK 121 (235)
T ss_dssp SCCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHH-----HHHHHTTS-----------------GGGGGEEEEC
T ss_pred CCCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHH-----HHHHhhcc-----------------CCCcceEEEE
Confidence 3556999999999999988887766 89999999999844 33333210 0113566666
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|+...+ ...+||+|+
T Consensus 122 ~d~~~~~----------------------------------------------------------------~~~~fD~v~ 137 (235)
T 3lcc_A 122 EDVFTWR----------------------------------------------------------------PTELFDLIF 137 (235)
T ss_dssp CCTTTCC----------------------------------------------------------------CSSCEEEEE
T ss_pred CchhcCC----------------------------------------------------------------CCCCeeEEE
Confidence 6654321 234899999
Q ss_pred EeccccccC--CHHHHHHHHHHhcCCCCeEEEEEEccccccc-----CcchHHHHHHhhhcCceeEEE
Q 024311 194 LTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKNYVGF-----NNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 194 asD~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~-----~~~~~~F~~~~~~~g~~~~~~ 254 (269)
++.+++... ....+++.+.++|+ |+|++++..-...... .-...++.+.+++.||-..++
T Consensus 138 ~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 204 (235)
T 3lcc_A 138 DYVFFCAIEPEMRPAWAKSMYELLK-PDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSV 204 (235)
T ss_dssp EESSTTTSCGGGHHHHHHHHHHHEE-EEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEE
T ss_pred EChhhhcCCHHHHHHHHHHHHHHCC-CCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEE
Confidence 999999876 88899999999999 8999887642211100 124678999999999754443
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.7e-12 Score=111.53 Aligned_cols=142 Identities=8% Similarity=0.134 Sum_probs=96.7
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCC
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQP 94 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~ 94 (269)
-++.|+.++. ..+++.+|||+|||+|..++.++..+..+|++.|+++.+++. .+.|+..+.
T Consensus 36 d~~ll~~~~~-------~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~-----a~~n~~~~~------- 96 (259)
T 3lpm_A 36 DAVLLAKFSY-------LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADM-----AKRSVAYNQ------- 96 (259)
T ss_dssp HHHHHHHHCC-------CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHH-----HHHHHHHTT-------
T ss_pred HHHHHHHHhc-------CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHH-----HHHHHHHCC-------
Confidence 3666766651 112578999999999999999988877799999999999844 455554331
Q ss_pred CCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCch
Q 024311 95 ESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSR 174 (269)
Q Consensus 95 ~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~ 174 (269)
...+++++.+|..+...
T Consensus 97 ----------~~~~v~~~~~D~~~~~~----------------------------------------------------- 113 (259)
T 3lpm_A 97 ----------LEDQIEIIEYDLKKITD----------------------------------------------------- 113 (259)
T ss_dssp ----------CTTTEEEECSCGGGGGG-----------------------------------------------------
T ss_pred ----------CcccEEEEECcHHHhhh-----------------------------------------------------
Confidence 22356776666554210
Q ss_pred hhhhhcccccCCCCccEEEEecccccc--------------------CCHHHHHHHHHHhcCCCCeEEEEEEcccccccC
Q 024311 175 AWERASEADQGEGGYDVILLTEIPYSV--------------------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFN 234 (269)
Q Consensus 175 ~W~~~~~~~~~~~~fDlIlasD~iY~~--------------------~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~ 234 (269)
....++||+|++.-..|.. ..++.+++.+.++|+ |+|++++....
T Consensus 114 --------~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~------ 178 (259)
T 3lpm_A 114 --------LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLK-QGGKANFVHRP------ 178 (259)
T ss_dssp --------TSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEE-EEEEEEEEECT------
T ss_pred --------hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHcc-CCcEEEEEEcH------
Confidence 0134689999984433332 234568889999999 89999986543
Q ss_pred cchHHHHHHhhhcCceeEE
Q 024311 235 NAARHLRSLVDEEGIFGAH 253 (269)
Q Consensus 235 ~~~~~F~~~~~~~g~~~~~ 253 (269)
....+++..+++.|+...+
T Consensus 179 ~~~~~~~~~l~~~~~~~~~ 197 (259)
T 3lpm_A 179 ERLLDIIDIMRKYRLEPKR 197 (259)
T ss_dssp TTHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHCCCceEE
Confidence 2467899999998874333
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-12 Score=107.15 Aligned_cols=126 Identities=12% Similarity=0.106 Sum_probs=92.2
Q ss_pred CCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecCC
Q 024311 36 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGD 115 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 115 (269)
+.+|||+|||+|.....++..|. +|++.|+++.+++.+ +.+. +++.+..+|
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a-----~~~~-----------------------~~~~~~~~d 92 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELA-----RQTH-----------------------PSVTFHHGT 92 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHH-----HHHC-----------------------TTSEEECCC
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHH-----HHhC-----------------------CCCeEEeCc
Confidence 77999999999999988888877 899999999988432 2221 234555555
Q ss_pred CCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEEe
Q 024311 116 WEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLT 195 (269)
Q Consensus 116 w~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlas 195 (269)
....+ ...++||+|++.
T Consensus 93 ~~~~~---------------------------------------------------------------~~~~~fD~v~~~ 109 (203)
T 3h2b_A 93 ITDLS---------------------------------------------------------------DSPKRWAGLLAW 109 (203)
T ss_dssp GGGGG---------------------------------------------------------------GSCCCEEEEEEE
T ss_pred ccccc---------------------------------------------------------------cCCCCeEEEEeh
Confidence 43321 134689999999
Q ss_pred ccccccC--CHHHHHHHHHHhcCCCCeEEEEEEcccc----cc------cCcchHHHHHHhhhcCceeEEE
Q 024311 196 EIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKNY----VG------FNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 196 D~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~k~~~----fg------~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
.++++.. ....+++.+.++|+ |+|++++...... +. ..-...++.+.+++.||-..++
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 179 (203)
T 3h2b_A 110 YSLIHMGPGELPDALVALRMAVE-DGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSS 179 (203)
T ss_dssp SSSTTCCTTTHHHHHHHHHHTEE-EEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEE
T ss_pred hhHhcCCHHHHHHHHHHHHHHcC-CCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEE
Confidence 9999885 88999999999999 8999988752211 00 0014788999999999744443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.40 E-value=7.7e-12 Score=107.46 Aligned_cols=143 Identities=17% Similarity=0.179 Sum_probs=100.5
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
..++.+|||+|||+|..+..++... ..+|+++|+++.+++. .+.+... ..++++
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~-----a~~~~~~--------------------~~~~~~ 96 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEI-----AKNRFRG--------------------NLKVKY 96 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHH-----HHHHTCS--------------------CTTEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHH-----HHHhhcc--------------------CCCEEE
Confidence 3467899999999999998777663 3489999999998843 3333210 124566
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|....+ ..++||+
T Consensus 97 ~~~d~~~~~----------------------------------------------------------------~~~~fD~ 112 (234)
T 3dtn_A 97 IEADYSKYD----------------------------------------------------------------FEEKYDM 112 (234)
T ss_dssp EESCTTTCC----------------------------------------------------------------CCSCEEE
T ss_pred EeCchhccC----------------------------------------------------------------CCCCceE
Confidence 656544321 1268999
Q ss_pred EEEeccccccCCHH--HHHHHHHHhcCCCCeEEEEEEccccc-------------------c----------------cC
Q 024311 192 ILLTEIPYSVTSLK--KLYLLIKKCLRPPYGVVYLATKKNYV-------------------G----------------FN 234 (269)
Q Consensus 192 IlasD~iY~~~~~~--~L~~~l~~~L~~p~g~~~va~k~~~f-------------------g----------------~~ 234 (269)
|+++.++++..... .+++.+.++|+ |+|+++++.....- | ..
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILK-ESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKD 191 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcC-CCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence 99999999887555 48999999999 89999987522100 0 01
Q ss_pred cchHHHHHHhhhcCceeEEEEeeecCcceEE
Q 024311 235 NAARHLRSLVDEEGIFGAHLIKEMTDRDIWK 265 (269)
Q Consensus 235 ~~~~~F~~~~~~~g~~~~~~~~~~~~~~i~~ 265 (269)
-+..++.+.+++.||-.+++.+..-.-.+|.
T Consensus 192 ~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~ 222 (234)
T 3dtn_A 192 IEMNQQLNWLKEAGFRDVSCIYKYYQFAVMF 222 (234)
T ss_dssp CBHHHHHHHHHHTTCEEEEEEEEETTEEEEE
T ss_pred cCHHHHHHHHHHcCCCceeeeeeecceeEEE
Confidence 1446777899999998888877766666654
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.6e-12 Score=107.07 Aligned_cols=129 Identities=20% Similarity=0.209 Sum_probs=94.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||+|||+|..+..++..++ +|+++|+++.+++. .+.+. ...++++..+
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~---------------------~~~~~~~~~~ 105 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQK-----GKERG---------------------EGPDLSFIKG 105 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH-----HHTTT---------------------CBTTEEEEEC
T ss_pred CCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHH-----HHhhc---------------------ccCCceEEEc
Confidence 678999999999999998888877 89999999998843 22221 0134566555
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|....+ ...++||+|++
T Consensus 106 d~~~~~---------------------------------------------------------------~~~~~fD~v~~ 122 (242)
T 3l8d_A 106 DLSSLP---------------------------------------------------------------FENEQFEAIMA 122 (242)
T ss_dssp BTTBCS---------------------------------------------------------------SCTTCEEEEEE
T ss_pred chhcCC---------------------------------------------------------------CCCCCccEEEE
Confidence 544321 13468999999
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc-----------c-----cCcchHHHHHHhhhcCceeEEE
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV-----------G-----FNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f-----------g-----~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
..++++......+++.+.++|+ |+|++++....... + ..-...++.+.+++.||-..+.
T Consensus 123 ~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 197 (242)
T 3l8d_A 123 INSLEWTEEPLRALNEIKRVLK-SDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDG 197 (242)
T ss_dssp ESCTTSSSCHHHHHHHHHHHEE-EEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEE
T ss_pred cChHhhccCHHHHHHHHHHHhC-CCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHHHHcCCEEEEe
Confidence 9999999999999999999999 89999887521100 0 0013457889999999854444
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.2e-12 Score=110.83 Aligned_cols=133 Identities=21% Similarity=0.222 Sum_probs=96.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||+|||+|..++.++..+. +|+++|+++.+++. .+.++... ...++++++.+
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~v~~~~~ 124 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDR-----AKQAAEAK-----------------GVSDNMQFIHC 124 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHHHC------------------CCGGGEEEEES
T ss_pred CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHH-----HHHHHHhc-----------------CCCcceEEEEc
Confidence 578999999999999998888877 89999999999843 33443211 02245677666
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|....+. ...++||+|++
T Consensus 125 d~~~~~~--------------------------------------------------------------~~~~~fD~v~~ 142 (285)
T 4htf_A 125 AAQDVAS--------------------------------------------------------------HLETPVDLILF 142 (285)
T ss_dssp CGGGTGG--------------------------------------------------------------GCSSCEEEEEE
T ss_pred CHHHhhh--------------------------------------------------------------hcCCCceEEEE
Confidence 6554320 13468999999
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc----------------------------ccCcchHHHHHHhhh
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV----------------------------GFNNAARHLRSLVDE 246 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f----------------------------g~~~~~~~F~~~~~~ 246 (269)
..++++......+++.+.++|+ |+|++++......- ...-+..++.+.+++
T Consensus 143 ~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 221 (285)
T 4htf_A 143 HAVLEWVADPRSVLQTLWSVLR-PGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEE 221 (285)
T ss_dssp ESCGGGCSCHHHHHHHHHHTEE-EEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHH
T ss_pred CchhhcccCHHHHHHHHHHHcC-CCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999 89999887531100 001135788899999
Q ss_pred cCceeEE
Q 024311 247 EGIFGAH 253 (269)
Q Consensus 247 ~g~~~~~ 253 (269)
.||-..+
T Consensus 222 aGf~v~~ 228 (285)
T 4htf_A 222 AGWQIMG 228 (285)
T ss_dssp TTCEEEE
T ss_pred CCCceee
Confidence 9985433
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-11 Score=108.96 Aligned_cols=152 Identities=21% Similarity=0.261 Sum_probs=102.7
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCC
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQP 94 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~ 94 (269)
...+++.+............+.+|||+|||+|...+.++.. +. +|+++|+++.+++.+ +.+....
T Consensus 63 ~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a-----~~~~~~~-------- 128 (297)
T 2o57_A 63 SLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRN-----EEYNNQA-------- 128 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHH-----HHHHHHH--------
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHH-----HHHHHhc--------
Confidence 34455555554300001236789999999999999877765 66 899999999998543 3333221
Q ss_pred CCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCch
Q 024311 95 ESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSR 174 (269)
Q Consensus 95 ~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~ 174 (269)
...+++++..+|+...+
T Consensus 129 ---------~~~~~~~~~~~d~~~~~------------------------------------------------------ 145 (297)
T 2o57_A 129 ---------GLADNITVKYGSFLEIP------------------------------------------------------ 145 (297)
T ss_dssp ---------TCTTTEEEEECCTTSCS------------------------------------------------------
T ss_pred ---------CCCcceEEEEcCcccCC------------------------------------------------------
Confidence 02245677666655432
Q ss_pred hhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccc----------------cccCcchH
Q 024311 175 AWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY----------------VGFNNAAR 238 (269)
Q Consensus 175 ~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~----------------fg~~~~~~ 238 (269)
...++||+|++.+++++......+++.+.++|+ |+|++++...... +.......
T Consensus 146 ---------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (297)
T 2o57_A 146 ---------CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLK-PRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLG 215 (297)
T ss_dssp ---------SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHH
T ss_pred ---------CCCCCEeEEEecchhhhcCCHHHHHHHHHHHcC-CCeEEEEEEeccCCCCchHHHHHHHHHhcCCCCCCHH
Confidence 134589999999999999999999999999999 8999888743211 00112456
Q ss_pred HHHHHhhhcCceeEEE
Q 024311 239 HLRSLVDEEGIFGAHL 254 (269)
Q Consensus 239 ~F~~~~~~~g~~~~~~ 254 (269)
.+.+.+++.||-..++
T Consensus 216 ~~~~~l~~aGf~~~~~ 231 (297)
T 2o57_A 216 LYRSLAKECGLVTLRT 231 (297)
T ss_dssp HHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHCCCeEEEE
Confidence 7778899999754443
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.6e-12 Score=107.26 Aligned_cols=103 Identities=22% Similarity=0.337 Sum_probs=78.7
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.++.+|||+|||+|..+..++..+..+|+++|+++.+++. .+.+.. ..++++..
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~-----a~~~~~---------------------~~~~~~~~ 95 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLAR-----ARAAGP---------------------DTGITYER 95 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHH-----HHHTSC---------------------SSSEEEEE
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHH-----HHHhcc---------------------cCCceEEE
Confidence 3678999999999999988888877689999999998843 222210 12355554
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|....+ ...++||+|+
T Consensus 96 ~d~~~~~---------------------------------------------------------------~~~~~fD~v~ 112 (243)
T 3bkw_A 96 ADLDKLH---------------------------------------------------------------LPQDSFDLAY 112 (243)
T ss_dssp CCGGGCC---------------------------------------------------------------CCTTCEEEEE
T ss_pred cChhhcc---------------------------------------------------------------CCCCCceEEE
Confidence 4433211 1345899999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
++.++++......+++.+.++|+ |+|++++..
T Consensus 113 ~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~ 144 (243)
T 3bkw_A 113 SSLALHYVEDVARLFRTVHQALS-PGGHFVFST 144 (243)
T ss_dssp EESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred EeccccccchHHHHHHHHHHhcC-cCcEEEEEe
Confidence 99999999999999999999999 899998875
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-11 Score=111.94 Aligned_cols=133 Identities=15% Similarity=0.101 Sum_probs=96.3
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
..+.+|||+|||+|..++.++.. ++ +|++.|+++.+++. .+.|...+ .+..++++.
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~v~~~ 172 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADF-----GNRRAREL-----------------RIDDHVRSR 172 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHH-----HHHHHHHT-----------------TCTTTEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHH-----HHHHHHHc-----------------CCCCceEEE
Confidence 46789999999999999887776 65 89999999999843 44444332 122457777
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.+ ...++||+|
T Consensus 173 ~~d~~~~~---------------------------------------------------------------~~~~~fD~V 189 (312)
T 3vc1_A 173 VCNMLDTP---------------------------------------------------------------FDKGAVTAS 189 (312)
T ss_dssp ECCTTSCC---------------------------------------------------------------CCTTCEEEE
T ss_pred ECChhcCC---------------------------------------------------------------CCCCCEeEE
Confidence 77655421 134689999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc-----------------ccCcchHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV-----------------GFNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f-----------------g~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
++.+++++.+ ...+++.+.++|+ |+|++++......- .......++.+.+++.||-..++
T Consensus 190 ~~~~~l~~~~-~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~ 266 (312)
T 3vc1_A 190 WNNESTMYVD-LHDLFSEHSRFLK-VGGRYVTITGCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTI 266 (312)
T ss_dssp EEESCGGGSC-HHHHHHHHHHHEE-EEEEEEEEEEEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEE
T ss_pred EECCchhhCC-HHHHHHHHHHHcC-CCcEEEEEEccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEE
Confidence 9999999984 9999999999999 89998887522110 01124677888999999754444
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-11 Score=104.86 Aligned_cols=137 Identities=18% Similarity=0.256 Sum_probs=94.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||+|||+|..++.++..++ +|+++|+++.+++. .+.|.... .+. .....++.+..+
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~~~~----------~~~---~~~~~~~~~~~~ 90 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRL-----AETAARSP----------GLN---QKTGGKAEFKVE 90 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHTTCC----------SCC---SSSSCEEEEEEC
T ss_pred CCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHH-----HHHHHHhc----------CCc---cccCcceEEEEe
Confidence 678999999999999998888877 89999999998843 33333110 000 001124555555
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|....+ ...++||+|++
T Consensus 91 d~~~~~---------------------------------------------------------------~~~~~~D~v~~ 107 (235)
T 3sm3_A 91 NASSLS---------------------------------------------------------------FHDSSFDFAVM 107 (235)
T ss_dssp CTTSCC---------------------------------------------------------------SCTTCEEEEEE
T ss_pred cccccC---------------------------------------------------------------CCCCceeEEEE
Confidence 433221 13468999999
Q ss_pred eccccccCCHH---HHHHHHHHhcCCCCeEEEEEEcccc-----------------------------------cccCcc
Q 024311 195 TEIPYSVTSLK---KLYLLIKKCLRPPYGVVYLATKKNY-----------------------------------VGFNNA 236 (269)
Q Consensus 195 sD~iY~~~~~~---~L~~~l~~~L~~p~g~~~va~k~~~-----------------------------------fg~~~~ 236 (269)
+.++++..... .+++.+.++|+ |+|++++...... ....-.
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLK-PGAYLYLVEFGQNWHLKLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFT 186 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEE-EEEEEEEEEEBCCTTSHHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBC
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcC-CCeEEEEEECCcchhHHHHHHHhhhhccchhhhcceEecccccCCcceeeEeCC
Confidence 99999988877 88999999998 8999988732110 000125
Q ss_pred hHHHHHHhhhcCceeEEE
Q 024311 237 ARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 237 ~~~F~~~~~~~g~~~~~~ 254 (269)
..++.+.+++.||-..++
T Consensus 187 ~~~l~~ll~~aGf~~~~~ 204 (235)
T 3sm3_A 187 EKELVFLLTDCRFEIDYF 204 (235)
T ss_dssp HHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 788999999999854444
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-11 Score=105.06 Aligned_cols=130 Identities=15% Similarity=0.125 Sum_probs=93.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+.+|||+|||+|.....++..++ +|++.|.++.+++.+ +.+.... ..+++.+..+
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a-----~~~~~~~------------------~~~~v~~~~~ 92 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVA-----RAFIEGN------------------GHQQVEYVQG 92 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHH-----HHHHHHT------------------TCCSEEEEEC
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHH-----HHHHHhc------------------CCCceEEEEe
Confidence 678999999999999988888876 999999999998543 3333221 0124666666
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|....+ ..+++||+|++
T Consensus 93 d~~~l~---------------------------------------------------------------~~~~~fD~V~~ 109 (260)
T 1vl5_A 93 DAEQMP---------------------------------------------------------------FTDERFHIVTC 109 (260)
T ss_dssp CC-CCC---------------------------------------------------------------SCTTCEEEEEE
T ss_pred cHHhCC---------------------------------------------------------------CCCCCEEEEEE
Confidence 654321 13468999999
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccc-------------------cccCcchHHHHHHhhhcCceeE
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-------------------VGFNNAARHLRSLVDEEGIFGA 252 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~-------------------fg~~~~~~~F~~~~~~~g~~~~ 252 (269)
+.++++..+.+.+++.+.++|+ |+|++++...... ....-...++.+.+++.||-..
T Consensus 110 ~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 185 (260)
T 1vl5_A 110 RIAAHHFPNPASFVSEAYRVLK-KGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELE 185 (260)
T ss_dssp ESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEE
T ss_pred hhhhHhcCCHHHHHHHHHHHcC-CCCEEEEEEcCCCCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEE
Confidence 9999999999999999999999 8999888632110 0011245678888999997433
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.37 E-value=9.3e-12 Score=106.80 Aligned_cols=128 Identities=20% Similarity=0.172 Sum_probs=93.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.++.+|||+|||+|.....++..++ +|+++|+++.+++.+ +.+. ..++++..
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a-----~~~~----------------------~~~v~~~~ 92 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHA-----QGRL----------------------KDGITYIH 92 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHH-----HHHS----------------------CSCEEEEE
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHH-----HHhh----------------------hCCeEEEE
Confidence 4678999999999999998888877 899999999988432 2211 01455554
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+. ..+++||+|+
T Consensus 93 ~d~~~~----------------------------------------------------------------~~~~~fD~v~ 108 (250)
T 2p7i_A 93 SRFEDA----------------------------------------------------------------QLPRRYDNIV 108 (250)
T ss_dssp SCGGGC----------------------------------------------------------------CCSSCEEEEE
T ss_pred ccHHHc----------------------------------------------------------------CcCCcccEEE
Confidence 443321 1245899999
Q ss_pred EeccccccCCHHHHHHHHH-HhcCCCCeEEEEEEccccc-------------------------c--cCcchHHHHHHhh
Q 024311 194 LTEIPYSVTSLKKLYLLIK-KCLRPPYGVVYLATKKNYV-------------------------G--FNNAARHLRSLVD 245 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~-~~L~~p~g~~~va~k~~~f-------------------------g--~~~~~~~F~~~~~ 245 (269)
+..++++......+++.+. ++|+ |+|++++....... + ..-+..++.+.++
T Consensus 109 ~~~~l~~~~~~~~~l~~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (250)
T 2p7i_A 109 LTHVLEHIDDPVALLKRINDDWLA-EGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDAS 187 (250)
T ss_dssp EESCGGGCSSHHHHHHHHHHTTEE-EEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHH
T ss_pred EhhHHHhhcCHHHHHHHHHHHhcC-CCCEEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHH
Confidence 9999999999999999999 9999 89999987632110 0 0114678889999
Q ss_pred hcCceeEEE
Q 024311 246 EEGIFGAHL 254 (269)
Q Consensus 246 ~~g~~~~~~ 254 (269)
+.||-..++
T Consensus 188 ~~Gf~~~~~ 196 (250)
T 2p7i_A 188 RAGLQVTYR 196 (250)
T ss_dssp HTTCEEEEE
T ss_pred HCCCeEEEE
Confidence 999854443
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-11 Score=105.19 Aligned_cols=129 Identities=20% Similarity=0.160 Sum_probs=90.1
Q ss_pred CCCCEEEEEcCC-CCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCG-YGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcG-tGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
-++.+|||+||| +|..++.++.....+|+++|+++.+++ ..+.|+..+. .++++.
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~-----~a~~~~~~~~-------------------~~v~~~ 109 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFE-----YARRNIERNN-------------------SNVRLV 109 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHH-----HHHHHHHHTT-------------------CCCEEE
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHH-----HHHHHHHHhC-------------------CCcEEE
Confidence 368899999999 999999888773348999999999984 4455554431 145666
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|+..... ...++||+|
T Consensus 110 ~~d~~~~~~--------------------------------------------------------------~~~~~fD~I 127 (230)
T 3evz_A 110 KSNGGIIKG--------------------------------------------------------------VVEGTFDVI 127 (230)
T ss_dssp ECSSCSSTT--------------------------------------------------------------TCCSCEEEE
T ss_pred eCCchhhhh--------------------------------------------------------------cccCceeEE
Confidence 666543210 123689999
Q ss_pred EEeccccccCC--------------------HHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeE
Q 024311 193 LLTEIPYSVTS--------------------LKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGA 252 (269)
Q Consensus 193 lasD~iY~~~~--------------------~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~ 252 (269)
++ +..|.+.. +..+++.+.++|+ |+|++++.....+ .....+.+.+++.|+ ..
T Consensus 128 ~~-npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~----~~~~~~~~~l~~~g~-~~ 200 (230)
T 3evz_A 128 FS-APPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLN-PGGKVALYLPDKE----KLLNVIKERGIKLGY-SV 200 (230)
T ss_dssp EE-CCCCC---------------CCSSSCHHHHHHHHHHGGGEE-EEEEEEEEEESCH----HHHHHHHHHHHHTTC-EE
T ss_pred EE-CCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhC-CCeEEEEEecccH----hHHHHHHHHHHHcCC-ce
Confidence 96 55554322 3778888889998 8999988755432 246789999999997 44
Q ss_pred EEE
Q 024311 253 HLI 255 (269)
Q Consensus 253 ~~~ 255 (269)
+.+
T Consensus 201 ~~~ 203 (230)
T 3evz_A 201 KDI 203 (230)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=104.88 Aligned_cols=125 Identities=23% Similarity=0.266 Sum_probs=90.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||+|||+|..+..++..+. +|+++|+++.+++. .+.+. + +.+..+
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~--~----------------------~~~~~~ 92 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAE-----ASRRL--G----------------------RPVRTM 92 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHH--T----------------------SCCEEC
T ss_pred CCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHH-----HHHhc--C----------------------CceEEe
Confidence 578999999999999998888877 89999999998844 33332 1 111112
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|.... ...++||+|++
T Consensus 93 d~~~~----------------------------------------------------------------~~~~~fD~v~~ 108 (211)
T 3e23_A 93 LFHQL----------------------------------------------------------------DAIDAYDAVWA 108 (211)
T ss_dssp CGGGC----------------------------------------------------------------CCCSCEEEEEE
T ss_pred eeccC----------------------------------------------------------------CCCCcEEEEEe
Confidence 21110 13458999999
Q ss_pred eccccccC--CHHHHHHHHHHhcCCCCeEEEEEEcccccc---------cCcchHHHHHHhhhcC-ceeEEE
Q 024311 195 TEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKNYVG---------FNNAARHLRSLVDEEG-IFGAHL 254 (269)
Q Consensus 195 sD~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~k~~~fg---------~~~~~~~F~~~~~~~g-~~~~~~ 254 (269)
+.++++.. ....+++.+.++|+ |+|++++........ ..-...++.+.+++.| |-..++
T Consensus 109 ~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 109 HACLLHVPRDELADVLKLIWRALK-PGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAV 179 (211)
T ss_dssp CSCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred cCchhhcCHHHHHHHHHHHHHhcC-CCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEE
Confidence 99999887 77889999999999 899999885432100 0125788999999999 854444
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-11 Score=106.69 Aligned_cols=135 Identities=22% Similarity=0.352 Sum_probs=95.0
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
.-++.+|||+|||+|.....++..+ ..+|+++|+++.+++. .+.|...+. .+++.+
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~~------------------~~~~~~ 91 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEK-----ARENTEKNG------------------IKNVKF 91 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHH-----HHHHHHHTT------------------CCSEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHH-----HHHHHHHcC------------------CCCcEE
Confidence 3478899999999999998877764 3589999999999843 344443210 124566
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
...|....+ ...++||+
T Consensus 92 ~~~d~~~~~---------------------------------------------------------------~~~~~fD~ 108 (276)
T 3mgg_A 92 LQANIFSLP---------------------------------------------------------------FEDSSFDH 108 (276)
T ss_dssp EECCGGGCC---------------------------------------------------------------SCTTCEEE
T ss_pred EEcccccCC---------------------------------------------------------------CCCCCeeE
Confidence 555544321 13468999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccc---cc----------------------ccCcchHHHHHHhhh
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN---YV----------------------GFNNAARHLRSLVDE 246 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~---~f----------------------g~~~~~~~F~~~~~~ 246 (269)
|+++.++++....+.+++.+.++|+ |+|++++..... ++ +.......+...+++
T Consensus 109 v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 187 (276)
T 3mgg_A 109 IFVCFVLEHLQSPEEALKSLKKVLK-PGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQE 187 (276)
T ss_dssp EEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHH
T ss_pred EEEechhhhcCCHHHHHHHHHHHcC-CCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 9999999999999999999999999 899988864211 00 001123567778999
Q ss_pred cCceeEEE
Q 024311 247 EGIFGAHL 254 (269)
Q Consensus 247 ~g~~~~~~ 254 (269)
.||-..++
T Consensus 188 aGf~~v~~ 195 (276)
T 3mgg_A 188 SGFEKIRV 195 (276)
T ss_dssp TTCEEEEE
T ss_pred CCCCeEEE
Confidence 99854444
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.3e-12 Score=109.47 Aligned_cols=132 Identities=17% Similarity=0.222 Sum_probs=94.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
..+.+|||+|||+|..+..++..+..+|++.|+++.+++. .+.+... ..++++..
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~-----a~~~~~~--------------------~~~~~~~~ 146 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEE-----AKRELAG--------------------MPVGKFIL 146 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHH-----HHHHTTT--------------------SSEEEEEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHH-----HHHHhcc--------------------CCceEEEE
Confidence 3678999999999999988777666689999999998843 2333210 03566666
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|+...+ ...++||+|+
T Consensus 147 ~d~~~~~---------------------------------------------------------------~~~~~fD~v~ 163 (254)
T 1xtp_A 147 ASMETAT---------------------------------------------------------------LPPNTYDLIV 163 (254)
T ss_dssp SCGGGCC---------------------------------------------------------------CCSSCEEEEE
T ss_pred ccHHHCC---------------------------------------------------------------CCCCCeEEEE
Confidence 6544321 1345899999
Q ss_pred Eecccccc--CCHHHHHHHHHHhcCCCCeEEEEEEcccc-----cc-----cCcchHHHHHHhhhcCceeEEE
Q 024311 194 LTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKNY-----VG-----FNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 194 asD~iY~~--~~~~~L~~~l~~~L~~p~g~~~va~k~~~-----fg-----~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
++.++++. .....+++.+.++|+ |+|++++...... .. ......++.+.+++.||-..++
T Consensus 164 ~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 235 (254)
T 1xtp_A 164 IQWTAIYLTDADFVKFFKHCQQALT-PNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKE 235 (254)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEEE
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcC-CCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEEe
Confidence 99999988 457889999999999 8999988763110 00 0124578899999999855544
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.9e-11 Score=100.71 Aligned_cols=125 Identities=12% Similarity=0.089 Sum_probs=91.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
..+.+|||+|||+|..++.++..+ ..+|+++|+++++++. .+.|+..+. . .++++.
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~~-----------------~-~~v~~~ 95 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGF-----IRDNLKKFV-----------------A-RNVTLV 95 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHH-----HHHHHHHHT-----------------C-TTEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHH-----HHHHHHHhC-----------------C-CcEEEE
Confidence 367899999999999999888776 3599999999999844 444543321 1 245665
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.. ....+||+|
T Consensus 96 ~~d~~~~~---------------------------------------------------------------~~~~~~D~i 112 (204)
T 3e05_A 96 EAFAPEGL---------------------------------------------------------------DDLPDPDRV 112 (204)
T ss_dssp ECCTTTTC---------------------------------------------------------------TTSCCCSEE
T ss_pred eCChhhhh---------------------------------------------------------------hcCCCCCEE
Confidence 55543210 022479999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
+.....+ ..+.+++.+.++|+ |+|++++..... .....+.+.+++.|+ ..++
T Consensus 113 ~~~~~~~---~~~~~l~~~~~~Lk-pgG~l~~~~~~~-----~~~~~~~~~l~~~g~-~~~~ 164 (204)
T 3e05_A 113 FIGGSGG---MLEEIIDAVDRRLK-SEGVIVLNAVTL-----DTLTKAVEFLEDHGY-MVEV 164 (204)
T ss_dssp EESCCTT---CHHHHHHHHHHHCC-TTCEEEEEECBH-----HHHHHHHHHHHHTTC-EEEE
T ss_pred EECCCCc---CHHHHHHHHHHhcC-CCeEEEEEeccc-----ccHHHHHHHHHHCCC-ceeE
Confidence 9977665 78899999999998 899999876543 357889999999997 4433
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.5e-11 Score=100.53 Aligned_cols=122 Identities=20% Similarity=0.134 Sum_probs=88.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||+|||+|..+..++..+. +|+++|+++.+++. .+.+.. .++++..+
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~~----------------------~~~~~~~~ 96 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMI-----AKEKLP----------------------KEFSITEG 96 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHH-----HHHHSC----------------------TTCCEESC
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHH-----HHHhCC----------------------CceEEEeC
Confidence 578999999999999988888876 89999999998843 222210 13445445
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|....+ .. ++||+|++
T Consensus 97 d~~~~~---------------------------------------------------------------~~-~~fD~v~~ 112 (220)
T 3hnr_A 97 DFLSFE---------------------------------------------------------------VP-TSIDTIVS 112 (220)
T ss_dssp CSSSCC---------------------------------------------------------------CC-SCCSEEEE
T ss_pred ChhhcC---------------------------------------------------------------CC-CCeEEEEE
Confidence 443321 12 68999999
Q ss_pred eccccccCCHHH--HHHHHHHhcCCCCeEEEEEEccccc--------------c-----------cCcchHHHHHHhhhc
Q 024311 195 TEIPYSVTSLKK--LYLLIKKCLRPPYGVVYLATKKNYV--------------G-----------FNNAARHLRSLVDEE 247 (269)
Q Consensus 195 sD~iY~~~~~~~--L~~~l~~~L~~p~g~~~va~k~~~f--------------g-----------~~~~~~~F~~~~~~~ 247 (269)
..++++...... +++.+.++|+ |+|.+++......- | .-.+..++.+.+++.
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 191 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLN-KGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENN 191 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSC-TTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHT
T ss_pred CcchhcCChHHHHHHHHHHHHhcC-CCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHC
Confidence 999999888776 9999999998 89999988422100 0 001457888999999
Q ss_pred Cc
Q 024311 248 GI 249 (269)
Q Consensus 248 g~ 249 (269)
||
T Consensus 192 Gf 193 (220)
T 3hnr_A 192 GF 193 (220)
T ss_dssp TE
T ss_pred CC
Confidence 97
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-11 Score=103.32 Aligned_cols=138 Identities=15% Similarity=0.139 Sum_probs=96.6
Q ss_pred eccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhcc
Q 024311 13 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR 92 (269)
Q Consensus 13 W~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~ 92 (269)
++....+.+++.... .++.+|||+|||+|..++.++..+..+|+++|+++.+++ ..+.|+..+.
T Consensus 44 ~~~~~~~~~~l~~~~------~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~-----~a~~~~~~~~----- 107 (205)
T 3grz_A 44 HQTTQLAMLGIERAM------VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMT-----AAEENAALNG----- 107 (205)
T ss_dssp HHHHHHHHHHHHHHC------SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHH-----HHHHHHHHTT-----
T ss_pred CccHHHHHHHHHHhc------cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHH-----HHHHHHHHcC-----
Confidence 455666666766542 257899999999999999888888779999999999984 4455553321
Q ss_pred CCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 024311 93 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG 172 (269)
Q Consensus 93 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~g 172 (269)
. .++++..+|+...
T Consensus 108 ------------~-~~v~~~~~d~~~~----------------------------------------------------- 121 (205)
T 3grz_A 108 ------------I-YDIALQKTSLLAD----------------------------------------------------- 121 (205)
T ss_dssp ------------C-CCCEEEESSTTTT-----------------------------------------------------
T ss_pred ------------C-CceEEEecccccc-----------------------------------------------------
Confidence 1 1255555554321
Q ss_pred chhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeE
Q 024311 173 SRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGA 252 (269)
Q Consensus 173 s~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~ 252 (269)
..++||+|++.-++. .+..+++.+.++|+ |+|++++..-.. .....+.+.+++.|+-..
T Consensus 122 ------------~~~~fD~i~~~~~~~---~~~~~l~~~~~~L~-~gG~l~~~~~~~-----~~~~~~~~~~~~~Gf~~~ 180 (205)
T 3grz_A 122 ------------VDGKFDLIVANILAE---ILLDLIPQLDSHLN-EDGQVIFSGIDY-----LQLPKIEQALAENSFQID 180 (205)
T ss_dssp ------------CCSCEEEEEEESCHH---HHHHHGGGSGGGEE-EEEEEEEEEEEG-----GGHHHHHHHHHHTTEEEE
T ss_pred ------------CCCCceEEEECCcHH---HHHHHHHHHHHhcC-CCCEEEEEecCc-----ccHHHHHHHHHHcCCceE
Confidence 235899999975543 25677888888898 899998864332 257789999999997433
Q ss_pred E
Q 024311 253 H 253 (269)
Q Consensus 253 ~ 253 (269)
+
T Consensus 181 ~ 181 (205)
T 3grz_A 181 L 181 (205)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.5e-11 Score=99.28 Aligned_cols=137 Identities=17% Similarity=0.276 Sum_probs=93.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCC-eeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAP-SVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 113 (269)
++.+|||+|||+|..++.++..+ .+|+++|+++.+++. .+.|...+. ... ++++..
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~~~-~~v~~~D~~~~~~~~-----a~~~~~~~~-----------------~~~~~~~~~~ 108 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKL-----AKENIKLNN-----------------LDNYDIRVVH 108 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHH-----HHHHHHHTT-----------------CTTSCEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHcC-CeEEEEECCHHHHHH-----HHHHHHHcC-----------------CCccceEEEE
Confidence 67899999999999999888874 499999999999843 444443220 111 255655
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|+... ....+||+|+
T Consensus 109 ~d~~~~----------------------------------------------------------------~~~~~~D~v~ 124 (194)
T 1dus_A 109 SDLYEN----------------------------------------------------------------VKDRKYNKII 124 (194)
T ss_dssp CSTTTT----------------------------------------------------------------CTTSCEEEEE
T ss_pred Cchhcc----------------------------------------------------------------cccCCceEEE
Confidence 554321 1235899999
Q ss_pred Eeccccc-cCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEEEeeecCcceEE
Q 024311 194 LTEIPYS-VTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRDIWK 265 (269)
Q Consensus 194 asD~iY~-~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~~~~~~~~~i~~ 265 (269)
+..+++. ......+++.+.++|+ |+|++++..... ....++.+.+++. +...+++......-+|.
T Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~-----~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~ 190 (194)
T 1dus_A 125 TNPPIRAGKEVLHRIIEEGKELLK-DNGEIWVVIQTK-----QGAKSLAKYMKDV-FGNVETVTIKGGYRVLK 190 (194)
T ss_dssp ECCCSTTCHHHHHHHHHHHHHHEE-EEEEEEEEEEST-----HHHHHHHHHHHHH-HSCCEEEEEETTEEEEE
T ss_pred ECCCcccchhHHHHHHHHHHHHcC-CCCEEEEEECCC-----CChHHHHHHHHHH-hcceEEEecCCcEEEEE
Confidence 8665554 3566788999999998 899999887553 2455677888776 54556655554444444
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-11 Score=106.49 Aligned_cols=133 Identities=15% Similarity=0.181 Sum_probs=93.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||+|||+|..++.++..+..+|+++|+++.+++. .+.|..... ..++++..+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~~------------------~~~~~~~~~ 135 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQ-----AKTYLGEEG------------------KRVRNYFCC 135 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHH-----HHHHTGGGG------------------GGEEEEEEC
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHH-----HHHHhhhcC------------------CceEEEEEc
Confidence 578999999999999988777766699999999999843 333332110 124555555
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|+...+ ...++||+|++
T Consensus 136 d~~~~~---------------------------------------------------------------~~~~~fD~v~~ 152 (241)
T 2ex4_A 136 GLQDFT---------------------------------------------------------------PEPDSYDVIWI 152 (241)
T ss_dssp CGGGCC---------------------------------------------------------------CCSSCEEEEEE
T ss_pred ChhhcC---------------------------------------------------------------CCCCCEEEEEE
Confidence 543221 12358999999
Q ss_pred eccccccCC--HHHHHHHHHHhcCCCCeEEEEEEcccc----cc-----cCcchHHHHHHhhhcCceeEEE
Q 024311 195 TEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKNY----VG-----FNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 195 sD~iY~~~~--~~~L~~~l~~~L~~p~g~~~va~k~~~----fg-----~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
..++++... ...+++.+.++|+ |+|++++...... |. ......++.+.+++.||-..+.
T Consensus 153 ~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 153 QWVIGHLTDQHLAEFLRRCKGSLR-PNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhCCHHHHHHHHHHHHHhcC-CCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 999998766 5589999999999 8999988643211 00 0115789999999999854444
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.3e-11 Score=101.23 Aligned_cols=103 Identities=21% Similarity=0.364 Sum_probs=77.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+.+|||+|||+|..++.++..++ +|+++|+++++++. .+.|...+ ..++++..+
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~~~~-------------------~~~~~~~~~ 92 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRK-----AREYAKSR-------------------ESNVEFIVG 92 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHHHHT-------------------TCCCEEEEC
T ss_pred CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHH-----HHHHHHhc-------------------CCCceEEEC
Confidence 378999999999999998888887 99999999999843 44444322 124556555
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|....+ ...++||+|++
T Consensus 93 d~~~~~---------------------------------------------------------------~~~~~~D~v~~ 109 (227)
T 1ve3_A 93 DARKLS---------------------------------------------------------------FEDKTFDYVIF 109 (227)
T ss_dssp CTTSCC---------------------------------------------------------------SCTTCEEEEEE
T ss_pred chhcCC---------------------------------------------------------------CCCCcEEEEEE
Confidence 544321 13458999999
Q ss_pred ecc--ccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 195 TEI--PYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 195 sD~--iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
.++ .++......+++.+.++|+ |+|++++..
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~ 142 (227)
T 1ve3_A 110 IDSIVHFEPLELNQVFKEVRRVLK-PSGKFIMYF 142 (227)
T ss_dssp ESCGGGCCHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred cCchHhCCHHHHHHHHHHHHHHcC-CCcEEEEEe
Confidence 999 6666677889999999999 899888764
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4.8e-11 Score=106.28 Aligned_cols=106 Identities=14% Similarity=0.209 Sum_probs=81.3
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
.++.+|||+|||+|..++.++.. + ..+|+++|+++.+++. .+.+... ...++++
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~-------------------~~~~v~~ 76 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAE-----ARELFRL-------------------LPYDSEF 76 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHH-----HHHHHHS-------------------SSSEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHh-------------------cCCceEE
Confidence 46889999999999999888765 2 2489999999998843 3444321 1136777
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|..+.+ ..++||+
T Consensus 77 ~~~d~~~~~----------------------------------------------------------------~~~~fD~ 92 (284)
T 3gu3_A 77 LEGDATEIE----------------------------------------------------------------LNDKYDI 92 (284)
T ss_dssp EESCTTTCC----------------------------------------------------------------CSSCEEE
T ss_pred EEcchhhcC----------------------------------------------------------------cCCCeeE
Confidence 666655321 1348999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcc
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK 228 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~ 228 (269)
|++..++++....+.+++.+.++|+ |+|.+++....
T Consensus 93 v~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~ 128 (284)
T 3gu3_A 93 AICHAFLLHMTTPETMLQKMIHSVK-KGGKIICFEPH 128 (284)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHTEE-EEEEEEEEECC
T ss_pred EEECChhhcCCCHHHHHHHHHHHcC-CCCEEEEEecc
Confidence 9999999999999999999999998 89999887544
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-11 Score=101.22 Aligned_cols=129 Identities=11% Similarity=0.090 Sum_probs=91.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||+|||+|..+..++..+. +|++.|+++.+++.+ +.+. +++++..+
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-----~~~~-----------------------~~v~~~~~ 67 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEV-----KEKF-----------------------DSVITLSD 67 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHH-----HHHC-----------------------TTSEEESS
T ss_pred CCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHH-----HHhC-----------------------CCcEEEeC
Confidence 577999999999999998888776 999999999988432 2220 23444444
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
| .+ ...++||+|++
T Consensus 68 d---~~---------------------------------------------------------------~~~~~~D~v~~ 81 (170)
T 3i9f_A 68 P---KE---------------------------------------------------------------IPDNSVDFILF 81 (170)
T ss_dssp G---GG---------------------------------------------------------------SCTTCEEEEEE
T ss_pred C---CC---------------------------------------------------------------CCCCceEEEEE
Confidence 3 10 13458999999
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccccc-------CcchHHHHHHhhhcCceeEEEEeeecCcc
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF-------NNAARHLRSLVDEEGIFGAHLIKEMTDRD 262 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~-------~~~~~~F~~~~~~~g~~~~~~~~~~~~~~ 262 (269)
++++++......+++.+.++|+ |+|++++......... .-...++.+.++ ||-..+. .+.....
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--Gf~~~~~-~~~~~~~ 152 (170)
T 3i9f_A 82 ANSFHDMDDKQHVISEVKRILK-DDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS--NFVVEKR-FNPTPYH 152 (170)
T ss_dssp ESCSTTCSCHHHHHHHHHHHEE-EEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT--TEEEEEE-ECSSTTE
T ss_pred ccchhcccCHHHHHHHHHHhcC-CCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh--CcEEEEc-cCCCCce
Confidence 9999999999999999999999 8999988743221110 113567888888 8644443 4444333
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.6e-11 Score=103.86 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=98.4
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHH-HcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccC
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ 93 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa-~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~ 93 (269)
+...+.+.+.+.. ....+.+|||+|||+|...+.++ ..|. +|+++|+++.+++. .+.+....
T Consensus 48 a~~~~~~~~~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~-----a~~~~~~~------- 110 (287)
T 1kpg_A 48 AQIAKIDLALGKL----GLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANH-----VQQLVANS------- 110 (287)
T ss_dssp HHHHHHHHHHTTT----TCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHH-----HHHHHHTC-------
T ss_pred HHHHHHHHHHHHc----CCCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHH-----HHHHHHhc-------
Confidence 3344555555542 13467899999999999998777 5676 99999999998843 33333211
Q ss_pred CCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 024311 94 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS 173 (269)
Q Consensus 94 ~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs 173 (269)
...+++++..+|+..
T Consensus 111 ----------~~~~~~~~~~~d~~~------------------------------------------------------- 125 (287)
T 1kpg_A 111 ----------ENLRSKRVLLAGWEQ------------------------------------------------------- 125 (287)
T ss_dssp ----------CCCSCEEEEESCGGG-------------------------------------------------------
T ss_pred ----------CCCCCeEEEECChhh-------------------------------------------------------
Confidence 012345554444321
Q ss_pred hhhhhhcccccCCCCccEEEEecccccc--CCHHHHHHHHHHhcCCCCeEEEEEEccc----------------------
Q 024311 174 RAWERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKN---------------------- 229 (269)
Q Consensus 174 ~~W~~~~~~~~~~~~fDlIlasD~iY~~--~~~~~L~~~l~~~L~~p~g~~~va~k~~---------------------- 229 (269)
.+++||+|++.+++++. .....+++.+.++|+ |+|++++.....
T Consensus 126 -----------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (287)
T 1kpg_A 126 -----------FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLP-ADGVMLLHTITGLHPKEIHERGLPMSFTFARFLK 193 (287)
T ss_dssp -----------CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSC-TTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHH
T ss_pred -----------CCCCeeEEEEeCchhhcChHHHHHHHHHHHHhcC-CCCEEEEEEecCCCccccccccccccccccchhh
Confidence 11589999999999988 788999999999999 899988864221
Q ss_pred -----ccc--cCcchHHHHHHhhhcCceeEEE
Q 024311 230 -----YVG--FNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 230 -----~fg--~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
.|. .-.+..++.+.+++.||-..++
T Consensus 194 ~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~ 225 (287)
T 1kpg_A 194 FIVTEIFPGGRLPSIPMVQECASANGFTVTRV 225 (287)
T ss_dssp HHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEE
T ss_pred hHHheeCCCCCCCCHHHHHHHHHhCCcEEEEE
Confidence 010 0115678888899999854444
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-11 Score=106.70 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=73.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||+|||+|..+..++..++ +|+++|+++.+++.+ +.+. +++.+..+
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a-----~~~~-----------------------~~~~~~~~ 100 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIA-----RRRN-----------------------PDAVLHHG 100 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHH-----HHHC-----------------------TTSEEEEC
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHH-----HhhC-----------------------CCCEEEEC
Confidence 568999999999999999888876 899999999988432 2221 13455555
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|....+ ..++||+|++
T Consensus 101 d~~~~~----------------------------------------------------------------~~~~fD~v~~ 116 (263)
T 3pfg_A 101 DMRDFS----------------------------------------------------------------LGRRFSAVTC 116 (263)
T ss_dssp CTTTCC----------------------------------------------------------------CSCCEEEEEE
T ss_pred ChHHCC----------------------------------------------------------------ccCCcCEEEE
Confidence 544321 2458999999
Q ss_pred ec-ccccc---CCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 195 TE-IPYSV---TSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 195 sD-~iY~~---~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
.. ++++. .....+++.+.++|+ |+|++++.
T Consensus 117 ~~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~i~ 150 (263)
T 3pfg_A 117 MFSSIGHLAGQAELDAALERFAAHVL-PDGVVVVE 150 (263)
T ss_dssp CTTGGGGSCHHHHHHHHHHHHHHTEE-EEEEEEEC
T ss_pred cCchhhhcCCHHHHHHHHHHHHHhcC-CCcEEEEE
Confidence 97 88776 356678889999998 89999885
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.33 E-value=6.9e-12 Score=106.69 Aligned_cols=108 Identities=13% Similarity=0.206 Sum_probs=78.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||||||+|..++.++..++.+|++.|+++.+++. .+.|+..+. . .+++++.+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~-----a~~~~~~~~-----------------~-~~v~~~~~ 110 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQ-----LIKNLATLK-----------------A-GNARVVNS 110 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHH-----HHHHHHHTT-----------------C-CSEEEECS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHH-----HHHHHHHcC-----------------C-CcEEEEEC
Confidence 578999999999999998777787799999999999844 455554321 1 24566555
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|..+.. .....+||+|++
T Consensus 111 D~~~~~--------------------------------------------------------------~~~~~~fD~V~~ 128 (202)
T 2fpo_A 111 NAMSFL--------------------------------------------------------------AQKGTPHNIVFV 128 (202)
T ss_dssp CHHHHH--------------------------------------------------------------SSCCCCEEEEEE
T ss_pred CHHHHH--------------------------------------------------------------hhcCCCCCEEEE
Confidence 533210 012358999997
Q ss_pred eccccccCCHHHHHHHHHH--hcCCCCeEEEEEEccc
Q 024311 195 TEIPYSVTSLKKLYLLIKK--CLRPPYGVVYLATKKN 229 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~--~L~~p~g~~~va~k~~ 229 (269)
|..|.....+.+++.+.+ +|+ |+|++++.+...
T Consensus 129 -~~p~~~~~~~~~l~~l~~~~~L~-pgG~l~i~~~~~ 163 (202)
T 2fpo_A 129 -DPPFRRGLLEETINLLEDNGWLA-DEALIYVESEVE 163 (202)
T ss_dssp -CCSSSTTTHHHHHHHHHHTTCEE-EEEEEEEEEEGG
T ss_pred -CCCCCCCcHHHHHHHHHhcCccC-CCcEEEEEECCC
Confidence 555888888888888876 488 899999887654
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-10 Score=95.40 Aligned_cols=137 Identities=12% Similarity=0.143 Sum_probs=96.0
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccC
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ 93 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~ 93 (269)
.....+.+++..... ..++.+|||+|||+|..++.++. +..+|+++|+++.+++. .+.|+..+.
T Consensus 18 ~~~~~~~~~~~~~~~----~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~-----a~~~~~~~~------ 81 (183)
T 2yxd_A 18 ITKEEIRAVSIGKLN----LNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEV-----TKQNLAKFN------ 81 (183)
T ss_dssp CCCHHHHHHHHHHHC----CCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHH-----HHHHHHHTT------
T ss_pred cCHHHHHHHHHHHcC----CCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHH-----HHHHHHHcC------
Confidence 444556666666541 34678999999999999988887 55699999999999843 445543320
Q ss_pred CCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 024311 94 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS 173 (269)
Q Consensus 94 ~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs 173 (269)
. +++++..+|+.+ +
T Consensus 82 -----------~-~~~~~~~~d~~~-~----------------------------------------------------- 95 (183)
T 2yxd_A 82 -----------I-KNCQIIKGRAED-V----------------------------------------------------- 95 (183)
T ss_dssp -----------C-CSEEEEESCHHH-H-----------------------------------------------------
T ss_pred -----------C-CcEEEEECCccc-c-----------------------------------------------------
Confidence 1 245555554332 0
Q ss_pred hhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEE
Q 024311 174 RAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAH 253 (269)
Q Consensus 174 ~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~ 253 (269)
...++||+|++..+ ...+.+++.+.++ |+|.+++..... ....++.+.+++.|+ ..+
T Consensus 96 ----------~~~~~~D~i~~~~~----~~~~~~l~~~~~~---~gG~l~~~~~~~-----~~~~~~~~~l~~~g~-~~~ 152 (183)
T 2yxd_A 96 ----------LDKLEFNKAFIGGT----KNIEKIIEILDKK---KINHIVANTIVL-----ENAAKIINEFESRGY-NVD 152 (183)
T ss_dssp ----------GGGCCCSEEEECSC----SCHHHHHHHHHHT---TCCEEEEEESCH-----HHHHHHHHHHHHTTC-EEE
T ss_pred ----------ccCCCCcEEEECCc----ccHHHHHHHHhhC---CCCEEEEEeccc-----ccHHHHHHHHHHcCC-eEE
Confidence 01258999999888 6788899999887 789988887443 257789999999994 444
Q ss_pred EE
Q 024311 254 LI 255 (269)
Q Consensus 254 ~~ 255 (269)
.+
T Consensus 153 ~~ 154 (183)
T 2yxd_A 153 AV 154 (183)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.4e-12 Score=112.89 Aligned_cols=83 Identities=24% Similarity=0.396 Sum_probs=53.9
Q ss_pred CCCCccEEEEecccccc------CCHHHHHHHHHHhcCCCCeEEEEEEcc----------------cccccCcchHHHHH
Q 024311 185 GEGGYDVILLTEIPYSV------TSLKKLYLLIKKCLRPPYGVVYLATKK----------------NYVGFNNAARHLRS 242 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~------~~~~~L~~~l~~~L~~p~g~~~va~k~----------------~~fg~~~~~~~F~~ 242 (269)
..++||+|++..++.+. .....+++.+.++|+ |+|++++.... .|....-...+|.+
T Consensus 174 ~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~Lk-pGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~ 252 (292)
T 3g07_A 174 QTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLR-PGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSS 252 (292)
T ss_dssp CCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHH
T ss_pred cCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhC-CCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHH
Confidence 45699999999998433 367789999999999 89999885210 01111112468889
Q ss_pred Hhhh--cCceeEEEEeeec------CcceEEEEe
Q 024311 243 LVDE--EGIFGAHLIKEMT------DRDIWKFFL 268 (269)
Q Consensus 243 ~~~~--~g~~~~~~~~~~~------~~~i~~~~~ 268 (269)
.+.+ .||-..+++.... ++.|+-|.+
T Consensus 253 ~L~~~~~GF~~~~~~~~~~~~~~g~~r~i~~~~k 286 (292)
T 3g07_A 253 YLTSPDVGFSSYELVATPHNTSKGFQRPVYLFHK 286 (292)
T ss_dssp HHTSTTTCCCEEEEC-----------CCCEEEEC
T ss_pred HHHhcCCCceEEEEeccCCCCCCCccceEEEEEc
Confidence 9998 8986666654321 466664443
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.6e-11 Score=101.69 Aligned_cols=127 Identities=15% Similarity=0.194 Sum_probs=83.7
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhcc
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSR 92 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~ 92 (269)
+-.....+++.+... ..++++|||+|||+|..+..++..+. .+|+++|+++.+++. .+.|+..+.
T Consensus 12 ~~~~~~~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~~----- 77 (219)
T 3jwg_A 12 NLNQQRLGTVVAVLK----SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLER-----AKDRLKIDR----- 77 (219)
T ss_dssp CHHHHHHHHHHHHHH----HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHH-----HHHHHTGGG-----
T ss_pred cchHHHHHHHHHHHh----hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHH-----HHHHHHhhc-----
Confidence 334444555555432 13578999999999999988887664 599999999999844 333332110
Q ss_pred CCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 024311 93 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG 172 (269)
Q Consensus 93 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~g 172 (269)
+. .....++++..+|....+
T Consensus 78 -----~~---~~~~~~v~~~~~d~~~~~---------------------------------------------------- 97 (219)
T 3jwg_A 78 -----LP---EMQRKRISLFQSSLVYRD---------------------------------------------------- 97 (219)
T ss_dssp -----SC---HHHHTTEEEEECCSSSCC----------------------------------------------------
T ss_pred -----cc---cccCcceEEEeCcccccc----------------------------------------------------
Confidence 00 000024666666653211
Q ss_pred chhhhhhcccccCCCCccEEEEeccccccCCH--HHHHHHHHHhcCCCCeEEEEEE
Q 024311 173 SRAWERASEADQGEGGYDVILLTEIPYSVTSL--KKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 173 s~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~--~~L~~~l~~~L~~p~g~~~va~ 226 (269)
...++||+|++.+++++.... ..+++.+.++|+ |+|++++..
T Consensus 98 -----------~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~~i~~~ 141 (219)
T 3jwg_A 98 -----------KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTR-PQTVIVSTP 141 (219)
T ss_dssp -----------GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTC-CSEEEEEEE
T ss_pred -----------cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhC-CCEEEEEcc
Confidence 123589999999999998744 689999999998 788665543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.9e-11 Score=105.50 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=76.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcC---CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKG---AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH 110 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~g---a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 110 (269)
-.|.+|||||||+|...+.+++.. ..+|++.|+++.+|+.+ +.++... ....+|+
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A-----~~~~~~~-----------------~~~~~v~ 126 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERC-----RRHIDAY-----------------KAPTPVD 126 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHH-----HHHHHTS-----------------CCSSCEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHH-----HHHHHhh-----------------ccCceEE
Confidence 367899999999999998877642 12899999999999543 3443211 0224577
Q ss_pred eecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 024311 111 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 190 (269)
Q Consensus 111 ~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fD 190 (269)
+..+|..+. ..++||
T Consensus 127 ~~~~D~~~~-----------------------------------------------------------------~~~~~d 141 (261)
T 4gek_A 127 VIEGDIRDI-----------------------------------------------------------------AIENAS 141 (261)
T ss_dssp EEESCTTTC-----------------------------------------------------------------CCCSEE
T ss_pred Eeecccccc-----------------------------------------------------------------cccccc
Confidence 766664432 124699
Q ss_pred EEEEeccccccC--CHHHHHHHHHHhcCCCCeEEEEEEc
Q 024311 191 VILLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATK 227 (269)
Q Consensus 191 lIlasD~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~k 227 (269)
+|++.-++++.. ....+++.+.++|+ |+|+++++.+
T Consensus 142 ~v~~~~~l~~~~~~~~~~~l~~i~~~Lk-pGG~lii~e~ 179 (261)
T 4gek_A 142 MVVLNFTLQFLEPSERQALLDKIYQGLN-PGGALVLSEK 179 (261)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred cceeeeeeeecCchhHhHHHHHHHHHcC-CCcEEEEEec
Confidence 999999998754 33568999999999 9999988744
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.32 E-value=8.1e-12 Score=103.21 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=89.6
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccC
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ 93 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~ 93 (269)
+....+++.+.+... ...++.+|||+|||+|..++.++..++.+|+++|+++.+++ ..+.|+..+.
T Consensus 26 p~~~~~~~~~~~~l~---~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~-----~a~~~~~~~~------ 91 (187)
T 2fhp_A 26 PTTDKVKESIFNMIG---PYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALK-----VIKENIAITK------ 91 (187)
T ss_dssp CCCHHHHHHHHHHHC---SCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHH-----HHHHHHHHHT------
T ss_pred cCHHHHHHHHHHHHH---hhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHH-----HHHHHHHHhC------
Confidence 445567777666542 23478899999999999999888887779999999999984 4455554331
Q ss_pred CCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 024311 94 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS 173 (269)
Q Consensus 94 ~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs 173 (269)
+.++++++.+|+.+.... +
T Consensus 92 -----------~~~~~~~~~~d~~~~~~~-----------------------------------------------~--- 110 (187)
T 2fhp_A 92 -----------EPEKFEVRKMDANRALEQ-----------------------------------------------F--- 110 (187)
T ss_dssp -----------CGGGEEEEESCHHHHHHH-----------------------------------------------H---
T ss_pred -----------CCcceEEEECcHHHHHHH-----------------------------------------------H---
Confidence 123567766665432100 0
Q ss_pred hhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHH--HHhcCCCCeEEEEEEccc
Q 024311 174 RAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLI--KKCLRPPYGVVYLATKKN 229 (269)
Q Consensus 174 ~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l--~~~L~~p~g~~~va~k~~ 229 (269)
.....+||+|++ +..|.....+.+++.+ .++|+ |+|++++.....
T Consensus 111 ---------~~~~~~fD~i~~-~~~~~~~~~~~~~~~l~~~~~L~-~gG~l~~~~~~~ 157 (187)
T 2fhp_A 111 ---------YEEKLQFDLVLL-DPPYAKQEIVSQLEKMLERQLLT-NEAVIVCETDKT 157 (187)
T ss_dssp ---------HHTTCCEEEEEE-CCCGGGCCHHHHHHHHHHTTCEE-EEEEEEEEEETT
T ss_pred ---------HhcCCCCCEEEE-CCCCCchhHHHHHHHHHHhcccC-CCCEEEEEeCCc
Confidence 012458999997 4557777888888888 66788 899998876543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-11 Score=99.74 Aligned_cols=124 Identities=18% Similarity=0.244 Sum_probs=89.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||+|||+|..++.++..+. +|+++|+++.+++. .+.|. +++.+...
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~-----a~~~~-----------------------~~~~~~~~ 96 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDY-----AKQDF-----------------------PEARWVVG 96 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHC-----------------------TTSEEEEC
T ss_pred CCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHH-----HHHhC-----------------------CCCcEEEc
Confidence 678999999999999988888876 89999999998843 22222 12344444
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|....+ ...++||+|++
T Consensus 97 d~~~~~---------------------------------------------------------------~~~~~~D~i~~ 113 (195)
T 3cgg_A 97 DLSVDQ---------------------------------------------------------------ISETDFDLIVS 113 (195)
T ss_dssp CTTTSC---------------------------------------------------------------CCCCCEEEEEE
T ss_pred ccccCC---------------------------------------------------------------CCCCceeEEEE
Confidence 433211 12458999999
Q ss_pred e-cccccc--CCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEE
Q 024311 195 T-EIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 195 s-D~iY~~--~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
+ ++++.. +....+++.+.++|+ |+|++++...... +-...++.+.+++.|+-..+.
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~-~~G~l~~~~~~~~---~~~~~~~~~~l~~~Gf~~~~~ 172 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALG-ADGRAVIGFGAGR---GWVFGDFLEVAERVGLELENA 172 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEETTS---SCCHHHHHHHHHHHTEEEEEE
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhC-CCCEEEEEeCCCC---CcCHHHHHHHHHHcCCEEeee
Confidence 8 777655 445778899999998 8999988754321 236789999999999754444
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-11 Score=103.13 Aligned_cols=131 Identities=18% Similarity=0.189 Sum_probs=91.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+.+|||+|||+|..+..++..++ +|+++|+++.+++.+ +.+ .++.+...
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-----~~~------------------------~~~~~~~~ 101 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAA-----RAA------------------------GAGEVHLA 101 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHH-----HHT------------------------CSSCEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHH-----HHh------------------------cccccchh
Confidence 568999999999999998888877 899999999988432 222 01222222
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
+...... . ......+||+|++
T Consensus 102 ~~~~~~~------------------------------------------------~-----------~~~~~~~fD~v~~ 122 (227)
T 3e8s_A 102 SYAQLAE------------------------------------------------A-----------KVPVGKDYDLICA 122 (227)
T ss_dssp CHHHHHT------------------------------------------------T-----------CSCCCCCEEEEEE
T ss_pred hHHhhcc------------------------------------------------c-----------ccccCCCccEEEE
Confidence 3221100 0 0013446999999
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc----------------ccC----------cchHHHHHHhhhcC
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV----------------GFN----------NAARHLRSLVDEEG 248 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f----------------g~~----------~~~~~F~~~~~~~g 248 (269)
+.+++ ......+++.+.++|+ |+|++++....... +.. -+..++.+.+++.|
T Consensus 123 ~~~l~-~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG 200 (227)
T 3e8s_A 123 NFALL-HQDIIELLSAMRTLLV-PGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAG 200 (227)
T ss_dssp ESCCC-SSCCHHHHHHHHHTEE-EEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTT
T ss_pred Cchhh-hhhHHHHHHHHHHHhC-CCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHHHcC
Confidence 99999 8888999999999999 89999987542110 100 15789999999999
Q ss_pred ceeEEEEe
Q 024311 249 IFGAHLIK 256 (269)
Q Consensus 249 ~~~~~~~~ 256 (269)
|-..++..
T Consensus 201 f~~~~~~~ 208 (227)
T 3e8s_A 201 LRLVSLQE 208 (227)
T ss_dssp EEEEEEEC
T ss_pred CeEEEEec
Confidence 86555543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.30 E-value=7.8e-11 Score=101.07 Aligned_cols=101 Identities=21% Similarity=0.211 Sum_probs=74.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||+|||+|..+..++..+. +|+++|+++.+++. .+.+.... ..++++..+
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~-----a~~~~~~~-------------------~~~~~~~~~ 91 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSE-----AENKFRSQ-------------------GLKPRLACQ 91 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHH-----HHHHHHHT-------------------TCCCEEECC
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHH-----HHHHHhhc-------------------CCCeEEEec
Confidence 678999999999999998888876 89999999999844 33333221 013444444
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|....+ ..++||+|++
T Consensus 92 d~~~~~----------------------------------------------------------------~~~~fD~v~~ 107 (246)
T 1y8c_A 92 DISNLN----------------------------------------------------------------INRKFDLITC 107 (246)
T ss_dssp CGGGCC----------------------------------------------------------------CSCCEEEEEE
T ss_pred ccccCC----------------------------------------------------------------ccCCceEEEE
Confidence 432210 1258999999
Q ss_pred ec-ccccc---CCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 195 TE-IPYSV---TSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 195 sD-~iY~~---~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
+. ++++. .....+++.+.++|+ |+|++++.
T Consensus 108 ~~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~ 141 (246)
T 1y8c_A 108 CLDSTNYIIDSDDLKKYFKAVSNHLK-EGGVFIFD 141 (246)
T ss_dssp CTTGGGGCCSHHHHHHHHHHHHTTEE-EEEEEEEE
T ss_pred cCccccccCCHHHHHHHHHHHHHhcC-CCcEEEEE
Confidence 97 98877 567788888899998 89998874
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=104.87 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=82.9
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCC
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPES 96 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~ 96 (269)
..+.+++.... ...++.+|||+|||+|..++.++..+. +|+++|+++.+++. .+.|...
T Consensus 37 ~~~~~~l~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~~~----------- 95 (216)
T 3ofk_A 37 ERHTQLLRLSL----SSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGR-----ACQRTKR----------- 95 (216)
T ss_dssp HHHHHHHHHHT----TTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHH-----HHHHTTT-----------
T ss_pred HHHHHHHHHHc----ccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHH-----HHHhccc-----------
Confidence 34445554432 233678999999999999999888876 89999999998843 3333211
Q ss_pred CCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhh
Q 024311 97 SLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAW 176 (269)
Q Consensus 97 ~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W 176 (269)
.+++++..+|....+
T Consensus 96 ---------~~~~~~~~~d~~~~~-------------------------------------------------------- 110 (216)
T 3ofk_A 96 ---------WSHISWAATDILQFS-------------------------------------------------------- 110 (216)
T ss_dssp ---------CSSEEEEECCTTTCC--------------------------------------------------------
T ss_pred ---------CCCeEEEEcchhhCC--------------------------------------------------------
Confidence 125666666554321
Q ss_pred hhhcccccCCCCccEEEEeccccccCCHH---HHHHHHHHhcCCCCeEEEEEE
Q 024311 177 ERASEADQGEGGYDVILLTEIPYSVTSLK---KLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 177 ~~~~~~~~~~~~fDlIlasD~iY~~~~~~---~L~~~l~~~L~~p~g~~~va~ 226 (269)
..++||+|+++.++++....+ .+++.+.++|+ |+|++++++
T Consensus 111 --------~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~ 154 (216)
T 3ofk_A 111 --------TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLA-PGGHLVFGS 154 (216)
T ss_dssp --------CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred --------CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcC-CCCEEEEEe
Confidence 245899999999999888774 55888888998 899999875
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-10 Score=104.32 Aligned_cols=131 Identities=15% Similarity=0.086 Sum_probs=92.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
-.+.+|||+|||+|..++.++.. |. +|+++|+++.+++. .+.+.... .+..++++.
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~v~~~ 127 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAH-----DKAMFDEV-----------------DSPRRKEVR 127 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEECCHHHHHH-----HHHHHHHS-----------------CCSSCEEEE
T ss_pred CCcCEEEEeeccCcHHHHHHHHhCCC-EEEEEECCHHHHHH-----HHHHHHhc-----------------CCCCceEEE
Confidence 36789999999999999888876 74 89999999999844 34443221 022345555
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|+.+ ..++||+|
T Consensus 128 ~~d~~~------------------------------------------------------------------~~~~fD~v 141 (302)
T 3hem_A 128 IQGWEE------------------------------------------------------------------FDEPVDRI 141 (302)
T ss_dssp ECCGGG------------------------------------------------------------------CCCCCSEE
T ss_pred ECCHHH------------------------------------------------------------------cCCCccEE
Confidence 554321 14589999
Q ss_pred EEecccccc---------CCHHHHHHHHHHhcCCCCeEEEEEEccc---------------------------ccc--cC
Q 024311 193 LLTEIPYSV---------TSLKKLYLLIKKCLRPPYGVVYLATKKN---------------------------YVG--FN 234 (269)
Q Consensus 193 lasD~iY~~---------~~~~~L~~~l~~~L~~p~g~~~va~k~~---------------------------~fg--~~ 234 (269)
++..++++. ...+.+++.+.++|+ |+|++++..-.. .|. .-
T Consensus 142 ~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 220 (302)
T 3hem_A 142 VSLGAFEHFADGAGDAGFERYDTFFKKFYNLTP-DDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGRL 220 (302)
T ss_dssp EEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSC-TTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCCC
T ss_pred EEcchHHhcCccccccchhHHHHHHHHHHHhcC-CCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCCCC
Confidence 999999887 445889999999998 899988864211 010 11
Q ss_pred cchHHHHHHhhhcCceeEEE
Q 024311 235 NAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 235 ~~~~~F~~~~~~~g~~~~~~ 254 (269)
.+..++.+.+++.||-..++
T Consensus 221 ~s~~~~~~~l~~aGf~~~~~ 240 (302)
T 3hem_A 221 PRISQVDYYSSNAGWKVERY 240 (302)
T ss_dssp CCHHHHHHHHHHHTCEEEEE
T ss_pred CCHHHHHHHHHhCCcEEEEE
Confidence 24678888999999754444
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.30 E-value=6e-12 Score=107.02 Aligned_cols=110 Identities=19% Similarity=0.324 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCC-Ceeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLA-PSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~ 113 (269)
++.+|||+|||+|..++.++..++.+|++.|+++++++ ..+.|+..+. +. .+++++.
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~-----~a~~~~~~~~-----------------~~~~~v~~~~ 110 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVAN-----QLKKNLQTLK-----------------CSSEQAEVIN 110 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHH-----HHHHHHHHTT-----------------CCTTTEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHH-----HHHHHHHHhC-----------------CCccceEEEE
Confidence 57899999999999999877778779999999999984 4455554321 11 2456655
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCC-ccEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGG-YDVI 192 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~-fDlI 192 (269)
+|..+.. + ....++ ||+|
T Consensus 111 ~d~~~~~--------------------------------------------------~-----------~~~~~~~fD~I 129 (201)
T 2ift_A 111 QSSLDFL--------------------------------------------------K-----------QPQNQPHFDVV 129 (201)
T ss_dssp SCHHHHT--------------------------------------------------T-----------SCCSSCCEEEE
T ss_pred CCHHHHH--------------------------------------------------H-----------hhccCCCCCEE
Confidence 5532210 0 012357 9999
Q ss_pred EEeccccccCCHHHHHHHH--HHhcCCCCeEEEEEEccc
Q 024311 193 LLTEIPYSVTSLKKLYLLI--KKCLRPPYGVVYLATKKN 229 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l--~~~L~~p~g~~~va~k~~ 229 (269)
++ |..|.....+.+++.+ .++|+ |+|++++.+...
T Consensus 130 ~~-~~~~~~~~~~~~l~~~~~~~~Lk-pgG~l~i~~~~~ 166 (201)
T 2ift_A 130 FL-DPPFHFNLAEQAISLLCENNWLK-PNALIYVETEKD 166 (201)
T ss_dssp EE-CCCSSSCHHHHHHHHHHHTTCEE-EEEEEEEEEESS
T ss_pred EE-CCCCCCccHHHHHHHHHhcCccC-CCcEEEEEECCC
Confidence 98 4557777788888888 45688 899999887654
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=6e-11 Score=97.69 Aligned_cols=140 Identities=16% Similarity=0.190 Sum_probs=96.2
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCC
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQP 94 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~ 94 (269)
....+..++.... ...++.+|||+|||+|..++.++..+ .+|+++|+++.+++ ..+.|+..+.
T Consensus 17 ~~~~~~~~~~~~~----~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~-----~a~~~~~~~~------- 79 (192)
T 1l3i_A 17 TAMEVRCLIMCLA----EPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAIS-----TTEMNLQRHG------- 79 (192)
T ss_dssp CCHHHHHHHHHHH----CCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHH-----HHHHHHHHTT-------
T ss_pred ChHHHHHHHHHhc----CCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHH-----HHHHHHHHcC-------
Confidence 3445556665543 23467899999999999999988877 59999999999984 3445543320
Q ss_pred CCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCch
Q 024311 95 ESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSR 174 (269)
Q Consensus 95 ~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~ 174 (269)
...++++..+|+.+. +
T Consensus 80 ----------~~~~~~~~~~d~~~~--------------------------------------------------~---- 95 (192)
T 1l3i_A 80 ----------LGDNVTLMEGDAPEA--------------------------------------------------L---- 95 (192)
T ss_dssp ----------CCTTEEEEESCHHHH--------------------------------------------------H----
T ss_pred ----------CCcceEEEecCHHHh--------------------------------------------------c----
Confidence 112455544443220 0
Q ss_pred hhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEE
Q 024311 175 AWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 175 ~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
....+||+|+++.++. ....+++.+.++|+ |+|++++..... ....++.+.+++.|+ ..+.
T Consensus 96 ---------~~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~-~gG~l~~~~~~~-----~~~~~~~~~l~~~g~-~~~~ 156 (192)
T 1l3i_A 96 ---------CKIPDIDIAVVGGSGG---ELQEILRIIKDKLK-PGGRIIVTAILL-----ETKFEAMECLRDLGF-DVNI 156 (192)
T ss_dssp ---------TTSCCEEEEEESCCTT---CHHHHHHHHHHTEE-EEEEEEEEECBH-----HHHHHHHHHHHHTTC-CCEE
T ss_pred ---------ccCCCCCEEEECCchH---HHHHHHHHHHHhcC-CCcEEEEEecCc-----chHHHHHHHHHHCCC-ceEE
Confidence 0114899999876653 56889999999998 899988876543 256788999999997 4443
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.30 E-value=4.2e-11 Score=101.95 Aligned_cols=111 Identities=17% Similarity=0.221 Sum_probs=76.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+++|||+|||+|..+..++..+. .+|+++|+++.+++. .+.|+..+. +. .....++++..
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~~----------~~---~~~~~~v~~~~ 90 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEI-----AQERLDRLR----------LP---RNQWERLQLIQ 90 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHH-----HHHHHTTCC----------CC---HHHHTTEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHH-----HHHHHHHhc----------CC---cccCcceEEEe
Confidence 577999999999999988887654 599999999999844 344432110 00 00012466666
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|....+ ...++||+|+
T Consensus 91 ~d~~~~~---------------------------------------------------------------~~~~~fD~v~ 107 (217)
T 3jwh_A 91 GALTYQD---------------------------------------------------------------KRFHGYDAAT 107 (217)
T ss_dssp CCTTSCC---------------------------------------------------------------GGGCSCSEEE
T ss_pred CCccccc---------------------------------------------------------------ccCCCcCEEe
Confidence 6543211 1235899999
Q ss_pred EeccccccC--CHHHHHHHHHHhcCCCCeEEEEEEc
Q 024311 194 LTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATK 227 (269)
Q Consensus 194 asD~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~k 227 (269)
+.+++++.. ....+++.+.++|+ |+|++++...
T Consensus 108 ~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~ 142 (217)
T 3jwh_A 108 VIEVIEHLDLSRLGAFERVLFEFAQ-PKIVIVTTPN 142 (217)
T ss_dssp EESCGGGCCHHHHHHHHHHHHTTTC-CSEEEEEEEB
T ss_pred eHHHHHcCCHHHHHHHHHHHHHHcC-CCEEEEEccC
Confidence 999999876 44789999999998 8896666543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.29 E-value=7.6e-11 Score=109.91 Aligned_cols=150 Identities=23% Similarity=0.265 Sum_probs=100.5
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH 110 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 110 (269)
..++.+|||||||+|..++.++.. ...+|+++|+++.+++.+ +.|+..+....... ...++++
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a-----~~~~~~~~~~~~g~----------~~~~~v~ 145 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVA-----RKYVEYHAEKFFGS----------PSRSNVR 145 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHH-----HHTHHHHHHHHHSS----------TTCCCEE
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHH-----HHHHHHhhhhcccc----------cCCCceE
Confidence 347889999999999999877664 234899999999998543 33333221000000 0114678
Q ss_pred eecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 024311 111 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 190 (269)
Q Consensus 111 ~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fD 190 (269)
|..+|+....... ......++||
T Consensus 146 ~~~~d~~~l~~~~---------------------------------------------------------~~~~~~~~fD 168 (383)
T 4fsd_A 146 FLKGFIENLATAE---------------------------------------------------------PEGVPDSSVD 168 (383)
T ss_dssp EEESCTTCGGGCB---------------------------------------------------------SCCCCTTCEE
T ss_pred EEEccHHHhhhcc---------------------------------------------------------cCCCCCCCEE
Confidence 8888776542100 0002356899
Q ss_pred EEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc-------------c----cCcchHHHHHHhhhcCceeEE
Q 024311 191 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV-------------G----FNNAARHLRSLVDEEGIFGAH 253 (269)
Q Consensus 191 lIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f-------------g----~~~~~~~F~~~~~~~g~~~~~ 253 (269)
+|++..++++....+.+++.+.++|+ |+|++++....... + ..-...++.+.+++.||-..+
T Consensus 169 ~V~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~ 247 (383)
T 4fsd_A 169 IVISNCVCNLSTNKLALFKEIHRVLR-DGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVR 247 (383)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTTCCCEE
T ss_pred EEEEccchhcCCCHHHHHHHHHHHcC-CCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCCCceEE
Confidence 99999999999999999999999999 89999887421110 0 012358899999999985554
Q ss_pred EE
Q 024311 254 LI 255 (269)
Q Consensus 254 ~~ 255 (269)
++
T Consensus 248 ~~ 249 (383)
T 4fsd_A 248 LV 249 (383)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-11 Score=107.69 Aligned_cols=107 Identities=19% Similarity=0.179 Sum_probs=80.9
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCC
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESS 97 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~ 97 (269)
.|.++|.+.. -.+.+|||||||+|..+..++..+. +|+++|.++.+++.+.
T Consensus 28 ~l~~~l~~~~------~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~---------------------- 78 (257)
T 4hg2_A 28 ALFRWLGEVA------PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQAL---------------------- 78 (257)
T ss_dssp HHHHHHHHHS------SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCC----------------------
T ss_pred HHHHHHHHhc------CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhh----------------------
Confidence 4667777653 1356999999999999988888876 8999999999884320
Q ss_pred CCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhh
Q 024311 98 LTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWE 177 (269)
Q Consensus 98 ~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~ 177 (269)
..+++.+..++.++++
T Consensus 79 -------~~~~v~~~~~~~e~~~--------------------------------------------------------- 94 (257)
T 4hg2_A 79 -------RHPRVTYAVAPAEDTG--------------------------------------------------------- 94 (257)
T ss_dssp -------CCTTEEEEECCTTCCC---------------------------------------------------------
T ss_pred -------hcCCceeehhhhhhhc---------------------------------------------------------
Confidence 1135677666655432
Q ss_pred hhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 178 RASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 178 ~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
..+++||+|+++.++++. ..+.+++.++++|+ |+|++.+.
T Consensus 95 ------~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLk-pgG~l~~~ 134 (257)
T 4hg2_A 95 ------LPPASVDVAIAAQAMHWF-DLDRFWAELRRVAR-PGAVFAAV 134 (257)
T ss_dssp ------CCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEE-EEEEEEEE
T ss_pred ------ccCCcccEEEEeeehhHh-hHHHHHHHHHHHcC-CCCEEEEE
Confidence 245689999999999776 58889999999999 88876554
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.29 E-value=7.6e-12 Score=103.13 Aligned_cols=129 Identities=19% Similarity=0.210 Sum_probs=82.9
Q ss_pred eeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhc
Q 024311 12 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS 91 (269)
Q Consensus 12 vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~ 91 (269)
.-+....+.+.+..... ...++++|||+|||+|..++.++..+..+|+++|+++.+++ ..+.|+..+.
T Consensus 11 ~rp~~~~~~~~~~~~l~---~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~-----~a~~~~~~~~---- 78 (177)
T 2esr_A 11 TRPTSDKVRGAIFNMIG---PYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQA-----IIQDNIIMTK---- 78 (177)
T ss_dssp -------CHHHHHHHHC---SCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHH-----HHHHHHHTTT----
T ss_pred CCcCHHHHHHHHHHHHH---hhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHH-----HHHHHHHHcC----
Confidence 33445555666655432 13478899999999999999888887779999999999984 4455553220
Q ss_pred cCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 024311 92 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS 171 (269)
Q Consensus 92 ~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (269)
+..++++..+|+.+..
T Consensus 79 -------------~~~~~~~~~~d~~~~~--------------------------------------------------- 94 (177)
T 2esr_A 79 -------------AENRFTLLKMEAERAI--------------------------------------------------- 94 (177)
T ss_dssp -------------CGGGEEEECSCHHHHH---------------------------------------------------
T ss_pred -------------CCCceEEEECcHHHhH---------------------------------------------------
Confidence 1234666555543210
Q ss_pred CchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHH--HhcCCCCeEEEEEEccc
Q 024311 172 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIK--KCLRPPYGVVYLATKKN 229 (269)
Q Consensus 172 gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~--~~L~~p~g~~~va~k~~ 229 (269)
+ ....+||+|++ +..|.....+.+++.+. ++|+ |+|++++.+...
T Consensus 95 ---------~--~~~~~fD~i~~-~~~~~~~~~~~~~~~l~~~~~L~-~gG~l~~~~~~~ 141 (177)
T 2esr_A 95 ---------D--CLTGRFDLVFL-DPPYAKETIVATIEALAAKNLLS-EQVMVVCETDKT 141 (177)
T ss_dssp ---------H--HBCSCEEEEEE-CCSSHHHHHHHHHHHHHHTTCEE-EEEEEEEEEETT
T ss_pred ---------H--hhcCCCCEEEE-CCCCCcchHHHHHHHHHhCCCcC-CCcEEEEEECCc
Confidence 0 02246999997 55565556677777776 7788 899999886543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.4e-11 Score=98.92 Aligned_cols=136 Identities=18% Similarity=0.157 Sum_probs=94.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+.+|||+|||+|..+..++..+. +|++.|+++.+++.+.. . ..+++++..+
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~---------~------------------~~~~~~~~~~ 97 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR---------H------------------GLDNVEFRQQ 97 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG---------G------------------CCTTEEEEEC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh---------c------------------CCCCeEEEec
Confidence 567999999999999988888876 89999999998854311 0 0124566555
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|.... ...++||+|++
T Consensus 98 d~~~~----------------------------------------------------------------~~~~~~D~v~~ 113 (218)
T 3ou2_A 98 DLFDW----------------------------------------------------------------TPDRQWDAVFF 113 (218)
T ss_dssp CTTSC----------------------------------------------------------------CCSSCEEEEEE
T ss_pred ccccC----------------------------------------------------------------CCCCceeEEEE
Confidence 54321 13458999999
Q ss_pred eccccccCC--HHHHHHHHHHhcCCCCeEEEEEEccc--------c-----------ccc---------CcchHHHHHHh
Q 024311 195 TEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKN--------Y-----------VGF---------NNAARHLRSLV 244 (269)
Q Consensus 195 sD~iY~~~~--~~~L~~~l~~~L~~p~g~~~va~k~~--------~-----------fg~---------~~~~~~F~~~~ 244 (269)
+.++++... ...+++.+.++|+ |+|++++..... + ++. -....++.+.+
T Consensus 114 ~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 192 (218)
T 3ou2_A 114 AHWLAHVPDDRFEAFWESVRSAVA-PGGVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERL 192 (218)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEECCCC------------CEEEEECTTSCEEEEECCCCCHHHHHHHH
T ss_pred echhhcCCHHHHHHHHHHHHHHcC-CCeEEEEEeCCCCccccchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHH
Confidence 999998877 3788999999998 899988874311 0 000 01457889999
Q ss_pred hhcCceeEEEEeeecCcceEE
Q 024311 245 DEEGIFGAHLIKEMTDRDIWK 265 (269)
Q Consensus 245 ~~~g~~~~~~~~~~~~~~i~~ 265 (269)
++.|| ++.. ++..+.....
T Consensus 193 ~~aGf-~v~~-~~~~~~~~~~ 211 (218)
T 3ou2_A 193 TALGW-SCSV-DEVHPGFLYA 211 (218)
T ss_dssp HHTTE-EEEE-EEEETTEEEE
T ss_pred HHCCC-EEEe-eeccccceEe
Confidence 99997 3333 5555554443
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1e-11 Score=108.17 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=49.2
Q ss_pred CCccEEEEecccc----ccCCHHHHHHHHHHhcCCCCeEEEEEEcc--ccccc--------CcchHHHHHHhhhcCceeE
Q 024311 187 GGYDVILLTEIPY----SVTSLKKLYLLIKKCLRPPYGVVYLATKK--NYVGF--------NNAARHLRSLVDEEGIFGA 252 (269)
Q Consensus 187 ~~fDlIlasD~iY----~~~~~~~L~~~l~~~L~~p~g~~~va~k~--~~fg~--------~~~~~~F~~~~~~~g~~~~ 252 (269)
++||+|+++.+++ +......+++.+.++|+ |+|++++.... .++.. .-...++.+.+++.||-..
T Consensus 156 ~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~ 234 (265)
T 2i62_A 156 PPADCLLSTLCLDAACPDLPAYRTALRNLGSLLK-PGGFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIE 234 (265)
T ss_dssp CCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEE
T ss_pred CCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCC-CCcEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEE
Confidence 6899999999999 66677889999999999 89998886421 11111 1135588899999998544
Q ss_pred EE
Q 024311 253 HL 254 (269)
Q Consensus 253 ~~ 254 (269)
++
T Consensus 235 ~~ 236 (265)
T 2i62_A 235 QF 236 (265)
T ss_dssp EE
T ss_pred EE
Confidence 44
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.6e-11 Score=106.41 Aligned_cols=108 Identities=24% Similarity=0.151 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.++.+|||+|||+|..++.++..+..+|+++|+++.+++. .+.+.... ....++++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~v~~~~ 120 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSIND-----ARVRARNM-----------------KRRFKVFFRA 120 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHH-----HHHHHHTS-----------------CCSSEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHH-----HHHHHHhc-----------------CCCccEEEEE
Confidence 3678999999999988888877777799999999999843 33343211 0123566666
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|....+. ...++||+|+
T Consensus 121 ~d~~~~~~--------------------------------------------------------------~~~~~fD~v~ 138 (298)
T 1ri5_A 121 QDSYGRHM--------------------------------------------------------------DLGKEFDVIS 138 (298)
T ss_dssp SCTTTSCC--------------------------------------------------------------CCSSCEEEEE
T ss_pred CCcccccc--------------------------------------------------------------CCCCCcCEEE
Confidence 66544210 0245899999
Q ss_pred Eeccccc----cCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 194 LTEIPYS----VTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 194 asD~iY~----~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+..++++ ......+++.+.++|+ |+|++++..
T Consensus 139 ~~~~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~ 174 (298)
T 1ri5_A 139 SQFSFHYAFSTSESLDIAQRNIARHLR-PGGYFIMTV 174 (298)
T ss_dssp EESCGGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred ECchhhhhcCCHHHHHHHHHHHHHhcC-CCCEEEEEE
Confidence 9999865 4556778899999998 899998875
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-10 Score=104.68 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=81.7
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCC
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE 95 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~ 95 (269)
..+.+.+.+.. ....+.+|||+|||+|...+.++.. |+ +|+++|+++.+++. .+.+....
T Consensus 76 ~~~~~~~~~~~----~~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~-----a~~~~~~~--------- 136 (318)
T 2fk8_A 76 YAKVDLNLDKL----DLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHAR-----CEQVLASI--------- 136 (318)
T ss_dssp HHHHHHHHTTS----CCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHH-----HHHHHHTS---------
T ss_pred HHHHHHHHHhc----CCCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHH-----HHHHHHhc---------
Confidence 34445555442 2346789999999999999887765 77 89999999999844 33333211
Q ss_pred CCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchh
Q 024311 96 SSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRA 175 (269)
Q Consensus 96 ~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~ 175 (269)
....++++..+|..+
T Consensus 137 --------~~~~~v~~~~~d~~~--------------------------------------------------------- 151 (318)
T 2fk8_A 137 --------DTNRSRQVLLQGWED--------------------------------------------------------- 151 (318)
T ss_dssp --------CCSSCEEEEESCGGG---------------------------------------------------------
T ss_pred --------CCCCceEEEECChHH---------------------------------------------------------
Confidence 012345554443221
Q ss_pred hhhhcccccCCCCccEEEEecccccc--CCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 176 WERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 176 W~~~~~~~~~~~~fDlIlasD~iY~~--~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
.+++||+|++.+++++. .....+++.+.++|+ |+|++++..
T Consensus 152 ---------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~ 194 (318)
T 2fk8_A 152 ---------FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMP-ADGRMTVQS 194 (318)
T ss_dssp ---------CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSC-TTCEEEEEE
T ss_pred ---------CCCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 12589999999999887 688999999999999 899988864
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.5e-11 Score=98.94 Aligned_cols=104 Identities=23% Similarity=0.348 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.++.+|||+|||+|..++.++..+. +|+++|+++.+++. .+.|...+. . +++++..
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~~~~~-----------------~-~~~~~~~ 86 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIAN-----VERIKSIEN-----------------L-DNLHTRV 86 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHHHHHT-----------------C-TTEEEEE
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHH-----HHHHHHhCC-----------------C-CCcEEEE
Confidence 3677999999999999988888876 89999999999843 344443220 0 2355554
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|....+ . .++||+|+
T Consensus 87 ~d~~~~~---------------------------------------------------------------~-~~~~D~v~ 102 (199)
T 2xvm_A 87 VDLNNLT---------------------------------------------------------------F-DRQYDFIL 102 (199)
T ss_dssp CCGGGCC---------------------------------------------------------------C-CCCEEEEE
T ss_pred cchhhCC---------------------------------------------------------------C-CCCceEEE
Confidence 4433210 1 45899999
Q ss_pred EeccccccC--CHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 194 LTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 194 asD~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
++.++++.. ....+++.+.++|+ |+|++++..
T Consensus 103 ~~~~l~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~ 136 (199)
T 2xvm_A 103 STVVLMFLEAKTIPGLIANMQRCTK-PGGYNLIVA 136 (199)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred EcchhhhCCHHHHHHHHHHHHHhcC-CCeEEEEEE
Confidence 999999776 78899999999999 899877653
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.8e-11 Score=104.72 Aligned_cols=138 Identities=20% Similarity=0.222 Sum_probs=95.1
Q ss_pred eccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhcc
Q 024311 13 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR 92 (269)
Q Consensus 13 W~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~ 92 (269)
.+......++|... ...+.+|||+|||+|..++.++..|+ +|+++|+++.++ ...+.|...+.
T Consensus 104 ~~tt~~~~~~l~~~------~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v-----~~a~~n~~~~~----- 166 (254)
T 2nxc_A 104 HETTRLALKALARH------LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVL-----PQAEANAKRNG----- 166 (254)
T ss_dssp SHHHHHHHHHHHHH------CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGH-----HHHHHHHHHTT-----
T ss_pred CHHHHHHHHHHHHh------cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHH-----HHHHHHHHHcC-----
Confidence 44555566666554 23578999999999999999999998 999999999988 44555654431
Q ss_pred CCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 024311 93 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG 172 (269)
Q Consensus 93 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~g 172 (269)
.. +++..+|+...
T Consensus 167 ------------~~--v~~~~~d~~~~----------------------------------------------------- 179 (254)
T 2nxc_A 167 ------------VR--PRFLEGSLEAA----------------------------------------------------- 179 (254)
T ss_dssp ------------CC--CEEEESCHHHH-----------------------------------------------------
T ss_pred ------------Cc--EEEEECChhhc-----------------------------------------------------
Confidence 11 34433332210
Q ss_pred chhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeE
Q 024311 173 SRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGA 252 (269)
Q Consensus 173 s~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~ 252 (269)
....+||+|+++ .+++ ....++..+.++|+ |+|+++++.-.. .....+.+.+++.||-..
T Consensus 180 -----------~~~~~fD~Vv~n-~~~~--~~~~~l~~~~~~Lk-pgG~lils~~~~-----~~~~~v~~~l~~~Gf~~~ 239 (254)
T 2nxc_A 180 -----------LPFGPFDLLVAN-LYAE--LHAALAPRYREALV-PGGRALLTGILK-----DRAPLVREAMAGAGFRPL 239 (254)
T ss_dssp -----------GGGCCEEEEEEE-CCHH--HHHHHHHHHHHHEE-EEEEEEEEEEEG-----GGHHHHHHHHHHTTCEEE
T ss_pred -----------CcCCCCCEEEEC-CcHH--HHHHHHHHHHHHcC-CCCEEEEEeecc-----CCHHHHHHHHHHCCCEEE
Confidence 013489999985 3332 36778888999998 899998875332 257889999999998544
Q ss_pred EE
Q 024311 253 HL 254 (269)
Q Consensus 253 ~~ 254 (269)
++
T Consensus 240 ~~ 241 (254)
T 2nxc_A 240 EE 241 (254)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-10 Score=95.51 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
...++..+... ..-.+.+|||+|||+|..++.++..+ .+|++.|+++++++.
T Consensus 8 ~~~~~~~~l~~-----~~~~~~~vLDiGcG~G~~~~~la~~~-~~v~~vD~s~~~l~~ 59 (185)
T 3mti_A 8 PIHMSHDFLAE-----VLDDESIVVDATMGNGNDTAFLAGLS-KKVYAFDVQEQALGK 59 (185)
T ss_dssp HHHHHHHHHHT-----TCCTTCEEEESCCTTSHHHHHHHTTS-SEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHH-----hCCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEECCHHHHHH
Confidence 34455554443 23368899999999999999988885 499999999999844
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-10 Score=108.66 Aligned_cols=127 Identities=21% Similarity=0.265 Sum_probs=90.8
Q ss_pred eeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhc
Q 024311 12 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS 91 (269)
Q Consensus 12 vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~ 91 (269)
+-+.+..|.+++..... ....++.+|||||||+|..++.++..++ +|+++|+++.+++ ..+.|+..+.
T Consensus 212 ~d~~t~~ll~~l~~~l~--~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~-----~A~~n~~~~~---- 279 (381)
T 3dmg_A 212 VDPASLLLLEALQERLG--PEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVL-----SLQKGLEANA---- 279 (381)
T ss_dssp CCHHHHHHHHHHHHHHC--TTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHH-----HHHHHHHHTT----
T ss_pred CCHHHHHHHHHHHHhhc--ccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHH-----HHHHHHHHcC----
Confidence 34566777777766431 1234788999999999999999998887 9999999999984 4455554331
Q ss_pred cCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 024311 92 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS 171 (269)
Q Consensus 92 ~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (269)
.+++++.+|.....
T Consensus 280 ---------------~~v~~~~~D~~~~~--------------------------------------------------- 293 (381)
T 3dmg_A 280 ---------------LKAQALHSDVDEAL--------------------------------------------------- 293 (381)
T ss_dssp ---------------CCCEEEECSTTTTS---------------------------------------------------
T ss_pred ---------------CCeEEEEcchhhcc---------------------------------------------------
Confidence 12455555544321
Q ss_pred CchhhhhhcccccCCCCccEEEEeccccc-----cCCHHHHHHHHHHhcCCCCeEEEEEEccc
Q 024311 172 GSRAWERASEADQGEGGYDVILLTEIPYS-----VTSLKKLYLLIKKCLRPPYGVVYLATKKN 229 (269)
Q Consensus 172 gs~~W~~~~~~~~~~~~fDlIlasD~iY~-----~~~~~~L~~~l~~~L~~p~g~~~va~k~~ 229 (269)
...++||+|++...++. ......+++.+.++|+ |+|+++|.+.++
T Consensus 294 ------------~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~Lk-pGG~l~iv~n~~ 343 (381)
T 3dmg_A 294 ------------TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLR-PGGVFFLVSNPF 343 (381)
T ss_dssp ------------CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEE-EEEEEEEEECTT
T ss_pred ------------ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcC-cCcEEEEEEcCC
Confidence 12368999998766665 4556788999999999 899999987664
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-10 Score=104.27 Aligned_cols=110 Identities=19% Similarity=0.189 Sum_probs=80.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHH--cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~--~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
++.+|||+|||+|..++.++. .+..+|+++|+++.+++. .+.|..... ...++++|.
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~~----------------~~~~~v~~~ 94 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKT-----AEVIKEGSP----------------DTYKNVSFK 94 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHH-----HHHHHHHCC-----------------CCTTEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHH-----HHHHHHhcc----------------CCCCceEEE
Confidence 688999999999999988774 345699999999999844 334432210 012467888
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.+. . . ......++||+|
T Consensus 95 ~~d~~~~~~-~----~----------------------------------------------------~~~~~~~~fD~V 117 (299)
T 3g5t_A 95 ISSSDDFKF-L----G----------------------------------------------------ADSVDKQKIDMI 117 (299)
T ss_dssp ECCTTCCGG-G----C----------------------------------------------------TTTTTSSCEEEE
T ss_pred EcCHHhCCc-c----c----------------------------------------------------cccccCCCeeEE
Confidence 888766431 0 0 000123689999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYL 224 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~v 224 (269)
+++.++++. ....+++.+.++|+ |+|.+++
T Consensus 118 ~~~~~l~~~-~~~~~l~~~~~~Lk-pgG~l~i 147 (299)
T 3g5t_A 118 TAVECAHWF-DFEKFQRSAYANLR-KDGTIAI 147 (299)
T ss_dssp EEESCGGGS-CHHHHHHHHHHHEE-EEEEEEE
T ss_pred eHhhHHHHh-CHHHHHHHHHHhcC-CCcEEEE
Confidence 999999999 99999999999999 8998877
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-11 Score=107.28 Aligned_cols=42 Identities=10% Similarity=0.272 Sum_probs=36.6
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~ 74 (269)
..+|++|||||||+|+..+.++..|+.+|+++|+++.+++.+
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a 94 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREEL 94 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHH
Confidence 457899999999999888888888887899999999999653
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-10 Score=97.43 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=85.6
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
..+.+|||+|||+|..++.++..+. +|++.|+++++++. .+.|+..+. ...++++..
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~~~-~v~~vD~s~~~~~~-----a~~~~~~~g-----------------~~~~v~~~~ 110 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLAGG-RAITIEPRADRIEN-----IQKNIDTYG-----------------LSPRMRAVQ 110 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHHHHTT-----------------CTTTEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCC-EEEEEeCCHHHHHH-----HHHHHHHcC-----------------CCCCEEEEe
Confidence 3678999999999999999888854 89999999999844 344543320 112566665
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+.. .....||+|+
T Consensus 111 ~d~~~~~---------------------------------------------------------------~~~~~~D~v~ 127 (204)
T 3njr_A 111 GTAPAAL---------------------------------------------------------------ADLPLPEAVF 127 (204)
T ss_dssp SCTTGGG---------------------------------------------------------------TTSCCCSEEE
T ss_pred Cchhhhc---------------------------------------------------------------ccCCCCCEEE
Confidence 5543310 0224799999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCc
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI 249 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~ 249 (269)
....+ ..+ +++.+.++|+ |+|++++..... +...++.+.+++.|+
T Consensus 128 ~~~~~----~~~-~l~~~~~~Lk-pgG~lv~~~~~~-----~~~~~~~~~l~~~g~ 172 (204)
T 3njr_A 128 IGGGG----SQA-LYDRLWEWLA-PGTRIVANAVTL-----ESETLLTQLHARHGG 172 (204)
T ss_dssp ECSCC----CHH-HHHHHHHHSC-TTCEEEEEECSH-----HHHHHHHHHHHHHCS
T ss_pred ECCcc----cHH-HHHHHHHhcC-CCcEEEEEecCc-----ccHHHHHHHHHhCCC
Confidence 75533 455 8999999998 899998876543 367889999999985
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.6e-11 Score=102.38 Aligned_cols=100 Identities=16% Similarity=0.156 Sum_probs=76.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
..+.+|||+|||+|..+..++.. +..+|+++|+++.+++.+ +.+. +++++.
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a-----~~~~-----------------------~~~~~~ 83 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKA-----ADRL-----------------------PNTNFG 83 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHH-----HHHS-----------------------TTSEEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHH-----HHhC-----------------------CCcEEE
Confidence 36789999999999999877765 234899999999988432 2221 234555
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|....+ ...+||+|
T Consensus 84 ~~d~~~~~----------------------------------------------------------------~~~~fD~v 99 (259)
T 2p35_A 84 KADLATWK----------------------------------------------------------------PAQKADLL 99 (259)
T ss_dssp ECCTTTCC----------------------------------------------------------------CSSCEEEE
T ss_pred ECChhhcC----------------------------------------------------------------ccCCcCEE
Confidence 45543211 23589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+++.++++......+++.+.++|+ |+|++++..
T Consensus 100 ~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~~ 132 (259)
T 2p35_A 100 YANAVFQWVPDHLAVLSQLMDQLE-SGGVLAVQM 132 (259)
T ss_dssp EEESCGGGSTTHHHHHHHHGGGEE-EEEEEEEEE
T ss_pred EEeCchhhCCCHHHHHHHHHHhcC-CCeEEEEEe
Confidence 999999999999999999999999 899998875
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.24 E-value=4.8e-11 Score=103.76 Aligned_cols=103 Identities=16% Similarity=0.163 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
-++.+|||+|||+|..++.++..+. +|+++|.++.+++. .+.+. .. ..+++++..
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~-~~------------------~~~~~~~~~ 92 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEV-----FRQKI-AG------------------VDRKVQVVQ 92 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHH-----HHHHT-TT------------------SCTTEEEEE
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHH-----HHHHh-hc------------------cCCceEEEE
Confidence 3678999999999999988887776 89999999998843 23332 00 123566766
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|+...+ ...++||+|+
T Consensus 93 ~d~~~~~---------------------------------------------------------------~~~~~fD~v~ 109 (263)
T 2yqz_A 93 ADARAIP---------------------------------------------------------------LPDESVHGVI 109 (263)
T ss_dssp SCTTSCC---------------------------------------------------------------SCTTCEEEEE
T ss_pred cccccCC---------------------------------------------------------------CCCCCeeEEE
Confidence 6654321 1345899999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
++.++++....+.+++.+.++|+ |+|.+++.
T Consensus 110 ~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~~~ 140 (263)
T 2yqz_A 110 VVHLWHLVPDWPKVLAEAIRVLK-PGGALLEG 140 (263)
T ss_dssp EESCGGGCTTHHHHHHHHHHHEE-EEEEEEEE
T ss_pred ECCchhhcCCHHHHHHHHHHHCC-CCcEEEEE
Confidence 99999999999999999999999 89988876
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-10 Score=102.30 Aligned_cols=98 Identities=22% Similarity=0.244 Sum_probs=75.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+.+|||+|||+|.....++..+. +|+++|.++.+++.+ +.+. +++.+..+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a-----~~~~-----------------------~~~~~~~~ 107 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKA-----RQNY-----------------------PHLHFDVA 107 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHH-----HHHC-----------------------TTSCEEEC
T ss_pred CCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHH-----HhhC-----------------------CCCEEEEC
Confidence 678999999999999988887665 899999999988432 2111 12344444
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|....+ ..++||+|++
T Consensus 108 d~~~~~----------------------------------------------------------------~~~~fD~v~~ 123 (279)
T 3ccf_A 108 DARNFR----------------------------------------------------------------VDKPLDAVFS 123 (279)
T ss_dssp CTTTCC----------------------------------------------------------------CSSCEEEEEE
T ss_pred ChhhCC----------------------------------------------------------------cCCCcCEEEE
Confidence 433211 1358999999
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+.++++....+.+++.+.++|+ |+|++++..
T Consensus 124 ~~~l~~~~d~~~~l~~~~~~Lk-pgG~l~~~~ 154 (279)
T 3ccf_A 124 NAMLHWVKEPEAAIASIHQALK-SGGRFVAEF 154 (279)
T ss_dssp ESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred cchhhhCcCHHHHHHHHHHhcC-CCcEEEEEe
Confidence 9999998899999999999999 899988864
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.5e-11 Score=97.82 Aligned_cols=127 Identities=21% Similarity=0.269 Sum_probs=84.5
Q ss_pred eccHHHHHHHHhhhhhcCCCCC-CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhc
Q 024311 13 WESSIDLVNVLKHEIRDGQLSF-RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS 91 (269)
Q Consensus 13 W~as~~La~~L~~~~~~~~~~~-~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~ 91 (269)
.+....+.+.+..... ..+ ++++|||+|||+|..++.++..++ +|++.|+++.+++ ..+.|+..+.
T Consensus 21 ~~~~~~~~~~~~~~~~---~~~~~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~-----~a~~~~~~~~---- 87 (171)
T 1ws6_A 21 RPSPVRLRKALFDYLR---LRYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVR-----LLKENVRRTG---- 87 (171)
T ss_dssp CCCCHHHHHHHHHHHH---HHCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHH-----HHHHHHHHHT----
T ss_pred CCCHHHHHHHHHHHHH---hhccCCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHH-----HHHHHHHHcC----
Confidence 4455555655554432 112 678999999999999999998888 4999999999984 4455554331
Q ss_pred cCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 024311 92 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS 171 (269)
Q Consensus 92 ~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (269)
. +++++.+|+.+....
T Consensus 88 -------------~--~~~~~~~d~~~~~~~------------------------------------------------- 103 (171)
T 1ws6_A 88 -------------L--GARVVALPVEVFLPE------------------------------------------------- 103 (171)
T ss_dssp -------------C--CCEEECSCHHHHHHH-------------------------------------------------
T ss_pred -------------C--ceEEEeccHHHHHHh-------------------------------------------------
Confidence 1 455555554431000
Q ss_pred CchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHH--HhcCCCCeEEEEEEccc
Q 024311 172 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIK--KCLRPPYGVVYLATKKN 229 (269)
Q Consensus 172 gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~--~~L~~p~g~~~va~k~~ 229 (269)
+ .....+||+|++.. .|. ...+.+++.+. ++|+ |+|++++.+...
T Consensus 104 ----~------~~~~~~~D~i~~~~-~~~-~~~~~~~~~~~~~~~L~-~gG~~~~~~~~~ 150 (171)
T 1ws6_A 104 ----A------KAQGERFTVAFMAP-PYA-MDLAALFGELLASGLVE-AGGLYVLQHPKD 150 (171)
T ss_dssp ----H------HHTTCCEEEEEECC-CTT-SCTTHHHHHHHHHTCEE-EEEEEEEEEETT
T ss_pred ----h------hccCCceEEEEECC-CCc-hhHHHHHHHHHhhcccC-CCcEEEEEeCCc
Confidence 0 01234899999854 455 66777888887 8888 899999887653
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-10 Score=98.96 Aligned_cols=132 Identities=17% Similarity=0.124 Sum_probs=85.0
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
..+.+|||+|||+|..++.++.. | ..+|++.|+++.+++ .+..|...+ .++.+
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~-----~~~~~a~~~--------------------~~v~~ 130 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGR-----DLINLAKKR--------------------TNIIP 130 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHH-----HHHHHHHHC--------------------TTEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHH-----HHHHHhhcc--------------------CCeEE
Confidence 35789999999999999887765 3 358999999998873 333333221 24566
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|..+...++ ....+||+
T Consensus 131 ~~~d~~~~~~~~------------------------------------------------------------~~~~~~D~ 150 (233)
T 2ipx_A 131 VIEDARHPHKYR------------------------------------------------------------MLIAMVDV 150 (233)
T ss_dssp ECSCTTCGGGGG------------------------------------------------------------GGCCCEEE
T ss_pred EEcccCChhhhc------------------------------------------------------------ccCCcEEE
Confidence 666654321000 12358999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHH-H---HHHhhhcCceeEE
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARH-L---RSLVDEEGIFGAH 253 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~-F---~~~~~~~g~~~~~ 253 (269)
|++ |.. .+.....++..+.++|+ |+|++++..+............ | ++.+++.||-..+
T Consensus 151 V~~-~~~-~~~~~~~~~~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~ 213 (233)
T 2ipx_A 151 IFA-DVA-QPDQTRIVALNAHTFLR-NGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQE 213 (233)
T ss_dssp EEE-CCC-CTTHHHHHHHHHHHHEE-EEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEE
T ss_pred EEE-cCC-CccHHHHHHHHHHHHcC-CCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEE
Confidence 997 555 45555667888889999 8999999866532111111111 2 6788889974444
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.6e-11 Score=106.80 Aligned_cols=111 Identities=19% Similarity=0.296 Sum_probs=78.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+.+|||||||+|..++.++..|+ +|+++|+++.+++.+ +.|........ ...++.+..+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a-----~~~~~~~~~~~--------------~~~~~~~~~~ 116 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYA-----LKERWNRRKEP--------------AFDKWVIEEA 116 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHH-----HHHHHHTTTSH--------------HHHTCEEEEC
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHH-----HHhhhhccccc--------------ccceeeEeec
Confidence 578999999999999999888888 999999999998543 33332110000 0012334344
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|+...+. +| ...++||+|++
T Consensus 117 d~~~~~~-----------------------------------------------------~~-------~~~~~fD~V~~ 136 (293)
T 3thr_A 117 NWLTLDK-----------------------------------------------------DV-------PAGDGFDAVIC 136 (293)
T ss_dssp CGGGHHH-----------------------------------------------------HS-------CCTTCEEEEEE
T ss_pred ChhhCcc-----------------------------------------------------cc-------ccCCCeEEEEE
Confidence 4333210 00 13468999999
Q ss_pred e-ccccccCC-------HHHHHHHHHHhcCCCCeEEEEEE
Q 024311 195 T-EIPYSVTS-------LKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 195 s-D~iY~~~~-------~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
. +++++... ...+++.+.++|+ |+|++++..
T Consensus 137 ~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~ 175 (293)
T 3thr_A 137 LGNSFAHLPDSKGDQSEHRLALKNIASMVR-PGGLLVIDH 175 (293)
T ss_dssp CTTCGGGSCCSSSSSHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred cChHHhhcCccccCHHHHHHHHHHHHHHcC-CCeEEEEEe
Confidence 8 99988888 8999999999999 899998764
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.23 E-value=6.4e-11 Score=100.72 Aligned_cols=51 Identities=24% Similarity=0.185 Sum_probs=40.8
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~ 74 (269)
.|.+|+.... .-++.+|||+|||+|...+.++..|. +|++.|+++.+++.+
T Consensus 10 ~l~~~~~~l~-----~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a 60 (203)
T 1pjz_A 10 DLQQYWSSLN-----VVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERY 60 (203)
T ss_dssp HHHHHHHHHC-----CCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHH
T ss_pred HHHHHHHhcc-----cCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence 4666665431 23678999999999999998888887 899999999999543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.1e-11 Score=105.53 Aligned_cols=135 Identities=16% Similarity=0.113 Sum_probs=93.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHH--HcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFAC--LKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa--~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
..+.+|||+|||+|..++.++ .....+|+++|+++.+++. .+.|.... ....++++
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~-----a~~~~~~~-----------------~~~~~v~~ 174 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDG-----ATRLAAGH-----------------ALAGQITL 174 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHH-----HHHHHTTS-----------------TTGGGEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHH-----HHHHHHhc-----------------CCCCceEE
Confidence 367899999999999888764 3444599999999999843 44444211 01234666
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
+.+|..+.+ .. ++||+
T Consensus 175 ~~~d~~~~~---------------------------------------------------------------~~-~~fD~ 190 (305)
T 3ocj_A 175 HRQDAWKLD---------------------------------------------------------------TR-EGYDL 190 (305)
T ss_dssp EECCGGGCC---------------------------------------------------------------CC-SCEEE
T ss_pred EECchhcCC---------------------------------------------------------------cc-CCeEE
Confidence 666644321 12 68999
Q ss_pred EEEeccccccCCHHH---HHHHHHHhcCCCCeEEEEEEccc-------c-c---c----------------------cCc
Q 024311 192 ILLTEIPYSVTSLKK---LYLLIKKCLRPPYGVVYLATKKN-------Y-V---G----------------------FNN 235 (269)
Q Consensus 192 IlasD~iY~~~~~~~---L~~~l~~~L~~p~g~~~va~k~~-------~-f---g----------------------~~~ 235 (269)
|++..++++...... +++.+.++|+ |+|++++..-.. + + + .-.
T Consensus 191 v~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (305)
T 3ocj_A 191 LTSNGLNIYEPDDARVTELYRRFWQALK-PGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALR 269 (305)
T ss_dssp EECCSSGGGCCCHHHHHHHHHHHHHHEE-EEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCC
T ss_pred EEECChhhhcCCHHHHHHHHHHHHHhcC-CCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccC
Confidence 999999987666655 7899999999 899999875211 1 0 0 002
Q ss_pred chHHHHHHhhhcCceeEEEE
Q 024311 236 AARHLRSLVDEEGIFGAHLI 255 (269)
Q Consensus 236 ~~~~F~~~~~~~g~~~~~~~ 255 (269)
+..++.+.+++.||-..++.
T Consensus 270 ~~~~~~~~l~~aGF~~v~~~ 289 (305)
T 3ocj_A 270 THAQTRAQLEEAGFTDLRFE 289 (305)
T ss_dssp CHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEE
Confidence 57788999999998655553
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-10 Score=99.41 Aligned_cols=127 Identities=13% Similarity=0.138 Sum_probs=89.0
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
-.+++|||+|||+|..+..++..++ +|+++|+++.+++.+ +.+ +++..
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a-----~~~--------------------------~~~~~ 87 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFC-----EGK--------------------------FNVVK 87 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHH-----HTT--------------------------SEEEC
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHH-----Hhh--------------------------cceee
Confidence 3678999999999999988888877 799999999887432 111 22222
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+.. .....++||+|+
T Consensus 88 ~d~~~~~-------------------------------------------------------------~~~~~~~fD~i~ 106 (240)
T 3dli_A 88 SDAIEYL-------------------------------------------------------------KSLPDKYLDGVM 106 (240)
T ss_dssp SCHHHHH-------------------------------------------------------------HTSCTTCBSEEE
T ss_pred ccHHHHh-------------------------------------------------------------hhcCCCCeeEEE
Confidence 2211100 002346899999
Q ss_pred EeccccccC--CHHHHHHHHHHhcCCCCeEEEEEEcccc---------cc----cCcchHHHHHHhhhcCceeEEE
Q 024311 194 LTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKNY---------VG----FNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 194 asD~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~k~~~---------fg----~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
+..++++.. ....+++.+.++|+ |+|++++...... .. ..-....+...+++.||-..++
T Consensus 107 ~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~ 181 (240)
T 3dli_A 107 ISHFVEHLDPERLFELLSLCYSKMK-YSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKI 181 (240)
T ss_dssp EESCGGGSCGGGHHHHHHHHHHHBC-TTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred ECCchhhCCcHHHHHHHHHHHHHcC-CCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCeEEEE
Confidence 999999988 66999999999999 8999888753211 00 0113577888999999854444
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.9e-11 Score=104.47 Aligned_cols=102 Identities=19% Similarity=0.211 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||+|||+|..++.++..|. +|+++|+++.+++. .+.|...+. .++++..+
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~-----a~~~~~~~~-------------------~~~~~~~~ 174 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAF-----LNETKEKEN-------------------LNISTALY 174 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHHHHTT-------------------CCEEEEEC
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHH-----HHHHHHHcC-------------------CceEEEEe
Confidence 688999999999999999998887 89999999999843 444443220 14555555
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|....+ ..++||+|++
T Consensus 175 d~~~~~----------------------------------------------------------------~~~~fD~i~~ 190 (286)
T 3m70_A 175 DINAAN----------------------------------------------------------------IQENYDFIVS 190 (286)
T ss_dssp CGGGCC----------------------------------------------------------------CCSCEEEEEE
T ss_pred cccccc----------------------------------------------------------------ccCCccEEEE
Confidence 433211 2458999999
Q ss_pred ecccccc--CCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 195 TEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 195 sD~iY~~--~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+.++++. ...+.+++.+.++|+ |+|++++.+
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~ 223 (286)
T 3m70_A 191 TVVFMFLNRERVPSIIKNMKEHTN-VGGYNLIVA 223 (286)
T ss_dssp CSSGGGSCGGGHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred ccchhhCCHHHHHHHHHHHHHhcC-CCcEEEEEE
Confidence 9999855 567799999999998 899977654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.22 E-value=5.9e-10 Score=94.92 Aligned_cols=130 Identities=13% Similarity=0.047 Sum_probs=88.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||||||+|..++.++... ..+|+++|+++.+++. .+.|+..+. + .+++++.
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~-----a~~~~~~~~-----------------~-~~v~~~~ 97 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSY-----ALDKVLEVG-----------------V-PNIKLLW 97 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHH-----HHHHHHHHC-----------------C-SSEEEEE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHH-----HHHHHHHcC-----------------C-CCEEEEe
Confidence 47799999999999998877764 3489999999999843 444543320 1 3677777
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|+...+.. ...++||+|+
T Consensus 98 ~d~~~~~~~-------------------------------------------------------------~~~~~~D~i~ 116 (214)
T 1yzh_A 98 VDGSDLTDY-------------------------------------------------------------FEDGEIDRLY 116 (214)
T ss_dssp CCSSCGGGT-------------------------------------------------------------SCTTCCSEEE
T ss_pred CCHHHHHhh-------------------------------------------------------------cCCCCCCEEE
Confidence 776653210 1235799999
Q ss_pred EeccccccC--------CHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEE
Q 024311 194 LTEIPYSVT--------SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 194 asD~iY~~~--------~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
+.-..-++. ..+.+++.+.++|+ |+|++++.+.... -.....+.+++.|+....+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~-----~~~~~~~~~~~~g~~~~~~ 179 (214)
T 1yzh_A 117 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILP-ENGEIHFKTDNRG-----LFEYSLVSFSQYGMKLNGV 179 (214)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHSC-TTCEEEEEESCHH-----HHHHHHHHHHHHTCEEEEE
T ss_pred EECCCCccccchhhhccCCHHHHHHHHHHcC-CCcEEEEEeCCHH-----HHHHHHHHHHHCCCeeeec
Confidence 863322111 34689999999998 8999999874321 1345667788888754444
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.22 E-value=4e-10 Score=93.17 Aligned_cols=51 Identities=25% Similarity=0.302 Sum_probs=40.5
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
+.+..|++++... ..++.+|||+|||+|..++.++..+ +|+++|+++.+++
T Consensus 8 ~~~~~l~~~l~~~------~~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~ 58 (170)
T 3q87_B 8 EDTYTLMDALERE------GLEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALE 58 (170)
T ss_dssp HHHHHHHHHHHHH------TCCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHH
T ss_pred ccHHHHHHHHHhh------cCCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHh
Confidence 3455666665442 2357799999999999999999887 9999999999883
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.7e-10 Score=98.52 Aligned_cols=145 Identities=12% Similarity=0.144 Sum_probs=96.6
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhcc
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR 92 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~ 92 (269)
+.+..+++++.+... .++.+|||+|||+|..++.++. .+..+|+++|+++.+++ ..+.|...+.
T Consensus 93 ~~te~l~~~~l~~~~-----~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~-----~a~~n~~~~~----- 157 (276)
T 2b3t_A 93 PDTECLVEQALARLP-----EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVS-----LAQRNAQHLA----- 157 (276)
T ss_dssp TTHHHHHHHHHHHSC-----SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHH-----HHHHHHHHHT-----
T ss_pred chHHHHHHHHHHhcc-----cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHH-----HHHHHHHHcC-----
Confidence 456677777766531 3567999999999999988775 34459999999999984 3455554321
Q ss_pred CCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 024311 93 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG 172 (269)
Q Consensus 93 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~g 172 (269)
. +++++..+|+...
T Consensus 158 ------------~-~~v~~~~~d~~~~----------------------------------------------------- 171 (276)
T 2b3t_A 158 ------------I-KNIHILQSDWFSA----------------------------------------------------- 171 (276)
T ss_dssp ------------C-CSEEEECCSTTGG-----------------------------------------------------
T ss_pred ------------C-CceEEEEcchhhh-----------------------------------------------------
Confidence 1 2467766665431
Q ss_pred chhhhhhcccccCCCCccEEEEe-------------cccc-cc-----------CCHHHHHHHHHHhcCCCCeEEEEEEc
Q 024311 173 SRAWERASEADQGEGGYDVILLT-------------EIPY-SV-----------TSLKKLYLLIKKCLRPPYGVVYLATK 227 (269)
Q Consensus 173 s~~W~~~~~~~~~~~~fDlIlas-------------D~iY-~~-----------~~~~~L~~~l~~~L~~p~g~~~va~k 227 (269)
...++||+|++. ++++ .| ..+..+++.+.++|+ |+|++++...
T Consensus 172 -----------~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lk-pgG~l~~~~~ 239 (276)
T 2b3t_A 172 -----------LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV-SGGFLLLEHG 239 (276)
T ss_dssp -----------GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE-EEEEEEEECC
T ss_pred -----------cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcC-CCCEEEEEEC
Confidence 013479999985 2222 11 234677888888998 8999888643
Q ss_pred ccccccCcchHHHHHHhhhcCceeEEEEee
Q 024311 228 KNYVGFNNAARHLRSLVDEEGIFGAHLIKE 257 (269)
Q Consensus 228 ~~~fg~~~~~~~F~~~~~~~g~~~~~~~~~ 257 (269)
. ....++.+.+++.||...++..+
T Consensus 240 ~------~~~~~~~~~l~~~Gf~~v~~~~d 263 (276)
T 2b3t_A 240 W------QQGEAVRQAFILAGYHDVETCRD 263 (276)
T ss_dssp S------SCHHHHHHHHHHTTCTTCCEEEC
T ss_pred c------hHHHHHHHHHHHCCCcEEEEEec
Confidence 2 23567888888899754554433
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.21 E-value=8.3e-11 Score=98.93 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCCCHHHH-HHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGI-FACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl-~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||+|||+|...+ .++..+. +|++.|.++.+++. .+.+...+ ..++++..
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~-----a~~~~~~~-------------------~~~~~~~~ 77 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKK-----AENFSREN-------------------NFKLNISK 77 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHH-----HHHHHHHH-------------------TCCCCEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHH-----HHHHHHhc-------------------CCceEEEE
Confidence 57899999999998753 4455565 89999999999854 33333221 01344444
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|....+ ...++||+|+
T Consensus 78 ~d~~~~~---------------------------------------------------------------~~~~~fD~v~ 94 (209)
T 2p8j_A 78 GDIRKLP---------------------------------------------------------------FKDESMSFVY 94 (209)
T ss_dssp CCTTSCC---------------------------------------------------------------SCTTCEEEEE
T ss_pred CchhhCC---------------------------------------------------------------CCCCceeEEE
Confidence 4443221 1345899999
Q ss_pred Eecccccc--CCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 194 LTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 194 asD~iY~~--~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+..++++. .....+++.+.++|+ |+|++++..
T Consensus 95 ~~~~l~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~ 128 (209)
T 2p8j_A 95 SYGTIFHMRKNDVKEAIDEIKRVLK-PGGLACINF 128 (209)
T ss_dssp ECSCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred EcChHHhCCHHHHHHHHHHHHHHcC-CCcEEEEEE
Confidence 99999887 677889999999999 899988864
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=8.9e-11 Score=108.07 Aligned_cols=104 Identities=26% Similarity=0.333 Sum_probs=76.0
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
..++++|||+|||+|..++.++..|+.+|++.|.++ +++. .+.|+..+. ...+++++
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~-----a~~~~~~~~-----------------~~~~i~~~ 118 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQ-----AMDIIRLNK-----------------LEDTITLI 118 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHH-----HHHHHHHTT-----------------CTTTEEEE
T ss_pred hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHH-----HHHHHHHcC-----------------CCCcEEEE
Confidence 457889999999999999999998888999999996 7743 344443321 22356666
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.+ ...++||+|
T Consensus 119 ~~d~~~~~---------------------------------------------------------------~~~~~~D~I 135 (340)
T 2fyt_A 119 KGKIEEVH---------------------------------------------------------------LPVEKVDVI 135 (340)
T ss_dssp ESCTTTSC---------------------------------------------------------------CSCSCEEEE
T ss_pred EeeHHHhc---------------------------------------------------------------CCCCcEEEE
Confidence 66544321 123589999
Q ss_pred EEec---cccccCCHHHHHHHHHHhcCCCCeEEE
Q 024311 193 LLTE---IPYSVTSLKKLYLLIKKCLRPPYGVVY 223 (269)
Q Consensus 193 lasD---~iY~~~~~~~L~~~l~~~L~~p~g~~~ 223 (269)
++.. .+.+....+.++..+.++|+ |+|+++
T Consensus 136 vs~~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~li 168 (340)
T 2fyt_A 136 ISEWMGYFLLFESMLDSVLYAKNKYLA-KGGSVY 168 (340)
T ss_dssp EECCCBTTBTTTCHHHHHHHHHHHHEE-EEEEEE
T ss_pred EEcCchhhccCHHHHHHHHHHHHhhcC-CCcEEE
Confidence 9876 35556677888999999999 889876
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.21 E-value=2e-10 Score=98.42 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
++.+|||+|||+|..+..++..++ +|+++|.++.+++.
T Consensus 40 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~ 77 (239)
T 3bxo_A 40 EASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTH 77 (239)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHH
T ss_pred CCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHH
Confidence 578999999999999988887776 89999999998844
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.9e-11 Score=101.71 Aligned_cols=116 Identities=17% Similarity=0.134 Sum_probs=83.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||+|||+|..++.++..++ +|+++|+++.+++.+ +.|. +++++..+
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a-----~~~~-----------------------~~~~~~~~ 98 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLA-----RANA-----------------------PHADVYEW 98 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHH-----HHHC-----------------------TTSEEEEC
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHH-----HHhC-----------------------CCceEEEc
Confidence 678999999999999999888876 899999999988442 2221 24566666
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccC-CCCccEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQG-EGGYDVIL 193 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~-~~~fDlIl 193 (269)
|+.+.. + .. .++||+|+
T Consensus 99 d~~~~~--------------------------------------------------~------------~~~~~~fD~v~ 116 (226)
T 3m33_A 99 NGKGEL--------------------------------------------------P------------AGLGAPFGLIV 116 (226)
T ss_dssp CSCSSC--------------------------------------------------C------------TTCCCCEEEEE
T ss_pred chhhcc--------------------------------------------------C------------CcCCCCEEEEE
Confidence 664210 0 12 46899999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEE
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
++ .....+++.+.++|+ |+|+++... .......+.+.+++.|+...++
T Consensus 117 ~~------~~~~~~l~~~~~~Lk-pgG~l~~~~------~~~~~~~~~~~l~~~Gf~~~~~ 164 (226)
T 3m33_A 117 SR------RGPTSVILRLPELAA-PDAHFLYVG------PRLNVPEVPERLAAVGWDIVAE 164 (226)
T ss_dssp EE------SCCSGGGGGHHHHEE-EEEEEEEEE------SSSCCTHHHHHHHHTTCEEEEE
T ss_pred eC------CCHHHHHHHHHHHcC-CCcEEEEeC------CcCCHHHHHHHHHHCCCeEEEE
Confidence 97 356677888889999 899888222 1235678899999999854443
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.2e-11 Score=109.72 Aligned_cols=109 Identities=23% Similarity=0.344 Sum_probs=79.1
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 32 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
...++++|||||||+|..++.++..|+++|+++|.+ .+++. .+.|+..+. ...++++
T Consensus 60 ~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~-----a~~~~~~~~-----------------~~~~v~~ 116 (376)
T 3r0q_C 60 HHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADH-----ARALVKANN-----------------LDHIVEV 116 (376)
T ss_dssp TTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHH-----HHHHHHHTT-----------------CTTTEEE
T ss_pred ccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHH-----HHHHHHHcC-----------------CCCeEEE
Confidence 356899999999999999999999998899999999 78743 344443321 2234666
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
+.+|..+.+ ..++||+
T Consensus 117 ~~~d~~~~~----------------------------------------------------------------~~~~~D~ 132 (376)
T 3r0q_C 117 IEGSVEDIS----------------------------------------------------------------LPEKVDV 132 (376)
T ss_dssp EESCGGGCC----------------------------------------------------------------CSSCEEE
T ss_pred EECchhhcC----------------------------------------------------------------cCCcceE
Confidence 666654321 2268999
Q ss_pred EEEecccccc---CCHHHHHHHHHHhcCCCCeEEEEEEcc
Q 024311 192 ILLTEIPYSV---TSLKKLYLLIKKCLRPPYGVVYLATKK 228 (269)
Q Consensus 192 IlasD~iY~~---~~~~~L~~~l~~~L~~p~g~~~va~k~ 228 (269)
|++.-+.|.. ...+.++..+.++|+ |+|++++....
T Consensus 133 Iv~~~~~~~l~~e~~~~~~l~~~~~~Lk-pgG~li~~~~~ 171 (376)
T 3r0q_C 133 IISEWMGYFLLRESMFDSVISARDRWLK-PTGVMYPSHAR 171 (376)
T ss_dssp EEECCCBTTBTTTCTHHHHHHHHHHHEE-EEEEEESSEEE
T ss_pred EEEcChhhcccchHHHHHHHHHHHhhCC-CCeEEEEecCe
Confidence 9984434443 668889999999999 89988765433
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-10 Score=100.56 Aligned_cols=128 Identities=13% Similarity=0.118 Sum_probs=86.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||+|||+|.+++.++.. ...+|++.|.++.+++. ++.|...+. + .+++++.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~~-----------------~-~~v~~~~ 126 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITF-----LEKLSEALQ-----------------L-ENTTFCH 126 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHH-----HHHHHHHHT-----------------C-SSEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHH-----HHHHHHHcC-----------------C-CCEEEEe
Confidence 6789999999999999887753 33589999999999844 344443320 1 2466666
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+.+. .....++||+|+
T Consensus 127 ~d~~~~~~------------------------------------------------------------~~~~~~~fD~V~ 146 (240)
T 1xdz_A 127 DRAETFGQ------------------------------------------------------------RKDVRESYDIVT 146 (240)
T ss_dssp SCHHHHTT------------------------------------------------------------CTTTTTCEEEEE
T ss_pred ccHHHhcc------------------------------------------------------------cccccCCccEEE
Confidence 65433210 000245899999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEE
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAH 253 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~ 253 (269)
+..+ ...+.+++.+.++|+ |+|++++...... .....++...+++.|+...+
T Consensus 147 ~~~~----~~~~~~l~~~~~~Lk-pgG~l~~~~g~~~---~~~~~~~~~~l~~~g~~~~~ 198 (240)
T 1xdz_A 147 ARAV----ARLSVLSELCLPLVK-KNGLFVALKAASA---EEELNAGKKAITTLGGELEN 198 (240)
T ss_dssp EECC----SCHHHHHHHHGGGEE-EEEEEEEEECC-C---HHHHHHHHHHHHHTTEEEEE
T ss_pred Eecc----CCHHHHHHHHHHhcC-CCCEEEEEeCCCc---hHHHHHHHHHHHHcCCeEeE
Confidence 8662 568899999999999 8999887633221 12456788888899974333
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.20 E-value=8.8e-10 Score=94.58 Aligned_cols=69 Identities=17% Similarity=0.098 Sum_probs=46.5
Q ss_pred CCCCCcc----CceeeccHH-HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHH
Q 024311 2 ISSKPDG----FLKCWESSI-DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIR 72 (269)
Q Consensus 2 ~~g~ye~----G~~vW~as~-~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~ 72 (269)
.+.+|.. ....|..-. .++..+..... ...-.|.+|||||||+|..+..++.. +..+|++.|+++.+++
T Consensus 21 ~~~~Y~~~~~~~y~~~~~~~~~l~~~~~~~l~--~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~ 95 (210)
T 1nt2_A 21 YGSHYGEKVFDGYREWVPWRSKLAAMILKGHR--LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFE 95 (210)
T ss_dssp CCCSSSCCEETTEEECCGGGCHHHHHHHTSCC--CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHH
T ss_pred CccccchhhhhhhhhcChhHHHHHHHHHhhcc--cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 4567777 788886532 23333333211 11236789999999999988776654 3358999999999874
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-10 Score=103.65 Aligned_cols=124 Identities=14% Similarity=0.168 Sum_probs=87.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.|.+|||+|||+|..++.++..++.+|++.|.++.+++. .+.|+..|. +..++++..+
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~-----a~~n~~~n~-----------------~~~~v~~~~~ 182 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKF-----LVENIHLNK-----------------VEDRMSAYNM 182 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHH-----HHHHHHHTT-----------------CTTTEEEECS
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHH-----HHHHHHHcC-----------------CCceEEEEEC
Confidence 488999999999999999999888689999999999844 455554431 1234666666
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|..+.. ...+||+|++
T Consensus 183 D~~~~~----------------------------------------------------------------~~~~fD~Vi~ 198 (278)
T 2frn_A 183 DNRDFP----------------------------------------------------------------GENIADRILM 198 (278)
T ss_dssp CTTTCC----------------------------------------------------------------CCSCEEEEEE
T ss_pred CHHHhc----------------------------------------------------------------ccCCccEEEE
Confidence 644321 1458999998
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEEccc-ccccCcchHHHHHHhhhcCc
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN-YVGFNNAARHLRSLVDEEGI 249 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~-~fg~~~~~~~F~~~~~~~g~ 249 (269)
|..+ ....++..+.++|+ |+|++++.+... ..........+.+.+++.|+
T Consensus 199 -~~p~---~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~ 249 (278)
T 2frn_A 199 -GYVV---RTHEFIPKALSIAK-DGAIIHYHNTVPEKLMPREPFETFKRITKEYGY 249 (278)
T ss_dssp -CCCS---SGGGGHHHHHHHEE-EEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTC
T ss_pred -CCch---hHHHHHHHHHHHCC-CCeEEEEEEeeccccccccHHHHHHHHHHHcCC
Confidence 4433 34567778888998 899988865432 11123456778888888896
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.1e-11 Score=101.32 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHH
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~ 73 (269)
+..+++++.+... ...++.+|||+|||+|..++.++..++ .+|+++|+++.+++.
T Consensus 14 ~~~~~~~~~~~l~---~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~ 69 (215)
T 4dzr_A 14 TEVLVEEAIRFLK---RMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAV 69 (215)
T ss_dssp HHHHHHHHHHHHT---TCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------
T ss_pred HHHHHHHHHHHhh---hcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence 4556666666542 124688999999999999998887753 389999999999844
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-10 Score=96.51 Aligned_cols=124 Identities=17% Similarity=0.146 Sum_probs=84.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+ +|||+|||+|..++.++..+. +|+++|+++.+++. .+.+.... ..++.+..+
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~-----a~~~~~~~-------------------~~~~~~~~~ 83 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAK-----AKQLAQEK-------------------GVKITTVQS 83 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHH-----HHHHHHHH-------------------TCCEEEECC
T ss_pred CC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHH-----HHHHHHhc-------------------CCceEEEEc
Confidence 45 999999999999988888877 89999999999844 33443221 013455544
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|....+ ...++||+|++
T Consensus 84 d~~~~~---------------------------------------------------------------~~~~~fD~v~~ 100 (202)
T 2kw5_A 84 NLADFD---------------------------------------------------------------IVADAWEGIVS 100 (202)
T ss_dssp BTTTBS---------------------------------------------------------------CCTTTCSEEEE
T ss_pred ChhhcC---------------------------------------------------------------CCcCCccEEEE
Confidence 433211 13458999999
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEEccc---cc--cc------CcchHHHHHHhhhcCce
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN---YV--GF------NNAARHLRSLVDEEGIF 250 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~---~f--g~------~~~~~~F~~~~~~~g~~ 250 (269)
+.+.+.......+++.+.++|+ |+|++++..... .+ +. .-+..++.+.++ ||-
T Consensus 101 ~~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~--Gf~ 164 (202)
T 2kw5_A 101 IFCHLPSSLRQQLYPKVYQGLK-PGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP--SLN 164 (202)
T ss_dssp ECCCCCHHHHHHHHHHHHTTCC-SSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS--SSC
T ss_pred EhhcCCHHHHHHHHHHHHHhcC-CCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc--Cce
Confidence 7665545667888999999998 899988874211 00 10 124577778777 863
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-10 Score=107.03 Aligned_cols=105 Identities=23% Similarity=0.300 Sum_probs=78.4
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
..++++|||+|||+|..++.++..|+.+|++.|.++ +++. .+.|...+. ...+++++
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~-----a~~~~~~~~-----------------~~~~v~~~ 120 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDY-----AVKIVKANK-----------------LDHVVTII 120 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHH-----HHHHHHHTT-----------------CTTTEEEE
T ss_pred cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHH-----HHHHHHHcC-----------------CCCcEEEE
Confidence 457899999999999999999999888999999995 7733 344443321 22357777
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|+.+.+ ...++||+|
T Consensus 121 ~~d~~~~~---------------------------------------------------------------~~~~~fD~I 137 (349)
T 3q7e_A 121 KGKVEEVE---------------------------------------------------------------LPVEKVDII 137 (349)
T ss_dssp ESCTTTCC---------------------------------------------------------------CSSSCEEEE
T ss_pred ECcHHHcc---------------------------------------------------------------CCCCceEEE
Confidence 77766531 124589999
Q ss_pred EEecc---ccccCCHHHHHHHHHHhcCCCCeEEEE
Q 024311 193 LLTEI---PYSVTSLKKLYLLIKKCLRPPYGVVYL 224 (269)
Q Consensus 193 lasD~---iY~~~~~~~L~~~l~~~L~~p~g~~~v 224 (269)
++.-+ +......+.++..+.++|+ |+|+++.
T Consensus 138 is~~~~~~l~~~~~~~~~l~~~~r~Lk-pgG~li~ 171 (349)
T 3q7e_A 138 ISEWMGYCLFYESMLNTVLHARDKWLA-PDGLIFP 171 (349)
T ss_dssp EECCCBBTBTBTCCHHHHHHHHHHHEE-EEEEEES
T ss_pred EEccccccccCchhHHHHHHHHHHhCC-CCCEEcc
Confidence 98554 4556889999999999998 8898754
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.1e-10 Score=101.45 Aligned_cols=106 Identities=19% Similarity=0.246 Sum_probs=73.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+.+|||||||+|..++.++..|. +|+++|+++.+++. .+.+...... .+..++++..+
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~-----a~~~~~~~~~---------------~~~~~v~~~~~ 140 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAA-----FRKRLAEAPA---------------DVRDRCTLVQG 140 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHH-----HHHHHHTSCH---------------HHHTTEEEEEC
T ss_pred CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHH-----HHHHHhhccc---------------ccccceEEEeC
Confidence 455999999999999998888876 89999999999854 3333321100 00024666666
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|....+ ..++||+|++
T Consensus 141 d~~~~~----------------------------------------------------------------~~~~fD~v~~ 156 (299)
T 3g2m_A 141 DMSAFA----------------------------------------------------------------LDKRFGTVVI 156 (299)
T ss_dssp BTTBCC----------------------------------------------------------------CSCCEEEEEE
T ss_pred chhcCC----------------------------------------------------------------cCCCcCEEEE
Confidence 654321 2458999986
Q ss_pred e-ccccccC--CHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 195 T-EIPYSVT--SLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 195 s-D~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+ .+++... ....+++.+.++|+ |+|++++..
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~l~~~~ 190 (299)
T 3g2m_A 157 SSGSINELDEADRRGLYASVREHLE-PGGKFLLSL 190 (299)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred CCcccccCCHHHHHHHHHHHHHHcC-CCcEEEEEe
Confidence 5 5555443 36788999999999 899988864
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.18 E-value=8.1e-10 Score=97.00 Aligned_cols=110 Identities=18% Similarity=0.246 Sum_probs=82.0
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCC
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPES 96 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~ 96 (269)
..+++.+.+... ...+.+|||+|||+|..++.++..++ +|+++|+++.+++.+.
T Consensus 20 ~~~~~~l~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~--------------------- 73 (261)
T 3ege_A 20 IRIVNAIINLLN----LPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAV--------------------- 73 (261)
T ss_dssp HHHHHHHHHHHC----CCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSC---------------------
T ss_pred HHHHHHHHHHhC----CCCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHH---------------------
Confidence 356677766542 23678999999999999998888765 8999999998873210
Q ss_pred CCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhh
Q 024311 97 SLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAW 176 (269)
Q Consensus 97 ~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W 176 (269)
...+++|..+|....+
T Consensus 74 --------~~~~~~~~~~d~~~~~-------------------------------------------------------- 89 (261)
T 3ege_A 74 --------VHPQVEWFTGYAENLA-------------------------------------------------------- 89 (261)
T ss_dssp --------CCTTEEEECCCTTSCC--------------------------------------------------------
T ss_pred --------hccCCEEEECchhhCC--------------------------------------------------------
Confidence 0125666666654421
Q ss_pred hhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 177 ERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 177 ~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
...++||+|++..++++....+.+++.+.++|+ +|.+++.
T Consensus 90 -------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk--gG~~~~~ 129 (261)
T 3ege_A 90 -------LPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR--DGTIVLL 129 (261)
T ss_dssp -------SCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC--SSCEEEE
T ss_pred -------CCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC--CcEEEEE
Confidence 134689999999999999999999999999998 6655444
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.6e-10 Score=96.58 Aligned_cols=128 Identities=16% Similarity=0.150 Sum_probs=89.6
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.++.+|||+|||+|..+..++..| .+|+++|+++.+++.+ +.+. .++..
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~-----~~~~-------------------------~~~~~ 79 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQA-----KEKL-------------------------DHVVL 79 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHH-----HTTS-------------------------SEEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHH-----HHhC-------------------------CcEEE
Confidence 367899999999999998888776 5999999999887432 1111 12222
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..... . ....++||+|+
T Consensus 80 ~d~~~~~-------------------------------------------------~------------~~~~~~fD~v~ 98 (230)
T 3cc8_A 80 GDIETMD-------------------------------------------------M------------PYEEEQFDCVI 98 (230)
T ss_dssp SCTTTCC-------------------------------------------------C------------CSCTTCEEEEE
T ss_pred cchhhcC-------------------------------------------------C------------CCCCCccCEEE
Confidence 3322210 0 01346899999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccc------------cc------------cCcchHHHHHHhhhcCc
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY------------VG------------FNNAARHLRSLVDEEGI 249 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~------------fg------------~~~~~~~F~~~~~~~g~ 249 (269)
+++++++......+++.+.++|+ |+|.+++...... +. ..-+..++.+.+++.||
T Consensus 99 ~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 177 (230)
T 3cc8_A 99 FGDVLEHLFDPWAVIEKVKPYIK-QNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGY 177 (230)
T ss_dssp EESCGGGSSCHHHHHHHTGGGEE-EEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTE
T ss_pred ECChhhhcCCHHHHHHHHHHHcC-CCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCC
Confidence 99999999999999999999998 8999988753210 00 01146788899999997
Q ss_pred eeEEE
Q 024311 250 FGAHL 254 (269)
Q Consensus 250 ~~~~~ 254 (269)
-..++
T Consensus 178 ~~~~~ 182 (230)
T 3cc8_A 178 SISKV 182 (230)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 44443
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.6e-10 Score=100.79 Aligned_cols=149 Identities=13% Similarity=0.197 Sum_probs=93.9
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhcc
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSR 92 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~ 92 (269)
--++.|+.++. ..++.+|||||||+|..++.++... ..+|++.|+++.+++. .+.|+..... +
T Consensus 23 ~D~~lL~~~~~--------~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~-----a~~n~~~~~~--~- 86 (260)
T 2ozv_A 23 MDAMLLASLVA--------DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEF-----ARRSLELPDN--A- 86 (260)
T ss_dssp CHHHHHHHTCC--------CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHH-----HHHHTTSGGG--T-
T ss_pred cHHHHHHHHhc--------ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHH-----HHHHHHhhhh--C-
Confidence 34556666542 2256799999999999999888765 3589999999999854 3444422000 0
Q ss_pred CCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccC
Q 024311 93 QPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSG 172 (269)
Q Consensus 93 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~g 172 (269)
.+..+++++.+|..+....
T Consensus 87 -----------~l~~~v~~~~~D~~~~~~~-------------------------------------------------- 105 (260)
T 2ozv_A 87 -----------AFSARIEVLEADVTLRAKA-------------------------------------------------- 105 (260)
T ss_dssp -----------TTGGGEEEEECCTTCCHHH--------------------------------------------------
T ss_pred -----------CCcceEEEEeCCHHHHhhh--------------------------------------------------
Confidence 0123567777776653100
Q ss_pred chhhhhhcccccCCCCccEEEEeccccccC-------------------CHHHHHHHHHHhcCCCCeEEEEEEccccccc
Q 024311 173 SRAWERASEADQGEGGYDVILLTEIPYSVT-------------------SLKKLYLLIKKCLRPPYGVVYLATKKNYVGF 233 (269)
Q Consensus 173 s~~W~~~~~~~~~~~~fDlIlasD~iY~~~-------------------~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~ 233 (269)
+. .......+||+|++. ..|... .++.+++.+.++|+ |+|++++.....
T Consensus 106 ---~~---~~~~~~~~fD~Vv~n-PPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~---- 173 (260)
T 2ozv_A 106 ---RV---EAGLPDEHFHHVIMN-PPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMV-SGGQLSLISRPQ---- 173 (260)
T ss_dssp ---HH---HTTCCTTCEEEEEEC-CCC---------------------CCHHHHHHHHHHHEE-EEEEEEEEECGG----
T ss_pred ---hh---hhccCCCCcCEEEEC-CCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcC-CCCEEEEEEcHH----
Confidence 00 000134589999984 444432 37788999999999 899998876543
Q ss_pred CcchHHHHHHhhhcCceeEEE
Q 024311 234 NNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 234 ~~~~~~F~~~~~~~g~~~~~~ 254 (269)
...++++.+++. +...++
T Consensus 174 --~~~~~~~~l~~~-~~~~~i 191 (260)
T 2ozv_A 174 --SVAEIIAACGSR-FGGLEI 191 (260)
T ss_dssp --GHHHHHHHHTTT-EEEEEE
T ss_pred --HHHHHHHHHHhc-CCceEE
Confidence 356788888874 543443
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-10 Score=97.72 Aligned_cols=98 Identities=20% Similarity=0.202 Sum_probs=73.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||+|||+|..+..+ +..+|+++|.++.+++.+ +.+. +++++..+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a-----~~~~-----------------------~~~~~~~~ 84 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVG-----RRRA-----------------------PEATWVRA 84 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHH-----HHHC-----------------------TTSEEECC
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHH-----HHhC-----------------------CCcEEEEc
Confidence 7889999999999877665 555899999999988432 2221 12344444
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|....+ ...++||+|++
T Consensus 85 d~~~~~---------------------------------------------------------------~~~~~fD~v~~ 101 (211)
T 2gs9_A 85 WGEALP---------------------------------------------------------------FPGESFDVVLL 101 (211)
T ss_dssp CTTSCC---------------------------------------------------------------SCSSCEEEEEE
T ss_pred ccccCC---------------------------------------------------------------CCCCcEEEEEE
Confidence 433211 13458999999
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEEc
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATK 227 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k 227 (269)
..++++......+++.+.++|+ |+|++++...
T Consensus 102 ~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~ 133 (211)
T 2gs9_A 102 FTTLEFVEDVERVLLEARRVLR-PGGALVVGVL 133 (211)
T ss_dssp ESCTTTCSCHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred cChhhhcCCHHHHHHHHHHHcC-CCCEEEEEec
Confidence 9999999999999999999999 8999988753
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.17 E-value=6.3e-10 Score=90.99 Aligned_cols=121 Identities=14% Similarity=0.040 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
..+.+|||+|||+|..++.++.. +..+|+++|+++.+++. .+.|+..+. ...++ ++
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~~-----------------~~~~~-~~ 80 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRER-----ILSNAINLG-----------------VSDRI-AV 80 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHH-----HHHHHHTTT-----------------CTTSE-EE
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHH-----HHHHHHHhC-----------------CCCCE-EE
Confidence 36779999999999999887765 34589999999999844 344443210 11234 43
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
..|..+. ++ ...++||+|
T Consensus 81 ~~d~~~~--------------------------------------------------~~------------~~~~~~D~i 98 (178)
T 3hm2_A 81 QQGAPRA--------------------------------------------------FD------------DVPDNPDVI 98 (178)
T ss_dssp ECCTTGG--------------------------------------------------GG------------GCCSCCSEE
T ss_pred ecchHhh--------------------------------------------------hh------------ccCCCCCEE
Confidence 3332210 00 122589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCc
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI 249 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~ 249 (269)
+.+.++++ ..+++.+.++|+ |+|++++..... .....+.+.+++.|+
T Consensus 99 ~~~~~~~~----~~~l~~~~~~L~-~gG~l~~~~~~~-----~~~~~~~~~~~~~~~ 145 (178)
T 3hm2_A 99 FIGGGLTA----PGVFAAAWKRLP-VGGRLVANAVTV-----ESEQMLWALRKQFGG 145 (178)
T ss_dssp EECC-TTC----TTHHHHHHHTCC-TTCEEEEEECSH-----HHHHHHHHHHHHHCC
T ss_pred EECCcccH----HHHHHHHHHhcC-CCCEEEEEeecc-----ccHHHHHHHHHHcCC
Confidence 99888876 678888889998 899998876543 256678888888875
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.3e-10 Score=95.08 Aligned_cols=37 Identities=30% Similarity=0.461 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||+|||+|..++.++.. .+|+++|+++.+++.
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~ 69 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEI 69 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHH
Confidence 4689999999999999888776 499999999999844
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.1e-10 Score=101.07 Aligned_cols=129 Identities=18% Similarity=0.145 Sum_probs=88.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||+|||+|.+++.++.. +..+|++.|.++.+++ .++.|...+. + .+++++.
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~-----~a~~~~~~~~-----------------l-~~v~~~~ 136 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVA-----FVERAIEVLG-----------------L-KGARALW 136 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHH-----HHHHHHHHHT-----------------C-SSEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHH-----HHHHHHHHhC-----------------C-CceEEEE
Confidence 6789999999999999988765 4569999999999984 3455554321 1 2467766
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|.++.+. .....++||+|+
T Consensus 137 ~d~~~~~~------------------------------------------------------------~~~~~~~fD~I~ 156 (249)
T 3g89_A 137 GRAEVLAR------------------------------------------------------------EAGHREAYARAV 156 (249)
T ss_dssp CCHHHHTT------------------------------------------------------------STTTTTCEEEEE
T ss_pred CcHHHhhc------------------------------------------------------------ccccCCCceEEE
Confidence 66543210 001246899999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEE
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
+.-+ ..++.+++.+.++|+ |+|++++...... ...+.++...++..|+...++
T Consensus 157 s~a~----~~~~~ll~~~~~~Lk-pgG~l~~~~g~~~---~~e~~~~~~~l~~~G~~~~~~ 209 (249)
T 3g89_A 157 ARAV----APLCVLSELLLPFLE-VGGAAVAMKGPRV---EEELAPLPPALERLGGRLGEV 209 (249)
T ss_dssp EESS----CCHHHHHHHHGGGEE-EEEEEEEEECSCC---HHHHTTHHHHHHHHTEEEEEE
T ss_pred ECCc----CCHHHHHHHHHHHcC-CCeEEEEEeCCCc---HHHHHHHHHHHHHcCCeEEEE
Confidence 8543 467889999999999 8998776443221 235677888888889754443
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.8e-10 Score=93.67 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=40.4
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.+.++|.... ..+.+|||+|||+|..++.++..+..+|+++|+++.+++.
T Consensus 31 ~~~~~l~~~~------~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~ 80 (215)
T 2pxx_A 31 SFRALLEPEL------RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAA 80 (215)
T ss_dssp HHHHHHGGGC------CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHH
T ss_pred HHHHHHHHhc------CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHH
Confidence 4566665542 3677999999999999998888887689999999998843
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.3e-10 Score=92.31 Aligned_cols=39 Identities=26% Similarity=0.402 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||+|||+|..++.++.. +..+|++.|+++.+++.
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~ 62 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIAN 62 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHH
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHH
Confidence 5789999999999999887765 33599999999999844
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.15 E-value=4.7e-10 Score=96.15 Aligned_cols=136 Identities=15% Similarity=0.087 Sum_probs=85.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
++++|||||||+|..++.++.. + ..+|+++|+++.+++. .+.|+..+. +..+++++
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~~-----------------~~~~v~~~ 115 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAI-----TQQMLNFAG-----------------LQDKVTIL 115 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHH-----HHHHHHHHT-----------------CGGGEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHH-----HHHHHHHcC-----------------CCCceEEE
Confidence 5789999999999999888863 2 3489999999999843 455554321 12357777
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+... .+. .....++||+|
T Consensus 116 ~~d~~~~l~-----------------------------------------------~~~----------~~~~~~~fD~V 138 (221)
T 3u81_A 116 NGASQDLIP-----------------------------------------------QLK----------KKYDVDTLDMV 138 (221)
T ss_dssp ESCHHHHGG-----------------------------------------------GTT----------TTSCCCCCSEE
T ss_pred ECCHHHHHH-----------------------------------------------HHH----------HhcCCCceEEE
Confidence 666433100 000 00123689999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEEEe
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIK 256 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~~~ 256 (269)
+..-..........++..+ ++|+ |+|++++..-.. .+...|++++++...+....+.
T Consensus 139 ~~d~~~~~~~~~~~~~~~~-~~Lk-pgG~lv~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~ 195 (221)
T 3u81_A 139 FLDHWKDRYLPDTLLLEKC-GLLR-KGTVLLADNVIV-----PGTPDFLAYVRGSSSFECTHYS 195 (221)
T ss_dssp EECSCGGGHHHHHHHHHHT-TCCC-TTCEEEESCCCC-----CCCHHHHHHHHHCTTEEEEEEE
T ss_pred EEcCCcccchHHHHHHHhc-cccC-CCeEEEEeCCCC-----cchHHHHHHHhhCCCceEEEcc
Confidence 9743332222222344444 7888 899887754332 3568999999988766666544
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-09 Score=99.25 Aligned_cols=132 Identities=21% Similarity=0.211 Sum_probs=91.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||+|||+|..++.++.. +..+++++|++ .+++. .+.|+.... +..++++..
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~-----a~~~~~~~~-----------------~~~~v~~~~ 221 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEV-----AKENARIQG-----------------VASRYHTIA 221 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHH-----HHHHHHHHT-----------------CGGGEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHH-----HHHHHHhcC-----------------CCcceEEEe
Confidence 5689999999999998777765 23489999998 88843 444443220 123567766
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|....+ ....||+|+
T Consensus 222 ~d~~~~~----------------------------------------------------------------~~~~~D~v~ 237 (335)
T 2r3s_A 222 GSAFEVD----------------------------------------------------------------YGNDYDLVL 237 (335)
T ss_dssp SCTTTSC----------------------------------------------------------------CCSCEEEEE
T ss_pred cccccCC----------------------------------------------------------------CCCCCcEEE
Confidence 6644321 122499999
Q ss_pred Eecccccc--CCHHHHHHHHHHhcCCCCeEEEEEEcccc---------------------cccCcchHHHHHHhhhcCce
Q 024311 194 LTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKNY---------------------VGFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 194 asD~iY~~--~~~~~L~~~l~~~L~~p~g~~~va~k~~~---------------------fg~~~~~~~F~~~~~~~g~~ 250 (269)
++.++++. +....+++.+.++|+ |+|+++|...... .+...+..++.+.+++.||-
T Consensus 238 ~~~~l~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~ 316 (335)
T 2r3s_A 238 LPNFLHHFDVATCEQLLRKIKTALA-VEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFS 316 (335)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCS
T ss_pred EcchhccCCHHHHHHHHHHHHHhCC-CCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCC
Confidence 99999987 445688999999998 8998887643211 11223578899999999986
Q ss_pred eEEE
Q 024311 251 GAHL 254 (269)
Q Consensus 251 ~~~~ 254 (269)
..++
T Consensus 317 ~~~~ 320 (335)
T 2r3s_A 317 HSQL 320 (335)
T ss_dssp EEEE
T ss_pred eeeE
Confidence 5555
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-09 Score=95.26 Aligned_cols=109 Identities=20% Similarity=0.249 Sum_probs=77.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-CC-CeEEEEeCCHH------HHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCC
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAE------TIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTL 105 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-ga-~~Vv~tD~~~~------vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~ 105 (269)
.++.+|||+|||+|..++.++.. |+ .+|+++|+++. +++ ..+.|+..+ ..
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~-----~a~~~~~~~-----------------~~ 99 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLG-----QAWNHLLAG-----------------PL 99 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHH-----HHHHHHHTS-----------------TT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHH-----HHHHHHHhc-----------------CC
Confidence 36889999999999999887766 43 58999999986 663 333443221 01
Q ss_pred CCeeeeecCC-CCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhccccc
Q 024311 106 APSVHFYAGD-WEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQ 184 (269)
Q Consensus 106 ~~~v~~~~~d-w~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~ 184 (269)
.+++++..+| ..... + ..
T Consensus 100 ~~~v~~~~~d~~~~~~-------------------------------------------------~------------~~ 118 (275)
T 3bkx_A 100 GDRLTVHFNTNLSDDL-------------------------------------------------G------------PI 118 (275)
T ss_dssp GGGEEEECSCCTTTCC-------------------------------------------------G------------GG
T ss_pred CCceEEEECChhhhcc-------------------------------------------------C------------CC
Confidence 2356666665 11100 0 01
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
..++||+|++..++++......+.+.++++++ |+|++++..
T Consensus 119 ~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~-~gG~l~~~~ 159 (275)
T 3bkx_A 119 ADQHFDRVVLAHSLWYFASANALALLFKNMAA-VCDHVDVAE 159 (275)
T ss_dssp TTCCCSEEEEESCGGGSSCHHHHHHHHHHHTT-TCSEEEEEE
T ss_pred CCCCEEEEEEccchhhCCCHHHHHHHHHHHhC-CCCEEEEEE
Confidence 34689999999999999999998888888776 899988863
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.9e-10 Score=103.95 Aligned_cols=103 Identities=21% Similarity=0.323 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.++++|||+|||+|..++.++..|+.+|+++|.++ +++. .+.|+..+. ...+++++.
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~~~-----a~~~~~~~~-----------------~~~~i~~~~ 93 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEM-----AKELVELNG-----------------FSDKITLLR 93 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHH-----HHHHHHHTT-----------------CTTTEEEEE
T ss_pred cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHH-HHHH-----HHHHHHHcC-----------------CCCCEEEEE
Confidence 46889999999999999999998888999999994 6633 344443221 223566666
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+.+ ...++||+|+
T Consensus 94 ~d~~~~~---------------------------------------------------------------~~~~~~D~Iv 110 (328)
T 1g6q_1 94 GKLEDVH---------------------------------------------------------------LPFPKVDIII 110 (328)
T ss_dssp SCTTTSC---------------------------------------------------------------CSSSCEEEEE
T ss_pred Cchhhcc---------------------------------------------------------------CCCCcccEEE
Confidence 6544321 1235899999
Q ss_pred Eec---cccccCCHHHHHHHHHHhcCCCCeEEE
Q 024311 194 LTE---IPYSVTSLKKLYLLIKKCLRPPYGVVY 223 (269)
Q Consensus 194 asD---~iY~~~~~~~L~~~l~~~L~~p~g~~~ 223 (269)
+.- .+.+....+.++..++++|+ |+|+++
T Consensus 111 s~~~~~~l~~~~~~~~~l~~~~~~Lk-pgG~li 142 (328)
T 1g6q_1 111 SEWMGYFLLYESMMDTVLYARDHYLV-EGGLIF 142 (328)
T ss_dssp ECCCBTTBSTTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred EeCchhhcccHHHHHHHHHHHHhhcC-CCeEEE
Confidence 863 44456778889999999999 888876
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=7.5e-11 Score=102.02 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=34.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||+|||+|..++.++..+..+|+++|+++.+++.
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~ 98 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQR 98 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHH
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHH
Confidence 577999999999999988887776689999999999854
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.1e-10 Score=97.34 Aligned_cols=107 Identities=16% Similarity=0.106 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
..+.+|||+|||+|..++.++..+. +|+++|+++.+++. .+.|.. ..++++..
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~-----a~~~~~---------------------~~~~~~~~ 107 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEI-----AAKENT---------------------AANISYRL 107 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHH-----HHHHSC---------------------CTTEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHH-----HHHhCc---------------------ccCceEEE
Confidence 4678999999999999999988887 89999999998843 232220 12567777
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+.+... .| .....||+|+
T Consensus 108 ~d~~~~~~~~---------------------~~-------------------------------------~~~~~~d~v~ 129 (245)
T 3ggd_A 108 LDGLVPEQAA---------------------QI-------------------------------------HSEIGDANIY 129 (245)
T ss_dssp CCTTCHHHHH---------------------HH-------------------------------------HHHHCSCEEE
T ss_pred Cccccccccc---------------------cc-------------------------------------ccccCccEEE
Confidence 7766532100 00 0112599999
Q ss_pred EeccccccC--CHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 194 LTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 194 asD~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+..++++.. ....+++.+.++|+ |+|++++..
T Consensus 130 ~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~ 163 (245)
T 3ggd_A 130 MRTGFHHIPVEKRELLGQSLRILLG-KQGAMYLIE 163 (245)
T ss_dssp EESSSTTSCGGGHHHHHHHHHHHHT-TTCEEEEEE
T ss_pred EcchhhcCCHHHHHHHHHHHHHHcC-CCCEEEEEe
Confidence 999999988 78899999999999 899877764
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.12 E-value=4.1e-10 Score=100.24 Aligned_cols=68 Identities=16% Similarity=0.112 Sum_probs=49.6
Q ss_pred CCCccEEEEeccccc----cCCHHHHHHHHHHhcCCCCeEEEEEEc--cccccc--------CcchHHHHHHhhhcCcee
Q 024311 186 EGGYDVILLTEIPYS----VTSLKKLYLLIKKCLRPPYGVVYLATK--KNYVGF--------NNAARHLRSLVDEEGIFG 251 (269)
Q Consensus 186 ~~~fDlIlasD~iY~----~~~~~~L~~~l~~~L~~p~g~~~va~k--~~~fg~--------~~~~~~F~~~~~~~g~~~ 251 (269)
.++||+|+++.++++ ......+++.+.++|+ |+|++++... ..++.. .-+..++.+.+++.||-.
T Consensus 172 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lk-pGG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 250 (289)
T 2g72_A 172 PLPADALVSAFCLEAVSPDLASFQRALDHITTLLR-PGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKV 250 (289)
T ss_dssp CSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred CCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcC-CCCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeE
Confidence 457999999999988 5578889999999999 8999888631 111101 124678889999999754
Q ss_pred EEE
Q 024311 252 AHL 254 (269)
Q Consensus 252 ~~~ 254 (269)
.++
T Consensus 251 ~~~ 253 (289)
T 2g72_A 251 RDL 253 (289)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=8.7e-11 Score=102.38 Aligned_cols=105 Identities=18% Similarity=0.239 Sum_probs=73.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.|.+|||+|||+|.....++..++.+|+++|.++++++. .+.+... ...+++++.+
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~-----a~~~~~~-------------------~~~~~~~~~~ 115 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQR-----LRDWAPR-------------------QTHKVIPLKG 115 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHH-----HHHHGGG-------------------CSSEEEEEES
T ss_pred CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHH-----HHHHHhh-------------------CCCceEEEee
Confidence 688999999999999988887766689999999999844 3333211 1245667777
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
||..... .....+||.|+.
T Consensus 116 ~a~~~~~-------------------------------------------------------------~~~~~~FD~i~~ 134 (236)
T 3orh_A 116 LWEDVAP-------------------------------------------------------------TLPDGHFDGILY 134 (236)
T ss_dssp CHHHHGG-------------------------------------------------------------GSCTTCEEEEEE
T ss_pred hHHhhcc-------------------------------------------------------------cccccCCceEEE
Confidence 7654310 023457998874
Q ss_pred -----eccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 195 -----TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 195 -----sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
...+.+....+.+++.+.++|+ |+|++.+.
T Consensus 135 D~~~~~~~~~~~~~~~~~~~e~~rvLk-PGG~l~f~ 169 (236)
T 3orh_A 135 DTYPLSEETWHTHQFNFIKNHAFRLLK-PGGVLTYC 169 (236)
T ss_dssp CCCCCBGGGTTTHHHHHHHHTHHHHEE-EEEEEEEC
T ss_pred eeeecccchhhhcchhhhhhhhhheeC-CCCEEEEE
Confidence 3333444456778899999999 99988754
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-10 Score=100.51 Aligned_cols=52 Identities=25% Similarity=0.202 Sum_probs=41.7
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
..|.+|+..... ..++.+|||+|||+|...+.++..|. +|++.|+++.+++.
T Consensus 54 ~~l~~~~~~~~~----~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~ 105 (252)
T 2gb4_A 54 QLLKKHLDTFLK----GQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIRE 105 (252)
T ss_dssp HHHHHHHHHHHT----TCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHH
T ss_pred HHHHHHHHHhcc----CCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence 356777755421 12678999999999999999998988 89999999999854
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.4e-10 Score=107.00 Aligned_cols=126 Identities=19% Similarity=0.186 Sum_probs=85.3
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCC-eeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAP-SVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~ 112 (269)
..+++|||+|||+|..++.+|..|+++|++.|.++.+++ ..+.|+..|. +.. +++|+
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~-----~A~~N~~~n~-----------------~~~~~v~~~ 268 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRA-----LSLAHFEANH-----------------LDMANHQLV 268 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHH-----HHHHHHHHTT-----------------CCCTTEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHH-----HHHHHHHHcC-----------------CCccceEEE
Confidence 367899999999999999999888889999999999994 4455555431 122 56777
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+... .|. ....+||+|
T Consensus 269 ~~D~~~~l~-----------------------------------------------------~~~------~~~~~fD~I 289 (385)
T 2b78_A 269 VMDVFDYFK-----------------------------------------------------YAR------RHHLTYDII 289 (385)
T ss_dssp ESCHHHHHH-----------------------------------------------------HHH------HTTCCEEEE
T ss_pred ECCHHHHHH-----------------------------------------------------HHH------HhCCCccEE
Confidence 666443100 000 123589999
Q ss_pred EEecccccc----------CCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhh
Q 024311 193 LLTEIPYSV----------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDE 246 (269)
Q Consensus 193 lasD~iY~~----------~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~ 246 (269)
+. |..|.. ..+..++..+.++|+ |+|++++++....+ ..+.|.+.+++
T Consensus 290 i~-DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~-pgG~l~~~~~~~~~----~~~~~~~~i~~ 347 (385)
T 2b78_A 290 II-DPPSFARNKKEVFSVSKDYHKLIRQGLEILS-ENGLIIASTNAANM----TVSQFKKQIEK 347 (385)
T ss_dssp EE-CCCCC-----CCCCHHHHHHHHHHHHHHTEE-EEEEEEEEECCTTS----CHHHHHHHHHH
T ss_pred EE-CCCCCCCChhhHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCCCcC----CHHHHHHHHHH
Confidence 97 555531 223345666677888 99999999877654 35667666553
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-09 Score=92.13 Aligned_cols=101 Identities=20% Similarity=0.312 Sum_probs=72.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
++.+|||+|||+|..++.++.. +..+|+++|.++.+++. .+.|...+. . .++++..
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~~-----------------~-~~v~~~~ 121 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRF-----LRQVQHELK-----------------L-ENIEPVQ 121 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHH-----HHHHHHHTT-----------------C-SSEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHH-----HHHHHHHcC-----------------C-CCeEEEe
Confidence 5789999999999999887764 34599999999999843 444543320 1 2366666
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|+...+ ..++||+|+
T Consensus 122 ~d~~~~~----------------------------------------------------------------~~~~~D~i~ 137 (207)
T 1jsx_A 122 SRVEEFP----------------------------------------------------------------SEPPFDGVI 137 (207)
T ss_dssp CCTTTSC----------------------------------------------------------------CCSCEEEEE
T ss_pred cchhhCC----------------------------------------------------------------ccCCcCEEE
Confidence 6654321 134899999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEEEc
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATK 227 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k 227 (269)
+.. ....+.+++.+.++|+ |+|.+++...
T Consensus 138 ~~~----~~~~~~~l~~~~~~L~-~gG~l~~~~~ 166 (207)
T 1jsx_A 138 SRA----FASLNDMVSWCHHLPG-EQGRFYALKG 166 (207)
T ss_dssp CSC----SSSHHHHHHHHTTSEE-EEEEEEEEES
T ss_pred Eec----cCCHHHHHHHHHHhcC-CCcEEEEEeC
Confidence 743 2567889999999998 8999888754
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.7e-10 Score=105.03 Aligned_cols=124 Identities=21% Similarity=0.256 Sum_probs=85.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCC-CCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTL-APSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~ 113 (269)
++++|||||||+|..++.++..|+.+|++.|+++.+++ ..+.|+..|. + ..+++++.
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~-----~a~~n~~~ng-----------------l~~~~v~~~~ 277 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALD-----IARQNVELNK-----------------LDLSKAEFVR 277 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHH-----HHHHHHHHTT-----------------CCGGGEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHH-----HHHHHHHHcC-----------------CCccceEEEE
Confidence 67899999999999999999988889999999999984 4455554431 1 12566766
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+... .+ .....+||+|+
T Consensus 278 ~D~~~~~~-----------------------------------------------------~~------~~~~~~fD~Ii 298 (396)
T 3c0k_A 278 DDVFKLLR-----------------------------------------------------TY------RDRGEKFDVIV 298 (396)
T ss_dssp SCHHHHHH-----------------------------------------------------HH------HHTTCCEEEEE
T ss_pred CCHHHHHH-----------------------------------------------------HH------HhcCCCCCEEE
Confidence 66443210 00 01235899999
Q ss_pred Eecccccc----------CCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhh
Q 024311 194 LTEIPYSV----------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVD 245 (269)
Q Consensus 194 asD~iY~~----------~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~ 245 (269)
+ |..|.. ..+..++..+.++|+ |+|++++++....+. .+.|.+.++
T Consensus 299 ~-dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~----~~~~~~~i~ 354 (396)
T 3c0k_A 299 M-DPPKFVENKSQLMGACRGYKDINMLAIQLLN-EGGILLTFSCSGLMT----SDLFQKIIA 354 (396)
T ss_dssp E-CCSSTTTCSSSSSCCCTHHHHHHHHHHHTEE-EEEEEEEEECCTTCC----HHHHHHHHH
T ss_pred E-CCCCCCCChhHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCCCcCC----HHHHHHHHH
Confidence 8 655532 456677777788898 899999988765442 335554443
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.10 E-value=9.5e-10 Score=97.59 Aligned_cols=126 Identities=14% Similarity=0.217 Sum_probs=88.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
..+.+|||+|||+|..++.++.. +..+|++.|.++.+++ ..+.|+..+. -..++++
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~-----~a~~~~~~~~-----------------g~~~v~~ 166 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLK-----KAMDNLSEFY-----------------DIGNVRT 166 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHH-----HHHHHHHTTS-----------------CCTTEEE
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHH-----HHHHHHHhcC-----------------CCCcEEE
Confidence 36789999999999999887765 2359999999999984 3444543210 0124556
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|+.+. ...++||+
T Consensus 167 ~~~d~~~~----------------------------------------------------------------~~~~~fD~ 182 (275)
T 1yb2_A 167 SRSDIADF----------------------------------------------------------------ISDQMYDA 182 (275)
T ss_dssp ECSCTTTC----------------------------------------------------------------CCSCCEEE
T ss_pred EECchhcc----------------------------------------------------------------CcCCCccE
Confidence 55554321 12358999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEEEe
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIK 256 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~~~ 256 (269)
|++ +......+++.+.++|+ |+|++++.+... .....+.+.+++.|+...++..
T Consensus 183 Vi~-----~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~-----~~~~~~~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 183 VIA-----DIPDPWNHVQKIASMMK-PGSVATFYLPNF-----DQSEKTVLSLSASGMHHLETVE 236 (275)
T ss_dssp EEE-----CCSCGGGSHHHHHHTEE-EEEEEEEEESSH-----HHHHHHHHHSGGGTEEEEEEEE
T ss_pred EEE-----cCcCHHHHHHHHHHHcC-CCCEEEEEeCCH-----HHHHHHHHHHHHCCCeEEEEEE
Confidence 998 34455678888999998 899999887653 2467888999999976555543
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.10 E-value=9.4e-10 Score=95.77 Aligned_cols=124 Identities=19% Similarity=0.202 Sum_probs=87.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
..+.+|||+|||+|..++.++.. + ..+|++.|+++++++. .+.|+..+. ...++++
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~-----a~~~~~~~~-----------------~~~~v~~ 149 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKL-----AWENIKWAG-----------------FDDRVTI 149 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHH-----HHHHHHHHT-----------------CTTTEEE
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHH-----HHHHHHHcC-----------------CCCceEE
Confidence 46889999999999999888776 4 4599999999999844 445543321 1123566
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|..+. ....+||+
T Consensus 150 ~~~d~~~~----------------------------------------------------------------~~~~~~D~ 165 (255)
T 3mb5_A 150 KLKDIYEG----------------------------------------------------------------IEEENVDH 165 (255)
T ss_dssp ECSCGGGC----------------------------------------------------------------CCCCSEEE
T ss_pred EECchhhc----------------------------------------------------------------cCCCCcCE
Confidence 55553321 12357999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcC--ceeEEE
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEG--IFGAHL 254 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g--~~~~~~ 254 (269)
|++ ++.....+++.+.++|+ |+|++++..... ....++.+.+++.| |...++
T Consensus 166 v~~-----~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~-----~~~~~~~~~l~~~g~~f~~~~~ 219 (255)
T 3mb5_A 166 VIL-----DLPQPERVVEHAAKALK-PGGFFVAYTPCS-----NQVMRLHEKLREFKDYFMKPRT 219 (255)
T ss_dssp EEE-----CSSCGGGGHHHHHHHEE-EEEEEEEEESSH-----HHHHHHHHHHHHTGGGBSCCEE
T ss_pred EEE-----CCCCHHHHHHHHHHHcC-CCCEEEEEECCH-----HHHHHHHHHHHHcCCCccccEE
Confidence 997 34455677888889998 899998876433 24678889999999 755555
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-09 Score=93.91 Aligned_cols=132 Identities=15% Similarity=0.121 Sum_probs=82.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||+|||+|..++.++.. |..+|++.|+++.+++. ++.|... .+++.+..
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~-----a~~~~~~--------------------~~~v~~~~ 128 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRE-----LLDACAE--------------------RENIIPIL 128 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHH-----HHHHTTT--------------------CTTEEEEE
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHH-----HHHHhhc--------------------CCCeEEEE
Confidence 6789999999999999887765 55699999999998843 3333211 13456655
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|...... .+ ....+||+|+
T Consensus 129 ~d~~~~~~-----------------------------------------------~~-------------~~~~~~D~v~ 148 (230)
T 1fbn_A 129 GDANKPQE-----------------------------------------------YA-------------NIVEKVDVIY 148 (230)
T ss_dssp CCTTCGGG-----------------------------------------------GT-------------TTSCCEEEEE
T ss_pred CCCCCccc-----------------------------------------------cc-------------ccCccEEEEE
Confidence 55443110 00 0125899999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcc----hHHHHHHhhhcCceeEEE
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNA----ARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~----~~~F~~~~~~~g~~~~~~ 254 (269)
.|+ ..+...+.+++.+.++|+ |+|++++..+......+.. ..+-+..+++.||-..++
T Consensus 149 -~~~-~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~l~~l~~~Gf~~~~~ 210 (230)
T 1fbn_A 149 -EDV-AQPNQAEILIKNAKWFLK-KGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDE 210 (230)
T ss_dssp -ECC-CSTTHHHHHHHHHHHHEE-EEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHTEEEEEE
T ss_pred -Eec-CChhHHHHHHHHHHHhCC-CCcEEEEEEecCCCCCCCCHHHhhHHHHHHHHHCCCEEEEE
Confidence 343 334445788999999999 8999998744322111111 112233778888743333
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-09 Score=92.51 Aligned_cols=125 Identities=20% Similarity=0.201 Sum_probs=87.3
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHh-hhhhccCCCCCCCCCccCCCCeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQA-RERQSRQPESSLTPSRQTLAPSVH 110 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~-~~~~~~~~~~~~~~~~~~~~~~v~ 110 (269)
..+.+|||+|||+|..++.++.. + ..+|++.|.++.+++. .+.|+..+ . ..+++
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~-----a~~~~~~~~g------------------~~~v~ 151 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQ-----AERNVRAFWQ------------------VENVR 151 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHH-----HHHHHHHHCC------------------CCCEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHH-----HHHHHHHhcC------------------CCCEE
Confidence 46789999999999999888776 4 3599999999999844 34444321 0 12455
Q ss_pred eecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 024311 111 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 190 (269)
Q Consensus 111 ~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fD 190 (269)
+..+|..+.+ ...++||
T Consensus 152 ~~~~d~~~~~---------------------------------------------------------------~~~~~~D 168 (258)
T 2pwy_A 152 FHLGKLEEAE---------------------------------------------------------------LEEAAYD 168 (258)
T ss_dssp EEESCGGGCC---------------------------------------------------------------CCTTCEE
T ss_pred EEECchhhcC---------------------------------------------------------------CCCCCcC
Confidence 5555433210 1235899
Q ss_pred EEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEEE
Q 024311 191 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLI 255 (269)
Q Consensus 191 lIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~~ 255 (269)
+|+. ++.....+++.+.++|+ |+|++++..... ....++++.+++.||...++.
T Consensus 169 ~v~~-----~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~-----~~~~~~~~~l~~~gf~~~~~~ 222 (258)
T 2pwy_A 169 GVAL-----DLMEPWKVLEKAALALK-PDRFLVAYLPNI-----TQVLELVRAAEAHPFRLERVL 222 (258)
T ss_dssp EEEE-----ESSCGGGGHHHHHHHEE-EEEEEEEEESCH-----HHHHHHHHHHTTTTEEEEEEE
T ss_pred EEEE-----CCcCHHHHHHHHHHhCC-CCCEEEEEeCCH-----HHHHHHHHHHHHCCCceEEEE
Confidence 9997 24455678888999998 899988877543 246788888999997655543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.09 E-value=9.5e-10 Score=95.30 Aligned_cols=39 Identities=36% Similarity=0.553 Sum_probs=34.5
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.++.+|||+|||+|..++.++..|. +|++.|+++.+++.
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~ 78 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRV 78 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHH
Confidence 3578999999999999998888877 89999999999844
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.4e-10 Score=99.21 Aligned_cols=39 Identities=21% Similarity=0.106 Sum_probs=35.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
..+.+|||||||+|..++.++..|+ +|+++|.++.+++.
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~ 82 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDD 82 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred CCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHH
Confidence 4688999999999999999998887 89999999999843
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.4e-09 Score=100.02 Aligned_cols=110 Identities=16% Similarity=0.251 Sum_probs=73.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||||||+|..++.++..+ ..+|+++|+++.+++. .+.|+..+.. . ...+++|..
T Consensus 222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~-----Ar~n~~~ngl-~--------------~~~~v~~~~ 281 (375)
T 4dcm_A 222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVAS-----SRLNVETNMP-E--------------ALDRCEFMI 281 (375)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHH-----HHHHHHHHCG-G--------------GGGGEEEEE
T ss_pred CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHH-----HHHHHHHcCC-C--------------cCceEEEEe
Confidence 45799999999999999988875 4599999999999844 4455543310 0 001344444
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
.|.... ...++||+|+
T Consensus 282 ~D~~~~----------------------------------------------------------------~~~~~fD~Ii 297 (375)
T 4dcm_A 282 NNALSG----------------------------------------------------------------VEPFRFNAVL 297 (375)
T ss_dssp CSTTTT----------------------------------------------------------------CCTTCEEEEE
T ss_pred chhhcc----------------------------------------------------------------CCCCCeeEEE
Confidence 443220 1345899999
Q ss_pred Eecccccc-----CCHHHHHHHHHHhcCCCCeEEEEEEccc
Q 024311 194 LTEIPYSV-----TSLKKLYLLIKKCLRPPYGVVYLATKKN 229 (269)
Q Consensus 194 asD~iY~~-----~~~~~L~~~l~~~L~~p~g~~~va~k~~ 229 (269)
+...++.. .....+++.+.++|+ |+|++++...++
T Consensus 298 ~nppfh~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~iv~n~~ 337 (375)
T 4dcm_A 298 CNPPFHQQHALTDNVAWEMFHHARRCLK-INGELYIVANRH 337 (375)
T ss_dssp ECCCC-------CCHHHHHHHHHHHHEE-EEEEEEEEEETT
T ss_pred ECCCcccCcccCHHHHHHHHHHHHHhCC-CCcEEEEEEECC
Confidence 97666532 223468889999999 899999876553
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.8e-09 Score=91.23 Aligned_cols=129 Identities=12% Similarity=0.017 Sum_probs=83.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||||||+|..++.++... ..+|+++|+++.+++. .+.|+..+ -.++++++.
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~-----a~~~~~~~------------------~~~nv~~~~ 94 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVT-----AVQKVKDS------------------EAQNVKLLN 94 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHH-----HHHHHHHS------------------CCSSEEEEC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHH-----HHHHHHHc------------------CCCCEEEEe
Confidence 46799999999999998877653 3589999999999844 34444321 013577776
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|....+.. ...+.||.|+
T Consensus 95 ~d~~~l~~~-------------------------------------------------------------~~~~~~d~v~ 113 (213)
T 2fca_A 95 IDADTLTDV-------------------------------------------------------------FEPGEVKRVY 113 (213)
T ss_dssp CCGGGHHHH-------------------------------------------------------------CCTTSCCEEE
T ss_pred CCHHHHHhh-------------------------------------------------------------cCcCCcCEEE
Confidence 765542100 1234688887
Q ss_pred EeccccccC--------CHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEE
Q 024311 194 LTEIPYSVT--------SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAH 253 (269)
Q Consensus 194 asD~iY~~~--------~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~ 253 (269)
..-..-++. ..+.+++.+.++|+ |+|.+++.+....+ ....++.+++.|+....
T Consensus 114 ~~~~~p~~~~~~~~~rl~~~~~l~~~~~~Lk-pgG~l~~~td~~~~-----~~~~~~~~~~~g~~~~~ 175 (213)
T 2fca_A 114 LNFSDPWPKKRHEKRRLTYSHFLKKYEEVMG-KGGSIHFKTDNRGL-----FEYSLKSFSEYGLLLTY 175 (213)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHHT-TSCEEEEEESCHHH-----HHHHHHHHHHHTCEEEE
T ss_pred EECCCCCcCccccccccCcHHHHHHHHHHcC-CCCEEEEEeCCHHH-----HHHHHHHHHHCCCcccc
Confidence 642211111 14789999999999 89999998743211 23445667777764333
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-09 Score=92.27 Aligned_cols=136 Identities=18% Similarity=0.171 Sum_probs=87.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
++++|||+|||+|..++.++.. + ..+|+++|+++.+++. .+.|+... ....++++.
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~-----------------~~~~~v~~~ 115 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADI-----ARSNIERA-----------------NLNDRVEVR 115 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHH-----HHHHHHHT-----------------TCTTTEEEE
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHc-----------------CCCCcEEEE
Confidence 5789999999999999888765 1 2489999999999843 44555332 022346776
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+... ... .....+||+|
T Consensus 116 ~~d~~~~~~--------------------------------------------------------~~~--~~~~~~fD~v 137 (223)
T 3duw_A 116 TGLALDSLQ--------------------------------------------------------QIE--NEKYEPFDFI 137 (223)
T ss_dssp ESCHHHHHH--------------------------------------------------------HHH--HTTCCCCSEE
T ss_pred EcCHHHHHH--------------------------------------------------------HHH--hcCCCCcCEE
Confidence 666432100 000 0122579999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccccc----------CcchHHHHHHhhhcCceeEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------NNAARHLRSLVDEEGIFGAHLI 255 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~----------~~~~~~F~~~~~~~g~~~~~~~ 255 (269)
+. |.. ...++.+++.+.++|+ |+|++++..-. +.|. ...+.+|.+.++...-+...++
T Consensus 138 ~~-d~~--~~~~~~~l~~~~~~L~-pgG~lv~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 205 (223)
T 3duw_A 138 FI-DAD--KQNNPAYFEWALKLSR-PGTVIIGDNVV-REGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATAL 205 (223)
T ss_dssp EE-CSC--GGGHHHHHHHHHHTCC-TTCEEEEESCS-GGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred EE-cCC--cHHHHHHHHHHHHhcC-CCcEEEEeCCC-cCCcccCccccchHHHHHHHHHHHHhhCCCeEEEEE
Confidence 96 332 4567888999999998 88977665322 2110 0235889999988766655553
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.07 E-value=9.1e-10 Score=101.44 Aligned_cols=105 Identities=25% Similarity=0.413 Sum_probs=73.4
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
..++++|||+|||+|..++.++..|+.+|++.|.++ +++. .+.|+..+. +..++++.
T Consensus 48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~-----a~~~~~~~~-----------------l~~~v~~~ 104 (348)
T 2y1w_A 48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQH-----AEVLVKSNN-----------------LTDRIVVI 104 (348)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHH-----HHHHHHHTT-----------------CTTTEEEE
T ss_pred cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHH-----HHHHHHHcC-----------------CCCcEEEE
Confidence 347899999999999999999998888999999996 6532 333333220 22356666
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.+ .+++||+|
T Consensus 105 ~~d~~~~~----------------------------------------------------------------~~~~~D~I 120 (348)
T 2y1w_A 105 PGKVEEVS----------------------------------------------------------------LPEQVDII 120 (348)
T ss_dssp ESCTTTCC----------------------------------------------------------------CSSCEEEE
T ss_pred EcchhhCC----------------------------------------------------------------CCCceeEE
Confidence 66654321 22479999
Q ss_pred EEecccccc--CCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 193 LLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 193 lasD~iY~~--~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
++..+.|+. +.....+..++++|+ |+|++++.
T Consensus 121 vs~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~ 154 (348)
T 2y1w_A 121 ISEPMGYMLFNERMLESYLHAKKYLK-PSGNMFPT 154 (348)
T ss_dssp EECCCBTTBTTTSHHHHHHHGGGGEE-EEEEEESC
T ss_pred EEeCchhcCChHHHHHHHHHHHhhcC-CCeEEEEe
Confidence 998777643 344555666788998 89988754
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.6e-09 Score=96.04 Aligned_cols=125 Identities=18% Similarity=0.141 Sum_probs=86.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
..+.+|||+|||+|..++.++.. + ..+|++.|.++++++. .+.|+..+. +..++++
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~~-----------------~~~~v~~ 168 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKL-----AESNLTKWG-----------------LIERVTI 168 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHH-----HHHHHHHTT-----------------CGGGEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHH-----HHHHHHHcC-----------------CCCCEEE
Confidence 36789999999999999888776 4 4599999999999844 444443220 1124555
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|+.+. ....+||+
T Consensus 169 ~~~d~~~~----------------------------------------------------------------~~~~~~D~ 184 (277)
T 1o54_A 169 KVRDISEG----------------------------------------------------------------FDEKDVDA 184 (277)
T ss_dssp ECCCGGGC----------------------------------------------------------------CSCCSEEE
T ss_pred EECCHHHc----------------------------------------------------------------ccCCccCE
Confidence 44443221 12347999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEEE
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLI 255 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~~ 255 (269)
|++ | +.....+++.+.++|+ |+|++++..... ....++.+.+++.||...++.
T Consensus 185 V~~-~----~~~~~~~l~~~~~~L~-pgG~l~~~~~~~-----~~~~~~~~~l~~~gf~~~~~~ 237 (277)
T 1o54_A 185 LFL-D----VPDPWNYIDKCWEALK-GGGRFATVCPTT-----NQVQETLKKLQELPFIRIEVW 237 (277)
T ss_dssp EEE-C----CSCGGGTHHHHHHHEE-EEEEEEEEESSH-----HHHHHHHHHHHHSSEEEEEEE
T ss_pred EEE-C----CcCHHHHHHHHHHHcC-CCCEEEEEeCCH-----HHHHHHHHHHHHCCCceeEEE
Confidence 997 3 3445577888888998 899998877543 246788888889897655553
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.5e-11 Score=103.33 Aligned_cols=133 Identities=21% Similarity=0.186 Sum_probs=85.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+.+|||+|||+|..++.++..+. +|+++|+++.+++. .+.|+..+. +..++++..+
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~-~v~~vD~s~~~~~~-----a~~~~~~~~-----------------~~~~~~~~~~ 134 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGM-RVIAIDIDPVKIAL-----ARNNAEVYG-----------------IADKIEFICG 134 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHHHHTT-----------------CGGGEEEEES
T ss_pred CCCEEEECccccCHHHHHHHHcCC-EEEEEECCHHHHHH-----HHHHHHHcC-----------------CCcCeEEEEC
Confidence 688999999999999999998884 99999999999844 455554320 1135666666
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|+...+ ...+||+|++
T Consensus 135 d~~~~~----------------------------------------------------------------~~~~~D~v~~ 150 (241)
T 3gdh_A 135 DFLLLA----------------------------------------------------------------SFLKADVVFL 150 (241)
T ss_dssp CHHHHG----------------------------------------------------------------GGCCCSEEEE
T ss_pred ChHHhc----------------------------------------------------------------ccCCCCEEEE
Confidence 543311 2348999998
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccc-------cccCcchHHHHHHhhhcCceeEEEE
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY-------VGFNNAARHLRSLVDEEGIFGAHLI 255 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~-------fg~~~~~~~F~~~~~~~g~~~~~~~ 255 (269)
...+.........+..++++|+ |+|.+++...+.+ ....-....+...++..|.+..+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~L~-pgG~~i~~~~~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~~ 217 (241)
T 3gdh_A 151 SPPWGGPDYATAETFDIRTMMS-PDGFEIFRLSKKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQN 217 (241)
T ss_dssp CCCCSSGGGGGSSSBCTTTSCS-SCHHHHHHHHHHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEEEE
T ss_pred CCCcCCcchhhhHHHHHHhhcC-CcceeHHHHHHhhCCceEEECCCCCCHHHHHHHhccCCCEEEEeh
Confidence 6666655555545556677787 7777554421111 0111245677777777776554443
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.8e-09 Score=93.14 Aligned_cols=122 Identities=11% Similarity=0.101 Sum_probs=82.3
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
-+|.+|||+|||+|..++.++..+ +.+|+++|.++..+ ...+.|+..+. +..++++.
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al-----~~A~~N~~~~g-----------------l~~~i~~~ 71 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPY-----QSAVKNVEAHG-----------------LKEKIQVR 71 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHH-----HHHHHHHHHTT-----------------CTTTEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHH-----HHHHHHHHHcC-----------------CCceEEEE
Confidence 367799999999999999999987 46899999999998 44556665431 22356666
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|+-+. + ....+||+|
T Consensus 72 ~~d~l~~--------------------------------------------------l-------------~~~~~~D~I 88 (225)
T 3kr9_A 72 LANGLAA--------------------------------------------------F-------------EETDQVSVI 88 (225)
T ss_dssp ECSGGGG--------------------------------------------------C-------------CGGGCCCEE
T ss_pred ECchhhh--------------------------------------------------c-------------ccCcCCCEE
Confidence 6654321 0 011269988
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCce
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~ 250 (269)
+-+-.-- .....++......|+ +++.+++.... +.....+.+++.||.
T Consensus 89 viaG~Gg--~~i~~Il~~~~~~L~-~~~~lVlq~~~-------~~~~vr~~L~~~Gf~ 136 (225)
T 3kr9_A 89 TIAGMGG--RLIARILEEGLGKLA-NVERLILQPNN-------REDDLRIWLQDHGFQ 136 (225)
T ss_dssp EEEEECH--HHHHHHHHHTGGGCT-TCCEEEEEESS-------CHHHHHHHHHHTTEE
T ss_pred EEcCCCh--HHHHHHHHHHHHHhC-CCCEEEEECCC-------CHHHHHHHHHHCCCE
Confidence 8554321 234556666666777 77776665442 577888889999974
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.8e-09 Score=86.02 Aligned_cols=141 Identities=14% Similarity=0.163 Sum_probs=90.9
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhc
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQS 91 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~ 91 (269)
.+...+.+.+... .....+.+|||+|||+|..++.++.. |+ .+|+++|.++ +++.
T Consensus 5 r~~~~l~~~~~~~----~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~------------------ 61 (180)
T 1ej0_A 5 RAWFKLDEIQQSD----KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI------------------ 61 (180)
T ss_dssp HHHHHHHHHHHHH----CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC------------------
T ss_pred hHHHHHHHHHHHh----CCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc------------------
Confidence 3445556655543 12346789999999999999887765 44 5999999998 5410
Q ss_pred cCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 024311 92 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS 171 (269)
Q Consensus 92 ~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (269)
+++++..+|+...+...
T Consensus 62 ---------------~~~~~~~~d~~~~~~~~------------------------------------------------ 78 (180)
T 1ej0_A 62 ---------------VGVDFLQGDFRDELVMK------------------------------------------------ 78 (180)
T ss_dssp ---------------TTEEEEESCTTSHHHHH------------------------------------------------
T ss_pred ---------------CcEEEEEcccccchhhh------------------------------------------------
Confidence 23555556655432100
Q ss_pred CchhhhhhcccccCCCCccEEEEeccccccCCH-----------HHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHH
Q 024311 172 GSRAWERASEADQGEGGYDVILLTEIPYSVTSL-----------KKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHL 240 (269)
Q Consensus 172 gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~-----------~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F 240 (269)
.. .......+||+|++..+++..... ..+++.+.++|+ |+|.+++.... ......+
T Consensus 79 ------~~-~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~-----~~~~~~~ 145 (180)
T 1ej0_A 79 ------AL-LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLA-PGGSFVVKVFQ-----GEGFDEY 145 (180)
T ss_dssp ------HH-HHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEEES-----STTHHHH
T ss_pred ------hh-hccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcC-CCcEEEEEEec-----CCcHHHH
Confidence 00 000134589999997777665554 688899999998 89998886533 2346677
Q ss_pred HHHhhhcCceeEEE
Q 024311 241 RSLVDEEGIFGAHL 254 (269)
Q Consensus 241 ~~~~~~~g~~~~~~ 254 (269)
.+.+++. +-..++
T Consensus 146 ~~~~~~~-~~~~~~ 158 (180)
T 1ej0_A 146 LREIRSL-FTKVKV 158 (180)
T ss_dssp HHHHHHH-EEEEEE
T ss_pred HHHHHHh-hhhEEe
Confidence 7777764 433343
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-09 Score=100.93 Aligned_cols=46 Identities=30% Similarity=0.271 Sum_probs=38.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
++.+|||||||+|..++.++..|+ +|++.|+++.+++. .+.|+..+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~-----a~~n~~~~ 198 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGW-----AKENQVLA 198 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHH-----HHHHHHHH
T ss_pred CCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHH-----HHHHHHHc
Confidence 567999999999999999999988 99999999999944 45555443
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-09 Score=91.56 Aligned_cols=63 Identities=16% Similarity=0.207 Sum_probs=51.2
Q ss_pred CCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEE
Q 024311 186 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAH 253 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~ 253 (269)
.++||+|+++.+++. .....+++.+.++|+ |+|++++......+ ....++.+.+++.||-..+
T Consensus 113 ~~~fD~v~~~~~l~~-~~~~~~l~~~~~~L~-~gG~l~i~~~~~~~---~~~~~~~~~l~~~Gf~~~~ 175 (215)
T 2zfu_A 113 DESVDVAVFCLSLMG-TNIRDFLEEANRVLK-PGGLLKVAEVSSRF---EDVRTFLRAVTKLGFKIVS 175 (215)
T ss_dssp TTCEEEEEEESCCCS-SCHHHHHHHHHHHEE-EEEEEEEEECGGGC---SCHHHHHHHHHHTTEEEEE
T ss_pred CCCEeEEEEehhccc-cCHHHHHHHHHHhCC-CCeEEEEEEcCCCC---CCHHHHHHHHHHCCCEEEE
Confidence 458999999999974 778899999999999 89999987654433 3678999999999975444
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.1e-09 Score=93.10 Aligned_cols=123 Identities=12% Similarity=0.108 Sum_probs=82.7
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
.-+|.+|||+|||+|..++.++..+ +.+|+++|+++..+ ...+.|+..+. +..++++
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al-----~~A~~N~~~~g-----------------l~~~I~~ 76 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPY-----QSALKNVSEHG-----------------LTSKIDV 76 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHH-----HHHHHHHHHTT-----------------CTTTEEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHH-----HHHHHHHHHcC-----------------CCCcEEE
Confidence 3467899999999999999999987 46899999999998 44556665431 2235676
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|+-+.. ....+||+
T Consensus 77 ~~gD~l~~~---------------------------------------------------------------~~~~~~D~ 93 (230)
T 3lec_A 77 RLANGLSAF---------------------------------------------------------------EEADNIDT 93 (230)
T ss_dssp EECSGGGGC---------------------------------------------------------------CGGGCCCE
T ss_pred EECchhhcc---------------------------------------------------------------ccccccCE
Confidence 666643310 01227999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCce
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~ 250 (269)
|+-+=.-- .....++......|+ ++|.+++.... +.....+.+.+.||.
T Consensus 94 IviaGmGg--~lI~~IL~~~~~~l~-~~~~lIlqp~~-------~~~~lr~~L~~~Gf~ 142 (230)
T 3lec_A 94 ITICGMGG--RLIADILNNDIDKLQ-HVKTLVLQPNN-------REDDLRKWLAANDFE 142 (230)
T ss_dssp EEEEEECH--HHHHHHHHHTGGGGT-TCCEEEEEESS-------CHHHHHHHHHHTTEE
T ss_pred EEEeCCch--HHHHHHHHHHHHHhC-cCCEEEEECCC-------ChHHHHHHHHHCCCE
Confidence 87443332 234445555555676 77776666532 477888889999974
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.1e-09 Score=94.13 Aligned_cols=134 Identities=16% Similarity=0.148 Sum_probs=89.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
++++|||+|||+|..++.++.. + ..+|+++|+++++++. .+.|+..+ ....++++.
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~-----a~~~~~~~-----------------g~~~~v~~~ 120 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQV-----ARENLQLA-----------------GVDQRVTLR 120 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHH-----HHHHHHHT-----------------TCTTTEEEE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHc-----------------CCCCcEEEE
Confidence 5789999999999999887765 2 3599999999999843 44555332 022356776
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.. + .....++||+|
T Consensus 121 ~~d~~~~l--~----------------------------------------------------------~~~~~~~fD~V 140 (248)
T 3tfw_A 121 EGPALQSL--E----------------------------------------------------------SLGECPAFDLI 140 (248)
T ss_dssp ESCHHHHH--H----------------------------------------------------------TCCSCCCCSEE
T ss_pred EcCHHHHH--H----------------------------------------------------------hcCCCCCeEEE
Confidence 66643210 0 00123589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccccc----------CcchHHHHHHhhhcCceeEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------NNAARHLRSLVDEEGIFGAHLI 255 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~----------~~~~~~F~~~~~~~g~~~~~~~ 255 (269)
+. |. .....+.+++.+.++|+ |+|++++..-. +.|. ...+.+|.+.+.+..-+...++
T Consensus 141 ~~-d~--~~~~~~~~l~~~~~~Lk-pGG~lv~~~~~-~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (248)
T 3tfw_A 141 FI-DA--DKPNNPHYLRWALRYSR-PGTLIIGDNVV-RDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATAL 208 (248)
T ss_dssp EE-CS--CGGGHHHHHHHHHHTCC-TTCEEEEECCS-GGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred EE-CC--chHHHHHHHHHHHHhcC-CCeEEEEeCCC-cCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEe
Confidence 97 43 35567788999999998 89988765332 2111 1246789999888765665554
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-09 Score=90.97 Aligned_cols=39 Identities=18% Similarity=0.038 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.++.+|||+|||+|..++.++..+. +|+++|+++.+++.
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~~~-~v~~vD~~~~~~~~ 114 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHLVQ-HVCSVERIKGLQWQ 114 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEecCHHHHHH
Confidence 4688999999999999988888765 99999999999843
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-09 Score=95.00 Aligned_cols=100 Identities=23% Similarity=0.288 Sum_probs=72.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+.+|||+|||+|..+..++..+. +|+++|+++.+++.+ +.+.. .+ +..+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a-----~~~~~----------------------~~--~~~~ 103 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVA-----REKGV----------------------KN--VVEA 103 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHH-----HHHTC----------------------SC--EEEC
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHH-----HhhcC----------------------CC--EEEC
Confidence 678999999999999998888876 899999999988432 22210 01 2223
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|....+ ...++||+|++
T Consensus 104 d~~~~~---------------------------------------------------------------~~~~~fD~v~~ 120 (260)
T 2avn_A 104 KAEDLP---------------------------------------------------------------FPSGAFEAVLA 120 (260)
T ss_dssp CTTSCC---------------------------------------------------------------SCTTCEEEEEE
T ss_pred cHHHCC---------------------------------------------------------------CCCCCEEEEEE
Confidence 322211 13458999999
Q ss_pred ecccccc-CCHHHHHHHHHHhcCCCCeEEEEEEcc
Q 024311 195 TEIPYSV-TSLKKLYLLIKKCLRPPYGVVYLATKK 228 (269)
Q Consensus 195 sD~iY~~-~~~~~L~~~l~~~L~~p~g~~~va~k~ 228 (269)
..++++. .....+++.+.++|+ |+|++++....
T Consensus 121 ~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~ 154 (260)
T 2avn_A 121 LGDVLSYVENKDKAFSEIRRVLV-PDGLLIATVDN 154 (260)
T ss_dssp CSSHHHHCSCHHHHHHHHHHHEE-EEEEEEEEEEB
T ss_pred cchhhhccccHHHHHHHHHHHcC-CCeEEEEEeCC
Confidence 8866543 668899999999999 89999887644
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.1e-09 Score=89.83 Aligned_cols=123 Identities=20% Similarity=0.194 Sum_probs=82.7
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
..+.+|||+|||+|..++.++.. ..+|+++|.++++++. .+.|...+. +.+++++..
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~-----a~~~~~~~~-----------------~~~~~~~~~ 146 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKT-----AQKNLKKFN-----------------LGKNVKFFN 146 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHH-----HHHHHHHTT-----------------CCTTEEEEC
T ss_pred CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHH-----HHHHHHHcC-----------------CCCcEEEEE
Confidence 36789999999999999888877 4599999999999843 444443220 123455544
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
.|+.+.. ....+||+|+
T Consensus 147 ~d~~~~~---------------------------------------------------------------~~~~~~D~v~ 163 (248)
T 2yvl_A 147 VDFKDAE---------------------------------------------------------------VPEGIFHAAF 163 (248)
T ss_dssp SCTTTSC---------------------------------------------------------------CCTTCBSEEE
T ss_pred cChhhcc---------------------------------------------------------------cCCCcccEEE
Confidence 4433210 0234799999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEE
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
. ++.....+++.+.++|+ |+|++++..... ....++.+.+++. +...++
T Consensus 164 ~-----~~~~~~~~l~~~~~~L~-~gG~l~~~~~~~-----~~~~~~~~~l~~~-f~~~~~ 212 (248)
T 2yvl_A 164 V-----DVREPWHYLEKVHKSLM-EGAPVGFLLPTA-----NQVIKLLESIENY-FGNLEV 212 (248)
T ss_dssp E-----CSSCGGGGHHHHHHHBC-TTCEEEEEESSH-----HHHHHHHHHSTTT-EEEEEE
T ss_pred E-----CCcCHHHHHHHHHHHcC-CCCEEEEEeCCH-----HHHHHHHHHHHhh-CCcceE
Confidence 7 23355567888888998 899998887643 2356777777766 544443
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1e-08 Score=94.25 Aligned_cols=131 Identities=18% Similarity=0.144 Sum_probs=89.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
++.+|||+|||+|..++.++... ..+++++|+ +.+++ ..+.|+..+ .+..++++..
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~-----~a~~~~~~~-----------------~~~~~v~~~~ 238 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAE-----RARRRFADA-----------------GLADRVTVAE 238 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHH-----HHHHHHHHT-----------------TCTTTEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHH-----HHHHHHHhc-----------------CCCCceEEEe
Confidence 57899999999999998877654 348999999 99884 344444321 0223566666
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+. .+..||+|+
T Consensus 239 ~d~~~~-----------------------------------------------------------------~~~~~D~v~ 253 (374)
T 1qzz_A 239 GDFFKP-----------------------------------------------------------------LPVTADVVL 253 (374)
T ss_dssp CCTTSC-----------------------------------------------------------------CSCCEEEEE
T ss_pred CCCCCc-----------------------------------------------------------------CCCCCCEEE
Confidence 654320 112499999
Q ss_pred EeccccccCCHH--HHHHHHHHhcCCCCeEEEEEEc--ccc------------------c-ccCcchHHHHHHhhhcCce
Q 024311 194 LTEIPYSVTSLK--KLYLLIKKCLRPPYGVVYLATK--KNY------------------V-GFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 194 asD~iY~~~~~~--~L~~~l~~~L~~p~g~~~va~k--~~~------------------f-g~~~~~~~F~~~~~~~g~~ 250 (269)
++.++++..... .+++.+.++|+ |+|+++|... ... . |...+..++.+.+++.||-
T Consensus 254 ~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 332 (374)
T 1qzz_A 254 LSFVLLNWSDEDALTILRGCVRALE-PGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLA 332 (374)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEE
T ss_pred EeccccCCCHHHHHHHHHHHHHhcC-CCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCc
Confidence 999998766553 78999999998 8998887654 110 0 1112577888999999975
Q ss_pred eEEE
Q 024311 251 GAHL 254 (269)
Q Consensus 251 ~~~~ 254 (269)
..++
T Consensus 333 ~~~~ 336 (374)
T 1qzz_A 333 LASE 336 (374)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 4444
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.04 E-value=7.9e-10 Score=103.41 Aligned_cols=124 Identities=19% Similarity=0.202 Sum_probs=83.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+++|||+|||+|..++.++..|+++|+++|+++.+++ ..+.|+..|. +..+++++.+
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~-----~a~~n~~~n~-----------------~~~~v~~~~~ 274 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIE-----TAKENAKLNG-----------------VEDRMKFIVG 274 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHH-----HHHHHHHHTT-----------------CGGGEEEEES
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHH-----HHHHHHHHcC-----------------CCccceEEEC
Confidence 67899999999999999999888889999999999984 4455554431 1125667666
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|..+.... + .....+||+|+.
T Consensus 275 d~~~~~~~-----------------------------------------------------~------~~~~~~fD~Vi~ 295 (396)
T 2as0_A 275 SAFEEMEK-----------------------------------------------------L------QKKGEKFDIVVL 295 (396)
T ss_dssp CHHHHHHH-----------------------------------------------------H------HHTTCCEEEEEE
T ss_pred CHHHHHHH-----------------------------------------------------H------HhhCCCCCEEEE
Confidence 64432100 0 012458999997
Q ss_pred ecccccc----------CCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhh
Q 024311 195 TEIPYSV----------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVD 245 (269)
Q Consensus 195 sD~iY~~----------~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~ 245 (269)
|..|.. ..+..++..+.++|+ |+|++++++....+ ....|.+.++
T Consensus 296 -dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lv~~~~~~~~----~~~~~~~~v~ 350 (396)
T 2as0_A 296 -DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVK-DGGILVTCSCSQHV----DLQMFKDMII 350 (396)
T ss_dssp -CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEE-EEEEEEEEECCTTS----CHHHHHHHHH
T ss_pred -CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEECCCCC----CHHHHHHHHH
Confidence 665543 335567777777888 89988887765543 2344554443
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.5e-09 Score=95.26 Aligned_cols=123 Identities=12% Similarity=0.038 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.++.+|||+|||+|..++.++.. ++.+|++.|.++.+++ .++.|+..|. + .++.++
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~-----~a~~n~~~n~-----------------l-~~~~~~ 174 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYH-----YLCENIKLNK-----------------L-NNVIPI 174 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHH-----HHHHHHHHTT-----------------C-SSEEEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHH-----HHHHHHHHcC-----------------C-CCEEEE
Confidence 46789999999999999998876 4569999999999984 4455554431 1 235555
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.+ ...+||+|
T Consensus 175 ~~d~~~~~----------------------------------------------------------------~~~~~D~V 190 (272)
T 3a27_A 175 LADNRDVE----------------------------------------------------------------LKDVADRV 190 (272)
T ss_dssp ESCGGGCC----------------------------------------------------------------CTTCEEEE
T ss_pred ECChHHcC----------------------------------------------------------------ccCCceEE
Confidence 55433210 13479999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcC
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEG 248 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g 248 (269)
+. |..+ ....++..+.+.|+ |+|++++.+....-...+...+.++.+++..
T Consensus 191 i~-d~p~---~~~~~l~~~~~~Lk-pgG~l~~s~~~~~~~~~~~~~~~~~~~~~~~ 241 (272)
T 3a27_A 191 IM-GYVH---KTHKFLDKTFEFLK-DRGVIHYHETVAEKIMYERPIERLKFYAEKN 241 (272)
T ss_dssp EE-CCCS---SGGGGHHHHHHHEE-EEEEEEEEEEEEGGGTTTHHHHHHHHHHHHT
T ss_pred EE-CCcc---cHHHHHHHHHHHcC-CCCEEEEEEcCccccccccHHHHHHHHHHHh
Confidence 87 4444 55667777778898 8999998765542111233445556666543
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-08 Score=92.56 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=89.2
Q ss_pred CCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 36 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
+.+|||+|||+|..++.++.. +..+++++|+ +.+++. .+.|+.... ...++++..+
T Consensus 168 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-----a~~~~~~~~-----------------~~~~v~~~~~ 224 (334)
T 2ip2_A 168 GRSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGV-----ARDNLSSLL-----------------AGERVSLVGG 224 (334)
T ss_dssp TCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHH-----HHHHTHHHH-----------------HTTSEEEEES
T ss_pred CCEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHH-----HHHHHhhcC-----------------CCCcEEEecC
Confidence 389999999999988777664 3348999999 888843 333332210 1235666655
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|..+ + .+.+||+|++
T Consensus 225 d~~~-~----------------------------------------------------------------~~~~~D~v~~ 239 (334)
T 2ip2_A 225 DMLQ-E----------------------------------------------------------------VPSNGDIYLL 239 (334)
T ss_dssp CTTT-C----------------------------------------------------------------CCSSCSEEEE
T ss_pred CCCC-C----------------------------------------------------------------CCCCCCEEEE
Confidence 5432 0 1247999999
Q ss_pred eccccccCCH--HHHHHHHHHhcCCCCeEEEEEEcccc-------------------cccCcchHHHHHHhhhcCceeEE
Q 024311 195 TEIPYSVTSL--KKLYLLIKKCLRPPYGVVYLATKKNY-------------------VGFNNAARHLRSLVDEEGIFGAH 253 (269)
Q Consensus 195 sD~iY~~~~~--~~L~~~l~~~L~~p~g~~~va~k~~~-------------------fg~~~~~~~F~~~~~~~g~~~~~ 253 (269)
..++++.... ..+++.+.+.|+ |+|+++|...... -|...+..++.+.+++.||-..+
T Consensus 240 ~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~ 318 (334)
T 2ip2_A 240 SRIIGDLDEAASLRLLGNCREAMA-GDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVER 318 (334)
T ss_dssp ESCGGGCCHHHHHHHHHHHHHHSC-TTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEE
T ss_pred chhccCCCHHHHHHHHHHHHHhcC-CCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeE
Confidence 9999865444 489999999998 8999888732110 01223578899999999985555
Q ss_pred EE
Q 024311 254 LI 255 (269)
Q Consensus 254 ~~ 255 (269)
+.
T Consensus 319 ~~ 320 (334)
T 2ip2_A 319 IV 320 (334)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.7e-09 Score=90.12 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=52.7
Q ss_pred CCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccc----------------cc--cCcchHHHHHHhhhc
Q 024311 186 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY----------------VG--FNNAARHLRSLVDEE 247 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~----------------fg--~~~~~~~F~~~~~~~ 247 (269)
.++||+|++..++++......+++.+.++|+ |+|.+++...... +. ..-+..++.+.+++.
T Consensus 100 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 178 (219)
T 1vlm_A 100 DESFDFALMVTTICFVDDPERALKEAYRILK-KGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKA 178 (219)
T ss_dssp TTCEEEEEEESCGGGSSCHHHHHHHHHHHEE-EEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHT
T ss_pred CCCeeEEEEcchHhhccCHHHHHHHHHHHcC-CCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHC
Confidence 4589999999999999999999999999999 8999988743210 00 012568889999999
Q ss_pred CceeEEEE
Q 024311 248 GIFGAHLI 255 (269)
Q Consensus 248 g~~~~~~~ 255 (269)
||-..++.
T Consensus 179 Gf~~~~~~ 186 (219)
T 1vlm_A 179 GFEEFKVV 186 (219)
T ss_dssp TCEEEEEE
T ss_pred CCeEEEEe
Confidence 98555543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-08 Score=92.62 Aligned_cols=132 Identities=13% Similarity=0.044 Sum_probs=91.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
...+|||+|||+|...+.++.. +..++++.|+ +.+++ ..+.++... .+..+++|..
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-----~a~~~~~~~-----------------~~~~~v~~~~ 225 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPAS-----AAHRRFLDT-----------------GLSGRAQVVV 225 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHH-----HHHHHHHHT-----------------TCTTTEEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHH-----HHHHhhhhc-----------------CcCcCeEEec
Confidence 4579999999999988776654 3458999999 98884 344444321 1224577766
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+ + .+.+||+|+
T Consensus 226 ~d~~~-~----------------------------------------------------------------~p~~~D~v~ 240 (332)
T 3i53_A 226 GSFFD-P----------------------------------------------------------------LPAGAGGYV 240 (332)
T ss_dssp CCTTS-C----------------------------------------------------------------CCCSCSEEE
T ss_pred CCCCC-C----------------------------------------------------------------CCCCCcEEE
Confidence 65431 0 112899999
Q ss_pred EeccccccCC--HHHHHHHHHHhcCCCCeEEEEEEcccc----------------cccCcchHHHHHHhhhcCceeEEEE
Q 024311 194 LTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKNY----------------VGFNNAARHLRSLVDEEGIFGAHLI 255 (269)
Q Consensus 194 asD~iY~~~~--~~~L~~~l~~~L~~p~g~~~va~k~~~----------------fg~~~~~~~F~~~~~~~g~~~~~~~ 255 (269)
+..++++... ...+++.+++.|+ |+|+++|...... .|...+..++.+.+++.||-..++.
T Consensus 241 ~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~ 319 (332)
T 3i53_A 241 LSAVLHDWDDLSAVAILRRCAEAAG-SGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAH 319 (332)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHHT-TTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred EehhhccCCHHHHHHHHHHHHHhcC-CCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 9999987766 4789999999998 8999988643110 1112357889999999998655553
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.3e-09 Score=92.99 Aligned_cols=49 Identities=8% Similarity=0.116 Sum_probs=39.9
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
.-+|.+|||+|||+|..++.++..+ +.+|+++|+++..++ ..+.|+..+
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~-----~A~~N~~~~ 68 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQ-----SAQKQVRSS 68 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHH-----HHHHHHHHT
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHH-----HHHHHHHHc
Confidence 3467899999999999999999987 458999999999984 455565443
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-08 Score=91.65 Aligned_cols=132 Identities=13% Similarity=0.115 Sum_probs=92.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||+|||+|...+.++... ..+++++|+ +.+++ ..+.++... .+..+++|..
T Consensus 202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-----~a~~~~~~~-----------------~l~~~v~~~~ 258 (369)
T 3gwz_A 202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAE-----EARELLTGR-----------------GLADRCEILP 258 (369)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHH-----HHHHHHHHT-----------------TCTTTEEEEE
T ss_pred cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHH-----HHHHhhhhc-----------------CcCCceEEec
Confidence 56899999999999998777653 348999999 98884 444444321 1224567766
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+ + .+.+||+|+
T Consensus 259 ~d~~~-~----------------------------------------------------------------~p~~~D~v~ 273 (369)
T 3gwz_A 259 GDFFE-T----------------------------------------------------------------IPDGADVYL 273 (369)
T ss_dssp CCTTT-C----------------------------------------------------------------CCSSCSEEE
T ss_pred cCCCC-C----------------------------------------------------------------CCCCceEEE
Confidence 65441 0 112799999
Q ss_pred EeccccccCCHH--HHHHHHHHhcCCCCeEEEEEEccccc------------------ccCcchHHHHHHhhhcCceeEE
Q 024311 194 LTEIPYSVTSLK--KLYLLIKKCLRPPYGVVYLATKKNYV------------------GFNNAARHLRSLVDEEGIFGAH 253 (269)
Q Consensus 194 asD~iY~~~~~~--~L~~~l~~~L~~p~g~~~va~k~~~f------------------g~~~~~~~F~~~~~~~g~~~~~ 253 (269)
++.++++..... .+++.+++.|+ |+|+++|......- |...+..+|.+.+++.||-..+
T Consensus 274 ~~~vlh~~~d~~~~~~L~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~ 352 (369)
T 3gwz_A 274 IKHVLHDWDDDDVVRILRRIATAMK-PDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVER 352 (369)
T ss_dssp EESCGGGSCHHHHHHHHHHHHTTCC-TTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEE
T ss_pred hhhhhccCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEE
Confidence 999998877655 68999999998 89999886322100 1123568899999999986555
Q ss_pred EE
Q 024311 254 LI 255 (269)
Q Consensus 254 ~~ 255 (269)
+.
T Consensus 353 ~~ 354 (369)
T 3gwz_A 353 SL 354 (369)
T ss_dssp EE
T ss_pred EE
Confidence 53
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.01 E-value=6.8e-09 Score=87.33 Aligned_cols=60 Identities=22% Similarity=0.198 Sum_probs=44.6
Q ss_pred eccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 13 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 13 W~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
|.....+++.+....... ...++.+|||+|||+|..++.++..|+.+|++.|+++.+++.
T Consensus 28 ~~~~~~~~~~l~~~~~~~-~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~ 87 (207)
T 1wy7_A 28 YRTPGNAASELLWLAYSL-GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDV 87 (207)
T ss_dssp CCCCHHHHHHHHHHHHHT-TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred ecCchHHHHHHHHHHHHc-CCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 445555555555433211 234788999999999999999998887789999999999843
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=4.9e-09 Score=94.34 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=40.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
.|.+|||+|||+|..++.+|+.|+.+|++.|.||..+ ..++.|+..|
T Consensus 125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~-----~~~~~N~~~N 171 (278)
T 3k6r_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTF-----KFLVENIHLN 171 (278)
T ss_dssp TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHH-----HHHHHHHHHT
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHH-----HHHHHHHHHc
Confidence 6889999999999999999999988999999999998 4455566554
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.9e-09 Score=91.91 Aligned_cols=125 Identities=14% Similarity=0.104 Sum_probs=81.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||||||+|..++.+|...+ .+|++.|.++.++.. .+.|+..+. ..+++++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~-----a~~~~~~~~------------------l~nv~~~~ 90 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGA-----CLASAHEEG------------------LSNLRVMC 90 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHH-----HHHHHHHTT------------------CSSEEEEC
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHH-----HHHHHHHhC------------------CCcEEEEE
Confidence 577999999999999988776543 489999999999843 444443220 13567766
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+.. .. ....+.||.|+
T Consensus 91 ~Da~~~l--------------------------------------------------------~~----~~~~~~~d~v~ 110 (218)
T 3dxy_A 91 HDAVEVL--------------------------------------------------------HK----MIPDNSLRMVQ 110 (218)
T ss_dssp SCHHHHH--------------------------------------------------------HH----HSCTTCEEEEE
T ss_pred CCHHHHH--------------------------------------------------------HH----HcCCCChheEE
Confidence 6533210 00 01345899999
Q ss_pred Ee--ccccccCCH------HHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcC
Q 024311 194 LT--EIPYSVTSL------KKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEG 248 (269)
Q Consensus 194 as--D~iY~~~~~------~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g 248 (269)
.. |..+..... +.+++.+.++|+ |+|++++++....+ .....+.++..+
T Consensus 111 ~~~~~p~~~~~~~~rr~~~~~~l~~~~r~Lk-pGG~l~i~td~~~~-----~~~~~~~~~~~~ 167 (218)
T 3dxy_A 111 LFFPDPWHKARHNKRRIVQVPFAELVKSKLQ-LGGVFHMATDWEPY-----AEHMLEVMSSID 167 (218)
T ss_dssp EESCCCCCSGGGGGGSSCSHHHHHHHHHHEE-EEEEEEEEESCHHH-----HHHHHHHHHTST
T ss_pred EeCCCCccchhhhhhhhhhHHHHHHHHHHcC-CCcEEEEEeCCHHH-----HHHHHHHHHhCC
Confidence 86 544333332 359999999999 99999999864322 334555555443
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.7e-09 Score=96.03 Aligned_cols=119 Identities=16% Similarity=0.121 Sum_probs=78.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||+|||+|.....++..+..+|+++|+++.+++.+ +.+...... +. ......++++..+
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a-----~~~~~~~~~---~~--------~~~~~~~~~~~~~ 97 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQC-----QQRYEDMKN---RR--------DSEYIFSAEFITA 97 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHH-----HHHHHHHHS---SS--------CC-CCCEEEEEEC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHH-----HHHHHHhhh---cc--------cccccceEEEEEe
Confidence 5779999999999988777766666999999999998543 333322100 00 0001235677777
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|....+... .+ ....++||+|++
T Consensus 98 D~~~~~~~~---------------------------------------------~~------------~~~~~~fD~V~~ 120 (313)
T 3bgv_A 98 DSSKELLID---------------------------------------------KF------------RDPQMCFDICSC 120 (313)
T ss_dssp CTTTSCSTT---------------------------------------------TC------------SSTTCCEEEEEE
T ss_pred cccccchhh---------------------------------------------hc------------ccCCCCEEEEEE
Confidence 766532000 00 012358999999
Q ss_pred ecccccc-C---CHHHHHHHHHHhcCCCCeEEEEEEc
Q 024311 195 TEIPYSV-T---SLKKLYLLIKKCLRPPYGVVYLATK 227 (269)
Q Consensus 195 sD~iY~~-~---~~~~L~~~l~~~L~~p~g~~~va~k 227 (269)
+.++++. . ....+++.+.++|+ |+|++++++.
T Consensus 121 ~~~l~~~~~~~~~~~~~l~~~~~~Lk-pgG~li~~~~ 156 (313)
T 3bgv_A 121 QFVCHYSFESYEQADMMLRNACERLS-PGGYFIGTTP 156 (313)
T ss_dssp ETCGGGGGGSHHHHHHHHHHHHTTEE-EEEEEEEEEE
T ss_pred ecchhhccCCHHHHHHHHHHHHHHhC-CCcEEEEecC
Confidence 9999765 3 34678888888998 8999988754
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-09 Score=96.22 Aligned_cols=149 Identities=14% Similarity=0.191 Sum_probs=92.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHH-hhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQ-ARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
++++|||||||+|.....++.. +..+|++.|+++.+++.+ +.|+.. +.. . ..+++++.
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a-----~~~~~~~~~~-~--------------~~~~v~~~ 154 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQS-----KQHFPQISRS-L--------------ADPRATVR 154 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHH-----HHHCHHHHGG-G--------------GCTTEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHH-----HHHhHHhhcc-c--------------CCCcEEEE
Confidence 5689999999999999888766 346999999999999654 223211 100 0 12356665
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|...... ....++||+|
T Consensus 155 ~~D~~~~~~-------------------------------------------------------------~~~~~~fDvI 173 (304)
T 3bwc_A 155 VGDGLAFVR-------------------------------------------------------------QTPDNTYDVV 173 (304)
T ss_dssp ESCHHHHHH-------------------------------------------------------------SSCTTCEEEE
T ss_pred ECcHHHHHH-------------------------------------------------------------hccCCceeEE
Confidence 555332110 0024589999
Q ss_pred EEecccccc-CCH----HHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEEEee-ec--CcceE
Q 024311 193 LLTEIPYSV-TSL----KKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKE-MT--DRDIW 264 (269)
Q Consensus 193 lasD~iY~~-~~~----~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~~~~-~~--~~~i~ 264 (269)
++ |..+.. ... ..+++.++++|+ |+|++++.....++ .......+.+.+++.||-.+++... .. ..+.|
T Consensus 174 i~-d~~~~~~~~~~l~~~~~l~~~~~~Lk-pgG~lv~~~~~~~~-~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w 250 (304)
T 3bwc_A 174 II-DTTDPAGPASKLFGEAFYKDVLRILK-PDGICCNQGESIWL-DLELIEKMSRFIRETGFASVQYALMHVPTYPCGSI 250 (304)
T ss_dssp EE-ECC---------CCHHHHHHHHHHEE-EEEEEEEEECCTTT-CHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCC
T ss_pred EE-CCCCccccchhhhHHHHHHHHHHhcC-CCcEEEEecCCccc-chHHHHHHHHHHHhCCCCcEEEEEeecccccCcce
Confidence 98 443321 111 578899999999 89998887654332 1235678888999999855554332 12 24667
Q ss_pred EEE
Q 024311 265 KFF 267 (269)
Q Consensus 265 ~~~ 267 (269)
.|.
T Consensus 251 ~f~ 253 (304)
T 3bwc_A 251 GTL 253 (304)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.99 E-value=9.3e-10 Score=106.03 Aligned_cols=38 Identities=32% Similarity=0.572 Sum_probs=34.0
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
.++++|||+|||+|.+++.++..++.+|+++|.++ +++
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~ 194 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQ 194 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHH
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHH
Confidence 47889999999999999999988888999999987 763
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-08 Score=92.63 Aligned_cols=131 Identities=15% Similarity=0.098 Sum_probs=91.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||+|||+|..+..++... ..+|+++|+ +.+++ ..+.|+... ....++++..
T Consensus 190 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-----~a~~~~~~~-----------------~~~~~v~~~~ 246 (359)
T 1x19_A 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAID-----LVNENAAEK-----------------GVADRMRGIA 246 (359)
T ss_dssp TCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHH-----HHHHHHHHT-----------------TCTTTEEEEE
T ss_pred CCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHH-----HHHHHHHhc-----------------CCCCCEEEEe
Confidence 57899999999999998777653 348999999 98884 344444321 0123466766
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+.+ ...+|+|+
T Consensus 247 ~d~~~~~-----------------------------------------------------------------~~~~D~v~ 261 (359)
T 1x19_A 247 VDIYKES-----------------------------------------------------------------YPEADAVL 261 (359)
T ss_dssp CCTTTSC-----------------------------------------------------------------CCCCSEEE
T ss_pred CccccCC-----------------------------------------------------------------CCCCCEEE
Confidence 6644321 11349999
Q ss_pred EeccccccCC--HHHHHHHHHHhcCCCCeEEEEEEccc----------------ccccC------cchHHHHHHhhhcCc
Q 024311 194 LTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKN----------------YVGFN------NAARHLRSLVDEEGI 249 (269)
Q Consensus 194 asD~iY~~~~--~~~L~~~l~~~L~~p~g~~~va~k~~----------------~fg~~------~~~~~F~~~~~~~g~ 249 (269)
++.++++... ...+++.+.++|+ |+|+++|..... ..+.+ .+..++.+.+++.||
T Consensus 262 ~~~vlh~~~d~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf 340 (359)
T 1x19_A 262 FCRILYSANEQLSTIMCKKAFDAMR-SGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGY 340 (359)
T ss_dssp EESCGGGSCHHHHHHHHHHHHTTCC-TTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTC
T ss_pred EechhccCCHHHHHHHHHHHHHhcC-CCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCC
Confidence 9999987766 7788999999998 899987764111 01212 467899999999998
Q ss_pred eeEEE
Q 024311 250 FGAHL 254 (269)
Q Consensus 250 ~~~~~ 254 (269)
-..++
T Consensus 341 ~~v~~ 345 (359)
T 1x19_A 341 KDVTM 345 (359)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 55554
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-08 Score=93.67 Aligned_cols=125 Identities=14% Similarity=0.236 Sum_probs=84.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.++++|||+| |+|..++.++..++ .+|++.|+++.+++. .+.|+..+. +. +++++
T Consensus 171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~-----a~~~~~~~g-----------------~~-~v~~~ 226 (373)
T 2qm3_A 171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKF-----IEKAANEIG-----------------YE-DIEIF 226 (373)
T ss_dssp STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHH-----HHHHHHHHT-----------------CC-CEEEE
T ss_pred CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHH-----HHHHHHHcC-----------------CC-CEEEE
Confidence 4689999999 99999999988876 799999999999944 455554331 12 57777
Q ss_pred cCCCCC-cchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 113 AGDWEE-LPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 113 ~~dw~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
.+|... ++. ...++||+
T Consensus 227 ~~D~~~~l~~--------------------------------------------------------------~~~~~fD~ 244 (373)
T 2qm3_A 227 TFDLRKPLPD--------------------------------------------------------------YALHKFDT 244 (373)
T ss_dssp CCCTTSCCCT--------------------------------------------------------------TTSSCBSE
T ss_pred EChhhhhchh--------------------------------------------------------------hccCCccE
Confidence 777654 110 02347999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCe-EEEEEEcccccccCcch---HHHHHHhh-hcCce
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYG-VVYLATKKNYVGFNNAA---RHLRSLVD-EEGIF 250 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g-~~~va~k~~~fg~~~~~---~~F~~~~~-~~g~~ 250 (269)
|+. |..|.......+++.+.++|+ |+| ++++++... .++. ....+.++ +.|+-
T Consensus 245 Vi~-~~p~~~~~~~~~l~~~~~~Lk-pgG~~~~~~~~~~----~~~~~~~~~~~~~l~~~~g~~ 302 (373)
T 2qm3_A 245 FIT-DPPETLEAIRAFVGRGIATLK-GPRCAGYFGITRR----ESSLDKWREIQKLLLNEFNVV 302 (373)
T ss_dssp EEE-CCCSSHHHHHHHHHHHHHTBC-STTCEEEEEECTT----TCCHHHHHHHHHHHHHTSCCE
T ss_pred EEE-CCCCchHHHHHHHHHHHHHcc-cCCeEEEEEEecC----cCCHHHHHHHHHHHHHhcCcc
Confidence 997 666665446778888888998 888 546555331 1233 34445565 66753
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-09 Score=108.93 Aligned_cols=123 Identities=21% Similarity=0.260 Sum_probs=86.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCC-Ceeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLA-PSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~ 113 (269)
+|++|||||||||..++.++..|+.+|++.|+++.+++. .+.|+..|. +. .+++++.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~-----a~~N~~~ng-----------------l~~~~v~~i~ 596 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEW-----AERNLRLNG-----------------LTGRAHRLIQ 596 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHH-----HHHHHHHTT-----------------CCSTTEEEEE
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHH-----HHHHHHHcC-----------------CCccceEEEe
Confidence 688999999999999999999999889999999999944 455554431 11 2466655
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+. -. ....+||+|+
T Consensus 597 ~D~~~~---------------------------------------------------------l~-----~~~~~fD~Ii 614 (703)
T 3v97_A 597 ADCLAW---------------------------------------------------------LR-----EANEQFDLIF 614 (703)
T ss_dssp SCHHHH---------------------------------------------------------HH-----HCCCCEEEEE
T ss_pred cCHHHH---------------------------------------------------------HH-----hcCCCccEEE
Confidence 553321 00 1235899999
Q ss_pred Eecccccc------------CCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCc
Q 024311 194 LTEIPYSV------------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI 249 (269)
Q Consensus 194 asD~iY~~------------~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~ 249 (269)
. |..|.. ..+..++..+.++|+ |+|++++++..+.|... .+.+++.|+
T Consensus 615 ~-DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lk-pgG~L~~s~~~~~~~~~------~~~l~~~g~ 674 (703)
T 3v97_A 615 I-DPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLR-AGGTIMFSNNKRGFRMD------LDGLAKLGL 674 (703)
T ss_dssp E-CCCSBC-------CCBHHHHHHHHHHHHHHHEE-EEEEEEEEECCTTCCCC------HHHHHHTTE
T ss_pred E-CCccccCCccchhHHHHHHHHHHHHHHHHHhcC-CCcEEEEEECCcccccC------HHHHHHcCC
Confidence 7 554422 345667888888998 89999999888766432 344455564
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.8e-09 Score=90.21 Aligned_cols=132 Identities=17% Similarity=0.224 Sum_probs=86.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
++++|||+|||+|..++.++... ..+|++.|+++.+++. .+.|+... .+..+++++.
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~-----------------~~~~~v~~~~ 128 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQY-----AKQNLATY-----------------HFENQVRIIE 128 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHH-----HHHHHHHT-----------------TCTTTEEEEE
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHH-----HHHHHHHc-----------------CCCCcEEEEE
Confidence 57899999999999998888732 4599999999999843 44554332 0223567766
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+.. . ....++||+|+
T Consensus 129 ~d~~~~~--------------------------------------------------------~-----~~~~~~fD~V~ 147 (232)
T 3ntv_A 129 GNALEQF--------------------------------------------------------E-----NVNDKVYDMIF 147 (232)
T ss_dssp SCGGGCH--------------------------------------------------------H-----HHTTSCEEEEE
T ss_pred CCHHHHH--------------------------------------------------------H-----hhccCCccEEE
Confidence 6644310 0 00145899999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccccc---------------CcchHHHHHHhhhcCceeEEE
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF---------------NNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~---------------~~~~~~F~~~~~~~g~~~~~~ 254 (269)
.. .....++.+++.+.++|+ |+|++++.. ..+.|. ...+.+|.+.+.+..-+...+
T Consensus 148 ~~---~~~~~~~~~l~~~~~~Lk-pgG~lv~d~-~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 218 (232)
T 3ntv_A 148 ID---AAKAQSKKFFEIYTPLLK-HQGLVITDN-VLYHGFVSDIGIVRSRNVRQMVKKVQDYNEWLIKQPGYTTNF 218 (232)
T ss_dssp EE---TTSSSHHHHHHHHGGGEE-EEEEEEEEC-TTGGGGGGCGGGGGCHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred Ec---CcHHHHHHHHHHHHHhcC-CCeEEEEee-CCcCccccCcccccchhhhHHHHHHHHHHHHHhcCCCeEEEE
Confidence 63 346678889999999999 899887632 222221 013577888887665444443
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.1e-08 Score=85.77 Aligned_cols=108 Identities=21% Similarity=0.170 Sum_probs=72.7
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-CC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
..+.+|||+|||+|..++.++.. |+ .+|++.|.++.+++ .++.|... .+++++
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~-----~~~~~~~~--------------------~~~v~~ 126 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLR-----ELVPIVEE--------------------RRNIVP 126 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHH-----HHHHHHSS--------------------CTTEEE
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHH-----HHHHHHhc--------------------cCCCEE
Confidence 36789999999999999887754 43 58999999999884 33444321 035666
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|....... .....+||+
T Consensus 127 ~~~d~~~~~~~------------------------------------------------------------~~~~~~~D~ 146 (227)
T 1g8a_A 127 ILGDATKPEEY------------------------------------------------------------RALVPKVDV 146 (227)
T ss_dssp EECCTTCGGGG------------------------------------------------------------TTTCCCEEE
T ss_pred EEccCCCcchh------------------------------------------------------------hcccCCceE
Confidence 66654432100 012348999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccc
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN 229 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~ 229 (269)
|++ |.. .+.....++..+.++|+ |+|.+++..+..
T Consensus 147 v~~-~~~-~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~ 181 (227)
T 1g8a_A 147 IFE-DVA-QPTQAKILIDNAEVYLK-RGGYGMIAVKSR 181 (227)
T ss_dssp EEE-CCC-STTHHHHHHHHHHHHEE-EEEEEEEEEEGG
T ss_pred EEE-CCC-CHhHHHHHHHHHHHhcC-CCCEEEEEEecC
Confidence 996 554 34444466888999999 899988875543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-08 Score=92.23 Aligned_cols=131 Identities=16% Similarity=0.190 Sum_probs=90.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
++.+|||+|||+|..++.++..++ .+++++|+ +.+++ ..+.|+..+ ....++++..
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~-----~a~~~~~~~-----------------~~~~~v~~~~ 239 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVD-----TARSYLKDE-----------------GLSDRVDVVE 239 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHH-----HHHHHHHHT-----------------TCTTTEEEEE
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHH-----HHHHHHHhc-----------------CCCCceEEEe
Confidence 578999999999999987776543 48999999 88884 344454321 0123567766
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|+.+. .+.+||+|+
T Consensus 240 ~d~~~~-----------------------------------------------------------------~~~~~D~v~ 254 (360)
T 1tw3_A 240 GDFFEP-----------------------------------------------------------------LPRKADAII 254 (360)
T ss_dssp CCTTSC-----------------------------------------------------------------CSSCEEEEE
T ss_pred CCCCCC-----------------------------------------------------------------CCCCccEEE
Confidence 664421 112499999
Q ss_pred EeccccccCCH--HHHHHHHHHhcCCCCeEEEEEEcc-cc------c-------------ccCcchHHHHHHhhhcCcee
Q 024311 194 LTEIPYSVTSL--KKLYLLIKKCLRPPYGVVYLATKK-NY------V-------------GFNNAARHLRSLVDEEGIFG 251 (269)
Q Consensus 194 asD~iY~~~~~--~~L~~~l~~~L~~p~g~~~va~k~-~~------f-------------g~~~~~~~F~~~~~~~g~~~ 251 (269)
++.++++.... ..+++.+.++|+ |+|+++|.... .. + |...+..++.+.+++.||-.
T Consensus 255 ~~~vl~~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 333 (360)
T 1tw3_A 255 LSFVLLNWPDHDAVRILTRCAEALE-PGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVV 333 (360)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEE
T ss_pred EcccccCCCHHHHHHHHHHHHHhcC-CCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeE
Confidence 99999876544 478999999998 89998887432 10 0 11125678889999999755
Q ss_pred EEE
Q 024311 252 AHL 254 (269)
Q Consensus 252 ~~~ 254 (269)
.++
T Consensus 334 ~~~ 336 (360)
T 1tw3_A 334 EEV 336 (360)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-08 Score=94.69 Aligned_cols=134 Identities=10% Similarity=0.101 Sum_probs=89.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
..++|||+|||+|...+.++... ..+|++.|. +++++ ..+.++... ....++++..
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-----~a~~~~~~~-----------------~~~~~v~~~~ 235 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLE-----MMRKQTAGL-----------------SGSERIHGHG 235 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHH-----HHHHHHTTC-----------------TTGGGEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHH-----HHHHHHHhc-----------------CcccceEEEE
Confidence 56799999999999998777643 348999999 88883 344443211 0124567766
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..... + ..+.+||+|+
T Consensus 236 ~d~~~~~-------------------------------------------------~-------------~~p~~~D~v~ 253 (363)
T 3dp7_A 236 ANLLDRD-------------------------------------------------V-------------PFPTGFDAVW 253 (363)
T ss_dssp CCCCSSS-------------------------------------------------C-------------CCCCCCSEEE
T ss_pred ccccccC-------------------------------------------------C-------------CCCCCcCEEE
Confidence 6644310 0 0125899999
Q ss_pred EeccccccCC--HHHHHHHHHHhcCCCCeEEEEEEcccc----------------------c--ccCcchHHHHHHhhhc
Q 024311 194 LTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKNY----------------------V--GFNNAARHLRSLVDEE 247 (269)
Q Consensus 194 asD~iY~~~~--~~~L~~~l~~~L~~p~g~~~va~k~~~----------------------f--g~~~~~~~F~~~~~~~ 247 (269)
++.++++... ...+++.+++.|+ |+|+++|...... . +...+..++.+.+++.
T Consensus 254 ~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~A 332 (363)
T 3dp7_A 254 MSQFLDCFSEEEVISILTRVAQSIG-KDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENA 332 (363)
T ss_dssp EESCSTTSCHHHHHHHHHHHHHHCC-TTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTT
T ss_pred EechhhhCCHHHHHHHHHHHHHhcC-CCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHc
Confidence 9999986543 4578899999998 8999888532110 0 1112578899999999
Q ss_pred CceeEEE
Q 024311 248 GIFGAHL 254 (269)
Q Consensus 248 g~~~~~~ 254 (269)
||-..++
T Consensus 333 Gf~~v~~ 339 (363)
T 3dp7_A 333 GLEVEEI 339 (363)
T ss_dssp TEEESCC
T ss_pred CCeEEEE
Confidence 9754444
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.8e-09 Score=97.78 Aligned_cols=39 Identities=21% Similarity=0.383 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||||||+|..++.++..++ .+|+++|+++.+++.
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~ 235 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEA 235 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHH
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 356999999999999999888775 389999999999843
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.9e-09 Score=93.97 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=34.1
Q ss_pred CCCccEEEEecccc---ccCCHHHHHHHHHHhcCCCCeEEEEEEc
Q 024311 186 EGGYDVILLTEIPY---SVTSLKKLYLLIKKCLRPPYGVVYLATK 227 (269)
Q Consensus 186 ~~~fDlIlasD~iY---~~~~~~~L~~~l~~~L~~p~g~~~va~k 227 (269)
.++||+|++..+++ ++.....+++.+.++|+ |+|++++++.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lk-pGG~~i~~~~ 170 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTA-SGGKVLITTM 170 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcC-CCCEEEEEeC
Confidence 45899999998884 33567899999999999 9999988764
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.96 E-value=7.4e-09 Score=88.23 Aligned_cols=136 Identities=18% Similarity=0.165 Sum_probs=87.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
++++|||+|||+|..++.++.. + ..+|+++|+++++++ ..+.|+..+. ...++++.
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~-----~a~~~~~~~~-----------------~~~~v~~~ 121 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTA-----LAKEYWEKAG-----------------LSDKIGLR 121 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHH-----HHHHHHHHTT-----------------CTTTEEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHH-----HHHHHHHHCC-----------------CCCceEEE
Confidence 5779999999999999888765 2 459999999999984 3445553320 22356776
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+... . + ......++||+|
T Consensus 122 ~~d~~~~~~---~--------------------------------------------~----------~~~~~~~~fD~v 144 (225)
T 3tr6_A 122 LSPAKDTLA---E--------------------------------------------L----------IHAGQAWQYDLI 144 (225)
T ss_dssp ESCHHHHHH---H--------------------------------------------H----------HTTTCTTCEEEE
T ss_pred eCCHHHHHH---H--------------------------------------------h----------hhccCCCCccEE
Confidence 666432110 0 0 000122689999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccccc----------CcchHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------NNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~----------~~~~~~F~~~~~~~g~~~~~~ 254 (269)
+. |. ....+..+++.+.++|+ |+|++++..-. +.|. ...+.+|.+.+....-+...+
T Consensus 145 ~~-~~--~~~~~~~~l~~~~~~L~-pgG~lv~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 211 (225)
T 3tr6_A 145 YI-DA--DKANTDLYYEESLKLLR-EGGLIAVDNVL-RRGQVADEENQSENNQLIRLFNQKVYKDERVDMIL 211 (225)
T ss_dssp EE-CS--CGGGHHHHHHHHHHHEE-EEEEEEEECSS-GGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred EE-CC--CHHHHHHHHHHHHHhcC-CCcEEEEeCCC-cCCcccCccccChHHHHHHHHHHHHhcCCCeEEEE
Confidence 94 33 24567888999999999 89988875322 1121 014678888888765444444
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-08 Score=89.95 Aligned_cols=157 Identities=14% Similarity=0.129 Sum_probs=96.5
Q ss_pred CceeeccHH-HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CC-CeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 9 FLKCWESSI-DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 9 G~~vW~as~-~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
++++|+--. -||..|..-.. .-..-.|.+|||||||+|.....+|.. |. .+|++.|+++++++. ++.|...
T Consensus 51 e~r~w~p~rsklaa~i~~gl~-~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~-----l~~~a~~ 124 (233)
T 4df3_A 51 EYREWNAYRSKLAAALLKGLI-ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRD-----LLTVVRD 124 (233)
T ss_dssp EEEECCTTTCHHHHHHHTTCS-CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHH-----HHHHSTT
T ss_pred eeeeECCCchHHHHHHHhchh-hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHH-----HHHhhHh
Confidence 688998655 45555544321 112447899999999999988777753 43 589999999999843 3333210
Q ss_pred hhhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCccc
Q 024311 86 ARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSR 165 (269)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 165 (269)
.+++..+.+|-.....
T Consensus 125 --------------------~~ni~~V~~d~~~p~~-------------------------------------------- 140 (233)
T 4df3_A 125 --------------------RRNIFPILGDARFPEK-------------------------------------------- 140 (233)
T ss_dssp --------------------CTTEEEEESCTTCGGG--------------------------------------------
T ss_pred --------------------hcCeeEEEEeccCccc--------------------------------------------
Confidence 1234444333222110
Q ss_pred ccccccCchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccccc-Ccch---HHHH
Q 024311 166 RSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF-NNAA---RHLR 241 (269)
Q Consensus 166 ~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~-~~~~---~~F~ 241 (269)
.......+|+|+. |+ +.+...+.++..+++.|+ |+|+++|+.+.+-... .... .+=.
T Consensus 141 ----------------~~~~~~~vDvVf~-d~-~~~~~~~~~l~~~~r~LK-pGG~lvI~ik~r~~d~~~p~~~~~~~ev 201 (233)
T 4df3_A 141 ----------------YRHLVEGVDGLYA-DV-AQPEQAAIVVRNARFFLR-DGGYMLMAIKARSIDVTTEPSEVYKREI 201 (233)
T ss_dssp ----------------GTTTCCCEEEEEE-CC-CCTTHHHHHHHHHHHHEE-EEEEEEEEEECCHHHHHTCCCHHHHHHH
T ss_pred ----------------cccccceEEEEEE-ec-cCChhHHHHHHHHHHhcc-CCCEEEEEEecccCCCCCChHHHHHHHH
Confidence 0023458999985 65 456667788899999999 9999998865543211 1111 2335
Q ss_pred HHhhhcCceeEEE
Q 024311 242 SLVDEEGIFGAHL 254 (269)
Q Consensus 242 ~~~~~~g~~~~~~ 254 (269)
+.+++.||--.+.
T Consensus 202 ~~L~~~GF~l~e~ 214 (233)
T 4df3_A 202 KTLMDGGLEIKDV 214 (233)
T ss_dssp HHHHHTTCCEEEE
T ss_pred HHHHHCCCEEEEE
Confidence 5667789744443
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-08 Score=89.51 Aligned_cols=128 Identities=16% Similarity=0.165 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
..+.+|||+|||+|..++.++.. + ..+|++.|+++++++. .+.|+..+. . .+..++++
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~~---g------------~~~~~v~~ 157 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEH-----ARRNVSGCY---G------------QPPDNWRL 157 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHH-----HHHHHHHHH---T------------SCCTTEEE
T ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHH-----HHHHHHHhc---C------------CCCCcEEE
Confidence 46789999999999999887764 3 4599999999999844 344443210 0 00124555
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|..+.+ ....+||+
T Consensus 158 ~~~d~~~~~---------------------------------------------------------------~~~~~~D~ 174 (280)
T 1i9g_A 158 VVSDLADSE---------------------------------------------------------------LPDGSVDR 174 (280)
T ss_dssp ECSCGGGCC---------------------------------------------------------------CCTTCEEE
T ss_pred EECchHhcC---------------------------------------------------------------CCCCceeE
Confidence 544433210 12457999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhh-cCceeEEEE
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDE-EGIFGAHLI 255 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~-~g~~~~~~~ 255 (269)
|++ + ......+++.+.++|+ |+|++++..... ....++++.+++ .++...+++
T Consensus 175 v~~-~----~~~~~~~l~~~~~~L~-pgG~l~~~~~~~-----~~~~~~~~~l~~~~~f~~~~~~ 228 (280)
T 1i9g_A 175 AVL-D----MLAPWEVLDAVSRLLV-AGGVLMVYVATV-----TQLSRIVEALRAKQCWTEPRAW 228 (280)
T ss_dssp EEE-E----SSCGGGGHHHHHHHEE-EEEEEEEEESSH-----HHHHHHHHHHHHHSSBCCCEEE
T ss_pred EEE-C----CcCHHHHHHHHHHhCC-CCCEEEEEeCCH-----HHHHHHHHHHHhcCCcCCcEEE
Confidence 998 3 3345577888899998 899988876543 246677777777 566544443
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.8e-09 Score=99.34 Aligned_cols=46 Identities=24% Similarity=0.146 Sum_probs=38.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
.|++|||+|||+|..++.++..|+. |++.|+++.+++. .+.|+..|
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~-----a~~n~~~n 259 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGV-----LDQAALRL 259 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHH-----HHHHHHHH
T ss_pred CCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHH-----HHHHHHHh
Confidence 3899999999999999999999985 9999999999944 45555444
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-08 Score=95.29 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=52.4
Q ss_pred CCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcc-------cccc-------cCcchHHHHHHhhhcCcee
Q 024311 186 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKK-------NYVG-------FNNAARHLRSLVDEEGIFG 251 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~-------~~fg-------~~~~~~~F~~~~~~~g~~~ 251 (269)
.++||+|++..++++..+...+++.++++|+ |+|++++.... ..|. ..-+...+...+++.||-.
T Consensus 169 ~~~fD~I~~~~vl~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~ 247 (416)
T 4e2x_A 169 EGPANVIYAANTLCHIPYVQSVLEGVDALLA-PDGVFVFEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFEL 247 (416)
T ss_dssp HCCEEEEEEESCGGGCTTHHHHHHHHHHHEE-EEEEEEEEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEE
T ss_pred CCCEEEEEECChHHhcCCHHHHHHHHHHHcC-CCeEEEEEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEE
Confidence 4689999999999999999999999999999 89999987532 0010 0014578889999999754
Q ss_pred EEE
Q 024311 252 AHL 254 (269)
Q Consensus 252 ~~~ 254 (269)
.++
T Consensus 248 ~~~ 250 (416)
T 4e2x_A 248 VDV 250 (416)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.2e-08 Score=87.76 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=37.5
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIR 72 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~ 72 (269)
.++..|..... .-..-.|.+|||||||+|.....++.. + ..+|++.|+++.+++
T Consensus 60 kla~~ll~~l~-~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~ 115 (232)
T 3id6_C 60 KLAGAILKGLK-TNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVR 115 (232)
T ss_dssp HHHHHHHTTCS-CCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHH
T ss_pred HHHHHHHhhhh-hcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHH
Confidence 35555544321 112346889999999999888666643 3 358999999999873
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-08 Score=88.75 Aligned_cols=47 Identities=11% Similarity=0.151 Sum_probs=37.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
++.+|||+|||+|..++.++..++ .+|++.|+++.+++.+ ..|+..|
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a-~~~~~~~ 96 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYV-EDRIIAL 96 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHH-HHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHH-HHHHHHH
Confidence 678999999999999999888765 3899999999998543 2444433
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.4e-09 Score=98.81 Aligned_cols=122 Identities=21% Similarity=0.232 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.+.+|||+|||+|..++.++.. +.+|+++|.++.+++ ..+.|+..|. + .+++++.+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~-----~a~~n~~~n~-----------------~-~~~~~~~~ 264 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALR-----RAEENARLNG-----------------L-GNVRVLEA 264 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHH-----HHHHHHHHTT-----------------C-TTEEEEES
T ss_pred CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHH-----HHHHHHHHcC-----------------C-CCceEEEC
Confidence 6789999999999999998887 669999999999984 4455554431 1 13666666
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|..+... .+ .....+||+|+.
T Consensus 265 d~~~~~~-----------------------------------------------------~~------~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 265 NAFDLLR-----------------------------------------------------RL------EKEGERFDLVVL 285 (382)
T ss_dssp CHHHHHH-----------------------------------------------------HH------HHTTCCEEEEEE
T ss_pred CHHHHHH-----------------------------------------------------HH------HhcCCCeeEEEE
Confidence 5433110 00 012458999997
Q ss_pred ecccccc----------CCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhh
Q 024311 195 TEIPYSV----------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVD 245 (269)
Q Consensus 195 sD~iY~~----------~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~ 245 (269)
|..|.. ..+..++..+.++|+ |+|++++++....+ ....|.+.++
T Consensus 286 -dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~~~~----~~~~~~~~i~ 340 (382)
T 1wxx_A 286 -DPPAFAKGKKDVERAYRAYKEVNLRAIKLLK-EGGILATASCSHHM----TEPLFYAMVA 340 (382)
T ss_dssp -CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEE-EEEEEEEEECCTTS----CHHHHHHHHH
T ss_pred -CCCCCCCChhHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEECCCCC----CHHHHHHHHH
Confidence 766644 335567777888898 89999998776544 2344554443
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.1e-08 Score=84.15 Aligned_cols=40 Identities=25% Similarity=0.410 Sum_probs=35.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
..+.+|||+|||+|..++.++..|+.+|++.|+++.+++.
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~ 89 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIET 89 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHH
T ss_pred CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 4678999999999999999888887789999999998843
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-08 Score=86.72 Aligned_cols=128 Identities=14% Similarity=0.161 Sum_probs=81.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
++++|||+|||+|..++.++.. + ..+|+++|+++.+++. .+.|+..+. ...++++.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~~-----------------~~~~v~~~ 113 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEH-----ARRMLHDNG-----------------LIDRVELQ 113 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHH-----HHHHHHHHS-----------------GGGGEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHCC-----------------CCceEEEE
Confidence 5679999999999999887765 2 3489999999999854 344443220 11245555
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.. ....+ ||+|
T Consensus 114 ~~d~~~~~--------------------------------------------------------------~~~~~-fD~v 130 (210)
T 3c3p_A 114 VGDPLGIA--------------------------------------------------------------AGQRD-IDIL 130 (210)
T ss_dssp ESCHHHHH--------------------------------------------------------------TTCCS-EEEE
T ss_pred EecHHHHh--------------------------------------------------------------ccCCC-CCEE
Confidence 55432210 01234 9999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccc---------cCcchHHHHHHhhhcCceeE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG---------FNNAARHLRSLVDEEGIFGA 252 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg---------~~~~~~~F~~~~~~~g~~~~ 252 (269)
+.. ......+.+++.+.++|+ |+|++++..- .+.| ....+.+|.+.+.+..-+..
T Consensus 131 ~~~---~~~~~~~~~l~~~~~~Lk-pgG~lv~~~~-~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 194 (210)
T 3c3p_A 131 FMD---CDVFNGADVLERMNRCLA-KNALLIAVNA-LRRGSVAESHEDPETAALREFNHHLSRRRDFFT 194 (210)
T ss_dssp EEE---TTTSCHHHHHHHHGGGEE-EEEEEEEESS-SSCC------------CCCHHHHHHTTCTTEEE
T ss_pred EEc---CChhhhHHHHHHHHHhcC-CCeEEEEECc-cccCcccCcccchHHHHHHHHHHHHhhCCCeEE
Confidence 974 335678889999999999 8998887432 1111 11246778888876543333
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-08 Score=92.85 Aligned_cols=132 Identities=16% Similarity=0.176 Sum_probs=91.1
Q ss_pred CCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 36 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
+.+|||+|||+|.....++... ..++++.|+ +++++ ..+.+.... ....++++..+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~-----~a~~~~~~~-----------------~~~~~v~~~~~ 236 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRD-----AARKTIHAH-----------------DLGGRVEFFEK 236 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHH-----HHHHHHHHT-----------------TCGGGEEEEEC
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHH-----HHHHHHHhc-----------------CCCCceEEEeC
Confidence 7899999999999997777653 358999999 77773 344444321 01235777767
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|....+. ....+||+|++
T Consensus 237 d~~~~~~--------------------------------------------------------------~~~~~~D~v~~ 254 (352)
T 3mcz_A 237 NLLDARN--------------------------------------------------------------FEGGAADVVML 254 (352)
T ss_dssp CTTCGGG--------------------------------------------------------------GTTCCEEEEEE
T ss_pred CcccCcc--------------------------------------------------------------cCCCCccEEEE
Confidence 6554210 02346999999
Q ss_pred eccccccCC--HHHHHHHHHHhcCCCCeEEEEEEccc--------------------c-cccCcchHHHHHHhhhcCcee
Q 024311 195 TEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKN--------------------Y-VGFNNAARHLRSLVDEEGIFG 251 (269)
Q Consensus 195 sD~iY~~~~--~~~L~~~l~~~L~~p~g~~~va~k~~--------------------~-fg~~~~~~~F~~~~~~~g~~~ 251 (269)
+.++++... ...+++.+++.|+ |+|+++|..... . -|...+..++.+.+++.||-.
T Consensus 255 ~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 333 (352)
T 3mcz_A 255 NDCLHYFDAREAREVIGHAAGLVK-PGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAV 333 (352)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEE
T ss_pred ecccccCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCce
Confidence 999987654 4789999999998 899998864210 0 122235788999999999854
Q ss_pred EE
Q 024311 252 AH 253 (269)
Q Consensus 252 ~~ 253 (269)
.+
T Consensus 334 ~~ 335 (352)
T 3mcz_A 334 GE 335 (352)
T ss_dssp EE
T ss_pred ee
Confidence 44
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-08 Score=102.05 Aligned_cols=126 Identities=14% Similarity=0.106 Sum_probs=86.0
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCC--CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCC
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE 95 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga--~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~ 95 (269)
...+++..... ...+.+|||||||+|..++.++..++ .+|++.|+++.+++.+ +.++........
T Consensus 708 qRle~LLelL~----~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~A-----ReRLa~~lnAkr---- 774 (950)
T 3htx_A 708 QRVEYALKHIR----ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARA-----AKMLHVKLNKEA---- 774 (950)
T ss_dssp HHHHHHHHHHH----HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHH-----HHHHHHHTTTTC----
T ss_pred HHHHHHHHHhc----ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHH-----HHHhhhccchhh----
Confidence 34445544432 12688999999999999999998873 5899999999999553 222221100000
Q ss_pred CCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchh
Q 024311 96 SSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRA 175 (269)
Q Consensus 96 ~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~ 175 (269)
...++++|+.+|....+
T Consensus 775 --------~gl~nVefiqGDa~dLp------------------------------------------------------- 791 (950)
T 3htx_A 775 --------CNVKSATLYDGSILEFD------------------------------------------------------- 791 (950)
T ss_dssp --------SSCSEEEEEESCTTSCC-------------------------------------------------------
T ss_pred --------cCCCceEEEECchHhCC-------------------------------------------------------
Confidence 01246788777766532
Q ss_pred hhhhcccccCCCCccEEEEeccccccCCHH--HHHHHHHHhcCCCCeEEEEEEccc
Q 024311 176 WERASEADQGEGGYDVILLTEIPYSVTSLK--KLYLLIKKCLRPPYGVVYLATKKN 229 (269)
Q Consensus 176 W~~~~~~~~~~~~fDlIlasD~iY~~~~~~--~L~~~l~~~L~~p~g~~~va~k~~ 229 (269)
...++||+|++.+++.+..... .+++.+.++|+ |+ .++|.+..+
T Consensus 792 --------~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLK-PG-~LIISTPN~ 837 (950)
T 3htx_A 792 --------SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFH-PK-LLIVSTPNY 837 (950)
T ss_dssp --------TTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTC-CS-EEEEEECBG
T ss_pred --------cccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcC-CC-EEEEEecCc
Confidence 1345899999999999877644 48899999999 76 777776543
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.93 E-value=7.9e-09 Score=89.34 Aligned_cols=131 Identities=20% Similarity=0.175 Sum_probs=85.1
Q ss_pred CCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCC-Ceeeee
Q 024311 36 GKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLA-PSVHFY 112 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 112 (269)
+.+|||||||+|..++.++.. + ..+|++.|.++++++. .+.|+..+. .. .++++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~g-----------------~~~~~i~~~ 114 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQ-----AKALFREAG-----------------YSPSRVRFL 114 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHH-----HHHHHHHTT-----------------CCGGGEEEE
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHcC-----------------CCcCcEEEE
Confidence 449999999999999887763 2 3589999999999843 455554321 22 356666
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.. + ....++||+|
T Consensus 115 ~gda~~~l--------------------------------------------------~-----------~~~~~~fD~V 133 (221)
T 3dr5_A 115 LSRPLDVM--------------------------------------------------S-----------RLANDSYQLV 133 (221)
T ss_dssp CSCHHHHG--------------------------------------------------G-----------GSCTTCEEEE
T ss_pred EcCHHHHH--------------------------------------------------H-----------HhcCCCcCeE
Confidence 55533210 0 0124689999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccccc------Cc----chHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF------NN----AARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~------~~----~~~~F~~~~~~~g~~~~~~ 254 (269)
+. |. ....+..+++.+.++|+ |+|++++..-. +.|. .+ .+.+|.+++++..-+.+.+
T Consensus 134 ~~-d~--~~~~~~~~l~~~~~~Lk-pGG~lv~dn~~-~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 200 (221)
T 3dr5_A 134 FG-QV--SPMDLKALVDAAWPLLR-RGGALVLADAL-LDGTIADQTRKDRDTQAARDADEYIRSIEGAHVAR 200 (221)
T ss_dssp EE-CC--CTTTHHHHHHHHHHHEE-EEEEEEETTTT-GGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred EE-cC--cHHHHHHHHHHHHHHcC-CCcEEEEeCCC-CCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEE
Confidence 97 43 34567788999999999 88988874322 1111 11 3578999988765444444
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-08 Score=92.55 Aligned_cols=101 Identities=16% Similarity=0.235 Sum_probs=71.3
Q ss_pred CCCCEEEEEcCCCC-HHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 34 FRGKRVLELSCGYG-LPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 34 ~~~~~VLELGcGtG-l~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
-.+.+|||+|||+| +.++.+++....+|++.|+++++++.+ +.|+... .+ .+++|.
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~A-----r~~~~~~-----------------gl-~~v~~v 177 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELS-----RKVIEGL-----------------GV-DGVNVI 177 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHH-----HHHHHHH-----------------TC-CSEEEE
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHH-----HHHHHhc-----------------CC-CCeEEE
Confidence 47889999999997 566777764334899999999999543 3444321 02 356665
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|-.+. ...+||+|
T Consensus 178 ~gDa~~l-----------------------------------------------------------------~d~~FDvV 192 (298)
T 3fpf_A 178 TGDETVI-----------------------------------------------------------------DGLEFDVL 192 (298)
T ss_dssp ESCGGGG-----------------------------------------------------------------GGCCCSEE
T ss_pred ECchhhC-----------------------------------------------------------------CCCCcCEE
Confidence 5542211 13589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+.+-. ....+.+++.+.+.|+ |+|++++..
T Consensus 193 ~~~a~---~~d~~~~l~el~r~Lk-PGG~Lvv~~ 222 (298)
T 3fpf_A 193 MVAAL---AEPKRRVFRNIHRYVD-TETRIIYRT 222 (298)
T ss_dssp EECTT---CSCHHHHHHHHHHHCC-TTCEEEEEE
T ss_pred EECCC---ccCHHHHHHHHHHHcC-CCcEEEEEc
Confidence 97544 4678899999999999 899988764
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-08 Score=85.55 Aligned_cols=40 Identities=23% Similarity=0.184 Sum_probs=33.5
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcC-C-CeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKG-A-GTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~g-a-~~Vv~tD~~~~vl~~ 73 (269)
..+.+|||+|||+|..++.++..+ + .+|+++|.++.+++.
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~ 117 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEK 117 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHH
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence 467899999999999998777654 2 589999999999844
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.1e-09 Score=88.46 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIR 72 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~ 72 (269)
.+.+|||+|||+|..++.++... ..+|+++|+++.+++
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~ 65 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRME 65 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGH
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHH
Confidence 57799999999999998888764 358999999999874
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-08 Score=90.69 Aligned_cols=55 Identities=16% Similarity=0.126 Sum_probs=45.3
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
.+++-|.+.|... .....|++|||+|||||..+..++..|+.+|++.|.++.+|.
T Consensus 68 rg~~Kl~~~l~~~----~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~ 122 (291)
T 3hp7_A 68 RGGLKLEKALAVF----NLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLV 122 (291)
T ss_dssp TTHHHHHHHHHHT----TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSC
T ss_pred chHHHHHHHHHhc----CCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 5666677777654 245689999999999999998888889889999999998873
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-08 Score=91.77 Aligned_cols=79 Identities=20% Similarity=0.281 Sum_probs=53.9
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccC
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ 93 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~ 93 (269)
+.+..|++++.+... ...+.+|||+|||+|..++.++..+..+|+++|+++++++. .+.|...+.
T Consensus 106 ~~te~lv~~~l~~~~----~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~-----A~~n~~~~~------ 170 (284)
T 1nv8_A 106 PETEELVELALELIR----KYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEI-----ARKNAERHG------ 170 (284)
T ss_dssp TTHHHHHHHHHHHHH----HHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHH-----HHHHHHHTT------
T ss_pred hhHHHHHHHHHHHhc----ccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHH-----HHHHHHHcC------
Confidence 344566776665432 11467999999999999998887743589999999999944 445554321
Q ss_pred CCCCCCCCccCCCCeeeeecCCCCC
Q 024311 94 PESSLTPSRQTLAPSVHFYAGDWEE 118 (269)
Q Consensus 94 ~~~~~~~~~~~~~~~v~~~~~dw~~ 118 (269)
+..+++|+.+||..
T Consensus 171 -----------l~~~v~~~~~D~~~ 184 (284)
T 1nv8_A 171 -----------VSDRFFVRKGEFLE 184 (284)
T ss_dssp -----------CTTSEEEEESSTTG
T ss_pred -----------CCCceEEEECcchh
Confidence 22347787777664
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-08 Score=86.68 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=40.6
Q ss_pred eccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 13 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 13 W~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
|... .+++++.... ....+.+|||+|||+|..++.++..+ .+|+++|+++.+++.
T Consensus 53 ~~~~-~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~ 107 (231)
T 1vbf_A 53 TTAL-NLGIFMLDEL----DLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNY 107 (231)
T ss_dssp ECCH-HHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHH
T ss_pred cCCH-HHHHHHHHhc----CCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHH
Confidence 4443 3444454442 13367899999999999998888877 599999999998843
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.6e-09 Score=95.40 Aligned_cols=65 Identities=12% Similarity=0.180 Sum_probs=50.0
Q ss_pred CCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccc-------c------cc-----cCcchHHHHHHhhhc
Q 024311 186 EGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKN-------Y------VG-----FNNAARHLRSLVDEE 247 (269)
Q Consensus 186 ~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~-------~------fg-----~~~~~~~F~~~~~~~ 247 (269)
.++||+|+++.++++..+.+..++.++++|+ |+|+++++.... + ++ ..-+..++...+++.
T Consensus 133 ~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 211 (292)
T 2aot_A 133 LQKWDFIHMIQMLYYVKDIPATLKFFHSLLG-TNAKMLIIVVSGSSGWDKLWKKYGSRFPQDDLCQYITSDDLTQMLDNL 211 (292)
T ss_dssp CCCEEEEEEESCGGGCSCHHHHHHHHHHTEE-EEEEEEEEEECTTSHHHHHHHHHGGGSCCCTTCCCCCHHHHHHHHHHH
T ss_pred CCceeEEEEeeeeeecCCHHHHHHHHHHHcC-CCcEEEEEEecCCccHHHHHHHHHHhccCCCcccCCCHHHHHHHHHHC
Confidence 4689999999999999999999999999999 899988863211 0 00 012356778889999
Q ss_pred Ccee
Q 024311 248 GIFG 251 (269)
Q Consensus 248 g~~~ 251 (269)
||-.
T Consensus 212 Gf~~ 215 (292)
T 2aot_A 212 GLKY 215 (292)
T ss_dssp TCCE
T ss_pred CCce
Confidence 9743
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.89 E-value=4e-09 Score=92.08 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=45.4
Q ss_pred eccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 13 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 13 W~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
-.++..|.+.|... ....++++|||||||||..+..++..|+.+|++.|+++.+++
T Consensus 19 srg~~kL~~~L~~~----~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~ 74 (232)
T 3opn_A 19 SRGGLKLEKALKEF----HLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLA 74 (232)
T ss_dssp STTHHHHHHHHHHT----TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCC
T ss_pred CCcHHHHHHHHHHc----CCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 35666777777654 235578999999999999998888888789999999998873
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.89 E-value=4.8e-09 Score=89.64 Aligned_cols=38 Identities=16% Similarity=0.370 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~ 73 (269)
...+|||||||+|.+++.++.. ++ +|+++|+|+.+++.
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~lei 88 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAF 88 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHH
Confidence 4669999999999999988765 55 99999999999954
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-08 Score=93.19 Aligned_cols=119 Identities=23% Similarity=0.134 Sum_probs=81.0
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcC--CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCC
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE 95 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~g--a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~ 95 (269)
.|+..+.... ..-.+.+|||+|||+|...+.++..+ ..+|++.|+++.+++ ..+.|+..+.
T Consensus 190 ~la~~l~~~~----~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~-----~a~~n~~~~g-------- 252 (354)
T 3tma_A 190 VLAQALLRLA----DARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLG-----LAREAALASG-------- 252 (354)
T ss_dssp HHHHHHHHHT----TCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHH-----HHHHHHHHTT--------
T ss_pred HHHHHHHHHh----CCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHH-----HHHHHHHHcC--------
Confidence 4566555542 12367899999999999999888754 358999999999994 4556664421
Q ss_pred CCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchh
Q 024311 96 SSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRA 175 (269)
Q Consensus 96 ~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~ 175 (269)
+. ++++..+|..+.+
T Consensus 253 ---------~~-~i~~~~~D~~~~~------------------------------------------------------- 267 (354)
T 3tma_A 253 ---------LS-WIRFLRADARHLP------------------------------------------------------- 267 (354)
T ss_dssp ---------CT-TCEEEECCGGGGG-------------------------------------------------------
T ss_pred ---------CC-ceEEEeCChhhCc-------------------------------------------------------
Confidence 12 4566656544321
Q ss_pred hhhhcccccCCCCccEEEEeccccccCC---------HHHHHHHHHHhcCCCCeEEEEEEcc
Q 024311 176 WERASEADQGEGGYDVILLTEIPYSVTS---------LKKLYLLIKKCLRPPYGVVYLATKK 228 (269)
Q Consensus 176 W~~~~~~~~~~~~fDlIlasD~iY~~~~---------~~~L~~~l~~~L~~p~g~~~va~k~ 228 (269)
.....||+|++ |..|.... +..+++.++++|+ |+|.+++.+..
T Consensus 268 --------~~~~~~D~Ii~-npPyg~r~~~~~~~~~~~~~~~~~~~~~Lk-pgG~l~i~t~~ 319 (354)
T 3tma_A 268 --------RFFPEVDRILA-NPPHGLRLGRKEGLFHLYWDFLRGALALLP-PGGRVALLTLR 319 (354)
T ss_dssp --------GTCCCCSEEEE-CCCSCC----CHHHHHHHHHHHHHHHHTSC-TTCEEEEEESC
T ss_pred --------cccCCCCEEEE-CCCCcCccCCcccHHHHHHHHHHHHHHhcC-CCcEEEEEeCC
Confidence 12235899997 66775433 3678889999998 88999888653
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.5e-08 Score=84.79 Aligned_cols=105 Identities=14% Similarity=0.196 Sum_probs=71.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
++.+|||+|||+|..++.++... ..+|+++|.++.+++. .+.|+..+. ...++++..
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~~-----------------~~~~v~~~~ 111 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEE-----AHKHVKALG-----------------LESRIELLF 111 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHH-----HHHHHHHTT-----------------CTTTEEEEC
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHH-----HHHHHHHcC-----------------CCCcEEEEE
Confidence 57799999999999998877652 3599999999998843 444543320 123466655
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|...... .....++||+|+
T Consensus 112 ~d~~~~~~------------------------------------------------------------~~~~~~~fD~I~ 131 (233)
T 2gpy_A 112 GDALQLGE------------------------------------------------------------KLELYPLFDVLF 131 (233)
T ss_dssp SCGGGSHH------------------------------------------------------------HHTTSCCEEEEE
T ss_pred CCHHHHHH------------------------------------------------------------hcccCCCccEEE
Confidence 55433100 000135899999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
..... .....+++.+.++|+ |+|++++.
T Consensus 132 ~~~~~---~~~~~~l~~~~~~L~-pgG~lv~~ 159 (233)
T 2gpy_A 132 IDAAK---GQYRRFFDMYSPMVR-PGGLILSD 159 (233)
T ss_dssp EEGGG---SCHHHHHHHHGGGEE-EEEEEEEE
T ss_pred ECCCH---HHHHHHHHHHHHHcC-CCeEEEEE
Confidence 85442 467888999999998 89998886
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-08 Score=94.02 Aligned_cols=112 Identities=16% Similarity=0.161 Sum_probs=78.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
.|.+|||+|||+|..++. +. ++.+|++.|.++.+++ .++.|+..|. +..+++++.+
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~-----~a~~n~~~n~-----------------l~~~v~~~~~ 250 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIE-----LLKKNIKLNK-----------------LEHKIIPILS 250 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHH-----HHHHHHHHTT-----------------CTTTEEEEES
T ss_pred CCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHH-----HHHHHHHHcC-----------------CCCcEEEEEC
Confidence 688999999999999999 77 6779999999999984 4556665441 1234555545
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|..+ .. .+||+|+.
T Consensus 251 D~~~-----------------------------------------------------------------~~-~~fD~Vi~ 264 (336)
T 2yx1_A 251 DVRE-----------------------------------------------------------------VD-VKGNRVIM 264 (336)
T ss_dssp CGGG-----------------------------------------------------------------CC-CCEEEEEE
T ss_pred ChHH-----------------------------------------------------------------hc-CCCcEEEE
Confidence 4321 01 58999998
Q ss_pred eccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhc
Q 024311 195 TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEE 247 (269)
Q Consensus 195 sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~ 247 (269)
|..|.. ..+++.+.++|+ |+|.+++.+.... ...+.+.+++.
T Consensus 265 -dpP~~~---~~~l~~~~~~L~-~gG~l~~~~~~~~------~~~~~~~l~~~ 306 (336)
T 2yx1_A 265 -NLPKFA---HKFIDKALDIVE-EGGVIHYYTIGKD------FDKAIKLFEKK 306 (336)
T ss_dssp -CCTTTG---GGGHHHHHHHEE-EEEEEEEEEEESS------SHHHHHHHHHH
T ss_pred -CCcHhH---HHHHHHHHHHcC-CCCEEEEEEeecC------chHHHHHHHHh
Confidence 655443 367778888898 8898777644321 45677777766
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.88 E-value=8.1e-09 Score=89.39 Aligned_cols=144 Identities=19% Similarity=0.262 Sum_probs=88.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC--CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g--a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
++++|||+|||+|..++.++... ..+|++.|+++.+++. .+.|+..+. ...++++.
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~g-----------------~~~~v~~~ 117 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNV-----ARKYWKENG-----------------LENKIFLK 117 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHH-----HHHHHHHTT-----------------CGGGEEEE
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHcC-----------------CCCCEEEE
Confidence 57799999999999998877652 3599999999998844 344443210 11246666
Q ss_pred cCCCCCc-chhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCC--CCc
Q 024311 113 AGDWEEL-PTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGE--GGY 189 (269)
Q Consensus 113 ~~dw~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~--~~f 189 (269)
.+|..+. +... .+ .. ...|...+ .. ++|
T Consensus 118 ~~d~~~~~~~~~----~~----------------------------------------~~-~~~~~~~f----~~~~~~f 148 (239)
T 2hnk_A 118 LGSALETLQVLI----DS----------------------------------------KS-APSWASDF----AFGPSSI 148 (239)
T ss_dssp ESCHHHHHHHHH----HC----------------------------------------SS-CCGGGTTT----CCSTTCE
T ss_pred ECCHHHHHHHHH----hh----------------------------------------cc-cccccccc----cCCCCCc
Confidence 6654331 1000 00 00 00143322 22 689
Q ss_pred cEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccccc----------CcchHHHHHHhhhcCceeEEE
Q 024311 190 DVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------NNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 190 DlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~----------~~~~~~F~~~~~~~g~~~~~~ 254 (269)
|+|+.. +....++.+++.+.++|+ |+|++++..-. +.|. ...+..|.+.+.....+.+..
T Consensus 149 D~I~~~---~~~~~~~~~l~~~~~~L~-pgG~lv~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (239)
T 2hnk_A 149 DLFFLD---ADKENYPNYYPLILKLLK-PGGLLIADNVL-WDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSL 218 (239)
T ss_dssp EEEEEC---SCGGGHHHHHHHHHHHEE-EEEEEEEECSS-GGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred CEEEEe---CCHHHHHHHHHHHHHHcC-CCeEEEEEccc-cCCcccCccccchHHHHHHHHHHHHhhCCCeEEEE
Confidence 999975 345667788999999998 89998876422 1120 013567888887766555544
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.1e-08 Score=92.11 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=43.3
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.++..|.... ...+.+|||+|||+|...+.++..+. .+|+++|+++.+++. .+.|+..
T Consensus 205 ~la~~l~~~~-----~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~-----A~~n~~~ 263 (373)
T 3tm4_A 205 SIANAMIELA-----ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIG-----AEMNALA 263 (373)
T ss_dssp HHHHHHHHHH-----TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHhh-----cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHH-----HHHHHHH
Confidence 4555554442 22578999999999999999998876 389999999999944 4555543
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-09 Score=106.27 Aligned_cols=38 Identities=34% Similarity=0.460 Sum_probs=34.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
++.+|||+|||.|+.+..+|+.|+ +|++.|.++..|+.
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~ 103 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINV 103 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHH
Confidence 567999999999999999999999 89999999988743
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1e-07 Score=88.21 Aligned_cols=138 Identities=17% Similarity=0.131 Sum_probs=94.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||+|||+|...+.++... ..++++.|+ +++++... ..++++|..
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----------------------------~~~~v~~~~ 252 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAP-----------------------------AFSGVEHLG 252 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----------------------------CCTTEEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhh-----------------------------hcCCCEEEe
Confidence 46799999999999997776643 348999999 87763210 013566666
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+ + ... . |+|+
T Consensus 253 ~d~~~-~---------------------------------------------------------------~p~-~-D~v~ 266 (368)
T 3reo_A 253 GDMFD-G---------------------------------------------------------------VPK-G-DAIF 266 (368)
T ss_dssp CCTTT-C---------------------------------------------------------------CCC-C-SEEE
T ss_pred cCCCC-C---------------------------------------------------------------CCC-C-CEEE
Confidence 65432 1 011 2 9999
Q ss_pred EeccccccCC--HHHHHHHHHHhcCCCCeEEEEEEccc------------------------ccccCcchHHHHHHhhhc
Q 024311 194 LTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKN------------------------YVGFNNAARHLRSLVDEE 247 (269)
Q Consensus 194 asD~iY~~~~--~~~L~~~l~~~L~~p~g~~~va~k~~------------------------~fg~~~~~~~F~~~~~~~ 247 (269)
.+.++++... ...+++.+++.|+ |+|+++|..... .-|...+..++.+.+++.
T Consensus 267 ~~~vlh~~~~~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~A 345 (368)
T 3reo_A 267 IKWICHDWSDEHCLKLLKNCYAALP-DHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMAS 345 (368)
T ss_dssp EESCGGGBCHHHHHHHHHHHHHHSC-TTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHT
T ss_pred EechhhcCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHC
Confidence 9999986654 3478999999998 899988863211 012223567899999999
Q ss_pred CceeEEEEeeecCcceEEEEeC
Q 024311 248 GIFGAHLIKEMTDRDIWKFFLK 269 (269)
Q Consensus 248 g~~~~~~~~~~~~~~i~~~~~~ 269 (269)
||-.+++..-.....|..+++|
T Consensus 346 GF~~v~~~~~~~~~~vie~~k~ 367 (368)
T 3reo_A 346 GFRGFKVASCAFNTYVMEFLKT 367 (368)
T ss_dssp TCCEEEEEEEETTEEEEEEECC
T ss_pred CCeeeEEEEeCCCcEEEEEEeC
Confidence 9977777665555566666654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-08 Score=89.09 Aligned_cols=46 Identities=15% Similarity=0.155 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc---CCCeEEEEeCCHHHHHHhhHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK---GAGTVHFQDLSAETIRCTTVPNVLA 81 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~---ga~~Vv~tD~~~~vl~~~~~~Nl~~ 81 (269)
.+.+|||+|||+|..++.++.. +..+|+++|+++.+++.+ ..|+..
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A-~~~~~~ 99 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELA-AKNLAL 99 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHH-HHHHHT
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHH-HHHHHH
Confidence 5679999999999999887765 234899999999999654 344443
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.3e-08 Score=85.49 Aligned_cols=40 Identities=10% Similarity=0.065 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~ 74 (269)
++.+|||||||+|...+.+|... ...|++.|+++.+++.+
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A 86 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYV 86 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHH
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHH
Confidence 56799999999999998887753 35899999999998543
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.85 E-value=4.4e-08 Score=89.06 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|.+|||+|||+|..++.++.. +..+|++.|+++.+++ .++.|+..
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~-----~a~~~~~~ 165 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLR-----ETRLNLSR 165 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHH-----HHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHH-----HHHHHHHH
Confidence 5789999999999999877754 2358999999999884 44555543
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.4e-09 Score=91.06 Aligned_cols=136 Identities=19% Similarity=0.253 Sum_probs=87.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
++++|||+|||+|..++.++.. + ..+|++.|+++++++. .+.|+..+ .+..+++++
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~-----a~~~~~~~-----------------g~~~~i~~~ 117 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKH-----AHPYWREA-----------------KQEHKIKLR 117 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCC-----SHHHHHHT-----------------TCTTTEEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHc-----------------CCCCcEEEE
Confidence 5679999999999999888763 2 3489999999988743 33444322 022467777
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+... .... ....++||+|
T Consensus 118 ~gda~~~l~--------------------------------------------------------~~~~-~~~~~~fD~V 140 (242)
T 3r3h_A 118 LGPALDTLH--------------------------------------------------------SLLN-EGGEHQFDFI 140 (242)
T ss_dssp ESCHHHHHH--------------------------------------------------------HHHH-HHCSSCEEEE
T ss_pred EcCHHHHHH--------------------------------------------------------HHhh-ccCCCCEeEE
Confidence 666432110 0000 0014589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccccc----------CcchHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------NNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~----------~~~~~~F~~~~~~~g~~~~~~ 254 (269)
+. |.. ...+..+++.+.++|+ |+|++++..-. +.|. ...+.+|.+.+.+..-+.+.+
T Consensus 141 ~~-d~~--~~~~~~~l~~~~~~Lk-pGG~lv~d~~~-~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 207 (242)
T 3r3h_A 141 FI-DAD--KTNYLNYYELALKLVT-PKGLIAIDNIF-WDGKVIDPNDTSGQTREIKKLNQVIKNDSRVFVSL 207 (242)
T ss_dssp EE-ESC--GGGHHHHHHHHHHHEE-EEEEEEEECSS-SSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred EE-cCC--hHHhHHHHHHHHHhcC-CCeEEEEECCc-cCCcccCccccChHHHHHHHHHHHHhhCCCEEEEE
Confidence 97 332 5567788889999998 89988875322 2221 013788999998876555544
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=2.3e-08 Score=90.68 Aligned_cols=52 Identities=21% Similarity=0.192 Sum_probs=38.5
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCC--CeEEEEeCCHHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRC 73 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga--~~Vv~tD~~~~vl~~ 73 (269)
.+.+.+.... ....+.+|||+|||+|..++.++..+. .+|+++|+++++++.
T Consensus 62 ~~~~~l~~~l----~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~ 115 (317)
T 1dl5_A 62 SLMALFMEWV----GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEI 115 (317)
T ss_dssp HHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHH
T ss_pred HHHHHHHHhc----CCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHH
Confidence 4444554442 123678999999999999988877654 369999999999843
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.4e-08 Score=89.72 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=51.7
Q ss_pred CccEEEEeccccccCCH--HHHHHHHHHhcCCCCeEEEEEEcccc-------------------cccCcchHHHHHHhhh
Q 024311 188 GYDVILLTEIPYSVTSL--KKLYLLIKKCLRPPYGVVYLATKKNY-------------------VGFNNAARHLRSLVDE 246 (269)
Q Consensus 188 ~fDlIlasD~iY~~~~~--~~L~~~l~~~L~~p~g~~~va~k~~~-------------------fg~~~~~~~F~~~~~~ 246 (269)
+||+|+++.++++.... ..+++.+++.|+ |+|+++|...... .|...+..++.+.+++
T Consensus 247 ~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lk-pgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~ 325 (348)
T 3lst_A 247 HADVHVLKRILHNWGDEDSVRILTNCRRVMP-AHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLFTA 325 (348)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHTCC-TTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHHHH
T ss_pred CCcEEEEehhccCCCHHHHHHHHHHHHHhcC-CCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHHHH
Confidence 89999999999988766 589999999998 8999988642110 0112357889999999
Q ss_pred cCceeEEEEe
Q 024311 247 EGIFGAHLIK 256 (269)
Q Consensus 247 ~g~~~~~~~~ 256 (269)
.||-..++..
T Consensus 326 aGf~~~~~~~ 335 (348)
T 3lst_A 326 AGLRLDRVVG 335 (348)
T ss_dssp TTEEEEEEEE
T ss_pred CCCceEEEEE
Confidence 9986666644
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.83 E-value=4.1e-08 Score=87.27 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=35.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHH--cCCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~--~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|.+|||+|||+|..++.++. .+..+|++.|.++..++ .++.|+..
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~-----~~~~~~~~ 130 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTK-----ALKSNINR 130 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHH-----HHHHHHHH
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHH-----HHHHHHHH
Confidence 578999999999999977665 34469999999999884 44555543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.8e-08 Score=88.32 Aligned_cols=39 Identities=23% Similarity=0.231 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||+|||+|..+..++.. +..+|++.|.++.+++.
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~ 124 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKA 124 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHH
Confidence 6789999999999999877765 23489999999998843
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.6e-08 Score=85.03 Aligned_cols=136 Identities=18% Similarity=0.168 Sum_probs=85.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
++++|||+|||+|..++.++.. + ..+|+++|.++.+++. .+.|+..+. ...++++.
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~-----a~~~~~~~g-----------------~~~~i~~~ 126 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPEL-----GRPLWRQAE-----------------AEHKIDLR 126 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHH-----HHHHHHHTT-----------------CTTTEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHCC-----------------CCCeEEEE
Confidence 6789999999999999888764 2 3599999999998844 344443220 12356666
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+... ..... ...++||+|
T Consensus 127 ~~d~~~~~~--------------------------------------------------------~~~~~-~~~~~~D~v 149 (229)
T 2avd_A 127 LKPALETLD--------------------------------------------------------ELLAA-GEAGTFDVA 149 (229)
T ss_dssp ESCHHHHHH--------------------------------------------------------HHHHT-TCTTCEEEE
T ss_pred EcCHHHHHH--------------------------------------------------------HHHhc-CCCCCccEE
Confidence 555432100 00000 012589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccccc----------CcchHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------NNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~----------~~~~~~F~~~~~~~g~~~~~~ 254 (269)
+. |.. ...+..+++.+.++|+ |+|++++..-. +.|. ...+.+|.+.+.+..-+.+.+
T Consensus 150 ~~-d~~--~~~~~~~l~~~~~~L~-pgG~lv~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 216 (229)
T 2avd_A 150 VV-DAD--KENCSAYYERCLQLLR-PGGILAVLRVL-WRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISL 216 (229)
T ss_dssp EE-CSC--STTHHHHHHHHHHHEE-EEEEEEEECCS-GGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred EE-CCC--HHHHHHHHHHHHHHcC-CCeEEEEECCC-cCCcccCcccCChHHHHHHHHHHHHhhCCCEEEEE
Confidence 98 332 4567788999999998 89988875321 1110 113578888887765444443
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.7e-08 Score=81.79 Aligned_cols=50 Identities=32% Similarity=0.270 Sum_probs=36.5
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CC---------CeEEEEeCCH
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GA---------GTVHFQDLSA 68 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga---------~~Vv~tD~~~ 68 (269)
++..|.+..... ...-.+.+|||||||+|..++.++.. ++ .+|++.|+++
T Consensus 6 ~~~kl~~l~~~~----~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~ 65 (196)
T 2nyu_A 6 SAFKLLEVNERH----QILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLH 65 (196)
T ss_dssp HHHHHHHHHHHH----CCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSC
T ss_pred HHHHHHHHHHhc----CCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechh
Confidence 344555554443 22346789999999999999887765 53 5899999987
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.81 E-value=8.8e-08 Score=87.22 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=34.7
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-CC-CeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-ga-~~Vv~tD~~~~vl~~ 73 (269)
..+.+|||+|||+|..++.++.. |+ .+|++.|+++.+++.
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~ 145 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDL 145 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHH
Confidence 46889999999999999888875 65 699999999999854
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-08 Score=89.05 Aligned_cols=109 Identities=16% Similarity=0.217 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
++++|||+|||+|..++.++.. + ..+|++.|+++++++. .+.|+..+. +..+++++
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~-----a~~~~~~~g-----------------~~~~i~~~ 136 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYEL-----GLPVIKKAG-----------------VDHKIDFR 136 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHH-----HHHHHHHTT-----------------CGGGEEEE
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHcC-----------------CCCCeEEE
Confidence 5679999999999999887764 2 2489999999999844 444543320 12356776
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.. + .........++||+|
T Consensus 137 ~gda~~~l--~------------------------------------------------------~l~~~~~~~~~fD~V 160 (247)
T 1sui_A 137 EGPALPVL--D------------------------------------------------------EMIKDEKNHGSYDFI 160 (247)
T ss_dssp ESCHHHHH--H------------------------------------------------------HHHHSGGGTTCBSEE
T ss_pred ECCHHHHH--H------------------------------------------------------HHHhccCCCCCEEEE
Confidence 66643310 0 000000014589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
+. |. ....+..+++.+.++|+ |+|++++.
T Consensus 161 ~~-d~--~~~~~~~~l~~~~~~Lk-pGG~lv~d 189 (247)
T 1sui_A 161 FV-DA--DKDNYLNYHKRLIDLVK-VGGVIGYD 189 (247)
T ss_dssp EE-CS--CSTTHHHHHHHHHHHBC-TTCCEEEE
T ss_pred EE-cC--chHHHHHHHHHHHHhCC-CCeEEEEe
Confidence 97 32 24568889999999998 89988765
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=98.79 E-value=6.1e-08 Score=92.22 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=35.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHh
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~ 74 (269)
..+.+|||||||+|..++.++.. |..+|++.|+++.+++.+
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A 282 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLT 282 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 36889999999999999888874 666899999999988654
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.79 E-value=6.1e-08 Score=84.25 Aligned_cols=137 Identities=17% Similarity=0.198 Sum_probs=85.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
++++|||+|||+|..++.++.. + ..+|++.|+++++++. .+.|+..+. ...++++.
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~-----a~~~~~~~g-----------------~~~~i~~~ 127 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEI-----GLPFIRKAG-----------------VEHKINFI 127 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHH-----HHHHHHHTT-----------------CGGGEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHcC-----------------CCCcEEEE
Confidence 5779999999999999887764 2 3599999999999843 445553320 12356776
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+... . ........++||+|
T Consensus 128 ~gda~~~l~---~-----------------------------------------------------l~~~~~~~~~fD~I 151 (237)
T 3c3y_A 128 ESDAMLALD---N-----------------------------------------------------LLQGQESEGSYDFG 151 (237)
T ss_dssp ESCHHHHHH---H-----------------------------------------------------HHHSTTCTTCEEEE
T ss_pred EcCHHHHHH---H-----------------------------------------------------HHhccCCCCCcCEE
Confidence 666443100 0 00000014589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccccc---------------CcchHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF---------------NNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~---------------~~~~~~F~~~~~~~g~~~~~~ 254 (269)
+. | .....+..+++.+.++|+ |+|++++..-. +.|. ...+.+|.+.+.+..-+...+
T Consensus 152 ~~-d--~~~~~~~~~l~~~~~~L~-pGG~lv~d~~~-~~g~~~~~~~~~~~~~r~~~~~i~~~~~~l~~~~~~~~~~ 223 (237)
T 3c3y_A 152 FV-D--ADKPNYIKYHERLMKLVK-VGGIVAYDNTL-WGGTVAQPESEVPDFMKENREAVIELNKLLAADPRIEIVH 223 (237)
T ss_dssp EE-C--SCGGGHHHHHHHHHHHEE-EEEEEEEECTT-GGGGGGSCGGGSCGGGHHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred EE-C--CchHHHHHHHHHHHHhcC-CCeEEEEecCC-cCCccCCCcccchhhHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 97 3 235567889999999998 89988775321 1110 012348888887765554444
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.8e-08 Score=84.23 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=39.7
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
...++..+.... ....+.+|||+|||+|..++.++..+..+|+++|+++.+++.
T Consensus 76 ~~~~~~~~~~~l----~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~ 129 (235)
T 1jg1_A 76 APHMVAIMLEIA----NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEF 129 (235)
T ss_dssp CHHHHHHHHHHH----TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHH
T ss_pred cHHHHHHHHHhc----CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHH
Confidence 344555555543 133677999999999999988776643589999999998843
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.78 E-value=3.7e-08 Score=83.23 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=38.4
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCH
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA 68 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~ 68 (269)
|+.-|.+.+.+.. ..-++.+|||||||+|..++.++..++ +|++.|+++
T Consensus 9 a~~KL~ei~~~~~----~~~~g~~VLDlG~G~G~~s~~la~~~~-~V~gvD~~~ 57 (191)
T 3dou_A 9 AAFKLEFLLDRYR----VVRKGDAVIEIGSSPGGWTQVLNSLAR-KIISIDLQE 57 (191)
T ss_dssp HHHHHHHHHHHHC----CSCTTCEEEEESCTTCHHHHHHTTTCS-EEEEEESSC
T ss_pred HHHHHHHHHHHcC----CCCCCCEEEEEeecCCHHHHHHHHcCC-cEEEEeccc
Confidence 5666666665541 234688999999999999999888754 899999986
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-07 Score=88.55 Aligned_cols=136 Identities=21% Similarity=0.229 Sum_probs=89.7
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCC
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE 95 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~ 95 (269)
+..|.+++.+... ...+.+|||||||+|..++.++..+ .+|+++|+++++++ ..+.|+..+.
T Consensus 271 ~e~l~~~~~~~l~----~~~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~-----~A~~n~~~~~-------- 332 (433)
T 1uwv_A 271 NQKMVARALEWLD----VQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVE-----KGQQNARLNG-------- 332 (433)
T ss_dssp HHHHHHHHHHHHT----CCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHH-----HHHHHHHHTT--------
T ss_pred HHHHHHHHHHhhc----CCCCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHH-----HHHHHHHHcC--------
Confidence 4456666655431 2357799999999999999998874 49999999999984 4555654431
Q ss_pred CCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchh
Q 024311 96 SSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRA 175 (269)
Q Consensus 96 ~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~ 175 (269)
+ .+++|+.+|+.+... .+
T Consensus 333 ---------~-~~v~f~~~d~~~~l~-----------------------------------------------~~----- 350 (433)
T 1uwv_A 333 ---------L-QNVTFYHENLEEDVT-----------------------------------------------KQ----- 350 (433)
T ss_dssp ---------C-CSEEEEECCTTSCCS-----------------------------------------------SS-----
T ss_pred ---------C-CceEEEECCHHHHhh-----------------------------------------------hh-----
Confidence 1 267888888765210 00
Q ss_pred hhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCc
Q 024311 176 WERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI 249 (269)
Q Consensus 176 W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~ 249 (269)
.....+||+|+. |..|... ..+++.|.. ++ |++++|+++.... ...-...+.+.|+
T Consensus 351 -------~~~~~~fD~Vv~-dPPr~g~--~~~~~~l~~-~~-p~~ivyvsc~p~t------lard~~~l~~~Gy 406 (433)
T 1uwv_A 351 -------PWAKNGFDKVLL-DPARAGA--AGVMQQIIK-LE-PIRIVYVSCNPAT------LARDSEALLKAGY 406 (433)
T ss_dssp -------GGGTTCCSEEEE-CCCTTCC--HHHHHHHHH-HC-CSEEEEEESCHHH------HHHHHHHHHHTTC
T ss_pred -------hhhcCCCCEEEE-CCCCccH--HHHHHHHHh-cC-CCeEEEEECChHH------HHhhHHHHHHCCc
Confidence 012347999997 8887654 356666665 45 8899999876542 3333455566675
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=8e-08 Score=86.64 Aligned_cols=40 Identities=15% Similarity=0.073 Sum_probs=34.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~ 74 (269)
++++|||||||+|..++.++.. +..+|++.|+++.+++.+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a 130 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAA 130 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHH
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence 4679999999999999888876 557999999999999553
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.75 E-value=3e-08 Score=84.63 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=33.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCC------CeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGA------GTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga------~~Vv~tD~~~~vl~~ 73 (269)
..+.+|||+|||+|..++.++.... .+|+++|+++++++.
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~ 124 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNF 124 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHH
Confidence 3678999999999999988776542 489999999999854
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.7e-07 Score=84.48 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=50.2
Q ss_pred CccEEEEeccccccCCHH--HHHHHHHHhcCCC---CeEEEEEEcccc---------------------c-ccCcchHHH
Q 024311 188 GYDVILLTEIPYSVTSLK--KLYLLIKKCLRPP---YGVVYLATKKNY---------------------V-GFNNAARHL 240 (269)
Q Consensus 188 ~fDlIlasD~iY~~~~~~--~L~~~l~~~L~~p---~g~~~va~k~~~---------------------f-g~~~~~~~F 240 (269)
.||+|+++.++++....+ .+++.+++.|+ | +|+++|...... + |...+..++
T Consensus 246 ~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~-p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~ 324 (352)
T 1fp2_A 246 NADAVLLKYILHNWTDKDCLRILKKCKEAVT-NDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEW 324 (352)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHHHS-GGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHH
T ss_pred CccEEEeehhhccCCHHHHHHHHHHHHHhCC-CCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHH
Confidence 399999999999887766 89999999999 7 898887632110 0 112346788
Q ss_pred HHHhhhcCceeEEEEe
Q 024311 241 RSLVDEEGIFGAHLIK 256 (269)
Q Consensus 241 ~~~~~~~g~~~~~~~~ 256 (269)
.+.+++.||-..++..
T Consensus 325 ~~ll~~aGf~~~~~~~ 340 (352)
T 1fp2_A 325 KKLFIEAGFQHYKISP 340 (352)
T ss_dssp HHHHHHTTCCEEEEEE
T ss_pred HHHHHHCCCCeeEEEe
Confidence 9999999986555543
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-07 Score=79.04 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=37.3
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-C--CCeEEEEeCCH
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G--AGTVHFQDLSA 68 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-g--a~~Vv~tD~~~ 68 (269)
++..|.+.+.+. ...-.+.+|||||||+|..++.++.. + ..+|++.|+++
T Consensus 6 ~~~kl~~~~~~~----~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~ 58 (201)
T 2plw_A 6 AAYKLIELDNKY----LFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI 58 (201)
T ss_dssp THHHHHHHHHHH----CCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred HHHHHHHHHHHc----CCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence 566677755543 12336789999999999999887764 3 35899999987
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.6e-08 Score=83.22 Aligned_cols=135 Identities=13% Similarity=0.143 Sum_probs=83.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
++++|||+|||+|..++.++.. + ..+|+++|.+++.++. .+.|+..+. ...++++.
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~-----a~~~~~~~g-----------------~~~~i~~~ 129 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAI-----AKKYWQKAG-----------------VAEKISLR 129 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHH-----HHHHHHHHT-----------------CGGGEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH-----HHHHHHHcC-----------------CCCcEEEE
Confidence 5679999999999999888764 2 2489999999998844 344443220 11346665
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.. . .. ......++||+|
T Consensus 130 ~~d~~~~l--~------------------------------------------------------~l-~~~~~~~~fD~V 152 (232)
T 3cbg_A 130 LGPALATL--E------------------------------------------------------QL-TQGKPLPEFDLI 152 (232)
T ss_dssp ESCHHHHH--H------------------------------------------------------HH-HTSSSCCCEEEE
T ss_pred EcCHHHHH--H------------------------------------------------------HH-HhcCCCCCcCEE
Confidence 55533210 0 00 000011589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccccc----------CcchHHHHHHhhhcCceeEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------NNAARHLRSLVDEEGIFGAH 253 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~----------~~~~~~F~~~~~~~g~~~~~ 253 (269)
+. |.. ...+..+++.+.++|+ |+|++++..-.+ .|. ...+.+|.+.+.+..-+...
T Consensus 153 ~~-d~~--~~~~~~~l~~~~~~Lk-pgG~lv~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (232)
T 3cbg_A 153 FI-DAD--KRNYPRYYEIGLNLLR-RGGLMVIDNVLW-HGKVTEVDPQEAQTQVLQQFNRDLAQDERVRIS 218 (232)
T ss_dssp EE-CSC--GGGHHHHHHHHHHTEE-EEEEEEEECTTG-GGGGGCSSCCSHHHHHHHHHHHHHTTCTTEEEE
T ss_pred EE-CCC--HHHHHHHHHHHHHHcC-CCeEEEEeCCCc-CCccCCcccCChHHHHHHHHHHHHhhCCCeEEE
Confidence 96 332 4567888899999998 899988753221 110 01356788888765434333
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=8.2e-08 Score=85.82 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=35.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~ 74 (269)
++++|||||||+|..++.++..+..+|++.|+++.+++.+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~a 114 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVS 114 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence 5689999999999999888877767999999999999654
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.74 E-value=4.8e-07 Score=78.63 Aligned_cols=39 Identities=5% Similarity=-0.054 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
++.+|||+|||+|..++.++.. ...+|+++|+++.+++.
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~ 104 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNY 104 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHH
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence 5789999999999988776654 23489999999999944
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-07 Score=84.39 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=35.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~ 74 (269)
++++|||||||+|..+..+++. +..+|++.|+++.+++.+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~a 115 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYS 115 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHH
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHH
Confidence 5789999999999999888876 667999999999999654
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=7.4e-08 Score=87.98 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
++++|||||||+|..++.+++. +..+|++.|+++++++.
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ 155 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEV 155 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHH
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHH
Confidence 4679999999999999888876 45699999999999854
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.5e-07 Score=89.35 Aligned_cols=46 Identities=26% Similarity=0.378 Sum_probs=37.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
.+.+|||||||+|..++.++..+. +|++.|+++++++ ..+.|+..|
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~-----~A~~n~~~n 335 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIE-----MARRNVEIN 335 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHH-----HHHHHHHHH
T ss_pred CCCEEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHH-----HHHHHHHHc
Confidence 577999999999999999888755 8999999999984 445555443
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-07 Score=85.52 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=34.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~ 74 (269)
++++|||||||+|..+..++.. +..+|++.|+++.+++.+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a 117 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVA 117 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence 5679999999999999888876 456999999999999654
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=4.6e-07 Score=83.74 Aligned_cols=135 Identities=19% Similarity=0.104 Sum_probs=90.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||+|||+|.....++.. +..++++.|+ +++++... ..++++|..
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----------------------------~~~~v~~~~ 250 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAP-----------------------------QFPGVTHVG 250 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-----------------------------CCTTEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhh-----------------------------hcCCeEEEe
Confidence 5689999999999999777654 3458999999 87762210 013566666
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+ + ... . |+|+
T Consensus 251 ~D~~~-~---------------------------------------------------------------~p~-~-D~v~ 264 (364)
T 3p9c_A 251 GDMFK-E---------------------------------------------------------------VPS-G-DTIL 264 (364)
T ss_dssp CCTTT-C---------------------------------------------------------------CCC-C-SEEE
T ss_pred CCcCC-C---------------------------------------------------------------CCC-C-CEEE
Confidence 65432 1 011 2 9999
Q ss_pred EeccccccC--CHHHHHHHHHHhcCCCCeEEEEEEccc------------------------ccccCcchHHHHHHhhhc
Q 024311 194 LTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKN------------------------YVGFNNAARHLRSLVDEE 247 (269)
Q Consensus 194 asD~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~k~~------------------------~fg~~~~~~~F~~~~~~~ 247 (269)
.+.++++.. ....+++.+++.|+ |+|+++|..... .-|...+..+|.+.+++.
T Consensus 265 ~~~vlh~~~d~~~~~~L~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~A 343 (364)
T 3p9c_A 265 MKWILHDWSDQHCATLLKNCYDALP-AHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGA 343 (364)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHSC-TTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHT
T ss_pred ehHHhccCCHHHHHHHHHHHHHHcC-CCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHC
Confidence 999999664 45578999999998 899988863211 011223467899999999
Q ss_pred CceeEEEEeeecCcceEEE
Q 024311 248 GIFGAHLIKEMTDRDIWKF 266 (269)
Q Consensus 248 g~~~~~~~~~~~~~~i~~~ 266 (269)
||-.+++..-.....|-.+
T Consensus 344 GF~~v~~~~~~~~~~vie~ 362 (364)
T 3p9c_A 344 GFTGVKSTYIYANAWAIEF 362 (364)
T ss_dssp TCCEEEEEEEETTEEEEEE
T ss_pred CCceEEEEEcCCceEEEEE
Confidence 9876776554444444443
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.9e-08 Score=91.93 Aligned_cols=47 Identities=30% Similarity=0.357 Sum_probs=37.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
.+.+|||+|||+|..|+.++.. ++.+|++.|.+++.++.+ ..|+++|
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a-~~N~~~n 94 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELM-KRNVMLN 94 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHH-HHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHH-HHHHHHh
Confidence 5789999999999999998876 666899999999998442 3444433
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.7e-08 Score=84.06 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=33.7
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-CC-CeEEEEeCCHHHHHHh
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRCT 74 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-ga-~~Vv~tD~~~~vl~~~ 74 (269)
..+.+|||+|||+|..++.++.. +. .+|+++|+++.+++.+
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a 118 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDS 118 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHH
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHH
Confidence 36789999999999999877764 43 4899999999998543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-07 Score=83.89 Aligned_cols=113 Identities=13% Similarity=0.158 Sum_probs=76.9
Q ss_pred CCEEEEEcCCC---CHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 36 GKRVLELSCGY---GLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 36 ~~~VLELGcGt---Gl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
..+|||||||+ |.....++.. ...+|++.|+++.+|+.+ +.++.. ..++++
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~A-----r~~~~~--------------------~~~v~~ 132 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHG-----RALLAK--------------------DPNTAV 132 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHH-----HHHHTT--------------------CTTEEE
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHH-----HHhcCC--------------------CCCeEE
Confidence 47999999999 9777555543 234899999999998542 332210 135778
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhc-ccccCCCCcc
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERAS-EADQGEGGYD 190 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~-~~~~~~~~fD 190 (269)
+.+|..+.+..... .. .......+||
T Consensus 133 ~~~D~~~~~~~~~~-----------------------------------------------------~~~~~~~d~~~~d 159 (274)
T 2qe6_A 133 FTADVRDPEYILNH-----------------------------------------------------PDVRRMIDFSRPA 159 (274)
T ss_dssp EECCTTCHHHHHHS-----------------------------------------------------HHHHHHCCTTSCC
T ss_pred EEeeCCCchhhhcc-----------------------------------------------------chhhccCCCCCCE
Confidence 77776653221100 00 0001224899
Q ss_pred EEEEeccccccCC--HHHHHHHHHHhcCCCCeEEEEEEc
Q 024311 191 VILLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATK 227 (269)
Q Consensus 191 lIlasD~iY~~~~--~~~L~~~l~~~L~~p~g~~~va~k 227 (269)
+|++..++++... ...+++.+.+.|+ |+|.+++...
T Consensus 160 ~v~~~~vlh~~~d~~~~~~l~~~~~~L~-pGG~l~i~~~ 197 (274)
T 2qe6_A 160 AIMLVGMLHYLSPDVVDRVVGAYRDALA-PGSYLFMTSL 197 (274)
T ss_dssp EEEETTTGGGSCTTTHHHHHHHHHHHSC-TTCEEEEEEE
T ss_pred EEEEechhhhCCcHHHHHHHHHHHHhCC-CCcEEEEEEe
Confidence 9999999998765 8899999999998 8999888753
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=7.6e-08 Score=83.83 Aligned_cols=122 Identities=11% Similarity=0.015 Sum_probs=77.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-----CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-----GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSV 109 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-----ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v 109 (269)
++.+|||||||+|..++.++.. ...+|++.|+++++++.+. + ...++
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~----------------------~~~~v 132 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------S----------------------DMENI 132 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------G----------------------GCTTE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------c----------------------cCCce
Confidence 4679999999999999887765 2358999999998874321 0 11357
Q ss_pred eeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCc
Q 024311 110 HFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGY 189 (269)
Q Consensus 110 ~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~f 189 (269)
+++.+|..+...+. .....+|
T Consensus 133 ~~~~gD~~~~~~l~-----------------------------------------------------------~~~~~~f 153 (236)
T 2bm8_A 133 TLHQGDCSDLTTFE-----------------------------------------------------------HLREMAH 153 (236)
T ss_dssp EEEECCSSCSGGGG-----------------------------------------------------------GGSSSCS
T ss_pred EEEECcchhHHHHH-----------------------------------------------------------hhccCCC
Confidence 77777766531000 0122379
Q ss_pred cEEEEeccccccCCHHHHHHHHHH-hcCCCCeEEEEEEcccccccCcchHHHHHHhhhcC
Q 024311 190 DVILLTEIPYSVTSLKKLYLLIKK-CLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEG 248 (269)
Q Consensus 190 DlIlasD~iY~~~~~~~L~~~l~~-~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g 248 (269)
|+|+... .+ ..++.++..+.+ +|+ |+|++++..-.. ++.+.....+.+.+++.+
T Consensus 154 D~I~~d~-~~--~~~~~~l~~~~r~~Lk-pGG~lv~~d~~~-~~~~~~~~~~~~~l~~~~ 208 (236)
T 2bm8_A 154 PLIFIDN-AH--ANTFNIMKWAVDHLLE-EGDYFIIEDMIP-YWYRYAPQLFSEYLGAFR 208 (236)
T ss_dssp SEEEEES-SC--SSHHHHHHHHHHHTCC-TTCEEEECSCHH-HHHHHCHHHHHHHHHTTT
T ss_pred CEEEECC-ch--HhHHHHHHHHHHhhCC-CCCEEEEEeCcc-cccccCHHHHHHHHHhCc
Confidence 9998633 33 367788888886 998 899988853211 111112236666666654
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=3.7e-08 Score=92.65 Aligned_cols=47 Identities=19% Similarity=0.187 Sum_probs=38.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
.|.+|||++||+|..|+.++.. |+++|++.|.++..+ ..++.|+..|
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av-----~~~~~N~~~N 100 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAI-----EIMKENFKLN 100 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHH-----HHHHHHHHHT
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHH-----HHHHHHHHHh
Confidence 4779999999999999998874 667999999999998 4456666554
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-07 Score=88.53 Aligned_cols=41 Identities=7% Similarity=-0.001 Sum_probs=34.8
Q ss_pred CCCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHh
Q 024311 34 FRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~ 74 (269)
-.+.+|||||||+|.+.+.+|. .++.+|++.|+++.+++.+
T Consensus 172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelA 213 (438)
T 3uwp_A 172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYA 213 (438)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 3678999999999999987774 5776799999999998654
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.1e-08 Score=88.01 Aligned_cols=40 Identities=18% Similarity=0.347 Sum_probs=31.5
Q ss_pred CCCccEEEEeccccc--cCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 186 EGGYDVILLTEIPYS--VTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 186 ~~~fDlIlasD~iY~--~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
.++||+|++..++.. ++....+++.+.+.|+ |+|.+++..
T Consensus 211 ~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~-pgG~L~lg~ 252 (274)
T 1af7_A 211 PGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK-PDGLLFAGH 252 (274)
T ss_dssp CCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE-EEEEEEECT
T ss_pred CCCeeEEEECCchHhCCHHHHHHHHHHHHHHhC-CCcEEEEEe
Confidence 358999999988643 3344788999999999 999998864
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.9e-07 Score=83.64 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=34.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~ 74 (269)
++++|||||||+|.....+++.. ..+|++.|+++.+++.+
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a 118 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVS 118 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHH
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHH
Confidence 56899999999999998887763 46999999999998543
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.7e-07 Score=83.60 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=49.8
Q ss_pred ccEEEEeccccccCCHH--HHHHHHHHhcCCCCeEEEEEEccc--------------cc---------ccCcchHHHHHH
Q 024311 189 YDVILLTEIPYSVTSLK--KLYLLIKKCLRPPYGVVYLATKKN--------------YV---------GFNNAARHLRSL 243 (269)
Q Consensus 189 fDlIlasD~iY~~~~~~--~L~~~l~~~L~~p~g~~~va~k~~--------------~f---------g~~~~~~~F~~~ 243 (269)
||+|+++.++++..... .+++.+++.|+ |+|+++|..... .+ |...+..++.+.
T Consensus 268 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~-pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~l 346 (372)
T 1fp1_D 268 GDAMILKAVCHNWSDEKCIEFLSNCHKALS-PNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKL 346 (372)
T ss_dssp EEEEEEESSGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHH
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHhcC-CCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHH
Confidence 99999999999887766 89999999999 899988862110 00 112256788899
Q ss_pred hhhcCceeEEEEe
Q 024311 244 VDEEGIFGAHLIK 256 (269)
Q Consensus 244 ~~~~g~~~~~~~~ 256 (269)
+++.||-..++..
T Consensus 347 l~~aGf~~~~~~~ 359 (372)
T 1fp1_D 347 SKLSGFSKFQVAC 359 (372)
T ss_dssp HHHTTCSEEEEEE
T ss_pred HHHCCCceEEEEE
Confidence 9999986555543
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=6.6e-07 Score=82.35 Aligned_cols=131 Identities=14% Similarity=0.096 Sum_probs=89.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
..++|+|+|||+|...+.++...+ .++++.|. |++++ ..+.+... ...++|++..
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~-----~a~~~~~~------------------~~~~rv~~~~ 234 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVW-----TAKQHFSF------------------QEEEQIDFQE 234 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHH-----HHHHHSCC--------------------CCSEEEEE
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHH-----HHHHhhhh------------------cccCceeeec
Confidence 457999999999999987776543 57899998 77773 33333211 0134677777
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|.... ....+|+|+
T Consensus 235 gD~~~~-----------------------------------------------------------------~~~~~D~~~ 249 (353)
T 4a6d_A 235 GDFFKD-----------------------------------------------------------------PLPEADLYI 249 (353)
T ss_dssp SCTTTS-----------------------------------------------------------------CCCCCSEEE
T ss_pred CccccC-----------------------------------------------------------------CCCCceEEE
Confidence 764321 123579999
Q ss_pred EeccccccCCH--HHHHHHHHHhcCCCCeEEEEEEcccc-----------c---------ccCcchHHHHHHhhhcCcee
Q 024311 194 LTEIPYSVTSL--KKLYLLIKKCLRPPYGVVYLATKKNY-----------V---------GFNNAARHLRSLVDEEGIFG 251 (269)
Q Consensus 194 asD~iY~~~~~--~~L~~~l~~~L~~p~g~~~va~k~~~-----------f---------g~~~~~~~F~~~~~~~g~~~ 251 (269)
.+.++++.++- ..+++.+++.|+ |+|+++|.-.... + |...+..+|.+.+++.||-.
T Consensus 250 ~~~vlh~~~d~~~~~iL~~~~~al~-pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~ 328 (353)
T 4a6d_A 250 LARVLHDWADGKCSHLLERIYHTCK-PGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRD 328 (353)
T ss_dssp EESSGGGSCHHHHHHHHHHHHHHCC-TTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEE
T ss_pred eeeecccCCHHHHHHHHHHHHhhCC-CCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCce
Confidence 99999987654 467889999998 8999888642110 0 12235688999999999866
Q ss_pred EEEE
Q 024311 252 AHLI 255 (269)
Q Consensus 252 ~~~~ 255 (269)
+++.
T Consensus 329 v~v~ 332 (353)
T 4a6d_A 329 FQFK 332 (353)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=7.2e-07 Score=81.82 Aligned_cols=67 Identities=15% Similarity=0.146 Sum_probs=49.7
Q ss_pred CccEEEEeccccccCCHH--HHHHHHHHhcCCC---CeEEEEEEcccc--------------c---------ccCcchHH
Q 024311 188 GYDVILLTEIPYSVTSLK--KLYLLIKKCLRPP---YGVVYLATKKNY--------------V---------GFNNAARH 239 (269)
Q Consensus 188 ~fDlIlasD~iY~~~~~~--~L~~~l~~~L~~p---~g~~~va~k~~~--------------f---------g~~~~~~~ 239 (269)
.||+|+++.++++..... .+++.+++.|+ | +|+++|...... + |...+..+
T Consensus 251 ~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~-p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e 329 (358)
T 1zg3_A 251 SADAVLLKWVLHDWNDEQSLKILKNSKEAIS-HKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQE 329 (358)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHHTG-GGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHH
T ss_pred CceEEEEcccccCCCHHHHHHHHHHHHHhCC-CCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHH
Confidence 499999999999887755 89999999999 7 898888632110 0 11225678
Q ss_pred HHHHhhhcCceeEEEE
Q 024311 240 LRSLVDEEGIFGAHLI 255 (269)
Q Consensus 240 F~~~~~~~g~~~~~~~ 255 (269)
+.+.+++.||-..++.
T Consensus 330 ~~~ll~~aGf~~~~~~ 345 (358)
T 1zg3_A 330 WEKLIYDAGFSSYKIT 345 (358)
T ss_dssp HHHHHHHTTCCEEEEE
T ss_pred HHHHHHHcCCCeeEEE
Confidence 8899999998655553
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.3e-07 Score=86.92 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=34.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~ 74 (269)
++++|||||||+|..++.+++.. ..+|++.|+++.+++.+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~A 160 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVS 160 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHH
Confidence 56799999999999998888763 46999999999999654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.62 E-value=8.7e-08 Score=82.07 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=33.3
Q ss_pred CCCCEEEEEcCCCCHHHHHHHH-cCC------CeEEEEeCCHHHHHHh
Q 024311 34 FRGKRVLELSCGYGLPGIFACL-KGA------GTVHFQDLSAETIRCT 74 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~-~ga------~~Vv~tD~~~~vl~~~ 74 (269)
..+.+|||+|||+|..+..++. .+. .+|+++|+++++++.+
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a 130 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRS 130 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHH
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHH
Confidence 3678999999999999877765 342 4899999999998554
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.2e-07 Score=86.16 Aligned_cols=73 Identities=16% Similarity=0.178 Sum_probs=52.9
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCC
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPES 96 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~ 96 (269)
..|.+++.+.. ...+.+|||||||+|..++.+|.. +.+|++.|.+++++ ...+.|+..|.
T Consensus 200 ~~l~~~~~~~~-----~~~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai-----~~a~~n~~~ng--------- 259 (369)
T 3bt7_A 200 IQMLEWALDVT-----KGSKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSV-----AAAQYNIAANH--------- 259 (369)
T ss_dssp HHHHHHHHHHT-----TTCCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHH-----HHHHHHHHHTT---------
T ss_pred HHHHHHHHHHh-----hcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHH-----HHHHHHHHHcC---------
Confidence 56666666553 224679999999999999988874 55999999999998 44556665431
Q ss_pred CCCCCccCCCCeeeeecCCCCC
Q 024311 97 SLTPSRQTLAPSVHFYAGDWEE 118 (269)
Q Consensus 97 ~~~~~~~~~~~~v~~~~~dw~~ 118 (269)
+ .+++|+.+|..+
T Consensus 260 --------~-~~v~~~~~d~~~ 272 (369)
T 3bt7_A 260 --------I-DNVQIIRMAAEE 272 (369)
T ss_dssp --------C-CSEEEECCCSHH
T ss_pred --------C-CceEEEECCHHH
Confidence 1 367787777654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=5.6e-08 Score=84.16 Aligned_cols=37 Identities=11% Similarity=-0.054 Sum_probs=29.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCC-HHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLS-AETI 71 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~-~~vl 71 (269)
.+.+|||||||+|...+.++.. ...+|++.|++ +.++
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml 62 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLF 62 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGH
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHH
Confidence 5679999999999999887743 33489999999 6665
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=6.1e-08 Score=91.40 Aligned_cols=37 Identities=14% Similarity=0.312 Sum_probs=29.6
Q ss_pred CCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 187 GGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 187 ~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
++||+|++ |...........++.+.++|+ |+|++++.
T Consensus 287 ~sFDlVis-dgsH~~~d~~~aL~el~rvLK-PGGvlVi~ 323 (419)
T 3sso_A 287 GPFDIVID-DGSHINAHVRTSFAALFPHVR-PGGLYVIE 323 (419)
T ss_dssp CCEEEEEE-CSCCCHHHHHHHHHHHGGGEE-EEEEEEEE
T ss_pred CCccEEEE-CCcccchhHHHHHHHHHHhcC-CCeEEEEE
Confidence 58999997 555555567778888889999 89999887
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.4e-07 Score=87.78 Aligned_cols=46 Identities=24% Similarity=0.441 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|.+|||+|||+|..++.+|.. +..+|++.|+++..+ ..++.|+..
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l-----~~a~~n~~r 148 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRV-----RGLLENVER 148 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHH-----HHHHHHHHH
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHH-----HHHHHHHHH
Confidence 5789999999999999777653 235899999999998 445566544
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-06 Score=82.95 Aligned_cols=45 Identities=13% Similarity=0.167 Sum_probs=35.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CC-CeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
.|.+|||+|||+|..++.++.. +. .+|++.|.++..++ .++.|+.
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~-----~~~~~~~ 305 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMK-----RLKDFVK 305 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHH-----HHHHHHH
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHH-----HHHHHHH
Confidence 5779999999999988776653 32 58999999999884 4455554
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.56 E-value=8.7e-07 Score=83.70 Aligned_cols=46 Identities=20% Similarity=0.284 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|.+|||+|||+|..++.++..+. .+|++.|.++..+ ..++.|+..
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l-----~~~~~~~~~ 292 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRL-----SRVYDNLKR 292 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTH-----HHHHHHHHH
T ss_pred CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHH-----HHHHHHHHH
Confidence 577999999999999987776543 5899999999888 445555543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.7e-07 Score=86.67 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|.+|||+|||+|..++.+|.. +..+|++.|+++..++ -++.|+..
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~-----~~~~n~~r 152 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAK-----ILSENIER 152 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHH-----HHHHHHHH
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHH-----HHHHHHHH
Confidence 5789999999999888776653 3358999999999884 45555544
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-07 Score=85.14 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=34.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~ 74 (269)
++++|||||||+|..++.++..+ ..+|++.|+++++++.+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a 135 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVS 135 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHH
Confidence 56899999999999999888764 46999999999999654
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-06 Score=81.62 Aligned_cols=51 Identities=20% Similarity=0.134 Sum_probs=39.2
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHH
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETI 71 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl 71 (269)
..+++++.+... ..++.+|||+|||+|...+.++.. ...+|++.|+++.++
T Consensus 25 ~~l~~~~~~~~~----~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~ 77 (421)
T 2ih2_A 25 PEVVDFMVSLAE----APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL 77 (421)
T ss_dssp HHHHHHHHHHCC----CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC
T ss_pred HHHHHHHHHhhc----cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHH
Confidence 457777777642 134669999999999999888764 345899999999876
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.7e-06 Score=83.21 Aligned_cols=46 Identities=17% Similarity=0.326 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|.+|||+|||+|..++.+|.. + ..+|++.|+++..++ .++.|+..
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~-----~~~~n~~r 164 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVK-----VLHANISR 164 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHH-----HHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHH-----HHHHHHHH
Confidence 5789999999999998776654 2 358999999999984 44555543
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.49 E-value=4.4e-07 Score=81.29 Aligned_cols=50 Identities=18% Similarity=0.106 Sum_probs=38.8
Q ss_pred HHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 19 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 19 La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+++.+.+.. ....+.+|||+|||+|..+..++..+. +|++.|+++.+++.
T Consensus 16 i~~~i~~~~----~~~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~ 65 (285)
T 1zq9_A 16 IINSIIDKA----ALRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAE 65 (285)
T ss_dssp HHHHHHHHT----CCCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHH
T ss_pred HHHHHHHhc----CCCCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHH
Confidence 445555443 123678999999999999988888776 89999999999843
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.9e-07 Score=85.07 Aligned_cols=40 Identities=20% Similarity=0.103 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~ 74 (269)
++++|||||||+|..++.++.. +..+|++.|+++.+++.+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~A 148 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVA 148 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHH
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHH
Confidence 4679999999999999888876 346999999999998543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1e-06 Score=77.84 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
...+|||||||+|.+++... ++.+|+++|+++.+++.
T Consensus 105 ~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ 141 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDV 141 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHH
T ss_pred CCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHH
Confidence 56799999999999999877 66699999999999944
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.47 E-value=3.2e-07 Score=75.19 Aligned_cols=64 Identities=25% Similarity=0.339 Sum_probs=49.9
Q ss_pred CCCCccEEEEecccccc-CCHHHHHHHHHHhcCCCCeEEEEEEccccc----ccCcchHHHHHHhhhcCc
Q 024311 185 GEGGYDVILLTEIPYSV-TSLKKLYLLIKKCLRPPYGVVYLATKKNYV----GFNNAARHLRSLVDEEGI 249 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~-~~~~~L~~~l~~~L~~p~g~~~va~k~~~f----g~~~~~~~F~~~~~~~g~ 249 (269)
..++||+|+++.++++. ...+.+++.++++|+ |+|++++....... .......++.+.+++.||
T Consensus 60 ~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 60 KESSFDIILSGLVPGSTTLHSAEILAEIARILR-PGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp CSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEE-EEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred CCCCEeEEEECChhhhcccCHHHHHHHHHHHCC-CCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 34689999999999987 788999999999999 89999986432110 001246789999999998
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=8.9e-07 Score=79.95 Aligned_cols=62 Identities=16% Similarity=0.154 Sum_probs=42.9
Q ss_pred CCccEEEEeccccc------------cCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEE
Q 024311 187 GGYDVILLTEIPYS------------VTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 187 ~~fDlIlasD~iY~------------~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
.+||+|++ |+..+ ...++.+++.+.++|+ |+|.+++..-.. +..+++...+++.||..+++
T Consensus 122 ~~fD~Vvs-n~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~Lk-pGG~~v~~~~~~-----~~~~~l~~~l~~~GF~~v~~ 194 (290)
T 2xyq_A 122 NKWDLIIS-DMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLA-LGGSIAVKITEH-----SWNADLYKLMGHFSWWTAFV 194 (290)
T ss_dssp SCEEEEEE-CCCCCC---CCSCCCCCCTHHHHHHHHHHHHEE-EEEEEEEEECSS-----SCCHHHHHHHTTEEEEEEEE
T ss_pred CcccEEEE-cCCccccccccccccchHHHHHHHHHHHHHhcC-CCcEEEEEEecc-----CCHHHHHHHHHHcCCcEEEE
Confidence 47999997 33211 1235678889999999 899988864332 23568999999988755555
Q ss_pred E
Q 024311 255 I 255 (269)
Q Consensus 255 ~ 255 (269)
+
T Consensus 195 ~ 195 (290)
T 2xyq_A 195 T 195 (290)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.1e-06 Score=80.34 Aligned_cols=40 Identities=13% Similarity=0.021 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC------CeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA------GTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga------~~Vv~tD~~~~vl~~~ 74 (269)
.+.+|||+|||+|...+.++.... .+|+++|+++.+++.+
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a 175 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLA 175 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHH
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHH
Confidence 567999999999998887775432 4899999999998554
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.7e-07 Score=83.48 Aligned_cols=38 Identities=18% Similarity=0.103 Sum_probs=31.7
Q ss_pred CEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHh
Q 024311 37 KRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~ 74 (269)
.+|||||||+|.....+++ ....+|++.|+++.+++.+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~A 129 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLS 129 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHH
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHH
Confidence 4999999999999988776 4344899999999998543
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1e-06 Score=78.66 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=32.9
Q ss_pred CCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHH
Q 024311 36 GKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRC 73 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~ 73 (269)
..+|||||||+|.+++.++.. +..+|++.|+|+.+++.
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~ 171 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGF 171 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHH
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHH
Confidence 569999999999999887765 56699999999999944
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-06 Score=82.06 Aligned_cols=53 Identities=23% Similarity=0.168 Sum_probs=39.8
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCC---------------------------------------
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--------------------------------------- 58 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga--------------------------------------- 58 (269)
.||..|.... ....+.+|||++||+|...+.||..++
T Consensus 182 ~lAa~ll~~~----~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 257 (385)
T 3ldu_A 182 TLAAGLIYLT----PWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK 257 (385)
T ss_dssp HHHHHHHHTS----CCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHhh----CCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence 4666665542 123678999999999999998887543
Q ss_pred CeEEEEeCCHHHHHHh
Q 024311 59 GTVHFQDLSAETIRCT 74 (269)
Q Consensus 59 ~~Vv~tD~~~~vl~~~ 74 (269)
.+|++.|+++.+++.+
T Consensus 258 ~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIA 273 (385)
T ss_dssp CCEEEEESCHHHHHHH
T ss_pred ceEEEEECCHHHHHHH
Confidence 3699999999999543
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-06 Score=79.08 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
..+.+|||+|||+|..++.++..+. +|++.|+++.+++.
T Consensus 41 ~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~ 79 (299)
T 2h1r_A 41 KSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISE 79 (299)
T ss_dssp CTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHH
T ss_pred CCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHH
Confidence 3678999999999999998888765 89999999999843
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.3e-06 Score=76.54 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=34.5
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeC
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDL 66 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~ 66 (269)
.++..|.+.+.+. ....+.+|||||||+|..+..++.. .+|++.|.
T Consensus 66 R~a~KL~~i~~~~-----~~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~ 111 (305)
T 2p41_A 66 RGSAKLRWFVERN-----LVTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKG 111 (305)
T ss_dssp THHHHHHHHHHTT-----SSCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEE
T ss_pred cHHHHHHHHHHcC-----CCCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEec
Confidence 3555666555441 2335789999999999999888877 37999998
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.5e-06 Score=79.99 Aligned_cols=59 Identities=20% Similarity=0.155 Sum_probs=41.8
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCC---------------------------------------
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--------------------------------------- 58 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga--------------------------------------- 58 (269)
.||..|.... ..-.+..|||.+||+|...+.||..++
T Consensus 188 ~lAa~ll~l~----~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 263 (393)
T 3k0b_A 188 TMAAALVLLT----SWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQP 263 (393)
T ss_dssp HHHHHHHHHS----CCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHh----CCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCC
Confidence 3555555442 123577999999999999988887543
Q ss_pred CeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 59 GTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 59 ~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.+|++.|+++.+++. .+.|+..
T Consensus 264 ~~V~GvDid~~al~~-----Ar~Na~~ 285 (393)
T 3k0b_A 264 LNIIGGDIDARLIEI-----AKQNAVE 285 (393)
T ss_dssp CCEEEEESCHHHHHH-----HHHHHHH
T ss_pred ceEEEEECCHHHHHH-----HHHHHHH
Confidence 259999999999954 4555543
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.35 E-value=8.6e-07 Score=78.68 Aligned_cols=39 Identities=10% Similarity=-0.121 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~ 74 (269)
.+++|||||||+|.....++..+ .+|++.|+++.+++.+
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~a 110 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSF 110 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGG
T ss_pred CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHH
Confidence 56799999999998888777666 7999999999998654
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.34 E-value=6e-06 Score=77.27 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=42.5
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCC---------------------------------------
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA--------------------------------------- 58 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga--------------------------------------- 58 (269)
.||..|.... ..-.+..|||.+||+|...+.||..+.
T Consensus 181 ~LAaall~l~----~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 256 (384)
T 3ldg_A 181 NMAAAIILLS----NWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ 256 (384)
T ss_dssp HHHHHHHHHT----TCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHh----CCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence 4666555542 123577999999999999998887543
Q ss_pred CeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 59 GTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 59 ~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.+|++.|+++.+++. .+.|+..
T Consensus 257 ~~v~GvDid~~al~~-----Ar~Na~~ 278 (384)
T 3ldg_A 257 LDISGFDFDGRMVEI-----ARKNARE 278 (384)
T ss_dssp CCEEEEESCHHHHHH-----HHHHHHH
T ss_pred ceEEEEECCHHHHHH-----HHHHHHH
Confidence 259999999999944 4555543
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.8e-06 Score=75.92 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=33.6
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
..+.+|||+|||+|..+..++..+. +|++.|+++.++..
T Consensus 49 ~~~~~VLEIG~G~G~lT~~La~~~~-~V~aVEid~~li~~ 87 (295)
T 3gru_A 49 TKDDVVLEIGLGKGILTEELAKNAK-KVYVIEIDKSLEPY 87 (295)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCGGGHHH
T ss_pred CCcCEEEEECCCchHHHHHHHhcCC-EEEEEECCHHHHHH
Confidence 3678999999999999988887754 99999999998843
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-06 Score=77.24 Aligned_cols=48 Identities=19% Similarity=0.163 Sum_probs=36.6
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA 68 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~ 68 (269)
.++.-|.+.+... ....+.+|||||||+|..+..++.. .+|++.|+++
T Consensus 58 R~a~KL~~i~~~~-----~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~ 105 (265)
T 2oxt_A 58 RGTAKLAWMEERG-----YVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT 105 (265)
T ss_dssp THHHHHHHHHHHT-----SCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC
T ss_pred hHHHHHHHHHHcC-----CCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch
Confidence 4555565555442 3346889999999999999888877 4899999987
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.8e-06 Score=77.25 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=35.6
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA 68 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~ 68 (269)
.++..|.+.+.. .....+.+|||||||+|..+..++.. .+|++.|+++
T Consensus 66 R~a~KL~~i~~~-----~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~ 113 (276)
T 2wa2_A 66 RGTAKLAWIDER-----GGVELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT 113 (276)
T ss_dssp HHHHHHHHHHHT-----TSCCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC
T ss_pred hHHHHHHHHHHc-----CCCCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch
Confidence 344445444433 12346889999999999999888877 4899999987
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.25 E-value=7.7e-06 Score=71.43 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=38.9
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
.+++.+.+.. ....+.+|||+|||+|..+..++..+. +|++.|+++.+++
T Consensus 17 ~~~~~i~~~~----~~~~~~~VLDiG~G~G~lt~~l~~~~~-~v~~vD~~~~~~~ 66 (244)
T 1qam_A 17 HNIDKIMTNI----RLNEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCK 66 (244)
T ss_dssp HHHHHHHTTC----CCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHH
T ss_pred HHHHHHHHhC----CCCCCCEEEEEeCCchHHHHHHHHcCC-eEEEEECCHHHHH
Confidence 4455555442 123678999999999999998888874 8999999999884
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.24 E-value=9e-07 Score=78.41 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA 68 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~ 68 (269)
.+.+|||+|||+|..++.+|..|. +|++.|.++
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~ 115 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHP 115 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCH
T ss_pred CcCeEEEeeCccCHHHHHHHHhCC-EEEEEECCh
Confidence 467999999999999999998876 899999999
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=2.4e-06 Score=84.80 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=34.3
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHcCC---C--eEEEEeCCHHHHHHhhHHHHHHH
Q 024311 32 LSFRGKRVLELSCGYGLPGIFACLKGA---G--TVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~aa~~ga---~--~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
...+++.||++|||+|+++..++++++ . +|++.+-|+-.. .++.++..|
T Consensus 354 ~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~--~a~~~v~~N 407 (637)
T 4gqb_A 354 KDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV--VTLENWQFE 407 (637)
T ss_dssp TTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH--HHHHHHHHH
T ss_pred ccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH--HHHHHHHhc
Confidence 355778999999999999766555443 3 689999998543 334455444
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.5e-06 Score=79.55 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=33.8
Q ss_pred CCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 36 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
|.+|||||||+|..++.++..++ +|++.|.++.+++.
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~ 130 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVA 130 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHH
Confidence 89999999999999999888876 99999999999844
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.6e-05 Score=75.42 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=38.2
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc--------------CCCeEEEEeCCHHHHHHh
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--------------GAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~--------------ga~~Vv~tD~~~~vl~~~ 74 (269)
.++++|.+... ...+.+|||.|||+|...+.++.. ...++++.|+++.+++.+
T Consensus 158 ~v~~~mv~~l~----~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA 224 (445)
T 2okc_A 158 PLIQAMVDCIN----PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA 224 (445)
T ss_dssp HHHHHHHHHHC----CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred HHHHHHHHHhC----CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHH
Confidence 45666665542 235779999999999888776642 224799999999998554
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.06 E-value=8.7e-05 Score=67.31 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=36.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc--CCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK--GAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~--ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|.+|||+|||+|..++.++.. +..+|++.|.++..+ ..++.|+..
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l-----~~~~~n~~r 149 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRL-----ASMATLLAR 149 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHH-----HHHHHHHHH
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHH-----HHHHHHHHH
Confidence 5789999999999888776653 346899999999988 445566543
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.02 E-value=2.5e-05 Score=68.60 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=39.7
Q ss_pred HHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 19 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 19 La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+++.+.+.. ....+.+|||+|||+|..+..++..|+.+|++.|+++.+++.
T Consensus 19 i~~~iv~~~----~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~ 69 (249)
T 3ftd_A 19 VLKKIAEEL----NIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVEN 69 (249)
T ss_dssp HHHHHHHHT----TCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHH
T ss_pred HHHHHHHhc----CCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence 344555443 123678999999999999999988876799999999998843
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.7e-05 Score=68.59 Aligned_cols=36 Identities=22% Similarity=0.142 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
.+ +|||+|||+|..+..++..++ +|++.|+++.+++
T Consensus 47 ~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~ 82 (271)
T 3fut_A 47 TG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRP 82 (271)
T ss_dssp CS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHH
T ss_pred CC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHH
Confidence 56 999999999999999888875 8999999999884
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00011 Score=65.95 Aligned_cols=37 Identities=8% Similarity=-0.053 Sum_probs=29.8
Q ss_pred EEEEeccccccCCH---HHHHHHHHHhcCCCCeEEEEEEcc
Q 024311 191 VILLTEIPYSVTSL---KKLYLLIKKCLRPPYGVVYLATKK 228 (269)
Q Consensus 191 lIlasD~iY~~~~~---~~L~~~l~~~L~~p~g~~~va~k~ 228 (269)
.|++.-++++.... ..+++.+.+.|+ |+|.+.++...
T Consensus 163 av~~~avLH~l~d~~~p~~~l~~l~~~L~-PGG~Lvls~~~ 202 (277)
T 3giw_A 163 ALTVIAIVHFVLDEDDAVGIVRRLLEPLP-SGSYLAMSIGT 202 (277)
T ss_dssp EEEEESCGGGSCGGGCHHHHHHHHHTTSC-TTCEEEEEEEC
T ss_pred hHHhhhhHhcCCchhhHHHHHHHHHHhCC-CCcEEEEEecc
Confidence 57778888887774 578999999998 99999988654
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=97.94 E-value=2.4e-05 Score=69.13 Aligned_cols=38 Identities=8% Similarity=0.201 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||+|||+|..+..++..+. +|++.|+++++++.
T Consensus 29 ~~~~VLEIG~G~G~lt~~La~~~~-~V~avEid~~~~~~ 66 (255)
T 3tqs_A 29 KTDTLVEIGPGRGALTDYLLTECD-NLALVEIDRDLVAF 66 (255)
T ss_dssp TTCEEEEECCTTTTTHHHHTTTSS-EEEEEECCHHHHHH
T ss_pred CcCEEEEEcccccHHHHHHHHhCC-EEEEEECCHHHHHH
Confidence 578999999999999999888874 89999999999843
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.90 E-value=2.9e-06 Score=76.25 Aligned_cols=153 Identities=10% Similarity=0.007 Sum_probs=101.4
Q ss_pred CCCCccCc-eeecc----HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHH
Q 024311 3 SSKPDGFL-KCWES----SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVP 77 (269)
Q Consensus 3 ~g~ye~G~-~vW~a----s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~ 77 (269)
+|-|+.|. ++|.+ .-.|..|+.-.. .+.+..+||+=+|+|..|+.+.+ ++.++++.|.++..+ .
T Consensus 59 tgE~~~GI~rl~~~~~~~p~~l~~yf~~l~-----~~n~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~-----~ 127 (283)
T 2oo3_A 59 TEEYKEGINPVWLDRENLPSLFLEYISVIK-----QINLNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEY-----N 127 (283)
T ss_dssp CCGGGGTHHHHHHTGGGSCGGGHHHHHHHH-----HHSSSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHH-----H
T ss_pred cHHHHHHHHHHHhcccCCcHHHHHHHHHHH-----HhcCCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHH-----H
Confidence 56677775 56762 223455655432 14567899999999999999888 557999999999887 5
Q ss_pred HHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcc
Q 024311 78 NVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSI 157 (269)
Q Consensus 78 Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 157 (269)
.++.|+.. ..+++++..|-... +.
T Consensus 128 ~L~~Nl~~--------------------~~~~~V~~~D~~~~---L~--------------------------------- 151 (283)
T 2oo3_A 128 FLLKLPHF--------------------NKKVYVNHTDGVSK---LN--------------------------------- 151 (283)
T ss_dssp HHTTSCCT--------------------TSCEEEECSCHHHH---HH---------------------------------
T ss_pred HHHHHhCc--------------------CCcEEEEeCcHHHH---HH---------------------------------
Confidence 56666521 12344444431110 00
Q ss_pred cccCCcccccccccCchhhhhhcccccCCCCccEEEEeccccc-cCCHHHHHHHHHHh-cCCCCeEEEEEEcccccccCc
Q 024311 158 IGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYS-VTSLKKLYLLIKKC-LRPPYGVVYLATKKNYVGFNN 235 (269)
Q Consensus 158 ~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~-~~~~~~L~~~l~~~-L~~p~g~~~va~k~~~fg~~~ 235 (269)
.......+||+|+. |..|. ...++.+++.|... .+.|+|++.|-++... ..
T Consensus 152 -----------------------~l~~~~~~fdLVfi-DPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~---~~ 204 (283)
T 2oo3_A 152 -----------------------ALLPPPEKRGLIFI-DPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN---KA 204 (283)
T ss_dssp -----------------------HHCSCTTSCEEEEE-CCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESS---HH
T ss_pred -----------------------HhcCCCCCccEEEE-CCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccc---hH
Confidence 00012347999999 99999 46888888888773 3348898877765532 23
Q ss_pred chHHHHHHhhhcCc
Q 024311 236 AARHLRSLVDEEGI 249 (269)
Q Consensus 236 ~~~~F~~~~~~~g~ 249 (269)
..+.|.+.+++.|.
T Consensus 205 ~~~~~~~~l~~~~~ 218 (283)
T 2oo3_A 205 WTEQFLRKMREISS 218 (283)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhcCC
Confidence 57899999998875
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.88 E-value=5.5e-07 Score=78.48 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
.+.+|||+|||+|..++.++..+ .+|++.|+++.+++
T Consensus 29 ~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~ 65 (245)
T 1yub_A 29 ETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFN 65 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHH
Confidence 67799999999999998888887 48999999998773
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.9e-05 Score=64.45 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=45.3
Q ss_pred CCCCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCH-HHHHHHH-cCCCeEEEEeCCHHHH
Q 024311 3 SSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGL-PGIFACL-KGAGTVHFQDLSAETI 71 (269)
Q Consensus 3 ~g~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl-~gl~aa~-~ga~~Vv~tD~~~~vl 71 (269)
||---.|++.|+ .|++||.+.. ..+.+|||+|||.|. .+..++. .|. .|++||+++..+
T Consensus 12 ~~~~~~~~~m~e---~LaeYI~~~~------~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av 72 (153)
T 2k4m_A 12 SGLVPRGSHMWN---DLAVYIIRCS------GPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHG 72 (153)
T ss_dssp CCCCCCCCHHHH---HHHHHHHHHS------CSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSST
T ss_pred CCcccchhhHHH---HHHHHHHhcC------CCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCcccc
Confidence 344455677754 5999998873 235699999999994 8888876 887 899999998644
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.83 E-value=2.3e-05 Score=78.35 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc----C----------CCeEEEEeCCHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK----G----------AGTVHFQDLSAETI 71 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~----g----------a~~Vv~tD~~~~vl 71 (269)
+++.||++|||+|.++..++.+ + +.+|++.|-|+...
T Consensus 409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~ 459 (745)
T 3ua3_A 409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAI 459 (745)
T ss_dssp SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHH
Confidence 4679999999999998543221 2 34999999998655
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=6e-05 Score=68.21 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+.+|||+|||+|..++.++... ..+|++.|.++++++ ..+.|+..+ ..++.++.
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~-----~A~~~~~~~-------------------g~~v~~v~ 81 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLR-----IAEEKLKEF-------------------SDRVSLFK 81 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHH-----HHHHHTGGG-------------------TTTEEEEE
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHH-----HHHHHHHhc-------------------CCcEEEEE
Confidence 57899999999999998877653 459999999999984 344444221 13577888
Q ss_pred CCCCCcc
Q 024311 114 GDWEELP 120 (269)
Q Consensus 114 ~dw~~~~ 120 (269)
+|...++
T Consensus 82 ~d~~~l~ 88 (301)
T 1m6y_A 82 VSYREAD 88 (301)
T ss_dssp CCGGGHH
T ss_pred CCHHHHH
Confidence 8876654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00012 Score=73.44 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=25.3
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK 56 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ 56 (269)
.||..|..... .-.+..|||.+||+|...+.||..
T Consensus 177 ~LAa~ll~~~~----~~~~~~llDP~CGSGt~lIeAa~~ 211 (703)
T 3v97_A 177 TLAAAIVMRSG----WQPGTPLLDPMCGSGTLLIEAAML 211 (703)
T ss_dssp HHHHHHHHHTT----CCTTSCEEETTCTTSHHHHHHHHH
T ss_pred HHHHHHHHhhC----CCCCCeEEecCCCCcHHHHHHHHH
Confidence 46666655431 225679999999999999888764
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.76 E-value=2.3e-05 Score=69.46 Aligned_cols=36 Identities=14% Similarity=0.215 Sum_probs=32.5
Q ss_pred CEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 37 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.+|||+|||+|..++.++..|+ +|++.|.++.+...
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l 125 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAAL 125 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHH
T ss_pred CEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHH
Confidence 7999999999999999998887 79999999987643
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.69 E-value=9.6e-05 Score=66.11 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCC---eEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAG---TVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~---~Vv~tD~~~~vl~~ 73 (269)
.+.+|||+|||+|..+..++..+.. +|++.|+++.+++.
T Consensus 42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~ 83 (279)
T 3uzu_A 42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGR 83 (279)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHH
T ss_pred CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHH
Confidence 6789999999999999888876652 29999999999854
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00022 Score=69.47 Aligned_cols=52 Identities=17% Similarity=0.013 Sum_probs=36.3
Q ss_pred HHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc----C---------------CCeEEEEeCCHHHHHHh
Q 024311 19 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK----G---------------AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 19 La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~----g---------------a~~Vv~tD~~~~vl~~~ 74 (269)
++++|.+... ...+.+|||.+||+|...+.++.. + ..++++.|+++.+++.+
T Consensus 157 iv~~mv~~l~----p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA 227 (541)
T 2ar0_A 157 LIKTIIHLLK----PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 227 (541)
T ss_dssp HHHHHHHHHC----CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred HHHHHHHHhc----cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence 4555554431 235779999999999877766542 1 13799999999998654
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00025 Score=63.33 Aligned_cols=60 Identities=20% Similarity=0.142 Sum_probs=45.3
Q ss_pred CCCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCH
Q 024311 4 SKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSA 68 (269)
Q Consensus 4 g~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~ 68 (269)
|.-.+|.-+=.|+.-|.+...+. ..-.+.+|||||||+|--+-+|+.. ++..|++.|..-
T Consensus 48 ~~~~~~~YrSRaA~KL~ei~ek~-----~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGv 108 (277)
T 3evf_A 48 GKVDTGVAVSRGTAKLRWFHERG-----YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR 108 (277)
T ss_dssp TCCSSCBCSSTHHHHHHHHHHTT-----SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred CCccCCCccccHHHHHHHHHHhC-----CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEec
Confidence 44455666778899999888874 2336679999999999999877654 666788888753
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.59 E-value=9.1e-05 Score=65.22 Aligned_cols=47 Identities=11% Similarity=0.184 Sum_probs=34.7
Q ss_pred HHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCe--EEEEeCCHHHHH
Q 024311 19 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGT--VHFQDLSAETIR 72 (269)
Q Consensus 19 La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~--Vv~tD~~~~vl~ 72 (269)
+++.+.+... ...+.+|||+|||+|..+. ++. +. + |++.|+++.++.
T Consensus 9 i~~~iv~~~~----~~~~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~ 57 (252)
T 1qyr_A 9 VIDSIVSAIN----PQKGQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAA 57 (252)
T ss_dssp HHHHHHHHHC----CCTTCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHH
T ss_pred HHHHHHHhcC----CCCcCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHH
Confidence 4455554431 2357799999999999888 654 43 6 999999999983
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0018 Score=63.11 Aligned_cols=41 Identities=17% Similarity=0.042 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc----CCCeEEEEeCCHHHHHHh
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK----GAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~----ga~~Vv~tD~~~~vl~~~ 74 (269)
..+.+|||.+||+|..-+.++.. +..+++++|+++.+++.+
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA 264 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLA 264 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHH
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHH
Confidence 46789999999999776666543 345899999999988654
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00045 Score=70.14 Aligned_cols=39 Identities=8% Similarity=-0.006 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC----CCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG----AGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g----a~~Vv~tD~~~~vl~~ 73 (269)
.+.+|||.|||+|...+.++... ..++++.|+++.+++.
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~L 363 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLEL 363 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHH
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHH
Confidence 57899999999998888877643 2479999999988754
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0012 Score=56.39 Aligned_cols=37 Identities=16% Similarity=0.095 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+.++|||+||| ..++.+|+....+|+..|.+++..+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ 66 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARM 66 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHH
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 45699999985 67788777533599999999988743
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0012 Score=64.25 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcc-cccccCcchHHHHHHhhhcCcee
Q 024311 206 KLYLLIKKCLRPPYGVVYLATKK-NYVGFNNAARHLRSLVDEEGIFG 251 (269)
Q Consensus 206 ~L~~~l~~~L~~p~g~~~va~k~-~~fg~~~~~~~F~~~~~~~g~~~ 251 (269)
.+++.+.++|+ |+|++.+.... .-|+.+++...+.+.+-+.+.+.
T Consensus 376 ~Fl~~~l~~Lk-~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~l~ 421 (544)
T 3khk_A 376 AWMLHMLYHLA-PTGSMALLLANGSMSSNTNNEGEIRKTLVEQDLVE 421 (544)
T ss_dssp HHHHHHHHTEE-EEEEEEEEEETHHHHCCGGGHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhc-cCceEEEEecchhhhcCcchHHHHHHHHHhCCcHh
Confidence 45666667788 78887666544 33432246678888888877643
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0044 Score=55.83 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=33.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~ 74 (269)
..++||=||-|.|...-.+.+. +..+|++.|++++|++.+
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a 123 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFC 123 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHH
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHH
Confidence 4679999999999777666654 457999999999999765
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0045 Score=57.55 Aligned_cols=35 Identities=14% Similarity=-0.077 Sum_probs=30.4
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA 68 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~ 68 (269)
.-.|.+||||||.+|--+-.++..|+ +|++.|..+
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~ 243 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGP 243 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSC
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhh
Confidence 44799999999999988888888887 899999854
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00093 Score=59.74 Aligned_cols=50 Identities=26% Similarity=0.209 Sum_probs=40.7
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.|++.+.... ...|..|||++||+|.++++|+..|. ++++.|+++++++.
T Consensus 223 ~l~~~~i~~~-----~~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~ 272 (297)
T 2zig_A 223 ELAERLVRMF-----SFVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQL 272 (297)
T ss_dssp HHHHHHHHHH-----CCTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred HHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence 4555555442 23688999999999999999999987 89999999999844
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0042 Score=54.69 Aligned_cols=66 Identities=18% Similarity=0.236 Sum_probs=40.8
Q ss_pred CCccEEEEecccccc----CC-HHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEEEeee-cC
Q 024311 187 GGYDVILLTEIPYSV----TS-LKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEM-TD 260 (269)
Q Consensus 187 ~~fDlIlasD~iY~~----~~-~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~~~~~-~~ 260 (269)
..||+|+. |. +.+ +. .+.+++.+.++|+ |+|++.. + . ....+...+++.||-..++ .-+ .+
T Consensus 172 ~~~D~ifl-D~-fsp~~~p~lw~~~~l~~l~~~L~-pGG~l~t-y-----s---aa~~vrr~L~~aGF~v~~~-~g~~~k 238 (257)
T 2qy6_A 172 QKVDAWFL-DG-FAPAKNPDMWTQNLFNAMARLAR-PGGTLAT-F-----T---SAGFVRRGLQEAGFTMQKR-KGFGRK 238 (257)
T ss_dssp TCEEEEEE-CS-SCTTTCGGGCCHHHHHHHHHHEE-EEEEEEE-S-----C---CBHHHHHHHHHHTEEEEEE-CCSTTC
T ss_pred CeEEEEEE-CC-CCcccChhhcCHHHHHHHHHHcC-CCcEEEE-E-----e---CCHHHHHHHHHCCCEEEeC-CCCCCC
Confidence 37999998 64 222 21 4568999999999 8887652 1 1 1236778888899743333 222 24
Q ss_pred cceEE
Q 024311 261 RDIWK 265 (269)
Q Consensus 261 ~~i~~ 265 (269)
+++-+
T Consensus 239 r~m~~ 243 (257)
T 2qy6_A 239 REMLC 243 (257)
T ss_dssp CCEEE
T ss_pred CceEE
Confidence 55443
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0044 Score=54.23 Aligned_cols=50 Identities=26% Similarity=0.218 Sum_probs=40.1
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.|++.+.... ...|..|||..||+|-++++|...|. ++++.|+++..++.
T Consensus 200 ~l~~~~i~~~-----~~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~ 249 (260)
T 1g60_A 200 DLIERIIRAS-----SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQ 249 (260)
T ss_dssp HHHHHHHHHH-----CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred HHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence 4555554432 24678999999999999999999987 89999999988854
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.024 Score=52.38 Aligned_cols=59 Identities=24% Similarity=0.198 Sum_probs=41.0
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.||..-+..|.- -.|.+|||+.||.|-=++.++..+. ..|++.|.++.-+ .-++.|+..
T Consensus 135 ~aS~l~~~~L~~--------~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~-----~~l~~~l~r 194 (359)
T 4fzv_A 135 AASLLPVLALGL--------QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRI-----ARLQKILHS 194 (359)
T ss_dssp GGGHHHHHHHCC--------CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHhCC--------CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHH-----HHHHHHHHH
Confidence 466666655532 2577999999999977766665544 4799999999876 344555543
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.068 Score=48.31 Aligned_cols=48 Identities=19% Similarity=0.115 Sum_probs=32.2
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCC---HHH-HHHHHcCCC--eEEEEeCCH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYG---LPG-IFACLKGAG--TVHFQDLSA 68 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtG---l~g-l~aa~~ga~--~Vv~tD~~~ 68 (269)
.|++||.+.. -..-.|.+|||||||.- .|| .++.+.++. .|+..|+++
T Consensus 95 qlcqyl~~~~---~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~ 148 (344)
T 3r24_A 95 QLCQYLNTLT---LAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLND 148 (344)
T ss_dssp HHHHHHTTSC---CCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSC
T ss_pred HHHHHhcccc---EeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcc
Confidence 5788885531 23447899999999542 344 455555553 899999977
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.029 Score=51.23 Aligned_cols=42 Identities=26% Similarity=0.070 Sum_probs=35.2
Q ss_pred CEEEEEcCCCCHHHHHHHHcC--CCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 37 KRVLELSCGYGLPGIFACLKG--AGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~g--a~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
.+||||.||+|..++.+...| ++.|++.|+++..+ ...+.|.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~-----~~~~~N~ 46 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVAN-----EVYKYNF 46 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHH-----HHHHHHC
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHH-----HHHHHhc
Confidence 589999999999999998888 55799999999887 4455554
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.011 Score=55.05 Aligned_cols=40 Identities=23% Similarity=0.095 Sum_probs=34.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~ 74 (269)
..++||=||-|.|...-.+.+...++|++.|++++|++.+
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~a 244 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGC 244 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHH
Confidence 4689999999999888777777778999999999999654
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.033 Score=51.56 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=35.3
Q ss_pred CEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 37 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
.+||||-||+|.+++-+...|...|.+.|+++..+ ...+.|.
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~-----~t~~~N~ 44 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAI-----NTHAINF 44 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHH-----HHHHHHC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHH-----HHHHHhC
Confidence 48999999999999999889997788999999876 4455554
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.032 Score=49.30 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=32.4
Q ss_pred CCCCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc
Q 024311 3 SSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK 56 (269)
Q Consensus 3 ~g~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ 56 (269)
.|.-.+|--.=.|+.-|.+.-.+. ..-.|.+||||||+.|-=+-+|+..
T Consensus 46 ~g~~~~g~yRSRAayKL~EIdeK~-----likpg~~VVDLGaAPGGWSQvAa~~ 94 (269)
T 2px2_A 46 EGNKVGGHPVSRGTAKLRWLVERR-----FVQPIGKVVDLGCGRGGWSYYAATM 94 (269)
T ss_dssp ----CCSCCSSTHHHHHHHHHHTT-----SCCCCEEEEEETCTTSHHHHHHTTS
T ss_pred cCCCcCCCcccHHHHHHHHHHHcC-----CCCCCCEEEEcCCCCCHHHHHHhhh
Confidence 344455555556677776555442 3446889999999999888888765
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.069 Score=49.52 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=32.2
Q ss_pred CCCCccEEEEeccccccC--------------------------------------CHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 185 GEGGYDVILLTEIPYSVT--------------------------------------SLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~--------------------------------------~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
..+.||+|+++=++++.+ ++..+++...+.|+ |+|++++..
T Consensus 147 P~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~-pGG~mvl~~ 225 (374)
T 3b5i_A 147 PARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVK-RGGAMFLVC 225 (374)
T ss_dssp CTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred CCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEE
Confidence 467999999999999976 33346777788898 889877663
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.058 Score=48.10 Aligned_cols=33 Identities=18% Similarity=-0.047 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc------CCCeEEEEeCC
Q 024311 35 RGKRVLELSCGYGLPGIFACLK------GAGTVHFQDLS 67 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~------ga~~Vv~tD~~ 67 (269)
..++|||+|+..|..++.++.. ...+|++.|..
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~Dtf 144 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSF 144 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECS
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECC
Confidence 3559999999999988775532 13589999963
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.11 Score=46.54 Aligned_cols=37 Identities=16% Similarity=0.046 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
.+..+||.+||.|--+..++..+. +|++.|.+++++.
T Consensus 22 ~gg~~VD~T~G~GGHS~~il~~~g-~VigiD~Dp~Ai~ 58 (285)
T 1wg8_A 22 PGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVA 58 (285)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 577999999999988887777654 8999999999984
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.23 Score=46.21 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=15.7
Q ss_pred CCEEEEEcCCCCHHHHHHH
Q 024311 36 GKRVLELSCGYGLPGIFAC 54 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa 54 (269)
..+|+||||++|-.++.+.
T Consensus 53 ~~~IaDlGCssG~NT~~~v 71 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTV 71 (384)
T ss_dssp EEEEEEETCCSSHHHHHHH
T ss_pred ceEEEecCCCCCchHHHHH
Confidence 5799999999998876654
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=94.51 E-value=0.065 Score=48.64 Aligned_cols=46 Identities=20% Similarity=0.127 Sum_probs=39.0
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
..++.+||||.||+|..++.+.+.|.+.|++.|+++..+ ...+.|.
T Consensus 8 ~~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~-----~t~~~N~ 53 (327)
T 2c7p_A 8 QLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQ-----EVYEMNF 53 (327)
T ss_dssp TTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHH-----HHHHHHH
T ss_pred ccCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHH-----HHHHHHc
Confidence 346789999999999999999999998899999999877 4566665
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.88 E-value=1.7 Score=41.79 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=35.4
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc--------------CCCeEEEEeCCHHHHHHh
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK--------------GAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~--------------ga~~Vv~tD~~~~vl~~~ 74 (269)
.++++|.+... ...+.+|+|-.||+|..-+.+... ....+++.|.++.+.+.+
T Consensus 204 ~Vv~lmv~l~~----p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la 270 (530)
T 3ufb_A 204 PVVRFMVEVMD----PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLV 270 (530)
T ss_dssp HHHHHHHHHHC----CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHH
T ss_pred HHHHHHHHhhc----cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHH
Confidence 45566665542 235679999999999554444321 013699999999988654
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=93.57 E-value=1.1 Score=40.46 Aligned_cols=44 Identities=14% Similarity=-0.023 Sum_probs=35.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC--CeE-EEEeCCHHHHHHhhHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA--GTV-HFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga--~~V-v~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
+..+|+||-||+|..++.+...|. ..| .+.|+++... ...+.|.
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~-----~ty~~N~ 55 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIAN-----KIYSKNF 55 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHH-----HHHHHHH
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHH-----HHHHHHC
Confidence 345999999999999988888884 567 7999999876 4556665
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.046 Score=49.29 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=45.8
Q ss_pred CCCCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHH-HHHcCCCeEEEEeCCH
Q 024311 3 SSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIF-ACLKGAGTVHFQDLSA 68 (269)
Q Consensus 3 ~g~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~-aa~~ga~~Vv~tD~~~ 68 (269)
.|.-.+|--+=.++.-|.+...+. ....+.+||||||++|--+-. +.+.|+++|++.|...
T Consensus 67 ~g~~~~g~y~SR~~~KL~ei~~~~-----~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~ 128 (321)
T 3lkz_A 67 EGNVTGGHPVSRGTAKLRWLVERR-----FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGG 128 (321)
T ss_dssp HTCCSSCCCSSTHHHHHHHHHHTT-----SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCS
T ss_pred cCcCcCCCccchHHHHHHHHHHhc-----CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCC
Confidence 355566767777888887777663 234677999999999988874 4457888999999854
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.093 Score=46.81 Aligned_cols=52 Identities=23% Similarity=0.192 Sum_probs=39.4
Q ss_pred eeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHH-HcCCCeEEEEeCCH
Q 024311 12 CWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSA 68 (269)
Q Consensus 12 vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa-~~ga~~Vv~tD~~~ 68 (269)
+=.|+.-|.+...+. ....+.+|||||||+|--+-+|+ ..++..|++.|...
T Consensus 72 rSRAAfKL~ei~eK~-----~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~ 124 (282)
T 3gcz_A 72 VSRGSAKLRWMEERG-----YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGV 124 (282)
T ss_dssp SSTHHHHHHHHHHTT-----SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred ecHHHHHHHHHHHhc-----CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEecc
Confidence 345777787777664 24467799999999998888777 45777899888854
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=0.059 Score=61.07 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=14.4
Q ss_pred CCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 187 GGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 187 ~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
..||+||++.+++........++.++++|+ |+|.+++..
T Consensus 1310 ~~ydlvia~~vl~~t~~~~~~l~~~~~lL~-p~G~l~~~e 1348 (2512)
T 2vz8_A 1310 GKADLLVCNCALATLGDPAVAVGNMAATLK-EGGFLLLHT 1348 (2512)
T ss_dssp --CCEEEEECC---------------------CCEEEEEE
T ss_pred CceeEEEEcccccccccHHHHHHHHHHhcC-CCcEEEEEe
Confidence 469999999999988778888888899998 888877653
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=90.81 E-value=0.5 Score=40.90 Aligned_cols=67 Identities=10% Similarity=0.193 Sum_probs=47.4
Q ss_pred CCCCccEEEEeccccccC---------------CHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCc
Q 024311 185 GEGGYDVILLTEIPYSVT---------------SLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI 249 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~---------------~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~ 249 (269)
..++||+|+. |..|... .....++.+.++|+ |+|.++|...... ...++..+++.||
T Consensus 20 ~~~~vdlI~~-DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk-~~g~i~v~~~d~~------~~~~~~~~~~~gf 91 (260)
T 1g60_A 20 ENKSVQLAVI-DPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLD-KDGSLYIFNTPFN------CAFICQYLVSKGM 91 (260)
T ss_dssp CTTCEEEEEE-CCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEE-EEEEEEEEECHHH------HHHHHHHHHHTTC
T ss_pred cccccCEEEE-CCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhc-CCeEEEEEcCcHH------HHHHHHHHHhhcc
Confidence 3468999998 9999865 34556777788898 8999998753321 2345667778887
Q ss_pred -eeEEEEeeec
Q 024311 250 -FGAHLIKEMT 259 (269)
Q Consensus 250 -~~~~~~~~~~ 259 (269)
+...++|...
T Consensus 92 ~~~~~iiW~K~ 102 (260)
T 1g60_A 92 IFQNWITWDKR 102 (260)
T ss_dssp EEEEEEEECCC
T ss_pred ceeEEEEEEec
Confidence 5667777544
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=90.79 E-value=0.25 Score=43.32 Aligned_cols=50 Identities=24% Similarity=0.254 Sum_probs=37.2
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHH-HHHHcCCCeEEEEeCCH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGI-FACLKGAGTVHFQDLSA 68 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl-~aa~~ga~~Vv~tD~~~ 68 (269)
.|+.-|.+...+. ....+.+||||||++|--+- ++.+.|+++|++.|...
T Consensus 62 Ra~~KL~ei~ek~-----~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~ 112 (267)
T 3p8z_A 62 RGSAKLQWFVERN-----MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGG 112 (267)
T ss_dssp THHHHHHHHHHTT-----SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCS
T ss_pred hHHHHHHHHHHhc-----CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCC
Confidence 4566666555543 23467799999999998886 45567888999999854
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=90.16 E-value=0.52 Score=43.25 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETI 71 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl 71 (269)
.+..|||+|.|.|.+...++.. .+++|++.+.++..+
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~ 95 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLY 95 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHH
Confidence 4679999999999988776653 456899999999876
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=90.09 E-value=0.51 Score=42.36 Aligned_cols=59 Identities=20% Similarity=0.165 Sum_probs=44.9
Q ss_pred CCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCH
Q 024311 5 KPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSA 68 (269)
Q Consensus 5 ~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~ 68 (269)
.-.+|.-.=.|++-|.+...+. ....+++||||||++|--+-+|+. .++..|++.|...
T Consensus 56 ~~~~g~yrSRaa~KL~ei~ek~-----l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~ 115 (300)
T 3eld_A 56 RTDVGISVSRGAAKIRWLHERG-----YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGI 115 (300)
T ss_dssp CSSSCCCSSTTHHHHHHHHHHT-----SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred CccCCCccchHHHHHHHHHHhC-----CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecc
Confidence 3344566667888888888762 345889999999999988877775 4777898888854
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.01 E-value=1 Score=40.27 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=48.3
Q ss_pred CCCCccEEEEeccccccC---------------CHHHHHHHHHHhcCCCCeEEEEEEccccc-cc----CcchHHHHHHh
Q 024311 185 GEGGYDVILLTEIPYSVT---------------SLKKLYLLIKKCLRPPYGVVYLATKKNYV-GF----NNAARHLRSLV 244 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~---------------~~~~L~~~l~~~L~~p~g~~~va~k~~~f-g~----~~~~~~F~~~~ 244 (269)
..++||+|+. |..|... .+...+..++++|+ |+|.++|.....+. |. -......++.+
T Consensus 30 ~~~svDlI~t-DPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk-~~G~i~i~~~d~~~~g~~~~~~~~~~~i~~~~ 107 (323)
T 1boo_A 30 PEESISLVMT-SPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLK-PDGSFVVDFGGAYMKGVPARSIYNFRVLIRMI 107 (323)
T ss_dssp CSSCEEEEEE-CCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEECCCEETTEEEECCHHHHHHHHHH
T ss_pred CCCCeeEEEE-CCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCc-CCcEEEEEECCEecCCCcccccchHHHHHHHH
Confidence 3568999998 9999765 35667778888998 89999987554321 10 00134455667
Q ss_pred hhcCc-eeEEEEeee
Q 024311 245 DEEGI-FGAHLIKEM 258 (269)
Q Consensus 245 ~~~g~-~~~~~~~~~ 258 (269)
++.|+ +...++|..
T Consensus 108 ~~~Gf~~~~~iiW~k 122 (323)
T 1boo_A 108 DEVGFFLAEDFYWFN 122 (323)
T ss_dssp HTTCCEEEEEEEEEC
T ss_pred HhCCCEEEEEEEEec
Confidence 88886 455677754
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=88.88 E-value=0.85 Score=42.35 Aligned_cols=47 Identities=9% Similarity=0.075 Sum_probs=36.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHH-Hc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFAC-LK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa-~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
-.+..|+|+||+.|..++.++ .. + ..+|++-+-+|... +.++.|+..
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~-----~~L~~n~~~ 274 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINL-----QTLQNVLRR 274 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHH-----HHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHH-----HHHHHHHHh
Confidence 377899999999999998766 43 3 26999999999988 444555543
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=88.51 E-value=0.82 Score=40.97 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=39.0
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
.|++++.... .-.|..|||--||+|-++++|..+|. +.++.|+++...+
T Consensus 240 ~l~~~~i~~~-----~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~ 288 (323)
T 1boo_A 240 KLPEFFIRML-----TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVA 288 (323)
T ss_dssp HHHHHHHHHH-----CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred HHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHH
Confidence 4555554432 23678999999999999999999987 8999999998763
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=88.29 E-value=0.22 Score=45.88 Aligned_cols=40 Identities=10% Similarity=-0.002 Sum_probs=28.9
Q ss_pred CCCCccEEEEeccccccCCHH---------------------------------HHHHHHHHhcCCCCeEEEEE
Q 024311 185 GEGGYDVILLTEIPYSVTSLK---------------------------------KLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~---------------------------------~L~~~l~~~L~~p~g~~~va 225 (269)
..+.+|+|.++=++++.+..+ .+++...+-|+ |+|++++.
T Consensus 136 p~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~-pGG~mvl~ 208 (359)
T 1m6e_X 136 PRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVV-PGGRMVLT 208 (359)
T ss_dssp CTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBC-TTCEEEEE
T ss_pred CCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEE
Confidence 456888888888888755433 34677778898 88887765
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.03 E-value=12 Score=33.96 Aligned_cols=66 Identities=20% Similarity=0.166 Sum_probs=39.6
Q ss_pred ccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 7 DGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 7 e~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
.-.+..|+|+-. ||..+.... -.+.+||-++.+-|.+++.++..+. ..++| .-+-+.++..|+.+|
T Consensus 16 ~~~l~a~da~d~---~ll~~~~~~---~~~~~~~~~~d~~gal~~~~~~~~~--~~~~d--s~~~~~~~~~n~~~~ 81 (375)
T 4dcm_A 16 VNPLQAWEAADE---YLLQQLDDT---EIRGPVLILNDAFGALSCALAEHKP--YSIGD--SYISELATRENLRLN 81 (375)
T ss_dssp SCSCCSCCHHHH---HHHHTTTTC---CCCSCEEEECCSSSHHHHHTGGGCC--EEEES--CHHHHHHHHHHHHHT
T ss_pred CCCCCccchHHH---HHHHhhhhc---cCCCCEEEECCCCCHHHHhhccCCc--eEEEh--HHHHHHHHHHHHHHc
Confidence 356788998864 444432111 1456899999999998887765443 44566 223334444555444
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=86.62 E-value=0.76 Score=40.78 Aligned_cols=42 Identities=12% Similarity=0.021 Sum_probs=34.3
Q ss_pred CEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 37 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
.+||||-||+|..++.+-..|..-|.+.|+++... ...+.|.
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~-----~ty~~N~ 42 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIW-----KTYESNH 42 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTH-----HHHHHHC
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHH-----HHHHHHC
Confidence 47999999999888888888997788999998776 4455554
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=86.56 E-value=1.7 Score=38.99 Aligned_cols=73 Identities=15% Similarity=0.272 Sum_probs=49.4
Q ss_pred CCCCccEEEEeccccccC------------CHHHHHHHHHHhcCCCCeEEEEEEcccccc-cC-cchHHHHHHhhhcC-c
Q 024311 185 GEGGYDVILLTEIPYSVT------------SLKKLYLLIKKCLRPPYGVVYLATKKNYVG-FN-NAARHLRSLVDEEG-I 249 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~------------~~~~L~~~l~~~L~~p~g~~~va~k~~~fg-~~-~~~~~F~~~~~~~g-~ 249 (269)
..++||+|+. |..|... .....+..+.++|+ |+|.++|....++.+ .. ..+...++.++..| +
T Consensus 55 ~~~svDlI~t-DPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk-~~G~i~i~~~~~~~~~~~~~~l~~l~~~i~~~G~~ 132 (319)
T 1eg2_A 55 PDDSVQLIIC-DPPYNIMLADWDDHMDYIGWAKRWLAEAERVLS-PTGSIAIFGGLQYQGEAGSGDLISIISHMRQNSKM 132 (319)
T ss_dssp CTTCEEEEEE-CCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEE-EEEEEEEEECSCCCCCTTBCCHHHHHHHHHHHCCC
T ss_pred ccCCcCEEEE-CCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcC-CCeEEEEEcCcccccccccccHHHHHHHHhCcccc
Confidence 3458999999 9999764 33455666778898 899999887665431 00 12355667777776 4
Q ss_pred -eeEEEEeeec
Q 024311 250 -FGAHLIKEMT 259 (269)
Q Consensus 250 -~~~~~~~~~~ 259 (269)
+...++|...
T Consensus 133 ~~~~~IIW~K~ 143 (319)
T 1eg2_A 133 LLANLIIWNYP 143 (319)
T ss_dssp EEEEEEEEECS
T ss_pred eeEEEEEEECC
Confidence 6677778643
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=86.51 E-value=1.3 Score=39.76 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=41.1
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCH---HHHH
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSA---ETIR 72 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~---~vl~ 72 (269)
..|++++.... .-.|..|||--||+|-++++|..+|. +.++.|+++ +..+
T Consensus 229 ~~l~~~~i~~~-----~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~ 281 (319)
T 1eg2_A 229 AAVIERLVRAL-----SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQ 281 (319)
T ss_dssp HHHHHHHHHHH-----SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHH
T ss_pred HHHHHHHHHHh-----CCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHH
Confidence 56777776653 23678999999999999999999986 899999999 7664
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.36 E-value=1.7 Score=38.74 Aligned_cols=39 Identities=18% Similarity=0.090 Sum_probs=33.1
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCe--EEEEeCCHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGT--VHFQDLSAETI 71 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~--Vv~tD~~~~vl 71 (269)
.-...+||||-||.|-.++.+...|..- |.+.|+++...
T Consensus 13 ~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~ 53 (295)
T 2qrv_A 13 KRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSI 53 (295)
T ss_dssp CCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHH
T ss_pred cCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHH
Confidence 3466799999999999998888888865 68999999876
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=83.62 E-value=1.6 Score=39.41 Aligned_cols=42 Identities=21% Similarity=0.127 Sum_probs=33.6
Q ss_pred CEEEEEcCCCCHHHHHHHHcCC--CeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 37 KRVLELSCGYGLPGIFACLKGA--GTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga--~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
.+|+||-||+|..++.+...|. +.|.+.|+++... ...+.|.
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~-----~ty~~N~ 47 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVAN-----SVYKHNF 47 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHH-----HHHHHHC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHH-----HHHHHhC
Confidence 3899999999988888887786 5688999999876 4455554
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=80.80 E-value=5.1 Score=35.05 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=44.0
Q ss_pred CCCCccEEEEeccccccCC---------------------HHHHHHHHHHhcCCCCeEEEEEEccccc-----ccC---c
Q 024311 185 GEGGYDVILLTEIPYSVTS---------------------LKKLYLLIKKCLRPPYGVVYLATKKNYV-----GFN---N 235 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~---------------------~~~L~~~l~~~L~~p~g~~~va~k~~~f-----g~~---~ 235 (269)
..++||+|++ |..|.... +..+++.+.++|+ |+|.+++...-.+. |.. .
T Consensus 37 ~~~s~DlIvt-dPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk-~~G~l~i~~~d~~~~~~~~g~~~~~~ 114 (297)
T 2zig_A 37 PEASVHLVVT-SPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLV-PGGRLVIVVGDVAVARRRFGRHLVFP 114 (297)
T ss_dssp CTTCEEEEEE-CCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEEEECCEEEECC----EEEEC
T ss_pred CCCceeEEEE-CCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcC-CCcEEEEEECCCccccccCCcccccc
Confidence 3468999998 88886421 1345667778898 89998887542221 100 0
Q ss_pred chHHHHHHhhhcCc-eeEEEEeee
Q 024311 236 AARHLRSLVDEEGI-FGAHLIKEM 258 (269)
Q Consensus 236 ~~~~F~~~~~~~g~-~~~~~~~~~ 258 (269)
-.......+++.|+ +...++|.-
T Consensus 115 ~~~~l~~~~~~~Gf~~~~~iiW~K 138 (297)
T 2zig_A 115 LHADIQVRCRKLGFDNLNPIIWHK 138 (297)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEC
T ss_pred cHHHHHHHHHHcCCeeeccEEEeC
Confidence 01346667888897 455666753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 269 | ||||
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 1e-04 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 6e-04 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 7e-04 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 0.004 |
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.2 bits (93), Expect = 1e-04
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73
F+ K VL++ G G+ +FA GA V + S+ +
Sbjct: 32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYA 71
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (88), Expect = 6e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLS 67
F+ K VL++ CG G+ +FA GA V D+S
Sbjct: 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS 70
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (87), Expect = 7e-04
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 27 IRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLS 67
I F+ K VL++ CG G+ +FA GA V D S
Sbjct: 27 IYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQS 67
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.5 bits (81), Expect = 0.004
Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 10/99 (10%)
Query: 36 GKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPE 95
G VLE G G ++ R + + + A++ +
Sbjct: 99 GDTVLEAGSGSG----------GMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRD 148
Query: 96 SSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVT 134
S + +V F D + + D +
Sbjct: 149 SWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALD 187
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 269 | |||
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.56 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.55 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.54 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.53 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.51 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.49 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.48 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.44 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.43 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.41 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.38 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.36 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.35 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.32 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.31 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.3 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.3 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.3 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.28 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.26 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.26 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.25 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.24 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.22 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.22 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.22 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.2 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.19 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.17 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.16 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.16 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.15 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.15 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.13 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.13 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.12 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.12 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.11 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.1 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.06 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.06 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.03 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.03 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.02 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.02 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.02 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.0 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 98.98 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.93 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 98.93 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.92 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 98.91 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.85 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.84 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.84 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.81 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.76 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.76 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.68 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.57 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.55 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 98.54 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.47 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.41 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.32 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.3 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.26 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.2 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.16 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.15 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.14 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.06 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.93 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.86 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.76 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.74 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.72 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.66 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.59 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.59 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.46 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.37 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 97.36 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.33 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.31 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.28 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.18 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 96.75 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 96.66 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.65 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.63 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.24 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.17 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 95.75 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 94.21 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 94.09 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 93.81 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 93.34 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 93.12 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 92.36 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 91.15 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 91.11 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 90.5 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 90.04 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 89.82 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 89.78 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 86.51 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 86.5 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 86.43 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 85.82 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 83.89 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 82.73 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 81.11 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 80.73 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 80.23 |
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.56 E-value=6e-14 Score=123.21 Aligned_cols=152 Identities=22% Similarity=0.268 Sum_probs=104.9
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCC
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQP 94 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~ 94 (269)
.....+.+.+........-++.+|||+|||+|..++.++.. |+ +|++.|+++.+++.+ +.+....
T Consensus 48 ~~~~~~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a-----~~~~~~~-------- 113 (282)
T d2o57a1 48 SLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRN-----EEYNNQA-------- 113 (282)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHH-----HHHHHHH--------
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhh-----hcccccc--------
Confidence 34444555443322223447899999999999999777764 65 899999999998543 2222211
Q ss_pred CCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCch
Q 024311 95 ESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSR 174 (269)
Q Consensus 95 ~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~ 174 (269)
.+..+++|..+|+.+++
T Consensus 114 ---------gl~~~v~~~~~d~~~l~------------------------------------------------------ 130 (282)
T d2o57a1 114 ---------GLADNITVKYGSFLEIP------------------------------------------------------ 130 (282)
T ss_dssp ---------TCTTTEEEEECCTTSCS------------------------------------------------------
T ss_pred ---------ccccccccccccccccc------------------------------------------------------
Confidence 13356788888876642
Q ss_pred hhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccc----------------cCcchH
Q 024311 175 AWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVG----------------FNNAAR 238 (269)
Q Consensus 175 ~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg----------------~~~~~~ 238 (269)
...++||+|++.+++++......+++.+.++|+ |+|++++......-+ .-.+..
T Consensus 131 ---------~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 200 (282)
T d2o57a1 131 ---------CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLK-PRGVMAITDPMKEDGIDKSSIQPILDRIKLHDMGSLG 200 (282)
T ss_dssp ---------SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEEEEEECTTCCGGGGHHHHHHHTCSSCCCHH
T ss_pred ---------ccccccchhhccchhhhccCHHHHHHHHHHhcC-CCcEEEEEEeecCCCCchhHHHHHHHHhccCCCCCHH
Confidence 134689999999999999999999999999999 899988864321100 011356
Q ss_pred HHHHHhhhcCceeEEE
Q 024311 239 HLRSLVDEEGIFGAHL 254 (269)
Q Consensus 239 ~F~~~~~~~g~~~~~~ 254 (269)
.+...+++.|+...++
T Consensus 201 ~~~~~l~~~Gf~~i~~ 216 (282)
T d2o57a1 201 LYRSLAKECGLVTLRT 216 (282)
T ss_dssp HHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHcCCceEEE
Confidence 6778888999754444
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.55 E-value=4.2e-14 Score=119.60 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=83.3
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
-.+.+|||||||+|..++.++..++ +|+++|+++++++. .+.++... ..+++.|+.
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~-----A~~~~~~~------------------~~~~i~~~~ 69 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKV-----ARAFIEGN------------------GHQQVEYVQ 69 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHH-----HHHHHHHT------------------TCCSEEEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhh-----hhhccccc------------------ccccccccc
Confidence 3678999999999999999998886 89999999999844 34444321 124677877
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|+.+.+ ...++||+|+
T Consensus 70 ~d~~~l~---------------------------------------------------------------~~~~~fD~v~ 86 (231)
T d1vl5a_ 70 GDAEQMP---------------------------------------------------------------FTDERFHIVT 86 (231)
T ss_dssp CCC-CCC---------------------------------------------------------------SCTTCEEEEE
T ss_pred ccccccc---------------------------------------------------------------cccccccccc
Confidence 7776542 1346899999
Q ss_pred EeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 194 LTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
+.+++++..+...+++.+.++|+ |+|++++.
T Consensus 87 ~~~~l~~~~d~~~~l~~~~r~Lk-pgG~l~i~ 117 (231)
T d1vl5a_ 87 CRIAAHHFPNPASFVSEAYRVLK-KGGQLLLV 117 (231)
T ss_dssp EESCGGGCSCHHHHHHHHHHHEE-EEEEEEEE
T ss_pred ccccccccCCHHHHHHHHHHhcC-CCcEEEEE
Confidence 99999999999999999999999 99988886
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.54 E-value=1.1e-13 Score=115.60 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=101.3
Q ss_pred CCCCccCceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 3 SSKPDGFLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 3 ~g~ye~G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
+|++..+. ++.++..|++++. ..++++|||+|||+|..++.++..++ +|+++|+++.+++. .+.|
T Consensus 29 ~gvF~~~~-~d~~t~lLi~~l~--------~~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~s~~~i~~-----a~~n 93 (194)
T d1dusa_ 29 SGVFSYGK-VDKGTKILVENVV--------VDKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKL-----AKEN 93 (194)
T ss_dssp TTSTTTTS-CCHHHHHHHHHCC--------CCTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHH-----HHHH
T ss_pred CCccCCCC-cCHHHHHHHHhCC--------cCCCCeEEEEeecCChhHHHHHhhcc-ccceeeeccccchh-----HHHH
Confidence 34543332 3456666666542 23688999999999999999988765 89999999999844 4445
Q ss_pred HHHhhhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCC
Q 024311 83 LEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDS 162 (269)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 162 (269)
+..+. + ...++++...|+.+.
T Consensus 94 ~~~~~----------l------~~~~i~~~~~d~~~~------------------------------------------- 114 (194)
T d1dusa_ 94 IKLNN----------L------DNYDIRVVHSDLYEN------------------------------------------- 114 (194)
T ss_dssp HHHTT----------C------TTSCEEEEECSTTTT-------------------------------------------
T ss_pred HHHhC----------C------ccceEEEEEcchhhh-------------------------------------------
Confidence 44321 0 012455555554321
Q ss_pred cccccccccCchhhhhhcccccCCCCccEEEEeccccccCC-HHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHH
Q 024311 163 SSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTS-LKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLR 241 (269)
Q Consensus 163 ~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~-~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~ 241 (269)
..+..||+|++..++|.... .+.+++.+.++|+ |+|++++...... +...+.
T Consensus 115 ---------------------~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~-----~~~~~~ 167 (194)
T d1dusa_ 115 ---------------------VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLK-DNGEIWVVIQTKQ-----GAKSLA 167 (194)
T ss_dssp ---------------------CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEE-EEEEEEEEEESTH-----HHHHHH
T ss_pred ---------------------hccCCceEEEEcccEEecchhhhhHHHHHHHhcC-cCcEEEEEEeCcC-----CHHHHH
Confidence 13458999999777766543 5778999999999 8999888654432 345566
Q ss_pred HHhhhcCceeEEEEeeecCcceE
Q 024311 242 SLVDEEGIFGAHLIKEMTDRDIW 264 (269)
Q Consensus 242 ~~~~~~g~~~~~~~~~~~~~~i~ 264 (269)
..+++. +...+.+.+.....|.
T Consensus 168 ~~l~~~-f~~~~~~~~~~gf~vl 189 (194)
T d1dusa_ 168 KYMKDV-FGNVETVTIKGGYRVL 189 (194)
T ss_dssp HHHHHH-HSCCEEEEEETTEEEE
T ss_pred HHHHHh-CCcEEEEEecCCcEEE
Confidence 655543 2234444444333333
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.53 E-value=5.6e-14 Score=119.91 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=86.9
Q ss_pred HHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCC
Q 024311 19 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSL 98 (269)
Q Consensus 19 La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~ 98 (269)
..++|.+.. ..-.|.+|||||||+|..+..++..++ +|++.|+++.+++.+ +.+...+
T Consensus 4 ~~~~l~~~~----~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A-----~~~~~~~------------ 61 (234)
T d1xxla_ 4 SLGLMIKTA----ECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVA-----SSFAQEK------------ 61 (234)
T ss_dssp HHHHHHHHH----TCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHH-----HHHHHHH------------
T ss_pred HHHHHHHHh----CCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhh-----hhhhccc------------
Confidence 344554443 234688999999999999999998886 899999999998543 2333221
Q ss_pred CCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhh
Q 024311 99 TPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWER 178 (269)
Q Consensus 99 ~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~ 178 (269)
..+++.+..+|.++.+
T Consensus 62 ------~~~~~~~~~~d~~~~~---------------------------------------------------------- 77 (234)
T d1xxla_ 62 ------GVENVRFQQGTAESLP---------------------------------------------------------- 77 (234)
T ss_dssp ------TCCSEEEEECBTTBCC----------------------------------------------------------
T ss_pred ------cccccccccccccccc----------------------------------------------------------
Confidence 0135677767655432
Q ss_pred hcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEE
Q 024311 179 ASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLA 225 (269)
Q Consensus 179 ~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va 225 (269)
..+++||+|+++.++++..+.+.+++.+.++|+ |+|++++.
T Consensus 78 -----~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lk-pgG~~~~~ 118 (234)
T d1xxla_ 78 -----FPDDSFDIITCRYAAHHFSDVRKAVREVARVLK-QDGRFLLV 118 (234)
T ss_dssp -----SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEE-EEEEEEEE
T ss_pred -----ccccccceeeeeceeecccCHHHHHHHHHHeeC-CCcEEEEE
Confidence 134689999999999999999999999999999 99998885
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.51 E-value=7.7e-14 Score=122.08 Aligned_cols=137 Identities=20% Similarity=0.222 Sum_probs=97.7
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccC
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQ 93 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~ 93 (269)
+.+..+.++|.+. ..+|++|||+|||+|..++.+++.|+ +|+++|+++.++ .+.+.|+..|.
T Consensus 105 ~TT~l~l~~l~~~------~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av-----~~A~~na~~n~------ 166 (254)
T d2nxca1 105 ETTRLALKALARH------LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVL-----PQAEANAKRNG------ 166 (254)
T ss_dssp HHHHHHHHHHHHH------CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGH-----HHHHHHHHHTT------
T ss_pred chhhHHHHHHHhh------cCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHH-----HHHHHHHHHcC------
Confidence 5667778888765 34789999999999999999999987 799999999998 45566665431
Q ss_pred CCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCc
Q 024311 94 PESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGS 173 (269)
Q Consensus 94 ~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs 173 (269)
.++++..+|+...
T Consensus 167 -------------~~~~~~~~d~~~~------------------------------------------------------ 179 (254)
T d2nxca1 167 -------------VRPRFLEGSLEAA------------------------------------------------------ 179 (254)
T ss_dssp -------------CCCEEEESCHHHH------------------------------------------------------
T ss_pred -------------CceeEEecccccc------------------------------------------------------
Confidence 1233443332210
Q ss_pred hhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEE
Q 024311 174 RAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAH 253 (269)
Q Consensus 174 ~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~ 253 (269)
...++||+|++. .+ ......++..+.++|+ |+|+++++.-.. .....+.+.+++.|+-..+
T Consensus 180 ----------~~~~~fD~V~an-i~--~~~l~~l~~~~~~~Lk-pGG~lilSgil~-----~~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 180 ----------LPFGPFDLLVAN-LY--AELHAALAPRYREALV-PGGRALLTGILK-----DRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp ----------GGGCCEEEEEEE-CC--HHHHHHHHHHHHHHEE-EEEEEEEEEEEG-----GGHHHHHHHHHHTTCEEEE
T ss_pred ----------ccccccchhhhc-cc--cccHHHHHHHHHHhcC-CCcEEEEEecch-----hhHHHHHHHHHHCCCEEEE
Confidence 123589999985 22 3346788899999999 999998864221 2467889999999974333
Q ss_pred E
Q 024311 254 L 254 (269)
Q Consensus 254 ~ 254 (269)
.
T Consensus 241 ~ 241 (254)
T d2nxca1 241 E 241 (254)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=3.4e-13 Score=115.81 Aligned_cols=150 Identities=17% Similarity=0.085 Sum_probs=107.2
Q ss_pred eccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhc
Q 024311 13 WESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQS 91 (269)
Q Consensus 13 W~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~ 91 (269)
++.+-...+.|.... ....|.+|||+|||+|...+.+++. |+ +|++.|.++.+++. .+.|....
T Consensus 15 ~p~~~~~~~~l~~~~----~l~pg~~VLDiGCG~G~~~~~la~~~~~-~v~GvD~s~~~~~~-----ar~~~~~~----- 79 (245)
T d1nkva_ 15 NPFTEEKYATLGRVL----RMKPGTRILDLGSGSGEMLCTWARDHGI-TGTGIDMSSLFTAQ-----AKRRAEEL----- 79 (245)
T ss_dssp SSCCHHHHHHHHHHT----CCCTTCEEEEETCTTCHHHHHHHHHTCC-EEEEEESCHHHHHH-----HHHHHHHT-----
T ss_pred CCCCHHHHHHHHHHc----CCCCCCEEEEEcCCCCHHHHHHHHhcCC-EEEEEecccchhhH-----HHHHHHHh-----
Confidence 566666677777663 2446899999999999888777664 55 89999999999844 34443321
Q ss_pred cCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCccccccccc
Q 024311 92 RQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLS 171 (269)
Q Consensus 92 ~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (269)
.+.++++|..+|+.+..
T Consensus 80 ------------gl~~~v~~~~~d~~~~~--------------------------------------------------- 96 (245)
T d1nkva_ 80 ------------GVSERVHFIHNDAAGYV--------------------------------------------------- 96 (245)
T ss_dssp ------------TCTTTEEEEESCCTTCC---------------------------------------------------
T ss_pred ------------hccccchhhhhHHhhcc---------------------------------------------------
Confidence 12346777777766421
Q ss_pred CchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc----------------ccCc
Q 024311 172 GSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV----------------GFNN 235 (269)
Q Consensus 172 gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f----------------g~~~ 235 (269)
..++||+|++..++++..+.+.+++.++++|+ |+|++++....... ..-.
T Consensus 97 -------------~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~Lk-PGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (245)
T d1nkva_ 97 -------------ANEKCDVAACVGATWIAGGFAGAEELLAQSLK-PGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFL 162 (245)
T ss_dssp -------------CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEE-EEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSC
T ss_pred -------------ccCceeEEEEEehhhccCCHHHHHHHHHHHcC-cCcEEEEEeccccCCCChHHHHHHhccCCCcccC
Confidence 34589999999999999999999999999999 99999886421000 0012
Q ss_pred chHHHHHHhhhcCceeEEE
Q 024311 236 AARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 236 ~~~~F~~~~~~~g~~~~~~ 254 (269)
....+...+++.|+-..+.
T Consensus 163 ~~~~~~~~~~~aG~~~v~~ 181 (245)
T d1nkva_ 163 TLPGLVGAFDDLGYDVVEM 181 (245)
T ss_dssp CHHHHHHHHHTTTBCCCEE
T ss_pred CHHHHHHHHHHcCCEEEEE
Confidence 4566888899999854443
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.48 E-value=2.3e-13 Score=115.69 Aligned_cols=112 Identities=20% Similarity=0.164 Sum_probs=82.8
Q ss_pred HHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCC
Q 024311 20 VNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLT 99 (269)
Q Consensus 20 a~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~ 99 (269)
-+|+.+... ..+++++|||||||+|.....++..|. +|+++|+++++++.+ +.+.
T Consensus 8 ~~~~~~~~~---~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a-----~~~~---------------- 62 (225)
T d2p7ia1 8 HPFMVRAFT---PFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHA-----QGRL---------------- 62 (225)
T ss_dssp HHHHHHHHG---GGCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHH-----HHHS----------------
T ss_pred HHHHHHHhh---hhCCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhh-----hccc----------------
Confidence 355555442 235788999999999999988888886 799999999988432 2211
Q ss_pred CCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhh
Q 024311 100 PSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERA 179 (269)
Q Consensus 100 ~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~ 179 (269)
..++.+..++.++.
T Consensus 63 ------~~~~~~~~~~~~~~------------------------------------------------------------ 76 (225)
T d2p7ia1 63 ------KDGITYIHSRFEDA------------------------------------------------------------ 76 (225)
T ss_dssp ------CSCEEEEESCGGGC------------------------------------------------------------
T ss_pred ------cccccccccccccc------------------------------------------------------------
Confidence 12455555544331
Q ss_pred cccccCCCCccEEEEeccccccCCHHHHHHHHH-HhcCCCCeEEEEEEc
Q 024311 180 SEADQGEGGYDVILLTEIPYSVTSLKKLYLLIK-KCLRPPYGVVYLATK 227 (269)
Q Consensus 180 ~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~-~~L~~p~g~~~va~k 227 (269)
..+++||+|++.+++++.++...++..+. ++|+ |+|.+++...
T Consensus 77 ----~~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk-~gG~l~i~~p 120 (225)
T d2p7ia1 77 ----QLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLA-EGGRLFLVCP 120 (225)
T ss_dssp ----CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEE-EEEEEEEEEE
T ss_pred ----ccccccccccccceeEecCCHHHHHHHHHHHhcC-CCceEEEEeC
Confidence 13458999999999999999999888887 7898 8999998753
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.44 E-value=1.1e-13 Score=111.60 Aligned_cols=111 Identities=21% Similarity=0.256 Sum_probs=84.1
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.++|++|||||||||..|+.|+.+||++|++.|.++.++ ..++.|+..+. ...+++++
T Consensus 12 ~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~-----~~~~~n~~~~~-----------------~~~~~~ii 69 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQ-----AIIQDNIIMTK-----------------AENRFTLL 69 (152)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHH-----HHHHHHHHTTT-----------------CGGGEEEE
T ss_pred hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhh-----hhhhhhhhhcc-----------------cccchhhh
Confidence 468999999999999999999999999999999999998 55566665431 12346666
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|+.... .....+||+|
T Consensus 70 ~~D~~~~l--------------------------------------------------------------~~~~~~fDiI 87 (152)
T d2esra1 70 KMEAERAI--------------------------------------------------------------DCLTGRFDLV 87 (152)
T ss_dssp CSCHHHHH--------------------------------------------------------------HHBCSCEEEE
T ss_pred cccccccc--------------------------------------------------------------ccccccccee
Confidence 55533210 0134589999
Q ss_pred EEeccccccCCHHHHHHHHHH--hcCCCCeEEEEEEccc
Q 024311 193 LLTEIPYSVTSLKKLYLLIKK--CLRPPYGVVYLATKKN 229 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~--~L~~p~g~~~va~k~~ 229 (269)
+. |..|........++.|.. +|+ |+|++++-+.+.
T Consensus 88 f~-DPPy~~~~~~~~l~~i~~~~~L~-~~g~iiiE~~~~ 124 (152)
T d2esra1 88 FL-DPPYAKETIVATIEALAAKNLLS-EQVMVVCETDKT 124 (152)
T ss_dssp EE-CCSSHHHHHHHHHHHHHHTTCEE-EEEEEEEEEETT
T ss_pred Ee-chhhccchHHHHHHHHHHCCCcC-CCeEEEEEeCCC
Confidence 99 999998888888888875 577 899998875543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.43 E-value=3.9e-13 Score=112.43 Aligned_cols=103 Identities=21% Similarity=0.350 Sum_probs=75.4
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
++.+|||||||+|...+.++..++ +|+++|+++++++.+ +.+.... ..++.+...
T Consensus 37 ~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~a-----k~~~~~~-------------------~~~~~~~~~ 91 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKA-----REYAKSR-------------------ESNVEFIVG 91 (226)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHH-----HHHHHHT-------------------TCCCEEEEC
T ss_pred CCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhh-----hhhhccc-------------------ccccccccc
Confidence 567999999999999999999887 899999999999554 2222111 012333333
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|..+++ ...++||+|++
T Consensus 92 d~~~l~---------------------------------------------------------------~~~~~fD~I~~ 108 (226)
T d1ve3a1 92 DARKLS---------------------------------------------------------------FEDKTFDYVIF 108 (226)
T ss_dssp CTTSCC---------------------------------------------------------------SCTTCEEEEEE
T ss_pred cccccc---------------------------------------------------------------ccCcCceEEEE
Confidence 333221 24568999999
Q ss_pred eccccccC--CHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 195 TEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 195 sD~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
.+++++.+ ....+++.+.++|+ |+|++++..
T Consensus 109 ~~~l~~~~~~d~~~~l~~i~~~Lk-pgG~lii~~ 141 (226)
T d1ve3a1 109 IDSIVHFEPLELNQVFKEVRRVLK-PSGKFIMYF 141 (226)
T ss_dssp ESCGGGCCHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ecchhhCChhHHHHHHHHHHHHcC-cCcEEEEEE
Confidence 99999854 56678999999999 999988764
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=3.1e-12 Score=108.23 Aligned_cols=135 Identities=14% Similarity=0.131 Sum_probs=93.7
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
...+.+|||||||+|..+..++..++.+|++.|+++.+|+. .+.+.... ..++++|+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~-----ak~~~~~~------------------~~~~~~f~ 114 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQ-----AKTYLGEE------------------GKRVRNYF 114 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHH-----HHHHTGGG------------------GGGEEEEE
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhc-----cccccccc------------------cccccccc
Confidence 34667999999999988877665666799999999999854 23332111 01355676
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
++|..+.+ ...++||+|
T Consensus 115 ~~d~~~~~---------------------------------------------------------------~~~~~fD~I 131 (222)
T d2ex4a1 115 CCGLQDFT---------------------------------------------------------------PEPDSYDVI 131 (222)
T ss_dssp ECCGGGCC---------------------------------------------------------------CCSSCEEEE
T ss_pred cccccccc---------------------------------------------------------------ccccccccc
Confidence 66654421 135699999
Q ss_pred EEeccccccCCH--HHHHHHHHHhcCCCCeEEEEEEccccc----cc-----CcchHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVTSL--KKLYLLIKKCLRPPYGVVYLATKKNYV----GF-----NNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~~~--~~L~~~l~~~L~~p~g~~~va~k~~~f----g~-----~~~~~~F~~~~~~~g~~~~~~ 254 (269)
++.+++++.... ..+++.++++|+ |+|.+++......- .. ..+..++.+.+++.||-..+.
T Consensus 132 ~~~~~l~h~~~~~~~~~l~~i~~~Lk-~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~~ 203 (222)
T d2ex4a1 132 WIQWVIGHLTDQHLAEFLRRCKGSLR-PNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAE 203 (222)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred ccccccccchhhhhhhHHHHHHHhcC-CcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEEE
Confidence 999999987543 478999999999 89998886322111 11 125788999999999844443
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.38 E-value=1.4e-12 Score=110.32 Aligned_cols=100 Identities=23% Similarity=0.304 Sum_probs=75.3
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.++.+|||+|||+|.....++..|+ +|+++|+++.+++.+ +.|.. . .+..
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a-----~~~~~----------------------~--~~~~ 90 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVA-----REKGV----------------------K--NVVE 90 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHH-----HHHTC----------------------S--CEEE
T ss_pred CCCCEEEEECCCCchhcccccccce-EEEEeeccccccccc-----ccccc----------------------c--cccc
Confidence 3678999999999999999998887 899999999998543 22210 0 1122
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
++.++++ ..+++||+|+
T Consensus 91 ~~~~~l~---------------------------------------------------------------~~~~~fD~ii 107 (246)
T d2avna1 91 AKAEDLP---------------------------------------------------------------FPSGAFEAVL 107 (246)
T ss_dssp CCTTSCC---------------------------------------------------------------SCTTCEEEEE
T ss_pred ccccccc---------------------------------------------------------------ccccccccee
Confidence 2322211 2356999999
Q ss_pred E-eccccccCCHHHHHHHHHHhcCCCCeEEEEEEc
Q 024311 194 L-TEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATK 227 (269)
Q Consensus 194 a-sD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k 227 (269)
+ .+++++..+.+.+++.+.++|+ |+|++++...
T Consensus 108 ~~~~~~~~~~d~~~~l~~i~r~Lk-~gG~~ii~~~ 141 (246)
T d2avna1 108 ALGDVLSYVENKDKAFSEIRRVLV-PDGLLIATVD 141 (246)
T ss_dssp ECSSHHHHCSCHHHHHHHHHHHEE-EEEEEEEEEE
T ss_pred eecchhhhhhhHHHHHHHHHhhcC-cCcEEEEEEC
Confidence 7 5788888899999999999999 8999988764
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.36 E-value=3.6e-12 Score=108.70 Aligned_cols=103 Identities=25% Similarity=0.398 Sum_probs=75.5
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
-+.++|||+|||+|...+.++..|+ +|+++|.++.+++. .+.|.... ..++++..
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~-----a~~~~~~~-------------------~~~i~~~~ 94 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRV-----ARRKAKER-------------------NLKIEFLQ 94 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHHHHT-------------------TCCCEEEE
T ss_pred CCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccc-----cccccccc-------------------cccchhee
Confidence 3677999999999999999999998 89999999999954 34443221 12466666
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|+++++ .+++||+|+
T Consensus 95 ~d~~~l~----------------------------------------------------------------~~~~fD~I~ 110 (251)
T d1wzna1 95 GDVLEIA----------------------------------------------------------------FKNEFDAVT 110 (251)
T ss_dssp SCGGGCC----------------------------------------------------------------CCSCEEEEE
T ss_pred hhhhhcc----------------------------------------------------------------cccccchHh
Confidence 6655431 235899999
Q ss_pred Ee-cccccc--CCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 194 LT-EIPYSV--TSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 194 as-D~iY~~--~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
++ .++++. +....+++.+.++|+ |+|++++..
T Consensus 111 ~~~~~~~~~~~~~~~~~L~~~~~~Lk-pgG~lii~~ 145 (251)
T d1wzna1 111 MFFSTIMYFDEEDLRKLFSKVAEALK-PGGVFITDF 145 (251)
T ss_dssp ECSSGGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred hhhhhhhcCChHHHHHHHHHHHHHcC-CCcEEEEEe
Confidence 86 565554 334578888899999 899988753
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.35 E-value=1.8e-12 Score=115.95 Aligned_cols=104 Identities=23% Similarity=0.296 Sum_probs=75.8
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.++|++|||||||+|+.++.||++||++|++.|.++.+. . .++|...+. ...++.+.
T Consensus 31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~-~-----a~~~~~~n~-----------------~~~~v~~~ 87 (316)
T d1oria_ 31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISD-Y-----AVKIVKANK-----------------LDHVVTII 87 (316)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHH-H-----HHHHHHHTT-----------------CTTTEEEE
T ss_pred cCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHh-h-----hhhHHHHhC-----------------CccccceE
Confidence 468999999999999999999999999999999987543 1 223332221 23456776
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.++..+.+ ....+||+|
T Consensus 88 ~~~~~~~~---------------------------------------------------------------~~~~~~D~i 104 (316)
T d1oria_ 88 KGKVEEVE---------------------------------------------------------------LPVEKVDII 104 (316)
T ss_dssp ESCTTTCC---------------------------------------------------------------CSSSCEEEE
T ss_pred eccHHHcc---------------------------------------------------------------cccceeEEE
Confidence 66655431 134589999
Q ss_pred EEe---ccccccCCHHHHHHHHHHhcCCCCeEEE
Q 024311 193 LLT---EIPYSVTSLKKLYLLIKKCLRPPYGVVY 223 (269)
Q Consensus 193 las---D~iY~~~~~~~L~~~l~~~L~~p~g~~~ 223 (269)
++. +.++++..++.++..++++|+ |+|+++
T Consensus 105 vs~~~~~~l~~e~~~~~~l~~~~r~Lk-p~G~ii 137 (316)
T d1oria_ 105 ISEWMGYCLFYESMLNTVLHARDKWLA-PDGLIF 137 (316)
T ss_dssp EECCCBBTBTBTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred eeeeeeeeeccHHHHHHHHHHHHhcCC-CCeEEE
Confidence 863 445666789999999999999 778765
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.32 E-value=6e-12 Score=104.11 Aligned_cols=122 Identities=18% Similarity=0.188 Sum_probs=88.4
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
..+|.+|||+|||+|..++.+|..++ +|++.|.+++++ ...++|+..+. +.++++++
T Consensus 31 ~~~g~~VLDiGcGsG~~s~~lA~~~~-~V~avD~~~~~l-----~~a~~n~~~~g-----------------l~~~v~~~ 87 (186)
T d1l3ia_ 31 PGKNDVAVDVGCGTGGVTLELAGRVR-RVYAIDRNPEAI-----STTEMNLQRHG-----------------LGDNVTLM 87 (186)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTSS-EEEEEESCHHHH-----HHHHHHHHHTT-----------------CCTTEEEE
T ss_pred CCCCCEEEEEECCeEcccccccccce-EEEEecCCHHHH-----HHHHHHHHHcC-----------------CCcceEEE
Confidence 34788999999999999999887754 999999999998 45566665431 23467776
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.. .....||+|
T Consensus 88 ~gda~~~~---------------------------------------------------------------~~~~~~D~v 104 (186)
T d1l3ia_ 88 EGDAPEAL---------------------------------------------------------------CKIPDIDIA 104 (186)
T ss_dssp ESCHHHHH---------------------------------------------------------------TTSCCEEEE
T ss_pred ECchhhcc---------------------------------------------------------------cccCCcCEE
Confidence 66543211 134589999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCc
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGI 249 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~ 249 (269)
+...... ..+.+++.+.++|+ |+|++++..-.. .+...+.+.++..|+
T Consensus 105 ~~~~~~~---~~~~~~~~~~~~Lk-pgG~lvi~~~~~-----e~~~~~~~~l~~~~~ 152 (186)
T d1l3ia_ 105 VVGGSGG---ELQEILRIIKDKLK-PGGRIIVTAILL-----ETKFEAMECLRDLGF 152 (186)
T ss_dssp EESCCTT---CHHHHHHHHHHTEE-EEEEEEEEECBH-----HHHHHHHHHHHHTTC
T ss_pred EEeCccc---cchHHHHHHHHHhC-cCCEEEEEeecc-----ccHHHHHHHHHHcCC
Confidence 9876553 46788899999998 889877664322 246677788888875
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=6e-12 Score=112.04 Aligned_cols=40 Identities=35% Similarity=0.473 Sum_probs=36.8
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 32 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
..++|++|||||||+|+.++.||+.||++|++.|.++.+.
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~ 71 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY 71 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 4578999999999999999999999999999999998765
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.30 E-value=1.2e-11 Score=102.62 Aligned_cols=104 Identities=21% Similarity=0.323 Sum_probs=75.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
+++.+|||||||+|...+.+++.|. +|+++|+++.+++. ++.+..... + +++.+..
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~-----a~~~~~~~~-----------------~-~~~~~~~ 84 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMAN-----LERIKAAEG-----------------L-DNLQTDL 84 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHH-----HHHHHHHTT-----------------C-TTEEEEE
T ss_pred CCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHH-----HHHHhhhcc-----------------c-cchhhhh
Confidence 4566999999999999999999988 89999999999854 333332210 0 1334333
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
.|.... ..+++||+|+
T Consensus 85 ~d~~~~----------------------------------------------------------------~~~~~fD~I~ 100 (198)
T d2i6ga1 85 VDLNTL----------------------------------------------------------------TFDGEYDFIL 100 (198)
T ss_dssp CCTTTC----------------------------------------------------------------CCCCCEEEEE
T ss_pred eecccc----------------------------------------------------------------cccccccEEE
Confidence 332221 1345899999
Q ss_pred Eecccccc--CCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 194 LTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 194 asD~iY~~--~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+..++++. ...+.+++.+.++|+ |+|++++.+
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~~~~~~ 134 (198)
T d2i6ga1 101 STVVMMFLEAQTIPGLIANMQRCTK-PGGYNLIVA 134 (198)
T ss_dssp EESCGGGSCTTHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred EeeeeecCCHHHHHHHHHHHHHHcC-CCcEEEEEE
Confidence 99999975 456789999999998 899888764
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.30 E-value=6.6e-12 Score=112.73 Aligned_cols=104 Identities=21% Similarity=0.313 Sum_probs=74.4
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.++|++|||||||+|++++.||++|+++|++.|.++ ++.. .+.+...+ ....++.+.
T Consensus 36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~-----a~~~~~~~-----------------~~~~~i~~i 92 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEM-----AKELVELN-----------------GFSDKITLL 92 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHH-----HHHHHHHT-----------------TCTTTEEEE
T ss_pred cCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHH-----HHHHHHHh-----------------CccccceEE
Confidence 458999999999999999999999999999999987 4422 22222221 022456666
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.++..+.+ ....+||+|
T Consensus 93 ~~~~~~l~---------------------------------------------------------------~~~~~~D~i 109 (328)
T d1g6q1_ 93 RGKLEDVH---------------------------------------------------------------LPFPKVDII 109 (328)
T ss_dssp ESCTTTSC---------------------------------------------------------------CSSSCEEEE
T ss_pred Eeehhhcc---------------------------------------------------------------CcccceeEE
Confidence 55544321 134689999
Q ss_pred EEec---cccccCCHHHHHHHHHHhcCCCCeEEE
Q 024311 193 LLTE---IPYSVTSLKKLYLLIKKCLRPPYGVVY 223 (269)
Q Consensus 193 lasD---~iY~~~~~~~L~~~l~~~L~~p~g~~~ 223 (269)
++.- .+......+.++..++++|+ |+|+++
T Consensus 110 ~se~~~~~~~~e~~~~~~~~a~~r~Lk-pgG~ii 142 (328)
T d1g6q1_ 110 ISEWMGYFLLYESMMDTVLYARDHYLV-EGGLIF 142 (328)
T ss_dssp EECCCBTTBSTTCCHHHHHHHHHHHEE-EEEEEE
T ss_pred EEEecceeeccchhHHHHHHHHHhccC-CCeEEE
Confidence 9843 44566778889999999999 777664
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.30 E-value=1.9e-11 Score=107.38 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=84.9
Q ss_pred HHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCC
Q 024311 19 LVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPES 96 (269)
Q Consensus 19 La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~ 96 (269)
..+||.... ....++.+|||+|||+|..++.++.. + ..+|+++|+++.+++. .+.|...
T Consensus 14 ~l~~l~~~~---~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~-----a~~~~~~----------- 74 (281)
T d2gh1a1 14 YVSFLVNTV---WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAE-----ARELFRL----------- 74 (281)
T ss_dssp HHHHHHHTT---SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHH-----HHHHHHS-----------
T ss_pred HHHHHHHHH---hccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhh-----hhccccc-----------
Confidence 345665543 12347789999999999999887764 2 2489999999999843 3444421
Q ss_pred CCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhh
Q 024311 97 SLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAW 176 (269)
Q Consensus 97 ~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W 176 (269)
...+++|...|....+
T Consensus 75 --------~~~~~~f~~~d~~~~~-------------------------------------------------------- 90 (281)
T d2gh1a1 75 --------LPYDSEFLEGDATEIE-------------------------------------------------------- 90 (281)
T ss_dssp --------SSSEEEEEESCTTTCC--------------------------------------------------------
T ss_pred --------cccccccccccccccc--------------------------------------------------------
Confidence 1235677666544321
Q ss_pred hhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEc
Q 024311 177 ERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATK 227 (269)
Q Consensus 177 ~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k 227 (269)
..++||+|++..++++.++...+++.+.++|+ |+|.+++...
T Consensus 91 --------~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~lii~~~ 132 (281)
T d2gh1a1 91 --------LNDKYDIAICHAFLLHMTTPETMLQKMIHSVK-KGGKIICFEP 132 (281)
T ss_dssp --------CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEE-EEEEEEEEEC
T ss_pred --------ccCCceEEEEehhhhcCCCHHHHHHHHHHHcC-cCcEEEEEEC
Confidence 23479999999999999999999999999999 8998887653
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.28 E-value=1.6e-11 Score=104.99 Aligned_cols=41 Identities=27% Similarity=0.267 Sum_probs=36.5
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~ 74 (269)
..++++|||+|||+|..++.++..|. +|++.|.++++|+.+
T Consensus 35 ~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A 75 (246)
T d1y8ca_ 35 NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEA 75 (246)
T ss_dssp TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHH
T ss_pred CCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhc
Confidence 34678999999999999999999987 899999999999653
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.26 E-value=1.8e-11 Score=103.02 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=37.9
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 32 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
..+.|++|||||||+|..|+.++..|+++|+++|+++++++
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~ 85 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIE 85 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHH
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHH
Confidence 35789999999999999999999999989999999999884
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.26 E-value=2e-11 Score=105.94 Aligned_cols=129 Identities=17% Similarity=0.214 Sum_probs=89.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
..+++|||+|||+|..+..++..+..+|++.|.++.+++.+ +.+.. ..+.++|+.
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a-----~~~~~--------------------~~~~~~~~~ 146 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEA-----KRELA--------------------GMPVGKFIL 146 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHH-----HHHTT--------------------TSSEEEEEE
T ss_pred CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhh-----hcccc--------------------ccccceeEE
Confidence 36779999999999888765555556899999999998442 22221 013466665
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
.+..+.+ ...++||+|+
T Consensus 147 ~d~~~~~---------------------------------------------------------------~~~~~fD~I~ 163 (254)
T d1xtpa_ 147 ASMETAT---------------------------------------------------------------LPPNTYDLIV 163 (254)
T ss_dssp SCGGGCC---------------------------------------------------------------CCSSCEEEEE
T ss_pred ccccccc---------------------------------------------------------------cCCCccceEE
Confidence 5543321 1356899999
Q ss_pred EeccccccCCH--HHHHHHHHHhcCCCCeEEEEEEcccc---c--c-----cCcchHHHHHHhhhcCcee
Q 024311 194 LTEIPYSVTSL--KKLYLLIKKCLRPPYGVVYLATKKNY---V--G-----FNNAARHLRSLVDEEGIFG 251 (269)
Q Consensus 194 asD~iY~~~~~--~~L~~~l~~~L~~p~g~~~va~k~~~---f--g-----~~~~~~~F~~~~~~~g~~~ 251 (269)
+..++++.... ..+++.+++.|+ |+|.++|...... + . ...+...|.+++++.|+-.
T Consensus 164 ~~~vl~hl~d~d~~~~l~~~~~~Lk-pgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~i 232 (254)
T d1xtpa_ 164 IQWTAIYLTDADFVKFFKHCQQALT-PNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRV 232 (254)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCE
T ss_pred eeccccccchhhhHHHHHHHHHhcC-CCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEE
Confidence 99999988654 477889999998 8999888632111 1 0 1124678999999999833
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.25 E-value=6.9e-11 Score=99.81 Aligned_cols=136 Identities=15% Similarity=0.128 Sum_probs=90.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc---CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK---GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~---ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
.+.+|||||||+|..++.++.. +..+|++.|.+++|++.+ +.++... ....++.+
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A-----~~~~~~~-----------------~~~~~~~~ 96 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERC-----RQHIAAY-----------------HSEIPVEI 96 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHH-----HHHHHTS-----------------CCSSCEEE
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHH-----HHHhHhh-----------------cccchhhh
Confidence 5779999999999999887753 233899999999999543 3333211 01122333
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
...|..+ ....++|+
T Consensus 97 ~~~d~~~-----------------------------------------------------------------~~~~~~d~ 111 (225)
T d1im8a_ 97 LCNDIRH-----------------------------------------------------------------VEIKNASM 111 (225)
T ss_dssp ECSCTTT-----------------------------------------------------------------CCCCSEEE
T ss_pred ccchhhc-----------------------------------------------------------------ccccccee
Confidence 2222111 13458999
Q ss_pred EEEecccccc--CCHHHHHHHHHHhcCCCCeEEEEEEccccc-------------------c-----------------c
Q 024311 192 ILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATKKNYV-------------------G-----------------F 233 (269)
Q Consensus 192 IlasD~iY~~--~~~~~L~~~l~~~L~~p~g~~~va~k~~~f-------------------g-----------------~ 233 (269)
|+++-++++. +....+++.+.+.|+ |+|.+++....+.. | .
T Consensus 112 i~~~~~l~~~~~~d~~~~l~~i~~~Lk-pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (225)
T d1im8a_ 112 VILNFTLQFLPPEDRIALLTKIYEGLN-PNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMR 190 (225)
T ss_dssp EEEESCGGGSCGGGHHHHHHHHHHHEE-EEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCC
T ss_pred eEEeeeccccChhhHHHHHHHHHHhCC-CCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccC
Confidence 9999999876 467789999999999 99998887422100 0 0
Q ss_pred CcchHHHHHHhhhcCceeEEEEeee
Q 024311 234 NNAARHLRSLVDEEGIFGAHLIKEM 258 (269)
Q Consensus 234 ~~~~~~F~~~~~~~g~~~~~~~~~~ 258 (269)
..+..++.+.+++.||-.++++++.
T Consensus 191 ~~s~~~~~~~L~~aGF~~v~~~~~~ 215 (225)
T d1im8a_ 191 TDSIETHKVRLKNVGFSQVELWFQC 215 (225)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEEEEE
T ss_pred CCCHHHHHHHHHHcCCCceEEeeee
Confidence 1244677888999998777776554
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.24 E-value=2e-11 Score=109.84 Aligned_cols=126 Identities=18% Similarity=0.196 Sum_probs=88.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
+|++|||+|||+|..++.++..|+++|+..|.++..+ ...+.|+..|. +..++++..+
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al-----~~a~~N~~~ng-----------------l~~~~~~~~~ 202 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAI-----ETAKENAKLNG-----------------VEDRMKFIVG 202 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHH-----HHHHHHHHHTT-----------------CGGGEEEEES
T ss_pred CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHH-----HHHHHHHHHcC-----------------CCccceeeec
Confidence 5899999999999999999999999999999999998 44556665541 2234556555
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|..+. -... .....+||+|+.
T Consensus 203 d~~~~---------------------------------------------------------~~~~--~~~~~~fD~Vi~ 223 (324)
T d2as0a2 203 SAFEE---------------------------------------------------------MEKL--QKKGEKFDIVVL 223 (324)
T ss_dssp CHHHH---------------------------------------------------------HHHH--HHTTCCEEEEEE
T ss_pred hhhhh---------------------------------------------------------hHHH--HhccCCCCchhc
Confidence 42211 0000 024568999997
Q ss_pred eccccccCC----------HHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhc
Q 024311 195 TEIPYSVTS----------LKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEE 247 (269)
Q Consensus 195 sD~iY~~~~----------~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~ 247 (269)
|..+.... +..|+....++|+ |+|++++++..+.+ +.++|.+.+.+.
T Consensus 224 -DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~-pGG~lv~~s~s~~~----~~~~f~~~v~~a 280 (324)
T d2as0a2 224 -DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVK-DGGILVTCSCSQHV----DLQMFKDMIIAA 280 (324)
T ss_dssp -CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEE-EEEEEEEEECCTTS----CHHHHHHHHHHH
T ss_pred -CCccccCCHHHHHHHHHHHHHHHHHHHHHcC-CCcEEEEEeCCccC----CHHHHHHHHHHH
Confidence 77776433 3446666666787 89998888777654 578898887653
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=2.2e-11 Score=100.86 Aligned_cols=107 Identities=14% Similarity=0.233 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
+.+++||||+||+|..|+.|+..||++|++.|.|+.++ ..++.|+.... ..++.++.
T Consensus 42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~-----~~~k~N~~~~~------------------~~~~~ii~ 98 (183)
T d2fpoa1 42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVS-----QQLIKNLATLK------------------AGNARVVN 98 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHH-----HHHHHHHHHTT------------------CCSEEEEC
T ss_pred cchhhhhhhhccccceeeeEEecCcceeEEEEEeechh-----hHHHHHHhhcc------------------ccceeeee
Confidence 47889999999999999999999999999999999998 45566664321 11334433
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
.|... |- .....+||+|+
T Consensus 99 ~d~~~---------------------------------------------------------~l-----~~~~~~fDlIf 116 (183)
T d2fpoa1 99 SNAMS---------------------------------------------------------FL-----AQKGTPHNIVF 116 (183)
T ss_dssp SCHHH---------------------------------------------------------HH-----SSCCCCEEEEE
T ss_pred ecccc---------------------------------------------------------cc-----cccccccCEEE
Confidence 33111 00 01345899999
Q ss_pred EeccccccCCHHHHHHHHHH--hcCCCCeEEEEEEc
Q 024311 194 LTEIPYSVTSLKKLYLLIKK--CLRPPYGVVYLATK 227 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~--~L~~p~g~~~va~k 227 (269)
+ |..|.....+.++..|.. +|+ ++|++++-+.
T Consensus 117 ~-DPPY~~~~~~~~l~~l~~~~~L~-~~~iIiiE~~ 150 (183)
T d2fpoa1 117 V-DPPFRRGLLEETINLLEDNGWLA-DEALIYVESE 150 (183)
T ss_dssp E-CCSSSTTTHHHHHHHHHHTTCEE-EEEEEEEEEE
T ss_pred E-cCccccchHHHHHHHHHHCCCCC-CCeEEEEEec
Confidence 8 999999999999999887 577 8898888643
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.22 E-value=1.5e-10 Score=102.04 Aligned_cols=143 Identities=13% Similarity=0.086 Sum_probs=93.5
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCC
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQP 94 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~ 94 (269)
-....+.+.+.. ..-.|.+|||+|||.|.+.+.++.. |. +|++.|++++.++.+ +..+...
T Consensus 37 Q~~k~~~~~~~l----~l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a-----~~~~~~~-------- 98 (280)
T d2fk8a1 37 QYAKVDLNLDKL----DLKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARC-----EQVLASI-------- 98 (280)
T ss_dssp HHHHHHHHHTTS----CCCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHH-----HHHHHTS--------
T ss_pred HHHHHHHHHHHc----CCCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHH-----HHHHHhh--------
Confidence 344445555542 2446899999999999988877765 66 999999999887442 2212110
Q ss_pred CCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCch
Q 024311 95 ESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSR 174 (269)
Q Consensus 95 ~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~ 174 (269)
.+...+.+...|..
T Consensus 99 ---------~l~~~~~~~~~d~~--------------------------------------------------------- 112 (280)
T d2fk8a1 99 ---------DTNRSRQVLLQGWE--------------------------------------------------------- 112 (280)
T ss_dssp ---------CCSSCEEEEESCGG---------------------------------------------------------
T ss_pred ---------ccccchhhhhhhhh---------------------------------------------------------
Confidence 01122322211111
Q ss_pred hhhhhcccccCCCCccEEEEecccccc--CCHHHHHHHHHHhcCCCCeEEEEEEc-------------------------
Q 024311 175 AWERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATK------------------------- 227 (269)
Q Consensus 175 ~W~~~~~~~~~~~~fDlIlasD~iY~~--~~~~~L~~~l~~~L~~p~g~~~va~k------------------------- 227 (269)
..+++||.|++.+++.+. ..++.+++.+.++|+ |+|+++|-+-
T Consensus 113 ---------~~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lk-pgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~df 182 (280)
T d2fk8a1 113 ---------DFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMP-ADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKF 182 (280)
T ss_dssp ---------GCCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSC-TTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------hhccchhhhhHhhHHHHhhhhhHHHHHHHHHhccC-CCceEEEEEeeccCcchhhhcccccccccccccch
Confidence 134689999999999987 466899999999999 9999988431
Q ss_pred --ccccc--cCcchHHHHHHhhhcCceeE
Q 024311 228 --KNYVG--FNNAARHLRSLVDEEGIFGA 252 (269)
Q Consensus 228 --~~~fg--~~~~~~~F~~~~~~~g~~~~ 252 (269)
++-|. .=.+..++...++..||...
T Consensus 183 I~kyifPgg~lPS~~~l~~~~e~aGf~v~ 211 (280)
T d2fk8a1 183 IVTEIFPGGRLPSTEMMVEHGEKAGFTVP 211 (280)
T ss_dssp HHHHTSTTCCCCCHHHHHHHHHHTTCBCC
T ss_pred hhhhccCCCcccchHhhhhhHHhhccccc
Confidence 11121 11256788888999997433
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.22 E-value=2.9e-11 Score=104.09 Aligned_cols=108 Identities=24% Similarity=0.149 Sum_probs=76.9
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
-++++|||||||+|.....++..+..+|+++|.++++|+.+ +...... ....++.|..
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A-----~~r~~~~-----------------~~~~~v~f~~ 80 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDA-----RVRARNM-----------------KRRFKVFFRA 80 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHH-----HHHHHTS-----------------CCSSEEEEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHH-----HHHHHhc-----------------CCCcceEEEE
Confidence 36889999999999777777777887899999999998543 2111100 1224677766
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|....+ .....+||+|+
T Consensus 81 ~D~~~~~--------------------------------------------------------------~~~~~~fD~V~ 98 (252)
T d1ri5a_ 81 QDSYGRH--------------------------------------------------------------MDLGKEFDVIS 98 (252)
T ss_dssp SCTTTSC--------------------------------------------------------------CCCSSCEEEEE
T ss_pred cchhhhc--------------------------------------------------------------ccccccceEEE
Confidence 6643221 01345899999
Q ss_pred Eecccccc----CCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 194 LTEIPYSV----TSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 194 asD~iY~~----~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
+..++++. +....+++.+.++|+ |+|++++..
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~i~~~Lk-~gG~~i~~~ 134 (252)
T d1ri5a_ 99 SQFSFHYAFSTSESLDIAQRNIARHLR-PGGYFIMTV 134 (252)
T ss_dssp EESCGGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred EcceeeecCCCHHHHHHHHHHHhceeC-CCCEEEEEe
Confidence 99998764 345678899999999 899988753
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.20 E-value=1.5e-10 Score=97.20 Aligned_cols=48 Identities=29% Similarity=0.352 Sum_probs=41.7
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHH
Q 024311 32 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLE 84 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~ 84 (269)
..++|++|||||||||..++.|+..|+.+|++.|+++.++ ..++.|+.
T Consensus 43 ~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~-----~~a~~N~~ 90 (201)
T d1wy7a1 43 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAV-----DVLIENLG 90 (201)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHH-----HHHHHHTG
T ss_pred CCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHH-----HHHHHHHH
Confidence 4678999999999999999999999998999999999998 44556653
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=3.1e-11 Score=103.10 Aligned_cols=69 Identities=12% Similarity=-0.007 Sum_probs=49.9
Q ss_pred CCCCccEEEEecccccc----CCHHHHHHHHHHhcCCCCeEEEEEEcccc--c--------ccCcchHHHHHHhhhcCce
Q 024311 185 GEGGYDVILLTEIPYSV----TSLKKLYLLIKKCLRPPYGVVYLATKKNY--V--------GFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~----~~~~~L~~~l~~~L~~p~g~~~va~k~~~--f--------g~~~~~~~F~~~~~~~g~~ 250 (269)
..++||+|++..++.+. +.+..+++.+.++|+ |+|.+++...... + ...-...++.+.+++.||-
T Consensus 149 ~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lk-pGG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 227 (257)
T d2a14a1 149 VLPLADCVLTLLAMECACCSLDAYRAALCNLASLLK-PGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFD 227 (257)
T ss_dssp CCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEE
T ss_pred cCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccC-CCcEEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCE
Confidence 56789999999998765 356678899999999 8998887642211 0 0112578899999999985
Q ss_pred eEEE
Q 024311 251 GAHL 254 (269)
Q Consensus 251 ~~~~ 254 (269)
..++
T Consensus 228 v~~~ 231 (257)
T d2a14a1 228 IEQL 231 (257)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4444
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.17 E-value=6.6e-11 Score=97.99 Aligned_cols=111 Identities=17% Similarity=0.174 Sum_probs=80.5
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
.++|++||||+||+|..|+.|+..||++|++.|.+++++ ..++.|+.... ...+++++
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~-----~~~~~N~~~~~-----------------~~~~~~i~ 96 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAAL-----KVIKENIAITK-----------------EPEKFEVR 96 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHH-----HHHHHHHHHHT-----------------CGGGEEEE
T ss_pred hcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHH-----HHHHHHhhhhh-----------------cccccccc
Confidence 468999999999999999999999999999999999988 55666665431 11244444
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
..|....- .. ......+||+|
T Consensus 97 ~~D~~~~l---------------------------------------------------------~~--~~~~~~~fDlI 117 (182)
T d2fhpa1 97 KMDANRAL---------------------------------------------------------EQ--FYEEKLQFDLV 117 (182)
T ss_dssp ESCHHHHH---------------------------------------------------------HH--HHHTTCCEEEE
T ss_pred cccchhhh---------------------------------------------------------hh--hcccCCCcceE
Confidence 44422110 00 00134589999
Q ss_pred EEeccccccCCHHHHHHHHHH--hcCCCCeEEEEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKK--CLRPPYGVVYLAT 226 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~--~L~~p~g~~~va~ 226 (269)
+. |..|....+..+++.|.. +|+ ++|++++-+
T Consensus 118 fl-DPPY~~~~~~~~l~~i~~~~~L~-~~giIi~E~ 151 (182)
T d2fhpa1 118 LL-DPPYAKQEIVSQLEKMLERQLLT-NEAVIVCET 151 (182)
T ss_dssp EE-CCCGGGCCHHHHHHHHHHTTCEE-EEEEEEEEE
T ss_pred Ee-chhhhhhHHHHHHHHHHHCCCCC-CCEEEEEEc
Confidence 97 999999988888888765 577 889888754
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.16 E-value=8e-11 Score=96.46 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=39.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.+|.+|||+|||+|..|+.|+..|+ +|++.|.++.+++ .++.|+..
T Consensus 40 ~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~-----~~~~N~~~ 85 (171)
T d1ws6a1 40 PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVR-----LLKENVRR 85 (171)
T ss_dssp TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHH-----HHHHHHHH
T ss_pred cCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHh-----hhhHHHHh
Confidence 3788999999999999999999998 7999999999984 45555544
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.16 E-value=1.6e-10 Score=95.96 Aligned_cols=71 Identities=13% Similarity=0.178 Sum_probs=53.5
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccc-------c------c-C----cchHHHHHHhhh
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYV-------G------F-N----NAARHLRSLVDE 246 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~f-------g------~-~----~~~~~F~~~~~~ 246 (269)
.+++||+|+++.++++..+...+++.+.++|+ |+|.+++....... . . . -+..+..+.+++
T Consensus 88 ~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~-pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~ 166 (208)
T d1vlma_ 88 KDESFDFALMVTTICFVDDPERALKEAYRILK-KGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRK 166 (208)
T ss_dssp CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEE-EEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhhhhcCC-CCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHH
Confidence 34689999999999999999999999999998 89998887532110 0 0 0 135678889999
Q ss_pred cCceeEEEEe
Q 024311 247 EGIFGAHLIK 256 (269)
Q Consensus 247 ~g~~~~~~~~ 256 (269)
.||-..++..
T Consensus 167 ~Gf~~i~v~~ 176 (208)
T d1vlma_ 167 AGFEEFKVVQ 176 (208)
T ss_dssp TTCEEEEEEE
T ss_pred cCCeEEEEEE
Confidence 9985555433
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.15 E-value=4.8e-10 Score=96.09 Aligned_cols=157 Identities=13% Similarity=0.099 Sum_probs=99.9
Q ss_pred CceeeccHH-HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 9 FLKCWESSI-DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 9 G~~vW~as~-~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
.+++|+.-. -||.-|..... .-..-.|.+|||||||+|.....+|..+ ..+|++.|+++.+++. +..+...
T Consensus 48 e~r~w~p~rsklaA~i~~gl~-~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~-----a~~~a~~- 120 (230)
T d1g8sa_ 48 EYRIWNPNKSKLAAAIIKGLK-VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRE-----LLDACAE- 120 (230)
T ss_dssp EEEECCTTTCHHHHHHHTTCC-CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHH-----HHHHTTT-
T ss_pred eeeeECCCccHHHHHHHhhHH-hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHH-----HHHHHhh-
Confidence 477888665 56655554321 1123468999999999999887777654 3589999999999843 3222210
Q ss_pred hhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccc
Q 024311 87 RERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRR 166 (269)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 166 (269)
.+++.++.+|....+
T Consensus 121 -------------------~~ni~~i~~d~~~~~---------------------------------------------- 135 (230)
T d1g8sa_ 121 -------------------RENIIPILGDANKPQ---------------------------------------------- 135 (230)
T ss_dssp -------------------CTTEEEEECCTTCGG----------------------------------------------
T ss_pred -------------------hcccceEEEeeccCc----------------------------------------------
Confidence 123333333333211
Q ss_pred cccccCchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCc-c---hHHHHH
Q 024311 167 SRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNN-A---ARHLRS 242 (269)
Q Consensus 167 ~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~-~---~~~F~~ 242 (269)
......+|+++....++++...+.++..++++|+ |+|.++++.+.+...... . ..+-.+
T Consensus 136 ----------------~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LK-pgG~~~i~~k~~~~d~~~~~~~~~~e~~~ 198 (230)
T d1g8sa_ 136 ----------------EYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLK-KGGYGMIAIKARSIDVTKDPKEIFKEQKE 198 (230)
T ss_dssp ----------------GGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEE-EEEEEEEEEEGGGTCSSSCHHHHHHHHHH
T ss_pred ----------------ccccccceeEEeeccccchHHHHHHHHHHHHhcc-cCceEEEEeeccccCCCCCHHHHHHHHHH
Confidence 0123456776666678888889999999999999 999999887665433221 1 234446
Q ss_pred HhhhcCceeEEE
Q 024311 243 LVDEEGIFGAHL 254 (269)
Q Consensus 243 ~~~~~g~~~~~~ 254 (269)
.+++.||-..+.
T Consensus 199 ~L~~aGF~ive~ 210 (230)
T d1g8sa_ 199 ILEAGGFKIVDE 210 (230)
T ss_dssp HHHHHTEEEEEE
T ss_pred HHHHcCCEEEEE
Confidence 677889743333
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=5.2e-10 Score=98.38 Aligned_cols=144 Identities=14% Similarity=0.186 Sum_probs=94.7
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCC
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQP 94 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~ 94 (269)
+..|+++..... .-++.+|||||||+|..++.++. ....+|+++|+++..++ ..+.|+..+.
T Consensus 94 TE~lv~~~l~~~-----~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~-----~A~~Na~~~~------- 156 (274)
T d2b3ta1 94 TECLVEQALARL-----PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVS-----LAQRNAQHLA------- 156 (274)
T ss_dssp HHHHHHHHHHHS-----CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHH-----HHHHHHHHHT-------
T ss_pred hhhhhhhHhhhh-----cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHh-----HHHHHHHHhC-------
Confidence 446666665543 23567999999999999988765 44469999999999994 4455554431
Q ss_pred CCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCch
Q 024311 95 ESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSR 174 (269)
Q Consensus 95 ~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~ 174 (269)
+ .+++++.+||-+.
T Consensus 157 ----------~-~~v~~~~~d~~~~------------------------------------------------------- 170 (274)
T d2b3ta1 157 ----------I-KNIHILQSDWFSA------------------------------------------------------- 170 (274)
T ss_dssp ----------C-CSEEEECCSTTGG-------------------------------------------------------
T ss_pred ----------c-ccceeeecccccc-------------------------------------------------------
Confidence 1 2578887877541
Q ss_pred hhhhhcccccCCCCccEEEEeccccccC--------------------------CHHHHHHHHHHhcCCCCeEEEEEEcc
Q 024311 175 AWERASEADQGEGGYDVILLTEIPYSVT--------------------------SLKKLYLLIKKCLRPPYGVVYLATKK 228 (269)
Q Consensus 175 ~W~~~~~~~~~~~~fDlIlasD~iY~~~--------------------------~~~~L~~~l~~~L~~p~g~~~va~k~ 228 (269)
....+||+|++ ...|-+. .+..++....++|+ |+|.+++-...
T Consensus 171 ---------~~~~~fDlIvs-NPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~-~~G~l~lEig~ 239 (274)
T d2b3ta1 171 ---------LAGQQFAMIVS-NPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV-SGGFLLLEHGW 239 (274)
T ss_dssp ---------GTTCCEEEEEE-CCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE-EEEEEEEECCS
T ss_pred ---------cCCCceeEEEe-cchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcC-CCCEEEEEECc
Confidence 12348888887 3444332 23446666667888 88988875322
Q ss_pred cccccCcchHHHHHHhhhcCceeEEEEeeec
Q 024311 229 NYVGFNNAARHLRSLVDEEGIFGAHLIKEMT 259 (269)
Q Consensus 229 ~~fg~~~~~~~F~~~~~~~g~~~~~~~~~~~ 259 (269)
+....-.+.+++.||...++..+..
T Consensus 240 ------~q~~~v~~~l~~~gf~~i~~~kDl~ 264 (274)
T d2b3ta1 240 ------QQGEAVRQAFILAGYHDVETCRDYG 264 (274)
T ss_dssp ------SCHHHHHHHHHHTTCTTCCEEECTT
T ss_pred ------hHHHHHHHHHHHCCCCeEEEEECCC
Confidence 1245666778888986666666554
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.13 E-value=7.3e-10 Score=97.87 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=103.4
Q ss_pred CCCccCc-eeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHH-HcCCCeEEEEeCCHHHHHHhhHHHHHH
Q 024311 4 SKPDGFL-KCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIRCTTVPNVLA 81 (269)
Q Consensus 4 g~ye~G~-~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa-~~ga~~Vv~tD~~~~vl~~~~~~Nl~~ 81 (269)
|.|+++- .+=+|-..+.+++.+.. ..-.|.+|||||||.|-+++.+| ..|+ +|++.+++++.++.+ +.
T Consensus 34 g~~~~~~~tL~eAQ~~k~~~~~~~l----~l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a-----~~ 103 (285)
T d1kpga_ 34 AYFERDDMTLQEAQIAKIDLALGKL----GLQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHV-----QQ 103 (285)
T ss_dssp CCCSSTTCCHHHHHHHHHHHHHTTT----TCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHH-----HH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHc----CCCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHH-----HH
Confidence 4454332 23345566667777764 24578999999999999998644 5676 999999999877432 22
Q ss_pred HHHHhhhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccC
Q 024311 82 NLEQARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQD 161 (269)
Q Consensus 82 N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 161 (269)
..... .+..++++...|+..
T Consensus 104 ~~~~~-----------------g~~~~v~~~~~d~~~------------------------------------------- 123 (285)
T d1kpga_ 104 LVANS-----------------ENLRSKRVLLAGWEQ------------------------------------------- 123 (285)
T ss_dssp HHHTC-----------------CCCSCEEEEESCGGG-------------------------------------------
T ss_pred HHHhh-----------------hhhhhhHHHHhhhhc-------------------------------------------
Confidence 22110 123455555444332
Q ss_pred CcccccccccCchhhhhhcccccCCCCccEEEEecccccc--CCHHHHHHHHHHhcCCCCeEEEEEEc------------
Q 024311 162 SSSRRSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSV--TSLKKLYLLIKKCLRPPYGVVYLATK------------ 227 (269)
Q Consensus 162 ~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~--~~~~~L~~~l~~~L~~p~g~~~va~k------------ 227 (269)
.+++||-|++-+.+-+. ..++.+++.+.++|+ |+|+++|-+-
T Consensus 124 -----------------------~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lk-pgG~~~l~~i~~~~~~~~~~~~ 179 (285)
T d1kpga_ 124 -----------------------FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLP-ADGVMLLHTITGLHPKEIHERG 179 (285)
T ss_dssp -----------------------CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSC-TTCEEEEEEEEECCHHHHTTTT
T ss_pred -----------------------ccccccceeeehhhhhcCchhHHHHHHHHHhhcC-CCCcEEEEEEeccCchhhcccc
Confidence 23589999999999887 567899999999998 8999886321
Q ss_pred ---------------ccccccC--cchHHHHHHhhhcCceeEEE
Q 024311 228 ---------------KNYVGFN--NAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 228 ---------------~~~fg~~--~~~~~F~~~~~~~g~~~~~~ 254 (269)
++-|.-+ .+..++...+++.||...++
T Consensus 180 ~~~~~~~~~~~~fi~kyiFpgg~lPsl~~~~~~~e~agf~v~~~ 223 (285)
T d1kpga_ 180 LPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRV 223 (285)
T ss_dssp CSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEE
T ss_pred CCcchhhhchhhHHHHHhccCCCCCChhhHHHHHHHhchhhccc
Confidence 0112211 25678888899999744333
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.13 E-value=1e-09 Score=94.49 Aligned_cols=131 Identities=16% Similarity=0.220 Sum_probs=88.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
..++|||+|||+|...+.++... ..++++.|+ +++++ ..+.+.... .+..++++..
T Consensus 80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~-----~a~~~~~~~-----------------~~~~rv~~~~ 136 (253)
T d1tw3a2 80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVD-----TARSYLKDE-----------------GLSDRVDVVE 136 (253)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHH-----HHHHHHHHT-----------------TCTTTEEEEE
T ss_pred cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHH-----HHHHHHHHh-----------------hcccchhhcc
Confidence 45799999999999998877654 358999998 56763 334444321 1234566666
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+ ....+||+|+
T Consensus 137 ~D~~~-----------------------------------------------------------------~~~~~~D~v~ 151 (253)
T d1tw3a2 137 GDFFE-----------------------------------------------------------------PLPRKADAII 151 (253)
T ss_dssp CCTTS-----------------------------------------------------------------CCSSCEEEEE
T ss_pred ccchh-----------------------------------------------------------------hcccchhhee
Confidence 55321 1234799999
Q ss_pred EeccccccCCH--HHHHHHHHHhcCCCCeEEEEEEcccc-------------------c-ccCcchHHHHHHhhhcCcee
Q 024311 194 LTEIPYSVTSL--KKLYLLIKKCLRPPYGVVYLATKKNY-------------------V-GFNNAARHLRSLVDEEGIFG 251 (269)
Q Consensus 194 asD~iY~~~~~--~~L~~~l~~~L~~p~g~~~va~k~~~-------------------f-g~~~~~~~F~~~~~~~g~~~ 251 (269)
.+.++++...- ..+++.+.+.|+ |+|+++|.-.... + |...+..+|..++++.||-.
T Consensus 152 ~~~vlh~~~d~~~~~~L~~~~~~Lk-PGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~ 230 (253)
T d1tw3a2 152 LSFVLLNWPDHDAVRILTRCAEALE-PGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVV 230 (253)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHTEE-EEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEE
T ss_pred eccccccCCchhhHHHHHHHHHhcC-CCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeE
Confidence 99999986543 467899999998 9999888632110 0 01125678889999999754
Q ss_pred EEE
Q 024311 252 AHL 254 (269)
Q Consensus 252 ~~~ 254 (269)
.++
T Consensus 231 ~~v 233 (253)
T d1tw3a2 231 EEV 233 (253)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.12 E-value=9.9e-10 Score=97.27 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=41.6
Q ss_pred ccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHH-HcCCCeEEEEeCCHHHHHH
Q 024311 14 ESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 14 ~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa-~~ga~~Vv~tD~~~~vl~~ 73 (269)
+|-..+.+++.+.. ..-.|.+|||||||.|-+.+.+| ..|+ +|++.|++++.+..
T Consensus 44 ~Aq~~k~~~~~~~l----~l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~ 99 (291)
T d1kpia_ 44 EAQYAKRKLALDKL----NLEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAH 99 (291)
T ss_dssp HHHHHHHHHHHHTT----CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHHhc----CCCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHH
Confidence 34455566666653 24579999999999999888665 5676 89999999987744
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.12 E-value=8e-11 Score=95.60 Aligned_cols=50 Identities=24% Similarity=0.200 Sum_probs=41.3
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.|-+|+... ...+|.+|||+|||+|-.++.+|..|. +|++.|+++.+++.
T Consensus 8 ~~~~~~~~l-----~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~ 57 (201)
T d1pjza_ 8 DLQQYWSSL-----NVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVER 57 (201)
T ss_dssp HHHHHHHHH-----CCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHH
T ss_pred HHHHHHHHc-----CCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHH
Confidence 355566554 244789999999999999999999998 89999999999854
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.11 E-value=3.8e-10 Score=97.99 Aligned_cols=125 Identities=14% Similarity=0.194 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH 110 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 110 (269)
...|.+|||+|||+|..++.+|+. + ..+|+..|.+++.++ ..+.|+.... ...+++
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~-----~A~~n~~~~~-----------------~~~nv~ 140 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLK-----KAMDNLSEFY-----------------DIGNVR 140 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHH-----HHHHHHHTTS-----------------CCTTEE
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHH-----HHHHHHHHhc-----------------CCCceE
Confidence 347899999999999999887753 3 358999999999984 4555654320 123566
Q ss_pred eecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 024311 111 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 190 (269)
Q Consensus 111 ~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fD 190 (269)
+..+|..+. ..+..||
T Consensus 141 ~~~~Di~~~----------------------------------------------------------------~~~~~fD 156 (250)
T d1yb2a1 141 TSRSDIADF----------------------------------------------------------------ISDQMYD 156 (250)
T ss_dssp EECSCTTTC----------------------------------------------------------------CCSCCEE
T ss_pred EEEeeeecc----------------------------------------------------------------cccceee
Confidence 655554321 1345899
Q ss_pred EEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEE
Q 024311 191 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 191 lIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
.|+. |+ ......+..+.++|+ |+|++.+-..-. ..+++..+.+++.||...++
T Consensus 157 ~V~l-d~----p~p~~~l~~~~~~LK-pGG~lv~~~P~i-----~Qv~~~~~~l~~~gf~~i~~ 209 (250)
T d1yb2a1 157 AVIA-DI----PDPWNHVQKIASMMK-PGSVATFYLPNF-----DQSEKTVLSLSASGMHHLET 209 (250)
T ss_dssp EEEE-CC----SCGGGSHHHHHHTEE-EEEEEEEEESSH-----HHHHHHHHHSGGGTEEEEEE
T ss_pred eeee-cC----CchHHHHHHHHHhcC-CCceEEEEeCCc-----ChHHHHHHHHHHCCCceeEE
Confidence 9986 43 334456777888998 899876654432 24788999999999865555
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.4e-10 Score=98.52 Aligned_cols=54 Identities=20% Similarity=0.159 Sum_probs=45.3
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
..-.|.+++.+... ...+.+|||+|||+|..++.+|..|. +|++.|+++.+++.
T Consensus 29 ~~~~l~~~~~~~l~----~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~ 82 (229)
T d2bzga1 29 GHQLLKKHLDTFLK----GKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQE 82 (229)
T ss_dssp CCHHHHHHHHHHHT----TCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHH
T ss_pred CCHHHHHHHHHhcC----CCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHH
Confidence 45678888877542 33788999999999999999999998 89999999999854
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=1.1e-10 Score=99.47 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=34.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+|++|||+|||+|.....++..++.+|++.|.++.+++.
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~ 91 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQR 91 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHH
T ss_pred CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHH
Confidence 688999999999999988887776789999999999854
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.06 E-value=3.4e-09 Score=89.27 Aligned_cols=133 Identities=14% Similarity=0.029 Sum_probs=85.0
Q ss_pred cCceeeccHH-HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 8 GFLKCWESSI-DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 8 ~G~~vW~as~-~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|++.|+.-. -||..+.... .-..-.|.+|||||||+|.....++. .+..+|++.|+++.+++. ++.+...
T Consensus 30 ~~~r~w~p~rsklaa~i~~g~--~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~-----a~~~a~~ 102 (209)
T d1nt2a_ 30 DGYREWVPWRSKLAAMILKGH--RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEK-----LLELVRE 102 (209)
T ss_dssp TTEEECCGGGCHHHHHHHTSC--CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHH-----HHHHHHH
T ss_pred cceeeeCCcchHHHHHHhccc--cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHH-----HHHHhhc
Confidence 4678888443 4455554421 11244688999999999988876665 455689999999999954 3333321
Q ss_pred hhhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCccc
Q 024311 86 ARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSR 165 (269)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 165 (269)
. .++.+...|....+..
T Consensus 103 ~--------------------~ni~~i~~d~~~~~~~------------------------------------------- 119 (209)
T d1nt2a_ 103 R--------------------NNIIPLLFDASKPWKY------------------------------------------- 119 (209)
T ss_dssp C--------------------SSEEEECSCTTCGGGT-------------------------------------------
T ss_pred c--------------------CCceEEEeeccCcccc-------------------------------------------
Confidence 1 2445544443332100
Q ss_pred ccccccCchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccc
Q 024311 166 RSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNY 230 (269)
Q Consensus 166 ~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~ 230 (269)
......+|+|+. | ++++...+.+++.+.++|+ |+|.++++.+.+-
T Consensus 120 -----------------~~~~~~vd~v~~-~-~~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~~~~ 164 (209)
T d1nt2a_ 120 -----------------SGIVEKVDLIYQ-D-IAQKNQIEILKANAEFFLK-EKGEVVIMVKARS 164 (209)
T ss_dssp -----------------TTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHEE-EEEEEEEEEEHHH
T ss_pred -----------------ccccceEEEEEe-c-ccChhhHHHHHHHHHHHhc-cCCeEEEEEEccc
Confidence 012235676654 4 5667778889999999999 9999998876543
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.03 E-value=9.2e-10 Score=98.60 Aligned_cols=127 Identities=20% Similarity=0.215 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+|++||||+||+|..|+.|+..|+++|+..|.++..++. .+.|+..|. + ...+++++.
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~-----a~~N~~~n~----------l------~~~~~~~i~ 201 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRAL-----SLAHFEANH----------L------DMANHQLVV 201 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHH-----HHHHHHHTT----------C------CCTTEEEEE
T ss_pred hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHH-----HHHHHHHhc----------c------cCcceEEEE
Confidence 4789999999999999999999999999999999998844 455555542 0 012455555
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|-.+ |=.. ......+||+||
T Consensus 202 ~d~~~---------------------------------------------------------~l~~--~~~~~~~fD~Ii 222 (317)
T d2b78a2 202 MDVFD---------------------------------------------------------YFKY--ARRHHLTYDIII 222 (317)
T ss_dssp SCHHH---------------------------------------------------------HHHH--HHHTTCCEEEEE
T ss_pred ccHHH---------------------------------------------------------HHHH--HHhhcCCCCEEE
Confidence 44211 0000 002346899999
Q ss_pred Eecccccc----------CCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhh
Q 024311 194 LTEIPYSV----------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDE 246 (269)
Q Consensus 194 asD~iY~~----------~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~ 246 (269)
. |..... ..+..|+....++|+ |+|++++++....+ +.++|.+.+++
T Consensus 223 ~-DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~-pgG~l~~~scs~~~----~~~~f~~~v~~ 279 (317)
T d2b78a2 223 I-DPPSFARNKKEVFSVSKDYHKLIRQGLEILS-ENGLIIASTNAANM----TVSQFKKQIEK 279 (317)
T ss_dssp E-CCCCC-----CCCCHHHHHHHHHHHHHHTEE-EEEEEEEEECCTTS----CHHHHHHHHHH
T ss_pred E-cChhhccchhHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEeCCccC----CHHHHHHHHHH
Confidence 8 544321 135567777778888 89999999877655 46788777654
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=7.2e-10 Score=96.17 Aligned_cols=66 Identities=17% Similarity=0.102 Sum_probs=46.3
Q ss_pred CCCCccEEEEecccccc----CCHHHHHHHHHHhcCCCCeEEEEEEccc--ccc--------cCcchHHHHHHhhhcCce
Q 024311 185 GEGGYDVILLTEIPYSV----TSLKKLYLLIKKCLRPPYGVVYLATKKN--YVG--------FNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~----~~~~~L~~~l~~~L~~p~g~~~va~k~~--~fg--------~~~~~~~F~~~~~~~g~~ 250 (269)
..++||+|+++-|+.+. ..+..+++.+.++|| |+|.+++...-. ++. ..-+.++..+.+++.||.
T Consensus 154 ~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~Lk-PGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~ 232 (263)
T d2g72a1 154 APLPADALVSAFCLEAVSPDLASFQRALDHITTLLR-PGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYK 232 (263)
T ss_dssp SCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEE-EEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEE
T ss_pred CcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcC-CCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCCCe
Confidence 35689999999988654 256677888888998 899887753211 111 112568888999999974
Q ss_pred e
Q 024311 251 G 251 (269)
Q Consensus 251 ~ 251 (269)
.
T Consensus 233 v 233 (263)
T d2g72a1 233 V 233 (263)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.02 E-value=4.6e-10 Score=92.72 Aligned_cols=112 Identities=20% Similarity=0.310 Sum_probs=79.4
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
+.+.+||||.||||.+|+.|+..||++|++.|.+...+ ..++.|+..... ....+.+..
T Consensus 42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~-----~~ik~Ni~~l~~----------------~~~~~~~~~ 100 (183)
T d2ifta1 42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVA-----NQLKKNLQTLKC----------------SSEQAEVIN 100 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHH-----HHHHHHHHHTTC----------------CTTTEEEEC
T ss_pred cccceEeecccCccceeeeeeeecceeeEEeecccchh-----hhHhhHHhhhcc----------------ccccccccc
Confidence 57889999999999999999999999999999999988 566777654210 001111111
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
.|... |-. ......+||+|+
T Consensus 101 ~d~~~---------------------------------------------------------~l~---~~~~~~~fDlIF 120 (183)
T d2ifta1 101 QSSLD---------------------------------------------------------FLK---QPQNQPHFDVVF 120 (183)
T ss_dssp SCHHH---------------------------------------------------------HTT---SCCSSCCEEEEE
T ss_pred ccccc---------------------------------------------------------ccc---ccccCCcccEEE
Confidence 11000 000 001345799998
Q ss_pred EeccccccCCHHHHHHHHHH--hcCCCCeEEEEEEcc
Q 024311 194 LTEIPYSVTSLKKLYLLIKK--CLRPPYGVVYLATKK 228 (269)
Q Consensus 194 asD~iY~~~~~~~L~~~l~~--~L~~p~g~~~va~k~ 228 (269)
. |..|.....+.++..|.. +|+ ++|++++-+.+
T Consensus 121 l-DPPY~~~~~~~~l~~l~~~~~L~-~~~liiiE~~~ 155 (183)
T d2ifta1 121 L-DPPFHFNLAEQAISLLCENNWLK-PNALIYVETEK 155 (183)
T ss_dssp E-CCCSSSCHHHHHHHHHHHTTCEE-EEEEEEEEEES
T ss_pred e-chhHhhhhHHHHHHHHHHhCCcC-CCcEEEEEecC
Confidence 8 999999999999998876 577 88998886544
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=5.6e-10 Score=97.88 Aligned_cols=39 Identities=28% Similarity=0.502 Sum_probs=35.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~ 74 (269)
.+++|||||||+|..++.++..|. +|++.|+++.+|+.+
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A 94 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYA 94 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHH
Confidence 467999999999999999999987 899999999999654
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.02 E-value=3.7e-10 Score=101.16 Aligned_cols=124 Identities=23% Similarity=0.267 Sum_probs=82.9
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+|++||||+||+|..++.+|. |+.+|+..|.++..++. .+.|+..|. + .+++++.
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~-----a~~n~~~ng-----------------l-~~~~~i~ 199 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRR-----AEENARLNG-----------------L-GNVRVLE 199 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHH-----HHHHHHHTT-----------------C-TTEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHH-----HHHHHHHcC-----------------C-CCcceee
Confidence 4799999999999999998875 55699999999999944 455555441 1 2455655
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|..+... .. ....++||+||
T Consensus 200 ~d~~~~~~---------------------------------------------------------~~--~~~~~~fD~Vi 220 (318)
T d1wxxa2 200 ANAFDLLR---------------------------------------------------------RL--EKEGERFDLVV 220 (318)
T ss_dssp SCHHHHHH---------------------------------------------------------HH--HHTTCCEEEEE
T ss_pred ccHHHHhh---------------------------------------------------------hh--HhhhcCCCEEE
Confidence 55332110 00 02456899999
Q ss_pred Eecccccc----------CCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhh
Q 024311 194 LTEIPYSV----------TSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDE 246 (269)
Q Consensus 194 asD~iY~~----------~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~ 246 (269)
. |..+.. ..+..|+....++|+ |+|++++++....+ +..+|.+.+.+
T Consensus 221 ~-DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLk-pGG~Lv~~scs~~~----~~~~f~~~v~~ 277 (318)
T d1wxxa2 221 L-DPPAFAKGKKDVERAYRAYKEVNLRAIKLLK-EGGILATASCSHHM----TEPLFYAMVAE 277 (318)
T ss_dssp E-CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEE-EEEEEEEEECCTTS----CHHHHHHHHHH
T ss_pred E-cCCccccchHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEeCCccc----CHHHHHHHHHH
Confidence 8 554432 123346666777888 89998888766543 46778777653
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=3.6e-10 Score=98.25 Aligned_cols=41 Identities=12% Similarity=0.197 Sum_probs=37.3
Q ss_pred CCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEE
Q 024311 185 GEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 185 ~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
...+||+|+++.++|+..+.+.+++.+.++|+ |+|.++|..
T Consensus 120 ~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~i~~ 160 (280)
T d1jqea_ 120 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLG-TNAKMLIIV 160 (280)
T ss_dssp SCCCEEEEEEESCGGGCSCHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred CCCceeEEEEccceecCCCHHHHHHHHHhhCC-CCCEEEEEE
Confidence 56799999999999999999999999999999 899887764
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=98.98 E-value=2.2e-09 Score=93.40 Aligned_cols=41 Identities=22% Similarity=0.167 Sum_probs=33.5
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~ 73 (269)
..++.+|||+|||+|.....++..++ .+|++.|+++.+++.
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~ 123 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKA 123 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHH
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhh
Confidence 34788999999999998877776543 489999999998853
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.93 E-value=7.3e-09 Score=90.09 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=40.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
+|.+|||+|||+|..++.+|+.|+.+|++.|.|+..++ -++.|+..|
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~-----~~~~N~~~n 153 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFK-----FLVENIHLN 153 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHH-----HHHHHHHHT
T ss_pred CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHH-----HHHHHHHHh
Confidence 68899999999999999999988779999999999984 455555554
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.93 E-value=6e-09 Score=90.98 Aligned_cols=133 Identities=17% Similarity=0.171 Sum_probs=88.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-CC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
-.|.+|||+|||+|..++.+|+. |+ .+|+..|.+++.+ ...+.|+..... ....++++
T Consensus 95 ~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~-----~~Ar~n~~~~~~---------------~~~~nv~~ 154 (264)
T d1i9ga_ 95 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHA-----EHARRNVSGCYG---------------QPPDNWRL 154 (264)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHH-----HHHHHHHHHHHT---------------SCCTTEEE
T ss_pred CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHH-----HHHHHhhhhhcc---------------CCCceEEE
Confidence 47899999999999999888764 43 5899999999998 455666643210 01235555
Q ss_pred ecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccE
Q 024311 112 YAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDV 191 (269)
Q Consensus 112 ~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDl 191 (269)
..+|-.+. ...++.||.
T Consensus 155 ~~~d~~~~---------------------------------------------------------------~~~~~~fDa 171 (264)
T d1i9ga_ 155 VVSDLADS---------------------------------------------------------------ELPDGSVDR 171 (264)
T ss_dssp ECSCGGGC---------------------------------------------------------------CCCTTCEEE
T ss_pred Eecccccc---------------------------------------------------------------cccCCCcce
Confidence 44432211 124568999
Q ss_pred EEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhc-CceeEEEEeeecCc
Q 024311 192 ILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEE-GIFGAHLIKEMTDR 261 (269)
Q Consensus 192 IlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~-g~~~~~~~~~~~~~ 261 (269)
|+. |+ ......+..+.++|+ |+|++.+-..... .+++.++.+++. ||...++ .|.-.|
T Consensus 172 V~l-dl----p~P~~~l~~~~~~Lk-pGG~lv~~~P~i~-----Qv~~~~~~l~~~~~f~~i~~-~E~l~R 230 (264)
T d1i9ga_ 172 AVL-DM----LAPWEVLDAVSRLLV-AGGVLMVYVATVT-----QLSRIVEALRAKQCWTEPRA-WETLQR 230 (264)
T ss_dssp EEE-ES----SCGGGGHHHHHHHEE-EEEEEEEEESSHH-----HHHHHHHHHHHHSSBCCCEE-ECCCCC
T ss_pred EEE-ec----CCHHHHHHHHHhccC-CCCEEEEEeCccC-----hHHHHHHHHHHcCCeecceE-EEEEEE
Confidence 986 43 344566777888998 8998776665442 478899999765 4544454 444433
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.92 E-value=1.1e-08 Score=89.31 Aligned_cols=132 Identities=17% Similarity=0.121 Sum_probs=87.8
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH 110 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 110 (269)
...|.+|||+|||+|..++.+|+. + ..+|+..|+++++++ ..+.|+.... +..++.
T Consensus 101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~-----~A~~~~~~~g-----------------~~~~v~ 158 (266)
T d1o54a_ 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAK-----LAESNLTKWG-----------------LIERVT 158 (266)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHH-----HHHHHHHHTT-----------------CGGGEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHH-----HHHHHHHHhc-----------------cccCcE
Confidence 458999999999999999888764 3 248999999999984 4455554321 112233
Q ss_pred eecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 024311 111 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 190 (269)
Q Consensus 111 ~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fD 190 (269)
+...|-. .......||
T Consensus 159 ~~~~d~~----------------------------------------------------------------~~~~~~~~D 174 (266)
T d1o54a_ 159 IKVRDIS----------------------------------------------------------------EGFDEKDVD 174 (266)
T ss_dssp EECCCGG----------------------------------------------------------------GCCSCCSEE
T ss_pred EEecccc----------------------------------------------------------------cccccccee
Confidence 2211100 002345788
Q ss_pred EEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEEEeeecCcc
Q 024311 191 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHLIKEMTDRD 262 (269)
Q Consensus 191 lIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~~~~~~~~~ 262 (269)
.|+. +.......++.+.++|+ |+|++.+-+.-. ..+++.++.+++.||...++ .|.-.|+
T Consensus 175 ~V~~-----d~p~p~~~l~~~~~~LK-pGG~lv~~~P~~-----~Qv~~~~~~l~~~gF~~i~~-~E~l~R~ 234 (266)
T d1o54a_ 175 ALFL-----DVPDPWNYIDKCWEALK-GGGRFATVCPTT-----NQVQETLKKLQELPFIRIEV-WESLFRP 234 (266)
T ss_dssp EEEE-----CCSCGGGTHHHHHHHEE-EEEEEEEEESSH-----HHHHHHHHHHHHSSEEEEEE-ECCCCCC
T ss_pred eeEe-----cCCCHHHHHHHHHhhcC-CCCEEEEEeCcc-----cHHHHHHHHHHHCCceeEEE-EEEEEEE
Confidence 8875 34556677888999999 899887655433 35788999999999866665 4544443
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=98.91 E-value=1.5e-08 Score=87.48 Aligned_cols=131 Identities=18% Similarity=0.165 Sum_probs=86.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
..++|||+|||+|.....++.+.+ .++++.|+ |+++ +..+.++... ....++.+..
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~-----~~a~~~~~~~-----------------~~~~ri~~~~ 137 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPA-----ERARRRFADA-----------------GLADRVTVAE 137 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHH-----HHHHHHHHHT-----------------TCTTTEEEEE
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHH-----HHHHHHHhhc-----------------CCcceeeeee
Confidence 347899999999999988777643 48999998 7777 4445554321 0123444443
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|-.. ..+.+||+|+
T Consensus 138 ~d~~~-----------------------------------------------------------------~~p~~~D~v~ 152 (256)
T d1qzza2 138 GDFFK-----------------------------------------------------------------PLPVTADVVL 152 (256)
T ss_dssp CCTTS-----------------------------------------------------------------CCSCCEEEEE
T ss_pred eeccc-----------------------------------------------------------------cccccchhhh
Confidence 33110 1234699999
Q ss_pred EeccccccCC--HHHHHHHHHHhcCCCCeEEEEEEccc------------cc---------ccCcchHHHHHHhhhcCce
Q 024311 194 LTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKN------------YV---------GFNNAARHLRSLVDEEGIF 250 (269)
Q Consensus 194 asD~iY~~~~--~~~L~~~l~~~L~~p~g~~~va~k~~------------~f---------g~~~~~~~F~~~~~~~g~~ 250 (269)
.+.++++.+. ...+++.+++.|+ |+|+++|.-... ++ |...+..+|.+++++.||-
T Consensus 153 ~~~vLh~~~d~~~~~lL~~i~~~Lk-pgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~ 231 (256)
T d1qzza2 153 LSFVLLNWSDEDALTILRGCVRALE-PGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLA 231 (256)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEE
T ss_pred ccccccccCcHHHHHHHHHHHhhcC-CcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCc
Confidence 9999997754 3567889999998 899888763211 00 1112567899999999984
Q ss_pred eEEE
Q 024311 251 GAHL 254 (269)
Q Consensus 251 ~~~~ 254 (269)
..++
T Consensus 232 ~~~~ 235 (256)
T d1qzza2 232 LASE 235 (256)
T ss_dssp EEEE
T ss_pred eeEE
Confidence 4444
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.85 E-value=1.2e-08 Score=90.90 Aligned_cols=46 Identities=30% Similarity=0.252 Sum_probs=39.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
++++||||+||||..|+.|+..|+ +|+..|.++..++ ..+.|+.+|
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~-----~a~~N~~ln 177 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIG-----WAKENQVLA 177 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHH-----HHHHHHHHH
T ss_pred CCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHH-----HHHHhhhhh
Confidence 688999999999999999999998 8999999999994 455565554
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.84 E-value=2.3e-08 Score=87.49 Aligned_cols=60 Identities=22% Similarity=0.223 Sum_probs=44.0
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHH
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVL 80 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~ 80 (269)
+..|++++.+..... ...+|||+|||+|..+++++.....+|+++|++++.++.+ ..|++
T Consensus 95 TE~lv~~~~~~~~~~----~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A-~~Na~ 154 (271)
T d1nv8a_ 95 TEELVELALELIRKY----GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIA-RKNAE 154 (271)
T ss_dssp HHHHHHHHHHHHHHH----TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHH-HHHHH
T ss_pred hhhhhhhhhhhhccc----cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHH-HHHHH
Confidence 455677666554321 3458999999999999888877767999999999999543 34443
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.84 E-value=5.5e-08 Score=82.85 Aligned_cols=157 Identities=17% Similarity=0.106 Sum_probs=92.6
Q ss_pred CceeeccHH-HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 9 FLKCWESSI-DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 9 G~~vW~as~-~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.+++|+.-. -||..|..-.. .-..-.|.+|||||||+|.....+|.. | ..+|++.|+++.+++. ++.+...
T Consensus 47 e~R~w~p~rSKlaa~i~~~l~-~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~-----a~~~a~~ 120 (227)
T d1g8aa_ 47 EYRIWNPNRSKLGAAIMNGLK-NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRE-----LVPIVEE 120 (227)
T ss_dssp EEEECCTTTCHHHHHHHTTCC-CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHH-----HHHHHSS
T ss_pred eEEEECCCccHHHHHHHcccc-ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHH-----HHHHHHh
Confidence 466776422 23344443221 123457899999999999888776653 4 3589999999999843 3333311
Q ss_pred hhhhhccCCCCCCCCCccCCCCeeeeecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCccc
Q 024311 86 ARERQSRQPESSLTPSRQTLAPSVHFYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSR 165 (269)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 165 (269)
. .++.....|-.....
T Consensus 121 ~--------------------~~~~~i~~d~~~~~~-------------------------------------------- 136 (227)
T d1g8aa_ 121 R--------------------RNIVPILGDATKPEE-------------------------------------------- 136 (227)
T ss_dssp C--------------------TTEEEEECCTTCGGG--------------------------------------------
T ss_pred c--------------------CCceEEEEECCCccc--------------------------------------------
Confidence 0 122222222111100
Q ss_pred ccccccCchhhhhhcccccCCCCccEEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcc---hHHHHH
Q 024311 166 RSRKLSGSRAWERASEADQGEGGYDVILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNA---ARHLRS 242 (269)
Q Consensus 166 ~~~~l~gs~~W~~~~~~~~~~~~fDlIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~---~~~F~~ 242 (269)
+ ......+|+|+. |+ ..+...+.+++.+++.|+ |+|.++++.+....+.... ......
T Consensus 137 ----------~------~~~~~~vD~i~~-d~-~~~~~~~~~l~~~~~~Lk-pgG~lvi~~ka~~~~~~~~~~~v~~~v~ 197 (227)
T d1g8aa_ 137 ----------Y------RALVPKVDVIFE-DV-AQPTQAKILIDNAEVYLK-RGGYGMIAVKSRSIDVTKEPEQVFREVE 197 (227)
T ss_dssp ----------G------TTTCCCEEEEEE-CC-CSTTHHHHHHHHHHHHEE-EEEEEEEEEEGGGTCTTSCHHHHHHHHH
T ss_pred ----------c------cccccceEEEEE-Ec-cccchHHHHHHHHHHhcc-cCCeEEEEEECCccCCCCCHHHHHHHHH
Confidence 0 013357898876 54 456678889999999999 8999999877655443332 233344
Q ss_pred HhhhcCceeEEE
Q 024311 243 LVDEEGIFGAHL 254 (269)
Q Consensus 243 ~~~~~g~~~~~~ 254 (269)
.+.+.||-..+.
T Consensus 198 ~l~~~gf~iie~ 209 (227)
T d1g8aa_ 198 RELSEYFEVIER 209 (227)
T ss_dssp HHHHTTSEEEEE
T ss_pred HHHHcCCEEEEE
Confidence 455678643443
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.81 E-value=7.4e-08 Score=80.65 Aligned_cols=107 Identities=12% Similarity=0.014 Sum_probs=72.7
Q ss_pred CCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeecC
Q 024311 36 GKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYAG 114 (269)
Q Consensus 36 ~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 114 (269)
+..|||||||+|-..+.+|... -..+++.|+++.++. .+..++... --.|+.+..+
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~-----~a~~~~~~~------------------~l~Nv~~~~~ 86 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIV-----TAVQKVKDS------------------EAQNVKLLNI 86 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHH-----HHHHHHHHS------------------CCSSEEEECC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHH-----HHHHHHHHH------------------hccCchhccc
Confidence 4589999999998887777654 358999999999884 333333221 0136777766
Q ss_pred CCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEEE
Q 024311 115 DWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVILL 194 (269)
Q Consensus 115 dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIla 194 (269)
|-..+.. ....+.+|.|+.
T Consensus 87 Da~~l~~-------------------------------------------------------------~~~~~~~d~v~i 105 (204)
T d2fcaa1 87 DADTLTD-------------------------------------------------------------VFEPGEVKRVYL 105 (204)
T ss_dssp CGGGHHH-------------------------------------------------------------HCCTTSCCEEEE
T ss_pred chhhhhc-------------------------------------------------------------ccCchhhhcccc
Confidence 6433210 023457887776
Q ss_pred eccccccCC--------HHHHHHHHHHhcCCCCeEEEEEEc
Q 024311 195 TEIPYSVTS--------LKKLYLLIKKCLRPPYGVVYLATK 227 (269)
Q Consensus 195 sD~iY~~~~--------~~~L~~~l~~~L~~p~g~~~va~k 227 (269)
.-...++.. .+.+++.+++.|+ |+|.++|++-
T Consensus 106 ~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lk-pgG~l~i~TD 145 (204)
T d2fcaa1 106 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMG-KGGSIHFKTD 145 (204)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHT-TSCEEEEEES
T ss_pred ccccccchhhhcchhhhHHHHHHHHHHhCC-CCcEEEEEEC
Confidence 555544443 2689999999999 9999999973
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=1.2e-07 Score=84.86 Aligned_cols=145 Identities=17% Similarity=0.145 Sum_probs=85.0
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHHc-CC-CeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeee
Q 024311 33 SFRGKRVLELSCGYGLPGIFACLK-GA-GTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVH 110 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~~-ga-~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 110 (269)
...|.+|||+|||+|..++.+|+. |+ .+|+..|++++.++. .+.|+.......... .......++.
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~-----A~~n~~~~~~~~~~~-------~~~~~~~nv~ 163 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDL-----AKKNYKHWRDSWKLS-------HVEEWPDNVD 163 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHH-----HHHHHHHHHHHHTTT-------CSSCCCCCEE
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHH-----HHHHHHHhhhhhhhh-------hhhcccccee
Confidence 347999999999999999887763 33 489999999999854 344443321110000 0011234556
Q ss_pred eecCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 024311 111 FYAGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 190 (269)
Q Consensus 111 ~~~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fD 190 (269)
+..+|...... ......||
T Consensus 164 ~~~~di~~~~~-------------------------------------------------------------~~~~~~fD 182 (324)
T d2b25a1 164 FIHKDISGATE-------------------------------------------------------------DIKSLTFD 182 (324)
T ss_dssp EEESCTTCCC--------------------------------------------------------------------EE
T ss_pred EEecchhhccc-------------------------------------------------------------ccCCCCcc
Confidence 55555332110 01345799
Q ss_pred EEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcC--ceeEEEEeeecCcc
Q 024311 191 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEG--IFGAHLIKEMTDRD 262 (269)
Q Consensus 191 lIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g--~~~~~~~~~~~~~~ 262 (269)
.|+. |+.- ....+..+.++|+ |+|++.+-..-.. .+...++.++..+ |...++ .|.-.|+
T Consensus 183 ~V~L-D~p~----P~~~l~~~~~~LK-pGG~lv~~~P~i~-----Qv~~~~~~l~~~~~~f~~i~~-~E~~~R~ 244 (324)
T d2b25a1 183 AVAL-DMLN----PHVTLPVFYPHLK-HGGVCAVYVVNIT-----QVIELLDGIRTCELALSCEKI-SEVIVRD 244 (324)
T ss_dssp EEEE-CSSS----TTTTHHHHGGGEE-EEEEEEEEESSHH-----HHHHHHHHHHHHTCCEEEEEE-ECCCCCC
T ss_pred eEee-cCcC----HHHHHHHHHHhcc-CCCEEEEEeCCHH-----HHHHHHHHHHHcCCCceeeEE-EEEEeee
Confidence 9987 6532 2235667788898 8998776554432 4678888888654 444444 5655544
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.76 E-value=4.1e-08 Score=82.57 Aligned_cols=41 Identities=27% Similarity=0.294 Sum_probs=33.3
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHH-cCC-CeEEEEeCCHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACL-KGA-GTVHFQDLSAETIRC 73 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~-~ga-~~Vv~tD~~~~vl~~ 73 (269)
.-+|.+|||+|||+|..+..+|+ .+. .+|+..|+++++++.
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~ 115 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEI 115 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHH
T ss_pred ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHH
Confidence 34788999999999999977765 332 489999999999844
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.68 E-value=1.6e-07 Score=78.54 Aligned_cols=107 Identities=15% Similarity=0.081 Sum_probs=71.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcC-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeeec
Q 024311 35 RGKRVLELSCGYGLPGIFACLKG-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFYA 113 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 113 (269)
.+..|||+|||+|-..+.+|... -..+++.|+++.++..+ ...+... .-.+++++.
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a-----~~~~~~~------------------~l~Ni~~~~ 87 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYA-----LDKVLEV------------------GVPNIKLLW 87 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHH-----HHHHHHH------------------CCSSEEEEE
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHH-----HHhhhhh------------------ccccceeee
Confidence 34579999999998877777654 45799999999988443 3333221 014678877
Q ss_pred CCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEEE
Q 024311 114 GDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVIL 193 (269)
Q Consensus 114 ~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlIl 193 (269)
+|...+... .....+|.|.
T Consensus 88 ~da~~l~~~-------------------------------------------------------------~~~~~~~~i~ 106 (204)
T d1yzha1 88 VDGSDLTDY-------------------------------------------------------------FEDGEIDRLY 106 (204)
T ss_dssp CCSSCGGGT-------------------------------------------------------------SCTTCCSEEE
T ss_pred cCHHHHhhh-------------------------------------------------------------ccCCceehhc
Confidence 776553210 1344678776
Q ss_pred EeccccccCC--------HHHHHHHHHHhcCCCCeEEEEEE
Q 024311 194 LTEIPYSVTS--------LKKLYLLIKKCLRPPYGVVYLAT 226 (269)
Q Consensus 194 asD~iY~~~~--------~~~L~~~l~~~L~~p~g~~~va~ 226 (269)
..-.-.++.. .+.+++.+.++|+ |+|.++++|
T Consensus 107 i~fPdPw~K~~h~krRl~~~~~l~~~~~~Lk-pgG~l~i~T 146 (204)
T d1yzha1 107 LNFSDPWPKKRHEKRRLTYKTFLDTFKRILP-ENGEIHFKT 146 (204)
T ss_dssp EESCCCCCSGGGGGGSTTSHHHHHHHHHHSC-TTCEEEEEE
T ss_pred ccccccccchhhhhhhhhHHHHHHHHHHhCC-CCcEEEEEE
Confidence 4333333321 2789999999999 999999987
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1.2e-07 Score=80.24 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCCCHHHHHHHH-cC-CCeEEEEeCCHHHHHHh
Q 024311 34 FRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~-~g-a~~Vv~tD~~~~vl~~~ 74 (269)
-+|.+|||+|||+|..+.++|. .+ ..+|+..|+++++++.+
T Consensus 75 ~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a 117 (224)
T d1i1na_ 75 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDS 117 (224)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHH
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHH
Confidence 3688999999999988766554 34 34899999999998553
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.55 E-value=1.8e-07 Score=79.39 Aligned_cols=54 Identities=17% Similarity=0.237 Sum_probs=39.7
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
++..+..+|.+.. ..-.|.+|||+|||+|..+.++|..+. +|+..|+++++++.
T Consensus 54 ~~p~~~a~ml~~L----~l~~g~~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~ 107 (224)
T d1vbfa_ 54 TALNLGIFMLDEL----DLHKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNY 107 (224)
T ss_dssp CCHHHHHHHHHHT----TCCTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHH
T ss_pred ehhhhHHHHHHHh----hhcccceEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHH
Confidence 3444444444432 234788999999999988877777765 89999999998854
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=2e-07 Score=83.09 Aligned_cols=55 Identities=16% Similarity=0.112 Sum_probs=40.4
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHh
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~ 74 (269)
...+.+.+.+.. ..-.+.+|||||||+|-+.+.+|+ .+.+++++.|+++.+++.+
T Consensus 136 ~~~~~~~~~~~~----~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a 191 (328)
T d1nw3a_ 136 SFDLVAQMIDEI----KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYA 191 (328)
T ss_dssp CHHHHHHHHHHS----CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHH
T ss_pred HHHHHHHHHHHc----CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence 334444444442 133678999999999999987665 5677899999999998654
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=3e-06 Score=72.63 Aligned_cols=47 Identities=11% Similarity=0.000 Sum_probs=35.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
+..+|||||||+|..+++++.. ...+|+++|++++.++.+ ..|++.|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A-~~N~~~n 108 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYA-KKNVEQN 108 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHH-HHHHHHT
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHH-HHHHHHh
Confidence 4569999999999999776643 334899999999999543 3444443
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.41 E-value=1.9e-06 Score=72.26 Aligned_cols=132 Identities=17% Similarity=0.117 Sum_probs=81.8
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
+.++|||+|||+|..++.+|.. + ..+|+..|.+++.+ ...+.|+.... +..+++++
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~-----~~a~~~~~~~g-----------------l~~~i~l~ 113 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYA-----AITQQMLNFAG-----------------LQDKVTIL 113 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHH-----HHHHHHHHHHT-----------------CGGGEEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHH-----HHHHHHHHHcC-----------------CCccceee
Confidence 5679999999999999887763 2 24899999999987 55566665431 23467777
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.+|..+.-. . + .......+||+|
T Consensus 114 ~Gd~~e~l~---~--------------------------------------------l----------~~~~~~~~~D~i 136 (214)
T d2cl5a1 114 NGASQDLIP---Q--------------------------------------------L----------KKKYDVDTLDMV 136 (214)
T ss_dssp ESCHHHHGG---G--------------------------------------------H----------HHHSCCCCEEEE
T ss_pred ecccccccc---c--------------------------------------------h----------hhccccccccee
Confidence 776544210 0 0 000234589999
Q ss_pred EEeccccccCCHHHHHHHH--HHhcCCCCeEEEEEEcccccccCcchHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLI--KKCLRPPYGVVYLATKKNYVGFNNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l--~~~L~~p~g~~~va~k~~~fg~~~~~~~F~~~~~~~g~~~~~~ 254 (269)
+- | .+.+.+....... .++|+ |+|+++ +-...+ .|...|++.+++..-+....
T Consensus 137 fi-D--~~~~~~~~~~~l~~~~~lLk-pGGvIv-~Ddvl~----~g~~~~~~~vr~~~~~~~~~ 191 (214)
T d2cl5a1 137 FL-D--HWKDRYLPDTLLLEKCGLLR-KGTVLL-ADNVIV----PGTPDFLAYVRGSSSFECTH 191 (214)
T ss_dssp EE-C--SCGGGHHHHHHHHHHTTCEE-EEEEEE-ESCCCC----CCCHHHHHHHHHCTTEEEEE
T ss_pred ee-c--ccccccccHHHHHHHhCccC-CCcEEE-EeCcCC----CCChHHHHHHhccCceeehh
Confidence 87 5 3344444433333 34677 888644 433333 24678888888766554444
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.32 E-value=1.8e-06 Score=72.69 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=32.4
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHH
Q 024311 33 SFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~ 73 (269)
.-+|.+|||+|||+|..+.++|. .|. +|+..|.++++++.
T Consensus 76 l~~g~~VLeIGsGsGY~taila~l~g~-~V~~ie~~~~l~~~ 116 (215)
T d1jg1a_ 76 LKPGMNILEVGTGSGWNAALISEIVKT-DVYTIERIPELVEF 116 (215)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHCS-CEEEEESCHHHHHH
T ss_pred cCccceEEEecCCCChhHHHHHHhhCc-eeEEEeccHHHHHH
Confidence 44788999999999988866664 464 79999999998843
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=6.5e-06 Score=69.22 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=90.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeee
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHF 111 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 111 (269)
.+.++|||+|||+|..++.+|.. + ..+|+..|.+++.. ...+.|+.... ....+++
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~-----~~A~~~~~~ag-----------------~~~~i~~ 115 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPP-----ELGRPLWRQAE-----------------AEHKIDL 115 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHH-----HHHHHHHHHTT-----------------CTTTEEE
T ss_pred cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHH-----HHHHHHHHhcC-----------------ccceEEE
Confidence 36789999999999999888753 1 24899999999887 44556664421 2345666
Q ss_pred ecCCCCCcc-hhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCcc
Q 024311 112 YAGDWEELP-TVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYD 190 (269)
Q Consensus 112 ~~~dw~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fD 190 (269)
..+|..+.. ... ......+||
T Consensus 116 ~~Gda~e~l~~~~----------------------------------------------------------~~~~~~~fD 137 (219)
T d2avda1 116 RLKPALETLDELL----------------------------------------------------------AAGEAGTFD 137 (219)
T ss_dssp EESCHHHHHHHHH----------------------------------------------------------HTTCTTCEE
T ss_pred EEeehhhcchhhh----------------------------------------------------------hhcccCCcc
Confidence 656543311 000 002356899
Q ss_pred EEEEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccccc----------CcchHHHHHHhhhcCceeEEEEeeecC
Q 024311 191 VILLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------NNAARHLRSLVDEEGIFGAHLIKEMTD 260 (269)
Q Consensus 191 lIlasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~----------~~~~~~F~~~~~~~g~~~~~~~~~~~~ 260 (269)
+|+. |. +...+...++.+.++|+ |+|++++-.- ...|. ...+.+|.+.+++.--+.+.+ ..+.|
T Consensus 138 ~ifi-D~--dk~~y~~~~~~~~~lL~-~GGvii~Dn~-l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~l-lPigd 211 (219)
T d2avda1 138 VAVV-DA--DKENCSAYYERCLQLLR-PGGILAVLRV-LWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISL-LPLGD 211 (219)
T ss_dssp EEEE-CS--CSTTHHHHHHHHHHHEE-EEEEEEEECC-SGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEEE-ECSTT
T ss_pred EEEE-eC--CHHHHHHHHHHHHHHhc-CCcEEEEeCC-cccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEEE-eecCC
Confidence 9998 54 45677888888888998 8888876422 22120 013678999988866554444 34444
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.26 E-value=1.9e-05 Score=67.27 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=49.9
Q ss_pred CccEEEEeccccccCC--HHHHHHHHHHhcCCCCeEEEEEEccc--------------cc---------ccCcchHHHHH
Q 024311 188 GYDVILLTEIPYSVTS--LKKLYLLIKKCLRPPYGVVYLATKKN--------------YV---------GFNNAARHLRS 242 (269)
Q Consensus 188 ~fDlIlasD~iY~~~~--~~~L~~~l~~~L~~p~g~~~va~k~~--------------~f---------g~~~~~~~F~~ 242 (269)
..|+|+.+-++++.++ ...+++.+++.|+ |+|+++|.-... ++ |...+..+|.+
T Consensus 139 ~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~-pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ 217 (244)
T d1fp1d2 139 QGDAMILKAVCHNWSDEKCIEFLSNCHKALS-PNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEK 217 (244)
T ss_dssp CEEEEEEESSGGGSCHHHHHHHHHHHHHHEE-EEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHH
T ss_pred cceEEEEehhhhhCCHHHHHHHHHHHHHHcC-CCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHH
Confidence 4599999999998865 4467888888998 899998874211 00 11124688999
Q ss_pred HhhhcCceeEEEEe
Q 024311 243 LVDEEGIFGAHLIK 256 (269)
Q Consensus 243 ~~~~~g~~~~~~~~ 256 (269)
++++.||-.++++.
T Consensus 218 ll~~AGF~~v~v~~ 231 (244)
T d1fp1d2 218 LSKLSGFSKFQVAC 231 (244)
T ss_dssp HHHHTTCSEEEEEE
T ss_pred HHHHcCCCceEEEe
Confidence 99999987777754
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.20 E-value=9.1e-06 Score=74.38 Aligned_cols=42 Identities=19% Similarity=0.202 Sum_probs=35.1
Q ss_pred CCCCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHh
Q 024311 33 SFRGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 33 ~~~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~ 74 (269)
.-.|.+|||||||+|-+.+.+|. .|.++|++.|+++.+++.+
T Consensus 214 Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~A 256 (406)
T d1u2za_ 214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLT 256 (406)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHH
T ss_pred CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 34788999999999988877664 5767999999999998664
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.16 E-value=2.3e-06 Score=72.28 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=33.8
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc----C---CCeEEEEeCCHHHHHHhhHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK----G---AGTVHFQDLSAETIRCTTVPNVL 80 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~----g---a~~Vv~tD~~~~vl~~~~~~Nl~ 80 (269)
-+|.+|||+|||+|..+.+++.. | ..+|+..|+++++++.. ..|+.
T Consensus 79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a-~~~l~ 131 (223)
T d1r18a_ 79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRS-KANLN 131 (223)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHH-HHHHH
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHH-HHhhh
Confidence 46889999999999877555542 2 13799999999998654 34443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=4.3e-06 Score=69.90 Aligned_cols=38 Identities=24% Similarity=0.497 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCC-CeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGA-GTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga-~~Vv~tD~~~~vl 71 (269)
+++++|||+|+|.|+||+.+|...+ .+|++.|-+..=+
T Consensus 64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~ 102 (207)
T d1jsxa_ 64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV 102 (207)
T ss_dssp CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHH
T ss_pred hcCCceeeeeccCCceeeehhhhcccceEEEEecchHHH
Confidence 4678999999999999998886544 6899999987644
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=2.3e-05 Score=69.58 Aligned_cols=61 Identities=18% Similarity=0.090 Sum_probs=45.2
Q ss_pred HHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHHHHh
Q 024311 16 SIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANLEQA 86 (269)
Q Consensus 16 s~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~ 86 (269)
+..|.+++.+.. ....+.+||||-||+|..|+.+|..+. +|++.|.+++.+ ...+.|...|
T Consensus 197 ~e~l~~~v~~~~----~~~~~~~vlDLycG~G~fsl~La~~~~-~V~gvE~~~~ai-----~~A~~na~~n 257 (358)
T d1uwva2 197 NQKMVARALEWL----DVQPEDRVLDLFCGMGNFTLPLATQAA-SVVGVEGVPALV-----EKGQQNARLN 257 (358)
T ss_dssp HHHHHHHHHHHH----TCCTTCEEEEESCTTTTTHHHHHTTSS-EEEEEESCHHHH-----HHHHHHHHHT
T ss_pred hhHHHHHHHHhh----ccCCCceEEEecccccccchhcccccc-EEEeccCcHHHH-----HHHHHhHHhc
Confidence 334444444443 133577999999999999999987654 999999999998 5566776654
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.06 E-value=7.3e-05 Score=63.46 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=47.7
Q ss_pred CccEEEEeccccccCCHH--HHHHHHHHhcCCCC---eEEEEEEccc--------------cc--------ccCcchHHH
Q 024311 188 GYDVILLTEIPYSVTSLK--KLYLLIKKCLRPPY---GVVYLATKKN--------------YV--------GFNNAARHL 240 (269)
Q Consensus 188 ~fDlIlasD~iY~~~~~~--~L~~~l~~~L~~p~---g~~~va~k~~--------------~f--------g~~~~~~~F 240 (269)
.+|+++.+-++++.++-+ .+++.+++.|+ |+ |+++|.-... .+ |...+..+|
T Consensus 138 ~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~-pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~ 216 (244)
T d1fp2a2 138 NADAVLLKYILHNWTDKDCLRILKKCKEAVT-NDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEW 216 (244)
T ss_dssp CCSEEEEESCGGGSCHHHHHHHHHHHHHHHS-GGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHH
T ss_pred CCcEEEEEeecccCChHHHHHHHHHHHHHcC-cccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence 679999999999876554 57888888898 55 7777753210 01 222367899
Q ss_pred HHHhhhcCceeEEEE
Q 024311 241 RSLVDEEGIFGAHLI 255 (269)
Q Consensus 241 ~~~~~~~g~~~~~~~ 255 (269)
.+.+++.||-.+++.
T Consensus 217 ~~ll~~AGf~~~~i~ 231 (244)
T d1fp2a2 217 KKLFIEAGFQHYKIS 231 (244)
T ss_dssp HHHHHHTTCCEEEEE
T ss_pred HHHHHHcCCceEEEE
Confidence 999999998666654
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.93 E-value=0.00012 Score=61.76 Aligned_cols=74 Identities=16% Similarity=0.097 Sum_probs=47.5
Q ss_pred ccEEEEeccccccC--CHHHHHHHHHHhcCCCCeEEEEEEccc--------------c----------cccCcchHHHHH
Q 024311 189 YDVILLTEIPYSVT--SLKKLYLLIKKCLRPPYGVVYLATKKN--------------Y----------VGFNNAARHLRS 242 (269)
Q Consensus 189 fDlIlasD~iY~~~--~~~~L~~~l~~~L~~p~g~~~va~k~~--------------~----------fg~~~~~~~F~~ 242 (269)
.|+++.+-++++.. ....+++.+.+.|+ |+|+++|.-... + -|...+..+|.+
T Consensus 140 ad~~~l~~vlh~~~d~~~~~iL~~~~~al~-pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ 218 (243)
T d1kyza2 140 ADAVFMKWICHDWSDEHCLKFLKNCYEALP-DNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFED 218 (243)
T ss_dssp CSCEECSSSSTTSCHHHHHHHHHHHHHHCC-SSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHH
T ss_pred cceEEEEEEeecCCHHHHHHHHHHHHHhcC-CCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHH
Confidence 35556566777664 35567888888898 888877762210 1 122235789999
Q ss_pred HhhhcCceeEEEEeeecCcce
Q 024311 243 LVDEEGIFGAHLIKEMTDRDI 263 (269)
Q Consensus 243 ~~~~~g~~~~~~~~~~~~~~i 263 (269)
.+++.||-.++++.......|
T Consensus 219 ll~~AGf~~vkv~~~~~~~~v 239 (243)
T d1kyza2 219 LAKGAGFQGFKVHCNAFNTYI 239 (243)
T ss_dssp HHHHHCCSCEEEEEEETTEEE
T ss_pred HHHHcCCCcEEEEEeCCCCEE
Confidence 999999977777544444433
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.86 E-value=3.9e-05 Score=64.66 Aligned_cols=137 Identities=14% Similarity=0.180 Sum_probs=85.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-C-CCeEEEEeCCHHHHHHhhHHHHHHHHHHhhhhhccCCCCCCCCCccCCCCeeeee
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-G-AGTVHFQDLSAETIRCTTVPNVLANLEQARERQSRQPESSLTPSRQTLAPSVHFY 112 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-g-a~~Vv~tD~~~~vl~~~~~~Nl~~N~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 112 (269)
+-++|||+|+++|..++.+|.. + ..+|+.+|.+++..+ -.+.|+..+. ...++++.
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~-----~A~~~~~~~g-----------------~~~~i~~~ 116 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYE-----LGLPVIKKAG-----------------VDHKIDFR 116 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHH-----HHHHHHHHTT-----------------CGGGEEEE
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHH-----HHHHHHHHhc-----------------cccceeee
Confidence 5679999999999999887752 2 249999999998763 3344554321 22456666
Q ss_pred cCCCCCcchhhhhhccccccccccccccccccccccCCCCCCCcccccCCcccccccccCchhhhhhcccccCCCCccEE
Q 024311 113 AGDWEELPTVLSVVRNDVSEVTTGMSLSFSEEDFMDGCSSQDGSIIGQDSSSRRSRKLSGSRAWERASEADQGEGGYDVI 192 (269)
Q Consensus 113 ~~dw~~~~~~~~~~~~d~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~l~gs~~W~~~~~~~~~~~~fDlI 192 (269)
.++..+.- . .+ .......++||+|
T Consensus 117 ~g~a~~~L--~-~l-----------------------------------------------------~~~~~~~~~fD~i 140 (227)
T d1susa1 117 EGPALPVL--D-EM-----------------------------------------------------IKDEKNHGSYDFI 140 (227)
T ss_dssp ESCHHHHH--H-HH-----------------------------------------------------HHCGGGTTCBSEE
T ss_pred ehHHHHHH--H-HH-----------------------------------------------------HhccccCCceeEE
Confidence 66544321 0 00 0001135689999
Q ss_pred EEeccccccCCHHHHHHHHHHhcCCCCeEEEEEEccccccc----------------CcchHHHHHHhhhcCceeEEE
Q 024311 193 LLTEIPYSVTSLKKLYLLIKKCLRPPYGVVYLATKKNYVGF----------------NNAARHLRSLVDEEGIFGAHL 254 (269)
Q Consensus 193 lasD~iY~~~~~~~L~~~l~~~L~~p~g~~~va~k~~~fg~----------------~~~~~~F~~~~~~~g~~~~~~ 254 (269)
+- |. +...+..-++.+.++|+ |+|++++-. ....|. ...+.+|.+.+++..-+.+.+
T Consensus 141 Fi-Da--~k~~y~~~~e~~~~ll~-~gGiii~DN-vl~~G~v~~~~~~~~~~~~~~~~~~i~~~n~~i~~d~r~~~~l 213 (227)
T d1susa1 141 FV-DA--DKDNYLNYHKRLIDLVK-VGGVIGYDN-TLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICM 213 (227)
T ss_dssp EE-CS--CSTTHHHHHHHHHHHBC-TTCCEEEET-TTGGGGGGCCTTCCCCHHHHHHHHHHHHHHHHHHHCTTBCCEE
T ss_pred Ee-cc--chhhhHHHHHHHHhhcC-CCcEEEEcc-CCCCCcccCCcccchHHHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 98 64 55678888888889998 888877642 222110 113567777777665444443
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.76 E-value=5e-05 Score=65.72 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=34.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~ 74 (269)
+.++||-||.|.|.....+...+..+|++.|++++|++.+
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a 111 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVS 111 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHH
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHH
Confidence 5679999999999888777777777999999999999664
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.74 E-value=5.3e-05 Score=66.74 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~ 74 (269)
..++||.||.|.|.....+.+. +..+|++.|++++|++.+
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a 117 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVA 117 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHH
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHH
Confidence 4679999999999777666655 456899999999999765
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.72 E-value=0.00018 Score=60.92 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETI 71 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl 71 (269)
.+++|+|+|+|.|+|||.+|. .+..+|++.|-+..=.
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~ 107 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRI 107 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHH
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHH
Confidence 467999999999999988775 5567999999987543
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.66 E-value=0.0004 Score=60.54 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHH----cC--CCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACL----KG--AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~----~g--a~~Vv~tD~~~~vl~~~ 74 (269)
.+.+|||.+||+|...+.+.. .+ ..++++.|.++.+++.+
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a 162 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLA 162 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHH
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHH
Confidence 567999999999977666542 11 23699999999988543
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.59 E-value=0.00014 Score=65.51 Aligned_cols=47 Identities=30% Similarity=0.349 Sum_probs=37.5
Q ss_pred CCCEEEEEcCCCCHHHHHHHH-cCCCeEEEEeCCHHHHHHhhHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACL-KGAGTVHFQDLSAETIRCTTVPNVLAN 82 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N 82 (269)
++++|||..||||+-||-+++ .|+.+|++.|.|++.++.+ ..|+++|
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i-~~N~~lN 92 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELM-KRNVMLN 92 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHH-HHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHH-HHHHHhc
Confidence 678999999999999996554 7888999999999999443 3444444
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.59 E-value=0.00074 Score=54.71 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=34.4
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHH--cCCCeEEEEeCCHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETI 71 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~--~ga~~Vv~tD~~~~vl 71 (269)
.++++|..... .-++.+|||.|||+|..-+.+.. ....++++.|+++..+
T Consensus 6 ~i~~~m~~l~~----~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~ 57 (223)
T d2ih2a1 6 EVVDFMVSLAE----APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL 57 (223)
T ss_dssp HHHHHHHHHCC----CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTC
T ss_pred HHHHHHHHhcC----CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHH
Confidence 46777777642 23678999999999955444332 2345799999988544
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.46 E-value=3.8e-05 Score=62.85 Aligned_cols=42 Identities=17% Similarity=0.324 Sum_probs=33.2
Q ss_pred CCCCccEEEEecccc--ccCCHHHHHHHHHHhcCCCCeEEEEEEc
Q 024311 185 GEGGYDVILLTEIPY--SVTSLKKLYLLIKKCLRPPYGVVYLATK 227 (269)
Q Consensus 185 ~~~~fDlIlasD~iY--~~~~~~~L~~~l~~~L~~p~g~~~va~k 227 (269)
..++||+|++-.++- +++....+++.+.++|+ |+|.++++..
T Consensus 129 ~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~-pGG~L~lG~s 172 (193)
T d1af7a2 129 VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLK-PDGLLFAGHS 172 (193)
T ss_dssp CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEE-EEEEEEECTT
T ss_pred CCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhC-CCcEEEEecC
Confidence 356899999999876 33455678999999998 9999888743
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=0.0011 Score=57.25 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~ 74 (269)
..++||=||-|.|...-.+.+. +..+|++.|++++|++.+
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a 118 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVS 118 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHH
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHH
Confidence 4579999999999777776664 567999999999999765
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.36 E-value=0.00034 Score=57.16 Aligned_cols=40 Identities=18% Similarity=0.068 Sum_probs=31.1
Q ss_pred CCCCEEEEEcCCCCHHHHHHH-HcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFAC-LKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa-~~ga~~Vv~tD~~~~vl~~ 73 (269)
..+..|||.+||+|--+...+ ..+..+|++.|.+++++..
T Consensus 22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~ 62 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRI 62 (192)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHH
T ss_pred CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHH
Confidence 367899999999997764443 3444589999999999843
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.33 E-value=0.0013 Score=57.26 Aligned_cols=40 Identities=15% Similarity=0.073 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~ 74 (269)
..++||-||.|.|...-.+.+. +..+|++.|++++|++.+
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a 129 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAA 129 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHH
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHH
Confidence 4679999999999776666654 457899999999999765
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.31 E-value=0.0014 Score=56.22 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~ 74 (269)
..++||-||-|.|...-.+.+. +.++|++.|++++|++.+
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a 115 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYS 115 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHH
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHH
Confidence 4579999999999888777764 567999999999999664
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.28 E-value=0.0005 Score=57.85 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
-++.+|||+|||+|.+...++..++ +|++.|+++.++
T Consensus 20 ~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~ 56 (235)
T d1qama_ 20 NEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLC 56 (235)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHH
T ss_pred CCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchH
Confidence 4788999999999999988777765 899999999877
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.18 E-value=0.0022 Score=55.40 Aligned_cols=40 Identities=13% Similarity=0.112 Sum_probs=33.2
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~ 74 (269)
+-++||-||-|.|...-.+.+. +.++|++.|++++|++.+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~ 120 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVS 120 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHH
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHH
Confidence 4579999999999777766665 447899999999999765
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=96.75 E-value=0.0068 Score=52.88 Aligned_cols=40 Identities=20% Similarity=0.103 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHh
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~ 74 (269)
..++||-||-|.|.+.-.+.+. +..+|++.|++++|++.+
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a 146 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVA 146 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHH
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHH
Confidence 4579999999999777766664 346999999999999654
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=96.66 E-value=0.00042 Score=58.73 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=31.0
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
.+.+|||+|||+|.+...++..++ +|++.|+++.++
T Consensus 29 ~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~ 64 (245)
T d1yuba_ 29 ETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLF 64 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSS
T ss_pred CCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccch
Confidence 677999999999988877777765 899999998765
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.0013 Score=55.94 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
..+..|||+|||+|.+.-.++..+. +|++.|+++.++
T Consensus 20 ~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~ 56 (252)
T d1qyra_ 20 QKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLA 56 (252)
T ss_dssp CTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchh
Confidence 3578999999999999888887765 899999999887
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.012 Score=50.34 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
.+..|||+|+|+|.+...++..++ +|++.+.++.++
T Consensus 21 ~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~ 56 (278)
T d1zq9a1 21 PTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLV 56 (278)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHH
T ss_pred CCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchh
Confidence 677999999999999988887776 999999999887
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.07 Score=42.30 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=35.0
Q ss_pred cHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHH-cC-CCeEEEEeCCH
Q 024311 15 SSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL-KG-AGTVHFQDLSA 68 (269)
Q Consensus 15 as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~-~g-a~~Vv~tD~~~ 68 (269)
|+.-|.+-..+. +..-++.+||||||+.|--.-++.. .+ ..+|++.|..+
T Consensus 6 aafKL~EI~~k~----~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~ 57 (180)
T d1ej0a_ 6 AWFKLDEIQQSD----KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP 57 (180)
T ss_dssp HHHHHHHHHHHH----CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHHHHHHHHHh----CccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc
Confidence 556666654443 2345788999999999988876654 23 35799999865
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.17 E-value=0.018 Score=47.82 Aligned_cols=56 Identities=14% Similarity=-0.005 Sum_probs=39.4
Q ss_pred CceeeccHHHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHH----cC-CCeEEEEeCCHH
Q 024311 9 FLKCWESSIDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACL----KG-AGTVHFQDLSAE 69 (269)
Q Consensus 9 G~~vW~as~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~----~g-a~~Vv~tD~~~~ 69 (269)
|.++|..-.+++-|- ..+ ..++.++|||+|++.|...+..+. .+ ..+|+..|+++.
T Consensus 59 G~p~~k~p~d~~~~~-eli----~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~ 119 (232)
T d2bm8a1 59 GLRMLKDPDTQAVYH-DML----WELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLS 119 (232)
T ss_dssp TEECCSCHHHHHHHH-HHH----HHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCT
T ss_pred ceecccCHHHHHHHH-HHH----HHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChh
Confidence 788888888887662 222 134678999999999976654432 22 358999999764
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=95.75 E-value=0.035 Score=49.68 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=35.8
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc----C----------CCeEEEEeCCHHHHHHh
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK----G----------AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~----g----------a~~Vv~tD~~~~vl~~~ 74 (269)
.++++|.+... .-.+.+|+|-.||+|..-+.+... + ...+.++|+++.+...+
T Consensus 149 ~Iv~~mv~ll~----~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la 215 (425)
T d2okca1 149 PLIQAMVDCIN----PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLA 215 (425)
T ss_dssp HHHHHHHHHHC----CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHH
T ss_pred hhhHhhheecc----CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHH
Confidence 45666666542 225779999999999666555431 1 12489999999887543
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=94.21 E-value=0.028 Score=47.27 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=31.6
Q ss_pred CEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 37 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
.+|||+-||.|.-++++|..|. +|++.+.++.+..
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ 124 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAA 124 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHH
T ss_pred CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHH
Confidence 4899999999999999999997 8999999997653
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=94.09 E-value=0.2 Score=39.58 Aligned_cols=38 Identities=16% Similarity=0.017 Sum_probs=30.2
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
-.|..++|..+|.|--+..+...+. +|++.|.+++++.
T Consensus 17 ~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~ 54 (182)
T d1wg8a2 17 RPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVA 54 (182)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHH
T ss_pred CCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHH
Confidence 3688999999999966655444554 8999999999873
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.81 E-value=0.23 Score=42.52 Aligned_cols=46 Identities=15% Similarity=0.253 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCCCHHHHHHHH--cCCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACL--KGAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~--~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|.+|||+.||.|.=++.++. .+...|++.|.++.-+ ..++.|+..
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~-----~~l~~~~~r 163 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRL-----RETRLNLSR 163 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHH-----HHHHHHHHH
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHH-----HHHHHHHHH
Confidence 678999999999976554443 3334799999998776 445555543
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.34 E-value=0.25 Score=41.64 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=33.3
Q ss_pred CCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|.+|||+.||.|.=++.++.. ...+|++.|.++.=+ ..++.|+..
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~-----~~l~~~~~r 148 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRL-----SRVYDNLKR 148 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTH-----HHHHHHHHH
T ss_pred ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhh-----hhHhhhhhc
Confidence 6789999999999666554443 335899999998766 445556543
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=93.12 E-value=0.054 Score=49.84 Aligned_cols=54 Identities=17% Similarity=-0.006 Sum_probs=36.4
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHc----C---------------CCeEEEEeCCHHHHHHh
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLK----G---------------AGTVHFQDLSAETIRCT 74 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~----g---------------a~~Vv~tD~~~~vl~~~ 74 (269)
..++++|.+... ...+.+|+|-.||+|-.-+.+... . ...+++.|+++.+.+.+
T Consensus 150 ~~Iv~~mv~ll~----~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la 222 (524)
T d2ar0a1 150 RPLIKTIIHLLK----PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 222 (524)
T ss_dssp HHHHHHHHHHHC----CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred cchhHhhhhccc----CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH
Confidence 356677766542 235679999999999665554431 1 12589999999887544
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.36 E-value=0.12 Score=44.56 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCCCHHHHHHHHc-CCCeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGYGLPGIFACLK-GAGTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGtGl~gl~aa~~-ga~~Vv~tD~~~~vl 71 (269)
.++..|||+|.|.|.++..+... .+++|++.+.++..+
T Consensus 42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~ 80 (322)
T d1i4wa_ 42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLY 80 (322)
T ss_dssp TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHH
T ss_pred cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHH
Confidence 36779999999999988766544 567999999999876
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=91.15 E-value=0.23 Score=41.77 Aligned_cols=47 Identities=19% Similarity=0.110 Sum_probs=38.4
Q ss_pred CCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHhhHHHHHHHH
Q 024311 32 LSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCTTVPNVLANL 83 (269)
Q Consensus 32 ~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~ 83 (269)
....+.+||||-||.|..++.+-..|..-|.+.|+++..+ .-.+.|.
T Consensus 7 ~~~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~-----~~~~~N~ 53 (327)
T d2c7pa1 7 KQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQ-----EVYEMNF 53 (327)
T ss_dssp CTTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHH-----HHHHHHH
T ss_pred ccCCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHH-----HHHHHHC
Confidence 3457899999999999888888888986677899999877 4456665
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.11 E-value=0.45 Score=40.10 Aligned_cols=46 Identities=22% Similarity=0.318 Sum_probs=33.3
Q ss_pred CCCEEEEEcCCCCHHHHHHH-H-cCCCeEEEEeCCHHHHHHhhHHHHHHHHHH
Q 024311 35 RGKRVLELSCGYGLPGIFAC-L-KGAGTVHFQDLSAETIRCTTVPNVLANLEQ 85 (269)
Q Consensus 35 ~~~~VLELGcGtGl~gl~aa-~-~ga~~Vv~tD~~~~vl~~~~~~Nl~~N~~~ 85 (269)
.|.+|||+.||.|-=++.+| . .+..+|++.|.++.=+ ..++.|+..
T Consensus 94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~-----~~l~~~l~r 141 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRL-----ASMATLLAR 141 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHH-----HHHHHHHHH
T ss_pred ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHH-----HHHHHHHHh
Confidence 58899999999997554433 3 3445899999998866 445566543
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=90.50 E-value=0.32 Score=39.01 Aligned_cols=51 Identities=25% Similarity=0.198 Sum_probs=42.0
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
+.|.+++.+.. ..+|-.|||--||+|-++++|...|- +.++.|++++-++.
T Consensus 199 ~~L~~~lI~~~-----s~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~ 249 (256)
T d1g60a_ 199 RDLIERIIRAS-----SNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQ 249 (256)
T ss_dssp HHHHHHHHHHH-----CCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred hhHHHHHHHHh-----CCCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence 45666666552 45788999999999999999999986 89999999988754
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.04 E-value=0.28 Score=39.86 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=43.1
Q ss_pred HHHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHHh
Q 024311 17 IDLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRCT 74 (269)
Q Consensus 17 ~~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~~ 74 (269)
+.|.+++.... ...|-.|||-=||+|-++++|..+|. +.++.|++++..+.+
T Consensus 194 ~~L~~~~I~~~-----s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a 245 (279)
T d1eg2a_ 194 AAVIERLVRAL-----SHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYY 245 (279)
T ss_dssp HHHHHHHHHHH-----SCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHH
T ss_pred hhHHHHHHHhh-----cCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHH
Confidence 46777776653 34788999999999999999999986 899999999987543
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=89.82 E-value=0.25 Score=40.84 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=41.5
Q ss_pred HHHHHHhhhhhcCCCCCCCCEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHHHH
Q 024311 18 DLVNVLKHEIRDGQLSFRGKRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 18 ~La~~L~~~~~~~~~~~~~~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl~~ 73 (269)
.|.++|.... .-.|..|||--||+|-++++|..+|. +.+++|++++.++.
T Consensus 238 ~L~~rlI~~~-----s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~ 287 (320)
T d1booa_ 238 KLPEFFIRML-----TEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAA 287 (320)
T ss_dssp HHHHHHHHHH-----CCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred HHHHHhhhhc-----ccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHH
Confidence 5666666553 34788999999999999999999986 89999999988754
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=89.78 E-value=0.22 Score=39.45 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCCC-CHHHHHHH-HcCCCeEEEEeCCHHHHHH
Q 024311 34 FRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 34 ~~~~~VLELGcGt-Gl~gl~aa-~~ga~~Vv~tD~~~~vl~~ 73 (269)
-.|.+||-+|||. |+..+.++ ..|+.+|+++|.+++-++.
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~ 65 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAH 65 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHh
Confidence 4788999999986 55555444 4688899999999876643
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=86.51 E-value=0.85 Score=34.93 Aligned_cols=39 Identities=31% Similarity=0.390 Sum_probs=28.5
Q ss_pred CCCCEEEEEcCCC-CHHHHHHH-HcCCCeEEEEeCCHHHHH
Q 024311 34 FRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 34 ~~~~~VLELGcGt-Gl~gl~aa-~~ga~~Vv~tD~~~~vl~ 72 (269)
-.|.+||=+|||. |+..+.++ ..|+++|+++|.+++-++
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~ 67 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLK 67 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHH
T ss_pred CCCCEEEEECCCccchhheeccccccccccccccccccccc
Confidence 3688999999873 44443333 468878999999997653
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=86.50 E-value=0.34 Score=37.56 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=30.8
Q ss_pred CCCCCEEEEEcCCC-CHHHHHHHH-cCCCeEEEEeCCHHHH
Q 024311 33 SFRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETI 71 (269)
Q Consensus 33 ~~~~~~VLELGcGt-Gl~gl~aa~-~ga~~Vv~tD~~~~vl 71 (269)
.-.|.+||=+|||. |+.++.+++ .|+++|+++|.+++=+
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~ 66 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF 66 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHH
Confidence 34788999999986 777766554 7888999999998644
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=86.43 E-value=0.55 Score=38.75 Aligned_cols=35 Identities=11% Similarity=0.034 Sum_probs=30.2
Q ss_pred CEEEEEcCCCCHHHHHHHHcCCCeEEEEeCCHHHH
Q 024311 37 KRVLELSCGYGLPGIFACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 37 ~~VLELGcGtGl~gl~aa~~ga~~Vv~tD~~~~vl 71 (269)
.+||||-||.|..++.+-..|.+-|.+.|+++...
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~ 35 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIW 35 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHH
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHH
Confidence 47999999999888887778987777999999776
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=85.82 E-value=0.44 Score=36.82 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCCC-CHHHHHHHH-cCCCeEEEEeCCHHHHH
Q 024311 34 FRGKRVLELSCGY-GLPGIFACL-KGAGTVHFQDLSAETIR 72 (269)
Q Consensus 34 ~~~~~VLELGcGt-Gl~gl~aa~-~ga~~Vv~tD~~~~vl~ 72 (269)
-+|.+||=+|||. |+..+.+++ .|+++|+++|.+++-++
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~ 66 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVE 66 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHH
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHH
Confidence 3677888899985 666655554 68888999999987553
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.89 E-value=0.79 Score=34.75 Aligned_cols=38 Identities=34% Similarity=0.431 Sum_probs=28.1
Q ss_pred CCCCEEEEEcCCC-CHHHHH-HHHcCCCeEEEEeCCHHHH
Q 024311 34 FRGKRVLELSCGY-GLPGIF-ACLKGAGTVHFQDLSAETI 71 (269)
Q Consensus 34 ~~~~~VLELGcGt-Gl~gl~-aa~~ga~~Vv~tD~~~~vl 71 (269)
-.|.+||=+|||. |+..+. |...|+.+|+++|.+++-+
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl 64 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRL 64 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHH
Confidence 3677999999875 444433 3347888999999998765
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=82.73 E-value=1.6 Score=33.85 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=31.1
Q ss_pred CCCCCEEEEEcCCC-CHHHHHHH-HcCCCeEEEEeCCHHHHHH
Q 024311 33 SFRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 33 ~~~~~~VLELGcGt-Gl~gl~aa-~~ga~~Vv~tD~~~~vl~~ 73 (269)
.++..+|+=||+|. |+-++..| .+|+ .|++.|.+++.++.
T Consensus 29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~ 70 (168)
T d1pjca1 29 GVKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSY 70 (168)
T ss_dssp TBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred CCCCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHH
Confidence 34778999999997 56665544 5788 89999999988743
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=81.11 E-value=0.79 Score=35.31 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=30.2
Q ss_pred CCCCCEEEEEcCCC-CHHHHHH-HHcCCCeEEEEeCCHHHHHH
Q 024311 33 SFRGKRVLELSCGY-GLPGIFA-CLKGAGTVHFQDLSAETIRC 73 (269)
Q Consensus 33 ~~~~~~VLELGcGt-Gl~gl~a-a~~ga~~Vv~tD~~~~vl~~ 73 (269)
.-.|.+||=.|||. |+..+.. ...|+.+|+++|.+++-++.
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~ 69 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEK 69 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHH
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHH
Confidence 34788999999985 4555443 34787899999999986643
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=80.73 E-value=4.2 Score=31.11 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=32.3
Q ss_pred CCCCCCCEEEEEcCCCCHHH---HHHHHcCCCeEEEEeCCHHHHH
Q 024311 31 QLSFRGKRVLELSCGYGLPG---IFACLKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 31 ~~~~~~~~VLELGcGtGl~g---l~aa~~ga~~Vv~tD~~~~vl~ 72 (269)
..+++||+||=.|++.|+-. ..+++.|+ +|+++|.+++-++
T Consensus 18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~ 61 (191)
T d1luaa1 18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQ 61 (191)
T ss_dssp TSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHH
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHH
Confidence 46789999999998887533 33556787 8999999988763
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=80.23 E-value=0.81 Score=35.12 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=29.8
Q ss_pred CCCCCEEEEEcCCC-CHHHHHHH-HcCCCeEEEEeCCHHHHH
Q 024311 33 SFRGKRVLELSCGY-GLPGIFAC-LKGAGTVHFQDLSAETIR 72 (269)
Q Consensus 33 ~~~~~~VLELGcGt-Gl~gl~aa-~~ga~~Vv~tD~~~~vl~ 72 (269)
.-.|.+||=+|||. |+..+.++ ..|+.+|+++|.+++-++
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~ 66 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFP 66 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHH
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHH
Confidence 44788999999985 45554433 478889999999987553
|